Query 008085
Match_columns 578
No_of_seqs 238 out of 1706
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 19:16:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 4E-108 9E-113 886.9 62.7 538 27-578 1-539 (539)
2 PLN00044 multi-copper oxidase- 100.0 2E-106 4E-111 865.1 59.8 525 21-578 19-554 (596)
3 PLN02835 oxidoreductase 100.0 6E-104 1E-108 846.7 60.7 522 1-578 1-531 (539)
4 PLN02991 oxidoreductase 100.0 7E-104 1E-108 841.4 59.6 494 26-578 25-530 (543)
5 PLN02792 oxidoreductase 100.0 6E-104 1E-108 843.1 58.0 510 24-578 11-523 (536)
6 PLN02168 copper ion binding / 100.0 7E-103 1E-107 835.5 59.4 519 5-578 5-541 (545)
7 PLN02354 copper ion binding / 100.0 1E-102 2E-107 838.1 59.2 509 23-578 21-538 (552)
8 KOG1263 Multicopper oxidases [ 100.0 2E-102 5E-107 823.8 58.4 539 14-578 13-555 (563)
9 PLN02604 oxidoreductase 100.0 4.3E-97 9E-102 802.5 60.4 519 21-578 16-561 (566)
10 PLN02191 L-ascorbate oxidase 100.0 1E-96 2E-101 797.4 58.6 512 27-578 21-561 (574)
11 TIGR03388 ascorbase L-ascorbat 100.0 1E-96 2E-101 797.5 58.2 512 29-578 1-538 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 2.7E-93 5.9E-98 768.4 54.4 492 30-561 9-534 (538)
13 TIGR01480 copper_res_A copper- 100.0 1.6E-78 3.5E-83 652.1 51.5 422 30-559 46-587 (587)
14 PRK10965 multicopper oxidase; 100.0 1.8E-76 3.8E-81 632.3 47.3 429 29-559 45-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 6.2E-75 1.3E-79 615.4 45.7 402 31-560 47-469 (471)
16 COG2132 SufI Putative multicop 100.0 1.6E-60 3.5E-65 508.3 41.0 402 42-560 46-450 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 3.6E-48 7.8E-53 390.1 26.1 267 23-315 21-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 1.2E-36 2.7E-41 261.5 12.8 116 35-150 1-117 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 1.1E-29 2.3E-34 227.7 12.1 108 449-560 29-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 6.3E-27 1.4E-31 214.3 12.1 149 161-313 1-158 (159)
21 TIGR03095 rusti_cyanin rusticy 99.7 1.3E-17 2.8E-22 148.8 13.0 102 44-147 37-148 (148)
22 TIGR02376 Cu_nitrite_red nitri 99.7 1.3E-14 2.8E-19 146.7 22.9 248 192-561 47-298 (311)
23 TIGR01480 copper_res_A copper- 99.6 8.6E-14 1.9E-18 151.1 21.4 226 51-292 249-572 (587)
24 TIGR03096 nitroso_cyanin nitro 99.5 9.3E-14 2E-18 119.5 12.3 113 7-137 4-124 (135)
25 PRK10965 multicopper oxidase; 99.4 2.6E-11 5.6E-16 130.8 22.5 251 30-294 180-510 (523)
26 PRK10883 FtsI repressor; Provi 99.3 1.6E-10 3.4E-15 123.6 20.2 235 31-294 181-455 (471)
27 PLN02835 oxidoreductase 99.3 4.2E-10 9.1E-15 121.9 20.8 239 48-292 191-497 (539)
28 TIGR03389 laccase laccase, pla 99.2 8.6E-10 1.9E-14 120.4 22.6 240 49-292 167-505 (539)
29 COG2132 SufI Putative multicop 99.2 8.9E-10 1.9E-14 118.2 17.9 232 45-293 186-435 (451)
30 PLN02604 oxidoreductase 99.0 2.6E-09 5.6E-14 117.0 12.6 92 454-562 55-146 (566)
31 PLN02168 copper ion binding / 99.0 5.9E-08 1.3E-12 105.1 22.0 240 48-292 188-501 (545)
32 TIGR03388 ascorbase L-ascorbat 99.0 8.6E-08 1.9E-12 104.8 22.5 228 61-292 204-509 (541)
33 TIGR03390 ascorbOXfungal L-asc 98.9 5.3E-08 1.1E-12 106.2 20.4 240 49-292 172-517 (538)
34 PLN02354 copper ion binding / 98.9 5.2E-08 1.1E-12 106.0 20.1 240 48-292 189-504 (552)
35 PLN02991 oxidoreductase 98.9 1.4E-07 3E-12 102.1 22.7 241 47-292 189-496 (543)
36 PLN02792 oxidoreductase 98.9 2.4E-07 5.2E-12 100.4 22.7 241 47-292 178-489 (536)
37 PF07731 Cu-oxidase_2: Multico 98.7 9.2E-08 2E-12 85.4 11.2 79 211-293 32-121 (138)
38 PLN02191 L-ascorbate oxidase 98.7 1.4E-06 3E-11 95.6 20.7 227 60-292 226-532 (574)
39 PF07732 Cu-oxidase_3: Multico 98.7 1E-07 2.3E-12 82.0 9.3 91 453-561 25-116 (117)
40 PLN00044 multi-copper oxidase- 98.5 5.5E-06 1.2E-10 90.5 19.4 83 193-292 49-132 (596)
41 PF13473 Cupredoxin_1: Cupredo 98.5 5.3E-07 1.2E-11 76.2 7.9 70 60-146 35-104 (104)
42 PRK02710 plastocyanin; Provisi 98.4 4.5E-06 9.8E-11 72.2 12.8 74 59-147 46-119 (119)
43 TIGR02656 cyanin_plasto plasto 98.3 3.9E-06 8.5E-11 70.1 8.3 82 59-147 16-99 (99)
44 KOG1263 Multicopper oxidases [ 98.2 0.00018 3.9E-09 78.0 20.2 261 28-292 158-521 (563)
45 TIGR02657 amicyanin amicyanin. 98.1 1.8E-05 3.9E-10 63.7 8.6 74 59-147 10-83 (83)
46 PF00394 Cu-oxidase: Multicopp 98.1 1.5E-05 3.3E-10 72.8 9.1 94 453-560 59-157 (159)
47 PF00127 Copper-bind: Copper b 98.1 1.1E-05 2.5E-10 67.3 7.4 83 59-147 16-99 (99)
48 PRK02888 nitrous-oxide reducta 98.0 2.6E-05 5.7E-10 84.0 10.2 100 39-149 532-635 (635)
49 TIGR03095 rusti_cyanin rusticy 98.0 2.9E-05 6.2E-10 69.6 8.7 92 454-559 52-148 (148)
50 TIGR03094 sulfo_cyanin sulfocy 98.0 0.00016 3.4E-09 64.9 12.6 100 49-151 73-189 (195)
51 PF06525 SoxE: Sulfocyanin (So 97.8 0.00042 9.1E-09 63.7 12.6 103 49-152 74-191 (196)
52 TIGR02656 cyanin_plasto plasto 97.6 0.0003 6.5E-09 58.7 7.9 83 454-559 17-99 (99)
53 COG3794 PetE Plastocyanin [Ene 97.4 0.00078 1.7E-08 58.1 8.7 75 60-148 54-128 (128)
54 TIGR02375 pseudoazurin pseudoa 97.4 0.0012 2.6E-08 56.3 9.0 76 59-150 14-90 (116)
55 TIGR03096 nitroso_cyanin nitro 97.4 0.0009 2E-08 58.1 8.0 59 455-544 62-120 (135)
56 TIGR03102 halo_cynanin halocya 97.2 0.0027 5.8E-08 54.1 8.8 74 59-147 41-115 (115)
57 PF00127 Copper-bind: Copper b 97.0 0.0043 9.4E-08 51.7 8.5 83 454-559 17-99 (99)
58 PRK02888 nitrous-oxide reducta 96.8 0.0049 1.1E-07 66.9 9.3 79 454-560 555-634 (635)
59 PF13473 Cupredoxin_1: Cupredo 96.5 0.011 2.4E-07 49.7 7.5 67 454-552 35-101 (104)
60 PRK02710 plastocyanin; Provisi 95.7 0.047 1E-06 47.1 7.8 73 454-559 47-119 (119)
61 COG4454 Uncharacterized copper 95.6 0.13 2.8E-06 45.5 9.8 88 56-148 59-158 (158)
62 TIGR02375 pseudoazurin pseudoa 95.1 0.15 3.3E-06 43.5 8.7 36 522-561 54-89 (116)
63 PF00116 COX2: Cytochrome C ox 94.6 0.24 5.1E-06 42.8 8.8 73 59-146 45-119 (120)
64 PF06525 SoxE: Sulfocyanin (So 94.5 0.15 3.3E-06 47.2 7.5 88 193-292 74-171 (196)
65 TIGR02695 azurin azurin. Azuri 93.7 0.33 7E-06 41.6 7.5 87 59-145 15-124 (125)
66 TIGR02657 amicyanin amicyanin. 93.7 0.53 1.1E-05 37.6 8.5 73 454-559 11-83 (83)
67 COG4454 Uncharacterized copper 93.5 0.13 2.9E-06 45.4 4.9 93 456-559 65-157 (158)
68 PRK10378 inactive ferrous ion 92.8 1.2 2.6E-05 46.1 11.5 79 56-150 40-119 (375)
69 TIGR03102 halo_cynanin halocya 91.8 1.1 2.3E-05 38.3 8.2 74 454-559 42-115 (115)
70 PF00116 COX2: Cytochrome C ox 91.5 2.4 5.2E-05 36.5 10.2 74 453-558 45-119 (120)
71 TIGR02866 CoxB cytochrome c ox 90.5 1.4 3E-05 41.8 8.5 76 60-150 117-194 (201)
72 TIGR02866 CoxB cytochrome c ox 89.1 1.8 3.8E-05 41.1 8.0 76 454-561 117-193 (201)
73 TIGR02695 azurin azurin. Azuri 86.2 5.4 0.00012 34.3 8.3 76 213-291 16-111 (125)
74 TIGR03094 sulfo_cyanin sulfocy 84.5 12 0.00026 34.3 10.1 100 452-561 83-187 (195)
75 COG3794 PetE Plastocyanin [Ene 84.5 5.5 0.00012 34.6 7.7 74 455-560 55-128 (128)
76 COG1622 CyoA Heme/copper-type 84.1 3.9 8.5E-05 39.9 7.5 77 60-151 137-215 (247)
77 COG4263 NosZ Nitrous oxide red 82.7 1.8 3.9E-05 44.9 4.7 77 60-147 558-636 (637)
78 COG1470 Predicted membrane pro 82.3 73 0.0016 33.9 17.0 182 62-295 278-470 (513)
79 PF12690 BsuPI: Intracellular 81.3 16 0.00034 29.1 8.7 67 223-290 4-82 (82)
80 COG1622 CyoA Heme/copper-type 77.1 9.4 0.0002 37.3 7.5 78 453-562 136-214 (247)
81 PF12690 BsuPI: Intracellular 73.3 21 0.00044 28.4 7.3 58 61-129 17-80 (82)
82 PF05506 DUF756: Domain of unk 70.2 32 0.00068 27.7 8.0 64 58-130 7-73 (89)
83 PF10633 NPCBM_assoc: NPCBM-as 63.6 8.1 0.00018 30.2 3.1 63 64-127 1-69 (78)
84 MTH00047 COX2 cytochrome c oxi 62.7 64 0.0014 30.3 9.5 76 454-561 116-192 (194)
85 MTH00140 COX2 cytochrome c oxi 62.2 31 0.00068 33.3 7.5 77 453-561 139-216 (228)
86 TIGR01433 CyoA cytochrome o ub 59.9 23 0.0005 34.2 6.1 75 455-561 140-215 (226)
87 MTH00140 COX2 cytochrome c oxi 58.7 1.2E+02 0.0026 29.2 11.0 77 59-150 139-217 (228)
88 PF05938 Self-incomp_S1: Plant 56.6 40 0.00086 28.3 6.4 69 71-149 2-71 (110)
89 PF01835 A2M_N: MG2 domain; I 52.4 52 0.0011 26.7 6.4 70 217-292 11-85 (99)
90 PF07705 CARDB: CARDB; InterP 48.7 1.4E+02 0.003 23.9 8.5 67 216-292 14-83 (101)
91 PF04151 PPC: Bacterial pre-pe 48.2 68 0.0015 24.2 6.0 65 213-291 5-69 (70)
92 TIGR01433 CyoA cytochrome o ub 47.9 45 0.00097 32.2 6.0 62 213-295 139-200 (226)
93 PTZ00047 cytochrome c oxidase 46.7 1.5E+02 0.0033 26.9 8.6 74 455-560 74-148 (162)
94 TIGR03079 CH4_NH3mon_ox_B meth 43.0 1.8E+02 0.0039 30.0 9.3 16 105-120 337-352 (399)
95 COG2967 ApaG Uncharacterized p 42.5 50 0.0011 28.0 4.5 48 72-120 34-87 (126)
96 COG3354 FlaG Putative archaeal 41.7 1.4E+02 0.003 26.4 7.2 64 221-291 70-141 (154)
97 MTH00047 COX2 cytochrome c oxi 40.1 3.2E+02 0.007 25.6 12.3 75 61-150 117-193 (194)
98 COG1188 Ribosome-associated he 39.3 22 0.00048 29.3 2.0 34 50-83 35-68 (100)
99 PF04379 DUF525: Protein of un 39.1 43 0.00094 27.2 3.7 49 222-273 15-67 (90)
100 PRK10378 inactive ferrous ion 38.6 1.3E+02 0.0028 31.4 7.9 64 211-292 42-105 (375)
101 TIGR01432 QOXA cytochrome aa3 38.6 68 0.0015 30.7 5.6 62 213-295 130-191 (217)
102 PRK05461 apaG CO2+/MG2+ efflux 38.6 49 0.0011 28.7 4.2 19 98-117 67-85 (127)
103 PRK05461 apaG CO2+/MG2+ efflux 38.0 83 0.0018 27.3 5.5 49 222-273 32-84 (127)
104 MTH00008 COX2 cytochrome c oxi 37.8 1E+02 0.0022 29.8 6.7 61 214-295 141-201 (228)
105 MTH00023 COX2 cytochrome c oxi 37.3 1.5E+02 0.0032 28.9 7.8 77 453-561 150-227 (240)
106 PF07691 PA14: PA14 domain; I 36.5 2.7E+02 0.0059 24.0 9.0 62 215-281 54-122 (145)
107 MTH00129 COX2 cytochrome c oxi 36.2 1.7E+02 0.0037 28.3 8.0 76 454-561 140-216 (230)
108 PF06030 DUF916: Bacterial pro 36.0 2.2E+02 0.0047 24.5 7.8 16 106-121 87-102 (121)
109 MTH00008 COX2 cytochrome c oxi 35.6 1.6E+02 0.0035 28.4 7.7 76 454-561 140-216 (228)
110 PTZ00047 cytochrome c oxidase 34.2 1.7E+02 0.0038 26.5 7.0 61 214-295 74-134 (162)
111 MTH00129 COX2 cytochrome c oxi 33.9 1.1E+02 0.0023 29.7 6.2 61 214-295 141-201 (230)
112 PF14344 DUF4397: Domain of un 33.6 2.2E+02 0.0047 24.1 7.6 21 224-244 3-24 (122)
113 cd00918 Der-p2_like Several gr 33.1 1.6E+02 0.0036 25.2 6.5 63 58-121 18-88 (120)
114 MTH00098 COX2 cytochrome c oxi 33.0 1.3E+02 0.0028 29.1 6.5 61 214-295 141-201 (227)
115 PF10989 DUF2808: Protein of u 32.9 99 0.0022 27.5 5.4 34 264-297 98-132 (146)
116 PF11142 DUF2917: Protein of u 32.5 1.2E+02 0.0027 22.6 5.0 46 215-272 2-47 (63)
117 MTH00051 COX2 cytochrome c oxi 29.9 1.5E+02 0.0032 28.8 6.4 62 213-295 144-205 (234)
118 TIGR01432 QOXA cytochrome aa3 29.8 1.3E+02 0.0029 28.7 6.1 75 455-561 131-206 (217)
119 KOG4063 Major epididymal secre 29.2 3.6E+02 0.0078 24.1 7.9 62 60-121 48-123 (158)
120 MTH00185 COX2 cytochrome c oxi 28.5 2.8E+02 0.006 26.9 8.0 76 453-560 139-215 (230)
121 MTH00185 COX2 cytochrome c oxi 28.3 1.9E+02 0.0041 28.0 6.8 62 213-295 140-201 (230)
122 smart00758 PA14 domain in bact 28.2 3.7E+02 0.0081 23.0 8.3 62 215-281 52-114 (136)
123 PF04744 Monooxygenase_B: Mono 28.1 2E+02 0.0043 29.7 7.0 99 32-145 249-377 (381)
124 cd00916 Npc2_like Niemann-Pick 27.7 2.1E+02 0.0046 24.5 6.4 62 60-121 22-92 (123)
125 MTH00098 COX2 cytochrome c oxi 27.6 2.5E+02 0.0054 27.1 7.5 76 454-561 140-216 (227)
126 PF10989 DUF2808: Protein of u 26.1 76 0.0017 28.2 3.5 26 520-545 99-128 (146)
127 PF11614 FixG_C: IG-like fold 25.1 2.4E+02 0.0052 23.7 6.3 50 222-280 34-85 (118)
128 PF15432 Sec-ASP3: Accessory S 25.0 4.3E+02 0.0092 23.0 7.7 54 59-120 5-62 (128)
129 PRK10525 cytochrome o ubiquino 23.8 1.6E+02 0.0034 30.0 5.5 62 214-296 152-213 (315)
130 MTH00038 COX2 cytochrome c oxi 23.5 3.4E+02 0.0074 26.2 7.6 75 454-560 140-215 (229)
131 PF14392 zf-CCHC_4: Zinc knuck 23.4 96 0.0021 21.8 2.8 31 520-550 15-45 (49)
132 MTH00117 COX2 cytochrome c oxi 23.1 2.9E+02 0.0063 26.6 7.0 61 214-295 141-201 (227)
133 PF11322 DUF3124: Protein of u 22.8 3.5E+02 0.0075 23.4 6.5 53 225-281 29-81 (125)
134 PF14874 PapD-like: Flagellar- 22.4 4.2E+02 0.009 21.3 8.5 60 216-287 15-81 (102)
135 TIGR03711 acc_sec_asp3 accesso 22.0 4.7E+02 0.01 23.0 7.3 56 58-120 15-73 (135)
136 MTH00076 COX2 cytochrome c oxi 21.4 2.9E+02 0.0062 26.7 6.6 61 214-295 141-201 (228)
137 MTH00139 COX2 cytochrome c oxi 21.3 3.3E+02 0.0072 26.2 7.1 77 453-561 139-216 (226)
138 PF14451 Ub-Mut7C: Mut7-C ubiq 21.2 79 0.0017 25.1 2.2 28 46-73 47-74 (81)
139 COG3241 Azurin [Energy product 21.1 1.1E+02 0.0024 26.1 3.1 41 251-291 91-135 (151)
140 MTH00154 COX2 cytochrome c oxi 20.8 3.1E+02 0.0067 26.5 6.7 61 214-295 141-201 (227)
141 COG4263 NosZ Nitrous oxide red 20.6 3E+02 0.0066 29.3 6.8 36 518-553 594-633 (637)
142 MTH00076 COX2 cytochrome c oxi 20.5 4E+02 0.0088 25.7 7.5 76 454-561 140-216 (228)
143 cd08058 MPN_euk_mb Mpr1p, Pad1 20.1 46 0.001 28.3 0.8 8 127-134 69-76 (119)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=4.3e-108 Score=886.94 Aligned_cols=538 Identities=70% Similarity=1.238 Sum_probs=441.4
Q ss_pred CceEEEEEEEEEEEeecCceeeEEEEEcCCCCCceEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCCCCCCcccc
Q 008085 27 SITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQC 106 (578)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~tq~ 106 (578)
+++|+|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|+|+++|+|||||++|.+++|+||+|++|||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~ 80 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQC 80 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEEECCCCcceEEecCccccccceeeeEEEeCCCCCCCCCCCCCCceeEEeeeecccchHHHHHHhhcCC
Q 008085 107 PIQTGQSYVYNFTISGQRGTLFWHAHISWLRATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSLQTG 186 (578)
Q Consensus 107 ~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g 186 (578)
+|+||++|+|+|++++++||||||||.+.+++||+|+|||+++.+.+++++..|+|++|+++||++.....++......|
T Consensus 81 pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLRATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred CcCCCCeEEEEEEecCCCeeEEEecCchhhhccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 99999999999998669999999999998889999999999987766777777999999999999998888776666566
Q ss_pred CCCCCCceEEEcCCCCCCCCCCCCcceeEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEeEEEEC
Q 008085 187 AGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLIT 266 (578)
Q Consensus 187 ~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~ 266 (578)
..+..++.++|||+.++++.|+....+.++|++|++|||||||+|....+.|+|+||+|+|||+||.+++|+.++++.|+
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~ 240 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIG 240 (539)
T ss_pred CCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEec
Confidence 55667899999999888888988778899999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEeCCCCCCcceEEEeccccCCCCCCCCcceEEEEEEecCCCCCCCcccccCCCCCCCCCCCCCCCcccccc
Q 008085 267 PGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPALNDTAFAFN 346 (578)
Q Consensus 267 pGeR~dvlv~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~ 346 (578)
+||||||+|++++++ |+|||++.+...+...+......|+|+|.+... . ..+.. +..+...+......
T Consensus 241 ~GqRydVlv~a~~~~--g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~-------~--~~p~~-~~~~~~~~~~~~~~ 308 (539)
T TIGR03389 241 PGQTTNVLLTADQSP--GRYFMAARPYMDAPGAFDNTTTTAILQYKGTSN-------S--AKPIL-PTLPAYNDTAAATN 308 (539)
T ss_pred CCCEEEEEEECCCCC--ceEEEEEeccccCccCCCCcceEEEEEECCCCC-------C--CCCCC-CCCCCCCchhhhhH
Confidence 999999999999876 999999987544432234467899999987542 1 01111 22222222211111
Q ss_pred cccccccccCCCCCCCCCcCcceEEEEEeccCCCCCCCCCCccCCCCCCceeeeecceeeeCCChhhhhhhhcCCCCccc
Q 008085 347 YTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVNNFSFILPSTALLQAHFFGQNGVYT 426 (578)
Q Consensus 347 ~~~~l~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ing~~~~~p~~~ll~~~~~~~~g~~~ 426 (578)
+...++.+..+.++..+|..+++++++.+.+...... ...+...+ +.++.|+||+++|..|.+|+|++.+..++|.+.
T Consensus 309 ~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~ 386 (539)
T TIGR03389 309 FSNKLRSLNSAQYPANVPVTIDRRLFFTIGLGLDPCP-NNTCQGPN-GTRFAASMNNISFVMPTTALLQAHYFGISGVFT 386 (539)
T ss_pred HHhhcccccccCCCCCCCCCCCeEEEEEeecccccCc-ccccccCC-CcEEEEEECCcccCCCCcchhhhhhcccCCccc
Confidence 1123334433333444455567776666554321100 00011122 456789999999998999988887776667777
Q ss_pred cCCCCCCceeccCCCCC-CCCCcccCCceEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCC
Q 008085 427 TDFPSTPLIKFNYTGTP-PNNTSVMNGTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRK 505 (578)
Q Consensus 427 ~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~ 505 (578)
.++++.+|+.+++++.. +.+...+.++.++.++.|++|||+|+|.+......||||||||+||||++|.|.|+......
T Consensus 387 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~ 466 (539)
T TIGR03389 387 TDFPANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPA 466 (539)
T ss_pred cCCccCCCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCcc
Confidence 77888888888766542 11222344678899999999999999975323458999999999999999999998765555
Q ss_pred CCCCCCCCcceeeeecCCcEEEEEEEecCceeEEEEeechhhhhccceEEEEEecCCCCCCCCCCCCCCCCCC
Q 008085 506 NFNLIDPVERNTVGVPSGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVLNGNLPNQKLPPPPADLPKC 578 (578)
Q Consensus 506 ~~~~~~p~~rDTv~v~~~~~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c 578 (578)
.+|+.||++|||+.|+++||++|||++||||.|+|||||+||+..||+++|.+.++.++.++++++|+.+|+|
T Consensus 467 ~~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 467 KFNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred ccccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 7899999999999999999999999999999999999999999999999999988877788999999999999
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=1.9e-106 Score=865.05 Aligned_cols=525 Identities=27% Similarity=0.449 Sum_probs=425.3
Q ss_pred ccccccCceEEEEEEEEEEEeecCc--eeeEEEEEcCCCCCceEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCC
Q 008085 21 AGLAVASITRHYKFDIKMQNVTRLC--HTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWAD 98 (578)
Q Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~~g--~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~D 98 (578)
+.+-|++++++|+|+|++..+++|| ..+.+++|||++|||+|++++||+|+|+|+|+|+++|+|||||++|..++|+|
T Consensus 19 ~~~~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~D 98 (596)
T PLN00044 19 APAGAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQD 98 (596)
T ss_pred CccccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCcccc
Confidence 4444678899999999999999999 55689999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCCeEEEEEEECCCCcceEEecCccccc-cceeeeEEEeCCCCCCCCCCCCC-CceeEEeeeecccchH
Q 008085 99 GPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKPY-KEVPIIFGEWFNADTE 176 (578)
Q Consensus 99 G~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~-~e~~l~~~d~~~~~~~ 176 (578)
|+++ |||||+||++|+|+|++++++||||||||...|+ +||+|+|||++++..++|+...+ +|.+|+++||++.+..
T Consensus 99 Gv~~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~ 177 (596)
T PLN00044 99 GVGG-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHR 177 (596)
T ss_pred CCCC-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHH
Confidence 9988 9999999999999999977899999999999988 89999999999877666665444 7999999999998876
Q ss_pred HHHHHhhcCCCCCCCCceEEEcCCCCCCCCCC----CCcceeEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCC
Q 008085 177 AIINQSLQTGAGPNVSDAYTINGLPGPLYNCS----AKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDA 252 (578)
Q Consensus 177 ~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~----~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG 252 (578)
++. .....|..+..++.++|||+....++|. +...+.++|++|++|||||||++....+.|+|+||+|+|||+||
T Consensus 178 ~~~-~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG 256 (596)
T PLN00044 178 ALR-RALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEG 256 (596)
T ss_pred HHH-HHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCC
Confidence 643 3444454455679999999965444553 33556899999999999999999999999999999999999999
Q ss_pred CCCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEeccc-cCCCCCCCCcceEEEEEEecCCCCCCCcccccCCCCCC
Q 008085 253 IYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY-ATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLM 331 (578)
Q Consensus 253 ~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~~-~~~~~~~~~~~~~ail~y~~~~~~p~~~~~~~~~~~~~ 331 (578)
.+++|+.++.|.|++||||||+|++++++ +++|||++... ..+. .++...+.|||+|.++.. .. ..+ .
T Consensus 257 ~~v~P~~vd~i~I~~GQRydVLV~a~q~~-~~~Y~i~a~~~~~~~~-~~~~~~~~AIl~Y~~~~~-------~~-~~~-~ 325 (596)
T PLN00044 257 SYTSQQNYTNLDIHVGQSYSFLLTMDQNA-STDYYVVASARFVDAA-VVDKLTGVAILHYSNSQG-------PA-SGP-L 325 (596)
T ss_pred cccCceeeeeEEEcCCceEEEEEECCCCC-CCceEEEEecccccCc-cccCcceeEEEEECCCCC-------CC-CCC-C
Confidence 99999999999999999999999999975 24899998642 2222 245667899999987542 10 111 2
Q ss_pred CCCCCC-CCCcccccccccccccccCCCCCCCCCcCcceEEEEEeccCCCCCCCCCCccCCCCCCceeeeecceeeeCCC
Q 008085 332 KPTLPA-LNDTAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVNNFSFILPS 410 (578)
Q Consensus 332 ~p~~p~-~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ing~~~~~p~ 410 (578)
|..|. +.++....++...++.+..++.+...|...++...+.+....... . .+.... .+++.|+|||.+|..|+
T Consensus 326 -P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~-~~~~~~-~g~~~~s~Nnvsf~~p~ 400 (596)
T PLN00044 326 -PDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQ--S-MAPELI-DGKLRATLNEISYIAPS 400 (596)
T ss_pred -CCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeec--c-cccccc-CCeEEEEECcccCCCCC
Confidence 43443 445443333334455443333333444444444444433211000 0 000011 23678999999999999
Q ss_pred hhhhhhhhcCCCCccccCCCCCCceeccCCCCCCCCCcccCCceEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEE
Q 008085 411 TALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFV 490 (578)
Q Consensus 411 ~~ll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~V 490 (578)
.|+|.+++.+.+|++..+|++.+|... ....+.++.++.|++|||+|+|.. ...||||||||+|+|
T Consensus 401 ~p~L~a~~~~~~gv~~~~fp~~pp~~~-----------~~~~t~v~~~~~n~~VeiV~qn~~---~~~HP~HLHGh~F~V 466 (596)
T PLN00044 401 TPLMLAQIFNVPGVFKLDFPNHPMNRL-----------PKLDTSIINGTYKGFMEIIFQNNA---TNVQSYHLDGYAFFV 466 (596)
T ss_pred CcchhhhhccCCCcccCCCCCCCCccc-----------cccCceEEEcCCCCEEEEEEeCCC---CCCCCeeEcCccEEE
Confidence 999988888888999988888777311 223578899999999999999953 368999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEecCceeEEEEeechhhhhccceEEEEEecCCCC-CCCCC
Q 008085 491 IGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVLNGNLP-NQKLP 569 (578)
Q Consensus 491 l~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~-~~~~~ 569 (578)
|++|.|.|++. +.+.+|+.||++|||+.|+++||++|||++||||+|+|||||+.|+..||.++|.|+++.+. .++++
T Consensus 467 vg~G~G~~~~~-~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~ 545 (596)
T PLN00044 467 VGMDYGLWTDN-SRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVL 545 (596)
T ss_pred EeecCCCCCCC-cccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCcccccc
Confidence 99999999975 56789999999999999999999999999999999999999999999999999999999876 78999
Q ss_pred CCCCCCCCC
Q 008085 570 PPPADLPKC 578 (578)
Q Consensus 570 ~~p~~~~~c 578 (578)
+||+++++|
T Consensus 546 ~pP~~~~~C 554 (596)
T PLN00044 546 PIPDNAIFC 554 (596)
T ss_pred CCCcccCcc
Confidence 999999999
No 3
>PLN02835 oxidoreductase
Probab=100.00 E-value=5.6e-104 Score=846.69 Aligned_cols=522 Identities=25% Similarity=0.434 Sum_probs=409.7
Q ss_pred CCCCchhHHHHHHHHHHHhcccccccCceEEEEEEEEEEEeecCceeeEEEEEcCCCCCceEEEecCCEEEEEEEecCCC
Q 008085 1 MGASLLPSSLAILCVWFLFPAGLAVASITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPN 80 (578)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~ 80 (578)
||+..-.-+|++++..+.--+...+.+++++|+|+|++..+++||+.+.+|+|||++|||+|++++||+|+|+|+|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~ 80 (539)
T PLN02835 1 MGSAVNLHLLLGVLAVLSSVSLVNGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQ 80 (539)
T ss_pred CchHHHHHHHHHHHHHHHHHhhhhccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCC
Confidence 45544445677776666555555556789999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEeecccccCCcCCCCCCCccccccCCCCeEEEEEEECCCCcceEEecCccccc-cceeeeEEEeCCCCCCCCCCCC
Q 008085 81 NISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKP 159 (578)
Q Consensus 81 ~~siH~HG~~~~~~~~~DG~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~ 159 (578)
+|+|||||+++..++||||+++ |||+|+||++|+|+|++++++||||||||...|+ +||+|+|||++++..++++..+
T Consensus 81 ~ttiHWHGl~~~~~~~~DGv~~-tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~ 159 (539)
T PLN02835 81 PFLLTWNGIKQRKNSWQDGVLG-TNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLP 159 (539)
T ss_pred CCcEEeCCcccCCCCCCCCCcc-CcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCC
Confidence 9999999999999999999999 9999999999999999867899999999999888 8999999998765555666677
Q ss_pred CCceeEEeeeecccchHHHHHHhhcCCCCCCCCceEEEcCCCCCCCCCCCCcceeEEEecCcEEEEEEEecCCCCeEEEE
Q 008085 160 YKEVPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFS 239 (578)
Q Consensus 160 ~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~ 239 (578)
|+|++|+++||++.....+... ...|.....++.+||||+.. +.++|++|++|||||||+|....+.|+
T Consensus 160 d~e~~l~l~Dw~~~~~~~~~~~-~~~g~~~~~~d~~liNG~~~----------~~~~v~~G~~yRlRliNa~~~~~~~f~ 228 (539)
T PLN02835 160 DGDFTLLVGDWYKTSHKTLQQR-LDSGKVLPFPDGVLINGQTQ----------STFSGDQGKTYMFRISNVGLSTSLNFR 228 (539)
T ss_pred CceEEEEeeccccCCHHHHHHH-hhcCCCCCCCceEEEccccC----------ceEEECCCCEEEEEEEEcCCCccEEEE
Confidence 9999999999999987665433 33454556789999999964 679999999999999999999999999
Q ss_pred EcCceEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEeccccCCCCCCCCcceEEEEEEecCCCCCC
Q 008085 240 IANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPR 319 (578)
Q Consensus 240 i~gh~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~p~ 319 (578)
|+||+|+|||+||.+++|..+++|.|++||||||+|++++++ |+|||++.....+ ......|+|+|.++.. ++
T Consensus 229 i~gH~~~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~--g~y~i~a~~~~~~----~~~~~~ail~Y~~~~~-~~ 301 (539)
T PLN02835 229 IQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSP--KDYYIVASTRFTR----QILTATAVLHYSNSRT-PA 301 (539)
T ss_pred ECCCEEEEEEECCccCCCceeeEEEECcCceEEEEEEcCCCC--CcEEEEEEccccC----CCcceEEEEEECCCCC-CC
Confidence 999999999999999999999999999999999999999876 9999998642221 2356799999987542 00
Q ss_pred CcccccCCCCCCCCCCCCCC---CcccccccccccccccCCCCCCC---C-CcCcceEEEEEeccCCCCCCCCCCccCCC
Q 008085 320 SSTVSIKKLPLMKPTLPALN---DTAFAFNYTTRLRSLANAQFPAN---V-PQTVNKRFFFTVGLGTNPCPKNQTCQGPN 392 (578)
Q Consensus 320 ~~~~~~~~~~~~~p~~p~~~---~~~~~~~~~~~l~~l~~~~~p~~---~-p~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 392 (578)
+. .+ |..|... +..........+.+....+.+.. . ....++++.+...+.. .
T Consensus 302 -------~~-~~-p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-----------~- 360 (539)
T PLN02835 302 -------SG-PL-PALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPL-----------I- 360 (539)
T ss_pred -------CC-CC-CCCCccccccccchhhccccccCccccCCCCCccccccccCCCceEEEeccccc-----------c-
Confidence 00 01 2222110 00000000001111111100000 0 0111333333221110 0
Q ss_pred CCCceeeeecceeeeCCChhhhhhhhcCCCCccccCC-CCCCceeccCCCCCCCCCcccCCceEEEecCCCEEEEEEecC
Q 008085 393 NSTKFAASVNNFSFILPSTALLQAHFFGQNGVYTTDF-PSTPLIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDT 471 (578)
Q Consensus 393 ~~~~~~~~ing~~~~~p~~~ll~~~~~~~~g~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~ 471 (578)
.++..|++||.+|..|+.|+|.+.+....+.+..+. ...++ +...+.++.++.++.|++|||+|+|.
T Consensus 361 -~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~t~~~~~~~~~~Veivi~N~ 428 (539)
T PLN02835 361 -NGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPS-----------GGPAFVATSVMQTSLHDFLEVVFQNN 428 (539)
T ss_pred -CCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCC-----------CCccccCCeEEEcCCCCEEEEEEECC
Confidence 134679999999998899988777665555554331 11111 11134568889999999999999996
Q ss_pred CCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEecCceeEEEEeechhhhhcc
Q 008085 472 STLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPGVWFMHCHFEVHISWG 551 (578)
Q Consensus 472 ~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~adnpG~w~~HCHil~H~d~G 551 (578)
. ...||||||||+||||++|.|.|++. ....+|+.||++|||+.|+++||++|||++||||.|+|||||++|+..|
T Consensus 429 ~---~~~HP~HLHGh~F~Vlg~G~g~~~~~-~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~G 504 (539)
T PLN02835 429 E---KTMQSWHLDGYDFWVVGYGSGQWTPA-KRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLG 504 (539)
T ss_pred C---CCCCCCCCCCccEEEEeccCCCCCcc-cccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcc
Confidence 4 46899999999999999999988765 3456789999999999999999999999999999999999999999999
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCCCCC
Q 008085 552 LKMAWIVLNGNLPNQKLPPPPADLPKC 578 (578)
Q Consensus 552 Mm~~~~V~~~~~~~~~~~~~p~~~~~c 578 (578)
|+++|+|+++.+..++++++|.++|+|
T Consensus 505 m~~~~~V~~~~~~~~~~~~~P~~~~~C 531 (539)
T PLN02835 505 QQFYLRVWNQVHSLANEYDIPDNALLC 531 (539)
T ss_pred cEEEEEEccCCCccccccCCCcccccc
Confidence 999999999998889999999999999
No 4
>PLN02991 oxidoreductase
Probab=100.00 E-value=6.7e-104 Score=841.38 Aligned_cols=494 Identities=27% Similarity=0.478 Sum_probs=401.8
Q ss_pred cCceEEEEEEEEEEEeecCceeeEEEEEcCCCCCceEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCCCCCCccc
Q 008085 26 ASITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQ 105 (578)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~tq 105 (578)
.+++++|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|+|+++|+|||||++|..++|+||+++ ||
T Consensus 25 ~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~-tQ 103 (543)
T PLN02991 25 EDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYG-TT 103 (543)
T ss_pred cCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCC-CC
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred cccCCCCeEEEEEEECCCCcceEEecCccccc-cceeeeEEEeCCCCCCCCCCCCCCceeEEeeeecccchHHHHHHhhc
Q 008085 106 CPIQTGQSYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSLQ 184 (578)
Q Consensus 106 ~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~ 184 (578)
|+|+||++|+|+|++++++||||||+|.+.|+ +||+|+|||++++..+.|+..+|+|++|+++||+++....+.... .
T Consensus 104 cpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~~-~ 182 (543)
T PLN02991 104 CPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQL-D 182 (543)
T ss_pred CccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHHh-h
Confidence 99999999999999866899999999999887 799999999998766666666788999999999998876654433 3
Q ss_pred CCCCCCCCceEEEcCCCCCCCCCCCCcceeEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEeEEE
Q 008085 185 TGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILL 264 (578)
Q Consensus 185 ~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~ 264 (578)
.+.....+|.+||||+.. .+.++|++|++|||||||+|....+.|+|+||+|+|||+||.+++|..+++|.
T Consensus 183 ~~~~~~~~d~~liNG~~~---------~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~ 253 (543)
T PLN02991 183 NGGKLPLPDGILINGRGS---------GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLD 253 (543)
T ss_pred cCCCCCCCCEEEEccCCC---------CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeEEE
Confidence 444455789999999953 26799999999999999999999999999999999999999999999999999
Q ss_pred ECCCceEEEEEEeCCCCCCcceEEEeccccCCCCCCCCcceEEEEEEecCCCCCCCcccccCCCCCCCCCCCCCCCcc--
Q 008085 265 ITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPALNDTA-- 342 (578)
Q Consensus 265 l~pGeR~dvlv~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~p~~~~~~~~~~~~~~p~~p~~~~~~-- 342 (578)
|++||||||+|++++++ |+|||++...... ......|||+|+++.. .. ..+ . |..|......
