Query 008086
Match_columns 578
No_of_seqs 143 out of 212
Neff 3.2
Searched_HMMs 46136
Date Thu Mar 28 19:17:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00197 beta-amylase; Provisi 100.0 1E-185 3E-190 1461.2 46.0 459 82-576 96-567 (573)
2 PLN02803 beta-amylase 100.0 1E-183 2E-188 1442.8 47.5 443 82-561 76-525 (548)
3 PLN02161 beta-amylase 100.0 5E-180 1E-184 1409.6 44.4 431 83-548 83-530 (531)
4 PLN02801 beta-amylase 100.0 3E-179 7E-184 1403.2 45.1 426 84-548 8-448 (517)
5 PLN02905 beta-amylase 100.0 3E-177 8E-182 1408.8 45.8 428 81-548 254-695 (702)
6 PLN02705 beta-amylase 100.0 2E-176 5E-181 1399.2 45.2 432 78-549 233-676 (681)
7 PF01373 Glyco_hydro_14: Glyco 100.0 5E-158 1E-162 1221.1 26.7 387 95-541 1-402 (402)
8 PF02449 Glyco_hydro_42: Beta- 99.7 9.5E-18 2.1E-22 170.8 12.6 212 112-412 9-238 (374)
9 COG1874 LacA Beta-galactosidas 99.4 1.3E-11 2.9E-16 137.1 16.6 205 112-400 29-251 (673)
10 PF01301 Glyco_hydro_35: Glyco 98.5 2.9E-07 6.3E-12 94.3 8.3 76 111-189 22-103 (319)
11 PLN03059 beta-galactosidase; P 97.9 5.3E-05 1.2E-09 87.0 10.0 106 110-244 56-165 (840)
12 TIGR03356 BGL beta-galactosida 97.6 0.00025 5.4E-09 75.6 9.8 104 108-246 49-155 (427)
13 PF00150 Cellulase: Cellulase 97.4 0.00063 1.4E-08 64.8 8.0 63 114-185 22-88 (281)
14 smart00633 Glyco_10 Glycosyl h 97.1 0.032 6.9E-07 55.2 16.9 47 136-188 3-49 (254)
15 PF00232 Glyco_hydro_1: Glycos 97.1 0.0026 5.6E-08 68.1 9.6 107 108-249 53-163 (455)
16 KOG0496 Beta-galactosidase [Ca 96.7 0.0039 8.5E-08 70.3 7.2 75 111-188 47-127 (649)
17 PRK09852 cryptic 6-phospho-bet 96.5 0.019 4.2E-07 62.6 11.1 108 108-249 66-177 (474)
18 PRK15014 6-phospho-beta-glucos 96.1 0.031 6.8E-07 61.0 10.1 107 109-249 65-175 (477)
19 TIGR01233 lacG 6-phospho-beta- 96.1 0.055 1.2E-06 58.9 11.7 108 106-249 46-156 (467)
20 PRK13511 6-phospho-beta-galact 96.0 0.034 7.5E-07 60.3 9.7 106 108-249 49-157 (469)
21 PRK09589 celA 6-phospho-beta-g 95.7 0.051 1.1E-06 59.3 9.8 108 108-249 62-173 (476)
22 PLN02814 beta-glucosidase 95.6 0.055 1.2E-06 59.6 9.4 108 108-249 72-182 (504)
23 PLN02849 beta-glucosidase 95.4 0.069 1.5E-06 58.9 9.2 108 108-249 74-184 (503)
24 PLN02998 beta-glucosidase 95.1 0.092 2E-06 57.9 9.2 108 108-249 77-187 (497)
25 COG3693 XynA Beta-1,4-xylanase 95.1 0.26 5.7E-06 52.5 12.0 54 129-188 59-115 (345)
26 PRK09593 arb 6-phospho-beta-gl 94.6 0.21 4.5E-06 54.8 10.0 108 108-249 68-179 (478)
27 PF14871 GHL6: Hypothetical gl 94.5 0.64 1.4E-05 43.1 11.6 111 117-245 4-124 (132)
28 PF00331 Glyco_hydro_10: Glyco 94.3 0.46 1E-05 49.1 11.5 219 118-466 26-250 (320)
29 PF01229 Glyco_hydro_39: Glyco 93.5 0.22 4.8E-06 54.1 7.6 102 113-246 39-151 (486)
30 COG2723 BglB Beta-glucosidase/ 92.7 2 4.3E-05 47.8 13.4 118 98-249 41-165 (460)
31 PF02638 DUF187: Glycosyl hydr 92.4 1.7 3.7E-05 45.1 12.0 122 109-245 15-154 (311)
32 cd03465 URO-D_like The URO-D _ 89.7 2.3 4.9E-05 42.9 9.6 119 115-242 170-299 (330)
33 PF07745 Glyco_hydro_53: Glyco 89.1 0.72 1.6E-05 48.9 5.8 55 117-176 28-82 (332)
34 PF14488 DUF4434: Domain of un 85.5 2.6 5.6E-05 40.3 6.8 60 111-172 18-87 (166)
35 TIGR01093 aroD 3-dehydroquinat 84.1 5.4 0.00012 39.3 8.5 45 118-175 83-128 (228)
36 PRK11572 copper homeostasis pr 83.6 4 8.7E-05 42.1 7.5 68 91-173 51-121 (248)
37 TIGR01463 mtaA_cmuA methyltran 82.7 3.3 7.1E-05 42.5 6.6 80 115-202 182-264 (340)
38 PF10566 Glyco_hydro_97: Glyco 82.2 3.3 7.1E-05 43.1 6.4 108 90-219 85-194 (273)
39 cd00502 DHQase_I Type I 3-dehy 81.1 22 0.00048 34.8 11.4 55 116-186 79-133 (225)
40 PRK01060 endonuclease IV; Prov 81.0 3.8 8.3E-05 40.3 6.2 63 97-166 1-63 (281)
41 PF01261 AP_endonuc_2: Xylose 80.2 2.2 4.8E-05 38.7 3.9 47 119-170 1-47 (213)
42 cd00465 URO-D_CIMS_like The UR 79.4 3.4 7.3E-05 41.2 5.2 118 113-241 144-275 (306)
43 PF03932 CutC: CutC family; I 78.9 3.7 7.9E-05 40.9 5.3 71 89-174 48-121 (201)
44 PF00128 Alpha-amylase: Alpha 78.7 5.4 0.00012 38.2 6.2 61 113-176 4-79 (316)
45 PF03659 Glyco_hydro_71: Glyco 77.7 6 0.00013 42.7 6.9 55 111-174 15-69 (386)
46 PRK09856 fructoselysine 3-epim 77.2 7.6 0.00016 38.1 6.9 53 114-173 14-70 (275)
47 PRK13209 L-xylulose 5-phosphat 75.5 6.1 0.00013 39.0 5.8 67 98-169 8-76 (283)
48 smart00642 Aamy Alpha-amylase 75.2 12 0.00027 35.5 7.5 66 109-174 15-94 (166)
49 PHA00442 host recBCD nuclease 74.6 3.1 6.8E-05 34.6 2.9 26 117-161 30-55 (59)
50 cd03308 CmuA_CmuC_like CmuA_Cm 72.3 6.2 0.00013 41.9 5.2 84 92-179 173-280 (378)
51 TIGR02402 trehalose_TreZ malto 71.4 7.7 0.00017 43.4 5.9 65 104-176 105-186 (542)
52 KOG0626 Beta-glucosidase, lact 71.4 20 0.00043 40.8 9.0 69 113-188 91-164 (524)
53 PRK02412 aroD 3-dehydroquinate 70.9 29 0.00064 35.1 9.4 107 91-230 74-183 (253)
54 TIGR00542 hxl6Piso_put hexulos 70.3 9.5 0.00021 37.8 5.7 55 112-169 15-71 (279)
55 PF01487 DHquinase_I: Type I 3 69.9 35 0.00075 33.3 9.4 115 91-243 54-172 (224)
56 TIGR00433 bioB biotin syntheta 69.8 13 0.00027 37.2 6.5 55 116-172 123-180 (296)
57 TIGR01515 branching_enzym alph 69.5 9.1 0.0002 43.3 6.0 54 113-172 156-228 (613)
58 PF00290 Trp_syntA: Tryptophan 68.4 49 0.0011 34.3 10.5 111 89-240 85-197 (259)
59 PF08821 CGGC: CGGC domain; I 67.6 19 0.00041 32.8 6.5 56 112-173 51-107 (107)
60 PRK10785 maltodextrin glucosid 66.7 48 0.001 37.6 10.9 110 112-234 178-312 (598)
61 cd06593 GH31_xylosidase_YicI Y 66.3 68 0.0015 32.8 11.0 88 109-205 20-114 (308)
62 cd06592 GH31_glucosidase_KIAA1 64.6 83 0.0018 32.5 11.3 83 110-203 27-116 (303)
63 PRK13210 putative L-xylulose 5 64.3 18 0.00038 35.5 6.2 52 114-169 17-71 (284)
64 PLN02361 alpha-amylase 63.5 22 0.00047 38.8 7.3 63 111-176 27-103 (401)
65 PRK12313 glycogen branching en 63.5 13 0.00027 42.2 5.7 76 91-172 147-242 (633)
66 TIGR02104 pulA_typeI pullulana 61.7 12 0.00025 42.3 5.0 63 114-176 165-256 (605)
67 TIGR01464 hemE uroporphyrinoge 61.5 13 0.00028 38.4 4.9 75 117-202 184-263 (338)
68 TIGR02631 xylA_Arthro xylose i 60.9 11 0.00023 40.7 4.3 52 114-170 33-88 (382)
69 cd00717 URO-D Uroporphyrinogen 59.6 13 0.00029 38.2 4.6 75 117-202 181-260 (335)
70 TIGR03234 OH-pyruv-isom hydrox 59.6 21 0.00046 34.8 5.8 42 114-167 15-56 (254)
71 cd03307 Mta_CmuA_like MtaA_Cmu 58.3 19 0.00041 37.0 5.4 75 117-201 175-252 (326)
72 PF02065 Melibiase: Melibiase; 57.7 31 0.00067 37.6 7.2 74 111-188 56-145 (394)
73 PRK04302 triosephosphate isome 57.1 25 0.00054 34.5 5.8 48 117-174 76-123 (223)
74 COG3867 Arabinogalactan endo-1 56.5 25 0.00054 38.2 6.0 59 116-176 66-128 (403)
75 PLN02389 biotin synthase 56.0 24 0.00051 38.1 5.9 50 116-166 178-229 (379)
76 PLN02591 tryptophan synthase 55.6 59 0.0013 33.4 8.4 89 90-204 77-166 (250)
77 PRK09989 hypothetical protein; 54.9 27 0.00059 34.3 5.7 43 113-167 15-57 (258)
78 PRK09997 hydroxypyruvate isome 54.5 18 0.00039 35.6 4.4 41 114-166 16-56 (258)
79 PRK10933 trehalose-6-phosphate 54.4 33 0.00072 38.6 6.9 64 109-174 29-105 (551)
80 smart00518 AP2Ec AP endonuclea 53.1 91 0.002 30.7 9.0 51 114-166 11-61 (273)
81 PRK13111 trpA tryptophan synth 53.1 32 0.0007 35.3 6.1 90 90-205 88-178 (258)
82 TIGR02102 pullulan_Gpos pullul 52.5 26 0.00056 43.1 6.0 61 112-172 479-577 (1111)
83 PF01136 Peptidase_U32: Peptid 51.4 29 0.00063 33.6 5.2 42 113-172 2-45 (233)
84 cd07944 DRE_TIM_HOA_like 4-hyd 50.7 1E+02 0.0022 31.5 9.1 131 117-295 86-221 (266)
85 cd07941 DRE_TIM_LeuA3 Desulfob 50.1 97 0.0021 31.6 8.9 118 117-268 82-208 (273)
86 PF01791 DeoC: DeoC/LacD famil 49.3 13 0.00028 36.5 2.5 76 91-169 56-131 (236)
87 PRK06252 methylcobalamin:coenz 48.9 17 0.00038 37.2 3.5 57 116-178 183-242 (339)
88 COG1649 Uncharacterized protei 48.6 1.8E+02 0.004 32.5 11.2 125 106-245 57-199 (418)
89 TIGR02403 trehalose_treC alpha 48.3 61 0.0013 36.3 7.7 66 109-176 23-101 (543)
