BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008086
(578 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 251 bits (641), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 153/499 (30%), Positives = 249/499 (49%), Gaps = 58/499 (11%)
Query: 92 VRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYNWSG 151
V L+V LPL V+ N +GV + VWWG+ E + +Y+WS
Sbjct: 13 VSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSA 72
Query: 152 YLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQF 206
Y + ++V+K GLK+ + FH IP+P W+ QIG+ IFYT+++G +
Sbjct: 73 YRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFYTNRAGNRN 132
Query: 207 KGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITVRSFDFKQCQVHTISDL 266
+ LSL VD+ + G+T +++Y++F ESF+ + F+
Sbjct: 133 QEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAG------------------- 173
Query: 267 HLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNL 326
D+V I +G G GELRYPS+ + PG+GEFQC D+ M+
Sbjct: 174 ------DIVD---------IEVGCGAAGELRYPSYPE-TQGWVFPGIGEFQCYDKYMVAD 217
Query: 327 LQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISH 386
++ + GN W + G A +Y+++P+ FF+ NG ++++ G FFL+WYS++LI H
Sbjct: 218 WKEAVKQAGNADWEMPG-KGAGTYNDTPDKTEFFRPNG-TYKTDMGKFFLTWYSNKLIIH 275
Query: 387 GNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFA 446
G+ +L A+ F V+I K+ IH WY SH +ELTAG YN A RDGY +A M A
Sbjct: 276 GDQVLEEANKVFVGLRVNIAAKVSGIHWWYNHVSHAAELTAGFYNVAGRDGYRPIARMLA 335
Query: 447 KNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQ 506
++ + +++ D QP E+ S+P+ L+ Q+ ++ K ++V+G+N+ + Q
Sbjct: 336 RHHATLNFTCLEMRDSEQPAEAKSAPQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQ 395
Query: 507 MKKNLFGENVVDL----------FTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGDDLP 556
M L N V+L TY R+ ++F F KFV+ ++H D P
Sbjct: 396 MLLKL-RPNGVNLNGPPKLKMSGLTYLRLSDDLLQTDNFELFKKFVK-----KMHADLDP 449
Query: 557 VEEEVTESVHTNANTNIQV 575
++ +V +N+ I +
Sbjct: 450 SPNAISPAVLERSNSAITI 468
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 249 bits (635), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 147/479 (30%), Positives = 239/479 (49%), Gaps = 57/479 (11%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITVRSFDFKQCQVHTI 263
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + + +
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLII------------- 175
Query: 264 SDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNM 323
I +GLGP GELRYPS+ + ++ + PG+GEFQC D+ +
Sbjct: 176 ---------------------DIEVGLGPAGELRYPSYPQ-SQGWEFPGIGEFQCYDKYL 213
Query: 324 LNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQL 383
+ G+P W L P DA Y++ P S FFK NG ++ + G FFL+WYS++L
Sbjct: 214 KADFKAAVARAGHPEWEL--PDDAGKYNDVPESTGFFKSNG-TYVTEKGKFFLTWYSNKL 270
Query: 384 ISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAE 443
++HG+ +L A+ F V + K+ IH WYK +H +ELTAG YN RDGY +A
Sbjct: 271 LNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIAR 330
Query: 444 MFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGG 503
M +++ + +++ D QP ++ S P+ L+ Q+ + + + V+GQN+
Sbjct: 331 MLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGQNALPRYDATA 390
Query: 504 FEQMKKNLFGENV-------VDLF--TYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGD 553
+ Q+ N + V + +F TY R+ +F F KFV L++H D
Sbjct: 391 YNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 248 bits (634), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 146/479 (30%), Positives = 239/479 (49%), Gaps = 57/479 (11%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITVRSFDFKQCQVHTI 263
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + + +
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLII------------- 175
Query: 264 SDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNM 323
I +GLGP GELRYPS+ + ++ + PG+GEFQC D+ +
Sbjct: 176 ---------------------DIEVGLGPAGELRYPSYPQ-SQGWEFPGIGEFQCYDKYL 213
Query: 324 LNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQL 383
+ G+P W L P DA Y++ P S FFK NG ++ + G FFL+WYS++L
Sbjct: 214 KADFKAAVARAGHPEWEL--PDDAGKYNDVPESTGFFKSNG-TYVTEKGKFFLTWYSNKL 270
Query: 384 ISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAE 443
++HG+ +L A+ F V + K+ IH WYK +H +ELTAG YN RDGY +A
Sbjct: 271 LNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIAR 330
Query: 444 MFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGG 503
M +++ + +++ D QP ++ S P+ L+ Q+ + + + V+G+N+
Sbjct: 331 MLSRHHAILTFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATA 390
Query: 504 FEQMKKNLFGENV-------VDLF--TYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGD 553
+ Q+ N + V + +F TY R+ +F F KFV L++H D
Sbjct: 391 YNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
Length = 500