T Consensus 254 i~~GQRydvlv~a~~~~--~~y~i~~~~~~~~----~~~~~~AIl~Y~g~~~-------~~-~~~-~-p~~p~~~~~~~~ 317 (543)
T PLN02991 254 VHVGQSYSVLITADQPA--KDYYIVVSSRFTS----KILITTGVLHYSNSAG-------PV-SGP-I-PDGPIQLSWSFD 317 (543)
T ss_pred EcCCcEEEEEEECCCCC--CcEEEEEeeccCC----CCcceEEEEEeCCCCC-------CC-CCC-C-CCCCcccccccc
Confidence 99999999999999987 9999998753221 2346789999987642 00 001 1 2111111000
Q ss_pred cccccccccccccCCCCCCCCCcCc--------ceEEEEEeccCCCCCCCCCCccCCCCCCceeeeecceeeeCCChhhh
Q 008085 343 FAFNYTTRLRSLANAQFPANVPQTV--------NKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVNNFSFILPSTALL 414 (578)
Q Consensus 343 ~~~~~~~~l~~l~~~~~p~~~p~~~--------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ing~~~~~p~~~ll 414 (578)
........+.+. .+...|... ++.+.+...+.. . .+++.|+||+.+|..|++|+|
T Consensus 318 ~~~~~~~~l~p~----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~------------~-~g~~~~~iN~~s~~~p~~p~L 380 (543)
T PLN02991 318 QARAIKTNLTAS----GPRPNPQGSYHYGKINITRTIRLANSAGN------------I-EGKQRYAVNSASFYPADTPLK 380 (543)
T ss_pred chhhhhhcccCC----CCCCCCCccccccccccceeEEEeecccc------------c-CceEEEEECCCccCCCCCChh
Confidence 000111222221 112222221 111222211110 1 235689999999999999999
Q ss_pred hhhhcCCCCccccC-CCCCCceeccCCCCCCCCCcccCCceEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEe
Q 008085 415 QAHFFGQNGVYTTD-FPSTPLIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQ 493 (578)
Q Consensus 415 ~~~~~~~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~ 493 (578)
.+++.+.+|.|..+ +++.+|.. .....+.++.++.|++|||+|+|.. ...||||||||+||||++
T Consensus 381 ~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~ 446 (543)
T PLN02991 381 LADYFKIAGVYNPGSIPDQPTNG-----------AIFPVTSVMQTDYKAFVEIVFENWE---DIVQTWHLDGYSFYVVGM 446 (543)
T ss_pred hhhhhcccCccccccccccCCCC-----------ccccCCcEEEcCCCCEEEEEEeCCC---CCCCCeeeCCcceEEEEe
Confidence 88887777877654 44433311 1223467889999999999999964 368999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEecCceeEEEEeechhhhhccceEEEEEecCCCCCCCCCCCCC
Q 008085 494 GFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVLNGNLPNQKLPPPPA 573 (578)
Q Consensus 494 g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~ 573 (578)
|.|.|++. +...+|+.||++|||+.|+++||++|||++||||+|+|||||..|+..||..++.|+++.+..+++++||.
T Consensus 447 G~G~f~~~-~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~ 525 (543)
T PLN02991 447 ELGKWSAA-SRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPK 525 (543)
T ss_pred CCCCCCcc-cccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCc
Confidence 99999876 55789999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred CCCCC
Q 008085 574 DLPKC 578 (578)
Q Consensus 574 ~~~~c 578 (578)
++|+|
T Consensus 526 ~~~~C 530 (543)
T PLN02991 526 NALLC 530 (543)
T ss_pred ccCcc
Confidence 99999
No 5
>PLN02792 oxidoreductase
Probab=100.00 E-value=6.3e-104 Score=843.15 Aligned_cols=510 Identities=25% Similarity=0.426 Sum_probs=409.4
Q ss_pred cccCceEEEEEEEEEEEeecCceeeEEEEEcCCCCCceEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCCCCCCc
Q 008085 24 AVASITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYI 103 (578)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~ 103 (578)
....++.+|+|+|++..+++||+.+.+++||||+|||+|++++||+|+|+|+|+|+++++|||||++|+.++|+||+++
T Consensus 11 ~~~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~- 89 (536)
T PLN02792 11 VKADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYG- 89 (536)
T ss_pred hhcCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCC-
Confidence 3445667999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccCCCCeEEEEEEECCCCcceEEecCccccc-cceeeeEEEeCCCCCCCCCCCCCCceeEEeeeecccchHHHHHHh
Q 008085 104 TQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQS 182 (578)
Q Consensus 104 tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~ 182 (578)
+||||+||++|+|+|++++++||||||||...|+ +||+|+|||++++..+.+++..|+|++|+++||++.+...+.. .
T Consensus 90 tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~-~ 168 (536)
T PLN02792 90 TTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKK-I 168 (536)
T ss_pred CcCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHH-H
Confidence 9999999999999999877899999999999887 8999999999876555666677899999999999988766433 3
Q ss_pred hcCCCC-CCCCceEEEcCCCCCCCCCCCCcceeEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEe
Q 008085 183 LQTGAG-PNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTD 261 (578)
Q Consensus 183 ~~~g~~-~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~ 261 (578)
...+.. +..++.+||||+... ..+.++|++|++|||||||+|....+.|+|+||+|+|||+||.+++|..++
T Consensus 169 ~~~g~~~~~~~d~~liNG~~~~-------~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~ 241 (536)
T PLN02792 169 LDGGRKLPLMPDGVMINGQGVS-------YVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYT 241 (536)
T ss_pred hhccCcCCCCCCEEEEeccCCC-------CcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCccee
Confidence 333432 347899999999642 237899999999999999999999999999999999999999999999999
Q ss_pred EEEECCCceEEEEEEeCCCCCCcceEEEeccccCCCCCCCCcceEEEEEEecCCCCCCCcccccCCCCCCCCCCCCCCCc
Q 008085 262 ILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPALNDT 341 (578)
Q Consensus 262 ~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~p~~~~~~~~~~~~~~p~~p~~~~~ 341 (578)
+|.|++||||||+|++++++ |+|+|++.....+ ......|+|+|.++.. . .+.. |..|.+.+.
T Consensus 242 ~l~i~~GqRydVlV~a~~~~--g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~-------~---~~~~-p~~p~~~~~ 304 (536)
T PLN02792 242 SLDIHVGQTYSVLVTMDQPP--QNYSIVVSTRFIA----AKVLVSSTLHYSNSKG-------H---KIIH-ARQPDPDDL 304 (536)
T ss_pred EEEEccCceEEEEEEcCCCC--ceEEEEEEeccCC----CCCceEEEEEECCCCC-------C---CCCC-CCCCCcCCc
Confidence 99999999999999999986 9999999864222 2356789999987652 1 0111 223334333
Q ss_pred ccccccccccccccCCCCCCCCCcCcceEEEEEeccCCCCCCCCCCccCCCCCCceeeeecceeeeCCChhhhhhhhcCC
Q 008085 342 AFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVNNFSFILPSTALLQAHFFGQ 421 (578)
Q Consensus 342 ~~~~~~~~~l~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ing~~~~~p~~~ll~~~~~~~ 421 (578)
.....+...++.+..+..+..+|...++...+.++........... . ..++.|+|||.+|..|++|+|.+++..+
T Consensus 305 ~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~iN~~s~~~p~~p~L~a~~~~~ 379 (536)
T PLN02792 305 EWSIKQAQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILESSAAL----V-KRKQRYAINGVSFVPSDTPLKLADHFKI 379 (536)
T ss_pred cccccchhhhhhccCCCCCCCCCCcccccceeccceeEEecccccc----c-CceeEEEECCcccCCCCCchhhhhhhcc
Confidence 3222222222222222223344443332222221111100000000 1 2356799999999999999998887777
Q ss_pred CCccccC-CCCCCceeccCCCCCCCCCcccCCceEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCC
Q 008085 422 NGVYTTD-FPSTPLIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDP 500 (578)
Q Consensus 422 ~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~ 500 (578)
.|++..+ +++.+|...+ ...++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++
T Consensus 380 ~g~~~~~~~~~~p~~~~~----------~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~~~~ 446 (536)
T PLN02792 380 KGVFKVGSIPDKPRRGGG----------MRLDTSVMGAHHNAFLEIIFQNRE---KIVQSYHLDGYNFWVVGINKGIWSR 446 (536)
T ss_pred CCCcCcccCccCCcccCC----------CccCceEEEcCCCCEEEEEEECCC---CCCCCeeeCCCceEEEeecCCCCCc
Confidence 7877653 6666663211 123577899999999999999954 3589999999999999999999987
Q ss_pred CCCCCCCCCCCCCcceeeeecCCcEEEEEEEecCceeEEEEeechhhhhccceEEEEEecCCCCCCCCCCCCCCCCCC
Q 008085 501 SKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVLNGNLPNQKLPPPPADLPKC 578 (578)
Q Consensus 501 ~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c 578 (578)
. +...+|+.||++||||.|+++||++|||++||||+|+|||||.+|+..||.++|.|+++.+..+++++||+++++|
T Consensus 447 ~-~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~C 523 (536)
T PLN02792 447 A-SRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLC 523 (536)
T ss_pred c-cccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCcc
Confidence 4 5678999999999999999999999999999999999999999999999999999999998889999999999999
No 6
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=6.6e-103 Score=835.50 Aligned_cols=519 Identities=27% Similarity=0.466 Sum_probs=401.9
Q ss_pred chhHHHHHHHHHHHhcccccccCceEEEEEEEEEEEeecCceeeEEEEEcCCCCCceEEEecCCEEEEEEEecCCCCeeE
Q 008085 5 LLPSSLAILCVWFLFPAGLAVASITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISI 84 (578)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~si 84 (578)
..--+++++++.+.++.+. +++++|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|+|+++|+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~---a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~tti 81 (545)
T PLN02168 5 FVEVFVLISLVILELSYAF---APIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLM 81 (545)
T ss_pred ehhHHHHHHHHHHHhhhcc---ccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccE
Confidence 3344566666666655443 5889999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccccCCcCCCCCCCccccccCCCCeEEEEEEECCCCcceEEecCccccc-cceeeeEEEeCCCCCCCCCCCCCCce
Q 008085 85 HWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKPYKEV 163 (578)
Q Consensus 85 H~HG~~~~~~~~~DG~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~ 163 (578)
||||+++..++|+||+|+ |||||+||++|+|+|++++++||||||||.+.|+ +||+|+|||+++++.+.++.+.++|+
T Consensus 82 HWHGl~~~~~~~~DGv~g-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~ 160 (545)
T PLN02168 82 TWNGLQLRKNSWQDGVRG-TNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEY 160 (545)
T ss_pred eeCCccCCCCCCcCCCCC-CcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCccccee
Confidence 999999999999999999 9999999999999999866899999999999887 89999999999877666776778999
Q ss_pred eEEeeeecccchHHHHHHhhcCCCCCCCCceEEEcCCCCCCCCCCCCcceeEEEecCcEEEEEEEecCCCCeEEEEEcCc
Q 008085 164 PIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANH 243 (578)
Q Consensus 164 ~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh 243 (578)
+|+++||++.+...+.. ....+.....++.+||||+.. ..+.++|++|++|||||||+|....+.|+|+||
T Consensus 161 ~l~l~Dw~~~~~~~~~~-~~~~g~~~~~~d~~liNG~~~--------~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH 231 (545)
T PLN02168 161 DILIGDWFYADHTVMRA-SLDNGHSLPNPDGILFNGRGP--------EETFFAFEPGKTYRLRISNVGLKTCLNFRIQDH 231 (545)
T ss_pred eEEEEecCCCCHHHHHh-hhhcCCCCCCCCEEEEeccCC--------CcceEEeCCCCEEEEEEEeccCCceEEEEECCc
Confidence 99999999987655433 223343345679999999963 236899999999999999999999999999999
Q ss_pred eEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCCCCC--cceEEEeccccCCCCCCCCcceEEEEEEecCCCCCCCc
Q 008085 244 SVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPN--ATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSS 321 (578)
Q Consensus 244 ~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~--g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~p~~~ 321 (578)
+|+|||+||.+++|..+++|.|++||||||+|++++.+.| ++|||++.....+ ....+.|+|+|+++..
T Consensus 232 ~~tVIa~DG~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~----~~~~~~ail~Y~~~~~----- 302 (545)
T PLN02168 232 DMLLVETEGTYVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTD----AYLGGVALIRYPNSPL----- 302 (545)
T ss_pred EEEEEEECCeECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccC----CCcceEEEEEECCCCC-----
Confidence 9999999999999999999999999999999999875433 4899999863222 2356789999987542
Q ss_pred ccccCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCcC--------cceEEEEEeccCCCCCCCCCCccCCCC
Q 008085 322 TVSIKKLPLMKPTLPALNDTAFAFNYTTRLRSLANAQFPANVPQT--------VNKRFFFTVGLGTNPCPKNQTCQGPNN 393 (578)
Q Consensus 322 ~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~--------~d~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (578)
.. ..+ . |..|...+.....+...+++....+..+...|.. .++.+.+...+ . ..
T Consensus 303 --~~-~~p-~-p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~----------~~- 364 (545)
T PLN02168 303 --DP-VGP-L-PLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDV--M----------LS- 364 (545)
T ss_pred --CC-CCC-C-CCCCcccccccccchhhhhhhcCCCCCCCCCCcccccccccccceeEEecccc--c----------cc-
Confidence 10 011 1 2233333322211111112111111111122221 11222221100 0 01
Q ss_pred CCceeeeecceeeeCCChhhhhhhhcCCCCccccC-CCCCCceeccCCCCCCCCCcccCCceEEEecCCCEEEEEEecCC
Q 008085 394 STKFAASVNNFSFILPSTALLQAHFFGQNGVYTTD-FPSTPLIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTS 472 (578)
Q Consensus 394 ~~~~~~~ing~~~~~p~~~ll~~~~~~~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~ 472 (578)
.+...|+|||.+|..|++|++.+.+...++.+..+ ++..+|.. ....++.++.++.|++|||+|+|..
T Consensus 365 ~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~-----------~~~~~~~v~~~~~~~~VeiViqn~~ 433 (545)
T PLN02168 365 SGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNK-----------TPTLGTSVVDIHYKDFYHIVFQNPL 433 (545)
T ss_pred CceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcC-----------ccccCceEEEecCCCEEEEEEeCCC
Confidence 23567999999999999998877655443433322 33333310 0122467889999999999999964
Q ss_pred CCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEecCceeEEEEeechhhhhccc
Q 008085 473 TLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPGVWFMHCHFEVHISWGL 552 (578)
Q Consensus 473 ~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~adnpG~w~~HCHil~H~d~GM 552 (578)
...||||||||+||||++|.|.|++. ....+|+.||++|||+.|+++||++|||++||||.|+|||||++|++.||
T Consensus 434 ---~~~HP~HLHGh~F~Vvg~g~g~~~~~-~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~ 509 (545)
T PLN02168 434 ---FSLESYHIDGYNFFVVGYGFGAWSES-KKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQ 509 (545)
T ss_pred ---CCCCCeeeCCCceEEEECCCCCCCcc-ccccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecC
Confidence 36899999999999999999999865 34578999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCC------CCCCCCCCCCCCCCC
Q 008085 553 KMAWIVLNGNL------PNQKLPPPPADLPKC 578 (578)
Q Consensus 553 m~~~~V~~~~~------~~~~~~~~p~~~~~c 578 (578)
.+.++|+++.+ ..++++++|+++++|
T Consensus 510 gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~c 541 (545)
T PLN02168 510 ELYMRVKGEGEEDPSTIPVRDENPIPGNVIRC 541 (545)
T ss_pred cEEEEEEcccccCccccccccccCCChhhccc
Confidence 99998865443 256788999999999
No 7
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=9.7e-103 Score=838.08 Aligned_cols=509 Identities=25% Similarity=0.450 Sum_probs=400.6
Q ss_pred ccccCceEEEEEEEEEEEeecCceeeEEEEEcCCCCCceEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCCCCCC
Q 008085 23 LAVASITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAY 102 (578)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~ 102 (578)
..|.+++++|+|+|++..+++||..+.+++|||++|||+|++++||+|+|+|+|+|+++|+|||||++|..++|+||+|+
T Consensus 21 ~~~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~ 100 (552)
T PLN02354 21 VRAEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPG 100 (552)
T ss_pred hhccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcC
Confidence 33445789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCeEEEEEEECCCCcceEEecCccccc-cceeeeEEEeCCCCCCCCCCCCCCceeEEeeeecccchHHHHHH
Q 008085 103 ITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQ 181 (578)
Q Consensus 103 ~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~ 181 (578)
|||+|+||++|+|+|++.+++||||||||...|+ +||+|+|||+++...+.+++..++|++|+++||+++....+..
T Consensus 101 -TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~- 178 (552)
T PLN02354 101 -TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALKK- 178 (552)
T ss_pred -CcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHHH-
Confidence 9999999999999999867899999999999998 8999999999987666777677899999999999988766543
Q ss_pred hhcCCCCCCCCceEEEcCCCCCCCCCCCCcceeEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEe
Q 008085 182 SLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTD 261 (578)
Q Consensus 182 ~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~ 261 (578)
....|.....++.+||||+....+. ...+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|..++
T Consensus 179 ~~~~g~~~~~~d~~liNG~~~~~~~---~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~ 255 (552)
T PLN02354 179 FLDSGRTLGRPDGVLINGKSGKGDG---KDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYD 255 (552)
T ss_pred HHhcCCCCCCCCeEEEeCCcCCCCC---CCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCccee
Confidence 3334444456799999999753321 2357899999999999999999999999999999999999999999999999
Q ss_pred EEEECCCceEEEEEEeCCCCCCcceEEEeccccCCCCCCCCcceEEEEEEecCCCCCCCcccccCCCCCCCCCCCC-CC-
Q 008085 262 ILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPA-LN- 339 (578)
Q Consensus 262 ~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~p~~~~~~~~~~~~~~p~~p~-~~- 339 (578)
+|.|++||||||+|++++++ |+|+|++...... ......|+|+|.++.. .. .+.. |..+. +.
T Consensus 256 ~l~i~~GqRydVlv~a~~~~--g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~-------~~--~~~~-p~~~~~~~~ 319 (552)
T PLN02354 256 SLDVHVGQCFSVLVTANQAP--KDYYMVASTRFLK----KVLTTTGIIRYEGGKG-------PA--SPEL-PEAPVGWAW 319 (552)
T ss_pred EEEEccCceEEEEEECCCCC--CcEEEEEeccccC----CCccEEEEEEECCCCC-------CC--CCCC-CCCCccccc
Confidence 99999999999999999877 9999998742221 3356799999987642 00 0111 21111 00
Q ss_pred CcccccccccccccccCCCCCCCC----CcCcceEEEEEeccCCCCCCCCCCccCCCCCCceeeeecceeeeCCChhhhh
Q 008085 340 DTAFAFNYTTRLRSLANAQFPANV----PQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVNNFSFILPSTALLQ 415 (578)
Q Consensus 340 ~~~~~~~~~~~l~~l~~~~~p~~~----p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ing~~~~~p~~~ll~ 415 (578)
.......+...+.+....+.+... ....++.+.+...+.. . .+.+.|++||.+|..|++|+|.
T Consensus 320 ~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------------~-~g~~~~~iNn~s~~~p~~P~L~ 386 (552)
T PLN02354 320 SLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASK------------V-DGKLRYALNGVSHVDPETPLKL 386 (552)
T ss_pred chhhhhhhhhcccccccCCCCCCccccccccccceEEEeccccc------------C-CceEEEEECCccCCCCCCChHH
Confidence 000000111111111111101000 0112233333321110 1 2356799999999999999888
Q ss_pred hhhcCC-CCccccC-CCCCCceeccCCCCCCCCCcccCCceEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEe
Q 008085 416 AHFFGQ-NGVYTTD-FPSTPLIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQ 493 (578)
Q Consensus 416 ~~~~~~-~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~ 493 (578)
+.+.++ .|.+..+ ++..+|..++ ....++.++.++.|++|||+|+|.. ...||||||||+||||++
T Consensus 387 ~~~~~~~~g~~~~~~~~~~pp~~~~---------~~~~~~~v~~~~~~~~VeiVi~n~~---~~~HP~HLHGh~F~Vlg~ 454 (552)
T PLN02354 387 AEYFGVADKVFKYDTIKDNPPAKIT---------KIKIQPNVLNITFRTFVEIIFENHE---KSMQSWHLDGYSFFAVAV 454 (552)
T ss_pred hhhhcccCCccccCccccCCccccC---------ccccCCeeEEcCCCCEEEEEEeCCC---CCCCCCcCCCccEEEEee
Confidence 766543 3555433 3334442211 0234567889999999999999964 468999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEecCceeEEEEeechhhhhccceEEEEEecCCCCCCCCCCCCC
Q 008085 494 GFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVLNGNLPNQKLPPPPA 573 (578)
Q Consensus 494 g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~ 573 (578)
|.|.|++. ....+|+.||++|||+.|+++||++|||++||||+|+|||||..|+..||.+.|.|.++.+..++++++|+
T Consensus 455 G~G~~~~~-~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~ 533 (552)
T PLN02354 455 EPGTWTPE-KRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPE 533 (552)
T ss_pred cCCCCCcc-ccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCc
Confidence 99999875 35678999999999999999999999999999999999999999999999999999998887888888999
Q ss_pred CCCCC
Q 008085 574 DLPKC 578 (578)
Q Consensus 574 ~~~~c 578 (578)
+++.|
T Consensus 534 ~~~~C 538 (552)
T PLN02354 534 NALLC 538 (552)
T ss_pred ccccc
Confidence 99999
No 8
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.4e-102 Score=823.77 Aligned_cols=539 Identities=49% Similarity=0.849 Sum_probs=473.2
Q ss_pred HHHHHhcccccccCceEEEEEEEEEEEeecCceeeEEEEEcCCCCCceEEEecCCEEEEEEEecCCCCeeEEeecccccC
Q 008085 14 CVWFLFPAGLAVASITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLL 93 (578)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~ 93 (578)
+..+++..+..|.++++.|++++++..+.++|..+.++++||++|||+|++++||+|+|+|.|+++++++|||||+++..
T Consensus 13 ~~~~~~~~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~k 92 (563)
T KOG1263|consen 13 CGSLLLVFFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRK 92 (563)
T ss_pred HHHHHHHHHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccC
Confidence 33333445667788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCccccccCCCCeEEEEEEECCCCcceEEecCccccc-cceeeeEEEeCCCCCCCCCCCCCCceeEEeeeecc
Q 008085 94 SGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFN 172 (578)
Q Consensus 94 ~~~~DG~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~ 172 (578)
++|+|| +.+|||||+||++|+|+|+++++.||||||+|...++ +|++|+|||+++...++|++++|+|++|+++||++
T Consensus 93 n~w~DG-~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~ 171 (563)
T KOG1263|consen 93 NPWQDG-VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYK 171 (563)
T ss_pred CccccC-CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeecc
Confidence 999999 8999999999999999999988999999999999999 79999999999998888998999999999999999
Q ss_pred c-chHHHHHHhhcCCCCCCCCceEEEcCCCCCCCCCCCCcceeEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeC
Q 008085 173 A-DTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVD 251 (578)
Q Consensus 173 ~-~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~D 251 (578)
+ +...+...+...+..+..+|..+|||+.+..++| .++++|++||+|||||+|+|....+.|+|++|+|+||++|
T Consensus 172 ~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~----~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~D 247 (563)
T KOG1263|consen 172 NLNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNC----TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVD 247 (563)
T ss_pred ccCHHHHHHhhccCCCCCCCCCceEECCCCCcccCc----eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEec
Confidence 5 8888777777777766668999999999888888 5899999999999999999999999999999999999999
Q ss_pred CCCCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEeccccCCCCCCCCcceEEEEEEecCCCCCCCcccccCCCCCC
Q 008085 252 AIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLM 331 (578)
Q Consensus 252 G~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~p~~~~~~~~~~~~~ 331 (578)
|.+++|..+++|.|.||||+||+|++++.+ ++|+|++.++.++..........++++|.++.. ++ +. ..+..
T Consensus 248 g~y~~p~~~~~l~i~~GQ~~~vLvtadq~~--~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~-~~----s~-~~~~~ 319 (563)
T KOG1263|consen 248 GAYTKPFTTDSLDIHPGQTYSVLLTADQSP--GDYYIAASPYFDASNVPFNLTTTGILRYSGSTH-PA----SE-KLPIY 319 (563)
T ss_pred ceEEeeeeeceEEEcCCcEEEEEEeCCCCC--CcEEEEEEeeeccCCcceeeeEEEEEEEeCCcc-cC----cc-cCccc
Confidence 999999999999999999999999999998 799999998766532112678999999998442 11 10 11222
Q ss_pred CCCCCCCCCcccccccccccccccCCCCCCCCCcCcceEEEEEeccCCCCCCCCCCccCCCCCCceeeeecceeeeCCCh
Q 008085 332 KPTLPALNDTAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVNNFSFILPST 411 (578)
Q Consensus 332 ~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ing~~~~~p~~ 411 (578)
+..|...+......+...++.+....++...|.+.++...+.++.+...++... .+ +++..++||+.+|..|+.
T Consensus 320 -~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~----~~-~~~~~~siN~isf~~P~t 393 (563)
T KOG1263|consen 320 -PFLPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDN----KN-NGKLRASINNISFVTPKT 393 (563)
T ss_pred -ccCCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCC----CC-CcEEEEEEcceEEECCCC
Confidence 334555565666666778888877778888999999888888777665553211 33 567889999999999988
Q ss_pred h-hhhhhhcCCCCccccCCCCCCceeccCCCCCCCCCcccCCceEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEE
Q 008085 412 A-LLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFV 490 (578)
Q Consensus 412 ~-ll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~V 490 (578)
| ++.+++....|.+..+++..|+..+++++ .+.++.++.++.++.||++++|.+......||||||||.|||
T Consensus 394 p~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~-------~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~V 466 (563)
T KOG1263|consen 394 PSLLAAYFKNIPGYFTNDFPDKPPIKFDYTG-------PTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYV 466 (563)
T ss_pred chhhhhhhccCCccccCccCCCCccccCCcc-------ccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEE
Confidence 5 67777777778888899999888777665 467899999999999999999988767788999999999999
Q ss_pred EEecCCCCCCCCCC-CCCCCCCCCcceeeeecCCcEEEEEEEecCceeEEEEeechhhhhccceEEEEEecCCCCCCCCC
Q 008085 491 IGQGFGNYDPSKDR-KNFNLIDPVERNTVGVPSGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVLNGNLPNQKLP 569 (578)
Q Consensus 491 l~~g~g~~~~~~~~-~~~~~~~p~~rDTv~v~~~~~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~ 569 (578)
++.|.|.|++..+. ..+|+.+|+.||||.|+||||++|||.|||||+|+|||||++|...||.++|+|.++.+..+++.
T Consensus 467 vg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~ 546 (563)
T KOG1263|consen 467 VGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEY 546 (563)
T ss_pred EEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCC
Confidence 99999999995455 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q 008085 570 PPPADLPKC 578 (578)
Q Consensus 570 ~~p~~~~~c 578 (578)
++|.+.++|
T Consensus 547 ~~P~~~~~c 555 (563)
T KOG1263|consen 547 PPPKNLPKC 555 (563)
T ss_pred CCCCCcccc
Confidence 999999999
No 9
>PLN02604 oxidoreductase
Probab=100.00 E-value=4.3e-97 Score=802.51 Aligned_cols=519 Identities=32% Similarity=0.569 Sum_probs=395.2
Q ss_pred ccccccCceEEEEEEEEEEEeecCceeeEEEEEcCCCCCceEEEecCCEEEEEEEecC-CCCeeEEeecccccCCcCCCC
Q 008085 21 AGLAVASITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHV-PNNISIHWHGIRQLLSGWADG 99 (578)
Q Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~~DG 99 (578)
+...+.+++++|+|+|++..+++||+.+.+|+|||++|||+|++++||+|+|+|+|++ +++++|||||+++.+++|+||
T Consensus 16 ~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG 95 (566)
T PLN02604 16 NFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDG 95 (566)
T ss_pred HhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccC
Confidence 4444557899999999999999999999999999999999999999999999999998 589999999999999999999
Q ss_pred CCCccccccCCCCeEEEEEEECCCCcceEEecCccccc-cceeeeEEEeCCCCCCCCCCCCCCceeEEeeeecccchHHH
Q 008085 100 PAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAI 178 (578)
Q Consensus 100 ~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~ 178 (578)
+++++||+|+||++++|+|++ +++||||||||...++ +||+|+|||+++.+...++ .+|+|.+|+++||++....+.
T Consensus 96 ~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~Dw~~~~~~~~ 173 (566)
T PLN02604 96 TEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILTDWYHKSTYEQ 173 (566)
T ss_pred CCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEeeccccCCHHHH
Confidence 999999999999999999998 7999999999998887 8999999999886544455 358899999999999887665
Q ss_pred HHHhhcC-CCCCCCCceEEEcCCCCCCCCCC----------------C-CcceeEEEecCcEEEEEEEecCCCCeEEEEE
Q 008085 179 INQSLQT-GAGPNVSDAYTINGLPGPLYNCS----------------A-KDTFKLKVKPGKTYLLRLINAALNDELFFSI 240 (578)
Q Consensus 179 ~~~~~~~-g~~~~~~~~~liNG~~~~~~~~~----------------~-~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i 240 (578)
....... ......++..+|||+.. +.|. + ...+.+++++|++|||||||+|+.+.+.|+|
T Consensus 174 ~~~~~~~~~~~~~~~d~~liNG~G~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~si 251 (566)
T PLN02604 174 ALGLSSIPFDWVGEPQSLLIQGKGR--YNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSALSFQI 251 (566)
T ss_pred HHhhccCCCccCCCCCceEEcCCCC--CCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEeccccceEEEEE
Confidence 4433221 11123568999999964 3332 1 1345899999999999999999999999999
Q ss_pred cCceEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEeccccCCCCCCCCcceEEEEEEecCCCCCCC
Q 008085 241 ANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRS 320 (578)
Q Consensus 241 ~gh~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~p~~ 320 (578)
+||+|+|||+||.+++|++++.|.|++||||||+|++++.+ +++||||+.....+. +...+.|||+|.+...
T Consensus 252 dgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~-~~~y~ira~~~~~~~---~~~~~~aIL~Y~~~~~---- 323 (566)
T PLN02604 252 EGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDP-SRNYWVTTSVVSRNN---TTPPGLAIFNYYPNHP---- 323 (566)
T ss_pred CCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCC-CCCEEEEEecccCCC---CCcceeEEEEECCCCC----
Confidence 99999999999999999999999999999999999999865 358999987543321 2356799999986431
Q ss_pred cccccCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCcCcceEEEEEeccCCCCCCCCCCccCCCCCCceeee
Q 008085 321 STVSIKKLPLMKPTLPALNDTAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAAS 400 (578)
Q Consensus 321 ~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (578)
.. .++...+..+.+.+..........+..+.. .+...+...++++.+....... ...+.|+
T Consensus 324 ---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~-------------~~~~~w~ 384 (566)
T PLN02604 324 ---RR-SPPTVPPSGPLWNDVEPRLNQSLAIKARHG--YIHPPPLTSDRVIVLLNTQNEV-------------NGYRRWS 384 (566)
T ss_pred ---CC-CCCCCCCCCCcccccchhhcchhccccccc--CcCCCCCCCCeEEEEecccccc-------------CCeEEEE
Confidence 00 011110111222221111100011111111 1112233456665543322110 2346799
Q ss_pred ecceeeeCCChhhhhhhhcCCCCccccCCCCCCceecc---CCCC-CCCCCcccCCceEEEecCCCEEEEEEecCCCC--
Q 008085 401 VNNFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFN---YTGT-PPNNTSVMNGTKVVVLPFNASVELVMQDTSTL-- 474 (578)
Q Consensus 401 ing~~~~~p~~~ll~~~~~~~~g~~~~~~~~~~p~~~~---~~~~-~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~-- 474 (578)
||+.+|..|..|+|.+.+....+.++.+. ++..++ ++.. ...+...+.++.++.++.|++||++|+|....
T Consensus 385 in~~~~~~p~~p~L~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~ 461 (566)
T PLN02604 385 VNNVSFNLPHTPYLIALKENLTGAFDQTP---PPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNA 461 (566)
T ss_pred ECcccCCCCCCchhHhhhhcCCCcccCCC---CCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccC
Confidence 99999998888887776655555554221 111111 0000 00111134467789999999999999996421
Q ss_pred -CCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEecCceeEEEEeechhhhhccce
Q 008085 475 -GAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPGVWFMHCHFEVHISWGLK 553 (578)
Q Consensus 475 -~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~adnpG~w~~HCHil~H~d~GMm 553 (578)
....||||||||+||||++|.|.|++..+...+|+.||++|||+.|++++|++|||++||||.|+|||||+||+..||+
T Consensus 462 ~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~ 541 (566)
T PLN02604 462 NNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMG 541 (566)
T ss_pred CCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCE
Confidence 2467999999999999999999998776667899999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCCC
Q 008085 554 MAWIVLNGNLPNQKLPPPPADLPKC 578 (578)
Q Consensus 554 ~~~~V~~~~~~~~~~~~~p~~~~~c 578 (578)
++|.+. .++++++|.++++|
T Consensus 542 ~v~~e~-----~~~~~~~p~~~~~C 561 (566)
T PLN02604 542 VVFEEG-----IERVGKLPSSIMGC 561 (566)
T ss_pred EEEeeC-----hhhccCCCCCcCcc
Confidence 999653 34677899999999
No 10
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=1e-96 Score=797.43 Aligned_cols=512 Identities=30% Similarity=0.567 Sum_probs=382.4
Q ss_pred CceEEEEEEEEEEEeecCceeeEEEEEcCCCCCceEEEecCCEEEEEEEecCC-CCeeEEeecccccCCcCCCCCCCccc
Q 008085 27 SITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVP-NNISIHWHGIRQLLSGWADGPAYITQ 105 (578)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DG~~~~tq 105 (578)
+++++|+|++++..+++||..+.+++|||++|||+|++++||+|+|+|+|+|+ ++|+|||||+++.+++|+||+|+++|
T Consensus 21 ~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq 100 (574)
T PLN02191 21 AAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQ 100 (574)
T ss_pred cceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCcccc
Confidence 47899999999999999999999999999999999999999999999999997 78999999999999999999999999
Q ss_pred cccCCCCeEEEEEEECCCCcceEEecCccccc-cceeeeEEEeCCCCCCCCCCCCCCceeEEeeeecccchHHHHHHhhc
Q 008085 106 CPIQTGQSYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSLQ 184 (578)
Q Consensus 106 ~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~ 184 (578)
|+|+||++|+|+|++ .++||||||||...|+ +||+|+|||+++.+...++ .+|+|++|+++||++............
T Consensus 101 ~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~ 178 (574)
T PLN02191 101 CAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHESIPSQELGLSS 178 (574)
T ss_pred CCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCChHHHHHhhcc
Confidence 999999999999998 7899999999999887 8999999999765433222 358999999999999865433222211
Q ss_pred C-CCCCCCCceEEEcCCCCCCCCCC-------------------CC-cceeEEEecCcEEEEEEEecCCCCeEEEEEcCc
Q 008085 185 T-GAGPNVSDAYTINGLPGPLYNCS-------------------AK-DTFKLKVKPGKTYLLRLINAALNDELFFSIANH 243 (578)
Q Consensus 185 ~-g~~~~~~~~~liNG~~~~~~~~~-------------------~~-~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh 243 (578)
. ......++.+||||+.. +.|. +. ...+++|++|++|||||||+|+...+.|+|+||
T Consensus 179 ~~~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH 256 (574)
T PLN02191 179 KPMRWIGEAQSILINGRGQ--FNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGH 256 (574)
T ss_pred CCCCcCCCCCceEECCCCC--CCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCC
Confidence 1 11124578999999864 2332 11 223699999999999999999999999999999
Q ss_pred eEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEeccccCCCCCCCCcceEEEEEEecCCCCCCCccc
Q 008085 244 SVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTV 323 (578)
Q Consensus 244 ~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~p~~~~~ 323 (578)
+|+|||+||.+++|+.+++|.|++||||||+|++++.+ +++||||+.....+. ......|+|+|.+...
T Consensus 257 ~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~-~~~y~ira~~~~~~~---~~~~~~ail~Y~~~~~------- 325 (574)
T PLN02191 257 KLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDP-SQNYYISVGVRGRKP---NTTQALTILNYVTAPA------- 325 (574)
T ss_pred eEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCC-CCCEEEEEEccccCC---CCCCceEEEEECCCCC-------
Confidence 99999999999999999999999999999999999864 258999997533221 2224569999987552
Q ss_pred ccCCCCCC-CCCCCCCCCcccccccccccccccCCCCCCCCCc-CcceEEEEEeccCCCCCCCCCCccCCCCCCceeeee
Q 008085 324 SIKKLPLM-KPTLPALNDTAFAFNYTTRLRSLANAQFPANVPQ-TVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASV 401 (578)
Q Consensus 324 ~~~~~~~~-~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 401 (578)
.. .+.. .|..|.+.+......+ ....+.....+ ..|. ..+..+.+... .. . ....+|++
T Consensus 326 ~~--~p~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~-~~p~~~~~~~~~~~~~--~~-----------~-~~~~~~~~ 386 (574)
T PLN02191 326 SK--LPSSPPPVTPRWDDFERSKNF--SKKIFSAMGSP-SPPKKYRKRLILLNTQ--NL-----------I-DGYTKWAI 386 (574)
T ss_pred CC--CCCCCCCCCCcccccchhhcc--cccccccccCC-CCCCcccceEEEeccc--ce-----------e-CCeEEEEE
Confidence 10 0100 0112223222111111 11111111111 1221 23444433211 10 0 22347999
Q ss_pred cceeeeCCChhhhhhhhcCCCCccccCCCCCC-ceeccCCCCCCCCCcccCCceEEEecCCCEEEEEEecCCCC---CCC
Q 008085 402 NNFSFILPSTALLQAHFFGQNGVYTTDFPSTP-LIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTSTL---GAE 477 (578)
Q Consensus 402 ng~~~~~p~~~ll~~~~~~~~g~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~---~~~ 477 (578)
|+.+|..|..|+|.+.+.+.++.+..+.+... +..|+..+... ....+.++.++.++.|++|||+|+|.... ...
T Consensus 387 n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~ 465 (574)
T PLN02191 387 NNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPP-FPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSE 465 (574)
T ss_pred CcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCc-cccccccceeEEecCCCEEEEEEECCCcccCCCCC
Confidence 99999989888777765555554444332211 11121111100 00123466788999999999999996421 257
Q ss_pred CCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEecCceeEEEEeechhhhhccceEEEE
Q 008085 478 SHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWI 557 (578)
Q Consensus 478 ~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~ 557 (578)
.||||||||+||||++|.|.|++..+...+|+.||++|||+.|+++||++|||++||||.|+|||||+||+..||+++|.