90 PF05706 CDKN3: Cyclin-depende 48.2 10 0.00022 37.4 1.5 47 112-166 57-103 (168)
91 TIGR03699 mena_SCO4550 menaqui 48.1 21 0.00046 36.9 4.0 55 116-170 143-201 (340)
92 COG2730 BglC Endoglucanase [Ca 48.1 1.3E+02 0.0028 32.5 9.9 95 116-242 76-178 (407)
93 PRK00115 hemE uroporphyrinogen 47.7 25 0.00054 36.6 4.4 77 115-202 188-269 (346)
94 PLN02808 alpha-galactosidase 47.7 35 0.00075 37.4 5.6 58 111-168 47-115 (386)
95 PF09184 PPP4R2: PPP4R2; Inte 47.4 5.7 0.00012 41.5 -0.3 48 501-549 76-128 (288)
96 cd03309 CmuC_like CmuC_like. P 47.3 24 0.00051 37.2 4.2 115 119-242 161-291 (321)
97 TIGR03849 arch_ComA phosphosul 46.2 45 0.00097 34.5 5.8 86 91-189 54-140 (237)
98 PLN02877 alpha-amylase/limit d 46.2 35 0.00076 41.4 5.8 53 116-168 376-484 (970)
99 PRK12331 oxaloacetate decarbox 46.1 1E+02 0.0023 34.2 9.0 98 113-240 96-196 (448)
100 PRK15452 putative protease; Pr 46.0 44 0.00095 37.0 6.1 39 90-133 58-96 (443)
101 PRK10658 putative alpha-glucos 44.9 1.6E+02 0.0035 34.3 10.6 86 112-206 282-374 (665)
102 PRK13753 dihydropteroate synth 44.3 2E+02 0.0044 30.3 10.3 163 101-337 13-204 (279)
103 TIGR03551 F420_cofH 7,8-dideme 43.8 25 0.00054 36.7 3.7 57 116-172 141-201 (343)
104 PF13653 GDPD_2: Glycerophosph 43.6 24 0.00052 25.8 2.5 17 117-133 11-27 (30)
105 PRK07360 FO synthase subunit 2 43.6 27 0.00058 37.2 3.9 52 116-172 163-223 (371)
106 TIGR00674 dapA dihydrodipicoli 42.7 48 0.001 33.6 5.4 96 89-204 65-163 (285)
107 PRK12595 bifunctional 3-deoxy- 42.6 1.1E+02 0.0023 33.1 8.2 76 89-173 115-190 (360)
108 PF01208 URO-D: Uroporphyrinog 42.5 99 0.0022 31.6 7.7 114 116-237 185-307 (343)
109 cd03174 DRE_TIM_metallolyase D 42.0 3E+02 0.0065 26.9 10.6 102 116-242 77-190 (265)
110 TIGR00262 trpA tryptophan synt 40.3 84 0.0018 32.1 6.7 47 113-171 102-148 (256)
111 cd04724 Tryptophan_synthase_al 40.2 1.5E+02 0.0032 29.8 8.3 63 91-172 76-138 (242)
112 TIGR00695 uxuA mannonate dehyd 40.2 28 0.0006 38.3 3.5 51 118-172 15-65 (394)
113 COG3142 CutC Uncharacterized p 40.1 56 0.0012 34.1 5.4 75 90-175 50-127 (241)
114 TIGR00423 radical SAM domain p 40.0 38 0.00082 34.8 4.3 56 116-171 107-166 (309)
115 PF02836 Glyco_hydro_2_C: Glyc 39.3 50 0.0011 33.4 4.9 49 110-172 33-81 (298)
116 PLN02692 alpha-galactosidase 39.3 54 0.0012 36.3 5.5 56 111-166 71-137 (412)
117 PRK07094 biotin synthase; Prov 39.2 54 0.0012 33.5 5.2 55 116-171 129-186 (323)
118 cd01299 Met_dep_hydrolase_A Me 39.0 94 0.002 31.4 6.8 64 109-176 116-182 (342)
119 cd06604 GH31_glucosidase_II_Ma 38.9 3.4E+02 0.0074 28.4 11.0 89 108-205 19-114 (339)
120 PRK03906 mannonate dehydratase 38.9 44 0.00096 36.4 4.7 51 118-172 15-65 (385)
121 PRK09441 cytoplasmic alpha-amy 38.9 67 0.0014 35.2 6.1 65 112-176 21-107 (479)
122 TIGR02456 treS_nterm trehalose 38.7 1.4E+02 0.0029 33.5 8.5 65 109-176 24-102 (539)
123 PF11340 DUF3142: Protein of u 38.5 1.8E+02 0.0039 29.3 8.4 95 113-243 27-130 (181)
124 cd01396 MeCP2_MBD MeCP2, MBD1, 38.3 16 0.00035 31.4 1.1 51 182-260 8-68 (77)
125 cd03311 CIMS_C_terminal_like C 37.9 72 0.0016 32.8 5.9 65 112-178 154-219 (332)
126 PLN02229 alpha-galactosidase 37.4 55 0.0012 36.5 5.2 63 104-167 68-145 (427)
127 PLN00196 alpha-amylase; Provis 36.8 84 0.0018 34.6 6.5 60 112-174 43-116 (428)
128 PF01902 ATP_bind_4: ATP-bindi 36.7 51 0.0011 33.2 4.5 59 438-496 123-181 (218)
129 PRK08508 biotin synthase; Prov 36.6 50 0.0011 33.7 4.5 47 116-168 102-155 (279)
130 PRK13398 3-deoxy-7-phosphohept 36.4 1.4E+02 0.0031 30.8 7.8 67 102-173 30-99 (266)
131 PRK03170 dihydrodipicolinate s 36.4 1.4E+02 0.003 30.4 7.5 94 89-204 68-166 (292)
132 KOG4175 Tryptophan synthase al 36.1 46 0.00099 34.5 4.1 82 427-529 101-185 (268)
133 smart00812 Alpha_L_fucos Alpha 36.1 68 0.0015 34.8 5.6 53 439-491 84-145 (384)
134 PRK08445 hypothetical protein; 35.7 51 0.0011 35.0 4.5 57 116-172 144-204 (348)
135 CHL00200 trpA tryptophan synth 35.7 60 0.0013 33.5 4.9 90 90-205 90-180 (263)
136 PF02679 ComA: (2R)-phospho-3- 35.2 58 0.0013 33.7 4.7 86 90-188 66-152 (244)
137 TIGR03700 mena_SCO4494 putativ 35.2 46 0.001 35.0 4.1 57 116-172 150-210 (351)
138 COG0826 Collagenase and relate 35.1 93 0.002 33.5 6.4 53 91-169 62-119 (347)
139 TIGR02103 pullul_strch alpha-1 35.1 56 0.0012 39.5 5.2 24 116-139 289-314 (898)
140 cd06565 GH20_GcnA-like Glycosy 34.5 5.4E+02 0.012 26.8 11.6 134 108-243 12-177 (301)
141 COG1082 IolE Sugar phosphate i 33.6 89 0.0019 30.3 5.5 51 112-169 14-64 (274)
142 PRK07329 hypothetical protein; 33.3 1.2E+02 0.0026 30.4 6.4 42 437-489 196-241 (246)
143 COG1809 (2R)-phospho-3-sulfola 32.5 83 0.0018 33.0 5.3 45 114-166 91-135 (258)
144 TIGR02512 Fe_only_hydrog hydro 32.4 2.2E+02 0.0047 30.5 8.5 85 114-236 111-197 (374)
145 COG3603 Uncharacterized conser 31.8 77 0.0017 30.3 4.5 44 82-128 82-125 (128)
146 cd06602 GH31_MGAM_SI_GAA This 31.6 4.7E+02 0.01 27.7 10.8 92 108-206 19-120 (339)
147 TIGR03679 arCOG00187 arCOG0018 31.3 89 0.0019 31.0 5.2 59 438-496 124-182 (218)
148 cd08627 PI-PLCc_gamma1 Catalyt 31.3 38 0.00082 34.9 2.6 31 106-137 23-53 (229)
149 PF01261 AP_endonuc_2: Xylose 31.1 81 0.0018 28.6 4.5 61 112-174 70-134 (213)
150 PRK09505 malS alpha-amylase; R 30.9 1.1E+02 0.0023 36.0 6.4 61 112-172 229-314 (683)
151 PLN02746 hydroxymethylglutaryl 30.8 2.1E+02 0.0046 31.0 8.2 106 117-241 125-240 (347)
152 PRK15108 biotin synthase; Prov 30.7 84 0.0018 33.3 5.2 50 116-166 136-187 (345)
153 PRK13111 trpA tryptophan synth 30.7 73 0.0016 32.8 4.6 51 427-491 95-146 (258)
154 COG2019 AdkA Archaeal adenylat 30.6 77 0.0017 32.0 4.5 112 130-250 39-167 (189)
155 PF10566 Glyco_hydro_97: Glyco 30.5 1.5E+02 0.0033 31.1 6.9 61 113-175 32-96 (273)
156 PRK02227 hypothetical protein; 30.4 68 0.0015 33.3 4.3 46 117-166 135-183 (238)
157 PRK14706 glycogen branching en 30.1 94 0.002 36.0 5.8 58 110-172 164-239 (639)
158 PRK05402 glycogen branching en 30.0 1E+02 0.0022 35.9 6.1 57 111-172 263-337 (726)
159 PF05378 Hydant_A_N: Hydantoin 29.8 62 0.0013 31.2 3.7 45 111-163 132-176 (176)
160 COG1619 LdcA Uncharacterized p 29.7 1.5E+02 0.0033 31.8 6.8 93 102-198 15-107 (313)
161 PRK12677 xylose isomerase; Pro 29.7 92 0.002 33.7 5.3 49 114-167 32-84 (384)
162 PRK08195 4-hyroxy-2-oxovalerat 29.6 1.4E+02 0.0031 31.7 6.6 91 117-241 92-187 (337)
163 cd06600 GH31_MGAM-like This fa 29.6 6.5E+02 0.014 26.3 11.3 88 109-205 20-114 (317)
164 PRK06256 biotin synthase; Vali 29.4 86 0.0019 32.3 4.9 50 117-167 153-204 (336)
165 TIGR00676 fadh2 5,10-methylene 29.3 63 0.0014 33.0 3.8 63 119-192 150-222 (272)
166 PLN02417 dihydrodipicolinate s 29.2 2.5E+02 0.0054 28.7 8.1 93 90-204 69-164 (280)
167 PRK13125 trpA tryptophan synth 29.2 1.5E+02 0.0032 29.8 6.3 46 116-172 91-136 (244)
168 PLN02960 alpha-amylase 29.1 1.1E+02 0.0024 37.2 6.2 54 112-172 415-486 (897)
169 TIGR00010 hydrolase, TatD fami 29.0 1.5E+02 0.0033 28.2 6.1 46 115-173 17-62 (252)
170 PF04476 DUF556: Protein of un 28.8 78 0.0017 32.9 4.4 44 119-166 137-183 (235)
171 cd00019 AP2Ec AP endonuclease 28.6 1.6E+02 0.0035 29.2 6.5 52 113-166 10-62 (279)
172 PRK09936 hypothetical protein; 28.5 1.1E+02 0.0023 32.9 5.4 61 111-189 36-102 (296)
173 TIGR00683 nanA N-acetylneurami 28.5 2.7E+02 0.0058 28.7 8.2 97 89-204 68-167 (290)
174 PLN02591 tryptophan synthase 28.4 66 0.0014 33.0 3.8 99 427-547 84-186 (250)
175 COG1312 UxuA D-mannonate dehyd 28.2 1.1E+02 0.0025 33.5 5.6 51 118-172 15-65 (362)
176 cd06598 GH31_transferase_CtsZ 27.8 5.8E+02 0.013 26.6 10.5 63 109-171 20-91 (317)
177 TIGR00539 hemN_rel putative ox 27.8 1E+02 0.0022 32.5 5.1 52 117-168 101-155 (360)
178 cd06564 GH20_DspB_LnbB-like Gl 27.7 7E+02 0.015 26.1 11.2 134 107-249 11-197 (326)
179 PF01055 Glyco_hydro_31: Glyco 27.4 3.1E+02 0.0068 29.3 8.7 86 110-207 40-136 (441)