Score = 248 bits (633), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 151/475 (31%), Positives = 229/475 (48%), Gaps = 64/475 (13%)
Query: 92 VRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYNWSG 151
V+++V LPLD VS N V+GV + VWWG+ E + Y+WS
Sbjct: 6 VQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSA 65
Query: 152 YLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQF 206
Y + E+V+K GLKL + FH IP+P WV +G IFYTD G +
Sbjct: 66 YKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRN 125
Query: 207 KGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITVRSFDFKQCQVHTISDL 266
L+L VD+ P+ G++ +Q+Y ++ SF+ + K F+ + V
Sbjct: 126 IEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIV---------------- 169
Query: 267 HLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNL 326
I +GLGP GELRYPS+ + + PG+GEF C D+ +
Sbjct: 170 ------------------DIEVGLGPAGELRYPSYPQ-SHGWSFPGIGEFICYDKYLQAD 210
Query: 327 LQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISH 386
+ A A G+P W P+DA Y+++P FF+DNG ++ S G FFL+WYS+ LI H
Sbjct: 211 FKAAAAAVGHPEWEF--PNDAGQYNDTPERTQFFRDNG-TYLSEKGRFFLAWYSNNLIKH 267
Query: 387 GNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFA 446
G+ +L A+ F V + KI +H WYK SH +ELTAG YN RDGY +A M
Sbjct: 268 GDRILDEANKVFLGYKVQLAIKIAGVHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLK 327
Query: 447 KNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQ 506
++ + ++ D QP ++ S+PE L+ Q+ +A + G+ VS +N+ P +
Sbjct: 328 RHRASINFTCAEMRDSEQPPDAMSAPEELVQQVLSAGWREGLNVSCENALPRYDPTAYNT 387
Query: 507 MKKN---------------LFGENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLN 546
+ +N LFG FTY R+ +++ +F FV ++
Sbjct: 388 ILRNARPHGINQSGPPEHKLFG------FTYLRLSNQLVEGQNYVNFKTFVDRMH 436
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 248 bits (633), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 146/479 (30%), Positives = 239/479 (49%), Gaps = 57/479 (11%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVTVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITVRSFDFKQCQVHTI 263
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + + +
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLII------------- 175
Query: 264 SDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNM 323
I +GLGP GELRYPS+ + ++ + PG+GEFQC D+ +
Sbjct: 176 ---------------------DIEVGLGPAGELRYPSYPQ-SQGWEFPGIGEFQCYDKYL 213
Query: 324 LNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQL 383
+ G+P W L P DA Y++ P S FFK NG ++ + G FFL+WYS++L
Sbjct: 214 KADFKAAVARAGHPEWEL--PDDAGKYNDVPESTGFFKSNG-TYVTEKGKFFLTWYSNKL 270
Query: 384 ISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAE 443
++HG+ +L A+ F V + K+ IH WYK +H +ELTAG YN RDGY +A
Sbjct: 271 LNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIAR 330
Query: 444 MFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGG 503
M +++ + +++ D QP ++ S P+ L+ Q+ + + + V+G+N+
Sbjct: 331 MLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATA 390
Query: 504 FEQMKKNLFGENV-------VDLF--TYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGD 553
+ Q+ N + V + +F TY R+ +F F KFV L++H D
Sbjct: 391 YNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta- Amylase
Length = 495
Score = 248 bits (632), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 146/479 (30%), Positives = 239/479 (49%), Gaps = 57/479 (11%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITVRSFDFKQCQVHTI 263
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + + +
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLII------------- 175
Query: 264 SDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNM 323
I +GLGP GELRYPS+ + ++ + PG+GEFQC D+ +
Sbjct: 176 ---------------------DIEVGLGPAGELRYPSYPQ-SQGWEFPGIGEFQCYDKYL 213
Query: 324 LNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQL 383
+ G+P W L P DA Y++ P S FFK NG ++ + G FFL+WYS++L
Sbjct: 214 KADFKAAVARAGHPEWEL--PDDAGKYNDVPESTGFFKSNG-TYVTEKGKFFLTWYSNKL 270
Query: 384 ISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAE 443
++HG+ +L A+ F V + K+ IH WYK +H +ELTAG YN RDGY +A
Sbjct: 271 LNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIAR 330
Query: 444 MFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGG 503
M +++ + +++ D QP ++ S P+ L+ Q+ + + + V+G+N+
Sbjct: 331 MLSRHHAILNFACLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATA 390
Query: 504 FEQMKKNLFGENV-------VDLF--TYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGD 553
+ Q+ N + V + +F TY R+ +F F KFV L++H D
Sbjct: 391 YNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 248 bits (632), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 146/479 (30%), Positives = 239/479 (49%), Gaps = 57/479 (11%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITVRSFDFKQCQVHTI 263
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + + +
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLII------------- 175
Query: 264 SDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNM 323
I +GLGP GELRYPS+ + ++ + PG+GEFQC D+ +
Sbjct: 176 ---------------------DIEVGLGPAGELRYPSYPQ-SQGWEFPGIGEFQCYDKYL 213
Query: 324 LNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQL 383
+ G+P W L P DA Y++ P S FFK NG ++ + G FFL+WYS++L
Sbjct: 214 KADFKAAVARAGHPEWEL--PDDAGKYNDVPESTGFFKSNG-TYVTEKGKFFLTWYSNKL 270
Query: 384 ISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAE 443
++HG+ +L A+ F V + K+ IH WYK +H +ELTAG YN RDGY +A
Sbjct: 271 LNHGDQILDEANKAFLGXKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIAR 330
Query: 444 MFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGG 503
M +++ + +++ D QP ++ S P+ L+ Q+ + + + V+G+N+
Sbjct: 331 MLSRHHAILNFSCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATA 390
Query: 504 FEQMKKNLFGENV-------VDLF--TYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGD 553
+ Q+ N + V + +F TY R+ +F F KFV L++H D
Sbjct: 391 YNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 248 bits (632), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 146/479 (30%), Positives = 239/479 (49%), Gaps = 57/479 (11%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITVRSFDFKQCQVHTI 263
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + + +
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLII------------- 175
Query: 264 SDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNM 323
I +GLGP GELRYPS+ + ++ + PG+GEFQC D+ +
Sbjct: 176 ---------------------DIEVGLGPAGELRYPSYPQ-SQGWEFPGIGEFQCYDKYL 213
Query: 324 LNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQL 383
+ G+P W L P DA Y++ P S FFK NG ++ + G FFL+WYS++L
Sbjct: 214 KADFKAAVARAGHPEWEL--PDDAGKYNDVPESTGFFKSNG-TYVTEKGKFFLTWYSNKL 270
Query: 384 ISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAE 443
++HG+ +L A+ F V + K+ IH WYK +H +ELTAG YN RDGY +A
Sbjct: 271 LNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIAR 330
Query: 444 MFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGG 503
M +++ + +++ D QP ++ S P+ L+ Q+ + + + V+G+N+
Sbjct: 331 MLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATA 390
Query: 504 FEQMKKNLFGENV-------VDLF--TYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGD 553
+ Q+ N + V + +F TY R+ +F F KFV L++H D
Sbjct: 391 YNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 247 bits (630), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 146/479 (30%), Positives = 239/479 (49%), Gaps = 57/479 (11%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITVRSFDFKQCQVHTI 263
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + + +
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLII------------- 175
Query: 264 SDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNM 323
I +GLGP GELRYPS+ + ++ + PG+GEFQC D+ +
Sbjct: 176 ---------------------DIEVGLGPAGELRYPSYPQ-SQGWEFPGIGEFQCYDKYL 213
Query: 324 LNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQL 383
+ G+P W L P DA Y++ P S FFK NG ++ + G FFL+WYS++L
Sbjct: 214 KADFKAAVARAGHPEWEL--PDDAGKYNDVPESTGFFKSNG-TYVTEKGKFFLTWYSNKL 270
Query: 384 ISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAE 443
++HG+ +L A+ F V + K+ IH WYK +H +ELTAG YN RDGY +A
Sbjct: 271 LNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIAR 330
Query: 444 MFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGG 503
M +++ + +++ D QP ++ S P+ L+ Q+ + + + V+G+N+
Sbjct: 331 MLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREYIRVAGENALPRYDATA 390
Query: 504 FEQMKKNLFGENV-------VDLF--TYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGD 553
+ Q+ N + V + +F TY R+ +F F KFV L++H D
Sbjct: 391 YNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 247 bits (630), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 146/479 (30%), Positives = 239/479 (49%), Gaps = 57/479 (11%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITVRSFDFKQCQVHTI 263
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + + +
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLII------------- 175
Query: 264 SDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNM 323
I +GLGP GELRYPS+ + ++ + PG+GEFQC D+ +
Sbjct: 176 ---------------------DIEVGLGPAGELRYPSYPQ-SQGWEFPGIGEFQCYDKYL 213
Query: 324 LNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQL 383
+ G+P W L P DA Y++ P S FFK NG ++ + G FFL+WYS++L
Sbjct: 214 KADFKAAVARAGHPEWEL--PDDAGKYNDVPESTGFFKSNG-TYVTEKGKFFLTWYSNKL 270
Query: 384 ISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAE 443
++HG+ +L A+ F V + K+ IH WYK +H +ELTAG YN RDGY +A
Sbjct: 271 LNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIAR 330