T Consensus 466 ~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~ 545 (574)
T PLN02191 466 IHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFA 545 (574)
T ss_pred CCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEe
Confidence 89999999999999999999987544567899999999999999999999999999999999999999999999999995
Q ss_pred EecCCCCCCCCCCCCCCCCCC
Q 008085 558 VLNGNLPNQKLPPPPADLPKC 578 (578)
Q Consensus 558 V~~~~~~~~~~~~~p~~~~~c 578 (578)
. + .++++++|+++++|
T Consensus 546 e--~---~~~~~~~p~~~~~C 561 (574)
T PLN02191 546 E--G---LNRIGKIPDEALGC 561 (574)
T ss_pred c--C---hhhccCCCcchhhh
Confidence 3 2 23455578889999
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=1e-96 Score=797.50 Aligned_cols=512 Identities=31% Similarity=0.566 Sum_probs=388.4
Q ss_pred eEEEEEEEEEEEeecCceeeEEEEEcCCCCCceEEEecCCEEEEEEEecCC-CCeeEEeecccccCCcCCCCCCCccccc
Q 008085 29 TRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVP-NNISIHWHGIRQLLSGWADGPAYITQCP 107 (578)
Q Consensus 29 ~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DG~~~~tq~~ 107 (578)
+|+|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|.|. ++++|||||+++.+++||||+++++||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 489999999999999999999999999999999999999999999999995 8999999999999999999999999999
Q ss_pred cCCCCeEEEEEEECCCCcceEEecCccccc-cceeeeEEEeCCCCCCCCCCCCCCceeEEeeeecccchHHHHHHhhcCC
Q 008085 108 IQTGQSYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSLQTG 186 (578)
Q Consensus 108 i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g 186 (578)
|+||++++|+|++ .++||||||||...|+ +||+|+|||+++.++..++ .+|+|++|+++||+++...+.........
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999998 7899999999998887 8999999999886544444 35899999999999987765443322211
Q ss_pred -CCCCCCceEEEcCCCCCCCCCCC------------------C-cceeEEEecCcEEEEEEEecCCCCeEEEEEcCceEE
Q 008085 187 -AGPNVSDAYTINGLPGPLYNCSA------------------K-DTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVT 246 (578)
Q Consensus 187 -~~~~~~~~~liNG~~~~~~~~~~------------------~-~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~ 246 (578)
.....++.++|||+.. +.|.. . ....++|++|++|||||||+|+.+.+.|+|++|+|+
T Consensus 159 ~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~ 236 (541)
T TIGR03388 159 MRWIGEPQSLLINGRGQ--FNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLT 236 (541)
T ss_pred CcCCCCCcceEECCCCC--CCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEE
Confidence 1113568999999954 23321 1 224589999999999999999999999999999999
Q ss_pred EEEeCCCCCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEeccccCCCCCCCCcceEEEEEEecCCCCCCCcccccC
Q 008085 247 VVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIK 326 (578)
Q Consensus 247 via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~p~~~~~~~~ 326 (578)
|||+||.+++|+.++.|.|++||||||+|++++.+ +++||||+.....+ .......|+|+|.+... ..
T Consensus 237 VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~-~~~y~ira~~~~~~---~~~~~~~aiL~Y~~~~~-------~~- 304 (541)
T TIGR03388 237 VVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDP-SRNYWISVGVRGRK---PNTPPGLTVLNYYPNSP-------SR- 304 (541)
T ss_pred EEEeCCEecccceeCeEEecCCCEEEEEEeCCCCC-CCcEEEEEecccCC---CCCccEEEEEEECCCCC-------CC-
Confidence 99999999999999999999999999999998764 26899998754331 12346789999987542 10
Q ss_pred CCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCcCcceEEEEEeccCCCCCCCCCCccCCCCCCceeeeecceee
Q 008085 327 KLPLMKPTLPALNDTAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVNNFSF 406 (578)
Q Consensus 327 ~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ing~~~ 406 (578)
.++...+..|.+.+......+ .+..+.... ....|..+++++++....... .....|++|+.+|
T Consensus 305 ~p~~~~~~~p~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~n~~s~ 368 (541)
T TIGR03388 305 LPPTPPPVTPAWDDFDRSKAF--SLAIKAAMG-SPKPPETSDRRIVLLNTQNKI-------------NGYTKWAINNVSL 368 (541)
T ss_pred CCCCCCCCCCCccccchhhcc--chhhhcccc-CCCCCCCCCcEEEEeccCccc-------------CceEEEEECcccC
Confidence 000000222333332111111 111111111 112234556666543321100 2245699999999
Q ss_pred eCCChhhhhhhhcCCCCccccCCC-CCCceeccCCCCCCCCCcccCCceEEEecCCCEEEEEEecCCCC---CCCCCCee
Q 008085 407 ILPSTALLQAHFFGQNGVYTTDFP-STPLIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTSTL---GAESHPLH 482 (578)
Q Consensus 407 ~~p~~~ll~~~~~~~~g~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~---~~~~HP~H 482 (578)
..|..|+|.+.+.+..+.+..+.+ ...+..|+..... .+...+.++.++.++.|++||++|+|.... ....||||
T Consensus 369 ~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~H 447 (541)
T TIGR03388 369 TLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPP-PNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWH 447 (541)
T ss_pred CCCCccHHHHHhhcCCccccCCCCcccccccccccCCC-cccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEE
Confidence 988888877766544443332211 0111112111100 111234567889999999999999996421 24689999
Q ss_pred ecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEecCceeEEEEeechhhhhccceEEEEEecCC
Q 008085 483 LHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVLNGN 562 (578)
Q Consensus 483 lHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~ 562 (578)
||||+||||++|.|.|+...+...+|+.||++|||+.|++++|++|||++||||.|+|||||+||+..||+++|.+.
T Consensus 448 LHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~--- 524 (541)
T TIGR03388 448 LHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG--- 524 (541)
T ss_pred ecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc---
Confidence 99999999999999998665556799999999999999999999999999999999999999999999999999643
Q ss_pred CCCCCCCCCCCCCCCC
Q 008085 563 LPNQKLPPPPADLPKC 578 (578)
Q Consensus 563 ~~~~~~~~~p~~~~~c 578 (578)
.++++++|+++++|
T Consensus 525 --~~~~~~~P~~~~~C 538 (541)
T TIGR03388 525 --VEKVGKLPKEALGC 538 (541)
T ss_pred --ccccCCCCccccCC
Confidence 25677799999999
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=2.7e-93 Score=768.39 Aligned_cols=492 Identities=28% Similarity=0.481 Sum_probs=373.0
Q ss_pred EEEEEEEEEEEeecCceeeEEEEEcCCCCCceEEEecCCEEEEEEEecCC-CCeeEEeecccccCCcCCCCCCCcccccc
Q 008085 30 RHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVP-NNISIHWHGIRQLLSGWADGPAYITQCPI 108 (578)
Q Consensus 30 ~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DG~~~~tq~~i 108 (578)
..|+|+|++..++++|+.+.+++|||++|||+|++++||+|+|+|+|+|+ ++|+|||||+++..++|+||+|++|||+|
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI 88 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPI 88 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCC
Confidence 46899999999999999999999999999999999999999999999996 89999999999999999999999999999
Q ss_pred CCCCeEEEEEEEC-CCCcceEEecCccccccceeeeEEEeCCCCCCCCCCCCCCceeEEeeeecccchHHHHHHhhcCCC
Q 008085 109 QTGQSYVYNFTIS-GQRGTLFWHAHISWLRATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSLQTGA 187 (578)
Q Consensus 109 ~PG~~~~Y~~~~~-~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~ 187 (578)
+||++|+|+|+++ +++||||||||.+.|+.||+|+|||++++..++ .+|+|++|+++||++....++.........
T Consensus 89 ~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~l~G~lIV~~~~~~~~---~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 165 (538)
T TIGR03390 89 PPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTAFGPLIVEDCEPPPY---KYDDERILLVSDFFSATDEEIEQGLLSTPF 165 (538)
T ss_pred CCCCcEEEEEEecCCCCeeeEEecCCchhhhcceeEEEEccCCccCC---CccCcEEEEEeCCCCCCHHHHHhhhhccCC
Confidence 9999999999984 589999999999999888999999998764433 348899999999999988776544332221
Q ss_pred -CCCCCceEEEcCCCCCCCC---CC---CCcceeEEEecCcEEEEEEEecCCCCeEEEEEcCce-EEEEEeCCCCCCceE
Q 008085 188 -GPNVSDAYTINGLPGPLYN---CS---AKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHS-VTVVDVDAIYIKSFQ 259 (578)
Q Consensus 188 -~~~~~~~~liNG~~~~~~~---~~---~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~-~~via~DG~~~~P~~ 259 (578)
....++.++|||+...... .+ .+..+.++|++|++|||||||+|....+.|+|++|+ |+|||+||.+++|+.
T Consensus 166 ~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~ 245 (538)
T TIGR03390 166 TWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAK 245 (538)
T ss_pred ccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceE
Confidence 1235689999999653320 00 123578999999999999999999999999999999 999999999999999
Q ss_pred EeEEEECCCceEEEEEEeCCCCC-----CcceEEEeccccCCCCCCCCcceEEEEEEecCCCCCCCcccccCCCCCCCCC
Q 008085 260 TDILLITPGQTTNILLKAKPSYP-----NATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPT 334 (578)
Q Consensus 260 ~~~l~l~pGeR~dvlv~~~~~~~-----~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~p~~~~~~~~~~~~~~p~ 334 (578)
+++|.|++||||||+|++++++. .++||||+.....+ +.....|+|+|.++.. +. .+.. |.
T Consensus 246 v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~----~~~~~~aiL~Y~~~~~-------~~--~~~~-p~ 311 (538)
T TIGR03390 246 IDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRP----KVYRGYAVLRYRSDKA-------SK--LPSV-PE 311 (538)
T ss_pred eCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCC----CcceEEEEEEeCCCCC-------CC--CCCC-CC
Confidence 99999999999999999998621 28999998753321 2345789999986542 10 1101 11
Q ss_pred CCCCCCc-ccccccccccccccCCCCC-CCCCcCcceEEEEEeccCCCCCCCCCCccCCCCCCceeeeecceeeeC--CC
Q 008085 335 LPALNDT-AFAFNYTTRLRSLANAQFP-ANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVNNFSFIL--PS 410 (578)
Q Consensus 335 ~p~~~~~-~~~~~~~~~l~~l~~~~~p-~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ing~~~~~--p~ 410 (578)
.+..... .+.......+.++.....+ ...+..+++.+.+.+.+.... . .+.+.|++||.+|.. |.
T Consensus 312 ~~~~~~~~~~~~~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~----------~-~g~~~~~~N~~s~~~~~~~ 380 (538)
T TIGR03390 312 TPPLPLPNSTYDWLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDP----------L-NGRVAWLQNGLSWTESVRQ 380 (538)
T ss_pred CCCCCccCcchhhhheeeEecCccccCCCCCCCcCceEEEEEccccccc----------c-CCeEEEEECCcccCCCCCC
Confidence 1111000 0000111233444321111 111345677777666543210 0 235679999999975 67
Q ss_pred hhhhhhhhcCCCCccccCCCCCCceeccCCCCCCCCCcccCCceEEEecCCCEEEEEEecCCCC-----CCCCCCeeecC
Q 008085 411 TALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTSTL-----GAESHPLHLHG 485 (578)
Q Consensus 411 ~~ll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~-----~~~~HP~HlHG 485 (578)
.|+|...+.+. . +..++ ++ ... ........+.++.++.|++|||+|+|.... ....|||||||
T Consensus 381 ~P~L~~~~~~~---~----~~~~~--~~--~~~-~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHG 448 (538)
T TIGR03390 381 TPYLVDIYENG---L----PATPN--YT--AAL-ANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHG 448 (538)
T ss_pred CchHHHHhcCC---C----CcCCC--cc--ccc-ccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecC
Confidence 77776544321 0 00000 10 000 000112346678899999999999996421 24789999999
Q ss_pred CceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeec----------CCcEEEEEEEecCceeEEEEeechhhhhccceEE
Q 008085 486 FNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVP----------SGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMA 555 (578)
Q Consensus 486 ~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~----------~~~~~~irf~adnpG~w~~HCHil~H~d~GMm~~ 555 (578)
|+||||++|.|.|++......+++.||++|||+.|+ +++|++|||++||||.|+|||||+||+..||+++
T Consensus 449 h~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~ 528 (538)
T TIGR03390 449 RHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTV 528 (538)
T ss_pred CcEEEEcccccccCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEE
Confidence 999999999999987654456888999999999996 8899999999999999999999999999999999
Q ss_pred EEEecC
Q 008085 556 WIVLNG 561 (578)
Q Consensus 556 ~~V~~~ 561 (578)
|.|.+.
T Consensus 529 ~~~~~~ 534 (538)
T TIGR03390 529 WVFGDA 534 (538)
T ss_pred EEeCCh
Confidence 998653
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=1.6e-78 Score=652.06 Aligned_cols=422 Identities=26% Similarity=0.465 Sum_probs=316.8
Q ss_pred EEEEEEEEEEEeecCceeeEEEEEcCCCCCceEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCCCCCCccccccC
Q 008085 30 RHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQ 109 (578)
Q Consensus 30 ~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~tq~~i~ 109 (578)
++|+|++++..++++|+.+.+|+|||++|||+|++++||+|+|+|+|+|+++|+|||||++++.. +||+|+++||+|+
T Consensus 46 ~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~--~DGvP~vt~~~I~ 123 (587)
T TIGR01480 46 TEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPFQ--MDGVPGVSFAGIA 123 (587)
T ss_pred ceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCcc--ccCCCcccccccC
Confidence 79999999999999999999999999999999999999999999999999999999999998765 9999999999999
Q ss_pred CCCeEEEEEEECCCCcceEEecCccccc-cceeeeEEEeCCCCCCCCCCCCCCceeEEeeeecccchHHHHHHhhc----
Q 008085 110 TGQSYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSLQ---- 184 (578)
Q Consensus 110 PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~---- 184 (578)
||++|+|+|++ .++||||||||...|. .||+|+|||++++..++ .+|+|++|+|+||++.+..+++..+..
T Consensus 124 PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~---~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~ 199 (587)
T TIGR01480 124 PGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPV---RADREHVVLLSDWTDLDPAALFRKLKVMAGH 199 (587)
T ss_pred CCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccC---CCCceEEEEeeecccCCHHHHHHhhhccccc
Confidence 99999999998 7899999999998877 89999999998755444 348999999999998766655433210
Q ss_pred -----------------CCCC---------------C-------CCCceEEEcCCCCCCCCCCCCcceeEEEecCcEEEE
Q 008085 185 -----------------TGAG---------------P-------NVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLL 225 (578)
Q Consensus 185 -----------------~g~~---------------~-------~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rl 225 (578)
.|.. + .....+|+||+.. ...+++.+++|++|||
T Consensus 200 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~-------~~~~~~~v~~G~rvRL 272 (587)
T TIGR01480 200 DNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTP-------AGNWTGLFRPGEKVRL 272 (587)
T ss_pred ccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccC-------CCCceEEECCCCEEEE
Confidence 1100 0 0012478898853 1346799999999999
Q ss_pred EEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEeccccCCCCCCCCcce
Q 008085 226 RLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTV 305 (578)
Q Consensus 226 RliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~ 305 (578)
||||+|+.+.+.|+|+||+|+||++||++++|+.++.+.|+|||||||+|+.++. |.|+|.+..... ...+
T Consensus 273 R~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~~---g~~~i~a~~~~~------~~~~ 343 (587)
T TIGR01480 273 RFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTGD---DAFTIFAQDSDR------TGYA 343 (587)
T ss_pred EEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCCC---ceEEEEEEecCC------CceE
Confidence 9999999999999999999999999999999999999999999999999998754 899999875321 2356
Q ss_pred EEEEEEecCCCCCCCcccccCCCCCCCCC-CCCCCCccc--------c--ccc------------------c--------
Q 008085 306 AGILEYEAPAKFPRSSTVSIKKLPLMKPT-LPALNDTAF--------A--FNY------------------T-------- 348 (578)
Q Consensus 306 ~ail~y~~~~~~p~~~~~~~~~~~~~~p~-~p~~~~~~~--------~--~~~------------------~-------- 348 (578)
.++|++.+... . +.+.+++. .....+... . ... .
T Consensus 344 ~~~l~~~~~~~-------~--~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (587)
T TIGR01480 344 RGTLAVRLGLT-------A--PVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDA 414 (587)
T ss_pred EEEEecCCCCC-------C--CCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccc
Confidence 77888764321 0 01111110 000000000 0 000 0
Q ss_pred ---------------------------------------cccccccCCCCCCCCCcCcceEEEEEeccCCCCCCCCCCcc
Q 008085 349 ---------------------------------------TRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQ 389 (578)
Q Consensus 349 ---------------------------------------~~l~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~ 389 (578)
.....|... .+...+...++.+.+.+...
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~-~~~~~~~~p~r~~~~~L~g~----------- 482 (587)
T TIGR01480 415 SPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSL-FPPPDGRAPGREIELHLTGN----------- 482 (587)
T ss_pred cccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhcccc-ccccCcCCCCceEEEEEcCC-----------
Confidence 000000000 00000112233333322111
Q ss_pred CCCCCCceeeeecceeeeCCChhhhhhhhcCCCCccccCCCCCCceeccCCCCCCCCCcccCCceEEEecCCCEEEEEEe
Q 008085 390 GPNNSTKFAASVNNFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQ 469 (578)
Q Consensus 390 ~~~~~~~~~~~ing~~~~~p~~~ll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~ 469 (578)
..++.|+|||+.|. ....+.++.|++|+|.+.
T Consensus 483 ----m~~~~wtiNG~~~~--------------------------------------------~~~pl~v~~Gervri~l~ 514 (587)
T TIGR01480 483 ----MERFAWSFDGEAFG--------------------------------------------LKTPLRFNYGERLRVVLV 514 (587)
T ss_pred ----CceeEEEECCccCC--------------------------------------------CCCceEecCCCEEEEEEE
Confidence 23456888876541 012356899999999999
Q ss_pred cCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEecCceeEEEEeechhhhh
Q 008085 470 DTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPGVWFMHCHFEVHIS 549 (578)
Q Consensus 470 N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~adnpG~w~~HCHil~H~d 549 (578)
|.+. +.||||+||+.|+|+..+ |. .+.+|||+.|+||+++.++|++||||.|+||||++.|++
T Consensus 515 N~t~---~~HpmHlHG~~f~v~~~~-G~-------------~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~ 577 (587)
T TIGR01480 515 NDTM---MAHPIHLHGMWSELEDGQ-GE-------------FQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHME 577 (587)
T ss_pred CCCC---CCcceeEcCceeeeecCC-Cc-------------ccccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHh
Confidence 9764 899999999999998643 21 235789999999999999999999999999999999999
Q ss_pred ccceEEEEEe
Q 008085 550 WGLKMAWIVL 559 (578)
Q Consensus 550 ~GMm~~~~V~ 559 (578)
.|||..|+|.
T Consensus 578 ~GM~~~~~v~ 587 (587)
T TIGR01480 578 AGMFREVTVR 587 (587)
T ss_pred CcCcEEEEeC
Confidence 9999999873
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=1.8e-76 Score=632.26 Aligned_cols=429 Identities=19% Similarity=0.252 Sum_probs=299.9
Q ss_pred eEEEEEEEEEEEeecCc-eeeEEEEEcCCCCCceEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCCCCCCccccc
Q 008085 29 TRHYKFDIKMQNVTRLC-HTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCP 107 (578)
Q Consensus 29 ~~~~~l~~~~~~~~~~g-~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~tq~~ 107 (578)
...|+|++++...++++ ....+|+|||++|||+|++++||+|+|+|+|+|+++|+|||||+++++. +||+| ||+
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~~--~DG~p---q~~ 119 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPGE--VDGGP---QGI 119 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCCc--cCCCC---CCC
Confidence 45799999999999986 4456999999999999999999999999999999999999999999877 99987 899
Q ss_pred cCCCCeEEEEEEECCCCcceEEecCccc----cc-cceeeeEEEeCCCCCCCCCCC--CCCceeEEeeeecccchHHHHH
Q 008085 108 IQTGQSYVYNFTISGQRGTLFWHAHISW----LR-ATVYGPLVIFPKRGVPYPFPK--PYKEVPIIFGEWFNADTEAIIN 180 (578)
Q Consensus 108 i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~ 180 (578)
|+||++++|+|++++++||||||||.++ |. +||+|+|||+++++...+++. ..+|++|+++||+.+...++..
T Consensus 120 I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~ 199 (523)
T PRK10965 120 IAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDY 199 (523)
T ss_pred CCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceec
Confidence 9999999999998667999999999864 33 799999999998765444433 3469999999998765443321
Q ss_pred Hhh-cCCCCCCCCceEEEcCCCCCCCCCCCCcceeEEEecCcEEEEEEEecCCCCeEEEEE-cCceEEEEEeCCCCC-Cc
Q 008085 181 QSL-QTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSI-ANHSVTVVDVDAIYI-KS 257 (578)
Q Consensus 181 ~~~-~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i-~gh~~~via~DG~~~-~P 257 (578)
... .....+..++.++|||+.+ |.+.++ +++|||||||+|+.+.+.|++ ++|+|+|||+||+++ +|
T Consensus 200 ~~~~~~~~~g~~gd~~lVNG~~~----------p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P 268 (523)
T PRK10965 200 QLDVMTAAVGWFGDTLLTNGAIY----------PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEP 268 (523)
T ss_pred cccccccccCccCCeEEECCccc----------ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCc
Confidence 111 0111234678999999975 667775 579999999999999999998 799999999999987 89
Q ss_pred eEEeEEEECCCceEEEEEEeCCCCCCcceEEEeccccCCC-CCCCCcceEEEEEEecCCCCCCCcccccCCCCCCCCCCC
Q 008085 258 FQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQ-GTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLP 336 (578)
Q Consensus 258 ~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~~~~~~-~~~~~~~~~ail~y~~~~~~p~~~~~~~~~~~~~~p~~p 336 (578)
+.+++|.|+|||||||+|++++. +.|.+.+....... ..........++++..... . .... .|
T Consensus 269 ~~v~~l~lapGeR~dvlv~~~~~---~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~--~~~~----~P 332 (523)
T PRK10965 269 VKVSELPILMGERFEVLVDTSDG---KAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLI-------S--ASGT----LP 332 (523)
T ss_pred cEeCeEEECccceEEEEEEcCCC---ceEEEEEecccCcccccccCCCceeEEEEeccCc-------C--CCCc----CC
Confidence 99999999999999999999875 88999876432211 0000112345555543221 0 0000 11
Q ss_pred CCCCcccccccccccccccCCCCCCCCCcCcceEEEEEeccCCC-----CC-CCCC--Cc-------------cC----C
Q 008085 337 ALNDTAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTN-----PC-PKNQ--TC-------------QG----P 391 (578)
Q Consensus 337 ~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~d~~~~~~~~~~~~-----~~-~~~~--~~-------------~~----~ 391 (578)
. .+..+... +. ......+++.+.+..... .. ..+. .. .+ .
T Consensus 333 ~------------~l~~~~~~--~~-~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (523)
T PRK10965 333 D------------SLASLPAL--PS-LEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHM 397 (523)
T ss_pred h------------hhccCCCC--Cc-ccccceeEEEEeeccccchhhhhhcccccccccccccccccccccccccccccc
Confidence 0 01111000 00 000012223222210000 00 0000 00 00 0
Q ss_pred CCC----Cc---e--eeeecceeeeCCChhhhhhhhcCCCCccccCCCCCCceeccCCCCCCCCCcccCCceEEEecCCC
Q 008085 392 NNS----TK---F--AASVNNFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVVLPFNA 462 (578)
Q Consensus 392 ~~~----~~---~--~~~ing~~~~~p~~~ll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 462 (578)
..+ .+ + .|+|||+.|... ...+.++.|+
T Consensus 398 ~~~~~~~~~~~~~~~~~~ING~~~~~~-------------------------------------------~~~~~~~~G~ 434 (523)
T PRK10965 398 NHGAADAGPAFDFHHANKINGKAFDMN-------------------------------------------KPMFAAKKGQ 434 (523)
T ss_pred ccccccccccccccccccCCCeECCCC-------------------------------------------CcceecCCCC
Confidence 000 00 0 135666655211 2235688999
Q ss_pred EEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEe----cCceeE
Q 008085 463 SVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRA----DNPGVW 538 (578)
Q Consensus 463 ~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~a----dnpG~w 538 (578)
+++|.|.|.+. .+.|||||||++||||+++.. ......+.|||||.|++ +.+.|++++ +++|.|
T Consensus 435 ~e~w~i~N~~~--~~~Hp~HlHg~~F~Vl~~~g~---------~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~ 502 (523)
T PRK10965 435 YERWVISGVGD--MMLHPFHIHGTQFRILSENGK---------PPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAY 502 (523)
T ss_pred EEEEEEEeCCC--CCccCeEEeCcEEEEEEecCC---------CCCccccccccEEEECC-cEEEEEEEecCCCCCCCCE
Confidence 99999999752 368999999999999998632 22234568999999987 566555554 567899
Q ss_pred EEEeechhhhhccceEEEEEe
Q 008085 539 FMHCHFEVHISWGLKMAWIVL 559 (578)
Q Consensus 539 ~~HCHil~H~d~GMm~~~~V~ 559 (578)
|||||||+|||.|||..|+|.
T Consensus 503 ~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 503 MAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred EEEeCchhhhccCccceeEeC
Confidence 999999999999999999883
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=6.2e-75 Score=615.43 Aligned_cols=402 Identities=18% Similarity=0.222 Sum_probs=294.6
Q ss_pred EEEEEEEEEEeecCc-eeeEEEEEcCCCCCceEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCCCCCCccccccC
Q 008085 31 HYKFDIKMQNVTRLC-HTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQ 109 (578)
Q Consensus 31 ~~~l~~~~~~~~~~g-~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~tq~~i~ 109 (578)
.|+|+++....++++ ..+.+|+|||++|||+|++++||+|+|+|+|+|+++|+|||||++++.. .+||++ ++|+
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~----~~I~ 121 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA----RMMS 121 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc----ccCC
Confidence 389999999999884 6789999999999999999999999999999999999999999999876 577765 7899
Q ss_pred CCCeEEEEEEECCCCcceEEecCccccc-----cceeeeEEEeCCCCCCCCCCC--CCCceeEEeeeecccchHHHHHHh
Q 008085 110 TGQSYVYNFTISGQRGTLFWHAHISWLR-----ATVYGPLVIFPKRGVPYPFPK--PYKEVPIIFGEWFNADTEAIINQS 182 (578)
Q Consensus 110 PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-----~Gl~G~liV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~~~ 182 (578)
||++|+|+|++.+++||||||||.++.+ +||+|+|||+++.+.+.+++. ...|++|+++||..+........
T Consensus 122 PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~- 200 (471)
T PRK10883 122 PNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYN- 200 (471)
T ss_pred CCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccc-
Confidence 9999999999867799999999988743 799999999998765444443 24599999999987654332110
Q ss_pred hcCCCCCCCCceEEEcCCCCCCCCCCCCcceeEEEecCcEEEEEEEecCCCCeEEEEE-cCceEEEEEeCCCCC-CceEE
Q 008085 183 LQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSI-ANHSVTVVDVDAIYI-KSFQT 260 (578)
Q Consensus 183 ~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i-~gh~~~via~DG~~~-~P~~~ 260 (578)
........++.++|||+.+ |.++|++| +|||||||+|+.+.+.|+| ++|+|+|||+||+++ +|+.+
T Consensus 201 -~~~~~g~~gd~~lvNG~~~----------p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~ 268 (471)
T PRK10883 201 -EPGSGGFVGDTLLVNGVQS----------PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSV 268 (471)
T ss_pred -ccccCCccCCeeEECCccC----------CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEe
Confidence 1111234678999999965 67999875 7999999999999999999 899999999998776 89999
Q ss_pred eEEEECCCceEEEEEEeCCCCCCcceEEEeccccCCC----CCCCCc---ceEEEEEEecCCCCCCCcccccCCCCCCCC
Q 008085 261 DILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQ----GTFDNS---TVAGILEYEAPAKFPRSSTVSIKKLPLMKP 333 (578)
Q Consensus 261 ~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~~~~~~----~~~~~~---~~~ail~y~~~~~~p~~~~~~~~~~~~~~p 333 (578)
++|.|+|||||||+|++++. +.+.|++....... ..+... ....+++...... .+....
T Consensus 269 ~~l~l~pGeR~dvlVd~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 334 (471)
T PRK10883 269 KQLSLAPGERREILVDMSNG---DEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGL-----------LPLVTD 334 (471)
T ss_pred CeEEECCCCeEEEEEECCCC---ceEEEECCCccccccccccccCCccccccceeEEEEcccc-----------ccCCCC
Confidence 99999999999999999764 67777763211000 000000 0112222221110 000000
Q ss_pred CCCCCCCcccccccccccccccCCCCCCCCCcCcceEEEEEeccCCCCCCCCCCccCCCCCCceeeeecceeeeCCChhh
Q 008085 334 TLPALNDTAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVNNFSFILPSTAL 413 (578)
Q Consensus 334 ~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ing~~~~~p~~~l 413 (578)
..| ..+.. .. ..+....++..+.++ +. .|.|||+.|.+.
T Consensus 335 ~~p------------~~l~~---~~---~~~~~~~~~~~~~l~-----------------~~--~~~INg~~~~~~---- 373 (471)
T PRK10883 335 NLP------------MRLLP---DE---IMEGSPIRSREISLG-----------------DD--LPGINGALWDMN---- 373 (471)
T ss_pred cCC------------hhhcC---CC---CCCCCCcceEEEEec-----------------CC--cCccCCcccCCC----
Confidence 000 01111 00 011122333333331 11 257899877322
Q ss_pred hhhhhcCCCCccccCCCCCCceeccCCCCCCCCCcccCCceEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEe
Q 008085 414 LQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQ 493 (578)
Q Consensus 414 l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~ 493 (578)
.....++.|++++|.+.|. +.|||||||+.|||+++
T Consensus 374 ---------------------------------------~~~~~~~~g~~e~W~~~n~-----~~HP~HlHg~~FqVl~~ 409 (471)
T PRK10883 374 ---------------------------------------RIDVTAQQGTWERWTVRAD-----MPQAFHIEGVMFLIRNV 409 (471)
T ss_pred ---------------------------------------cceeecCCCCEEEEEEECC-----CCcCEeECCccEEEEEe
Confidence 1124578999999999883 58999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEecCce----eEEEEeechhhhhccceEEEEEec
Q 008085 494 GFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPG----VWFMHCHFEVHISWGLKMAWIVLN 560 (578)
Q Consensus 494 g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~adnpG----~w~~HCHil~H~d~GMm~~~~V~~ 560 (578)
+... ....+..|||||.|+ +.+.|+++++++| .||||||||+|||.|||.+|+|.+
T Consensus 410 ~G~~---------~~~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 410 NGAM---------PFPEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred cCCC---------CCccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 6321 112334799999995 4699999999887 899999999999999999999965
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.6e-60 Score=508.30 Aligned_cols=402 Identities=24% Similarity=0.364 Sum_probs=289.6
Q ss_pred ecCceeeEEEEEcCCCCCceEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCCCCCCccccccCCCCeEEEEEEEC
Q 008085 42 TRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTIS 121 (578)
Q Consensus 42 ~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~tq~~i~PG~~~~Y~~~~~ 121 (578)
...+.....++|||++|||+|++++||+|+|+++|.|.+.|++||||+.++.. +||++..+|+++.||++++|.|+.
T Consensus 46 ~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p~~--~dG~~~~~~~~~~~~~~~~y~f~~- 122 (451)
T COG2132 46 FAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVPGE--MDGVPPLTQIPPGPGETPTYTFTQ- 122 (451)
T ss_pred eecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccCcc--ccCCCcccccCCCCCCcEEEeecC-
Confidence 34567888999999999999999999999999999998889999999988855 999999999999999999999997
Q ss_pred CCCcceEEecCccccc-cceeeeEEEeCCCCCCCCCCCCCCceeEEeeeecccchHHHHHHhhcCCCCCCCCceEEEcCC
Q 008085 122 GQRGTLFWHAHISWLR-ATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGL 200 (578)
Q Consensus 122 ~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~ 200 (578)
+.+||||||+|.++|. +||+|++||++..+.+. ..|++..+++.+|+.......... ........++..+|||+
T Consensus 123 ~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~vnG~ 197 (451)
T COG2132 123 DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE--GPAMGGFPGDTLLVNGA 197 (451)
T ss_pred CCCcceEeccCCCchhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC--CccccCCCCCeEEECCC
Confidence 6677999999999987 89999999999976555 347777777888876655544333 12223345689999997
Q ss_pred CCCCCCCCCCcceeEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCC
Q 008085 201 PGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPS 280 (578)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~ 280 (578)
.+ +.+.++. ++||||++|+++.+.+.+++.+++|+||++||.+++|..++.+.|+|||||||++++++.
T Consensus 198 ~~----------p~~~~~~-g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~~~ 266 (451)
T COG2132 198 IL----------PFKAVPG-GVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMNDG 266 (451)
T ss_pred cc----------ceeecCC-CeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcCCC
Confidence 54 4455554 569999999998888899999999999999999998899999999999999999999984
Q ss_pred CCCcceEEEeccccCCCCCCCCcceEEEEEEecCCCCCCCcccccCCCCCCCCC--CCCCCCcccccccccccccccCCC
Q 008085 281 YPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPT--LPALNDTAFAFNYTTRLRSLANAQ 358 (578)
Q Consensus 281 ~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~p~~~~~~~~~~~~~~p~--~p~~~~~~~~~~~~~~l~~l~~~~ 358 (578)
+.+.+.+.. .... + ...+......... + +.+..++. .+.. +. ........+......
T Consensus 267 ---~~~~l~~~~-~~~~---~--~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~-d~-~~~~~~~~~~~~~~~- 325 (451)
T COG2132 267 ---GAVTLTALG-EDMP---D--TLKGFRAPNPILT-P--------SYPVLNGRVGAPTG-DM-ADHAPVGLLVTILVE- 325 (451)
T ss_pred ---CeEEEEecc-ccCC---c--eeeeeeccccccc-c--------ccccccccccCCCc-ch-hhccccccchhhcCC-
Confidence 899999875 1110 1 1111111110000 0 00000000 0000 00 000000000000000
Q ss_pred CCCCCCcCcceEEEEEeccCCCCCCCCCCccCCCCCCceeeeecceeeeCCChhhhhhhhcCCCCccccCCCCCCceecc
Q 008085 359 FPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVNNFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFN 438 (578)
Q Consensus 359 ~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ing~~~~~p~~~ll~~~~~~~~g~~~~~~~~~~p~~~~ 438 (578)
.-+ ..+..+.+... -..+.|.+|++.|..
T Consensus 326 ---~~~-~~~~~~~l~~~-----------------~~~~~~~~n~~~~~~------------------------------ 354 (451)
T COG2132 326 ---PGP-NRDTDFHLIGG-----------------IGGYVWAINGKAFDD------------------------------ 354 (451)
T ss_pred ---Ccc-cccccchhhcc-----------------cccccccccCccCCC------------------------------
Confidence 000 00011111000 112345666654411
Q ss_pred CCCCCCCCCcccCCceEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceee
Q 008085 439 YTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTV 518 (578)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv 518 (578)
....+.++.|++++|+|.|.+ .+.|||||||+.|+|++.+ .......+.||||+
T Consensus 355 -------------~~~~~~~~~G~~~~~~i~n~~---~~~HP~HlHg~~F~v~~~~----------~~~~~~~~~~kDTv 408 (451)
T COG2132 355 -------------NRVTLIAKAGTRERWVLTNDT---PMPHPFHLHGHFFQVLSGD----------APAPGAAPGWKDTV 408 (451)
T ss_pred -------------CcCceeecCCCEEEEEEECCC---CCccCeEEcCceEEEEecC----------CCcccccCccceEE
Confidence 133567889999999999975 3899999999999999986 12223456899999
Q ss_pred eecCCcEEEEEEEecCceeEEEEeechhhhhccceEEEEEec
Q 008085 519 GVPSGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVLN 560 (578)
Q Consensus 519 ~v~~~~~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~ 560 (578)
.+.+++.++|+|++++||.|+|||||++|++.|||..+.|..
T Consensus 409 ~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~~ 450 (451)
T COG2132 409 LVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVVP 450 (451)
T ss_pred EeCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEecC
Confidence 999999999999999999999999999999999999998853
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=3.6e-48 Score=390.06 Aligned_cols=267 Identities=16% Similarity=0.197 Sum_probs=218.8
Q ss_pred ccccCceEEEEEEEEEEEeec-CceeeEEEEEcCCCCCceEEEecCCEEEEEEEecCC--CCeeEEeecccccCCcCCCC
Q 008085 23 LAVASITRHYKFDIKMQNVTR-LCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVP--NNISIHWHGIRQLLSGWADG 99 (578)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~-~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~--~~~siH~HG~~~~~~~~~DG 99 (578)
..+.+.+++|+|++++.++++ +|..+.+|+|||++|||+|++++||+|+|+|+|+++ .++++||||.. ++||
T Consensus 21 ~~~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg 95 (311)
T TIGR02376 21 DRSGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALG 95 (311)
T ss_pred ccCCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCC
Confidence 345678899999999999995 699999999999999999999999999999999985 58999999963 3899
Q ss_pred CCCccccccCCCCeEEEEEEECCCCcceEEecCccc----cc-cceeeeEEEeCCCCCCCCCCCCCCceeEEeeeecccc
Q 008085 100 PAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISW----LR-ATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNAD 174 (578)
Q Consensus 100 ~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~ 174 (578)
++.++| |.||++++|+|++ +++||||||||.++ +. .||+|+|||++++..+ ..|+|++|+++||+.+.
T Consensus 96 ~~~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~----~~d~e~~l~l~d~~~~~ 168 (311)
T TIGR02376 96 GAALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLP----EYDKEYYIGESDLYTPK 168 (311)
T ss_pred CCccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCc----CcceeEEEeeeeEeccc
Confidence 888777 9999999999997 78999999999764 33 7999999999875422 45889999999998865
Q ss_pred hHHHHHHhhcC--CCCCCCCceEEEcCCCCCCCCCCCCcceeEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCC
Q 008085 175 TEAIINQSLQT--GAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDA 252 (578)
Q Consensus 175 ~~~~~~~~~~~--g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG 252 (578)
........... ......++.++|||+.+++ .+.+++++|+++||||+|++..+.+.|+++++.+++|+.||
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~-------~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG 241 (311)
T TIGR02376 169 DEGEGGAYEDDVAAMRTLTPTHVVFNGAVGAL-------TGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTG 241 (311)
T ss_pred cccccccccchHHHHhcCCCCEEEECCccCCC-------CCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECC
Confidence 43211100000 0012356899999996532 24578999999999999999989899999999999999999
Q ss_pred CCCCce--EEeEEEECCCceEEEEEEeCCCCCCcceEEEeccccCCCCCCCCcceEEEEEEecCC
Q 008085 253 IYIKSF--QTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPA 315 (578)
Q Consensus 253 ~~~~P~--~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~ 315 (578)
.++.|. .++++.|+||||+||+|+++++ |.|+++++.+.... .....+++.|++..