180 PLN02433 uroporphyrinogen deca 27.1 87 0.0019 32.8 4.5 77 117-202 183-262 (345)
181 cd08592 PI-PLCc_gamma Catalyti 27.0 50 0.0011 34.0 2.6 31 106-137 23-53 (229)
182 cd00958 DhnA Class I fructose- 26.6 99 0.0022 30.2 4.5 52 113-168 76-127 (235)
183 cd08560 GDPD_EcGlpQ_like_1 Gly 26.3 84 0.0018 33.9 4.3 50 115-168 247-296 (356)
184 PF05913 DUF871: Bacterial pro 26.2 1.1E+02 0.0024 33.1 5.2 48 440-492 18-65 (357)
185 COG2342 Predicted extracellula 26.2 1.3E+02 0.0027 32.5 5.4 58 112-169 125-190 (300)
186 cd06597 GH31_transferase_CtsY 25.6 7E+02 0.015 26.5 10.8 97 109-205 20-140 (340)
187 PRK09875 putative hydrolase; P 25.6 2E+02 0.0044 30.2 6.8 65 108-188 29-95 (292)
188 COG3618 Predicted metal-depend 25.2 5.2E+02 0.011 27.6 9.6 108 428-553 29-141 (279)
189 TIGR03056 bchO_mg_che_rel puta 25.0 2.9E+02 0.0064 25.9 7.2 77 407-488 11-94 (278)
190 CHL00200 trpA tryptophan synth 24.9 92 0.002 32.2 4.1 99 427-547 97-199 (263)
191 TIGR00419 tim triosephosphate 24.8 1.6E+02 0.0034 29.7 5.6 46 117-172 72-117 (205)
192 cd08610 GDPD_GDE6 Glycerophosp 24.6 43 0.00093 35.4 1.7 59 109-173 253-315 (316)
193 cd00598 GH18_chitinase-like Th 24.5 3.1E+02 0.0068 25.6 7.3 69 90-162 63-136 (210)
194 PRK05926 hypothetical protein; 24.2 1E+02 0.0022 33.3 4.4 58 115-172 168-229 (370)
195 cd07938 DRE_TIM_HMGL 3-hydroxy 24.2 5.6E+02 0.012 26.4 9.6 108 117-241 77-192 (274)
196 cd07937 DRE_TIM_PC_TC_5S Pyruv 24.2 5.3E+02 0.012 26.4 9.4 63 113-188 91-153 (275)
197 smart00481 POLIIIAc DNA polyme 24.0 2.1E+02 0.0046 22.6 5.2 43 115-168 17-59 (67)
198 cd00950 DHDPS Dihydrodipicolin 24.0 2E+02 0.0043 29.0 6.2 102 110-222 79-185 (284)
199 TIGR00289 conserved hypothetic 23.8 1.4E+02 0.0029 30.4 5.0 56 440-496 125-180 (222)
200 PF03786 UxuA: D-mannonate deh 23.6 78 0.0017 34.5 3.5 51 118-172 16-67 (351)
201 PF04187 DUF399: Protein of un 23.4 56 0.0012 32.4 2.2 31 147-188 86-116 (213)
202 cd06603 GH31_GANC_GANAB_alpha 23.4 7.9E+02 0.017 25.8 10.6 89 109-206 20-115 (339)
203 PRK05692 hydroxymethylglutaryl 23.4 3.5E+02 0.0077 28.1 8.0 106 117-241 83-198 (287)
204 COG1099 Predicted metal-depend 23.3 54 0.0012 34.3 2.1 58 117-175 15-75 (254)
205 COG0159 TrpA Tryptophan syntha 23.3 3.8E+02 0.0083 28.3 8.2 75 112-205 108-183 (265)
206 COG4130 Predicted sugar epimer 23.2 40 0.00086 35.2 1.2 104 55-163 59-164 (272)
207 smart00854 PGA_cap Bacterial c 23.2 1.9E+02 0.004 28.6 5.7 57 112-175 159-215 (239)
208 TIGR00677 fadh2_euk methylenet 23.0 1.1E+02 0.0023 31.8 4.2 65 116-191 148-225 (281)
209 TIGR03217 4OH_2_O_val_ald 4-hy 23.0 2.2E+02 0.0048 30.3 6.6 91 117-241 91-186 (333)
210 TIGR01108 oadA oxaloacetate de 22.9 3.1E+02 0.0066 31.7 8.1 51 112-172 90-140 (582)
211 PRK13210 putative L-xylulose 5 22.6 1.9E+02 0.0041 28.4 5.6 60 113-174 94-155 (284)
212 TIGR02401 trehalose_TreY malto 22.5 3.1E+02 0.0067 33.2 8.2 64 106-173 12-88 (825)
213 TIGR00559 pdxJ pyridoxine 5'-p 22.4 1.2E+02 0.0026 31.6 4.3 50 117-166 135-185 (237)
214 cd06599 GH31_glycosidase_Aec37 22.1 3.8E+02 0.0082 27.9 8.0 87 112-205 28-121 (317)
215 COG1060 ThiH Thiamine biosynth 22.0 1.4E+02 0.0031 32.4 5.1 58 115-172 160-221 (370)
216 PTZ00445 p36-lilke protein; Pr 22.0 2.3E+02 0.005 29.3 6.2 61 107-167 23-95 (219)
217 PF03740 PdxJ: Pyridoxal phosp 21.9 68 0.0015 33.3 2.5 104 39-168 84-190 (239)
218 PRK11858 aksA trans-homoaconit 21.9 4E+02 0.0086 28.7 8.3 114 113-268 75-201 (378)
219 cd06413 GH25_muramidase_1 Unch 21.7 5E+02 0.011 24.9 8.2 136 118-274 16-154 (191)
220 TIGR00290 MJ0570_dom MJ0570-re 21.6 1.6E+02 0.0035 30.0 5.0 59 438-496 123-181 (223)
221 TIGR02351 thiH thiazole biosyn 21.5 2.5E+02 0.0055 29.9 6.7 60 116-188 162-232 (366)
222 PRK12858 tagatose 1,6-diphosph 21.4 1.2E+02 0.0025 32.8 4.2 55 114-168 107-161 (340)
223 PRK09240 thiH thiamine biosynt 21.3 1.8E+02 0.0039 31.1 5.5 46 116-166 163-219 (371)
224 cd08597 PI-PLCc_PRIP_metazoa C 21.3 71 0.0015 33.4 2.5 56 106-165 23-85 (260)
225 PLN02784 alpha-amylase 21.3 2.1E+02 0.0046 34.9 6.5 62 112-176 520-595 (894)
226 PLN02447 1,4-alpha-glucan-bran 21.2 4.3E+02 0.0093 31.8 8.9 81 90-176 228-327 (758)
227 TIGR00542 hxl6Piso_put hexulos 21.1 2E+02 0.0043 28.6 5.5 59 113-173 94-154 (279)
228 TIGR02026 BchE magnesium-proto 21.0 2.3E+02 0.005 31.4 6.5 47 117-168 288-341 (497)
229 PRK05588 histidinol-phosphatas 20.9 3.3E+02 0.0072 27.1 7.0 42 438-490 198-243 (255)
230 TIGR02884 spore_pdaA delta-lac 20.6 2.5E+02 0.0053 27.8 6.0 81 439-527 142-222 (224)
231 PRK08508 biotin synthase; Prov 20.4 3E+02 0.0065 28.2 6.8 55 111-171 41-96 (279)
232 PRK00957 methionine synthase; 20.4 4.2E+02 0.0091 27.2 7.8 80 112-204 143-223 (305)
233 cd02876 GH18_SI-CLP Stabilin-1 20.3 2.7E+02 0.0059 28.6 6.5 78 90-172 65-154 (318)
234 PRK14511 maltooligosyl trehalo 20.3 3.9E+02 0.0084 32.7 8.4 63 113-176 20-95 (879)
235 PRK09856 fructoselysine 3-epim 20.1 1.8E+02 0.0038 28.7 4.9 54 113-166 90-145 (275)
236 PRK07534 methionine synthase I 20.0 2.3E+02 0.005 30.3 6.0 51 111-172 129-179 (336)
No 1
>PLN00197 beta-amylase; Provisional
Probab=100.00 E-value=1.3e-185 Score=1461.16 Aligned_cols=459 Identities=40% Similarity=0.706 Sum_probs=436.8
Q ss_pred CCCCCCCCCCceEEEeeecceeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHH
Q 008086 82 SSARPKSLDAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEK 161 (578)
Q Consensus 82 ~~~~~~~~~~vpvyVmLPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~ 161 (578)
...+++..++||||||||||+|+++|+||++++++++|++||++||||||||||||+||+++|++|||++|++|++|||+
T Consensus 96 ~~~~~~~~~~vpvyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~ 175 (573)
T PLN00197 96 IGGTKEKGKGVPVYVMMPLDSVTMGNTVNRRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKR 175 (573)
T ss_pred cccccccCCCeeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHH
Confidence 33566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEeeecCCC-----CCCCCChhhHhhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHH
Q 008086 162 IGLKLHVSLCFHALKQ-----PKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESF 236 (578)
Q Consensus 162 ~GLKl~vvmsFH~cg~-----~~IpLP~WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF 236 (578)
+||||||||||||||+ |+||||+||++++++|||||||||+|+||+||||||||++|||+||||||+|+|||+||
T Consensus 176 ~GLKlq~VmSFHqCGGNVGD~~~IpLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SF 255 (573)
T PLN00197 176 HGLKVQAVMSFHQCGGNVGDSCTIPLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAF 255 (573)
T ss_pred cCCeEEEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHH
Confidence 9999999999999985 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhchhcCCceEeecccccccccccccccccccccccccccccccccceeecccCCCccCCCCcccCCCCCcCCCCccc
Q 008086 237 KSSFKPFMGTTITVRSFDFKQCQVHTISDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEF 316 (578)
Q Consensus 237 ~~~f~~~~g~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eI~VGLGP~GELRYPSy~~~~~~w~~PGiGEF 316 (578)
|++|++|++++|+ ||+|||||||||||||||+..++|+|||||||
T Consensus 256 r~~F~~~l~~~I~-----------------------------------eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEF 300 (573)
T PLN00197 256 RDNFKHLLGDTIV-----------------------------------EIQVGMGPAGELRYPSYPEQNGTWKFPGIGAF 300 (573)
T ss_pred HHHHHHHhcCcee-----------------------------------EEEeccCcCccccCCCCcCcCCCcCCCCccce
Confidence 9999999999999 99999999999999999998888999999999
Q ss_pred ccccHHHHHHHHHHHHHcCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 008086 317 QCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASS 396 (578)
Q Consensus 317 QCYDk~~~~~l~~~a~a~gn~~WG~~gP~da~~Yn~~P~~t~FF~~~gg~~~s~YG~FFL~WYs~~Li~Hgd~iL~~A~~ 396 (578)
|||||||+++||++|++.|||+||++||||||+||+.|++|+||+++||+|+|+||||||+|||++|++||||||++|+.