Query: 444 MFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGG 503
M +++ + +++ D QP ++ S P+ L+ Q+ + + + V+G+N+
Sbjct: 331 MLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREYIRVAGENALPRYDATA 390
Query: 504 FEQMKKNLFGENV-------VDLF--TYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGD 553
+ Q+ N + V + +F TY R+ +F F KFV L++H D
Sbjct: 391 YNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 5.4
pdb|1Q6F|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 7.1
Length = 495
Score = 247 bits (630), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 146/479 (30%), Positives = 239/479 (49%), Gaps = 57/479 (11%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITVRSFDFKQCQVHTI 263
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + + +
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLII------------- 175
Query: 264 SDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNM 323
I +GLGP GELRYPS+ + ++ + PG+GEFQC D+ +
Sbjct: 176 ---------------------DIYVGLGPAGELRYPSYPQ-SQGWEFPGIGEFQCYDKYL 213
Query: 324 LNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQL 383
+ G+P W L P DA Y++ P S FFK NG ++ + G FFL+WYS++L
Sbjct: 214 KADFKAAVARAGHPEWEL--PDDAGKYNDVPESTGFFKSNG-TYVTEKGKFFLTWYSNKL 270
Query: 384 ISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAE 443
++HG+ +L A+ F V + K+ IH WYK +H +ELTAG YN RDGY +A
Sbjct: 271 LNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIAR 330
Query: 444 MFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGG 503
M +++ + +++ D QP ++ S P+ L+ Q+ + + + V+G+N+
Sbjct: 331 MLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATA 390
Query: 504 FEQMKKNLFGENV-------VDLF--TYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGD 553
+ Q+ N + V + +F TY R+ +F F KFV L++H D
Sbjct: 391 YNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 247 bits (630), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 146/479 (30%), Positives = 239/479 (49%), Gaps = 57/479 (11%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITVRSFDFKQCQVHTI 263
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + + +
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLII------------- 175
Query: 264 SDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNM 323
I +GLGP GELRYPS+ + ++ + PG+GEFQC D+ +
Sbjct: 176 ---------------------DIEVGLGPAGELRYPSYPQ-SQGWEFPGIGEFQCYDKYL 213
Query: 324 LNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQL 383
+ G+P W L P DA Y++ P S FFK NG ++ + G FFL+WYS++L
Sbjct: 214 KADFKAAVARAGHPEWEL--PDDAGKYNDVPESTGFFKSNG-TYVTEKGKFFLTWYSNKL 270
Query: 384 ISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAE 443
++HG+ +L A+ F V + K+ IH WYK +H +ELTAG YN RDGY +A
Sbjct: 271 LNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIAR 330
Query: 444 MFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGG 503
M +++ + +++ D QP ++ S P+ L+ Q+ + + + V+G+N+
Sbjct: 331 MLSRHHAILNFVCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATA 390
Query: 504 FEQMKKNLFGENV-------VDLF--TYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGD 553
+ Q+ N + V + +F TY R+ +F F KFV L++H D
Sbjct: 391 YNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 246 bits (629), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 145/479 (30%), Positives = 239/479 (49%), Gaps = 57/479 (11%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITVRSFDFKQCQVHTI 263
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + + +
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLII------------- 175
Query: 264 SDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNM 323
I +GLGP G+LRYPS+ + ++ + PG+GEFQC D+ +
Sbjct: 176 ---------------------DIEVGLGPAGQLRYPSYPQ-SQGWEFPGIGEFQCYDKYL 213
Query: 324 LNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQL 383
+ G+P W L P DA Y++ P S FFK NG ++ + G FFL+WYS++L
Sbjct: 214 KADFKAAVARAGHPEWEL--PDDAGKYNDVPESTGFFKSNG-TYVTEKGKFFLTWYSNKL 270
Query: 384 ISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAE 443
++HG+ +L A+ F V + K+ IH WYK +H +ELTAG YN RDGY +A
Sbjct: 271 LNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIAR 330
Query: 444 MFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGG 503
M +++ + +++ D QP ++ S P+ L+ Q+ + + + V+G+N+
Sbjct: 331 MLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATA 390
Query: 504 FEQMKKNLFGENV-------VDLF--TYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGD 553
+ Q+ N + V + +F TY R+ +F F KFV L++H D
Sbjct: 391 YNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 244 bits (622), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 145/479 (30%), Positives = 238/479 (49%), Gaps = 57/479 (11%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITVRSFDFKQCQVHTI 263
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + + +
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLII------------- 175
Query: 264 SDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNM 323
I +GLGP GELRYPS+ + ++ + P +GEFQC D+ +
Sbjct: 176 ---------------------DIEVGLGPAGELRYPSYPQ-SQGWEFPRIGEFQCYDKYL 213
Query: 324 LNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQL 383
+ G+P W L P DA Y++ P S FFK NG ++ + G FFL+WYS++L
Sbjct: 214 KADFKAAVARAGHPEWEL--PDDAGKYNDVPESTGFFKSNG-TYVTEKGKFFLTWYSNKL 270
Query: 384 ISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAE 443
++HG+ +L A+ F V + K+ IH WYK +H +ELTAG YN RDGY +A
Sbjct: 271 LNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIAR 330
Query: 444 MFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGG 503
M +++ + +++ D QP ++ S P+ L+ Q+ + + + V+G+N+
Sbjct: 331 MLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATA 390
Query: 504 FEQMKKNLFGENV-------VDLF--TYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGD 553
+ Q+ N + V + +F TY R+ +F F KFV L++H D
Sbjct: 391 YNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 243 bits (621), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 145/479 (30%), Positives = 238/479 (49%), Gaps = 57/479 (11%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + VWWG+ E + +Y+
Sbjct: 5 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYD 64
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 65 WRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 124
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITVRSFDFKQCQVHTI 263
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + + +
Sbjct: 125 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLII------------- 171
Query: 264 SDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNM 323
I +GLGP GELRYPS+ + ++ + P +GEFQC D+ +
Sbjct: 172 ---------------------DIEVGLGPAGELRYPSYPQ-SQGWEFPRIGEFQCYDKYL 209
Query: 324 LNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQL 383
+ G+P W L P DA Y++ P S FFK NG ++ + G FFL+WYS++L
Sbjct: 210 KADFKAAVARAGHPEWEL--PDDAGKYNDVPESTGFFKSNG-TYVTEKGKFFLTWYSNKL 266
Query: 384 ISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAE 443
++HG+ +L A+ F V + K+ IH WYK +H +ELTAG YN RDGY +A
Sbjct: 267 LNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIAR 326
Query: 444 MFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGG 503
M +++ + +++ D QP ++ S P+ L+ Q+ + + + V+G+N+
Sbjct: 327 MLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATA 386
Query: 504 FEQMKKNLFGENV-------VDLF--TYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGD 553
+ Q+ N + V + +F TY R+ +F F KFV L++H D
Sbjct: 387 YNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFV-----LKMHAD 440
>pdb|2XFF|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Acarbose
pdb|2XFR|A Chain A, Crystal Structure Of Barley Beta-Amylase At Atomic
Resolution
pdb|2XFY|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Alpha-Cyclodextrin
pdb|2XG9|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
4-O- Alpha-D-Glucopyranosylmoranoline
pdb|2XGB|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
2,3- Epoxypropyl-Alpha-D-Glucopyranoside
pdb|2XGI|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
3,4- Epoxybutyl Alpha-D-Glucopyranoside
Length = 535
Score = 242 bits (618), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 148/475 (31%), Positives = 227/475 (47%), Gaps = 64/475 (13%)
Query: 92 VRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYNWSG 151
V+++V LPLD VS N V+GV + VWWG+ E + Y+WS
Sbjct: 10 VQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSA 69
Query: 152 YLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQF 206
Y + E+V+K GLKL + FH IP+P WV +G IFYTD G +
Sbjct: 70 YKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRN 129
Query: 207 KGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITVRSFDFKQCQVHTISDL 266
L+L VD+ P+ G++ +Q+Y ++ SF+ + K F+ + V
Sbjct: 130 IEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKEFLDAGVIVD--------------- 174
Query: 267 HLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNL 326
I +GLGP GE+RYPS+ + + PG+GEF C D+ +
Sbjct: 175 -------------------IEVGLGPAGEMRYPSYPQ-SHGWSFPGIGEFICYDKYLQAD 214
Query: 327 LQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISH 386
+ A A G+P W P+D Y+++P FF+DNG ++ S G FFL+WYS+ LI H
Sbjct: 215 FKAAAAAVGHPEWEF--PNDVGQYNDTPERTQFFRDNG-TYLSEKGRFFLAWYSNNLIKH 271
Query: 387 GNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFA 446
G+ +L A+ F V + KI IH WYK SH +ELTAG YN RDGY +A M
Sbjct: 272 GDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLK 331
Query: 447 KNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQ 506
++ + ++ D Q ++ S+PE L+ Q+ +A + G+ V+ +N+ P +