T Consensus 242 ~~~~~~~~~~~~~~i~PG~R~dv~v~~~~p---G~y~~~~~~~~~~~----~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 242 KFANPPNRDVETWFIPGGSAAAALYTFEQP---GVYAYVDHNLIEAF----EKGAAAQVKVEGAW 299 (311)
T ss_pred cccCCCCCCcceEEECCCceEEEEEEeCCC---eEEEEECcHHHHHH----hCCCEEEEEECCCC
Confidence 999654 4899999999999999999986 99999998754321 23578999998765
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=1.2e-36 Score=261.46 Aligned_cols=116 Identities=41% Similarity=0.766 Sum_probs=108.8
Q ss_pred EEEEEEeecCceeeEEEEEcCCCCCceEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCCCCCCccccccCCCCeE
Q 008085 35 DIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSY 114 (578)
Q Consensus 35 ~~~~~~~~~~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~tq~~i~PG~~~ 114 (578)
+|++..+.++|..+.+|+|||++|||+|++++||+|+|+|+|.|+++++|||||++++..+|+||+++++||+|.||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 47889999998779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCCcceEEecCccccc-cceeeeEEEeCCC
Q 008085 115 VYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKR 150 (578)
Q Consensus 115 ~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~ 150 (578)
+|+|++++++||||||||.+++. +||+|+|||++++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 99999966699999999999875 9999999999874
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=1.1e-29 Score=227.74 Aligned_cols=108 Identities=43% Similarity=0.816 Sum_probs=96.4
Q ss_pred ccCCceEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEE
Q 008085 449 VMNGTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAI 528 (578)
Q Consensus 449 ~~~~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~i 528 (578)
.+.++.++.++.|++|||+|+|.+. ..|||||||++|+|++++.+.++.. ....+++.+|.||||+.|+++++++|
T Consensus 29 ~~~~~~~~~~~~g~~v~~~l~N~~~---~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i 104 (138)
T PF07731_consen 29 FFGNTPVIEVKNGDVVEIVLQNNGS---MPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVI 104 (138)
T ss_dssp SSSTTSEEEEETTSEEEEEEEECTT---SSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEE
T ss_pred cCCCcceEEEeCCCEEEEEEECCCC---CccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEE
Confidence 4567889999999999999999653 7999999999999999987765444 35677889999999999999999999
Q ss_pred EEEecCceeEEEEeechhhhhccceEEEEEec
Q 008085 529 RFRADNPGVWFMHCHFEVHISWGLKMAWIVLN 560 (578)
Q Consensus 529 rf~adnpG~w~~HCHil~H~d~GMm~~~~V~~ 560 (578)
||++||||.|+|||||++|+|.|||++|.|.+
T Consensus 105 ~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 105 RFRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 99999999999999999999999999999865
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.94 E-value=6.3e-27 Score=214.28 Aligned_cols=149 Identities=30% Similarity=0.584 Sum_probs=121.0
Q ss_pred CceeEEeeeecccchHHHHHHhhcCCC----CCCCCceEEEcCCCCCCCCCC-----CCcceeEEEecCcEEEEEEEecC
Q 008085 161 KEVPIIFGEWFNADTEAIINQSLQTGA----GPNVSDAYTINGLPGPLYNCS-----AKDTFKLKVKPGKTYLLRLINAA 231 (578)
Q Consensus 161 ~e~~l~~~d~~~~~~~~~~~~~~~~g~----~~~~~~~~liNG~~~~~~~~~-----~~~~~~~~v~~G~~~rlRliNa~ 231 (578)
+|++|+++||+++....++......+. .+..++.++|||+.. +.|+ +...+.+++++|++|||||||+|
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~--~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~ 78 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGR--FDCSSADYTGGEPPVIKVKPGERYRLRLINAG 78 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTC--BTTCTTGSTTSTSGEEEEETTTEEEEEEEEES
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccc--cccccccccccccceEEEcCCcEEEEEEEecc
Confidence 488999999999888877665444322 256889999999975 3443 34679999999999999999999
Q ss_pred CCCeEEEEEcCceEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEeccccCCCCCCCCcceEEEEEE
Q 008085 232 LNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEY 311 (578)
Q Consensus 232 ~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y 311 (578)
+...+.|+|+||+|+|||+||.+++|..+++|.|+|||||||+|++++++ |.|+|++................|+|+|
T Consensus 79 ~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~--g~y~i~~~~~~~~~~~~~~~~~~aiL~Y 156 (159)
T PF00394_consen 79 ASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPP--GNYWIRASYQHDSINDPQNGNALAILRY 156 (159)
T ss_dssp SS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCS--SEEEEEEEESSSSSHSHGGGTTEEEEEE
T ss_pred CCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCC--CeEEEEEecccCCCccCCCcEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999955 9999999622121222344678999999
Q ss_pred ec
Q 008085 312 EA 313 (578)
Q Consensus 312 ~~ 313 (578)
.+
T Consensus 157 ~~ 158 (159)
T PF00394_consen 157 DG 158 (159)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.75 E-value=1.3e-17 Score=148.80 Aligned_cols=102 Identities=17% Similarity=0.227 Sum_probs=80.8
Q ss_pred CceeeEEEEEcCCCCCceEEEecCCEEEEEEEecCC---CCeeEEeecccccCCcCCCCCCCccccccCCC---C-e--E
Q 008085 44 LCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVP---NNISIHWHGIRQLLSGWADGPAYITQCPIQTG---Q-S--Y 114 (578)
Q Consensus 44 ~g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~---~~~siH~HG~~~~~~~~~DG~~~~tq~~i~PG---~-~--~ 114 (578)
.+....-+.++| .+||+|++++||+|+|+|+|.++ ....||+||...+..+-+||++.++|+++.|+ + . .
T Consensus 37 ~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~ 115 (148)
T TIGR03095 37 PGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYT 115 (148)
T ss_pred CCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCcccee
Confidence 345666778888 56999999999999999999964 44667777765544445899999999998884 1 1 3
Q ss_pred EEEEEECCCCcceEEecCccccc-cceeeeEEEe
Q 008085 115 VYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIF 147 (578)
Q Consensus 115 ~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~ 147 (578)
++.|+. .++||||||||..+++ +||+|.|||+
T Consensus 116 ~~tf~f-~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 116 DFTYHF-STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEEC-CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 556665 5899999999998887 7999999995
No 22
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.66 E-value=1.3e-14 Score=146.72 Aligned_cols=248 Identities=17% Similarity=0.122 Sum_probs=153.9
Q ss_pred CceEEEcCCCCCCCCCCCCcceeEEEecCcEEEEEEEecCCC-CeEEEEEcCceEEEEEeCCCCCCceEEeEEEECCCce
Q 008085 192 SDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALN-DELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQT 270 (578)
Q Consensus 192 ~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~-~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGeR 270 (578)
.+.+++||+. ..|.|++++|+++++++.|.... ..+.+++|++. +.||... ...|.|||+
T Consensus 47 ~~~~~~nG~~---------pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t 107 (311)
T TIGR02376 47 YQAMTFDGSV---------PGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGET 107 (311)
T ss_pred EEEEEECCcc---------cCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCe
Confidence 3688999984 34899999999999999998632 45688888864 4576431 223899999
Q ss_pred EEEEEEeCCCCCCcceEEEeccccCCCCCCCCcceEEEEEEecCCCCCCCcccccCCCCCCCCCCCCCCCcccccccccc
Q 008085 271 TNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPALNDTAFAFNYTTR 350 (578)
Q Consensus 271 ~dvlv~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~ 350 (578)
+.+-++++++ |+||++||........ ...+..+.|.+..... .+.... ++.--
T Consensus 108 ~ty~F~~~~~---Gty~YH~H~~~~~~~q-~~~Gl~G~liV~~~~~------------------~~~~d~-----e~~l~ 160 (311)
T TIGR02376 108 ATLRFKATRP---GAFVYHCAPPGMVPWH-VVSGMNGAIMVLPREG------------------LPEYDK-----EYYIG 160 (311)
T ss_pred EEEEEEcCCC---EEEEEEcCCCCchhHH-hhcCcceEEEeeccCC------------------CcCcce-----eEEEe
Confidence 9999999876 9999999953210000 0123344444442211 010100 00000
Q ss_pred cccccCCCCCCCCCcCcceEEEEEeccCCCCCCCCCCccCCCCCCceeeeecceeeeCCChhhhhhhhcCCCCccccCCC
Q 008085 351 LRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVNNFSFILPSTALLQAHFFGQNGVYTTDFP 430 (578)
Q Consensus 351 l~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ing~~~~~p~~~ll~~~~~~~~g~~~~~~~ 430 (578)
++.+.... .......+ ...... ..... . -..++||+....
T Consensus 161 l~d~~~~~-----~~~~~~~~--~~~~~~--------~~~~~-~--~~~~iNG~~~~~---------------------- 200 (311)
T TIGR02376 161 ESDLYTPK-----DEGEGGAY--EDDVAA--------MRTLT-P--THVVFNGAVGAL---------------------- 200 (311)
T ss_pred eeeEeccc-----cccccccc--cchHHH--------HhcCC-C--CEEEECCccCCC----------------------
Confidence 11110000 00000000 000000 00000 1 124567753200
Q ss_pred CCCceeccCCCCCCCCCcccCCceEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCC
Q 008085 431 STPLIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLI 510 (578)
Q Consensus 431 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~ 510 (578)
.....++.|++++|.|.|.+. ...+.||++|++|.++...... .
T Consensus 201 ----------------------~~~~~v~~G~~~RlRiiNa~~--~~~~~~~~~g~~~~~v~~DG~~------------~ 244 (311)
T TIGR02376 201 ----------------------TGDNALTAGVGERVLFVHSQP--NRDSRPHLIGGHGDYVWVTGKF------------A 244 (311)
T ss_pred ----------------------CCCcccccCCcEEEEEEcCCC--CCCCCCeEecCCceEEEECCcc------------c
Confidence 011356789999999999753 3668999999999999984322 1
Q ss_pred CCC--cceeeeecCCcEEEEEEEecCceeEEEEeechhhh-hccceEEEEEecC
Q 008085 511 DPV--ERNTVGVPSGGWVAIRFRADNPGVWFMHCHFEVHI-SWGLKMAWIVLNG 561 (578)
Q Consensus 511 ~p~--~rDTv~v~~~~~~~irf~adnpG~w~~HCHil~H~-d~GMm~~~~V~~~ 561 (578)
.+. ..||+.|.||+...|.++++.||.|++|||...|+ ..||+..++|+..
T Consensus 245 ~~~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~g~ 298 (311)
T TIGR02376 245 NPPNRDVETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVEGA 298 (311)
T ss_pred CCCCCCcceEEECCCceEEEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEECCC
Confidence 222 36899999999999999999999999999999998 7799999988643
No 23
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.59 E-value=8.6e-14 Score=151.11 Aligned_cols=226 Identities=12% Similarity=0.153 Sum_probs=144.1
Q ss_pred EEEcCCCCC--ceEEEecCCEEEEEEEecCC-CCeeEEeecccccCCcCCCCCCC----ccccccCCCCeEEEEEEECCC
Q 008085 51 ITVNGQFPG--PRIVAREGDRLIIKVVNHVP-NNISIHWHGIRQLLSGWADGPAY----ITQCPIQTGQSYVYNFTISGQ 123 (578)
Q Consensus 51 ~~~NG~~pg--P~i~~~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DG~~~----~tq~~i~PG~~~~Y~~~~~~~ 123 (578)
+++||+.+. +++.+++|+++++||.|... ....+++.|+...... .||.+- +....|.|||+++..++. ..
T Consensus 249 ~LiNG~~~~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa-~DG~~v~Pv~vd~l~I~pGeRyDVlV~~-~~ 326 (587)
T TIGR01480 249 YLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVA-VDGQYVHPVSVDEFRIAPAETFDVIVEP-TG 326 (587)
T ss_pred EEEcCccCCCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEE-cCCcCcCceEeCeEEEcCcceeEEEEec-CC
Confidence 679999863 68999999999999999885 4577888887654332 788652 345668999999999996 56
Q ss_pred CcceEEecCccccccceeeeEEEeCCC-CCCCC-CCCC----CCcee------------EEee-----ee----------
Q 008085 124 RGTLFWHAHISWLRATVYGPLVIFPKR-GVPYP-FPKP----YKEVP------------IIFG-----EW---------- 170 (578)
Q Consensus 124 ~Gt~wYH~H~~~~~~Gl~G~liV~~~~-~~~~~-~~~~----~~e~~------------l~~~-----d~---------- 170 (578)
.|.|+..+...+. .|...+.+..... ..+.| .+.. -.+.. +... |.
T Consensus 327 ~g~~~i~a~~~~~-~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (587)
T TIGR01480 327 DDAFTIFAQDSDR-TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPM 405 (587)
T ss_pred CceEEEEEEecCC-CceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccC
Confidence 7899988765432 2333333322111 11011 1000 00000 0000 00
Q ss_pred ccc----------------------------------------chHHH--HHHhhc---------CCC------CCC-CC
Q 008085 171 FNA----------------------------------------DTEAI--INQSLQ---------TGA------GPN-VS 192 (578)
Q Consensus 171 ~~~----------------------------------------~~~~~--~~~~~~---------~g~------~~~-~~ 192 (578)
.+. ....+ +..... .+. .+. ..
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~m~~ 485 (587)
T TIGR01480 406 DHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGNMER 485 (587)
T ss_pred ccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCCCce
Confidence 000 00000 000000 000 001 11
Q ss_pred ceEEEcCCCCCCCCCCCCcceeEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEeEEEECCCceEE
Q 008085 193 DAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTN 272 (578)
Q Consensus 193 ~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGeR~d 272 (578)
..|+|||+.++ ..+.++++.|+++||||+|.+. ..+.+|+|||.|.++..||.+. ...+++.|.|||+++
T Consensus 486 ~~wtiNG~~~~-------~~~pl~v~~Gervri~l~N~t~-~~HpmHlHG~~f~v~~~~G~~~--~~~dTv~V~Pg~t~~ 555 (587)
T TIGR01480 486 FAWSFDGEAFG-------LKTPLRFNYGERLRVVLVNDTM-MAHPIHLHGMWSELEDGQGEFQ--VRKHTVDVPPGGKRS 555 (587)
T ss_pred eEEEECCccCC-------CCCceEecCCCEEEEEEECCCC-CCcceeEcCceeeeecCCCccc--ccCCceeeCCCCEEE
Confidence 24899999762 2246899999999999999885 5669999999999998888632 234789999999999
Q ss_pred EEEEeCCCCCCcceEEEecc
Q 008085 273 ILLKAKPSYPNATFLMSARP 292 (578)
Q Consensus 273 vlv~~~~~~~~g~y~l~~~~ 292 (578)
+.++++++ |+|++|||.
T Consensus 556 ~~f~ad~p---G~w~~HCH~ 572 (587)
T TIGR01480 556 FRVTADAL---GRWAYHCHM 572 (587)
T ss_pred EEEECCCC---eEEEEcCCC
Confidence 99999998 999999995
No 24
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.53 E-value=9.3e-14 Score=119.50 Aligned_cols=113 Identities=17% Similarity=0.162 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHhcccccccCceEEEEEEEE--EEEe-e--cCceeeEEE-EEcCCCCCceEEEecCCEEEEEEEecCCC
Q 008085 7 PSSLAILCVWFLFPAGLAVASITRHYKFDIK--MQNV-T--RLCHTKSII-TVNGQFPGPRIVAREGDRLIIKVVNHVPN 80 (578)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~-~--~~g~~~~~~-~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~ 80 (578)
+..|+++.+.+++...++| +.++|+++|+ +..+ + ..|.....+ ++|+++..+.|+|++||+|++++.|..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~--~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~ 81 (135)
T TIGR03096 4 KAMFAGFALGLLLMGTAQA--AEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPI 81 (135)
T ss_pred HHHhHHHHHHHhhccchhh--ccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCC
Confidence 3467777777777666666 6689999999 6666 3 568777777 99999999999999999999999999865
Q ss_pred Ce--eEEeecccccCCcCCCCCCCccccccCCCCeEEEEEEECCCCcceEEecCccccc
Q 008085 81 NI--SIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLR 137 (578)
Q Consensus 81 ~~--siH~HG~~~~~~~~~DG~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~ 137 (578)
++ .+++||. +..|.||++.+|+|.+ .++|+|||||..|...
T Consensus 82 ~H~f~i~~~gi---------------s~~I~pGet~TitF~a-dKpG~Y~y~C~~HP~~ 124 (135)
T TIGR03096 82 SEGFSIDAYGI---------------SEVIKAGETKTISFKA-DKAGAFTIWCQLHPKN 124 (135)
T ss_pred ccceEECCCCc---------------ceEECCCCeEEEEEEC-CCCEEEEEeCCCCChh
Confidence 44 3333322 1468999999999997 9999999999887654
No 25
>PRK10965 multicopper oxidase; Provisional
Probab=99.41 E-value=2.6e-11 Score=130.81 Aligned_cols=251 Identities=12% Similarity=0.114 Sum_probs=151.5
Q ss_pred EEEEEEEEEEEeecCc--------------eeeEEEEEcCCCCCceEEEecCCEEEEEEEecCC-CCeeEEe-ecc--cc
Q 008085 30 RHYKFDIKMQNVTRLC--------------HTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVP-NNISIHW-HGI--RQ 91 (578)
Q Consensus 30 ~~~~l~~~~~~~~~~g--------------~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~-~~~siH~-HG~--~~ 91 (578)
.++.|.++......+| ...+.+++||+. .|.+.+. |.++++||.|... ....+.+ .|. .+
T Consensus 180 ~d~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~v 257 (523)
T PRK10965 180 DDIPVILQDKRFSADGQIDYQLDVMTAAVGWFGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYV 257 (523)
T ss_pred ceeeEEEEeeeeCCCCceeccccccccccCccCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEE
Confidence 3566666655443333 234678999996 6998885 6699999999974 4556666 443 33
Q ss_pred cCCcCCCCCCC-----ccccccCCCCeEEEEEEECCCCcceEEecCccccccce--------eeeEEEeCCC---CCCCC
Q 008085 92 LLSGWADGPAY-----ITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRATV--------YGPLVIFPKR---GVPYP 155 (578)
Q Consensus 92 ~~~~~~DG~~~-----~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~Gl--------~G~liV~~~~---~~~~~ 155 (578)
.. .||.+- +....|.|||+++..++. .+.|.++...-.... .|+ .-.+.|.... ....|
T Consensus 258 Ia---~DG~~l~~P~~v~~l~lapGeR~dvlv~~-~~~~~~~l~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~P 332 (523)
T PRK10965 258 IA---SDGGLLAEPVKVSELPILMGERFEVLVDT-SDGKAFDLVTLPVSQ-MGMALAPFDKPLPVLRIQPLLISASGTLP 332 (523)
T ss_pred EE---eCCCcccCccEeCeEEECccceEEEEEEc-CCCceEEEEEecccC-cccccccCCCceeEEEEeccCcCCCCcCC
Confidence 33 788442 344668999999999997 556777766532111 111 1122233111 00110
Q ss_pred -----CC---C----CCCceeEEeeeecc---------cchHHHHHHh--------h--------cCC----CC-CCCCc
Q 008085 156 -----FP---K----PYKEVPIIFGEWFN---------ADTEAIINQS--------L--------QTG----AG-PNVSD 193 (578)
Q Consensus 156 -----~~---~----~~~e~~l~~~d~~~---------~~~~~~~~~~--------~--------~~g----~~-~~~~~ 193 (578)
.+ . ..+.+.+.+..+.. .......... . ..+ .. .....
T Consensus 333 ~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (523)
T PRK10965 333 DSLASLPALPSLEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHH 412 (523)
T ss_pred hhhccCCCCCcccccceeEEEEeeccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 0 01222333321100 0000000000 0 000 00 00011
Q ss_pred eEEEcCCCCCCCCCCCCcceeEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCCC---ceEEeEEEECCCce
Q 008085 194 AYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIK---SFQTDILLITPGQT 270 (578)
Q Consensus 194 ~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~---P~~~~~l~l~pGeR 270 (578)
.++|||+.++. ..+.++++.|++.+|+|+|.+....+.|||||+.|+|++.||.+.. +...|++.+.+ ++
T Consensus 413 ~~~ING~~~~~------~~~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~ 485 (523)
T PRK10965 413 ANKINGKAFDM------NKPMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GR 485 (523)
T ss_pred cccCCCeECCC------CCcceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cE
Confidence 24899997631 3467899999999999999997667899999999999999999774 35689999976 88
Q ss_pred EEEEEEeCCCC-CCcceEEEecccc
Q 008085 271 TNILLKAKPSY-PNATFLMSARPYA 294 (578)
Q Consensus 271 ~dvlv~~~~~~-~~g~y~l~~~~~~ 294 (578)
+.++++++.+. ..|.|++|||-..
T Consensus 486 ~~i~~~f~~~~~~~g~~~~HCHiL~ 510 (523)
T PRK10965 486 SEVLVKFDHDAPKEHAYMAHCHLLE 510 (523)
T ss_pred EEEEEEecCCCCCCCCEEEEeCchh
Confidence 99999998541 1279999999643
No 26
>PRK10883 FtsI repressor; Provisional
Probab=99.30 E-value=1.6e-10 Score=123.59 Aligned_cols=235 Identities=13% Similarity=0.122 Sum_probs=142.6
Q ss_pred EEEEEEEEEEeecC-----------ceeeEEEEEcCCCCCceEEEecCCEEEEEEEecCC-CCeeEEe-ecccccCCcCC
Q 008085 31 HYKFDIKMQNVTRL-----------CHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVP-NNISIHW-HGIRQLLSGWA 97 (578)
Q Consensus 31 ~~~l~~~~~~~~~~-----------g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~-~~~siH~-HG~~~~~~~~~ 97 (578)
++.|.++...+..+ |...+.+++||+. .|.|.|+.| ++++||.|... ....+++ +|....... .
T Consensus 181 d~~l~l~D~~~~~~g~~~~~~~~~~g~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa-~ 257 (471)
T PRK10883 181 DFPVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIA-G 257 (471)
T ss_pred ceeEEeeeeeeccCCCccccccccCCccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEE-e
Confidence 66667765443322 3345678999995 699999875 89999999985 5567888 555322221 6
Q ss_pred CCCCC-----ccccccCCCCeEEEEEEECCCCcceEEecCccc-cccceee------------eEEEeCCCC---CCCCC
Q 008085 98 DGPAY-----ITQCPIQTGQSYVYNFTISGQRGTLFWHAHISW-LRATVYG------------PLVIFPKRG---VPYPF 156 (578)
Q Consensus 98 DG~~~-----~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~-~~~Gl~G------------~liV~~~~~---~~~~~ 156 (578)
||-+. +.+..|.|||+++.-.++ .+.+.+.+++-... ....+.+ .+-++.... ...+.
T Consensus 258 DGg~~~~P~~~~~l~l~pGeR~dvlVd~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (471)
T PRK10883 258 DQGFLPAPVSVKQLSLAPGERREILVDM-SNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPLVTDNL 336 (471)
T ss_pred CCCcccCCcEeCeEEECCCCeEEEEEEC-CCCceEEEECCCccccccccccccCCccccccceeEEEEccccccCCCCcC
Confidence 85332 345678999999999997 55567777763211 1111111 111111110 00000
Q ss_pred CCCCCceeEEeeeecccchHHHHHHhhcCCCCCCCCceEEEcCCCCCCCCCCCCcceeEEEecCcEEEEEEEecCCCCeE
Q 008085 157 PKPYKEVPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDEL 236 (578)
Q Consensus 157 ~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~ 236 (578)
+.......+ ........ ...... .+.+.|||+.++. ..+.++++.|++++|+|.|.. .+
T Consensus 337 p~~l~~~~~-----~~~~~~~~-~~~~l~------~~~~~INg~~~~~------~~~~~~~~~g~~e~W~~~n~~---~H 395 (471)
T PRK10883 337 PMRLLPDEI-----MEGSPIRS-REISLG------DDLPGINGALWDM------NRIDVTAQQGTWERWTVRADM---PQ 395 (471)
T ss_pred ChhhcCCCC-----CCCCCcce-EEEEec------CCcCccCCcccCC------CcceeecCCCCEEEEEEECCC---Cc
Confidence 000000000 00000000 000001 1234699998631 234578999999999998863 57
Q ss_pred EEEEcCceEEEEEeCCCCCCc---eEEeEEEECCCceEEEEEEeCCCCCCc---ceEEEecccc
Q 008085 237 FFSIANHSVTVVDVDAIYIKS---FQTDILLITPGQTTNILLKAKPSYPNA---TFLMSARPYA 294 (578)
Q Consensus 237 ~~~i~gh~~~via~DG~~~~P---~~~~~l~l~pGeR~dvlv~~~~~~~~g---~y~l~~~~~~ 294 (578)
.||||+|.|+|++.||....| -..|++.+ + +++.|+++|+.+. + .|++|||-+.
T Consensus 396 P~HlHg~~FqVl~~~G~~~~~~~~gwkDTV~v-~-~~v~i~~~f~~~~--~~~~~~m~HCHiLe 455 (471)
T PRK10883 396 AFHIEGVMFLIRNVNGAMPFPEDRGWKDTVWV-D-GQVELLVYFGQPS--WAHFPFLFYSQTLE 455 (471)
T ss_pred CEeECCccEEEEEecCCCCCccccCcCcEEEc-C-CeEEEEEEecCCC--CCCCcEEeeccccc
Confidence 999999999999999986544 35799999 3 5799999999873 3 7999999654
No 27
>PLN02835 oxidoreductase
Probab=99.25 E-value=4.2e-10 Score=121.94 Aligned_cols=239 Identities=14% Similarity=0.137 Sum_probs=147.3
Q ss_pred eEEEEEcCCCCCceEEEecCCEEEEEEEecCC-CCeeEEeecccccCCcCCCCCCC----ccccccCCCCeEEEEEEECC
Q 008085 48 KSIITVNGQFPGPRIVAREGDRLIIKVVNHVP-NNISIHWHGIRQLLSGWADGPAY----ITQCPIQTGQSYVYNFTISG 122 (578)
Q Consensus 48 ~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DG~~~----~tq~~i~PG~~~~Y~~~~~~ 122 (578)
.+.+++||+. .|++.+++|+++++||.|... ....+|..|....... .||.+- +....|.|||+++..+++.+
T Consensus 191 ~d~~liNG~~-~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~-~DG~~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 191 PDGVLINGQT-QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVE-VEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred CceEEEcccc-CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEE-ECCccCCCceeeEEEECcCceEEEEEEcCC
Confidence 4678999997 489999999999999999985 4678888888765432 788652 33456899999999999866
Q ss_pred CCcceEEecCccccc--cceeeeEEEeCCCC---CCCCC-CCCCC--------ceeEEeeeecccchH---HHHHHh--h
Q 008085 123 QRGTLFWHAHISWLR--ATVYGPLVIFPKRG---VPYPF-PKPYK--------EVPIIFGEWFNADTE---AIINQS--L 183 (578)
Q Consensus 123 ~~Gt~wYH~H~~~~~--~Gl~G~liV~~~~~---~~~~~-~~~~~--------e~~l~~~d~~~~~~~---~~~~~~--~ 183 (578)
.+|.||.+.-..... ....+.|-.++... .+.|. +..+. .....+......... ...... .
T Consensus 269 ~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 348 (539)
T PLN02835 269 SPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPT 348 (539)
T ss_pred CCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCC
Confidence 689999986321111 11222232222111 01110 00000 000000000000000 000000 0
Q ss_pred ----cCCCCC--CCCceEEEcCCCCCCCC---------------CCC-------C-----cceeEEEecCcEEEEEEEec
Q 008085 184 ----QTGAGP--NVSDAYTINGLPGPLYN---------------CSA-------K-----DTFKLKVKPGKTYLLRLINA 230 (578)
Q Consensus 184 ----~~g~~~--~~~~~~liNG~~~~~~~---------------~~~-------~-----~~~~~~v~~G~~~rlRliNa 230 (578)
...... .....+.+||..+.... |.. . ..-.+.++.|+++.|-|-|.
T Consensus 349 ~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~ 428 (539)
T PLN02835 349 KTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNN 428 (539)
T ss_pred ceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECC
Confidence 000000 00135778888763100 000 0 11235677899999999998
Q ss_pred CCCCeEEEEEcCceEEEEEe-CCCC----------CCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEecc
Q 008085 231 ALNDELFFSIANHSVTVVDV-DAIY----------IKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARP 292 (578)
Q Consensus 231 ~~~~~~~~~i~gh~~~via~-DG~~----------~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~ 292 (578)
+.. .+.||+|||.|+|++. +|.+ ..|...|++.+.+++.+-|-+++++| |.|.+|||-
T Consensus 429 ~~~-~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNP---G~Wl~HCHi 497 (539)
T PLN02835 429 EKT-MQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQ---GMWNMRSAI 497 (539)
T ss_pred CCC-CCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcCC---EEeeeeecc
Confidence 643 5799999999999987 5522 24889999999999999999999999 999999995
No 28
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.24 E-value=8.6e-10 Score=120.44 Aligned_cols=240 Identities=14% Similarity=0.166 Sum_probs=144.2
Q ss_pred EEEEEcCCC-C--------CceEEEecCCEEEEEEEecCC-CCeeEEeecccccCCcCCCCCCC----ccccccCCCCeE
Q 008085 49 SIITVNGQF-P--------GPRIVAREGDRLIIKVVNHVP-NNISIHWHGIRQLLSGWADGPAY----ITQCPIQTGQSY 114 (578)
Q Consensus 49 ~~~~~NG~~-p--------gP~i~~~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DG~~~----~tq~~i~PG~~~ 114 (578)
..+++||+. + .++|.|++|+++++||.|... ....+|.+|....... .||.+- +....|.|||++
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa-~DG~~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVE-VDATYTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEE-eCCcccCceEeCeEEecCCCEE
Confidence 568999984 1 148999999999999999974 4567888887654432 788652 334568999999
Q ss_pred EEEEEECCCCcceEEecCccc--c---c-cceeeeEEEeCCCCCCCCC----CCCCCc---------e-eEEeeeecc--
Q 008085 115 VYNFTISGQRGTLFWHAHISW--L---R-ATVYGPLVIFPKRGVPYPF----PKPYKE---------V-PIIFGEWFN-- 172 (578)
Q Consensus 115 ~Y~~~~~~~~Gt~wYH~H~~~--~---~-~Gl~G~liV~~~~~~~~~~----~~~~~e---------~-~l~~~d~~~-- 172 (578)
+..+++.+.+|.||.+.+... . . ..-.+.|...+......+. +..+.. . .+....+-.
T Consensus 246 dVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANV 325 (539)
T ss_pred EEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCC
Confidence 999998555899999987431 1 1 1122233322222111110 000000 0 000000000
Q ss_pred -cchH-H---HHHHhhcCCC-----C-CCCCceEEEcCCCCCC--------------------C-------CC-CCC---
Q 008085 173 -ADTE-A---IINQSLQTGA-----G-PNVSDAYTINGLPGPL--------------------Y-------NC-SAK--- 210 (578)
Q Consensus 173 -~~~~-~---~~~~~~~~g~-----~-~~~~~~~liNG~~~~~--------------------~-------~~-~~~--- 210 (578)
.... . .+........ . ....-.+.|||+.+.. + -| ++.
T Consensus 326 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 405 (539)
T TIGR03389 326 PVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLP 405 (539)
T ss_pred CCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcc
Confidence 0000 0 0000000000 0 0001235778875310 0 00 000
Q ss_pred -------cceeEEEecCcEEEEEEEecCC--CCeEEEEEcCceEEEEEeC-CCC-----------CCceEEeEEEECCCc
Q 008085 211 -------DTFKLKVKPGKTYLLRLINAAL--NDELFFSIANHSVTVVDVD-AIY-----------IKSFQTDILLITPGQ 269 (578)
Q Consensus 211 -------~~~~~~v~~G~~~rlRliNa~~--~~~~~~~i~gh~~~via~D-G~~-----------~~P~~~~~l~l~pGe 269 (578)
....+.++.|+++++.|.|.+. ...+.||+|||.|+|++.+ |.+ ..|...|++.+.++.
T Consensus 406 ~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g 485 (539)
T TIGR03389 406 NNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGG 485 (539)
T ss_pred cccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCc
Confidence 1134788899999999999863 3368999999999999986 321 147778999999999
Q ss_pred eEEEEEEeCCCCCCcceEEEecc
Q 008085 270 TTNILLKAKPSYPNATFLMSARP 292 (578)
Q Consensus 270 R~dvlv~~~~~~~~g~y~l~~~~ 292 (578)
.+-|-+++++| |.|.+|||-
T Consensus 486 ~vvirf~adNP---G~W~~HCHi 505 (539)
T TIGR03389 486 WAAIRFVADNP---GVWFMHCHL 505 (539)
T ss_pred eEEEEEecCCC---eEEEEEecc
Confidence 99999999999 999999995
No 29
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.17 E-value=8.9e-10 Score=118.21 Aligned_cols=232 Identities=16% Similarity=0.128 Sum_probs=148.6
Q ss_pred ceeeEEEEEcCCCCCceEEEecCCEEEEEEEecC-CCCeeEEeecccccCCcCCCCCC----CccccccCCCCeEEEEEE
Q 008085 45 CHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHV-PNNISIHWHGIRQLLSGWADGPA----YITQCPIQTGQSYVYNFT 119 (578)
Q Consensus 45 g~~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~~DG~~----~~tq~~i~PG~~~~Y~~~ 119 (578)
+.......+||+. -|.+.+. +..+++||.|.. .....+++.|.+..... .||.+ .+.+..+.|||+++...+
T Consensus 186 ~~~g~~~~vnG~~-~p~~~~~-~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~-~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAI-LPFKAVP-GGVVRLRLLNAGNARTYHLALGGGPLTVIA-VDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCc-cceeecC-CCeEEEEEEecCCceEEEEEecCceEEEEE-eCCcCcCceeeeeEEecCcceEEEEEE
Confidence 4566777888854 3555554 455999999998 66677777766654432 67755 466678999999999999
Q ss_pred ECCCCcceEEecCccccccceeeeEEEeCCCCCCCCC-------CCCC---CceeEEeeeecccchHHHHHHhhcCCCCC
Q 008085 120 ISGQRGTLFWHAHISWLRATVYGPLVIFPKRGVPYPF-------PKPY---KEVPIIFGEWFNADTEAIINQSLQTGAGP 189 (578)
Q Consensus 120 ~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~-------~~~~---~e~~l~~~d~~~~~~~~~~~~~~~~g~~~ 189 (578)
. ...|++-+.|.......-+.+..-.........+. ...+ ......................... ..
T Consensus 263 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~ 339 (451)
T COG2132 263 M-NDGGAVTLTALGEDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLI--GG 339 (451)
T ss_pred c-CCCCeEEEEeccccCCceeeeeeccccccccccccccccccCCCcchhhccccccchhhcCCCcccccccchhh--cc
Confidence 7 55889999998732222222222211111000000 0011 1111111111111110000000000 01
Q ss_pred CCCceEEEcCCCCCCCCCCCCcceeEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCC---CceEEeEEEEC
Q 008085 190 NVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYI---KSFQTDILLIT 266 (578)
Q Consensus 190 ~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~---~P~~~~~l~l~ 266 (578)
.....+.+||+.++. ....+.++.|+++||+|.|-+. -.+.||+||+.|.|++.| ... .+...|++.+.
T Consensus 340 ~~~~~~~~n~~~~~~------~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kDTv~v~ 411 (451)
T COG2132 340 IGGYVWAINGKAFDD------NRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKDTVLVA 411 (451)
T ss_pred cccccccccCccCCC------CcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccceEEEeC
Confidence 123568889987632 2467899999999999999997 667999999999999999 332 45788999999
Q ss_pred CCceEEEEEEeCCCCCCcceEEEeccc
Q 008085 267 PGQTTNILLKAKPSYPNATFLMSARPY 293 (578)
Q Consensus 267 pGeR~dvlv~~~~~~~~g~y~l~~~~~ 293 (578)
||+|+.+.++++.+ |.|+++||..
T Consensus 412 ~~~~~~v~~~a~~~---g~~~~HCH~l 435 (451)
T COG2132 412 PGERLLVRFDADYP---GPWMFHCHIL 435 (451)
T ss_pred CCeEEEEEEeCCCC---CceEEeccch
Confidence 99999999999998 8999999964
No 30
>PLN02604 oxidoreductase
Probab=98.99 E-value=2.6e-09 Score=117.02 Aligned_cols=92 Identities=20% Similarity=0.295 Sum_probs=71.5
Q ss_pred eEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEec
Q 008085 454 KVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRAD 533 (578)
Q Consensus 454 ~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~ad 533 (578)
+.+.++.|+++++.+.|.. ....|+||+||... .+. .|. ++ ........|+||+...++|+++
T Consensus 55 P~i~~~~Gd~v~v~v~N~l--~~~~~~iH~HG~~~--~~~---~~~---DG-------~~~~tq~~i~pg~s~~y~f~~~ 117 (566)
T PLN02604 55 PTILAQQGDTVIVELKNSL--LTENVAIHWHGIRQ--IGT---PWF---DG-------TEGVTQCPILPGETFTYEFVVD 117 (566)
T ss_pred CcEEEECCCEEEEEEEeCC--CCCCCCEEeCCCCC--CCC---ccc---cC-------CCccccCccCCCCeEEEEEEcC
Confidence 3577889999999999963 23689999999942 111 000 00 0112345789999999999999
Q ss_pred CceeEEEEeechhhhhccceEEEEEecCC
Q 008085 534 NPGVWFMHCHFEVHISWGLKMAWIVLNGN 562 (578)
Q Consensus 534 npG~w~~HCHil~H~d~GMm~~~~V~~~~ 562 (578)
++|.|.||||...|++.||+..+.|+++.
T Consensus 118 ~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 118 RPGTYLYHAHYGMQREAGLYGSIRVSLPR 146 (566)
T ss_pred CCEEEEEeeCcHHHHhCCCeEEEEEEecC
Confidence 99999999999999999999999998764
No 31
>PLN02168 copper ion binding / pectinesterase
Probab=98.98 E-value=5.9e-08 Score=105.14 Aligned_cols=240 Identities=16% Similarity=0.195 Sum_probs=144.0
Q ss_pred eEEEEEcCCCC-CceEEEecCCEEEEEEEecCC-CCeeEEeecccccCCcCCCCCC----CccccccCCCCeEEEEEEEC
Q 008085 48 KSIITVNGQFP-GPRIVAREGDRLIIKVVNHVP-NNISIHWHGIRQLLSGWADGPA----YITQCPIQTGQSYVYNFTIS 121 (578)
Q Consensus 48 ~~~~~~NG~~p-gP~i~~~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DG~~----~~tq~~i~PG~~~~Y~~~~~ 121 (578)
...+++||+.+ .|+|.+++|+++++|+.|... ....++..|....... .||.+ .+.+..|.|||+++..++++
T Consensus 188 ~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydvlv~a~ 266 (545)
T PLN02168 188 PDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVE-TEGTYVQKRVYSSLDIHVGQSYSVLVTAK 266 (545)
T ss_pred CCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEE-ECCeECCCceeeEEEEcCCceEEEEEEcC
Confidence 45689999952 589999999999999999874 3567788777654432 78854 23456799999999999985
Q ss_pred CCC-c---ceEEecCccccccceee-eEEEeCCCCCC--CCCC---CC-CC----ceeEEee-eec---ccchHH----H
Q 008085 122 GQR-G---TLFWHAHISWLRATVYG-PLVIFPKRGVP--YPFP---KP-YK----EVPIIFG-EWF---NADTEA----I 178 (578)
Q Consensus 122 ~~~-G---t~wYH~H~~~~~~Gl~G-~liV~~~~~~~--~~~~---~~-~~----e~~l~~~-d~~---~~~~~~----~ 178 (578)
++. | .||.+.-.......+.+ +++........ .|.+ .. +. +..+.+. ... ...... .