T Consensus 301 QCYDkyml~~L~~aA~~~G~p~WG~~gP~dAg~Yn~~P~~t~FF~~~gG~w~S~YG~FFL~WYS~~Ll~HGDrVL~~A~~ 380 (573)
T PLN00197 301 QCYDKYMLSSLKAAAEAAGKPEWGSTGPTDAGHYNNWPEDTRFFKKEGGGWNSPYGEFFLSWYSQMLLDHGERILSSAKS 380 (573)
T ss_pred eechHHHHHHHHHHHHHhCCHhhcCCCCCCccccCCCCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999977899999999999999999999999999999999
Q ss_pred ccCCCCcEEEEEeceeeecCCCCCChhhhccccccCCCCCChHHHHHHHHhCCceEEeeccccCCCCCCCCCCCChHHHH
Q 008086 397 TFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLL 476 (578)
Q Consensus 397 ~F~~~~v~l~~KV~GIHWwY~t~SHaAELTAGyYNt~~rdGY~~Ia~mfak~~~~l~ftc~Em~d~eqp~~~~s~Pe~Lv 476 (578)
+|++++|+|++|||||||||+|+|||||||||||||++||||.|||+|||||+|+|+||||||+|.+||++++|+||+||
T Consensus 381 ~F~g~~v~l~aKVaGIHWwY~t~SHAAELTAGyYNt~~rDGY~~Ia~mfarh~~~l~FTClEM~D~eqp~~a~s~PE~Lv 460 (573)
T PLN00197 381 IFENTGVKISVKIAGIHWHYGTRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLV 460 (573)
T ss_pred HhCCCCceEEEEeccceeecCCCCchHhhccccccCCCcccHHHHHHHHHHcCCeEEEEecCcccCCCCccccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeeeccccCCCCCcchHHHHHHhccCC-------CceeeEEEeecCcccCCCCChhhHHHHHHHhcCCC
Q 008086 477 AQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGE-------NVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLE 549 (578)
Q Consensus 477 ~QV~~aa~~~Gv~v~GENAl~~~d~~~~~qi~~~~~~~-------~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~ 549 (578)
+||+++|+++||+|+|||||++||+++|+||+++.+.. ..+.+||||||++.||+++||++|++|||+|+++.
T Consensus 461 ~QV~~aA~~~Gv~vaGENAL~r~D~~~~~qI~~~~~~~~~~~~~~~~l~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~ 540 (573)
T PLN00197 461 RQVALATREAEVPLAGENALPRYDDYAHEQILQASSLNIDGNSEDREMCAFTYLRMNPHLFQPDNWRRFVAFVKKMKEGK 540 (573)
T ss_pred HHHHHHHHHcCCcEeeeccccccChhHHHHHHHhcccccCCCcccCceeeEEEeCCChHHcChhhHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999997531 24889999999999999999999999999999966
Q ss_pred CCCCCCCccccc-cccccccCCcceeee
Q 008086 550 LHGDDLPVEEEV-TESVHTNANTNIQVQ 576 (578)
Q Consensus 550 ~~~dd~p~~~~~-~~~~~~~~~~~~~~q 576 (578)
. .+++|++.++ ++.........+|.+
T Consensus 541 ~-~~~~~~~~~~~~~~~~~~~~~~~~e~ 567 (573)
T PLN00197 541 D-SHRCREQVEREAEHFVHVTRPLVQEA 567 (573)
T ss_pred C-CCccchhcchhcccceecchhhHHHH
Confidence 5 7789988666 444444444444433
No 2
>PLN02803 beta-amylase
Probab=100.00 E-value=1.1e-183 Score=1442.76 Aligned_cols=443 Identities=40% Similarity=0.739 Sum_probs=428.1
Q ss_pred CCCCCCCCCCceEEEeeecceeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHH
Q 008086 82 SSARPKSLDAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEK 161 (578)
Q Consensus 82 ~~~~~~~~~~vpvyVmLPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~ 161 (578)
..++++..++||||||||||+|+++|+++++++|+++|++||++||||||||||||+||+++|++|||++|++|++|||+
T Consensus 76 ~~~~~~~~~~vpvyVMlPLd~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~ 155 (548)
T PLN02803 76 SGPHSKNDSGVPVFVMLPLDTVTMGGNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQK 155 (548)
T ss_pred cCcccccCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEeeecCCC-----CCCCCChhhHhhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHH
Q 008086 162 IGLKLHVSLCFHALKQ-----PKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESF 236 (578)
Q Consensus 162 ~GLKl~vvmsFH~cg~-----~~IpLP~WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF 236 (578)
+||||||||||||||+ |+||||+||++++++|||||||||+|+||+||||||||++||++||||||+|+|||+||
T Consensus 156 ~GLKlq~vmSFHqCGGNVGD~~~IpLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SF 235 (548)
T PLN02803 156 HGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSF 235 (548)
T ss_pred cCCeEEEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHH
Confidence 9999999999999985 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhchhcCCceEeecccccccccccccccccccccccccccccccccceeecccCCCccCCCCcccCCCCCcCCCCccc
Q 008086 237 KSSFKPFMGTTITVRSFDFKQCQVHTISDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEF 316 (578)
Q Consensus 237 ~~~f~~~~g~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eI~VGLGP~GELRYPSy~~~~~~w~~PGiGEF 316 (578)
|++|++|++++|+ ||+|||||||||||||||+..++|+|||||||
T Consensus 236 r~~F~~~l~~~I~-----------------------------------eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEF 280 (548)
T PLN02803 236 RERFKDYLGGVIA-----------------------------------EIQVGMGPCGELRYPSYPESNGTWRFPGIGEF 280 (548)
T ss_pred HHHHHHHhcCceE-----------------------------------EEEeccccCccccCCCCcCcCCCccCCCccce
Confidence 9999999999999 99999999999999999998878999999999
Q ss_pred ccccHHHHHHHHHHHHHcCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 008086 317 QCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASS 396 (578)
Q Consensus 317 QCYDk~~~~~l~~~a~a~gn~~WG~~gP~da~~Yn~~P~~t~FF~~~gg~~~s~YG~FFL~WYs~~Li~Hgd~iL~~A~~ 396 (578)
|||||||+++||++|+++|||+||++||||||+||++|++|+||++ +|+|+|+||||||+|||++|++||||||++|++
T Consensus 281 QCYDky~l~~L~~aA~~~G~p~WG~~gP~dAg~Yn~~P~~t~FF~~-~G~~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~ 359 (548)
T PLN02803 281 QCYDKYMRASLEASAEAIGKKDWGRGGPHDAGEYKQFPEETGFFRR-DGTWNTEYGQFFLEWYSGKLLEHGDRILAAAEG 359 (548)
T ss_pred eeccHHHHHHHHHHHHHhCCHhhccCCCCCcCcCCCCCCCCCCCCC-CCCccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 489999999999999999999999999999999
Q ss_pred ccCCCCcEEEEEeceeeecCCCCCChhhhccccccCCCCCChHHHHHHHHhCCceEEeeccccCCCCCCCCCCCChHHHH
Q 008086 397 TFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLL 476 (578)
Q Consensus 397 ~F~~~~v~l~~KV~GIHWwY~t~SHaAELTAGyYNt~~rdGY~~Ia~mfak~~~~l~ftc~Em~d~eqp~~~~s~Pe~Lv 476 (578)
+|++++|+|++|||||||||+|+|||||||||||||++||||.|||+|||||+|+|+||||||+|.+||++++|+||+||
T Consensus 360 ~F~g~~v~l~aKv~GIHWwY~t~SHaAElTAGyYNt~~rdGY~~Ia~mf~rh~~~l~FTClEM~D~eqp~~~~s~Pe~Lv 439 (548)
T PLN02803 360 IFQGTGAKLSGKVAGIHWHYRTRSHAAELTAGYYNTRNHDGYLPIARMFSKHGVVLNFTCMEMRDGEQPEHANCSPEGLV 439 (548)
T ss_pred hhCCCCceEEEEeceeeeecCCCCchhhhccccccCCCcccHHHHHHHHHHcCCeEEEEecCcccCCCCccccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeeeccccCCCCCcchHHHHHHhccCCC--ceeeEEEeecCcccCCCCChhhHHHHHHHhcCCCCCCCC
Q 008086 477 AQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGEN--VVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGDD 554 (578)
Q Consensus 477 ~QV~~aa~~~Gv~v~GENAl~~~d~~~~~qi~~~~~~~~--~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~~~~dd 554 (578)
+||+++|+++||+|+|||||++||.++|+||+++++++. .+.+||||||++.||+++||++|++|||+|++++.. ++
T Consensus 440 ~Qv~~aa~~~Gv~~aGENAL~~~d~~~~~qi~~~~~~~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~~-~~ 518 (548)
T PLN02803 440 RQVKMATRTAGTELAGENALERYDSAAFAQVVATSRSDSGNGLTAFTYLRMNKRLFEGDNWRQLVEFVKNMSEGGRN-RR 518 (548)
T ss_pred HHHHHHHHHcCCceeeeccccccCHHHHHHHHHhhcccccCceeeeEEecCChHHcChhhHHHHHHHHHHhcCcccc-Cc
Confidence 999999999999999999999999999999999987643 699999999999999999999999999999997654 56
Q ss_pred CCccccc
Q 008086 555 LPVEEEV 561 (578)
Q Consensus 555 ~p~~~~~ 561 (578)
+|..+..