Sbjct: 332 RHRASINFTCAEMRDSEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNT 391
Query: 507 MKKN---------------LFGENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLN 546
+ +N LFG FTY R+ +++ +F FV ++
Sbjct: 392 ILRNARPHGINQSGPPEHKLFG------FTYLRLSNQLVEGQNYANFKTFVDRMH 440
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 242 bits (617), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 145/479 (30%), Positives = 238/479 (49%), Gaps = 57/479 (11%)
Query: 89 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYN 148
L+ V ++V LPL V+ N V+GV + V WG+ E + +Y+
Sbjct: 9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVRWGIIELKGPKQYD 68
Query: 149 WSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSG 203
W Y ++ ++V++ GL L + FH IP+P WV IGES IFYT++SG
Sbjct: 69 WRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSG 128
Query: 204 QQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITVRSFDFKQCQVHTI 263
+ K L++ VD+ P+ G+T I++Y ++ +SF+ + F+ + + +
Sbjct: 129 TRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLII------------- 175
Query: 264 SDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNM 323
I +GLGP GELRYPS+ + ++ + PG+GEFQC D+ +
Sbjct: 176 ---------------------DIEVGLGPAGELRYPSYPQ-SQGWEFPGIGEFQCYDKYL 213
Query: 324 LNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQL 383
+ G+P W L P DA Y++ P S FFK NG ++ + G FFL+WYS++L
Sbjct: 214 KADFKAAVARAGHPEWEL--PDDAGKYNDVPESTGFFKSNG-TYVTEKGKFFLTWYSNKL 270
Query: 384 ISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAE 443
++HG+ +L A+ F V + K+ IH WYK +H +ELTAG YN RDGY +A
Sbjct: 271 LNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIAR 330
Query: 444 MFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGG 503
M +++ + +++ D QP ++ S P+ L+ Q+ + + + V+G+N+
Sbjct: 331 MLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATA 390
Query: 504 FEQMKKNLFGENV-------VDLF--TYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGD 553
+ Q+ N + V + +F TY R+ +F F KFV L++H D
Sbjct: 391 YNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFV-----LKMHAD 444
>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase
From Paenibacillus Polymyxa
Length = 419
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 103/400 (25%), Positives = 156/400 (39%), Gaps = 73/400 (18%)
Query: 127 VEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIP 181
V + VWWG E +++WS Y A V++ GLK + H IP
Sbjct: 35 VYAITTDVWWGYVESAGDNQFDWSYYKTYANAVKEAGLKWVPIISTHKCGGNVGDDCNIP 94
Query: 182 LPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFK 241
LP W+S G S + + D+SG S A+ L GK ++Y F E+F + +K
Sbjct: 95 LPSWLSSKG-SADEMQFKDESGY----ANSEALSPLWSGTGKQYDELYASFAENF-AGYK 148
Query: 242 PFMGTTITVRSFDFKQCQVHTISDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSH 301
+ I + GP GELRYPS+
Sbjct: 149 SI---------------------------------------IPKIYLSGGPSGELRYPSY 169
Query: 302 HRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANG------NPLWGLRGPHDAPSYDESPN 355
+ A S PG G+FQ N + N WG + + S P
Sbjct: 170 YPAAGWS-YPGRGKFQAYTETAKNAFRTAMNDKYGSLDKINAAWGTK--LTSLSQINPPT 226
Query: 356 SNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGET-GVSIYGKIPLIHS 414
F NGG + S YG FLSWY S L H + + A F GV I KI +H
Sbjct: 227 DGDGFYTNGG-YNSAYGKDFLSWYQSVLEKHLGVIGAAAHKNFDSVFGVRIGAKISGLH- 284
Query: 415 WYKTR---SHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSS 471
W H +E G Y+ Y + + F + +++SD ++S
Sbjct: 285 WQMNNPAMPHGTEQAGGYYD------YNRLIQKFKDADLDLTFTCLEMSDSGTA-PNYSL 337
Query: 472 PESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNL 511
P +L+ + + N GV ++G+N+ TG GF+++++ +
Sbjct: 338 PSTLVDTVSSIANAKGVRLNGENALPTGGS-GFQKIEEKI 376
>pdb|1VEN|A Chain A, Crystal Structure Analysis Of Y164eMALTOSE OF BACILUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 95/411 (23%), Positives = 167/411 (40%), Gaps = 72/411 (17%)
Query: 129 GVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLP 183
+ + WWG EK ++++S A+ V+ G+K+ + H +P+P
Sbjct: 45 AITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIP 104
Query: 184 DWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPF 243
WV +S S+++ ++G K L+ D+ + Y E +F ++ KP+
Sbjct: 105 SWVWN-QKSDDSLYFKSETGTVNKETLNPLASDVIRKE-------YGELYTAFAAAMKPY 156
Query: 244 MGTTITVRSFDFKQCQVHTISDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHR 303
DV++ ++ GP GELRYPS +
Sbjct: 157 ----------------------------KDVIAKIELSG--------GPAGELRYPS-YT 179
Query: 304 LAKSSKIPGVGEFQCC-----DRNMLNLLQQHAEANG-NPLWGLRGPHDAPSYDESPNSN 357
+ + P G+FQ + L +L ++ N N WG + + P+
Sbjct: 180 TSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAIL--PPSDG 237
Query: 358 SFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGET-GVSIYGKIPLIHSWY 416
F NG + S YG +L WY L +H + LA + F T V I KI +H Y