T Consensus 267 ~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~ 346 (545)
T PLN02168 267 TDPVGIYRSYYIVATARFTDAYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHY 346 (545)
T ss_pred CCCCCCcceEEEEEEecccCCCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccccc
Confidence 443 4 89988664211111112 33333222110 1111 00 00 1000000 000 000000 0
Q ss_pred ----HH-HhhcCCCC--CCCCceEEEcCCCCCC----------CC-----CCC---C---------cceeEEEecCcEEE
Q 008085 179 ----IN-QSLQTGAG--PNVSDAYTINGLPGPL----------YN-----CSA---K---------DTFKLKVKPGKTYL 224 (578)
Q Consensus 179 ----~~-~~~~~g~~--~~~~~~~liNG~~~~~----------~~-----~~~---~---------~~~~~~v~~G~~~r 224 (578)
.. ........ ......+.+||..+.. +. ..+ . ..-.+.++.|+++.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~Ve 426 (545)
T PLN02168 347 GRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYH 426 (545)
T ss_pred cccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEEE
Confidence 00 00000000 0001357788887631 10 000 0 12236788899998
Q ss_pred EEEEecCCCCeEEEEEcCceEEEEEe-----CC------CCCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEecc
Q 008085 225 LRLINAALNDELFFSIANHSVTVVDV-----DA------IYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARP 292 (578)
Q Consensus 225 lRliNa~~~~~~~~~i~gh~~~via~-----DG------~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~ 292 (578)
+=|-|... ..+.||+|||.|+|++. |+ ++..|...|++.+.++.=+-|-+++++| |.|.+|||-
T Consensus 427 iViqn~~~-~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNP---G~Wl~HCHi 501 (545)
T PLN02168 427 IVFQNPLF-SLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQ---GMWNVRSQK 501 (545)
T ss_pred EEEeCCCC-CCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCC---eEEeeeecC
Confidence 88888753 46799999999999977 21 2246889999999999999999999999 999999994
No 32
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.96 E-value=8.6e-08 Score=104.80 Aligned_cols=228 Identities=14% Similarity=0.117 Sum_probs=134.4
Q ss_pred eEEEecCCEEEEEEEecC-CCCeeEEeecccccCCcCCCCCCC----ccccccCCCCeEEEEEEECCCC-cceEEecCcc
Q 008085 61 RIVAREGDRLIIKVVNHV-PNNISIHWHGIRQLLSGWADGPAY----ITQCPIQTGQSYVYNFTISGQR-GTLFWHAHIS 134 (578)
Q Consensus 61 ~i~~~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~~DG~~~----~tq~~i~PG~~~~Y~~~~~~~~-Gt~wYH~H~~ 134 (578)
.|.|++|+++++||.|.. .....+++.|....... .||.+- +....|.|||+++..+++.+.+ |.||.+.-..
T Consensus 204 ~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa-~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~ 282 (541)
T TIGR03388 204 ILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVE-ADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVR 282 (541)
T ss_pred EEEECCCCEEEEEEEcccccceEEEEECCCEEEEEE-eCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecc
Confidence 589999999999999987 45667777777654332 788542 3345689999999999984434 5899986543
Q ss_pred ccc--cceeeeEEEeCCCCC-CCC-C-----CCCCC-------ceeEEeeeecccchHHHHHH-h-hcCCCCCCCCceEE
Q 008085 135 WLR--ATVYGPLVIFPKRGV-PYP-F-----PKPYK-------EVPIIFGEWFNADTEAIINQ-S-LQTGAGPNVSDAYT 196 (578)
Q Consensus 135 ~~~--~Gl~G~liV~~~~~~-~~~-~-----~~~~~-------e~~l~~~d~~~~~~~~~~~~-~-~~~g~~~~~~~~~l 196 (578)
... .....+++....... ..+ . +..+. +..++-.............. . ...+........+.
T Consensus 283 ~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (541)
T TIGR03388 283 GRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTKWA 362 (541)
T ss_pred cCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEEEE
Confidence 331 111124444322111 100 0 00000 00000000000000000000 0 00000000112367
Q ss_pred EcCCCCCC-------------------------CCCC-------C-----CcceeEEEecCcEEEEEEEecCC-----CC
Q 008085 197 INGLPGPL-------------------------YNCS-------A-----KDTFKLKVKPGKTYLLRLINAAL-----ND 234 (578)
Q Consensus 197 iNG~~~~~-------------------------~~~~-------~-----~~~~~~~v~~G~~~rlRliNa~~-----~~ 234 (578)
+||..+.. +.+. . ...-.+.++.|+++.+.|.|... ..
T Consensus 363 ~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~ 442 (541)
T TIGR03388 363 INNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSE 442 (541)
T ss_pred ECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCC
Confidence 78776520 0000 0 00124788899999999999752 34
Q ss_pred eEEEEEcCceEEEEEeC-CCC-----------CCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEecc
Q 008085 235 ELFFSIANHSVTVVDVD-AIY-----------IKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARP 292 (578)
Q Consensus 235 ~~~~~i~gh~~~via~D-G~~-----------~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~ 292 (578)
.+.||+|||.|+|++.. |.+ ..|...|++.+.++.-+-|-+++++| |.|.+|||.
T Consensus 443 ~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNP---G~W~~HCHi 509 (541)
T TIGR03388 443 THPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNP---GVWAFHCHI 509 (541)
T ss_pred CCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCC---eEeeeeccc
Confidence 68999999999999986 432 14778899999999999999999999 999999995
No 33
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.95 E-value=5.3e-08 Score=106.18 Aligned_cols=240 Identities=16% Similarity=0.160 Sum_probs=140.6
Q ss_pred EEEEEcCCC---------------CCceEEEecCCEEEEEEEecCCC-CeeEEeeccc-ccCCcCCCCCCC----ccccc
Q 008085 49 SIITVNGQF---------------PGPRIVAREGDRLIIKVVNHVPN-NISIHWHGIR-QLLSGWADGPAY----ITQCP 107 (578)
Q Consensus 49 ~~~~~NG~~---------------pgP~i~~~~Gd~v~v~l~N~l~~-~~siH~HG~~-~~~~~~~DG~~~----~tq~~ 107 (578)
..+++||+. ..|+|+|++|+++++|+.|.... ...+++.|.. ..... .||.+- +....
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa-~DG~~~~P~~v~~l~ 250 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIE-ADGSYTKPAKIDHLQ 250 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEE-eCCCCCCceEeCeEE
Confidence 467899983 13789999999999999999854 4677777766 33322 788741 23456
Q ss_pred cCCCCeEEEEEEECCC-------CcceEEecCccccccce--eeeEEEeCCCCCCCC---C-CC--C------CCceeEE
Q 008085 108 IQTGQSYVYNFTISGQ-------RGTLFWHAHISWLRATV--YGPLVIFPKRGVPYP---F-PK--P------YKEVPII 166 (578)
Q Consensus 108 i~PG~~~~Y~~~~~~~-------~Gt~wYH~H~~~~~~Gl--~G~liV~~~~~~~~~---~-~~--~------~~e~~l~ 166 (578)
|.|||+++..+++.+. +|-||-..-.......+ .+.|..++......+ . +. . ..+..+.
T Consensus 251 l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~ 330 (538)
T TIGR03390 251 LGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYELE 330 (538)
T ss_pred EccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhheeeE
Confidence 8999999999998432 48899775432211112 333333212111111 0 00 0 0111111
Q ss_pred -eeeec-c--cchHHHHHHh-hcCCCC---CCCCceEEEcCCCCCC--C----------CC---------------CCCc
Q 008085 167 -FGEWF-N--ADTEAIINQS-LQTGAG---PNVSDAYTINGLPGPL--Y----------NC---------------SAKD 211 (578)
Q Consensus 167 -~~d~~-~--~~~~~~~~~~-~~~g~~---~~~~~~~liNG~~~~~--~----------~~---------------~~~~ 211 (578)
+..-. . ......-... ...+.. ......+.+||..+.. . +. ....
T Consensus 331 pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (538)
T TIGR03390 331 PLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFDPE 410 (538)
T ss_pred ecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcCcC
Confidence 00000 0 0000000000 000000 0112457889886532 0 00 0001
Q ss_pred ceeEEEecCcEEEEEEEecC-------CCCeEEEEEcCceEEEEEe-CCCC-----------CCceEEeEEEEC------
Q 008085 212 TFKLKVKPGKTYLLRLINAA-------LNDELFFSIANHSVTVVDV-DAIY-----------IKSFQTDILLIT------ 266 (578)
Q Consensus 212 ~~~~~v~~G~~~rlRliNa~-------~~~~~~~~i~gh~~~via~-DG~~-----------~~P~~~~~l~l~------ 266 (578)
.-.+.++.|+++++.|.|.. ....+.||+|||+|+|++. +|.+ ..|...|++.+.
T Consensus 411 ~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~ 490 (538)
T TIGR03390 411 TRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKV 490 (538)
T ss_pred ceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccc
Confidence 12467888999999999975 2457899999999999986 4533 248889999883
Q ss_pred ----CCceEEEEEEeCCCCCCcceEEEecc
Q 008085 267 ----PGQTTNILLKAKPSYPNATFLMSARP 292 (578)
Q Consensus 267 ----pGeR~dvlv~~~~~~~~g~y~l~~~~ 292 (578)
++.-+-|.++++++ |.|.||||-
T Consensus 491 ~~~~~~~~~~ir~~~dNP---G~W~~HCHi 517 (538)
T TIGR03390 491 VPGAPAGWRAWRIRVTNP---GVWMMHCHI 517 (538)
T ss_pred cccCCCceEEEEEEcCCC---eeEEEeccc
Confidence 77888999999998 999999995
No 34
>PLN02354 copper ion binding / oxidoreductase
Probab=98.94 E-value=5.2e-08 Score=105.99 Aligned_cols=240 Identities=13% Similarity=0.141 Sum_probs=145.6
Q ss_pred eEEEEEcCCCC------CceEEEecCCEEEEEEEecCC-CCeeEEeecccccCCcCCCCCC----CccccccCCCCeEEE
Q 008085 48 KSIITVNGQFP------GPRIVAREGDRLIIKVVNHVP-NNISIHWHGIRQLLSGWADGPA----YITQCPIQTGQSYVY 116 (578)
Q Consensus 48 ~~~~~~NG~~p------gP~i~~~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DG~~----~~tq~~i~PG~~~~Y 116 (578)
...+++||+-. -|+|.|++|++.++||.|... ....+|..|...... ..||++ .+....|.|||+++.
T Consensus 189 ~d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVI-a~DG~~v~p~~~~~l~i~~GqRydV 267 (552)
T PLN02354 189 PDGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLV-EMEGSHVLQNDYDSLDVHVGQCFSV 267 (552)
T ss_pred CCeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEE-EeCCcccCCcceeEEEEccCceEEE
Confidence 35789999841 379999999999999999984 567788888876443 279975 233456999999999
Q ss_pred EEEECCCCcceEEecCccccc--cceeeeEEEeCCCCCC-CCCCCCCCceeEEe---eeecc-------cc---hH-HH-
Q 008085 117 NFTISGQRGTLFWHAHISWLR--ATVYGPLVIFPKRGVP-YPFPKPYKEVPIIF---GEWFN-------AD---TE-AI- 178 (578)
Q Consensus 117 ~~~~~~~~Gt~wYH~H~~~~~--~Gl~G~liV~~~~~~~-~~~~~~~~e~~l~~---~d~~~-------~~---~~-~~- 178 (578)
.+++.+.+|.||......... ....+.|...+..... ...+.......... .+... .. .. ..
T Consensus 268 lv~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~ 347 (552)
T PLN02354 268 LVTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYG 347 (552)
T ss_pred EEECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCccccc
Confidence 999866689999988743211 1223333332221100 00110000000000 00000 00 00 00
Q ss_pred -H--H-Hh-hcCCC-CCCCCceEEEcCCCCCC----------CCCC-C-------------------CcceeEEEecCcE
Q 008085 179 -I--N-QS-LQTGA-GPNVSDAYTINGLPGPL----------YNCS-A-------------------KDTFKLKVKPGKT 222 (578)
Q Consensus 179 -~--~-~~-~~~g~-~~~~~~~~liNG~~~~~----------~~~~-~-------------------~~~~~~~v~~G~~ 222 (578)
. . .. ..... .......+.|||..+.. +... + ...-.+.++.|++
T Consensus 348 ~~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~ 427 (552)
T PLN02354 348 KINITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTF 427 (552)
T ss_pred cccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCE
Confidence 0 0 00 00000 00001356788876521 0000 0 0112467778899
Q ss_pred EEEEEEecCCCCeEEEEEcCceEEEEEeC-CC----------CCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEec
Q 008085 223 YLLRLINAALNDELFFSIANHSVTVVDVD-AI----------YIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSAR 291 (578)
Q Consensus 223 ~rlRliNa~~~~~~~~~i~gh~~~via~D-G~----------~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~ 291 (578)
+.+-|.|... ..+.||+|||.|+|++.- |. +..|...|++.+.++.=.-+-+++++| |.|.+|||
T Consensus 428 VeiVi~n~~~-~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNP---GvW~~HCH 503 (552)
T PLN02354 428 VEIIFENHEK-SMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNA---GMWNIRSE 503 (552)
T ss_pred EEEEEeCCCC-CCCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecCC---eEEeeecc
Confidence 9999998753 367999999999999773 21 125888999999999999999999999 99999999
Q ss_pred c
Q 008085 292 P 292 (578)
Q Consensus 292 ~ 292 (578)
-
T Consensus 504 i 504 (552)
T PLN02354 504 N 504 (552)
T ss_pred c
Confidence 5
No 35
>PLN02991 oxidoreductase
Probab=98.93 E-value=1.4e-07 Score=102.10 Aligned_cols=241 Identities=12% Similarity=0.092 Sum_probs=144.0
Q ss_pred eeEEEEEcCCCCCceEEEecCCEEEEEEEecCCC-CeeEEeecccccCCcCCCCCC----CccccccCCCCeEEEEEEEC
Q 008085 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPN-NISIHWHGIRQLLSGWADGPA----YITQCPIQTGQSYVYNFTIS 121 (578)
Q Consensus 47 ~~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~-~~siH~HG~~~~~~~~~DG~~----~~tq~~i~PG~~~~Y~~~~~ 121 (578)
..+.+++||+...+++.|++|+++++||.|.... ...++..|....... .||.+ .+.+..|.|||+++...++.
T Consensus 189 ~~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~~~p~~~~~l~i~~GQRydvlv~a~ 267 (543)
T PLN02991 189 LPDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVE-VEGTHTIQTPFSSLDVHVGQSYSVLITAD 267 (543)
T ss_pred CCCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEE-eCCccccceeeeEEEEcCCcEEEEEEECC
Confidence 3467899999766899999999999999999754 467777777654432 79865 23456689999999999987
Q ss_pred CCCcceEEecCccccccceeeeEEEe--CCCC-CCCCCCCC--CCceeEEee---eecc-----cc--hH--HH----HH
Q 008085 122 GQRGTLFWHAHISWLRATVYGPLVIF--PKRG-VPYPFPKP--YKEVPIIFG---EWFN-----AD--TE--AI----IN 180 (578)
Q Consensus 122 ~~~Gt~wYH~H~~~~~~Gl~G~liV~--~~~~-~~~~~~~~--~~e~~l~~~---d~~~-----~~--~~--~~----~~ 180 (578)
+..|.||.-.-.......+.+.-|++ .... ...+.+.. +.+...-.. +... .. .. .. ..
T Consensus 268 ~~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~ 347 (543)
T PLN02991 268 QPAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINIT 347 (543)
T ss_pred CCCCcEEEEEeeccCCCCcceEEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccc
Confidence 77899997754311111112222233 2211 00011100 000000000 0000 00 00 00 00
Q ss_pred Hhh-cCCCCC--CCCceEEEcCCCCCC----------CCCCC-----------------CcceeEEEecCcEEEEEEEec
Q 008085 181 QSL-QTGAGP--NVSDAYTINGLPGPL----------YNCSA-----------------KDTFKLKVKPGKTYLLRLINA 230 (578)
Q Consensus 181 ~~~-~~g~~~--~~~~~~liNG~~~~~----------~~~~~-----------------~~~~~~~v~~G~~~rlRliNa 230 (578)
... ...... ...-.+.|||..+.. ++.++ ...-.+.++.|+++.+=|-|.
T Consensus 348 ~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~ 427 (543)
T PLN02991 348 RTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENW 427 (543)
T ss_pred eeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCC
Confidence 000 000000 001256788876531 00000 011235667888888888886
Q ss_pred CCCCeEEEEEcCceEEEEEeC-CC----------CCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEecc
Q 008085 231 ALNDELFFSIANHSVTVVDVD-AI----------YIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARP 292 (578)
Q Consensus 231 ~~~~~~~~~i~gh~~~via~D-G~----------~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~ 292 (578)
.. ..+.||+|||.|+|++.. |. +..|...|++.+.++.=+-|-+++++| |.|.+|||-
T Consensus 428 ~~-~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNP---G~W~~HCHi 496 (543)
T PLN02991 428 ED-IVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNV---GMWNLRSEL 496 (543)
T ss_pred CC-CCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCCC---EEeeeeeCc
Confidence 54 367999999999999863 21 235888999999999999999999999 999999995
No 36
>PLN02792 oxidoreductase
Probab=98.89 E-value=2.4e-07 Score=100.40 Aligned_cols=241 Identities=14% Similarity=0.133 Sum_probs=144.7
Q ss_pred eeEEEEEcCCC--CCceEEEecCCEEEEEEEecCC-CCeeEEeecccccCCcCCCCCC----CccccccCCCCeEEEEEE
Q 008085 47 TKSIITVNGQF--PGPRIVAREGDRLIIKVVNHVP-NNISIHWHGIRQLLSGWADGPA----YITQCPIQTGQSYVYNFT 119 (578)
Q Consensus 47 ~~~~~~~NG~~--pgP~i~~~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DG~~----~~tq~~i~PG~~~~Y~~~ 119 (578)
..+.+++||+- ..++|.|++|+++++||.|... ....++..|....... .||.+ .++...|.|||+++...+
T Consensus 178 ~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~-~DG~~v~p~~~~~l~i~~GqRydVlV~ 256 (536)
T PLN02792 178 MPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIE-VEGTHTVQSMYTSLDIHVGQTYSVLVT 256 (536)
T ss_pred CCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEE-eCCccCCCcceeEEEEccCceEEEEEE
Confidence 34678999984 2479999999999999999974 4577888887654432 78864 234466999999999999
Q ss_pred ECCCCcceEEecCccccccceee-eEEEeCCCCCCC---C-CCCC-CCceeEEee---eeccc-----chH----HH--H
Q 008085 120 ISGQRGTLFWHAHISWLRATVYG-PLVIFPKRGVPY---P-FPKP-YKEVPIIFG---EWFNA-----DTE----AI--I 179 (578)
Q Consensus 120 ~~~~~Gt~wYH~H~~~~~~Gl~G-~liV~~~~~~~~---~-~~~~-~~e~~l~~~---d~~~~-----~~~----~~--~ 179 (578)
+.+.+|.||...........+.+ +|+-........ + .+.. +.....-.. ++... ... .. +
T Consensus 257 a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 336 (536)
T PLN02792 257 MDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKM 336 (536)
T ss_pred cCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCccccccee
Confidence 86668999988664211111122 333332211110 0 0000 000000000 00000 000 00 0
Q ss_pred H--Hhh-cCCCCC--CCCceEEEcCCCCCC----------CC---C-C----CC----------cceeEEEecCcEEEEE
Q 008085 180 N--QSL-QTGAGP--NVSDAYTINGLPGPL----------YN---C-S----AK----------DTFKLKVKPGKTYLLR 226 (578)
Q Consensus 180 ~--~~~-~~g~~~--~~~~~~liNG~~~~~----------~~---~-~----~~----------~~~~~~v~~G~~~rlR 226 (578)
. ... ...... ...-.+.+||..+.. +. . + .. ..-.+.++.|+++.+-
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiV 416 (536)
T PLN02792 337 KISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEII 416 (536)
T ss_pred ccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEE
Confidence 0 000 000000 001246678876531 00 0 0 00 1234678889999999
Q ss_pred EEecCCCCeEEEEEcCceEEEEEe-CCC----------CCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEecc
Q 008085 227 LINAALNDELFFSIANHSVTVVDV-DAI----------YIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARP 292 (578)
Q Consensus 227 liNa~~~~~~~~~i~gh~~~via~-DG~----------~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~ 292 (578)
|-|.... .+.||+|||+|+||+. +|. +..|...|++.+.++.=.-|-+.+++| |.|.+|||-
T Consensus 417 iqn~~~~-~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNP---GvW~~HCh~ 489 (536)
T PLN02792 417 FQNREKI-VQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNV---GMWNLRSQF 489 (536)
T ss_pred EECCCCC-CCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCC---EEEeeeEcc
Confidence 8886533 5699999999999985 222 235888999999999999999999999 999999984
No 37
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.74 E-value=9.2e-08 Score=85.37 Aligned_cols=79 Identities=22% Similarity=0.218 Sum_probs=71.4
Q ss_pred cceeEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCC-----------CceEEeEEEECCCceEEEEEEeCC
Q 008085 211 DTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYI-----------KSFQTDILLITPGQTTNILLKAKP 279 (578)
Q Consensus 211 ~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~-----------~P~~~~~l~l~pGeR~dvlv~~~~ 279 (578)
....+.++.|++++|+|.|.+.. .+.||+||+.|+|++.++... .|...|++.|.+|+++.+.+++++
T Consensus 32 ~~~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~ 110 (138)
T PF07731_consen 32 NTPVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADN 110 (138)
T ss_dssp TTSEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETS
T ss_pred CcceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeec
Confidence 44789999999999999998855 779999999999999999873 578899999999999999999997
Q ss_pred CCCCcceEEEeccc
Q 008085 280 SYPNATFLMSARPY 293 (578)
Q Consensus 280 ~~~~g~y~l~~~~~ 293 (578)
+ |.|.++||..
T Consensus 111 ~---G~w~~HCHi~ 121 (138)
T PF07731_consen 111 P---GPWLFHCHIL 121 (138)
T ss_dssp T---EEEEEEESSH
T ss_pred c---eEEEEEEchH
Confidence 7 9999999963
No 38
>PLN02191 L-ascorbate oxidase
Probab=98.69 E-value=1.4e-06 Score=95.60 Aligned_cols=227 Identities=11% Similarity=0.100 Sum_probs=131.8
Q ss_pred ceEEEecCCEEEEEEEecC-CCCeeEEeecccccCCcCCCCCCC----ccccccCCCCeEEEEEEECCCC-cceEEecCc
Q 008085 60 PRIVAREGDRLIIKVVNHV-PNNISIHWHGIRQLLSGWADGPAY----ITQCPIQTGQSYVYNFTISGQR-GTLFWHAHI 133 (578)
Q Consensus 60 P~i~~~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~~DG~~~----~tq~~i~PG~~~~Y~~~~~~~~-Gt~wYH~H~ 133 (578)
++|.|++|++.++|+.|.. .....+++.|....... .||.+- +....|+|||+++.-.++.+.+ +.||-+.-.
T Consensus 226 ~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~ 304 (574)
T PLN02191 226 QTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVE-ADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGV 304 (574)
T ss_pred eEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEE-cCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEc
Confidence 3799999999999999997 44566777776654332 799652 3345689999999999985545 589988643
Q ss_pred cccc----cceeeeEEEe-CCCCCCCCC------CCCCC-----ceeEE-eeee-cccchHHHHHH-hhcCC-CCCCCCc
Q 008085 134 SWLR----ATVYGPLVIF-PKRGVPYPF------PKPYK-----EVPII-FGEW-FNADTEAIINQ-SLQTG-AGPNVSD 193 (578)
Q Consensus 134 ~~~~----~Gl~G~liV~-~~~~~~~~~------~~~~~-----e~~l~-~~d~-~~~~~~~~~~~-~~~~g-~~~~~~~ 193 (578)
.... .++ +++-. .......+. +..+. ..... +... ........... ..... .......
T Consensus 305 ~~~~~~~~~~~--ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 382 (574)
T PLN02191 305 RGRKPNTTQAL--TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQNLIDGYT 382 (574)
T ss_pred cccCCCCCCce--EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEecccceeCCeE
Confidence 3211 233 33333 221110010 00000 00000 0000 00000000000 00000 0000112
Q ss_pred eEEEcCCCCCCCC------------------------------CC-------CCcceeEEEecCcEEEEEEEecC-----
Q 008085 194 AYTINGLPGPLYN------------------------------CS-------AKDTFKLKVKPGKTYLLRLINAA----- 231 (578)
Q Consensus 194 ~~liNG~~~~~~~------------------------------~~-------~~~~~~~~v~~G~~~rlRliNa~----- 231 (578)
.+.+||..+..-. +. ....-.+.++.|+++.+=|.|..
T Consensus 383 ~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~ 462 (574)
T PLN02191 383 KWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGV 462 (574)
T ss_pred EEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECCCcccCC
Confidence 4667776542000 00 00112456677999999998875
Q ss_pred CCCeEEEEEcCceEEEEEeCC-CC-----------CCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEecc
Q 008085 232 LNDELFFSIANHSVTVVDVDA-IY-----------IKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARP 292 (578)
Q Consensus 232 ~~~~~~~~i~gh~~~via~DG-~~-----------~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~ 292 (578)
....+.||+|||+|+|++..- .+ ..|...|++.+.++.=+-|-+++++| |.|.+|||-
T Consensus 463 ~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNP---G~Wl~HCHi 532 (574)
T PLN02191 463 VSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNP---GVWFFHCHI 532 (574)
T ss_pred CCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCC---EEEEEecCc
Confidence 245689999999999997643 21 25778899999999999999999999 999999995
No 39
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.68 E-value=1e-07 Score=82.00 Aligned_cols=91 Identities=19% Similarity=0.253 Sum_probs=68.3
Q ss_pred ceEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEe
Q 008085 453 TKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRA 532 (578)
Q Consensus 453 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~a 532 (578)
.+++.++.|+.|++.+.|.. ...+.+|.||...-- . .+ .|+... --.-.|.||+....+|++
T Consensus 25 GPtI~v~~Gd~v~i~~~N~l---~~~~siH~HG~~~~~--~---~~---~DG~~~-------~~~~~i~pG~~~~Y~~~~ 86 (117)
T PF07732_consen 25 GPTIRVREGDTVRITVTNNL---DEPTSIHWHGLHQPP--S---PW---MDGVPG-------VTQCPIAPGESFTYEFTA 86 (117)
T ss_dssp EEEEEEETTEEEEEEEEEES---SSGBSEEEETSBSTT--G---GG---GSGGTT-------TSGSSBSTTEEEEEEEEE
T ss_pred CCEEEEEcCCeeEEEEEecc---ccccccccceeeeee--e---ee---cCCccc-------ccceeEEeecceeeeEee
Confidence 45789999999999999964 478999999965310 0 00 000000 001348899999999999
Q ss_pred cC-ceeEEEEeechhhhhccceEEEEEecC
Q 008085 533 DN-PGVWFMHCHFEVHISWGLKMAWIVLNG 561 (578)
Q Consensus 533 dn-pG~w~~HCHil~H~d~GMm~~~~V~~~ 561 (578)
+. +|.|.||||...|...||...+.|++.
T Consensus 87 ~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 87 NQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 88 999999999999988999999999864
No 40
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.52 E-value=5.5e-06 Score=90.51 Aligned_cols=83 Identities=17% Similarity=0.117 Sum_probs=65.9
Q ss_pred ceEEEcCCCCCCCCCCCCcceeEEEecCcEEEEEEEecCCCCeEEEEEcCceEEE-EEeCCCCCCceEEeEEEECCCceE
Q 008085 193 DAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTV-VDVDAIYIKSFQTDILLITPGQTT 271 (578)
Q Consensus 193 ~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~v-ia~DG~~~~P~~~~~l~l~pGeR~ 271 (578)
..++|||+. ..|+|+++.|+++++++.|... ....+|.||..+.. -..||.. . ..-.|.||+++
T Consensus 49 ~vi~vNGq~---------PGPtI~~~~GD~v~V~V~N~L~-~~ttIHWHGl~q~~t~w~DGv~---~--TQcPI~PG~sf 113 (596)
T PLN00044 49 EAIGINGQF---------PGPALNVTTNWNLVVNVRNALD-EPLLLTWHGVQQRKSAWQDGVG---G--TNCAIPAGWNW 113 (596)
T ss_pred EEEEEcCcC---------CCCcEEEECCCEEEEEEEeCCC-CCccEEECCccCCCCccccCCC---C--CcCCcCCCCcE
Confidence 579999994 4699999999999999999985 44578888865433 2479963 2 34689999999
Q ss_pred EEEEEeCCCCCCcceEEEecc
Q 008085 272 NILLKAKPSYPNATFLMSARP 292 (578)
Q Consensus 272 dvlv~~~~~~~~g~y~l~~~~ 292 (578)
..-+++++.. |+||.|+|.
T Consensus 114 tY~F~~~dq~--GT~WYHsH~ 132 (596)
T PLN00044 114 TYQFQVKDQV--GSFFYAPST 132 (596)
T ss_pred EEEEEeCCCC--ceeEeeccc
Confidence 9999996433 999999984
No 41
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.47 E-value=5.3e-07 Score=76.16 Aligned_cols=70 Identities=13% Similarity=0.181 Sum_probs=46.6
Q ss_pred ceEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCCCCCCccccccCCCCeEEEEEEECCCCcceEEecCccccccc
Q 008085 60 PRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRAT 139 (578)
Q Consensus 60 P~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~G 139 (578)
..|++++|++|+|+++|.....+.+...++... ..|.||++.++.|.. .++|+|=|+|..++ .
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~-------------~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~--~- 97 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDLGIS-------------KVLPPGETATVTFTP-LKPGEYEFYCTMHP--N- 97 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEE-------------EEE-TT-EEEEEEEE--S-EEEEEB-SSS---T-
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCCceE-------------EEECCCCEEEEEEcC-CCCEEEEEEcCCCC--c-
Confidence 699999999999999999888766666664322 458999999999985 89999999999776 2
Q ss_pred eeeeEEE
Q 008085 140 VYGPLVI 146 (578)
Q Consensus 140 l~G~liV 146 (578)
|.|-|||
T Consensus 98 m~G~liV 104 (104)
T PF13473_consen 98 MKGTLIV 104 (104)
T ss_dssp TB-----
T ss_pred ceecccC
Confidence 7787775
No 42
>PRK02710 plastocyanin; Provisional
Probab=98.43 E-value=4.5e-06 Score=72.17 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=54.8
Q ss_pred CceEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCCCCCCccccccCCCCeEEEEEEECCCCcceEEecCcccccc
Q 008085 59 GPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRA 138 (578)
Q Consensus 59 gP~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~ 138 (578)
.+.|.+++||+ |+++|....++++.+.|..- . ..+...+.||++++|.|+. +|+|-|+|-.| ..+
T Consensus 46 P~~i~v~~Gd~--V~~~N~~~~~H~v~~~~~~~--------~-~~~~~~~~pg~t~~~tF~~---~G~y~y~C~~H-~~~ 110 (119)
T PRK02710 46 PSTLTIKAGDT--VKWVNNKLAPHNAVFDGAKE--------L-SHKDLAFAPGESWEETFSE---AGTYTYYCEPH-RGA 110 (119)
T ss_pred CCEEEEcCCCE--EEEEECCCCCceEEecCCcc--------c-cccccccCCCCEEEEEecC---CEEEEEEcCCC-ccC
Confidence 38999999998 46678877888887764321 0 0111347899999998873 89999999843 237
Q ss_pred ceeeeEEEe
Q 008085 139 TVYGPLVIF 147 (578)
Q Consensus 139 Gl~G~liV~ 147 (578)
||.|.|+|+
T Consensus 111 gM~G~I~V~ 119 (119)
T PRK02710 111 GMVGKITVE 119 (119)
T ss_pred CcEEEEEEC
Confidence 999999984
No 43
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.27 E-value=3.9e-06 Score=70.06 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=56.1
Q ss_pred CceEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCCCCCCc--cccccCCCCeEEEEEEECCCCcceEEecCcccc
Q 008085 59 GPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYI--TQCPIQTGQSYVYNFTISGQRGTLFWHAHISWL 136 (578)
Q Consensus 59 gP~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~--tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~ 136 (578)
...|++++||+| +++|....++++.++....+... .+..+.. +...+.||+++++.|.. +|+|.|||. ...
T Consensus 16 P~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~-~H~ 88 (99)
T TIGR02656 16 PAKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGV-KELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE-PHR 88 (99)
T ss_pred CCEEEECCCCEE--EEEECCCCCceEEECCCCCccch-hhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC-Ccc
Confidence 378999999985 56688777888877654322110 0111111 22357899999998873 999999998 333
Q ss_pred ccceeeeEEEe
Q 008085 137 RATVYGPLVIF 147 (578)
Q Consensus 137 ~~Gl~G~liV~ 147 (578)
.+||.|.|+|+
T Consensus 89 ~aGM~G~I~V~ 99 (99)
T TIGR02656 89 GAGMVGKITVE 99 (99)
T ss_pred ccCCEEEEEEC
Confidence 47999999984
No 44
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.16 E-value=0.00018 Score=78.01 Aligned_cols=261 Identities=13% Similarity=0.111 Sum_probs=145.8
Q ss_pred ceEEEEEEEEEEEee-----------cCc-e--eeEEEEEcCCCCC-----ceEEEecCCEEEEEEEecC-CCCeeEEee
Q 008085 28 ITRHYKFDIKMQNVT-----------RLC-H--TKSIITVNGQFPG-----PRIVAREGDRLIIKVVNHV-PNNISIHWH 87 (578)
Q Consensus 28 ~~~~~~l~~~~~~~~-----------~~g-~--~~~~~~~NG~~pg-----P~i~~~~Gd~v~v~l~N~l-~~~~siH~H 87 (578)
..++|.|.+++=.-+ ..| . .-+..++||+-.. +++.+++|++.++|+.|.. .....+..-
T Consensus 158 pd~E~~ill~dW~~~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~F~I~ 237 (563)
T KOG1263|consen 158 PDKEFTILLGDWYKNLNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNTSLNFSIA 237 (563)
T ss_pred CCceeEEEeEeeccccCHHHHHHhhccCCCCCCCCCceEECCCCCcccCceeEEEEcCCCEEEEEEEccccccceEEEEC
Confidence 567888888753211 111 1 2478899998521 6899999999999999985 444444444
Q ss_pred cccccCCcCCCCC---CCc-cccccCCCCeEEEEEEECCCCcceEEecCcccccc----ceeeeEEEeCCCCC-----CC
Q 008085 88 GIRQLLSGWADGP---AYI-TQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRA----TVYGPLVIFPKRGV-----PY 154 (578)
Q Consensus 88 G~~~~~~~~~DG~---~~~-tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~----Gl~G~liV~~~~~~-----~~ 154 (578)
|...... ..||. |.. ...-|.|||++++-.++.+.++.||.-........ =+.+..+++-.... ..
T Consensus 238 ~H~ltvV-e~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~ 316 (563)
T KOG1263|consen 238 NHQLTVV-EVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKL 316 (563)
T ss_pred CeEEEEE-EecceEEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccC
Confidence 4433322 26773 222 22458999999999999777889998876644321 23333333322110 00
Q ss_pred C----CCC-CCCceeEEeeee---c-----ccch-HHHHHHhh---------cCCC-CCCCCceEEEcCCCC--------
Q 008085 155 P----FPK-PYKEVPIIFGEW---F-----NADT-EAIINQSL---------QTGA-GPNVSDAYTINGLPG-------- 202 (578)
Q Consensus 155 ~----~~~-~~~e~~l~~~d~---~-----~~~~-~~~~~~~~---------~~g~-~~~~~~~~liNG~~~-------- 202 (578)
+ .+. .+....+-+..- . .... ........ .... ....-..+.||+..+
T Consensus 317 ~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~ 396 (563)
T KOG1263|consen 317 PIYPFLPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSL 396 (563)
T ss_pred cccccCCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchh
Confidence 0 000 000000000000 0 0000 00000000 0000 000112333444321
Q ss_pred -------------CCCCCCC----------CcceeEEEecCcEEEEEEEecCCCC--eEEEEEcCceEEEEEeCCCCC--
Q 008085 203 -------------PLYNCSA----------KDTFKLKVKPGKTYLLRLINAALND--ELFFSIANHSVTVVDVDAIYI-- 255 (578)
Q Consensus 203 -------------~~~~~~~----------~~~~~~~v~~G~~~rlRliNa~~~~--~~~~~i~gh~~~via~DG~~~-- 255 (578)
..+.|.. ...-.++++-+..+-+=+-|.+... .+.+|+|||.|.|++.+.+..
T Consensus 397 l~~~~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~ 476 (563)
T KOG1263|consen 397 LAAYFKNIPGYFTNDFPDKPPIKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDP 476 (563)
T ss_pred hhhhhccCCccccCccCCCCccccCCccccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCc
Confidence 0011111 1123467888888888888887443 456799999999999943221
Q ss_pred -----------CceEEeEEEECCCceEEEEEEeCCCCCCcceEEEecc
Q 008085 256 -----------KSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARP 292 (578)
Q Consensus 256 -----------~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~ 292 (578)
.|...+++.|.||.=.-|.+.++++ |.|.||||-
T Consensus 477 ~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNP---G~W~~HCHi 521 (563)
T KOG1263|consen 477 AKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNP---GVWLMHCHI 521 (563)
T ss_pred CcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCC---cEEEEEEec
Confidence 3667899999999999999999999 999999995
No 45
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=98.10 E-value=1.8e-05 Score=63.73 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=53.4
Q ss_pred CceEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCCCCCCccccccCCCCeEEEEEEECCCCcceEEecCcccccc
Q 008085 59 GPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRA 138 (578)
Q Consensus 59 gP~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~ 138 (578)
.+.|++++||+| +++|....++++++.........+.. ..+.||+++++.| .++|+|-|||-.|.
T Consensus 10 P~~i~v~~GdtV--t~~N~d~~~Hnv~~~~g~~~~~~~~~-------~~~~~g~~~~~tf---~~~G~y~y~C~~Hp--- 74 (83)
T TIGR02657 10 TPELHVKVGDTV--TWINREAMPHNVHFVAGVLGEAALKG-------PMMKKEQAYSLTF---TEAGTYDYHCTPHP--- 74 (83)
T ss_pred CCEEEECCCCEE--EEEECCCCCccEEecCCCCccccccc-------cccCCCCEEEEEC---CCCEEEEEEcCCCC---
Confidence 379999999996 56898888888887653211111111 2357888887766 46999999998876
Q ss_pred ceeeeEEEe
Q 008085 139 TVYGPLVIF 147 (578)
Q Consensus 139 Gl~G~liV~ 147 (578)
.|.|.++|+
T Consensus 75 ~M~G~v~V~ 83 (83)
T TIGR02657 75 FMRGKVVVE 83 (83)
T ss_pred CCeEEEEEC
Confidence 599999985
No 46
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.09 E-value=1.5e-05 Score=72.81 Aligned_cols=94 Identities=16% Similarity=0.234 Sum_probs=77.1
Q ss_pred ceEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEe
Q 008085 453 TKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRA 532 (578)
Q Consensus 453 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~a 532 (578)
..++.++.|++++|.|.|.+. ...+.|++.||+|+|++..+. ...|...|++.|.+|+.+.|.+++
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~--~~~~~~~i~gh~~~Via~DG~------------~v~p~~~~~l~l~~G~R~dvlv~~ 124 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGA--STSFNFSIDGHPMTVIAADGV------------PVEPYKVDTLVLAPGQRYDVLVTA 124 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESS--S-BEEEEETTBCEEEEEETTE------------EEEEEEESBEEE-TTEEEEEEEEE
T ss_pred cceEEEcCCcEEEEEEEeccC--CeeEEEEeeccceeEeeeccc------------cccccccceEEeeCCeEEEEEEEe
Confidence 568899999999999999764 468999999999999998532 122678899999999999999999
Q ss_pred cC-ceeEEEEe----echhhhhccceEEEEEec
Q 008085 533 DN-PGVWFMHC----HFEVHISWGLKMAWIVLN 560 (578)
Q Consensus 533 dn-pG~w~~HC----Hil~H~d~GMm~~~~V~~ 560 (578)
+. +|.|.++| +...+...|+...+.+-.