T Consensus 519 ~~~~~~~ 525 (548)
T PLN02803 519 LPECDTE 525 (548)
T ss_pred cchhhcc
Confidence 6654433
No 3
>PLN02161 beta-amylase
Probab=100.00 E-value=5.1e-180 Score=1409.57 Aligned_cols=431 Identities=39% Similarity=0.736 Sum_probs=418.1
Q ss_pred CCCCCCCCCceEEEeeecceeeCC----CccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHH
Q 008086 83 SARPKSLDAVRLFVGLPLDTVSDA----NTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEM 158 (578)
Q Consensus 83 ~~~~~~~~~vpvyVmLPLd~V~~~----n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~m 158 (578)
..++...++||||||||||+|+.+ |+|+++++|+++|++||++||||||||||||+||+++|++|||++|++|++|
T Consensus 83 ~~~~~~~~~vpvyVMlPLD~V~~~~~~~~~v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~m 162 (531)
T PLN02161 83 VLVSSRHKRVPVFVMMPVDTFGIDASGCPKIKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRL 162 (531)
T ss_pred ccccccCCCeeEEEEeecceeccCcccccccCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHH
Confidence 456677889999999999999965 4899999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEEeeecCCC-----CCCCCChhhHhhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHH
Q 008086 159 VEKIGLKLHVSLCFHALKQ-----PKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFC 233 (578)
Q Consensus 159 v~~~GLKl~vvmsFH~cg~-----~~IpLP~WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm 233 (578)
|+++||||||||||||||+ |+||||+||+++|++|||||||||+|+||+||||||||++||++||||||+|+|||
T Consensus 163 vr~~GLKlq~vmSFHqCGGNvGd~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm 242 (531)
T PLN02161 163 ISEAGLKLHVALCFHSNMHLFGGKGGISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFM 242 (531)
T ss_pred HHHcCCeEEEEEEecccCCCCCCccCccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHH
Confidence 9999999999999999974 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhchhcCCceEeecccccccccccccccccccccccccccccccccceeecccCCCccCCCCcccCCCCCcCCCC
Q 008086 234 ESFKSSFKPFMGTTITVRSFDFKQCQVHTISDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGV 313 (578)
Q Consensus 234 ~SF~~~f~~~~g~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eI~VGLGP~GELRYPSy~~~~~~w~~PGi 313 (578)
+|||++|++|++++|+ ||+|||||||||||||||+++++|+||||
T Consensus 243 ~SFr~~F~~~~~~~I~-----------------------------------eI~VGlGP~GELRYPSYp~~~g~w~fPGi 287 (531)
T PLN02161 243 LSFSTKFEPYIGNVIE-----------------------------------EISIGLGPSGELRYPAHPSGDGRWKFPGI 287 (531)
T ss_pred HHHHHHHHHHhcCceE-----------------------------------EEEeccccCccccCCCCcCcCCCccCCCc
Confidence 9999999999999999 99999999999999999998888999999
Q ss_pred cccccccHHHHHHHHHHHHHcCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 008086 314 GEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSL 393 (578)
Q Consensus 314 GEFQCYDk~~~~~l~~~a~a~gn~~WG~~gP~da~~Yn~~P~~t~FF~~~gg~~~s~YG~FFL~WYs~~Li~Hgd~iL~~ 393 (578)
||||||||||+++||++|+++|||+||++||||||.||+.|++|+||++++|+|+|+||||||+|||++|++||||||++
T Consensus 288 GEFQCYDky~l~~L~~~A~~~G~p~WG~~gP~dAg~Yn~~P~~t~FF~~~~gs~~S~YG~FFL~WYs~~Ll~HgdrvL~~ 367 (531)
T PLN02161 288 GEFQCHDKYMMEDLMAVASQEGKPQWGSRDPPNTGCYNSFPSGVPFFEEGNDSFLSDYGRFFLEWYSGKLICHADAILAK 367 (531)
T ss_pred ceeeeccHHHHHHHHHHHHHhCCHhhccCCCCCCcccCCCCCCCCCCcCCCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987789999999999999999999999999999
Q ss_pred HhhccCC------CCcEEEEEeceeeecCCCCCChhhhccccccCCCCCChHHHHHHHHhCCceEEeeccccCCCCCCCC
Q 008086 394 ASSTFGE------TGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRE 467 (578)
Q Consensus 394 A~~~F~~------~~v~l~~KV~GIHWwY~t~SHaAELTAGyYNt~~rdGY~~Ia~mfak~~~~l~ftc~Em~d~eqp~~ 467 (578)
|+++|++ ++|+|++|||||||||+|+|||||||||||||++||||.|||+|||||+|+|+||||||+|.+||++
T Consensus 368 A~~~F~~~~~~~~~~v~l~aKv~GIHWwY~t~SHaAElTAGyYN~~~rDGY~~Ia~m~~rh~~~l~FTClEM~D~eq~~~ 447 (531)
T PLN02161 368 AADVLRRRQESEKSSVMLVAKIGGIYWWYKTSSHPAELTAGYYNTALRDGYDPVASVLSRHGAALHIPCLDMADSETPEK 447 (531)
T ss_pred HHHHhccccccCCCcceEEEEeccccccCCCCCchhhhccccccCCcccchHHHHHHHHHcCceEEEEeccccCCCCCcc
Confidence 9999975 6899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhcCCeeeccccCCCCCcchHHHHHHhccCCC--ceeeEEEeecCcccCCCCChhhHHHHHHHh
Q 008086 468 SFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGEN--VVDLFTYQRMGAYFFSPEHFPSFTKFVRNL 545 (578)
Q Consensus 468 ~~s~Pe~Lv~QV~~aa~~~Gv~v~GENAl~~~d~~~~~qi~~~~~~~~--~~~~FTylRm~~~lf~~~n~~~F~~FVr~m 545 (578)
+.|+||+||+||+++|+++||+|+|||||++||..+|+||++|++..+ .+.+||||||++.||+++||++|++|||+|
T Consensus 448 ~~s~Pe~Lv~QV~~aa~~~Gv~~aGENAL~~~D~~~~~qi~~n~~~~~~~~l~~FTylRm~~~lf~~~n~~~F~~FVr~M 527 (531)
T PLN02161 448 YLCSPEGLRQQIHDVSKKWTIHVTGRNTSERFDEMGLRQIRENCVQPNGDTLRSFTFCRMNEKIFRAENWNNFVPFIRQM 527 (531)
T ss_pred ccCCHHHHHHHHHHHHHHcCCceeecccccccChhHHHHHHHHhcCCCCCceeeEEEEcCChhhcChhhHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999986554 489999999999999999999999999999
Q ss_pred cCC
Q 008086 546 NQL 548 (578)
Q Consensus 546 ~~~ 548 (578)
|+.
T Consensus 528 ~~~ 530 (531)
T PLN02161 528 SAD 530 (531)
T ss_pred hCC
Confidence 973
No 4
>PLN02801 beta-amylase
Probab=100.00 E-value=3.4e-179 Score=1403.18 Aligned_cols=426 Identities=35% Similarity=0.701 Sum_probs=414.4
Q ss_pred CCCCCCCCceEEEeeecceeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcC
Q 008086 84 ARPKSLDAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIG 163 (578)
Q Consensus 84 ~~~~~~~~vpvyVmLPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~G 163 (578)
...+..++||||||||||+|+++|+|+++++++++|++||++||||||||||||+||+++|++|||++|++|++|||++|
T Consensus 8 ~~~~~~~~vpvyVMlPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~G 87 (517)
T PLN02801 8 EEKMLANYVPVYVMLPLGVVTADNVLEDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFG 87 (517)
T ss_pred cccccCCceeEEEeeecceecCCCccCCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcC
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeeecCCC-----CCCCCChhhHhhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHH
Q 008086 164 LKLHVSLCFHALKQ-----PKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKS 238 (578)
Q Consensus 164 LKl~vvmsFH~cg~-----~~IpLP~WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~ 238 (578)
|||||||||||||+ |+||||+||+++|++|||||||||+|+||+||||||||++||++||||||+|+|||+|||+
T Consensus 88 LKlq~vmSFHqCGGNVGD~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~ 167 (517)
T PLN02801 88 LKIQAIMSFHQCGGNVGDAVNIPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRE 167 (517)
T ss_pred CeEEEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHH
Confidence 99999999999985 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhcC-CceEeecccccccccccccccccccccccccccccccccceeecccCCCccCCCCcccCCCCCcCCCCcccc
Q 008086 239 SFKPFMG-TTITVRSFDFKQCQVHTISDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQ 317 (578)
Q Consensus 239 ~f~~~~g-~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eI~VGLGP~GELRYPSy~~~~~~w~~PGiGEFQ 317 (578)
+|++|++ .+|+ +|+|||||||||||||||++. +|+||||||||
T Consensus 168 ~F~~~l~~~~I~-----------------------------------eI~VGlGP~GELRYPSYp~~~-gW~fpGiGEFQ 211 (517)
T PLN02801 168 NMADFLEAGVII-----------------------------------DIEVGLGPAGELRYPSYPETQ-GWVFPGIGEFQ 211 (517)
T ss_pred HHHHhccCCeeE-----------------------------------EEEEcccccccccCCCCcCCC-CCCCCCcceee
Confidence 9999997 4899 999999999999999999965 59999999999
Q ss_pred cccHHHHHHHHHHHHHcCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 008086 318 CCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASST 397 (578)
Q Consensus 318 CYDk~~~~~l~~~a~a~gn~~WG~~gP~da~~Yn~~P~~t~FF~~~gg~~~s~YG~FFL~WYs~~Li~Hgd~iL~~A~~~ 397 (578)
||||||+++||++|+++|||+||+ |||||+||++|++|+||++ +|+|+|+||||||+|||++|++||||||++|+++
T Consensus 212 CYDky~~~~l~~aA~~~G~p~Wg~--P~dag~Yn~~P~~t~FF~~-~G~~~s~YG~FFL~WYs~~Ll~HgdrvL~~A~~~ 288 (517)
T PLN02801 212 CYDKYLKADFKEAATEAGHPEWEL--PDDAGEYNDTPEDTGFFKS-NGTYLTEEGKFFLTWYSNKLLLHGDQILDEANKA 288 (517)
T ss_pred eccHHHHHHHHHHHHhcCCcccCC--CCCCCcccCCCCCCCCCCC-CCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999995 9999999999999999997 5899999999999999999999999999999999
Q ss_pred cCCCCcEEEEEeceeeecCCCCCChhhhccccccCCCCCChHHHHHHHHhCCceEEeeccccCCCCCCCCCCCChHHHHH
Q 008086 398 FGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLA 477 (578)
Q Consensus 398 F~~~~v~l~~KV~GIHWwY~t~SHaAELTAGyYNt~~rdGY~~Ia~mfak~~~~l~ftc~Em~d~eqp~~~~s~Pe~Lv~ 477 (578)
|++++|+|++|||||||||+|+||||||||||||+++||||.|||+|||||+|+|+||||||+|.+||++++|+||+||+
T Consensus 289 F~g~~v~l~aKvaGIHWwY~t~SHaAElTAGyYN~~~rDGY~pIa~m~~rh~~~l~FTClEM~D~eq~~~~~s~PE~Lv~ 368 (517)
T PLN02801 289 FLGCKVKLAAKVSGIHWWYKHHSHAAELTAGYYNLKGRDGYRPIARMLSRHYGILNFTCLEMRDTEQPAEALSAPQELVQ 368 (517)
T ss_pred hCCCCceEEEEeceeeeecCCCCchHhhccccccCCCccchHHHHHHHHHcCCeEEEeecccccCCCCcccCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeeeccccCCCCCcchHHHHHHhccCCC---------ceeeEEEeecCcccCCCCChhhHHHHHHHhcCC
Q 008086 478 QIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGEN---------VVDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQL 548 (578)
Q Consensus 478 QV~~aa~~~Gv~v~GENAl~~~d~~~~~qi~~~~~~~~---------~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~ 548 (578)
||+++|+++||+|+|||||+++|+++|+||++|+++++ .+.+||||||++.||+++||++|++|||+||+.