Sbjct: 238 EQFLMNG--YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQY 295
Query: 417 K--TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPES 474
T H +E AG YN Y+ + + F + ++++D+ E +S P++
Sbjct: 296 NNPTIPHGAEKPAG-YND-----YSHLLDAFKSAKLDVTFTCLEMTDKGSYPE-YSMPKT 348
Query: 475 LLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVV--DLFTYQ 523
L+ I T N+ G+ ++G+N+ G ++++ + F N L YQ
Sbjct: 349 LVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYNFAGFTLLRYQ 399
>pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form
pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed With Maltose
pdb|5BCA|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|1J18|A Chain A, Crystal Structure Of A Beta-Amylase From Bacillus Cereus
Var. Mycoides Cocrystallized With Maltose
pdb|1J0Y|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Z|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J10|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J11|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J12|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1VEM|A Chain A, Crystal Structure Analysis Of Bacillus Cereus Beta-amylase
At The Optimum Ph (6.5)
Length = 516
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 95/411 (23%), Positives = 165/411 (40%), Gaps = 72/411 (17%)
Query: 129 GVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLP 183
+ + WWG EK ++++S A+ V+ G+K+ + H +P+P
Sbjct: 45 AITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIP 104
Query: 184 DWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPF 243
WV +S S+++ ++G K L+ D+ + Y E +F ++ KP+
Sbjct: 105 SWVWN-QKSDDSLYFKSETGTVNKETLNPLASDVIRKE-------YGELYTAFAAAMKPY 156
Query: 244 MGTTITVRSFDFKQCQVHTISDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHR 303
D + I + GP GELRYPS+
Sbjct: 157 K------------------------------------DVIAKIYLSGGPAGELRYPSY-T 179
Query: 304 LAKSSKIPGVGEFQCC-----DRNMLNLLQQHAEANG-NPLWGLRGPHDAPSYDESPNSN 357
+ + P G+FQ + L +L ++ N N WG + + P+
Sbjct: 180 TSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAIL--PPSDG 237
Query: 358 SFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGET-GVSIYGKIPLIHSWY 416
F NG + S YG +L WY L +H + LA + F T V I KI +H Y
Sbjct: 238 EQFLMNG--YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQY 295
Query: 417 K--TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPES 474
T H +E AG YN Y+ + + F + ++++D+ E +S P++
Sbjct: 296 NNPTIPHGAEKPAG-YND-----YSHLLDAFKSAKLDVTFTCLEMTDKGSYPE-YSMPKT 348
Query: 475 LLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVV--DLFTYQ 523
L+ I T N+ G+ ++G+N+ G ++++ + F N L YQ
Sbjct: 349 LVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYNFAGFTLLRYQ 399
>pdb|1VEO|A Chain A, Crystal Structure Analysis Of Y164fMALTOSE OF BACILLUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 95/411 (23%), Positives = 165/411 (40%), Gaps = 72/411 (17%)
Query: 129 GVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLP 183
+ + WWG EK ++++S A+ V+ G+K+ + H +P+P
Sbjct: 45 AITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIP 104
Query: 184 DWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPF 243
WV +S S+++ ++G K L+ D+ + Y E +F ++ KP+
Sbjct: 105 SWVWN-QKSDDSLYFKSETGTVNKETLNPLASDVIRKE-------YGELYTAFAAAMKPY 156
Query: 244 MGTTITVRSFDFKQCQVHTISDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHR 303
D + I + GP GELRYPS+
Sbjct: 157 K------------------------------------DVIAKIFLSGGPAGELRYPSY-T 179
Query: 304 LAKSSKIPGVGEFQCC-----DRNMLNLLQQHAEANG-NPLWGLRGPHDAPSYDESPNSN 357
+ + P G+FQ + L +L ++ N N WG + + P+
Sbjct: 180 TSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAIL--PPSDG 237
Query: 358 SFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGET-GVSIYGKIPLIHSWY 416
F NG + S YG +L WY L +H + LA + F T V I KI +H Y
Sbjct: 238 EQFLMNG--YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQY 295
Query: 417 K--TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPES 474
T H +E AG YN Y+ + + F + ++++D+ E +S P++
Sbjct: 296 NNPTIPHGAEKPAG-YND-----YSHLLDAFKSAKLDVTFTCLEMTDKGSYPE-YSMPKT 348
Query: 475 LLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVV--DLFTYQ 523
L+ I T N+ G+ ++G+N+ G ++++ + F N L YQ
Sbjct: 349 LVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYNFAGFTLLRYQ 399
>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N)
MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5
Length = 516
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 95/411 (23%), Positives = 167/411 (40%), Gaps = 72/411 (17%)
Query: 129 GVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLP 183
+ + WWG EK ++++S A+ V+ G+K+ + H +P+P
Sbjct: 45 AIMVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIP 104
Query: 184 DWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPF 243