T Consensus 125 ~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 125 DQPPGNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp CSCSSEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred CCCCCeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 87 99999999 667788888888776543
No 47
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.09 E-value=1.1e-05 Score=67.29 Aligned_cols=83 Identities=18% Similarity=0.226 Sum_probs=54.6
Q ss_pred CceEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCC-CCCCccccccCCCCeEEEEEEECCCCcceEEecCccccc
Q 008085 59 GPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWAD-GPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLR 137 (578)
Q Consensus 59 gP~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~D-G~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~ 137 (578)
-..|.+++||+| ++.|....++++.+=--........+ ..+.-....+.||+++++.|+ .+|+|.|+|-. ...
T Consensus 16 P~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~P-H~~ 89 (99)
T PF00127_consen 16 PSEITVKAGDTV--TFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCTP-HYE 89 (99)
T ss_dssp SSEEEEETTEEE--EEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEETT-TGG
T ss_pred CCEEEECCCCEE--EEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcCC-Ccc
Confidence 379999999985 57777666777766431110000000 000001234789999999987 69999999984 444
Q ss_pred cceeeeEEEe
Q 008085 138 ATVYGPLVIF 147 (578)
Q Consensus 138 ~Gl~G~liV~ 147 (578)
+||.|.|+|+
T Consensus 90 ~GM~G~i~V~ 99 (99)
T PF00127_consen 90 AGMVGTIIVE 99 (99)
T ss_dssp TTSEEEEEEE
T ss_pred cCCEEEEEEC
Confidence 7999999985
No 48
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.01 E-value=2.6e-05 Score=84.00 Aligned_cols=100 Identities=17% Similarity=0.206 Sum_probs=70.9
Q ss_pred EEeecCcee--eEEEEEcCCCCCceEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCCCCCCccccccCCCCeEEE
Q 008085 39 QNVTRLCHT--KSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVY 116 (578)
Q Consensus 39 ~~~~~~g~~--~~~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~tq~~i~PG~~~~Y 116 (578)
..+.++|.. ..+.+..-.|--+.|+|++||.|+++|+|.....=.+ ||..++.. |+ +.-+.||++.+.
T Consensus 532 ~~v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----nI----~~dv~PG~t~sv 601 (635)
T PRK02888 532 SKVIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----GV----NMEVAPQATASV 601 (635)
T ss_pred cceEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----Cc----cEEEcCCceEEE
Confidence 345667743 3445555566556899999999999999954311111 66655432 11 134789999999
Q ss_pred EEEECCCCcceEEecCc--cccccceeeeEEEeCC
Q 008085 117 NFTISGQRGTLFWHAHI--SWLRATVYGPLVIFPK 149 (578)
Q Consensus 117 ~~~~~~~~Gt~wYH~H~--~~~~~Gl~G~liV~~~ 149 (578)
.|++ +++|+|||||.. +....+|.|-|+|+++
T Consensus 602 tF~a-dkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 602 TFTA-DKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred EEEc-CCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 9997 899999999986 3333799999999874
No 49
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.00 E-value=2.9e-05 Score=69.60 Aligned_cols=92 Identities=20% Similarity=0.331 Sum_probs=58.9
Q ss_pred eEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecC---C--cEEEE
Q 008085 454 KVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPS---G--GWVAI 528 (578)
Q Consensus 454 ~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~---~--~~~~i 528 (578)
+.+.++.|+.|++.+.|... +..|.|-||.+.-..- ..+..++. +..-..-.+|+ | ++..+
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~--~~~H~~~I~~~g~~~~------~~p~mdG~------~~~~~~~i~p~~~~g~~~~~~~ 117 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDT--DSGHNFDISKRGPPYP------YMPGMDGL------GFVAGTGFLPPPKSGKFGYTDF 117 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCC--CccccEEeecCCCccc------cccccCCC------CccccCcccCCCCCCccceeEE
Confidence 56889999999999999642 3567777664321000 00000000 11111112222 2 24678
Q ss_pred EEEecCceeEEEEeechhhhhccceEEEEEe
Q 008085 529 RFRADNPGVWFMHCHFEVHISWGLKMAWIVL 559 (578)
Q Consensus 529 rf~adnpG~w~~HCHil~H~d~GMm~~~~V~ 559 (578)
.|+++.+|.|.||||+..|...||...+.|+
T Consensus 118 tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 118 TYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 8888999999999999999999999999874
No 50
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.97 E-value=0.00016 Score=64.92 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=72.6
Q ss_pred EEEEEcCCCCC-ceEEEecCCEEEEEEEecCCCCeeEEeecccccC------CcCCCCCC----Ccc-----ccccCCCC
Q 008085 49 SIITVNGQFPG-PRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLL------SGWADGPA----YIT-----QCPIQTGQ 112 (578)
Q Consensus 49 ~~~~~NG~~pg-P~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~------~~~~DG~~----~~t-----q~~i~PG~ 112 (578)
+.+-|||+-.| |+|.+-.|-+|.|+|.|....++++-. +.... .-..||.. |.+ -..|.+|+
T Consensus 73 ~~fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~i--v~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gq 150 (195)
T TIGR03094 73 YPFNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKL--LPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGH 150 (195)
T ss_pred ccccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEE--ecCCCCCCCccccccCceeEeecccccCccccccccccc
Confidence 34778999888 899999999999999999877766555 21111 11245532 222 13466788
Q ss_pred eEEEEEEECCCCcceEEecCccccc-cceeeeEEEeCCCC
Q 008085 113 SYVYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRG 151 (578)
Q Consensus 113 ~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~ 151 (578)
+..-.|. +-++|+|||-|-.-+.. +||+|-+||...-.
T Consensus 151 s~sg~~~-~~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 151 SRSGWWN-DTSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred eeEEEec-cCCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 8665666 47999999999987766 99999999987654
No 51
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.79 E-value=0.00042 Score=63.70 Aligned_cols=103 Identities=18% Similarity=0.107 Sum_probs=74.1
Q ss_pred EEEEEcCCCCC-ceEEEecCCEEEEEEEecCCCCeeEEee--ccccc--CCcCCCCCC----C-----ccccccCCCCeE
Q 008085 49 SIITVNGQFPG-PRIVAREGDRLIIKVVNHVPNNISIHWH--GIRQL--LSGWADGPA----Y-----ITQCPIQTGQSY 114 (578)
Q Consensus 49 ~~~~~NG~~pg-P~i~~~~Gd~v~v~l~N~l~~~~siH~H--G~~~~--~~~~~DG~~----~-----~tq~~i~PG~~~ 114 (578)
..+.|||..-| ++|.+-.|-+|.|+++|....++++-.= +-.++ ..-..||.. + .....|.+|++.
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 47889998877 8999999999999999987655543322 22111 112345521 1 122468899999
Q ss_pred EEEEEECCCCcceEEecCccccc-cceeeeEEEeCCCCC
Q 008085 115 VYNFTISGQRGTLFWHAHISWLR-ATVYGPLVIFPKRGV 152 (578)
Q Consensus 115 ~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~ 152 (578)
.-.|.. -++|.|||=|-.-+.. +||++-|+|...-..
T Consensus 154 ~~~~~~-l~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt~ 191 (196)
T PF06525_consen 154 SGVYND-LPAGYYWLVCGIPGHAESGMWGVLIVSSNVTV 191 (196)
T ss_pred eEEEcc-CCCceEEEEccCCChhhcCCEEEEEEecCccc
Confidence 877763 6899999999998776 899999999976543
No 52
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.58 E-value=0.0003 Score=58.67 Aligned_cols=83 Identities=16% Similarity=0.206 Sum_probs=58.0
Q ss_pred eEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEec
Q 008085 454 KVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRAD 533 (578)
Q Consensus 454 ~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~ad 533 (578)
..+.++.|++|+|+ |.+ ...|-+.++...+..-.. ........+++.+.||....+.|..
T Consensus 17 ~~i~v~~G~~V~~~--N~~---~~~H~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~pG~t~~~tF~~- 76 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NNK---GGPHNVVFDEDAVPAGVK--------------ELAKSLSHKDLLNSPGESYEVTFST- 76 (99)
T ss_pred CEEEECCCCEEEEE--ECC---CCCceEEECCCCCccchh--------------hhcccccccccccCCCCEEEEEeCC-
Confidence 45789999999987 432 357887766432211100 0011123467888999998887764
Q ss_pred CceeEEEEeechhhhhccceEEEEEe
Q 008085 534 NPGVWFMHCHFEVHISWGLKMAWIVL 559 (578)
Q Consensus 534 npG~w~~HCHil~H~d~GMm~~~~V~ 559 (578)
||.|.|||- -|...||...+.|+
T Consensus 77 -~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 77 -PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred -CEEEEEEcC--CccccCCEEEEEEC
Confidence 999999998 89999999999874
No 53
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.44 E-value=0.00078 Score=58.09 Aligned_cols=75 Identities=15% Similarity=0.178 Sum_probs=55.4
Q ss_pred ceEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCCCCCCccccccCCCCeEEEEEEECCCCcceEEecCccccccc
Q 008085 60 PRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRAT 139 (578)
Q Consensus 60 P~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~G 139 (578)
-.|++++||+ |++.|.....+|++.-+...+ +|.- ...-.+|+++++.|. .+|+|-|+|-.|. .+|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~~~-----~g~~---~~~~~~~~s~~~Tfe---~~G~Y~Y~C~PH~-~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGMDP-----EGSG---TLKAGINESFTHTFE---TPGEYTYYCTPHP-GMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCCCc-----cccc---ccccCCCcceEEEec---ccceEEEEeccCC-CCC
Confidence 5999999999 789999888888887766511 2221 123455677777776 4999999997652 269
Q ss_pred eeeeEEEeC
Q 008085 140 VYGPLVIFP 148 (578)
Q Consensus 140 l~G~liV~~ 148 (578)
|.|.|+|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 54
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.37 E-value=0.0012 Score=56.35 Aligned_cols=76 Identities=11% Similarity=0.111 Sum_probs=47.9
Q ss_pred CceEEEecCCEEEEEEEecCCCCeeEEe-ecccccCCcCCCCCCCccccccCCCCeEEEEEEECCCCcceEEecCccccc
Q 008085 59 GPRIVAREGDRLIIKVVNHVPNNISIHW-HGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLR 137 (578)
Q Consensus 59 gP~i~~~~Gd~v~v~l~N~l~~~~siH~-HG~~~~~~~~~DG~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~ 137 (578)
...|.+++||+|+....|. ++++.+ .+.. -+|... ..-.+|+++++.| +.+|+|=|+|-.| ..
T Consensus 14 P~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~~------p~g~~~---~~s~~g~~~~~tF---~~~G~Y~Y~C~pH-~~ 77 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK---GHNVETIKGMI------PEGAEA---FKSKINEEYTVTV---TEEGVYGVKCTPH-YG 77 (116)
T ss_pred CCEEEECCCCEEEEEECCC---CeeEEEccCCC------cCCccc---ccCCCCCEEEEEe---CCCEEEEEEcCCC-cc
Confidence 3799999999965555543 455554 2211 122211 1123566655555 4699999999843 34
Q ss_pred cceeeeEEEeCCC
Q 008085 138 ATVYGPLVIFPKR 150 (578)
Q Consensus 138 ~Gl~G~liV~~~~ 150 (578)
+||.|.|+|.++.
T Consensus 78 ~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 78 MGMVALIQVGDPP 90 (116)
T ss_pred CCCEEEEEECCCC
Confidence 7999999998853
No 55
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.35 E-value=0.0009 Score=58.14 Aligned_cols=59 Identities=19% Similarity=0.434 Sum_probs=48.1
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEecC
Q 008085 455 VVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADN 534 (578)
Q Consensus 455 ~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~adn 534 (578)
.+.++.|+.|+|.+.|.+ +..|.+-++++.+ ...+++|+...++|.++.
T Consensus 62 ~I~VkaGD~Vtl~vtN~d---~~~H~f~i~~~gi----------------------------s~~I~pGet~TitF~adK 110 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKS---PISEGFSIDAYGI----------------------------SEVIKAGETKTISFKADK 110 (135)
T ss_pred EEEECCCCEEEEEEEeCC---CCccceEECCCCc----------------------------ceEECCCCeEEEEEECCC
Confidence 478999999999999864 3578777776521 234889999999999999
Q ss_pred ceeEEEEeec
Q 008085 535 PGVWFMHCHF 544 (578)
Q Consensus 535 pG~w~~HCHi 544 (578)
||.|.|||-.
T Consensus 111 pG~Y~y~C~~ 120 (135)
T TIGR03096 111 AGAFTIWCQL 120 (135)
T ss_pred CEEEEEeCCC
Confidence 9999999965
No 56
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.16 E-value=0.0027 Score=54.13 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=50.8
Q ss_pred CceEEEecCCEEEEEEEec-CCCCeeEEeecccccCCcCCCCCCCccccccCCCCeEEEEEEECCCCcceEEecCccccc
Q 008085 59 GPRIVAREGDRLIIKVVNH-VPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLR 137 (578)
Q Consensus 59 gP~i~~~~Gd~v~v~l~N~-l~~~~siH~HG~~~~~~~~~DG~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~ 137 (578)
...|.+++||+| +++|. ...++++..-+ ...| | .......||++|+|.|. ++|+|=|+|-.| ..
T Consensus 41 P~~ltV~~GdTV--tw~~~~d~~~HnV~s~~----~~~f-~----s~~~~~~~G~t~s~Tf~---~~G~Y~Y~C~pH-~~ 105 (115)
T TIGR03102 41 PPAIRVDPGTTV--VWEWTGEGGGHNVVSDG----DGDL-D----ESERVSEEGTTYEHTFE---EPGIYLYVCVPH-EA 105 (115)
T ss_pred CCEEEECCCCEE--EEEECCCCCCEEEEECC----CCCc-c----ccccccCCCCEEEEEec---CCcEEEEEccCC-CC
Confidence 378999999995 47754 35677765421 1111 1 11123578999999885 599999999866 33
Q ss_pred cceeeeEEEe
Q 008085 138 ATVYGPLVIF 147 (578)
Q Consensus 138 ~Gl~G~liV~ 147 (578)
.||.|.|+|+
T Consensus 106 ~gM~G~I~V~ 115 (115)
T TIGR03102 106 LGMKGAVVVE 115 (115)
T ss_pred CCCEEEEEEC
Confidence 6999999984
No 57
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.00 E-value=0.0043 Score=51.68 Aligned_cols=83 Identities=17% Similarity=0.251 Sum_probs=55.0
Q ss_pred eEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEec
Q 008085 454 KVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRAD 533 (578)
Q Consensus 454 ~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~ad 533 (578)
..+.++.|++|.|+..+ ...|.+++=- + ......+..... ..-.+..+.+|....+.|.
T Consensus 17 ~~i~V~~G~tV~~~n~~-----~~~Hnv~~~~--------~--~~~~~~~~~~~~----~~~~~~~~~~G~~~~~tF~-- 75 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNND-----SMPHNVVFVA--------D--GMPAGADSDYVP----PGDSSPLLAPGETYSVTFT-- 75 (99)
T ss_dssp SEEEEETTEEEEEEEES-----SSSBEEEEET--------T--SSHTTGGHCHHS----TTCEEEEBSTTEEEEEEEE--
T ss_pred CEEEECCCCEEEEEECC-----CCCceEEEec--------c--cccccccccccC----ccccceecCCCCEEEEEeC--
Confidence 46789999999998763 2567665422 1 110000000000 0115667888888777776
Q ss_pred CceeEEEEeechhhhhccceEEEEEe
Q 008085 534 NPGVWFMHCHFEVHISWGLKMAWIVL 559 (578)
Q Consensus 534 npG~w~~HCHil~H~d~GMm~~~~V~ 559 (578)
.+|.|.|+|- . |...||-..+.|+
T Consensus 76 ~~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 76 KPGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence 9999999999 5 9999999999885
No 58
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.83 E-value=0.0049 Score=66.93 Aligned_cols=79 Identities=15% Similarity=0.340 Sum_probs=60.1
Q ss_pred eEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEec
Q 008085 454 KVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRAD 533 (578)
Q Consensus 454 ~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~ad 533 (578)
..+.++.|+.|+|++.|.....+..|-|-|-++... +.+.||....+.|+++
T Consensus 555 ~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI~----------------------------~dv~PG~t~svtF~ad 606 (635)
T PRK02888 555 REFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGVN----------------------------MEVAPQATASVTFTAD 606 (635)
T ss_pred ceEEecCCCEEEEEEEeCCcccccccceeecccCcc----------------------------EEEcCCceEEEEEEcC
Confidence 347789999999999995433456787777554321 2467999999999999
Q ss_pred CceeEEEEeechhhh-hccceEEEEEec
Q 008085 534 NPGVWFMHCHFEVHI-SWGLKMAWIVLN 560 (578)
Q Consensus 534 npG~w~~HCHil~H~-d~GMm~~~~V~~ 560 (578)
.||.|.+||...-|. +.+|...+.|++
T Consensus 607 kPGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 607 KPGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred CCEEEEEECCcccccCcccceEEEEEEe
Confidence 999999999884433 348888888864
No 59
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.50 E-value=0.011 Score=49.74 Aligned_cols=67 Identities=15% Similarity=0.321 Sum_probs=42.2
Q ss_pred eEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEec
Q 008085 454 KVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRAD 533 (578)
Q Consensus 454 ~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~ad 533 (578)
..+.++.|+.+.+++.|.+. ..|-|.+.+. +. ...+++|+...+.|.++
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~---~~h~~~i~~~---------------------------~~-~~~l~~g~~~~~~f~~~ 83 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDS---RPHEFVIPDL---------------------------GI-SKVLPPGETATVTFTPL 83 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SS---S-EEEEEGGG---------------------------TE-EEEE-TT-EEEEEEEE-
T ss_pred CEEEEcCCCeEEEEEEECCC---CcEEEEECCC---------------------------ce-EEEECCCCEEEEEEcCC
Confidence 36789999999999999753 4455555441 12 25689999999999999
Q ss_pred CceeEEEEeechhhhhccc
Q 008085 534 NPGVWFMHCHFEVHISWGL 552 (578)
Q Consensus 534 npG~w~~HCHil~H~d~GM 552 (578)
.||.|-|||-+-.+ ..|.
T Consensus 84 ~~G~y~~~C~~~~~-m~G~ 101 (104)
T PF13473_consen 84 KPGEYEFYCTMHPN-MKGT 101 (104)
T ss_dssp S-EEEEEB-SSS-T-TB--
T ss_pred CCEEEEEEcCCCCc-ceec
Confidence 99999999995443 2444
No 60
>PRK02710 plastocyanin; Provisional
Probab=95.73 E-value=0.047 Score=47.08 Aligned_cols=73 Identities=15% Similarity=0.210 Sum_probs=51.2
Q ss_pred eEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEec
Q 008085 454 KVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRAD 533 (578)
Q Consensus 454 ~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~ad 533 (578)
..+.++.|++|+|+ |.+ ...|.+.+.+... + ......+.+|....+.|..
T Consensus 47 ~~i~v~~Gd~V~~~--N~~---~~~H~v~~~~~~~---------~---------------~~~~~~~~pg~t~~~tF~~- 96 (119)
T PRK02710 47 STLTIKAGDTVKWV--NNK---LAPHNAVFDGAKE---------L---------------SHKDLAFAPGESWEETFSE- 96 (119)
T ss_pred CEEEEcCCCEEEEE--ECC---CCCceEEecCCcc---------c---------------cccccccCCCCEEEEEecC-
Confidence 35788999999986 432 3578876543210 0 0112346788887777664
Q ss_pred CceeEEEEeechhhhhccceEEEEEe
Q 008085 534 NPGVWFMHCHFEVHISWGLKMAWIVL 559 (578)
Q Consensus 534 npG~w~~HCHil~H~d~GMm~~~~V~ 559 (578)
||.|.|+|= -|...||-..+.|+
T Consensus 97 -~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 97 -AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred -CEEEEEEcC--CCccCCcEEEEEEC
Confidence 999999997 89999999999884
No 61
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.59 E-value=0.13 Score=45.51 Aligned_cols=88 Identities=14% Similarity=0.113 Sum_probs=63.3
Q ss_pred CCCCceEEEecCCEEEEEEEecCC--CCee---------EEeecccccCCcCCCCCCCccccccCCCCeEEEEEEECCCC
Q 008085 56 QFPGPRIVAREGDRLIIKVVNHVP--NNIS---------IHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQR 124 (578)
Q Consensus 56 ~~pgP~i~~~~Gd~v~v~l~N~l~--~~~s---------iH~HG~~~~~~~~~DG~~~~tq~~i~PG~~~~Y~~~~~~~~ 124 (578)
.+++-.+.++.|++++..+.|.-. ...+ .-.|...... +++- ......|.||++-+..|.. ..+
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~D---me~d-~~~~v~L~PG~s~elvv~f-t~~ 133 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADD---MEHD-DPNTVTLAPGKSGELVVVF-TGA 133 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCc---cccC-CcceeEeCCCCcEEEEEEe-cCC
Confidence 357789999999999999999753 1111 1122333221 2221 1122568999999999998 789
Q ss_pred cceEEecCccccc-cceeeeEEEeC
Q 008085 125 GTLFWHAHISWLR-ATVYGPLVIFP 148 (578)
Q Consensus 125 Gt~wYH~H~~~~~-~Gl~G~liV~~ 148 (578)
|.|=.-|-..+.+ +||.|-|.|.+
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeCC
Confidence 9999999999988 89999998864
No 62
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=95.11 E-value=0.15 Score=43.52 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=29.9
Q ss_pred CCcEEEEEEEecCceeEEEEeechhhhhccceEEEEEecC
Q 008085 522 SGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVLNG 561 (578)
Q Consensus 522 ~~~~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~ 561 (578)
++... .++++.+|.|-|+|= .|...||-..+.|.++
T Consensus 54 ~g~~~--~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 54 INEEY--TVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred CCCEE--EEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 45544 455578999999998 9999999999999875
No 63
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=94.64 E-value=0.24 Score=42.79 Aligned_cols=73 Identities=12% Similarity=0.148 Sum_probs=50.1
Q ss_pred CceEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCCCCCCccccccCCCCeEEEEEEECCCCcceEEecCc-ccc-
Q 008085 59 GPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHI-SWL- 136 (578)
Q Consensus 59 gP~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~-~~~- 136 (578)
.+.|.+.+|+.|++++++. +.-+++...++.. +.-+-||......|++ +++|+|++.|.. .+.
T Consensus 45 ~~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~-------------k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~g 109 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE-DVIHSFWIPELGI-------------KMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAG 109 (120)
T ss_dssp SSEEEEETTSEEEEEEEES-SS-EEEEETTCTE-------------EEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTT
T ss_pred cceecccccceEeEEEEcC-CccccccccccCc-------------ccccccccceeeeeee-ccCCcEEEcCccccCcC
Confidence 4799999999999999995 3333333222221 1345789999999997 899999999985 232
Q ss_pred ccceeeeEEE
Q 008085 137 RATVYGPLVI 146 (578)
Q Consensus 137 ~~Gl~G~liV 146 (578)
.+-|.|-++|
T Consensus 110 H~~M~~~v~V 119 (120)
T PF00116_consen 110 HSFMPGKVIV 119 (120)
T ss_dssp GGG-EEEEEE
T ss_pred cCCCeEEEEE
Confidence 3667777765
No 64
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=94.48 E-value=0.15 Score=47.18 Aligned_cols=88 Identities=13% Similarity=0.175 Sum_probs=59.4
Q ss_pred ceEEEcCCCCCCCCCCCCcceeEEEecCcEEEEEEEecCCCCeEEEEEc--Cc---eEEEEEeCCCCC-----CceEEeE
Q 008085 193 DAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIA--NH---SVTVVDVDAIYI-----KSFQTDI 262 (578)
Q Consensus 193 ~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~--gh---~~~via~DG~~~-----~P~~~~~ 262 (578)
+.+-+||... ...+|.+.+|-++.++++|.+...+ .|-+- +- ..-.++.||..+ .+.....
T Consensus 74 ~~~nfnGts~--------G~m~i~VPAGw~V~i~f~N~~~l~H-nl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~ 144 (196)
T PF06525_consen 74 NPFNFNGTSN--------GQMTIYVPAGWNVQITFTNQESLPH-NLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTS 144 (196)
T ss_pred CceeeecccC--------CcEEEEEcCCCEEEEEEEcCCCCCe-eEEEEeCCCCCCCccccCCCCceeeeccCCCCcccc
Confidence 3677888754 4589999999999999999985543 44442 11 233566777554 1222223
Q ss_pred EEECCCceEEEEEEeCCCCCCcceEEEecc
Q 008085 263 LLITPGQTTNILLKAKPSYPNATFLMSARP 292 (578)
Q Consensus 263 l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~ 292 (578)
--|.+||++..++....+ |.|||.|.-
T Consensus 145 ~GI~~G~s~~~~~~~l~a---G~YwlvC~i 171 (196)
T PF06525_consen 145 NGISSGQSASGVYNDLPA---GYYWLVCGI 171 (196)
T ss_pred CCccCCceeeEEEccCCC---ceEEEEccC
Confidence 356799999987754444 999999963
No 65
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=93.75 E-value=0.33 Score=41.58 Aligned_cols=87 Identities=14% Similarity=0.086 Sum_probs=56.6
Q ss_pred CceEEEecC-CEEEEEEEecCCCCeeEEeecccccCCcCCC---------C-----CCC-----c-cccccCCCCeEEEE
Q 008085 59 GPRIVAREG-DRLIIKVVNHVPNNISIHWHGIRQLLSGWAD---------G-----PAY-----I-TQCPIQTGQSYVYN 117 (578)
Q Consensus 59 gP~i~~~~G-d~v~v~l~N~l~~~~siH~HG~~~~~~~~~D---------G-----~~~-----~-tq~~i~PG~~~~Y~ 117 (578)
=..|.|.++ ..|.|+|+|....+-..--|.+-.....-++ | +|. + .-.-|.|||+.+..
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 368999984 7899999998654433333432111110011 1 221 0 01247899999999
Q ss_pred EEECC-CCcc-eEEecCccccccceeeeEE
Q 008085 118 FTISG-QRGT-LFWHAHISWLRATVYGPLV 145 (578)
Q Consensus 118 ~~~~~-~~Gt-~wYH~H~~~~~~Gl~G~li 145 (578)
|+++. ++|+ |-|-|-.-+..+.|.|.+.
T Consensus 95 F~~~~l~~g~~Y~f~CSFPGH~~~MkG~l~ 124 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCSFPGHWAMMRGTVK 124 (125)
T ss_pred EECCCCCCCCcceEEEcCCCcHHhceEEEe
Confidence 99853 5786 9999999887788998875
No 66
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=93.69 E-value=0.53 Score=37.62 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=45.5
Q ss_pred eEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEec
Q 008085 454 KVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRAD 533 (578)
Q Consensus 454 ~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~ad 533 (578)
..+.+..|++|.|+ |.. ...|-++.+.-.+ +.. .+. .-.+.++.... ++++
T Consensus 11 ~~i~v~~GdtVt~~--N~d---~~~Hnv~~~~g~~-------~~~--------------~~~-~~~~~~g~~~~--~tf~ 61 (83)
T TIGR02657 11 PELHVKVGDTVTWI--NRE---AMPHNVHFVAGVL-------GEA--------------ALK-GPMMKKEQAYS--LTFT 61 (83)
T ss_pred CEEEECCCCEEEEE--ECC---CCCccEEecCCCC-------ccc--------------ccc-ccccCCCCEEE--EECC
Confidence 45788999999995 432 3578887653211 000 011 11234555544 5668
Q ss_pred CceeEEEEeechhhhhccceEEEEEe
Q 008085 534 NPGVWFMHCHFEVHISWGLKMAWIVL 559 (578)
Q Consensus 534 npG~w~~HCHil~H~d~GMm~~~~V~ 559 (578)
.||.|.|||=+ |- .|-..+.|+
T Consensus 62 ~~G~y~y~C~~--Hp--~M~G~v~V~ 83 (83)
T TIGR02657 62 EAGTYDYHCTP--HP--FMRGKVVVE 83 (83)
T ss_pred CCEEEEEEcCC--CC--CCeEEEEEC
Confidence 89999999986 44 588888774
No 67
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=93.49 E-value=0.13 Score=45.43 Aligned_cols=93 Identities=13% Similarity=0.106 Sum_probs=62.4
Q ss_pred EEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEecCc
Q 008085 456 VVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNP 535 (578)
Q Consensus 456 ~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~adnp 535 (578)
..++-|++++.++.|.+. --|=|=+- ++.... +.+.-.. ...-..-....++.+.||....+-+.+.++
T Consensus 65 ~~v~aG~tv~~v~~n~~e---l~hef~~~---~~~~~~--~~~~~~~---~~~Dme~d~~~~v~L~PG~s~elvv~ft~~ 133 (158)
T COG4454 65 FEVKAGETVRFVLKNEGE---LKHEFTMD---APDKNL--EHVTHMI---LADDMEHDDPNTVTLAPGKSGELVVVFTGA 133 (158)
T ss_pred ccccCCcEEeeeecCccc---ceEEEecc---Cccccc--hhHHHhh---hCCccccCCcceeEeCCCCcEEEEEEecCC
Confidence 466789999999998653 33433332 111111 1000000 000011124568999999999999999999
Q ss_pred eeEEEEeechhhhhccceEEEEEe
Q 008085 536 GVWFMHCHFEVHISWGLKMAWIVL 559 (578)
Q Consensus 536 G~w~~HCHil~H~d~GMm~~~~V~ 559 (578)
|.|-|-|-|.+|-+.||-..+.|.
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeC
Confidence 999999999999999999999884
No 68
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=92.82 E-value=1.2 Score=46.08 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=54.0
Q ss_pred CCCCceEEEecCCEEEEEEEecCCCCeeEEee-cccccCCcCCCCCCCccccccCCCCeEEEEEEECCCCcceEEecCcc
Q 008085 56 QFPGPRIVAREGDRLIIKVVNHVPNNISIHWH-GIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHIS 134 (578)
Q Consensus 56 ~~pgP~i~~~~Gd~v~v~l~N~l~~~~siH~H-G~~~~~~~~~DG~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~ 134 (578)
.+--..+.+..|+ +++.|+|....++..-.- |..+.. ..-.|.||.+.++.+++ .+|+|=|+|-.+
T Consensus 40 ~c~p~~~tVpAG~-~~f~V~N~~~~~~Efe~~~~~~vv~----------e~EnIaPG~s~~l~~~L--~pGtY~~~C~~~ 106 (375)
T PRK10378 40 QCEPMTLTVNAGK-TQFIIQNHSQKALEWEILKGVMVVE----------ERENIAPGFSQKMTANL--QPGEYDMTCGLL 106 (375)
T ss_pred ccccCceeeCCCC-EEEEEEeCCCCcceEEeeccccccc----------cccccCCCCceEEEEec--CCceEEeecCcC
Confidence 3444789999996 899999998666442111 111100 11468999999988776 699999999432
Q ss_pred ccccceeeeEEEeCCC
Q 008085 135 WLRATVYGPLVIFPKR 150 (578)
Q Consensus 135 ~~~~Gl~G~liV~~~~ 150 (578)
..+.|.|+|.+..
T Consensus 107 ---~~~~g~l~Vtg~~ 119 (375)
T PRK10378 107 ---TNPKGKLIVKGEA 119 (375)
T ss_pred ---CCCCceEEEeCCC
Confidence 3458999998653
No 69
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=91.83 E-value=1.1 Score=38.28 Aligned_cols=74 Identities=20% Similarity=0.309 Sum_probs=48.3
Q ss_pred eEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEec
Q 008085 454 KVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRAD 533 (578)
Q Consensus 454 ~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~ad 533 (578)
..+.++.|++|.|+..+. ...|-.. ..+.+.|+. ......+|....+.| +
T Consensus 42 ~~ltV~~GdTVtw~~~~d----~~~HnV~---------s~~~~~f~s---------------~~~~~~~G~t~s~Tf--~ 91 (115)
T TIGR03102 42 PAIRVDPGTTVVWEWTGE----GGGHNVV---------SDGDGDLDE---------------SERVSEEGTTYEHTF--E 91 (115)
T ss_pred CEEEECCCCEEEEEECCC----CCCEEEE---------ECCCCCccc---------------cccccCCCCEEEEEe--c
Confidence 357899999999986432 2345543 222222221 111234566655555 7
Q ss_pred CceeEEEEeechhhhhccceEEEEEe
Q 008085 534 NPGVWFMHCHFEVHISWGLKMAWIVL 559 (578)
Q Consensus 534 npG~w~~HCHil~H~d~GMm~~~~V~ 559 (578)
.||.|-|+|= .|...||-..+.|+
T Consensus 92 ~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 92 EPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred CCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 8999999998 89999999999884
No 70
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=91.46 E-value=2.4 Score=36.51 Aligned_cols=74 Identities=18% Similarity=0.268 Sum_probs=54.3
Q ss_pred ceEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEe
Q 008085 453 TKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRA 532 (578)
Q Consensus 453 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~a 532 (578)
.+.+.++.|+.|++.+.+. +..|-|.+-.....+ .+.||....+.|++
T Consensus 45 ~~~l~lp~g~~v~~~ltS~----DViHsf~ip~~~~k~----------------------------d~~PG~~~~~~~~~ 92 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE----DVIHSFWIPELGIKM----------------------------DAIPGRTNSVTFTP 92 (120)
T ss_dssp SSEEEEETTSEEEEEEEES----SS-EEEEETTCTEEE----------------------------EEBTTCEEEEEEEE
T ss_pred cceecccccceEeEEEEcC----CccccccccccCccc----------------------------ccccccceeeeeee
Confidence 4568899999999999985 367888776654322 36789999999999
Q ss_pred cCceeEEEEeechhhh-hccceEEEEE
Q 008085 533 DNPGVWFMHCHFEVHI-SWGLKMAWIV 558 (578)
Q Consensus 533 dnpG~w~~HCHil~H~-d~GMm~~~~V 558 (578)
+.||.|-..|..+=.. +.-|...+.|
T Consensus 93 ~~~G~y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 93 DKPGTYYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp SSSEEEEEEE-SSSSTTGGG-EEEEEE
T ss_pred ccCCcEEEcCccccCcCcCCCeEEEEE
Confidence 9999999999886533 4456566655
No 71
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=90.52 E-value=1.4 Score=41.84 Aligned_cols=76 Identities=14% Similarity=0.148 Sum_probs=56.7
Q ss_pred ceEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCCCCCCccccccCCCCeEEEEEEECCCCcceEEecCc-ccc-c
Q 008085 60 PRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHI-SWL-R 137 (578)
Q Consensus 60 P~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~-~~~-~ 137 (578)
..|.+..|+.|++++++.. .+ ||..++.- |+ +.-.-||..-+..|++ +++|+|...|.. .|. .
T Consensus 117 ~~l~vp~g~~v~~~~ts~D----V~--Hsf~ip~~----~~----k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD----VI--HSFWVPEL----GG----KIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc----hh--hccccccc----Cc----eEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 6899999999999999853 12 66665432 21 1345689998989986 899999999985 233 3
Q ss_pred cceeeeEEEeCCC
Q 008085 138 ATVYGPLVIFPKR 150 (578)
Q Consensus 138 ~Gl~G~liV~~~~ 150 (578)
+.|.+-++|.+++
T Consensus 182 ~~M~~~v~v~~~~ 194 (201)
T TIGR02866 182 SLMLFKVVVVERE 194 (201)
T ss_pred cCCeEEEEEECHH
Confidence 7899999998764
No 72
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=89.06 E-value=1.8 Score=41.13 Aligned_cols=76 Identities=20% Similarity=0.320 Sum_probs=55.6
Q ss_pred eEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEec
Q 008085 454 KVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRAD 533 (578)
Q Consensus 454 ~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~ad 533 (578)
+.+.++.|+.|++.+.+.+ ..|.|.+-+... -..+-||....+.|+++
T Consensus 117 ~~l~vp~g~~v~~~~ts~D----V~Hsf~ip~~~~----------------------------k~da~PG~~~~~~~~~~ 164 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD----VIHSFWVPELGG----------------------------KIDAIPGQYNALWFNAD 164 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc----hhhcccccccCc----------------------------eEEecCCcEEEEEEEeC
Confidence 4678899999999999853 445544433211 12355888999999999
Q ss_pred CceeEEEEeechhhh-hccceEEEEEecC
Q 008085 534 NPGVWFMHCHFEVHI-SWGLKMAWIVLNG 561 (578)
Q Consensus 534 npG~w~~HCHil~H~-d~GMm~~~~V~~~ 561 (578)
.||.|...|-..-.. +..|...++|.++
T Consensus 165 ~~G~y~~~c~e~cG~~h~~M~~~v~v~~~ 193 (201)
T TIGR02866 165 EPGVYYGYCAELCGAGHSLMLFKVVVVER 193 (201)
T ss_pred CCEEEEEEehhhCCcCccCCeEEEEEECH
Confidence 999999999983322 3788888888764
No 73
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=86.16 E-value=5.4 Score=34.27 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=50.1
Q ss_pred eeEEEec-CcEEEEEEEecCCCCeEEEEEcCceEEE--------EE-------eCCCCCCc---e-EEeEEEECCCceEE
Q 008085 213 FKLKVKP-GKTYLLRLINAALNDELFFSIANHSVTV--------VD-------VDAIYIKS---F-QTDILLITPGQTTN 272 (578)
Q Consensus 213 ~~~~v~~-G~~~rlRliNa~~~~~~~~~i~gh~~~v--------ia-------~DG~~~~P---~-~~~~l~l~pGeR~d 272 (578)
..|+|++ ++.+.+.|-|.|...- ..-||++-+ |+ .|-+++.+ . ...+=+|++||..+
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk---~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~s 92 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPK---AVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTS 92 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCch---hccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEE
Confidence 5689998 4889999999985431 122343322 22 23445533 2 33466999999999
Q ss_pred EEEEeCCCCCCcceEEEec
Q 008085 273 ILLKAKPSYPNATFLMSAR 291 (578)
Q Consensus 273 vlv~~~~~~~~g~y~l~~~ 291 (578)
|-++++.-..|++|.+.|.
T Consensus 93 vtF~~~~l~~g~~Y~f~CS 111 (125)
T TIGR02695 93 VTFDVSKLSAGEDYTFFCS 111 (125)
T ss_pred EEEECCCCCCCCcceEEEc
Confidence 9999875222357999997
No 74
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=84.55 E-value=12 Score=34.27 Aligned_cols=100 Identities=18% Similarity=0.236 Sum_probs=58.8
Q ss_pred CceEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCC-CCCC--CCCCCCCCC--CCCCcceeeeecCCcEE
Q 008085 452 GTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFG-NYDP--SKDRKNFNL--IDPVERNTVGVPSGGWV 526 (578)
Q Consensus 452 ~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g-~~~~--~~~~~~~~~--~~p~~rDTv~v~~~~~~ 526 (578)
+...+-++.|-.|.+++.|... ..| .+-|+..+.. ...+ ..|.+..+. ..+..-..=-+..|...
T Consensus 83 G~mtIyiPaGw~V~V~f~N~e~---~pH-------nl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~ 152 (195)
T TIGR03094 83 GAMTIYLPAGWNVYVTFTNYES---LPH-------NLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSR 152 (195)
T ss_pred CceEEEEeCCCEEEEEEEcCCC---CCc-------cEEEecCCCCCCCccccccCceeEeecccccCcccccccccccee
Confidence 3567888999999999999642 443 4555543311 0000 001111100 00000001112244455
Q ss_pred EEEEEecCceeEEEEeechhhhhccceEEEEEecC
Q 008085 527 AIRFRADNPGVWFMHCHFEVHISWGLKMAWIVLNG 561 (578)
Q Consensus 527 ~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~ 561 (578)
..-+..-.||.|-+=|-+.-|.+.||-..+.|-..