T Consensus 369 QV~~aa~~~Gv~vaGENAL~~~D~~~y~qi~~~a~~~~~~~~g~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~ 448 (517)
T PLN02801 369 QVLSGAWREGIEVAGENALSRYDRRGYNQILLNARPNGVNKDGKPKLRMFGVTYLRLSDELLEETNFSLFKTFVRKMHAD 448 (517)
T ss_pred HHHHHHHHcCCcEeeeccccccCHHHHHHHHHHhhhccCCcccccccceeeEEEecCchHhcCcchHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999987543 388999999999999999999999999999974
No 5
>PLN02905 beta-amylase
Probab=100.00 E-value=3.5e-177 Score=1408.83 Aligned_cols=428 Identities=37% Similarity=0.694 Sum_probs=413.4
Q ss_pred CCCCCCCCCCCceEEEeeecceeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHH
Q 008086 81 LSSARPKSLDAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVE 160 (578)
Q Consensus 81 ~~~~~~~~~~~vpvyVmLPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~ 160 (578)
+.........+||||||||||+|+++|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+||+
T Consensus 254 ~~~~~~~~~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr 333 (702)
T PLN02905 254 LTERDFAGTPYVPVYVMLPLGVINMKCELADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVR 333 (702)
T ss_pred cccccccCCCceeEEEEeecceecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHH
Confidence 34445566678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcEEEEEeeecCCC-----CCCCCChhhHhhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHH
Q 008086 161 KIGLKLHVSLCFHALKQ-----PKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCES 235 (578)
Q Consensus 161 ~~GLKl~vvmsFH~cg~-----~~IpLP~WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~S 235 (578)
++||||||||||||||+ |+||||+||++++++|||||||||+|+||+||||||+|++|||+||||||+|+|||+|
T Consensus 334 ~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~S 413 (702)
T PLN02905 334 ELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRS 413 (702)
T ss_pred HcCCeEEEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHH
Confidence 99999999999999985 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhchhcCC-ceEeecccccccccccccccccccccccccccccccccceeecccCCCccCCCCcccCCCCCcCCCCc
Q 008086 236 FKSSFKPFMGT-TITVRSFDFKQCQVHTISDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVG 314 (578)
Q Consensus 236 F~~~f~~~~g~-~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eI~VGLGP~GELRYPSy~~~~~~w~~PGiG 314 (578)
||++|++|+++ +|+ +|+|||||||||||||||++. +|+|||||
T Consensus 414 Fr~~F~~fl~~g~I~-----------------------------------eI~VGLGPaGELRYPSYp~s~-GW~fPGiG 457 (702)
T PLN02905 414 FRVEFDEFFEDGVIS-----------------------------------MVEVGLGPCGELRYPSCPVKH-GWRYPGIG 457 (702)
T ss_pred HHHHHHHHhcCCceE-----------------------------------EEEeccCCCccccCCCCcCcC-CCCCCCcc
Confidence 99999999976 888 999999999999999999954 59999999
Q ss_pred ccccccHHHHHHHHHHHHHcCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 008086 315 EFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLA 394 (578)
Q Consensus 315 EFQCYDk~~~~~l~~~a~a~gn~~WG~~gP~da~~Yn~~P~~t~FF~~~gg~~~s~YG~FFL~WYs~~Li~Hgd~iL~~A 394 (578)
|||||||||+++||++|+++|||+||+ ||||||+||++|++|+||++ +|+|+|+||||||+|||++|++||||||++|
T Consensus 458 EFQCYDKymla~Lk~aA~a~GhpeWG~-gP~dAG~YN~~P~~TgFF~~-~Gsw~S~YGkFFLsWYS~~Ll~HGDrVLs~A 535 (702)
T PLN02905 458 EFQCYDQYLLKSLRKAAEARGHLFWAR-GPDNTGSYNSQPHETGFFCD-GGDYDGYYGRFFLNWYSQVLVDHGDRVLSLA 535 (702)
T ss_pred eeeeccHHHHHHHHHHHHHhCcHhhcc-CCCCCCccCCCCCCCCCCCC-CCcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 99999999999999999997 6899999999999999999999999999999
Q ss_pred hhccCCCCcEEEEEeceeeecCCCCCChhhhccccccCCCCCChHHHHHHHHhCCceEEeeccccCCCCCCC---CCCCC
Q 008086 395 SSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPR---ESFSS 471 (578)
Q Consensus 395 ~~~F~~~~v~l~~KV~GIHWwY~t~SHaAELTAGyYNt~~rdGY~~Ia~mfak~~~~l~ftc~Em~d~eqp~---~~~s~ 471 (578)
+.+|++ ++|++|||||||||+|+|||||||||||||++||||.|||+|||||+|+|+||||||+|.+||+ +++|+
T Consensus 536 ~~vF~g--~~LaaKVaGIHWWY~t~SHAAELTAGYYNt~~rDGY~pIa~mfarh~~~l~FTClEM~D~eqp~~~~~a~ss 613 (702)
T PLN02905 536 KLAFEG--TCIAAKLPGVHWWYKTASHAAELTAGFYNPCNRDGYAAIASMLKKHGAALNFVCGEVQMLNRPDDFSEALGD 613 (702)
T ss_pred HHhcCC--CeEEEEeccccccCCCCCchHhhccccccCCCcccHHHHHHHHHHcCCeEEEEecccccCCCCCccccccCC
Confidence 999986 6999999999999999999999999999999999999999999999999999999999999986 89999
Q ss_pred hHHHHHHHHHHHHhcCCeeeccccCCCCCcchHHHHHHhccCCC-----ceeeEEEeecCcccCCCCChhhHHHHHHHhc
Q 008086 472 PESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGEN-----VVDLFTYQRMGAYFFSPEHFPSFTKFVRNLN 546 (578)
Q Consensus 472 Pe~Lv~QV~~aa~~~Gv~v~GENAl~~~d~~~~~qi~~~~~~~~-----~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~ 546 (578)
||+||+||+++|+++||+|+|||||++||.++|+||++++++++ .+.+||||||++.||+++||++|++|||+||
T Consensus 614 PE~LV~QV~~aA~~~GV~vaGENAL~r~D~~ay~qI~~na~~~~~~~~~~l~~FTYLRm~~~lf~~~nf~~F~~FVr~M~ 693 (702)
T PLN02905 614 PEGLAWQVLNAAWDVDTPVASENSLPCHDRVGYNKILENAKPLNDPDGRHFSSFTYLRLSPLLMERHNFVEFERFVKRMH 693 (702)
T ss_pred HHHHHHHHHHHHHHhCCceeccccccccCHHHHHHHHHHhhcccCCccCceeeeEEecCchhhcCcchHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988753 4899999999999999999999999999999
Q ss_pred CC
Q 008086 547 QL 548 (578)
Q Consensus 547 ~~ 548 (578)
+.
T Consensus 694 ~~ 695 (702)
T PLN02905 694 GE 695 (702)
T ss_pred cc
Confidence 85
No 6
>PLN02705 beta-amylase
Probab=100.00 E-value=2.5e-176 Score=1399.24 Aligned_cols=432 Identities=33% Similarity=0.605 Sum_probs=415.4
Q ss_pred CCCCCCCCCCCCCCceEEEeeecceeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHH
Q 008086 78 SGPLSSARPKSLDAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAE 157 (578)
Q Consensus 78 ~~~~~~~~~~~~~~vpvyVmLPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~ 157 (578)
+++....+....++||||||||||+|+++|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+
T Consensus 233 ~~~~~~~~~~~~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~ 312 (681)
T PLN02705 233 HSGEHENDFTETFYVPVYVMLAVGIINNFCQLVDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFN 312 (681)
T ss_pred CCCCCccCcCCCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHH
Confidence 34445556667778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEEeeecCCC-----CCCCCChhhHhhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHH
Q 008086 158 MVEKIGLKLHVSLCFHALKQ-----PKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEF 232 (578)
Q Consensus 158 mv~~~GLKl~vvmsFH~cg~-----~~IpLP~WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~df 232 (578)
||+++||||||||||||||+ |+||||+||+++|+++||||||||+|+||+||||||+|++|||+||||||+|+||
T Consensus 313 mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DF 392 (681)
T PLN02705 313 IIREFKLKLQVVMAFHEYGGNASGNVMISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDF 392 (681)
T ss_pred HHHHcCCeEEEEEEeeccCCCCCCcccccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHH
Confidence 99999999999999999985 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhchhcCC-ceEeecccccccccccccccccccccccccccccccccceeecccCCCccCCCCcccCCCCCcCC
Q 008086 233 CESFKSSFKPFMGT-TITVRSFDFKQCQVHTISDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIP 311 (578)
Q Consensus 233 m~SF~~~f~~~~g~-~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eI~VGLGP~GELRYPSy~~~~~~w~~P 311 (578)
|+|||++|++|+++ +|+ ||+|||||||||||||||+.. +|+||
T Consensus 393 M~SFr~~F~~fl~~g~I~-----------------------------------eI~VGLGP~GELRYPSYp~~~-gW~fP 436 (681)
T PLN02705 393 MRSFRSEFDDLFVEGLIT-----------------------------------AVEIGLGASGELKYPSFPERM-GWIYP 436 (681)
T ss_pred HHHHHHHHHHhccCCcee-----------------------------------EEEeccCCCccccCCCCcccC-CCCCC
Confidence 99999999999976 888 999999999999999999964 69999
Q ss_pred CCcccccccHHHHHHHHHHHHHcCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCchhhhHHHHHHHHHHHHHHHHH
Q 008086 312 GVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLL 391 (578)
Q Consensus 312 GiGEFQCYDk~~~~~l~~~a~a~gn~~WG~~gP~da~~Yn~~P~~t~FF~~~gg~~~s~YG~FFL~WYs~~Li~Hgd~iL 391 (578)
||||||||||||+++|+++|+++|||+||+ ||||||.||++|++|+||+++ |+|+|+||||||+|||++|++||||||
T Consensus 437 GiGEFQCYDkymla~Lk~aA~a~GhpeWG~-gP~dAg~YN~~P~~tgFF~~~-G~w~S~YGkFFLsWYS~~Ll~HGDrVL 514 (681)
T PLN02705 437 GIGEFQCYDKYSQQNLRKAAKSRGHSFWAR-GPDNAGQYNSRPHETGFFCER-GDYDSYYGRFFLHWYSQLLIDHADNVL 514 (681)
T ss_pred CcceeeeccHHHHHHHHHHHHHhCcHhhcc-CCCCccccCCCCCCCCCCCCC-CCcccccchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997 999999999999999999985 689999999999999999999999999
Q ss_pred HHHhhccCCCCcEEEEEeceeeecCCCCCChhhhccccccCCCCCChHHHHHHHHhCCceEEeeccccCCCCC-CCCCCC
Q 008086 392 SLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQ-PRESFS 470 (578)
Q Consensus 392 ~~A~~~F~~~~v~l~~KV~GIHWwY~t~SHaAELTAGyYNt~~rdGY~~Ia~mfak~~~~l~ftc~Em~d~eq-p~~~~s 470 (578)
++|+.+|++ ++|++|||||||||+|+|||||||||||||++||||.+||+|||||+|+|+|||+||+|.+| |.+++|
T Consensus 515 s~A~~vF~~--~~LsaKVaGIHWWY~t~SHAAELTAGYYNt~~rDGY~pIa~mfarh~~~l~FTC~eMe~~d~~~~~a~s 592 (681)
T PLN02705 515 SLANLAFEE--TKIIVKIPAVYWWYKTASHAAELTAGYYNPTNQDGYSPVFETLKKHSVTVKFVCSGLQMSPNENDEALA 592 (681)
T ss_pred HHHHHhcCC--CeEEEEeccccccCCCCCchhhhccccccCCCcccHHHHHHHHHHcCceEEEEeccccccCCCCCccCC
Confidence 999999986 79999999999999999999999999999999999999999999999999999999999986 889999
Q ss_pred ChHHHHHHHHHHHHhcCCeeeccccCCCCCcchHHHHHHhccCCC-----ceeeEEEeecCcccCCCCChhhHHHHHHHh
Q 008086 471 SPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGEN-----VVDLFTYQRMGAYFFSPEHFPSFTKFVRNL 545 (578)
Q Consensus 471 ~Pe~Lv~QV~~aa~~~Gv~v~GENAl~~~d~~~~~qi~~~~~~~~-----~~~~FTylRm~~~lf~~~n~~~F~~FVr~m 545 (578)
+||+||+||+++|+++||+|+|||||++||.++|+||++|+++++ .+.+||||||++.||+++||+.|++|||+|
T Consensus 593 ~PE~LV~QV~~aA~~~Gv~vaGENAL~~~D~~ay~qI~~na~~~~~~~~~~~~~FTYlRm~~~lf~~~n~~~F~~FVr~M 672 (681)
T PLN02705 593 DPEGLSWQVLNSAWDRGLTVAGENAITCYDREGCMRLIEIAKPRNHPDHYHFSFFVYQQPSPLVQGTTCFPELDYFIKCM 672 (681)
T ss_pred CHHHHHHHHHHHHHHcCCceeecccccccCHHHHHHHHHHhcccCCCcccceeeeEEecCchHhcCcccHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998754 488999999999999999999999999999
Q ss_pred cCCC
Q 008086 546 NQLE 549 (578)
Q Consensus 546 ~~~~ 549 (578)
|+..