WV +S S+++ ++G K L+ D+ + Y E +F ++ KP+
Sbjct: 105 SWVWN-QKSDDSLYFKSETGTVNKETLNPLASDVIRKE-------YGELYTAFAAAMKPY 156
Query: 244 MGTTITVRSFDFKQCQVHTISDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHR 303
DV++ ++ GP GELRYPS +
Sbjct: 157 ----------------------------KDVIAKIELSG--------GPAGELRYPS-YT 179
Query: 304 LAKSSKIPGVGEFQCC-----DRNMLNLLQQHAEANG-NPLWGLRGPHDAPSYDESPNSN 357
+ + P G+FQ + L +L ++ N N WG + + P+
Sbjct: 180 TSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAIL--PPSDG 237
Query: 358 SFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGET-GVSIYGKIPLIHSWY 416
F NG + S YG +L WY L +H + LA + F T V I KI +H Y
Sbjct: 238 EQFLMNG--YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQY 295
Query: 417 K--TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPES 474
T H +E AG YN Y+ + + F + ++++D+ E +S P++
Sbjct: 296 NNPTIPHGAEKPAG-YND-----YSHLLDAFKSAKLDVNFTCLEMTDKGSYPE-YSMPKT 348
Query: 475 LLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVV--DLFTYQ 523
L+ I T N+ G+ ++G+N+ G ++++ + F N L YQ
Sbjct: 349 LVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYNFAGFTLLRYQ 399
>pdb|1ITC|A Chain A, Beta-amylase From Bacillus Cereus Var. Mycoides Complexed
With Maltopentaose
Length = 516
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 94/411 (22%), Positives = 164/411 (39%), Gaps = 72/411 (17%)
Query: 129 GVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLP 183
+ + WWG EK ++++S A+ V+ G+K+ + H +P+P
Sbjct: 45 AITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIP 104
Query: 184 DWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPF 243
WV +S S+++ ++G K L+ D+ + Y E +F ++ KP+
Sbjct: 105 SWVWN-QKSDDSLYFKSETGTVNKETLNPLASDVIRKE-------YGELYTAFAAAMKPY 156
Query: 244 MGTTITVRSFDFKQCQVHTISDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHR 303
D + I + GP G LRYPS+
Sbjct: 157 K------------------------------------DVIAKIYLSGGPAGALRYPSY-T 179
Query: 304 LAKSSKIPGVGEFQCC-----DRNMLNLLQQHAEANG-NPLWGLRGPHDAPSYDESPNSN 357
+ + P G+FQ + L +L ++ N N WG + + P+
Sbjct: 180 TSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAIL--PPSDG 237
Query: 358 SFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGET-GVSIYGKIPLIHSWY 416
F NG + S YG +L WY L +H + LA + F T V I KI +H Y
Sbjct: 238 EQFLMNG--YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQY 295
Query: 417 K--TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPES 474
T H +E AG YN Y+ + + F + ++++D+ E +S P++
Sbjct: 296 NNPTIPHGAEKPAG-YND-----YSHLLDAFKSAKLDVTFTCLEMTDKGSYPE-YSMPKT 348
Query: 475 LLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVV--DLFTYQ 523
L+ I T N+ G+ ++G+N+ G ++++ + F N L YQ
Sbjct: 349 LVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYNFAGFTLLRYQ 399
>pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|B Chain B, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|C Chain C, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|D Chain D, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|E Chain E, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|F Chain F, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
Length = 456
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 442 AEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSG 492
A++F +N CKMI+ G ++ + +L + A N GV VSG
Sbjct: 340 ADLFIQNKCKMIVEGANMPTHIKALHKLKQNNIILCPSKAA-NAGGVAVSG 389
>pdb|3BH0|A Chain A, Atpase Domain Of G40p
Length = 315
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 489 EVSGQNSSVTGAPGGFEQMKKNLFG---ENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNL 545
E+ + ++TG P GF ++ + +G N V + MG F+ + + + N
Sbjct: 40 EIESADGNITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---ND 96
Query: 546 NQLELHGDDLPVEEEVTESVHTNANTNIQ-VQAA 578
+ + LH ++ +E + + T + N Q ++AA
Sbjct: 97 DVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAA 130
>pdb|4EPS|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacova_04982)
From Bacteroides Ovatus Atcc 8483 At 1.85 A Resolution
Length = 510
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 383 LISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPS 423
L SH NC+ L S + ETG IH W+ T S S
Sbjct: 325 LRSHPNCVHGLVXSLYTETGKFSPALTQSIHDWFXTTSFTS 365
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,195,193
Number of Sequences: 62578
Number of extensions: 721929
Number of successful extensions: 1795
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1675
Number of HSP's gapped (non-prelim): 52
length of query: 578
length of database: 14,973,337
effective HSP length: 104
effective length of query: 474
effective length of database: 8,465,225
effective search space: 4012516650
effective search space used: 4012516650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)