T Consensus 153 sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 153 SGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred EEEeccCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 56666678999999999999999999999988654
No 75
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=84.45 E-value=5.5 Score=34.58 Aligned_cols=74 Identities=23% Similarity=0.270 Sum_probs=47.5
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEecC
Q 008085 455 VVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADN 534 (578)
Q Consensus 455 ~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~adn 534 (578)
.+.++.|++|+|+... ...|-.+.=+-. ++...+++....+.....-| +-
T Consensus 55 ~v~v~pGDTVtw~~~d-----~~~Hnv~~~~~~-----------------------~~~g~~~~~~~~~~s~~~Tf--e~ 104 (128)
T COG3794 55 EVTVKPGDTVTWVNTD-----SVGHNVTAVGGM-----------------------DPEGSGTLKAGINESFTHTF--ET 104 (128)
T ss_pred EEEECCCCEEEEEECC-----CCCceEEEeCCC-----------------------CcccccccccCCCcceEEEe--cc
Confidence 4688899999998543 236765533221 11122333334445555544 45
Q ss_pred ceeEEEEeechhhhhccceEEEEEec
Q 008085 535 PGVWFMHCHFEVHISWGLKMAWIVLN 560 (578)
Q Consensus 535 pG~w~~HCHil~H~d~GMm~~~~V~~ 560 (578)
||.|.|.|- .|.-+||-..+.|++
T Consensus 105 ~G~Y~Y~C~--PH~~~gM~G~IvV~~ 128 (128)
T COG3794 105 PGEYTYYCT--PHPGMGMKGKIVVGE 128 (128)
T ss_pred cceEEEEec--cCCCCCcEEEEEeCC
Confidence 999999995 688999999998853
No 76
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=84.11 E-value=3.9 Score=39.94 Aligned_cols=77 Identities=12% Similarity=0.023 Sum_probs=56.9
Q ss_pred ceEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCCCCCCccccccCCCCeEEEEEEECCCCcceEEecCc-cccc-
Q 008085 60 PRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHI-SWLR- 137 (578)
Q Consensus 60 P~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~-~~~~- 137 (578)
..|.+..|.+|+++++-. +.- ||..++.-+ .+.-.-||...+..+++ +++|+|.-+|+. .|..
T Consensus 137 n~l~lPv~~~V~f~ltS~-DVi-----HsF~IP~l~--------~k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-DVI-----HSFWIPQLG--------GKIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGH 201 (247)
T ss_pred ceEEEeCCCeEEEEEEec-hhc-----eeEEecCCC--------ceeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCc
Confidence 899999999999998765 333 444443221 01335678999999996 999999999986 3333
Q ss_pred cceeeeEEEeCCCC
Q 008085 138 ATVYGPLVIFPKRG 151 (578)
Q Consensus 138 ~Gl~G~liV~~~~~ 151 (578)
+.|.|.++|.++++
T Consensus 202 ~~M~~~v~vvs~~~ 215 (247)
T COG1622 202 SFMRFKVIVVSQED 215 (247)
T ss_pred ccceEEEEEEcHHH
Confidence 78999999998864
No 77
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=82.72 E-value=1.8 Score=44.93 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=51.5
Q ss_pred ceEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCCCCCCccccccCCCCeEEEEEEECCCCcceEEecCcc--ccc
Q 008085 60 PRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHIS--WLR 137 (578)
Q Consensus 60 P~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~--~~~ 137 (578)
-++.|++||.|++.++|-....-.+| |.-.+. -|+- ..+.|-++-.|.|.+ +.+|.+||.|--. ...
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~th--gfv~p~----~~v~----~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh 626 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLTH--GFVIPN----YGVN----MEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALH 626 (637)
T ss_pred EEEEEecCcEEEEEecccceeccccc--eeeecc----CceE----EEEccCCceEEEEEc-cCCeeeehhhhhHHHHHH
Confidence 47788899998888888765443333 333221 1221 357888999999997 8999999987532 222
Q ss_pred cceeeeEEEe
Q 008085 138 ATVYGPLVIF 147 (578)
Q Consensus 138 ~Gl~G~liV~ 147 (578)
+-|+|-++|+
T Consensus 627 ~em~~rmlve 636 (637)
T COG4263 627 MEMAGRMLVE 636 (637)
T ss_pred Hhhccceeec
Confidence 5567777775
No 78
>COG1470 Predicted membrane protein [Function unknown]
Probab=82.33 E-value=73 Score=33.86 Aligned_cols=182 Identities=11% Similarity=0.210 Sum_probs=103.9
Q ss_pred EEEecCCE--EEEEEEecCC--CCeeEEeecccc-cCCcCCCCCCCccccccCCCCeEEEEEEECCCCcceEEecCcccc
Q 008085 62 IVAREGDR--LIIKVVNHVP--NNISIHWHGIRQ-LLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWL 136 (578)
Q Consensus 62 i~~~~Gd~--v~v~l~N~l~--~~~siH~HG~~~-~~~~~~DG~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~ 136 (578)
+.+.++++ +.|++.|.-. +...+-.-|+.- ....+.+|---++...+.||++.+....+- ++= ..
T Consensus 278 ~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~-ps~---------na 347 (513)
T COG1470 278 LEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVY-PSL---------NA 347 (513)
T ss_pred eEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEe-cCC---------CC
Confidence 55566665 6677788874 445566666542 112334666667888899999988888772 100 00
Q ss_pred ccceeeeEEEeCCCCCCCCCCCCCCceeEEeeeecccchHHHHHHhhcCCCCCCCCceEEEcCCCCCCCCCCCCcceeEE
Q 008085 137 RATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLK 216 (578)
Q Consensus 137 ~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~ 216 (578)
..|.|-..|+--... . .-++.++.+.- .|.. ....-+-||. ..++
T Consensus 348 ~pG~Ynv~I~A~s~s-~-----v~~e~~lki~~---------------~g~~--~~~v~l~~g~------------~~lt 392 (513)
T COG1470 348 TPGTYNVTITASSSS-G-----VTRELPLKIKN---------------TGSY--NELVKLDNGP------------YRLT 392 (513)
T ss_pred CCCceeEEEEEeccc-c-----ceeeeeEEEEe---------------cccc--ceeEEccCCc------------EEEE
Confidence 134444444432221 1 13344444431 1110 0122333554 4577
Q ss_pred EecCc--EEEEEEEecCCCC--eEEEEEcCceEEEEEeCCCCCCceEEeEEEECCCce--EEEEEEeCCCCCCcceEEEe
Q 008085 217 VKPGK--TYLLRLINAALND--ELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQT--TNILLKAKPSYPNATFLMSA 290 (578)
Q Consensus 217 v~~G~--~~rlRliNa~~~~--~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGeR--~dvlv~~~~~~~~g~y~l~~ 290 (578)
+.+|+ ..+++|-|.|+.. .+.+.+++-+-|-+.+|+.. .+ .|.|||| +++-++++.....|+|.+..
T Consensus 393 ~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~-----I~--sL~pge~~tV~ltI~vP~~a~aGdY~i~i 465 (513)
T COG1470 393 ITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDEST-----IP--SLEPGESKTVSLTITVPEDAGAGDYRITI 465 (513)
T ss_pred ecCCccceEEEEEEecCCCccceeeEEecCCccceEEECccc-----cc--ccCCCCcceEEEEEEcCCCCCCCcEEEEE
Confidence 88884 7799999999654 45677777666777878642 33 3455655 55555666544458998887
Q ss_pred ccccC
Q 008085 291 RPYAT 295 (578)
Q Consensus 291 ~~~~~ 295 (578)
....+
T Consensus 466 ~~ksD 470 (513)
T COG1470 466 TAKSD 470 (513)
T ss_pred EEeec
Confidence 65433
No 79
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=81.30 E-value=16 Score=29.13 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=34.5
Q ss_pred EEEEEEecCCCCeEEEEEc-CceEE--EEEeCCCCC----C----ceEEeEEEECCCceEEEEEEeCCCCC-CcceEEEe
Q 008085 223 YLLRLINAALNDELFFSIA-NHSVT--VVDVDAIYI----K----SFQTDILLITPGQTTNILLKAKPSYP-NATFLMSA 290 (578)
Q Consensus 223 ~rlRliNa~~~~~~~~~i~-gh~~~--via~DG~~~----~----P~~~~~l~l~pGeR~dvlv~~~~~~~-~g~y~l~~ 290 (578)
..|++.|.+. ..+.|.+. |+.+. |...+|..+ + -+......|.|||...+-.+.+.... .|.|.+.+
T Consensus 4 ~~l~v~N~s~-~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 4 FTLTVTNNSD-EPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEEEEEE-SS-S-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEEEEEeCCC-CeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 4577777774 34456654 44333 333455544 1 23456889999999999999887531 38898764
No 80
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=77.05 E-value=9.4 Score=37.31 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=55.9
Q ss_pred ceEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEe
Q 008085 453 TKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRA 532 (578)
Q Consensus 453 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~a 532 (578)
.+.+.++.|+.|++.+...+ ..|-|.+-+-.+ -+.+-||-.....+++
T Consensus 136 ~n~l~lPv~~~V~f~ltS~D----ViHsF~IP~l~~----------------------------k~d~iPG~~~~~~~~~ 183 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSAD----VIHSFWIPQLGG----------------------------KIDAIPGMTTELWLTA 183 (247)
T ss_pred cceEEEeCCCeEEEEEEech----hceeEEecCCCc----------------------------eeeecCCceEEEEEec
Confidence 34678899999999998743 455544444322 2335577888899999
Q ss_pred cCceeEEEEeechh-hhhccceEEEEEecCC
Q 008085 533 DNPGVWFMHCHFEV-HISWGLKMAWIVLNGN 562 (578)
Q Consensus 533 dnpG~w~~HCHil~-H~d~GMm~~~~V~~~~ 562 (578)
+.||.|-.+|+.+- .-+..|-..+.|++.+
T Consensus 184 ~~~G~Y~g~Cae~CG~gH~~M~~~v~vvs~~ 214 (247)
T COG1622 184 NKPGTYRGICAEYCGPGHSFMRFKVIVVSQE 214 (247)
T ss_pred CCCeEEEEEcHhhcCCCcccceEEEEEEcHH
Confidence 99999999999976 3345666677776544
No 81
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=73.32 E-value=21 Score=28.45 Aligned_cols=58 Identities=19% Similarity=0.321 Sum_probs=30.5
Q ss_pred eEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCCCCCC---ccccccCCCCeEEEEEEECCC---CcceEE
Q 008085 61 RIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAY---ITQCPIQTGQSYVYNFTISGQ---RGTLFW 129 (578)
Q Consensus 61 ~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~---~tq~~i~PG~~~~Y~~~~~~~---~Gt~wY 129 (578)
+|+..-|++..+.|.|...+. + -.|++|-.. +.+..|.||++.+|++..+.. +|+|..
T Consensus 17 ~l~f~sgq~~D~~v~d~~g~~---------v--wrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDKEGKE---------V--WRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEESSS--EEEEEE-TT--E---------E--EETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEeCCCCEEEEEEECCCCCE---------E--EEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 555555555555555442221 1 147888653 344679999999999999733 688864
No 82
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=70.24 E-value=32 Score=27.67 Aligned_cols=64 Identities=13% Similarity=0.176 Sum_probs=42.4
Q ss_pred CCceEEEe---cCCEEEEEEEecCCCCeeEEeecccccCCcCCCCCCCccccccCCCCeEEEEEEECCCCcceEEe
Q 008085 58 PGPRIVAR---EGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWH 130 (578)
Q Consensus 58 pgP~i~~~---~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH 130 (578)
+.|.+.++ ....|.|+|.|.-..+..+........ .+.+ .+..|+||++.+..|.+ ...--||.
T Consensus 7 ~~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y~-----~~~~--~~~~v~ag~~~~~~w~l--~~s~gwYD 73 (89)
T PF05506_consen 7 YAPEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAYG-----GGGP--WTYTVAAGQTVSLTWPL--AASGGWYD 73 (89)
T ss_pred CCCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCcC-----CCCC--EEEEECCCCEEEEEEee--cCCCCcEE
Confidence 34555554 235899999999888877777763221 1111 34679999999999987 23344665
No 83
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=63.58 E-value=8.1 Score=30.22 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=0.0
Q ss_pred EecCC--EEEEEEEecCCCCeeEEeecccccCCcCCCCCCCccccccCCCCeEEEEEEEC----CCCcce
Q 008085 64 AREGD--RLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTIS----GQRGTL 127 (578)
Q Consensus 64 ~~~Gd--~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~tq~~i~PG~~~~Y~~~~~----~~~Gt~ 127 (578)
|++|+ ++.++|+|....+..---=-+.. +.+|....-..+-..|+||++.+..|.+. -.+|+|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y 69 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSL-PEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTY 69 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeC-CCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceE
No 84
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=62.73 E-value=64 Score=30.32 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=55.3
Q ss_pred eEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEec
Q 008085 454 KVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRAD 533 (578)
Q Consensus 454 ~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~ad 533 (578)
+.+.++.|+.+++.+... +..|.|.+-.... .+| +-||-...+.|.++
T Consensus 116 ~~l~lp~g~~v~~~ltS~----DViHsf~vp~l~~-------------------------k~d---~~PG~~~~~~~~~~ 163 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSS----DVIHSFSVPDLNL-------------------------KMD---AIPGRINHLFFCPD 163 (194)
T ss_pred ceEEEeCCCEEEeeeecC----ccccceeccccCc-------------------------eee---cCCCceEEEEEEcC
Confidence 357789999999999874 3566665544321 233 34888899999999
Q ss_pred CceeEEEEeechhhh-hccceEEEEEecC
Q 008085 534 NPGVWFMHCHFEVHI-SWGLKMAWIVLNG 561 (578)
Q Consensus 534 npG~w~~HCHil~H~-d~GMm~~~~V~~~ 561 (578)
.||.|-.-|.-+-=. +..|-..++|.++
T Consensus 164 ~~G~y~g~C~e~CG~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 164 RHGVFVGYCSELCGVGHSYMPIVIEVVDV 192 (194)
T ss_pred CCEEEEEEeehhhCcCcccCcEEEEEEcC
Confidence 999999999986533 4567777777654
No 85
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=62.21 E-value=31 Score=33.35 Aligned_cols=77 Identities=14% Similarity=0.282 Sum_probs=56.2
Q ss_pred ceEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEe
Q 008085 453 TKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRA 532 (578)
Q Consensus 453 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~a 532 (578)
.+.+.++.|+.|++.+.+.+ ..|.|.+-.... . +.+-||....+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D----ViHsf~ip~~~~-------------------------k---~d~~Pg~~~~~~~~~ 186 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD----VIHSWTVPSLGV-------------------------K---VDAIPGRLNQLSFEP 186 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc----cccceeccccCc-------------------------e---eECCCCcceeEEEEe
Confidence 34678899999999999853 455555433211 1 224578888899999
Q ss_pred cCceeEEEEeechhhh-hccceEEEEEecC
Q 008085 533 DNPGVWFMHCHFEVHI-SWGLKMAWIVLNG 561 (578)
Q Consensus 533 dnpG~w~~HCHil~H~-d~GMm~~~~V~~~ 561 (578)
+.||.+...|.-+-.. +..|-..++|.+.
T Consensus 187 ~~~g~y~~~C~e~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 187 KRPGVFYGQCSEICGANHSFMPIVVEAVPL 216 (228)
T ss_pred CCCEEEEEECccccCcCcCCCeEEEEEECH
Confidence 9999999999987755 5677777877654
No 86
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=59.88 E-value=23 Score=34.19 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=54.0
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEecC
Q 008085 455 VVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADN 534 (578)
Q Consensus 455 ~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~adn 534 (578)
-+.++.|+.|++.+...+ ..| .|+|-+.+ ..+|.+ ||-...+.|++|.
T Consensus 140 el~lP~g~pV~~~ltS~D----ViH-------SF~VP~l~------------------~K~Dai---PG~~n~~~~~~~~ 187 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNS----VMN-------SFFIPQLG------------------SQIYAM---AGMQTKLHLIANE 187 (226)
T ss_pred eEEEECCCEEEEEEEECc----hhh-------hhhhhhcC------------------CeeecC---CCceEEEEEEeCC
Confidence 468899999999998743 444 45554432 134554 7888889999999
Q ss_pred ceeEEEEeechhhh-hccceEEEEEecC
Q 008085 535 PGVWFMHCHFEVHI-SWGLKMAWIVLNG 561 (578)
Q Consensus 535 pG~w~~HCHil~H~-d~GMm~~~~V~~~ 561 (578)
||.|.-.|--.-=. +..|...++|.++
T Consensus 188 ~G~y~g~CaE~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 188 PGVYDGISANYSGPGFSGMKFKAIATDR 215 (226)
T ss_pred CEEEEEEchhhcCcCccCCeEEEEEECH
Confidence 99999999765422 3668788877654
No 87
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=58.72 E-value=1.2e+02 Score=29.24 Aligned_cols=77 Identities=13% Similarity=0.043 Sum_probs=52.9
Q ss_pred CceEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCCCCCCccccccCCCCeEEEEEEECCCCcceEEecCc-ccc-
Q 008085 59 GPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHI-SWL- 136 (578)
Q Consensus 59 gP~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~-~~~- 136 (578)
...|.+..|..|++.+++.. .+ |+..++.- |+ . .-.-||..-...|++ +++|+|+-.|.. .|.
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D----Vi--Hsf~ip~~----~~---k-~d~~Pg~~~~~~~~~-~~~g~y~~~C~e~CG~~ 203 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD----VI--HSWTVPSL----GV---K-VDAIPGRLNQLSFEP-KRPGVFYGQCSEICGAN 203 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc----cc--cceecccc----Cc---e-eECCCCcceeEEEEe-CCCEEEEEECccccCcC
Confidence 36799999999999999853 22 55554421 21 1 223578888888886 899999988875 232
Q ss_pred ccceeeeEEEeCCC
Q 008085 137 RATVYGPLVIFPKR 150 (578)
Q Consensus 137 ~~Gl~G~liV~~~~ 150 (578)
.+.|.+.++|.+++
T Consensus 204 H~~M~~~v~v~~~~ 217 (228)
T MTH00140 204 HSFMPIVVEAVPLE 217 (228)
T ss_pred cCCCeEEEEEECHH
Confidence 26677777776653
No 88
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=56.63 E-value=40 Score=28.29 Aligned_cols=69 Identities=19% Similarity=0.330 Sum_probs=44.3
Q ss_pred EEEEEecCCCCeeEEeecccccCCcCCC-CCCCccccccCCCCeEEEEEEECCCCcceEEecCccccccceeeeEEEeCC
Q 008085 71 IIKVVNHVPNNISIHWHGIRQLLSGWAD-GPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRATVYGPLVIFPK 149 (578)
Q Consensus 71 ~v~l~N~l~~~~siH~HG~~~~~~~~~D-G~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~ 149 (578)
.|+++|.|.....|..|=-.-. .| |+ ..|.||+++..+|.. +--|+--|.|+..........-+.|...
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S~d----~Dlg~-----~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~~~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKSKD----DDLGW-----HVLKPGQSYSFSFRD-NFFGTTLFWCHFRWPGGKYHHSFDVYRS 71 (110)
T ss_pred EEEEEECCCCCCeEEEEeeCCC----ccCCC-----EECCCCCEEEEEEec-CcCCceeEEEEEEECCccEEEEEEEEec
Confidence 4889999965555555543211 12 33 468999999999985 5668888889976622223555555433
No 89
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=52.38 E-value=52 Score=26.74 Aligned_cols=70 Identities=19% Similarity=0.150 Sum_probs=39.6
Q ss_pred EecCcEEEEEEE--ecCCCCeEEEEEcCce--EEEEEeCCCCCCceEEeEE-EECCCceEEEEEEeCCCCCCcceEEEec
Q 008085 217 VKPGKTYLLRLI--NAALNDELFFSIANHS--VTVVDVDAIYIKSFQTDIL-LITPGQTTNILLKAKPSYPNATFLMSAR 291 (578)
Q Consensus 217 v~~G~~~rlRli--Na~~~~~~~~~i~gh~--~~via~DG~~~~P~~~~~l-~l~pGeR~dvlv~~~~~~~~g~y~l~~~ 291 (578)
-+|||++.+|++ +... .. -...+.. ++|..-+|..+ ....+ .......++.-+..+....-|.|.|++.
T Consensus 11 YrPGetV~~~~~~~~~~~-~~--~~~~~~~~~v~i~dp~g~~v---~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~ 84 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-DF--KPPANSPVTVTIKDPSGNEV---FRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVK 84 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-TC--SCESSEEEEEEEEETTSEEE---EEEEEEETTCTTEEEEEEE--SS---EEEEEEEE
T ss_pred cCCCCEEEEEEEEecccc-cc--ccccCCceEEEEECCCCCEE---EEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEE
Confidence 478999999999 6662 11 1122233 44555455321 12223 3467888999999888665699999987
Q ss_pred c
Q 008085 292 P 292 (578)
Q Consensus 292 ~ 292 (578)
.
T Consensus 85 ~ 85 (99)
T PF01835_consen 85 T 85 (99)
T ss_dssp E
T ss_pred E
Confidence 4
No 90
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=48.67 E-value=1.4e+02 Score=23.85 Aligned_cols=67 Identities=15% Similarity=0.296 Sum_probs=38.9
Q ss_pred EEecCcEE--EEEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEeEE-EECCCceEEEEEEeCCCCCCcceEEEecc
Q 008085 216 KVKPGKTY--LLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDIL-LITPGQTTNILLKAKPSYPNATFLMSARP 292 (578)
Q Consensus 216 ~v~~G~~~--rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l-~l~pGeR~dvlv~~~~~~~~g~y~l~~~~ 292 (578)
.+.+|+.+ .+.+.|.|....-.+.+. +-.||..+ ....| .|.||+...+-+....+ ..|.|.|++..
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~-~~G~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPP-SPGSYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-S-S-CEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeC-CCCeEEEEEEE
Confidence 34566655 467889986654333333 23455432 33445 78999999888887764 22888888764
No 91
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=48.22 E-value=68 Score=24.23 Aligned_cols=65 Identities=15% Similarity=0.287 Sum_probs=36.3
Q ss_pred eeEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEec
Q 008085 213 FKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSAR 291 (578)
Q Consensus 213 ~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~ 291 (578)
..+++++|+++++.+-+.+. +..+.+...+|..+....-.. -..+..--+.+...++ |+|+|+..
T Consensus 5 y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~~~---GtYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAPAA---GTYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEESSS---EEEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcCCC---EEEEEEEE
Confidence 57889999998888876664 223566666654331111011 0112223333455555 99998864
No 92
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=47.95 E-value=45 Score=32.23 Aligned_cols=62 Identities=10% Similarity=0.119 Sum_probs=44.1
Q ss_pred eeEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEecc
Q 008085 213 FKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARP 292 (578)
Q Consensus 213 ~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~ 292 (578)
-.+.+..|+.+||++-.... . |.|+| |...-....-||..-.+-++++++ |.|..+|..
T Consensus 139 nel~lP~g~pV~~~ltS~DV--i-------HSF~V---------P~l~~K~DaiPG~~n~~~~~~~~~---G~y~g~CaE 197 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSV--M-------NSFFI---------PQLGSQIYAMAGMQTKLHLIANEP---GVYDGISAN 197 (226)
T ss_pred ceEEEECCCEEEEEEEECch--h-------hhhhh---------hhcCCeeecCCCceEEEEEEeCCC---EEEEEEchh
Confidence 35788888888887766553 2 44444 333334455689988999999988 999999987
Q ss_pred ccC
Q 008085 293 YAT 295 (578)
Q Consensus 293 ~~~ 295 (578)
++.
T Consensus 198 ~CG 200 (226)
T TIGR01433 198 YSG 200 (226)
T ss_pred hcC
Confidence 654
No 93
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=46.65 E-value=1.5e+02 Score=26.87 Aligned_cols=74 Identities=12% Similarity=0.187 Sum_probs=50.9
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEecC
Q 008085 455 VVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADN 534 (578)
Q Consensus 455 ~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~adn 534 (578)
.+.++.|..|++.+... +..|.|.+-.-.. ..| +-||-...+.|.++.
T Consensus 74 ~LvLP~g~~Vr~~lTS~----DVIHSF~VP~lgv-------------------------K~D---avPGr~n~l~~~~~~ 121 (162)
T PTZ00047 74 RLTLPTRTHIRFLITAT----DVIHSWSVPSLGI-------------------------KAD---AIPGRLHKINTFILR 121 (162)
T ss_pred CEEEeCCCEEEEEEEeC----ccceeeeccccCc-------------------------eee---ccCCceEEEEEecCC
Confidence 46788999999999874 3556555433211 223 337777788999999
Q ss_pred ceeEEEEeechhh-hhccceEEEEEec
Q 008085 535 PGVWFMHCHFEVH-ISWGLKMAWIVLN 560 (578)
Q Consensus 535 pG~w~~HCHil~H-~d~GMm~~~~V~~ 560 (578)
||.|...|.-+-= -+..|-..++|..
T Consensus 122 ~G~y~gqCsElCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 122 EGVFYGQCSEMCGTLHGFMPIVVEAVS 148 (162)
T ss_pred CeEEEEEcchhcCcCccCceEEEEEeC
Confidence 9999999987642 2245767776654
No 94
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=42.96 E-value=1.8e+02 Score=30.01 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=14.3
Q ss_pred ccccCCCCeEEEEEEE
Q 008085 105 QCPIQTGQSYVYNFTI 120 (578)
Q Consensus 105 q~~i~PG~~~~Y~~~~ 120 (578)
+.||+|||+.+.+.++
T Consensus 337 ~~pI~PGETr~v~v~a 352 (399)
T TIGR03079 337 QSAIAPGETVEVKMEA 352 (399)
T ss_pred CCCcCCCcceEEEEEE
Confidence 4689999999999987
No 95
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=42.49 E-value=50 Score=28.02 Aligned_cols=48 Identities=17% Similarity=0.089 Sum_probs=29.1
Q ss_pred EEEEecCCCC---eeEEeecccccCC---cCCCCCCCccccccCCCCeEEEEEEE
Q 008085 72 IKVVNHVPNN---ISIHWHGIRQLLS---GWADGPAYITQCPIQTGQSYVYNFTI 120 (578)
Q Consensus 72 v~l~N~l~~~---~siH~HG~~~~~~---~~~DG~~~~tq~~i~PG~~~~Y~~~~ 120 (578)
|++.|....+ .+=|||=-...+. -.-+||-| .|.-|+||++|+|.=-.
T Consensus 34 itI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVG-eQP~l~PG~~y~YtSg~ 87 (126)
T COG2967 34 VTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVG-EQPLLAPGEEYQYTSGC 87 (126)
T ss_pred EEEecCCCccceeeeeEEEEecCCCcEEEEEcCceec-cccccCCCCceEEcCCc
Confidence 6777776544 5678883332211 01345543 46789999999997543
No 96
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=41.73 E-value=1.4e+02 Score=26.38 Aligned_cols=64 Identities=19% Similarity=0.291 Sum_probs=43.9
Q ss_pred cEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEE-------eEEEECCCceE-EEEEEeCCCCCCcceEEEec
Q 008085 221 KTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQT-------DILLITPGQTT-NILLKAKPSYPNATFLMSAR 291 (578)
Q Consensus 221 ~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~-------~~l~l~pGeR~-dvlv~~~~~~~~g~y~l~~~ 291 (578)
.+|-|.+-|.|.. .+.++...++|+ +||..+.|..+ ++|.|.|||-. .+.+.-.-. |.-.+...
T Consensus 70 ~t~t~yiKNtG~~---~~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~lS---Gyhri~V~ 141 (154)
T COG3354 70 YTYTFYIKNTGSD---SIAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEALS---GYHRIVVS 141 (154)
T ss_pred eEEEEEEecCCCc---ccccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccCCC---cceEEEEE
Confidence 4789999999953 357788888877 69988765432 57779999988 555544333 55555443
No 97
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=40.11 E-value=3.2e+02 Score=25.65 Aligned_cols=75 Identities=8% Similarity=-0.078 Sum_probs=49.8
Q ss_pred eEEEecCCEEEEEEEecCCCCeeEEeecccccCCcCCCCCCCccccccCCCCeEEEEEEECCCCcceEEecCc-ccc-cc
Q 008085 61 RIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHI-SWL-RA 138 (578)
Q Consensus 61 ~i~~~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~-~~~-~~ 138 (578)
.+.+..|..|+++++-.. . .|+..++.- ++.+. .-||..-+..|++ +++|+|.-.|.. .|. .+
T Consensus 117 ~l~lp~g~~v~~~ltS~D-V-----iHsf~vp~l-------~~k~d-~~PG~~~~~~~~~-~~~G~y~g~C~e~CG~~H~ 181 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD-V-----IHSFSVPDL-------NLKMD-AIPGRINHLFFCP-DRHGVFVGYCSELCGVGHS 181 (194)
T ss_pred eEEEeCCCEEEeeeecCc-c-----ccceecccc-------Cceee-cCCCceEEEEEEc-CCCEEEEEEeehhhCcCcc
Confidence 477888888888886542 1 244443321 11122 3479988888886 899999988875 233 37
Q ss_pred ceeeeEEEeCCC
Q 008085 139 TVYGPLVIFPKR 150 (578)
Q Consensus 139 Gl~G~liV~~~~ 150 (578)
.|.+-+.|.+++
T Consensus 182 ~M~~~v~v~~~~ 193 (194)
T MTH00047 182 YMPIVIEVVDVD 193 (194)
T ss_pred cCcEEEEEEcCC
Confidence 788888887664
No 98
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=39.27 E-value=22 Score=29.31 Aligned_cols=34 Identities=29% Similarity=0.269 Sum_probs=28.3
Q ss_pred EEEEcCCCCCceEEEecCCEEEEEEEecCCCCee
Q 008085 50 IITVNGQFPGPRIVAREGDRLIIKVVNHVPNNIS 83 (578)
Q Consensus 50 ~~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~s 83 (578)
-+.+||+.--|.=.|+.||.|+|++.|..-.-..
T Consensus 35 rV~vNG~~aKpS~~VK~GD~l~i~~~~~~~~v~V 68 (100)
T COG1188 35 RVKVNGQRAKPSKEVKVGDILTIRFGNKEFTVKV 68 (100)
T ss_pred eEEECCEEcccccccCCCCEEEEEeCCcEEEEEE
Confidence 4678999888999999999999999998644333
No 99
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=39.08 E-value=43 Score=27.16 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=27.4
Q ss_pred EEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCC--C--ceEEeEEEECCCceEEE
Q 008085 222 TYLLRLINAALNDELFFSIANHSVTVVDVDAIYI--K--SFQTDILLITPGQTTNI 273 (578)
Q Consensus 222 ~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~--~--P~~~~~l~l~pGeR~dv 273 (578)
.|++||-|.+.. .+.|-...+.|...||... + -+.-..=.|.|||.+..
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 588999999965 3566666777776666321 0 11223457888886554
No 100
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=38.59 E-value=1.3e+02 Score=31.42 Aligned_cols=64 Identities=14% Similarity=0.241 Sum_probs=43.8
Q ss_pred cceeEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEe
Q 008085 211 DTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSA 290 (578)
Q Consensus 211 ~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~ 290 (578)
....+++++|+ ++|.+.|.+... +.|.++ +|..+. -..=.|.||.+..+.+.+ .+ |+|.+.|
T Consensus 42 ~p~~~tVpAG~-~~f~V~N~~~~~--------~Efe~~--~~~~vv---~e~EnIaPG~s~~l~~~L-~p---GtY~~~C 103 (375)
T PRK10378 42 EPMTLTVNAGK-TQFIIQNHSQKA--------LEWEIL--KGVMVV---EERENIAPGFSQKMTANL-QP---GEYDMTC 103 (375)
T ss_pred ccCceeeCCCC-EEEEEEeCCCCc--------ceEEee--cccccc---ccccccCCCCceEEEEec-CC---ceEEeec
Confidence 34679999996 899999998544 234444 222110 012389999988888777 44 9999999
Q ss_pred cc
Q 008085 291 RP 292 (578)
Q Consensus 291 ~~ 292 (578)
..
T Consensus 104 ~~ 105 (375)
T PRK10378 104 GL 105 (375)
T ss_pred Cc
Confidence 53
No 101
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=38.57 E-value=68 Score=30.72 Aligned_cols=62 Identities=18% Similarity=0.142 Sum_probs=43.9
Q ss_pred eeEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEecc
Q 008085 213 FKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARP 292 (578)
Q Consensus 213 ~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~ 292 (578)
..+.+..|+.+||++-.... . |.|.| |...-....-||..-.+-++++++ |.|..+|..
T Consensus 130 n~l~iP~g~~v~~~ltS~DV--i-------Hsf~v---------P~l~~k~daiPG~~~~~~~~~~~~---G~y~g~Cae 188 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSADT--M-------TSFWI---------PQLGGQKYAMTGMTMNWYLQADQV---GTYRGRNAN 188 (217)
T ss_pred CcEEEECCCEEEEEEECCch--h-------hhhhc---------hhhCceeecCCCceEEEEEEeCCC---EEEEEEehh
Confidence 34777888888877766553 2 34444 443344555689999999999988 999999987
Q ss_pred ccC
Q 008085 293 YAT 295 (578)
Q Consensus 293 ~~~ 295 (578)
++.
T Consensus 189 ~CG 191 (217)
T TIGR01432 189 FNG 191 (217)
T ss_pred hcC
Confidence 644
No 102
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=38.55 E-value=49 Score=28.74 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=11.9
Q ss_pred CCCCCccccccCCCCeEEEE
Q 008085 98 DGPAYITQCPIQTGQSYVYN 117 (578)
Q Consensus 98 DG~~~~tq~~i~PG~~~~Y~ 117 (578)
+||-| .|..|.||++|+|.
T Consensus 67 ~GVVG-~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 67 EGVVG-EQPVLAPGESFEYT 85 (127)
T ss_pred Cceec-CCceECCCCCeEEe
Confidence 44433 24567999977764
No 103
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=38.03 E-value=83 Score=27.34 Aligned_cols=49 Identities=10% Similarity=0.188 Sum_probs=32.6
Q ss_pred EEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCC----CceEEeEEEECCCceEEE
Q 008085 222 TYLLRLINAALNDELFFSIANHSVTVVDVDAIYI----KSFQTDILLITPGQTTNI 273 (578)
Q Consensus 222 ~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~----~P~~~~~l~l~pGeR~dv 273 (578)
.|++||.|.+.. .+.|-...+.+...||... ..+....=.|.|||.+..
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 578999998743 4677778888887777532 122334557888886654
No 104
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=37.81 E-value=1e+02 Score=29.83 Aligned_cols=61 Identities=10% Similarity=0.093 Sum_probs=42.9
Q ss_pred eEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEeccc
Q 008085 214 KLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY 293 (578)
Q Consensus 214 ~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~~ 293 (578)
.+.+..|+.+|+++.+... .+.|.+.+..+ .+..-||..-.+.+.++++ |.|+..|..+
T Consensus 141 ~lvlP~~~~v~~~~tS~DV--iHsf~vP~~~~----------------k~daiPG~~~~~~~~~~~~---G~~~g~Cse~ 199 (228)
T MTH00008 141 RAVLPMQTEIRVLVTAADV--IHSWTVPSLGV----------------KVDAVPGRLNQIGFTITRP---GVFYGQCSEI 199 (228)
T ss_pred eEEEecCCEEEEEEEeCCc--cccccccccCc----------------ceecCCCceEEEEEEeCCC---EEEEEEChhh
Confidence 5788999999999988553 33333333222 2344588888888888888 9999999865
Q ss_pred cC
Q 008085 294 AT 295 (578)
Q Consensus 294 ~~ 295 (578)
+.
T Consensus 200 CG 201 (228)
T MTH00008 200 CG 201 (228)
T ss_pred cC
Confidence 43
No 105
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=37.33 E-value=1.5e+02 Score=28.90 Aligned_cols=77 Identities=16% Similarity=0.282 Sum_probs=54.6
Q ss_pred ceEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEe
Q 008085 453 TKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRA 532 (578)
Q Consensus 453 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~a 532 (578)
.+.+.++.|+.|++.+... +..|.|.+-.-.. .+|.+ ||-...+.|++
T Consensus 150 ~n~lvlP~~~~v~~~~tS~----DViHsf~iP~lgv-------------------------K~Dai---PG~~n~~~~~~ 197 (240)
T MTH00023 150 DNRLVVPINTHVRILVTGA----DVLHSFAVPSLGL-------------------------KIDAV---PGRLNQTGFFI 197 (240)
T ss_pred CceEEEecCCEEEEEEEcC----CcccceeecccCc-------------------------eeecC---CCcceeEEEEc
Confidence 3457889999999999874 3556555443211 23433 67777889999
Q ss_pred cCceeEEEEeechhhh-hccceEEEEEecC
Q 008085 533 DNPGVWFMHCHFEVHI-SWGLKMAWIVLNG 561 (578)
Q Consensus 533 dnpG~w~~HCHil~H~-d~GMm~~~~V~~~ 561 (578)
+.||.+.-.|.-+--. +.-|-..++|.+.
T Consensus 198 ~~~G~y~g~C~e~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 198 KRPGVFYGQCSEICGANHSFMPIVIEAVSL 227 (240)
T ss_pred CCCEEEEEEchhhcCcCccCCeEEEEEECH
Confidence 9999999999887654 5667777777654
No 106
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=36.48 E-value=2.7e+02 Score=23.98 Aligned_cols=62 Identities=16% Similarity=0.042 Sum_probs=43.4
Q ss_pred EEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCC-------CceEEeEEEECCCceEEEEEEeCCCC
Q 008085 215 LKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYI-------KSFQTDILLITPGQTTNILLKAKPSY 281 (578)
Q Consensus 215 ~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~-------~P~~~~~l~l~pGeR~dvlv~~~~~~ 281 (578)
|++.....|+|++-..+ ...|.|+|..+ |+.++..- .+....++.|..|++|+|-|...+..
T Consensus 54 ~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~~ 122 (145)
T PF07691_consen 54 FKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNRG 122 (145)
T ss_dssp EEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEECS
T ss_pred EecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEECC
Confidence 67777678999998443 56788998754 66665432 34566789999999999999877653
No 107
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=36.21 E-value=1.7e+02 Score=28.27 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=54.5
Q ss_pred eEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEec
Q 008085 454 KVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRAD 533 (578)
Q Consensus 454 ~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~ad 533 (578)
+.+.++.|+.|++.+...+ .. |.|+|-+.|. ..| +-||....+.|.++
T Consensus 140 n~lvlP~~~~v~~~~tS~D----Vi-------Hsf~ip~~~~------------------k~d---a~PG~~~~~~~~~~ 187 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAED----VL-------HSWAVPALGV------------------KMD---AVPGRLNQTAFIAS 187 (230)
T ss_pred ceEEEecCcEEEEEEEeCc----cc-------cceeccccCC------------------ccc---cCCCceEEEEEEeC
Confidence 4578899999999998753 33 3566655431 233 34788888999999
Q ss_pred CceeEEEEeechhhh-hccceEEEEEecC
Q 008085 534 NPGVWFMHCHFEVHI-SWGLKMAWIVLNG 561 (578)
Q Consensus 534 npG~w~~HCHil~H~-d~GMm~~~~V~~~ 561 (578)
.||.+-..|.-+--. +..|-..++|.+.
T Consensus 188 ~~G~~~g~C~e~CG~~H~~M~~~v~vv~~ 216 (230)
T MTH00129 188 RPGVFYGQCSEICGANHSFMPIVVEAVPL 216 (230)
T ss_pred CceEEEEEChhhccccccCCcEEEEEECH
Confidence 999999999885533 4667777777653
No 108
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=35.98 E-value=2.2e+02 Score=24.47 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=12.7
Q ss_pred cccCCCCeEEEEEEEC
Q 008085 106 CPIQTGQSYVYNFTIS 121 (578)
Q Consensus 106 ~~i~PG~~~~Y~~~~~ 121 (578)
..|+|+++.+..|++.