T Consensus 673 ~~~~ 676 (681)
T PLN02705 673 HGDI 676 (681)
T ss_pred cccc
Confidence 9753
No 7
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=100.00 E-value=4.8e-158 Score=1221.11 Aligned_cols=387 Identities=50% Similarity=0.923 Sum_probs=331.1
Q ss_pred EEeeecceeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeec
Q 008086 95 FVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHA 174 (578)
Q Consensus 95 yVmLPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~ 174 (578)
|||||||+|++++.++ +++++|++||++||||||+|||||+||+++|++|||++|++|++|||++||||||||||||
T Consensus 1 yVmlPLd~v~~~~~~~---~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~vmsfH~ 77 (402)
T PF01373_consen 1 YVMLPLDTVTDDNDWN---ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQVVMSFHQ 77 (402)
T ss_dssp EEE--TTSSCTTSECH---HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEEEEE-S-
T ss_pred CceeeeeeecCCCcHH---HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 8999999999999888 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-----CCCCCChhhHhhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhchhcCCceE
Q 008086 175 LKQ-----PKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTIT 249 (578)
Q Consensus 175 cg~-----~~IpLP~WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~g~~I~ 249 (578)
||+ |+||||.||+++++++ ||+||||+|+||+|||| ||++||| +|+|+|||+|||++|++|+ ++|+
T Consensus 78 cGgNvgD~~~IpLP~Wv~~~~~~~-di~ytd~~G~rn~E~lS------p~~~grt-~~~Y~dfm~sF~~~f~~~~-~~I~ 148 (402)
T PF01373_consen 78 CGGNVGDDCNIPLPSWVWEIGKKD-DIFYTDRSGNRNKEYLS------PVLDGRT-LQCYSDFMRSFRDNFSDYL-STIT 148 (402)
T ss_dssp BSSSTTSSSEB-S-HHHHHHHHHS-GGEEE-TTS-EEEEEE-------CTBTTBC-HHHHHHHHHHHHHHCHHHH-TGEE
T ss_pred CCCCCCCccCCcCCHHHHhccccC-CcEEECCCCCcCcceee------cccCCch-HHHHHHHHHHHHHHHHHHH-hhhe
Confidence 984 8999999999999999 99999999999999999 9999999 9999999999999999999 8999
Q ss_pred eecccccccccccccccccccccccccccccccccceeecccCCCccCCCCcccCCCCCcCCCCcccccccHHHHHHHHH
Q 008086 250 VRSFDFKQCQVHTISDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQ 329 (578)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eI~VGLGP~GELRYPSy~~~~~~w~~PGiGEFQCYDk~~~~~l~~ 329 (578)
+|+|||||||||||||||++++ |+||||||||||||||+++||+
T Consensus 149 -----------------------------------~I~vglGP~GELRYPSy~~~~g-w~~pgiGeFQcYDk~~~~~l~~ 192 (402)
T PF01373_consen 149 -----------------------------------EIQVGLGPAGELRYPSYPESDG-WRFPGIGEFQCYDKYMLASLRA 192 (402)
T ss_dssp -----------------------------------EEEE--SGGGBSS-S-S-GGGT-B-TTS-----B-SHHHHHHHHH
T ss_pred -----------------------------------EEEeccCCcceeccCCCCCCCC-CcCCCcceeeeccHHHHHHHHH
Confidence 9999999999999999999875 9999999999999999999999
Q ss_pred HHH------HcCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhccCCC-C
Q 008086 330 HAE------ANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGET-G 402 (578)
Q Consensus 330 ~a~------a~gn~~WG~~gP~da~~Yn~~P~~t~FF~~~gg~~~s~YG~FFL~WYs~~Li~Hgd~iL~~A~~~F~~~-~ 402 (578)
+|+ +.+||+||++|||++ ||++|++++||++ +|+|+|+||||||+|||++|++||||||++|+.+|+++ +
T Consensus 193 ~a~~kyg~~~~~~~~Wg~~gp~~~--y~~~P~~t~fF~~-~G~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~~ 269 (402)
T PF01373_consen 193 AAEAKYGSLGAGNPAWGLSGPHDA--YNSPPEDTGFFRD-NGSWDSPYGKFFLSWYSGMLIDHGDRVLSLARSVFDGTFG 269 (402)
T ss_dssp HHHHHTTCCTCTCTTHTS-SSSGG--TT-SGGGSTTTST-TCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHS
T ss_pred HHHHhhhhhccccccCCCCCCChh--hcCCCCCCCCccc-CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 999 888999999999999 9999999999999 47999999999999999999999999999999999999 9
Q ss_pred cEEEEEeceeeecCC--CCCChhhhccccccCCCCCChHHHHHHHHhCCceEEeeccccCCCC-CCCCCCCChHHHHHHH
Q 008086 403 VSIYGKIPLIHSWYK--TRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEH-QPRESFSSPESLLAQI 479 (578)
Q Consensus 403 v~l~~KV~GIHWwY~--t~SHaAELTAGyYNt~~rdGY~~Ia~mfak~~~~l~ftc~Em~d~e-qp~~~~s~Pe~Lv~QV 479 (578)
|+|++|||||||||+ |+|||||||||||| |.|||+|||||+|+|+||||||+|.+ +|. .|+||+||+||
T Consensus 270 v~l~aKv~GIHWwy~~pt~sHaAElTAGyyN------Y~~Ia~mf~kh~~~l~fTClEM~d~~~~p~--~s~Pe~Lv~QV 341 (402)
T PF01373_consen 270 VKLSAKVPGIHWWYNSPTRSHAAELTAGYYN------YSPIARMFKKHGVTLNFTCLEMRDSEEQPE--YSSPEGLVRQV 341 (402)
T ss_dssp -EEEEEEE---TTTTSTSTTTHHHHHHT-S-------SHHHHHHHHTTT-EEEES-TT--GGSGSCG--GG-HHHHHHHH
T ss_pred ceEEEEecceeeccCCCCCCChHHHhccccC------HHHHHHHHHHcCcEEEEEeccccCCCCCCC--CCCHHHHHHHH
Confidence 999999999999999 99999999999999 99999999999999999999999994 444 56999999999
Q ss_pred HHHHHhcCCeeeccccCCCCCcchHHHHHHhccCCCceeeEEEeecCcccCCCCChhhHHHH
Q 008086 480 RTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVVDLFTYQRMGAYFFSPEHFPSFTKF 541 (578)
Q Consensus 480 ~~aa~~~Gv~v~GENAl~~~d~~~~~qi~~~~~~~~~~~~FTylRm~~~lf~~~n~~~F~~F 541 (578)
+++|+++||+|+|||||+++|+++|+||+++++..+ +.+||||||++.||+++||++|++|
T Consensus 342 ~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~~~~-~~gFTyLRm~~~lf~~~n~~~F~~F 402 (402)
T PF01373_consen 342 LNAAWRHGVPVAGENALPRYDNGAYNQILENAKGYN-YSGFTYLRMGDVLFEGDNWSRFVRF 402 (402)
T ss_dssp HHHHHHTT-EEEEE-SS---SHHHHHHHHHHHTHTT-TTSEEES-HCHHHHSHHHHHHHHHH
T ss_pred HHHHHHcCCCEeeeeCccccCHHHHHHHHHHhhccC-CCCeEEEccChHhcCcccHHhccCC
Confidence 999999999999999999999999999999987644 6789999999999999999999998
No 8
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.74 E-value=9.5e-18 Score=170.79 Aligned_cols=212 Identities=18% Similarity=0.268 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHcCcceEEecc-eeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhhHhhh
Q 008086 112 AKAIAAGLKALKLLGVEGVELPV-WWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIG 190 (578)
Q Consensus 112 ~~a~~~~L~~LK~~GV~GV~vdV-WWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~~~g 190 (578)
.+.|+++|+.||++|++-|.+.+ -|..+|++ +|+|||+.+++++++++++|||| ||++ ++...|.|+.+
T Consensus 9 ~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~-eG~ydF~~lD~~l~~a~~~Gi~v--iL~~-----~~~~~P~Wl~~-- 78 (374)
T PF02449_consen 9 EEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPE-EGQYDFSWLDRVLDLAAKHGIKV--ILGT-----PTAAPPAWLYD-- 78 (374)
T ss_dssp CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SB-TTB---HHHHHHHHHHHCTT-EE--EEEE-----CTTTS-HHHHC--
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEechhhccCC-CCeeecHHHHHHHHHHHhccCeE--EEEe-----cccccccchhh--
Confidence 46899999999999999999865 59999997 99999999999999999999998 8888 77889999986
Q ss_pred ccCCCeeeecCCCCccccccccccCcccccCCC----ChhHHHHHHHHHHHHhhchhcCC--ceEeeccccccccccccc
Q 008086 191 ESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGK----TPIQVYQEFCESFKSSFKPFMGT--TITVRSFDFKQCQVHTIS 264 (578)
Q Consensus 191 ~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GR----Tpiq~Y~dfm~SF~~~f~~~~g~--~I~~~~~~~~~~~~~~~~ 264 (578)
++|++..+|++|++. ..++| ...+.|+++++.|.+++...+++ .|+
T Consensus 79 -~~Pe~~~~~~~g~~~------------~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi--------------- 130 (374)
T PF02449_consen 79 -KYPEILPVDADGRRR------------GFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVI--------------- 130 (374)
T ss_dssp -CSGCCC-B-TTTSBE------------ECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEE---------------
T ss_pred -hcccccccCCCCCcC------------ccCCccccchhHHHHHHHHHHHHHHHHhhccccceEE---------------
Confidence 899999999999874 22222 24678999999999999888775 455
Q ss_pred ccccccccccccccccccccceeecccCCCccCCCCcccCCCCCcCCCCcccccccHHHHHHHHHHHH------HcCCCc
Q 008086 265 DLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAE------ANGNPL 338 (578)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~eI~VGLGP~GELRYPSy~~~~~~w~~PGiGEFQCYDk~~~~~l~~~a~------a~gn~~ 338 (578)
.++|.=.| |.+ .||++.+++.|+++++ +++|.+
T Consensus 131 --------------------~~~i~NE~-------------------~~~--~~~~~~~~~~f~~wLk~kY~ti~~LN~a 169 (374)
T PF02449_consen 131 --------------------GWQIDNEP-------------------GYH--RCYSPACQAAFRQWLKEKYGTIEALNRA 169 (374)
T ss_dssp --------------------EEEECCST-------------------TCT--S--SHHHHHHHHHHHHHHHSSHHHHHHH
T ss_pred --------------------EEEecccc-------------------CcC--cCCChHHHHHHHHHHHHHhCCHHHHHHH
Confidence 44443222 222 7999999999999998 899999
Q ss_pred cCCCCCCCCCCCC---C--CCCCCCcccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEecee
Q 008086 339 WGLRGPHDAPSYD---E--SPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLI 412 (578)
Q Consensus 339 WG~~gP~da~~Yn---~--~P~~t~FF~~~gg~~~s~YG~FFL~WYs~~Li~Hgd~iL~~A~~~F~~~~v~l~~KV~GI 412 (578)
||+.+ ++.+|+ + +|.......++ ....+|-+|. +..+.+.-..+....+.+-. +..|..+.-+.