T Consensus 87 Vtl~~~~sk~V~~~i~ 102 (121)
T PF06030_consen 87 VTLPPNESKTVTFTIK 102 (121)
T ss_pred EEECCCCEEEEEEEEE
Confidence 4589999988888873
No 109
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=35.59 E-value=1.6e+02 Score=28.41 Aligned_cols=76 Identities=14% Similarity=0.291 Sum_probs=54.0
Q ss_pred eEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEec
Q 008085 454 KVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRAD 533 (578)
Q Consensus 454 ~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~ad 533 (578)
+.+.++.|+.|++.+.+.+ ..|.|.+-+... ..| .-||....+.|.++
T Consensus 140 n~lvlP~~~~v~~~~tS~D----ViHsf~vP~~~~-------------------------k~d---aiPG~~~~~~~~~~ 187 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD----VIHSWTVPSLGV-------------------------KVD---AVPGRLNQIGFTIT 187 (228)
T ss_pred ceEEEecCCEEEEEEEeCC----ccccccccccCc-------------------------cee---cCCCceEEEEEEeC
Confidence 4678899999999999853 455544443321 122 34788888899999
Q ss_pred CceeEEEEeechhhh-hccceEEEEEecC
Q 008085 534 NPGVWFMHCHFEVHI-SWGLKMAWIVLNG 561 (578)
Q Consensus 534 npG~w~~HCHil~H~-d~GMm~~~~V~~~ 561 (578)
.||.+..-|.-+-.. +.-|-..++|.+.
T Consensus 188 ~~G~~~g~Cse~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00008 188 RPGVFYGQCSEICGANHSFMPIVLEAVDT 216 (228)
T ss_pred CCEEEEEEChhhcCcCccCceeEEEEECH
Confidence 999999999876654 4567677776653
No 110
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=34.17 E-value=1.7e+02 Score=26.51 Aligned_cols=61 Identities=10% Similarity=0.080 Sum_probs=40.4
Q ss_pred eEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEeccc
Q 008085 214 KLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY 293 (578)
Q Consensus 214 ~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~~ 293 (578)
.+.+..|+.+||++..+.. .+.|.+....+ .+..-||..-.+.+.+..+ |.|...|..+
T Consensus 74 ~LvLP~g~~Vr~~lTS~DV--IHSF~VP~lgv----------------K~DavPGr~n~l~~~~~~~---G~y~gqCsEl 132 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATDV--IHSWSVPSLGI----------------KADAIPGRLHKINTFILRE---GVFYGQCSEM 132 (162)
T ss_pred CEEEeCCCEEEEEEEeCcc--ceeeeccccCc----------------eeeccCCceEEEEEecCCC---eEEEEEcchh
Confidence 4778889988887766553 33444443322 2334467766777777777 9999999865
Q ss_pred cC
Q 008085 294 AT 295 (578)
Q Consensus 294 ~~ 295 (578)
+.
T Consensus 133 CG 134 (162)
T PTZ00047 133 CG 134 (162)
T ss_pred cC
Confidence 54
No 111
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=33.94 E-value=1.1e+02 Score=29.69 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=42.4
Q ss_pred eEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEeccc
Q 008085 214 KLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY 293 (578)
Q Consensus 214 ~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~~ 293 (578)
.+.+..|+.+||++..... . |.|.+-+. .-.+..-||.+-.+.+.++++ |.|...|..+
T Consensus 141 ~lvlP~~~~v~~~~tS~DV--i-------Hsf~ip~~---------~~k~da~PG~~~~~~~~~~~~---G~~~g~C~e~ 199 (230)
T MTH00129 141 RMVVPVESPIRVLVSAEDV--L-------HSWAVPAL---------GVKMDAVPGRLNQTAFIASRP---GVFYGQCSEI 199 (230)
T ss_pred eEEEecCcEEEEEEEeCcc--c-------cceecccc---------CCccccCCCceEEEEEEeCCc---eEEEEEChhh
Confidence 5788999998888766553 3 44444221 113345588888888888888 9999999865
Q ss_pred cC
Q 008085 294 AT 295 (578)
Q Consensus 294 ~~ 295 (578)
+.
T Consensus 200 CG 201 (230)
T MTH00129 200 CG 201 (230)
T ss_pred cc
Confidence 44
No 112
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=33.55 E-value=2.2e+02 Score=24.05 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=13.0
Q ss_pred EEEEEecCCC-CeEEEEEcCce
Q 008085 224 LLRLINAALN-DELFFSIANHS 244 (578)
Q Consensus 224 rlRliNa~~~-~~~~~~i~gh~ 244 (578)
++|++|++.. ..+.+.++|-.
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~~ 24 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGTK 24 (122)
T ss_pred EEEEEEcCCCCccEEEEECCEE
Confidence 5777777755 45566665443
No 113
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=33.09 E-value=1.6e+02 Score=25.19 Aligned_cols=63 Identities=25% Similarity=0.395 Sum_probs=36.7
Q ss_pred CCceEEEecCCEEEEEEEecC---CCCeeEEee----ccccc-CCcCCCCCCCccccccCCCCeEEEEEEEC
Q 008085 58 PGPRIVAREGDRLIIKVVNHV---PNNISIHWH----GIRQL-LSGWADGPAYITQCPIQTGQSYVYNFTIS 121 (578)
Q Consensus 58 pgP~i~~~~Gd~v~v~l~N~l---~~~~siH~H----G~~~~-~~~~~DG~~~~tq~~i~PG~~~~Y~~~~~ 121 (578)
++..=.+++|..+.+.+.=.. ........| |+..+ +....||=-. ..|||..|+.++|.+.++
T Consensus 18 ~~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~-l~CPl~~G~~~~y~~~~~ 88 (120)
T cd00918 18 SGDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKY-VKCPIKKGQHYDIKYTWN 88 (120)
T ss_pred CCCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCccc-EeCCCcCCcEEEEEEeee
Confidence 345567788888777764222 222333344 43333 2112455212 369999999999999873
No 114
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=33.03 E-value=1.3e+02 Score=29.09 Aligned_cols=61 Identities=5% Similarity=0.026 Sum_probs=41.7
Q ss_pred eEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEeccc
Q 008085 214 KLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY 293 (578)
Q Consensus 214 ~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~~ 293 (578)
.+.++.|+.+||++..... .+.|.+.... -.+..-||..-.+-+.++++ |.|...|..+
T Consensus 141 ~lvlP~~~~v~~~~tS~DV--iHsf~ip~lg----------------~k~daiPG~~~~~~~~~~~~---G~~~g~Cse~ 199 (227)
T MTH00098 141 RVVLPMEMPIRMLISSEDV--LHSWAVPSLG----------------LKTDAIPGRLNQTTLMSTRP---GLYYGQCSEI 199 (227)
T ss_pred eEEecCCCEEEEEEEECcc--cccccccccc----------------cceecCCCceEEEEEecCCc---EEEEEECccc
Confidence 5788899998888876653 3333333322 22344588888888888888 9999999865
Q ss_pred cC
Q 008085 294 AT 295 (578)
Q Consensus 294 ~~ 295 (578)
+.
T Consensus 200 CG 201 (227)
T MTH00098 200 CG 201 (227)
T ss_pred cC
Confidence 43
No 115
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=32.95 E-value=99 Score=27.50 Aligned_cols=34 Identities=18% Similarity=0.490 Sum_probs=25.9
Q ss_pred EECCCceEEEEE-EeCCCCCCcceEEEeccccCCC
Q 008085 264 LITPGQTTNILL-KAKPSYPNATFLMSARPYATGQ 297 (578)
Q Consensus 264 ~l~pGeR~dvlv-~~~~~~~~g~y~l~~~~~~~~~ 297 (578)
.|.||+.+.|.+ ...+|..+|.|.+.+.+...+.
T Consensus 98 PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p~G~ 132 (146)
T PF10989_consen 98 PVPPGTTVTVVLSPVRNPRSGGTYQFNVTAFPPGD 132 (146)
T ss_pred CCCCCCEEEEEEEeeeCCCCCCeEEEEEEEECCCC
Confidence 568999999999 5556656799999988755443
No 116
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=32.54 E-value=1.2e+02 Score=22.62 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=27.3
Q ss_pred EEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEeEEEECCCceEE
Q 008085 215 LKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTN 272 (578)
Q Consensus 215 ~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGeR~d 272 (578)
+++.+|+..+||.-... .+.+.+-.+++.. +|. .+-+.|.+||++.
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~ 47 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR-EGD------PDDYWLQAGDSLR 47 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC-CCC------CCCEEECCCCEEE
Confidence 56778888888855443 3677766777754 442 2334455555543
No 117
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.88 E-value=1.5e+02 Score=28.79 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=42.9
Q ss_pred eeEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEecc
Q 008085 213 FKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARP 292 (578)
Q Consensus 213 ~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~ 292 (578)
-.+.+..|+.+|+++-++.. .+.|.+.+..+ .+..-||..-.+.+.++.+ |.|...|..
T Consensus 144 n~lvlP~~~~v~~~itS~DV--iHsf~vp~lg~----------------k~daiPG~~~~~~~~~~~~---G~y~g~Cse 202 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAADV--LHSFAVPSLSV----------------KIDAVPGRLNQTSFFIKRP---GVFYGQCSE 202 (234)
T ss_pred eEEEEecCcEEEEEEEeCch--hccccccccCc----------------eeEccCCceEeEEEEeCCC---EEEEEEChh
Confidence 35789999999999888753 33333333221 2344578888888888887 999999986
Q ss_pred ccC
Q 008085 293 YAT 295 (578)
Q Consensus 293 ~~~ 295 (578)
++.
T Consensus 203 ~CG 205 (234)
T MTH00051 203 ICG 205 (234)
T ss_pred hcC
Confidence 543
No 118
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=29.81 E-value=1.3e+02 Score=28.72 Aligned_cols=75 Identities=12% Similarity=0.078 Sum_probs=53.0
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEecC
Q 008085 455 VVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADN 534 (578)
Q Consensus 455 ~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~adn 534 (578)
-+.++.|+.|++.+.+.+ ..| .|+|=+.+ ..+|.+ ||-...+.|+++.
T Consensus 131 ~l~iP~g~~v~~~ltS~D----ViH-------sf~vP~l~------------------~k~dai---PG~~~~~~~~~~~ 178 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQSAD----TMT-------SFWIPQLG------------------GQKYAM---TGMTMNWYLQADQ 178 (217)
T ss_pred cEEEECCCEEEEEEECCc----hhh-------hhhchhhC------------------ceeecC---CCceEEEEEEeCC
Confidence 467889999999998743 334 46664332 134554 7888899999999
Q ss_pred ceeEEEEeechhh-hhccceEEEEEecC
Q 008085 535 PGVWFMHCHFEVH-ISWGLKMAWIVLNG 561 (578)
Q Consensus 535 pG~w~~HCHil~H-~d~GMm~~~~V~~~ 561 (578)
||.|--.|=-+-= -+.-|...++|.++
T Consensus 179 ~G~y~g~Cae~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 179 VGTYRGRNANFNGEGFADQTFDVNAVSE 206 (217)
T ss_pred CEEEEEEehhhcCccccCCeEEEEEeCH
Confidence 9999999965432 24467777777654
No 119
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=29.16 E-value=3.6e+02 Score=24.13 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=34.2
Q ss_pred ceEEEecCCEEEEEEEecCC---CCeeEEeeccc-----cc-CCcCCCCCCCc-----cccccCCCCeEEEEEEEC
Q 008085 60 PRIVAREGDRLIIKVVNHVP---NNISIHWHGIR-----QL-LSGWADGPAYI-----TQCPIQTGQSYVYNFTIS 121 (578)
Q Consensus 60 P~i~~~~Gd~v~v~l~N~l~---~~~siH~HG~~-----~~-~~~~~DG~~~~-----tq~~i~PG~~~~Y~~~~~ 121 (578)
+.=.+.+|.+..|.+.=... ....--.||+. ++ +-...||-... --||+.+||.++|.+..+
T Consensus 48 ~pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~slp 123 (158)
T KOG4063|consen 48 TPCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSLP 123 (158)
T ss_pred CceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEee
Confidence 34566777766655543332 22222233332 21 11235554432 349999999999999885
No 120
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.53 E-value=2.8e+02 Score=26.87 Aligned_cols=76 Identities=14% Similarity=0.284 Sum_probs=52.7
Q ss_pred ceEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEe
Q 008085 453 TKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRA 532 (578)
Q Consensus 453 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~a 532 (578)
.+.+.++.|+.+++.+...+ ..| .|+|-+.| ...| .-||....+.+.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~D----ViH-------sf~iP~lg------------------~k~d---aiPG~~~~~~~~~ 186 (230)
T MTH00185 139 DHRMVVPMESPIRVLITAED----VLH-------SWTVPALG------------------VKMD---AVPGRLNQATFII 186 (230)
T ss_pred CCeEEEecCCEEEEEEEcCc----ccc-------cccccccC------------------ceeE---ecCCceEEEEEEe
Confidence 34578899999999998753 444 35554332 1233 3478888888999
Q ss_pred cCceeEEEEeechhhh-hccceEEEEEec
Q 008085 533 DNPGVWFMHCHFEVHI-SWGLKMAWIVLN 560 (578)
Q Consensus 533 dnpG~w~~HCHil~H~-d~GMm~~~~V~~ 560 (578)
+.||.+.--|.-+-.. +.-|-..++|.+
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (230)
T MTH00185 187 SRPGLYYGQCSEICGANHSFMPIVVEAVP 215 (230)
T ss_pred CCcEEEEEEchhhcCcCcCCCeEEEEEEC
Confidence 9999999999886654 345666666654
No 121
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.27 E-value=1.9e+02 Score=28.02 Aligned_cols=62 Identities=5% Similarity=0.043 Sum_probs=42.1
Q ss_pred eeEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEecc
Q 008085 213 FKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARP 292 (578)
Q Consensus 213 ~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~ 292 (578)
..+.+..|+.+|+++-.+.. .+.|.+.+.. -.+..-||..-.+-+.++++ |.|..+|..
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--iHsf~iP~lg----------------~k~daiPG~~~~~~~~~~~~---G~~~g~Cse 198 (230)
T MTH00185 140 HRMVVPMESPIRVLITAEDV--LHSWTVPALG----------------VKMDAVPGRLNQATFIISRP---GLYYGQCSE 198 (230)
T ss_pred CeEEEecCCEEEEEEEcCcc--cccccccccC----------------ceeEecCCceEEEEEEeCCc---EEEEEEchh
Confidence 45788999998888766553 3333433322 22344578888888888888 999999986
Q ss_pred ccC
Q 008085 293 YAT 295 (578)
Q Consensus 293 ~~~ 295 (578)
++.
T Consensus 199 ~CG 201 (230)
T MTH00185 199 ICG 201 (230)
T ss_pred hcC
Confidence 544
No 122
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=28.21 E-value=3.7e+02 Score=22.96 Aligned_cols=62 Identities=16% Similarity=0.094 Sum_probs=38.5
Q ss_pred EEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCC-CceEEeEEEECCCceEEEEEEeCCCC
Q 008085 215 LKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYI-KSFQTDILLITPGQTTNILLKAKPSY 281 (578)
Q Consensus 215 ~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~-~P~~~~~l~l~pGeR~dvlv~~~~~~ 281 (578)
+++.....|+|++...+ ...|.|+|.. |++.++..- .+.....+.|..|++|.|.|...+..
T Consensus 52 i~~~~~G~y~f~~~~~~---~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~ 114 (136)
T smart00758 52 LKPPEDGEYTFSITSDD---GARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAG 114 (136)
T ss_pred EECCCCccEEEEEEcCC---cEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCC
Confidence 55555556899885333 4577888753 444443321 23344568888888888888876553
No 123
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=28.12 E-value=2e+02 Score=29.74 Aligned_cols=99 Identities=17% Similarity=0.229 Sum_probs=0.0
Q ss_pred EEEEEEEEEeecCceeeEE---EEEcCCCCCceEEEecCCEEEEEEEecCCCCee-------EEeecccccCCcCCCCCC
Q 008085 32 YKFDIKMQNVTRLCHTKSI---ITVNGQFPGPRIVAREGDRLIIKVVNHVPNNIS-------IHWHGIRQLLSGWADGPA 101 (578)
Q Consensus 32 ~~l~~~~~~~~~~g~~~~~---~~~NG~~pgP~i~~~~Gd~v~v~l~N~l~~~~s-------iH~HG~~~~~~~~~DG~~ 101 (578)
.+..+..+++..-|+...+ ++=||.-| +++.+=.+-.|++.|..-.... +.--|+.+.+.
T Consensus 249 V~~~v~~A~Y~vpgR~l~~~l~VtN~g~~p---v~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~------- 318 (381)
T PF04744_consen 249 VKVKVTDATYRVPGRTLTMTLTVTNNGDSP---VRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN------- 318 (381)
T ss_dssp EEEEEEEEEEESSSSEEEEEEEEEEESSS----BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES---------
T ss_pred eEEEEeccEEecCCcEEEEEEEEEcCCCCc---eEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC-------
Q ss_pred CccccccCCCCeEEEEEEECCCC-------------------cceEEecCccccc-cceeeeEE
Q 008085 102 YITQCPIQTGQSYVYNFTISGQR-------------------GTLFWHAHISWLR-ATVYGPLV 145 (578)
Q Consensus 102 ~~tq~~i~PG~~~~Y~~~~~~~~-------------------Gt~wYH~H~~~~~-~Gl~G~li 145 (578)
.||+|||+.+.+.++ +.+ |..++.+-.+... .-..|++|
T Consensus 319 ----~pI~PGETrtl~V~a-~dA~WeveRL~~l~~D~dsrfgGLLff~d~~G~r~i~~I~gpvI 377 (381)
T PF04744_consen 319 ----SPIAPGETRTLTVEA-QDAAWEVERLSDLIYDPDSRFGGLLFFFDASGNRYISEIAGPVI 377 (381)
T ss_dssp ----S-B-TT-EEEEEEEE-E-HHHHHTTGGGGGGSSS-EEEEEEEEEETTS-EEEEEEEEE-E
T ss_pred ----CCcCCCceEEEEEEe-ehhHHHHhhhhhhhcCcccceeEEEEEEcCCCCEEEEeccCccc
No 124
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=27.66 E-value=2.1e+02 Score=24.50 Aligned_cols=62 Identities=15% Similarity=0.262 Sum_probs=35.1
Q ss_pred ceEEEecCCEEEEEEEecCC-----CCeeEEee--cccccCCc-CCCCCCCc-cccccCCCCeEEEEEEEC
Q 008085 60 PRIVAREGDRLIIKVVNHVP-----NNISIHWH--GIRQLLSG-WADGPAYI-TQCPIQTGQSYVYNFTIS 121 (578)
Q Consensus 60 P~i~~~~Gd~v~v~l~N~l~-----~~~siH~H--G~~~~~~~-~~DG~~~~-tq~~i~PG~~~~Y~~~~~ 121 (578)
..=.+.+|+.+.+++.=... ..+.+|+. |+.++-.. ..|+=-.. ..|||..|+.++|.+.++
T Consensus 22 ~PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~~ 92 (123)
T cd00916 22 LPCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSLP 92 (123)
T ss_pred CCCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEeee
Confidence 45567778877776642221 12334443 55443221 13441111 459999999999999763
No 125
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=27.64 E-value=2.5e+02 Score=27.09 Aligned_cols=76 Identities=14% Similarity=0.279 Sum_probs=53.6
Q ss_pred eEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEec
Q 008085 454 KVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRAD 533 (578)
Q Consensus 454 ~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~ad 533 (578)
+.+.++.|+.|++.+...+ ..| .|+|-+.| ...| .-||....+.|.++
T Consensus 140 n~lvlP~~~~v~~~~tS~D----ViH-------sf~ip~lg------------------~k~d---aiPG~~~~~~~~~~ 187 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSED----VLH-------SWAVPSLG------------------LKTD---AIPGRLNQTTLMST 187 (227)
T ss_pred ceEEecCCCEEEEEEEECc----ccc-------cccccccc------------------ccee---cCCCceEEEEEecC
Confidence 4678899999999998753 443 45554332 1233 33788888999999
Q ss_pred CceeEEEEeechhhh-hccceEEEEEecC
Q 008085 534 NPGVWFMHCHFEVHI-SWGLKMAWIVLNG 561 (578)
Q Consensus 534 npG~w~~HCHil~H~-d~GMm~~~~V~~~ 561 (578)
.||.+..-|.-+-.. +.-|-..++|.+.
T Consensus 188 ~~G~~~g~Cse~CG~~H~~M~~~v~v~~~ 216 (227)
T MTH00098 188 RPGLYYGQCSEICGSNHSFMPIVLELVPL 216 (227)
T ss_pred CcEEEEEECccccCcCcCCceEEEEEeCH
Confidence 999999999886644 4567677776543
No 126
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=26.14 E-value=76 Score=28.24 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=20.8
Q ss_pred ecCCcEEEEEEEe-cCc---eeEEEEeech
Q 008085 520 VPSGGWVAIRFRA-DNP---GVWFMHCHFE 545 (578)
Q Consensus 520 v~~~~~~~irf~a-dnp---G~w~~HCHil 545 (578)
|+||..+.|.++. .|| |.|.|+|=..
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 6899999999964 566 8999999654
No 127
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=25.07 E-value=2.4e+02 Score=23.72 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=28.4
Q ss_pred EEEEEEEecCCCC-eEEEEEcCc-eEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCC
Q 008085 222 TYLLRLINAALND-ELFFSIANH-SVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPS 280 (578)
Q Consensus 222 ~~rlRliNa~~~~-~~~~~i~gh-~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~ 280 (578)
.|+++|+|-+... .+.+.+.|. .+++. ...+.+.|.+|+..++-|...-+
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~---------~~~~~i~v~~g~~~~~~v~v~~p 85 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQ---------GPENTITVPPGETREVPVFVTAP 85 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE----------ES--EEEE-TT-EEEEEEEEEE-
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEE---------CCCcceEECCCCEEEEEEEEEEC
Confidence 5889999999665 566777763 23321 12468889999988877766544
No 128
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=25.01 E-value=4.3e+02 Score=23.02 Aligned_cols=54 Identities=26% Similarity=0.521 Sum_probs=34.8
Q ss_pred CceEEEecCCEEEEEEEecC-CCCeeEE-eecccccCCcCCCC-CCCccccc-cCCCCeEEEEEEE
Q 008085 59 GPRIVAREGDRLIIKVVNHV-PNNISIH-WHGIRQLLSGWADG-PAYITQCP-IQTGQSYVYNFTI 120 (578)
Q Consensus 59 gP~i~~~~Gd~v~v~l~N~l-~~~~siH-~HG~~~~~~~~~DG-~~~~tq~~-i~PG~~~~Y~~~~ 120 (578)
|-+|.....+. |.+.|.| +-.+.|| |+-...-. ++. +| +.| +.+|+++...+.+
T Consensus 5 Gs~i~~~~~~~--V~f~N~lmpsG~~I~~W~S~~nyq---~~r~~P---~LPlLk~G~~Y~l~~~~ 62 (128)
T PF15432_consen 5 GSKISFHADGS--VYFENPLMPSGTVIHSWYSQTNYQ---ADRTVP---SLPLLKRGHTYQLKFNI 62 (128)
T ss_pred ccEEEEecCCe--EEEEccCCCCCCEeEEEECcceee---cCCcCC---CCCEecCCCEEEEEEEE
Confidence 66777777554 8899998 6677776 55553221 222 33 233 5789988877776
No 129
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=23.81 E-value=1.6e+02 Score=30.04 Aligned_cols=62 Identities=11% Similarity=0.151 Sum_probs=45.4
Q ss_pred eEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEeccc
Q 008085 214 KLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY 293 (578)
Q Consensus 214 ~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~~ 293 (578)
.+.+..|+.+||++-..... |.|.| |...-.+..-||.+-.+-+.++++ |.|...|..+
T Consensus 152 eL~iP~g~pV~f~lTS~DVi---------HSF~I---------P~Lg~K~damPG~~n~l~~~a~~~---G~Y~G~CaEy 210 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNSVM---------NSFFI---------PRLGSQIYAMAGMQTRLHLIANEP---GTYDGISASY 210 (315)
T ss_pred cEEEecCCEEEEEEEEchhh---------hhhhh---------hhhCCeeecCCCceeEEEEEcCCC---EEEEEEChhh
Confidence 47888999999988777642 33444 333445566688888888888888 9999999876
Q ss_pred cCC
Q 008085 294 ATG 296 (578)
Q Consensus 294 ~~~ 296 (578)
+..
T Consensus 211 CG~ 213 (315)
T PRK10525 211 SGP 213 (315)
T ss_pred cCc
Confidence 543
No 130
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.54 E-value=3.4e+02 Score=26.19 Aligned_cols=75 Identities=15% Similarity=0.285 Sum_probs=52.1
Q ss_pred eEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEec
Q 008085 454 KVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRAD 533 (578)
Q Consensus 454 ~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~ad 533 (578)
+.+.++.|+.+++.+...+ ..|.|.+-. .| ...|.+ ||-...+.|.++
T Consensus 140 n~lvlP~~~~v~~~~tS~D----ViHsf~iP~-------lg------------------~k~dai---PG~~~~~~~~~~ 187 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSAD----VLHSWAVPS-------LG------------------VKMDAV---PGRLNQTTFFIS 187 (229)
T ss_pred ceEEEecCeEEEEEEEECC----ccccccccc-------cC------------------ceeecC---CCceEEEEEEcC
Confidence 4678899999999998743 556554433 22 123433 788888899999
Q ss_pred CceeEEEEeechhhh-hccceEEEEEec
Q 008085 534 NPGVWFMHCHFEVHI-SWGLKMAWIVLN 560 (578)
Q Consensus 534 npG~w~~HCHil~H~-d~GMm~~~~V~~ 560 (578)
.||.+.--|--+--. +.-|-..++|.+
T Consensus 188 ~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (229)
T MTH00038 188 RTGLFYGQCSEICGANHSFMPIVIESVP 215 (229)
T ss_pred CCEEEEEEcccccCcCcCCCeEEEEEeC
Confidence 999999999877644 344555665554
No 131
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=23.35 E-value=96 Score=21.79 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=26.9
Q ss_pred ecCCcEEEEEEEecCceeEEEEeechhhhhc
Q 008085 520 VPSGGWVAIRFRADNPGVWFMHCHFEVHISW 550 (578)
Q Consensus 520 v~~~~~~~irf~adnpG~w~~HCHil~H~d~ 550 (578)
.+.|....++++...-..+=+||..+-|.+.
T Consensus 15 ~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 15 FPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred eCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 4568888899999999999999999999864
No 132
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.12 E-value=2.9e+02 Score=26.65 Aligned_cols=61 Identities=10% Similarity=0.060 Sum_probs=0.0
Q ss_pred eEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEeccc
Q 008085 214 KLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY 293 (578)
Q Consensus 214 ~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~~ 293 (578)
.+.+..|+.+|+++-.+... |.|.| |...-.+..-||..-.+.+.++++ |.|...|..+
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi---------Hsf~v---------P~lg~K~DavPG~~n~~~~~~~~~---G~y~g~CsE~ 199 (227)
T MTH00117 141 RMVIPMESPIRILITAEDVL---------HSWAV---------PSLGVKTDAVPGRLNQTSFITTRP---GVFYGQCSEI 199 (227)
T ss_pred eEEEecCceEEEEEEecchh---------hcccc---------cccCceeEecCCceEEEEEEEccc---ceEEEEeccc
Q ss_pred cC
Q 008085 294 AT 295 (578)
Q Consensus 294 ~~ 295 (578)
+.
T Consensus 200 CG 201 (227)
T MTH00117 200 CG 201 (227)
T ss_pred cc
No 133
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=22.78 E-value=3.5e+02 Score=23.45 Aligned_cols=53 Identities=21% Similarity=0.374 Sum_probs=38.6
Q ss_pred EEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCCC
Q 008085 225 LRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSY 281 (578)
Q Consensus 225 lRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~~ 281 (578)
|-|-|.+....+.+ .......+||.+++.+.-.-+.|.|-+..+++|+-+...
T Consensus 29 LSiRNtd~~~~i~i----~~v~Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV~e~D~~ 81 (125)
T PF11322_consen 29 LSIRNTDPTDPIYI----TSVDYYDTDGKLVRSYLDKPIYLKPLATTEFVVEESDTS 81 (125)
T ss_pred EEEEcCCCCCCEEE----EEEEEECCCCeEhHHhcCCCeEcCCCceEEEEEecccCC
Confidence 55556665444332 234556778999988888899999999999999877653
No 134
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=22.39 E-value=4.2e+02 Score=21.35 Aligned_cols=60 Identities=20% Similarity=0.342 Sum_probs=34.8
Q ss_pred EEecCcEE--EEEEEecCCCCeEEEEEc--C---ceEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCCCCCcceE
Q 008085 216 KVKPGKTY--LLRLINAALNDELFFSIA--N---HSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFL 287 (578)
Q Consensus 216 ~v~~G~~~--rlRliNa~~~~~~~~~i~--g---h~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~ 287 (578)
++..|++| .+.|.|.|... ..|++. . ..|.+ +| ..-.|.||+..++-|.+.....-|.|.
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p-~~f~v~~~~~~~~~~~v--------~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~ 81 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIP-ARFRVRQPESLSSFFSV--------EP---PSGFLAPGESVELEVTFSPTKPLGDYE 81 (102)
T ss_pred EEccCCEEEEEEEEEECCCCC-EEEEEEeCCcCCCCEEE--------EC---CCCEECCCCEEEEEEEEEeCCCCceEE
Confidence 34556655 48899999654 344443 2 11211 12 233699999999999988321125553
No 135
>TIGR03711 acc_sec_asp3 accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=22.04 E-value=4.7e+02 Score=23.01 Aligned_cols=56 Identities=20% Similarity=0.425 Sum_probs=36.1
Q ss_pred CCceEEEecCCEEEEEEEecC-CCCeeEE-eecccccCCcCCCCCCCccccc-cCCCCeEEEEEEE
Q 008085 58 PGPRIVAREGDRLIIKVVNHV-PNNISIH-WHGIRQLLSGWADGPAYITQCP-IQTGQSYVYNFTI 120 (578)
Q Consensus 58 pgP~i~~~~Gd~v~v~l~N~l-~~~~siH-~HG~~~~~~~~~DG~~~~tq~~-i~PG~~~~Y~~~~ 120 (578)
=|-+|...+.+. |.+.|.| +-.++|| |.-...-.. ..-+| +.| +..|+++...+.+
T Consensus 15 YGs~i~f~~~~~--V~feN~lMpsG~~I~~W~S~~nyq~--~r~~P---~LPlLk~g~~Y~i~~n~ 73 (135)
T TIGR03711 15 YGTTVKFLSDNE--VYFENPLMPSGETIHTWSSLTNYQA--ARTVP---SLPLLKRGQTYKLSLNA 73 (135)
T ss_pred cccEEEEccCCc--EEEeccCCCCCCEEEEEEeeecccc--cCCCC---CCcEEcCCCEEEEEEee
Confidence 488999977665 7899998 7778877 544432211 11233 344 5678887777776
No 136
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.35 E-value=2.9e+02 Score=26.72 Aligned_cols=61 Identities=7% Similarity=0.082 Sum_probs=41.2
Q ss_pred eEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEeccc
Q 008085 214 KLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY 293 (578)
Q Consensus 214 ~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~~ 293 (578)
.+.+..|+.+||++..... .+.|.+.+..+ .+..-||..-.+-+.++++ |.|...|..+
T Consensus 141 ~l~lP~~~~v~~~~tS~DV--iHsf~vP~lg~----------------k~da~PG~~n~~~~~~~~~---G~~~g~C~e~ 199 (228)
T MTH00076 141 RMVVPMESPIRMLITAEDV--LHSWAVPSLGI----------------KTDAIPGRLNQTSFIASRP---GVYYGQCSEI 199 (228)
T ss_pred eEEEecCCEEEEEEEeccc--cccccccccCc----------------eEEccCCcceeEEEEeCCc---EEEEEEChhh
Confidence 5788999999888876553 33344433222 2334478777777888887 9999999865
Q ss_pred cC
Q 008085 294 AT 295 (578)
Q Consensus 294 ~~ 295 (578)
+.
T Consensus 200 CG 201 (228)
T MTH00076 200 CG 201 (228)
T ss_pred cC
Confidence 43
No 137
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.32 E-value=3.3e+02 Score=26.21 Aligned_cols=77 Identities=18% Similarity=0.341 Sum_probs=53.4
Q ss_pred ceEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEe
Q 008085 453 TKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRA 532 (578)
Q Consensus 453 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~a 532 (578)
.+.+.++.|+.|++.+... +..|. |+|-+.+ ..+|.+ ||-...+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~tS~----DViHs-------f~vP~l~------------------~K~Dai---PG~~n~~~~~~ 186 (226)
T MTH00139 139 DNRLVLPYKSNIRALITAA----DVLHS-------WTVPSLG------------------VKIDAV---PGRLNQVGFFI 186 (226)
T ss_pred CceEEEecCCEEEEEEecC----ccccc-------eeccccC------------------ccccCC---CCcEEEEEEEc
Confidence 3567889999999999874 35554 4443332 134554 67888899999
Q ss_pred cCceeEEEEeechhhh-hccceEEEEEecC
Q 008085 533 DNPGVWFMHCHFEVHI-SWGLKMAWIVLNG 561 (578)
Q Consensus 533 dnpG~w~~HCHil~H~-d~GMm~~~~V~~~ 561 (578)
+.||.+.--|--+-=. +.-|-..++|.+.
T Consensus 187 ~~~G~y~g~CsE~CG~~Hs~M~~~v~vv~~ 216 (226)
T MTH00139 187 NRPGVFYGQCSEICGANHSFMPIVVEAISP 216 (226)
T ss_pred CCCEEEEEEChhhcCcCcCCCeEEEEEeCH
Confidence 9999999999765422 4456666766553
No 138
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=21.16 E-value=79 Score=25.08 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=24.6
Q ss_pred eeeEEEEEcCCCCCceEEEecCCEEEEE
Q 008085 46 HTKSIITVNGQFPGPRIVAREGDRLIIK 73 (578)
Q Consensus 46 ~~~~~~~~NG~~pgP~i~~~~Gd~v~v~ 73 (578)
.+...+.+||..-++.-+++.||+|.|.
T Consensus 47 tEV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 47 TEVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred HHeEEEEECCEECCCcccCCCCCEEEEE
Confidence 3677899999999999999999998874
No 139
>COG3241 Azurin [Energy production and conversion]
Probab=21.10 E-value=1.1e+02 Score=26.14 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=30.4
Q ss_pred CCCCCCce----EEeEEEECCCceEEEEEEeCCCCCCcceEEEec
Q 008085 251 DAIYIKSF----QTDILLITPGQTTNILLKAKPSYPNATFLMSAR 291 (578)
Q Consensus 251 DG~~~~P~----~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~ 291 (578)
|-.|++|. ...+-.|+.|||-++-++..+-..|-.|++.|.
T Consensus 91 d~dYvkpdD~RViAHTklIGgGE~~S~Tfd~~kL~~g~~Y~FfCt 135 (151)
T COG3241 91 DTDYVKPDDARVIAHTKLIGGGEETSLTFDPAKLADGVEYKFFCT 135 (151)
T ss_pred ccccCCCCCcceEEEeeeecCCccceEecCHHHhcCCceEEEEEe
Confidence 34556553 335679999999999999887654458999886
No 140
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.76 E-value=3.1e+02 Score=26.47 Aligned_cols=61 Identities=15% Similarity=0.130 Sum_probs=0.0
Q ss_pred eEEEecCcEEEEEEEecCCCCeEEEEEcCceEEEEEeCCCCCCceEEeEEEECCCceEEEEEEeCCCCCCcceEEEeccc
Q 008085 214 KLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPY 293 (578)
Q Consensus 214 ~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGeR~dvlv~~~~~~~~g~y~l~~~~~ 293 (578)
.+.++.|+.+||++-.+. .+ |.|.| |...-.+..-||..-.+-+.++++ |.|..+|..+
T Consensus 141 ~l~lP~~~~v~~~~tS~D---Vi------Hsf~v---------p~l~~k~davPG~~~~~~~~~~~~---G~y~g~Cse~ 199 (227)
T MTH00154 141 RLVLPMNTQIRILITAAD---VI------HSWTV---------PSLGVKVDAVPGRLNQLNFLINRP---GLFFGQCSEI 199 (227)
T ss_pred eEEEecCCEEEEEEEcCc---hh------hheec---------cccCCeeecCCCceEEEEEEEcCc---eEEEEEeech
Q ss_pred cC
Q 008085 294 AT 295 (578)
Q Consensus 294 ~~ 295 (578)
+.
T Consensus 200 CG 201 (227)
T MTH00154 200 CG 201 (227)
T ss_pred hC
No 141
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=20.63 E-value=3e+02 Score=29.27 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=26.3
Q ss_pred eeecCCcEEEEEEEecCceeEEEEe----echhhhhccce
Q 008085 518 VGVPSGGWVAIRFRADNPGVWFMHC----HFEVHISWGLK 553 (578)
Q Consensus 518 v~v~~~~~~~irf~adnpG~w~~HC----Hil~H~d~GMm 553 (578)
+.+.|....++-|.+|.||.|++-| |.+.-|..|=|
T Consensus 594 ~~v~pq~tasvtf~a~kpgv~w~ycs~fchalh~em~~rm 633 (637)
T COG4263 594 MEVKPQRTASVTFYADKPGVAWYYCSWFCHALHMEMAGRM 633 (637)
T ss_pred EEEccCCceEEEEEccCCeeeehhhhhHHHHHHHhhccce
Confidence 4567888889999999999997665 55544444443
No 142
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.53 E-value=4e+02 Score=25.67 Aligned_cols=76 Identities=16% Similarity=0.279 Sum_probs=53.1
Q ss_pred eEEEecCCCEEEEEEecCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeecCCcEEEEEEEec
Q 008085 454 KVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRAD 533 (578)
Q Consensus 454 ~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v~~~~~~~irf~ad 533 (578)
+.+.++.|+.+++.+...+ ..|. |+|-+.| ...|. -||....+.|.++
T Consensus 140 n~l~lP~~~~v~~~~tS~D----ViHs-------f~vP~lg------------------~k~da---~PG~~n~~~~~~~ 187 (228)
T MTH00076 140 NRMVVPMESPIRMLITAED----VLHS-------WAVPSLG------------------IKTDA---IPGRLNQTSFIAS 187 (228)
T ss_pred ceEEEecCCEEEEEEEecc----cccc-------ccccccC------------------ceEEc---cCCcceeEEEEeC
Confidence 4678899999999998743 4444 5553332 12333 3777788899999
Q ss_pred CceeEEEEeechhhh-hccceEEEEEecC
Q 008085 534 NPGVWFMHCHFEVHI-SWGLKMAWIVLNG 561 (578)
Q Consensus 534 npG~w~~HCHil~H~-d~GMm~~~~V~~~ 561 (578)
.||.+---|.-+-.. +..|-..++|.+.
T Consensus 188 ~~G~~~g~C~e~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00076 188 RPGVYYGQCSEICGANHSFMPIVVEATPL 216 (228)
T ss_pred CcEEEEEEChhhcCccccCCceEEEEeCH
Confidence 999999999886544 4567677776653
No 143
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic. This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot
Probab=20.12 E-value=46 Score=28.32 Aligned_cols=8 Identities=25% Similarity=0.638 Sum_probs=6.6
Q ss_pred eEEecCcc
Q 008085 127 LFWHAHIS 134 (578)
Q Consensus 127 ~wYH~H~~ 134 (578)
=|||||..
T Consensus 69 G~YHSHP~ 76 (119)
T cd08058 69 GWYHSHPT 76 (119)
T ss_pred EEEecCCC
Confidence 39999984
Done!