T Consensus 170 Wgt~~--ws~~~~~f~~v~~P~~~~~~~~~--~~~~D~~rF~----~~~~~~~~~~~~~~ir~~~p--~~~vt~n~~~~ 238 (374)
T PF02449_consen 170 WGTAF--WSQRYSSFDEVPPPRPTSSPENP--AQWLDWYRFQ----SDRVAEFFRWQADIIREYDP--DHPVTTNFMGS 238 (374)
T ss_dssp HTTTG--GG---SSGGG---S-S-SS---H--HHHHHHHHHH----HHHHHHHHHHHHHHHHHHST--T-EEE-EE-TT
T ss_pred HcCCc--ccCccCcHHhcCCCCCCCCCCCh--HHHHHHHHHH----HHHHHHHHHHHHHHHHHhCC--CceEEeCcccc
Confidence 99975 556666 2 56655533332 3444555554 45555555555555555543 34556666655
No 9
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=1.3e-11 Score=137.07 Aligned_cols=205 Identities=22% Similarity=0.342 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHcCcceEEe-cceeeccccCCCccccchHHHHH-HHHHHHcCCcEEEEEeeecCCCCCCCCChhhHhh
Q 008086 112 AKAIAAGLKALKLLGVEGVEL-PVWWGVAEKEAMGKYNWSGYLAV-AEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQI 189 (578)
Q Consensus 112 ~~a~~~~L~~LK~~GV~GV~v-dVWWGivE~~~p~~YdWsgY~~l-~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~~~ 189 (578)
...|+.+|+.||++|++.|++ .+-|+..|++ .|+|||++.+.. ++|+++.||++ ||++ +|+-..|.|+.+
T Consensus 29 ~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~-eG~fdf~~~D~~~l~~a~~~Gl~v--il~t----~P~g~~P~Wl~~- 100 (673)
T COG1874 29 RETWMDDLRKMKALGLNTVRIGYFAWNLHEPE-EGKFDFTWLDEIFLERAYKAGLYV--ILRT----GPTGAPPAWLAK- 100 (673)
T ss_pred HHHHHHHHHHHHHhCCCeeEeeeEEeeccCcc-ccccCcccchHHHHHHHHhcCceE--EEec----CCCCCCchHHhc-
Confidence 478999999999999999999 6669999998 999999999999 99999999999 8888 467789999999
Q ss_pred hccCCCeeeecCCCCccccccccccCcccccCCCC---h-hHHHHHHHHHHHHhhchh-cCCceEeeccccccccccccc
Q 008086 190 GESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKT---P-IQVYQEFCESFKSSFKPF-MGTTITVRSFDFKQCQVHTIS 264 (578)
Q Consensus 190 g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRT---p-iq~Y~dfm~SF~~~f~~~-~g~~I~~~~~~~~~~~~~~~~ 264 (578)
++|+|+.+|..|... ...+|. | ...|+++.+...+..++. +++.+.|
T Consensus 101 --~~PeiL~~~~~~~~~------------~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v-------------- 152 (673)
T COG1874 101 --KYPEILAVDENGRVR------------SDGARENICPVSPVYREYLDRILQQIRERLYGNGPAV-------------- 152 (673)
T ss_pred --CChhheEecCCCccc------------CCCcccccccccHHHHHHHHHHHHHHHHHHhccCCce--------------
Confidence 899999999998875 667773 2 236999999877778777 6653221
Q ss_pred ccccccccccccccccccccceeecccCCCccCCCCcccCCCCCcCCCCcccccccHHHHHHHHHHHH------HcCCCc
Q 008086 265 DLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAE------ANGNPL 338 (578)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~eI~VGLGP~GELRYPSy~~~~~~w~~PGiGEFQCYDk~~~~~l~~~a~------a~gn~~ 338 (578)
+.|.+ |+ -|++| -||.+++.+.|+.|++ ...|..
T Consensus 153 ---~~w~~--------dn--------------eY~~~---------------~~~~~~~~~~f~~wLk~~yg~l~~ln~~ 192 (673)
T COG1874 153 ---ITWQN--------DN--------------EYGGH---------------PCYCDYCQAAFRLWLKKGYGSLDNLNEA 192 (673)
T ss_pred ---eEEEc--------cC--------------ccCCc---------------cccccccHHHHHHHHHhCcchHHhhhhh
Confidence 01211 11 33333 4999999999999987 678999
Q ss_pred cCCCCCCCCCCCC---C--CCCCCCcccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 008086 339 WGLRGPHDAPSYD---E--SPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGE 400 (578)
Q Consensus 339 WG~~gP~da~~Yn---~--~P~~t~FF~~~gg~~~s~YG~FFL~WYs~~Li~Hgd~iL~~A~~~F~~ 400 (578)
|++.. ++.+|. + +|. .|=.++--+-.++|-+|..+ +.++--+.....++..|.+
T Consensus 193 w~t~~--ws~t~~~~~~i~~p~--~~~e~~~~~~~ld~~~f~~e----~~~~~~~~~~~~~~~~~P~ 251 (673)
T COG1874 193 WGTSF--WSHTYKDFDEIMSPN--PFGELPLPGLYLDYRRFESE----QILEFVREEGEAIKAYFPN 251 (673)
T ss_pred hhhhh--cccccccHHhhcCCC--CccccCCccchhhHhhhhhh----hhHHHHHHHHHHHHHhCCC
Confidence 99976 666666 3 444 22222211233788888743 4666677777777888843
No 10
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.50 E-value=2.9e-07 Score=94.28 Aligned_cols=76 Identities=21% Similarity=0.329 Sum_probs=53.8
Q ss_pred cHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchH---HHHHHHHHHHcCCcEEEEEeee--cCCCC-CCCCCh
Q 008086 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSG---YLAVAEMVEKIGLKLHVSLCFH--ALKQP-KIPLPD 184 (578)
Q Consensus 111 ~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsg---Y~~l~~mv~~~GLKl~vvmsFH--~cg~~-~IpLP~ 184 (578)
.++.|+.-|++||++|++.|.+.|.|...|++ +|+|||++ ..+.+++|++.||+| ||.+= .|+.. .=-||.
T Consensus 22 p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~-~g~~df~g~~dl~~f~~~a~~~gl~v--ilrpGpyi~aE~~~gG~P~ 98 (319)
T PF01301_consen 22 PPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPE-EGQFDFTGNRDLDRFLDLAQENGLYV--ILRPGPYICAEWDNGGLPA 98 (319)
T ss_dssp -GGGHHHHHHHHHHTT-SEEEEE--HHHHSSB-TTB---SGGG-HHHHHHHHHHTT-EE--EEEEES---TTBGGGG--G
T ss_pred ChhHHHHHHHHHHhCCcceEEEeccccccCCC-CCcccccchhhHHHHHHHHHHcCcEE--Eecccceecccccchhhhh
Confidence 47899999999999999999999999999997 99999997 678999999999997 77762 22211 113999
Q ss_pred hhHhh
Q 008086 185 WVSQI 189 (578)
Q Consensus 185 WV~~~ 189 (578)
|+.+.
T Consensus 99 Wl~~~ 103 (319)
T PF01301_consen 99 WLLRK 103 (319)
T ss_dssp GGGGS
T ss_pred hhhcc
Confidence 99873
No 11
>PLN03059 beta-galactosidase; Provisional
Probab=97.87 E-value=5.3e-05 Score=87.04 Aligned_cols=106 Identities=16% Similarity=0.265 Sum_probs=79.9
Q ss_pred ccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHH---HHHHHHHcCCcEEEEEeeecCCCCC-CCCChh
Q 008086 110 NHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLA---VAEMVEKIGLKLHVSLCFHALKQPK-IPLPDW 185 (578)
Q Consensus 110 ~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~---l~~mv~~~GLKl~vvmsFH~cg~~~-IpLP~W 185 (578)
-.++.|+.-|+++|++|++.|++-|.|..-|++ ||+|||+|-+. .+++|++.||.+++=..=..|..-+ =-||.|
T Consensus 56 ~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~-~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~W 134 (840)
T PLN03059 56 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVW 134 (840)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecccccCCC-CCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchh
Confidence 368899999999999999999999999999997 99999998654 5678999999994433333443222 249999
Q ss_pred hHhhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhchhc
Q 008086 186 VSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFM 244 (578)
Q Consensus 186 V~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~ 244 (578)
+.+ .|+|-+ ||.-+.|.+.|+.|-++..+.+
T Consensus 135 L~~----~~~i~~------------------------Rs~d~~fl~~v~~~~~~l~~~l 165 (840)
T PLN03059 135 LKY----VPGIEF------------------------RTDNGPFKAAMQKFTEKIVDMM 165 (840)
T ss_pred hhc----CCCccc------------------------ccCCHHHHHHHHHHHHHHHHHH
Confidence 975 233322 3444778888888877776665
No 12
>TIGR03356 BGL beta-galactosidase.
Probab=97.62 E-value=0.00025 Score=75.59 Aligned_cols=104 Identities=17% Similarity=0.287 Sum_probs=84.3
Q ss_pred ccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCcccc---chHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCCh
Q 008086 108 TVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYN---WSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPD 184 (578)
Q Consensus 108 ~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Yd---WsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~ 184 (578)
...+-..++.+++.||++|++.+.+++=|..++++|++++| +..|+++++.++++||+..|.|. | -.+|.
T Consensus 49 a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~-H------fd~P~ 121 (427)
T TIGR03356 49 ACDHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY-H------WDLPQ 121 (427)
T ss_pred cccHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec-c------CCccH
Confidence 45566788899999999999999999999999999888898 79999999999999999966664 3 35999
Q ss_pred hhHhhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhchhcCC
Q 008086 185 WVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT 246 (578)
Q Consensus 185 WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~g~ 246 (578)
|+.+ +.|-.+ +.-++.|.+|++...++|++...-
T Consensus 122 ~l~~------------~gGw~~----------------~~~~~~f~~ya~~~~~~~~d~v~~ 155 (427)
T TIGR03356 122 ALED------------RGGWLN----------------RDTAEWFAEYAAVVAERLGDRVKH 155 (427)
T ss_pred HHHh------------cCCCCC----------------hHHHHHHHHHHHHHHHHhCCcCCE
Confidence 9865 123222 334578999999999888886543
No 13
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.37 E-value=0.00063 Score=64.84 Aligned_cols=63 Identities=22% Similarity=0.396 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCcceEEecceeeccc-cCCCc---cccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChh
Q 008086 114 AIAAGLKALKLLGVEGVELPVWWGVAE-KEAMG---KYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDW 185 (578)
Q Consensus 114 a~~~~L~~LK~~GV~GV~vdVWWGivE-~~~p~---~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~W 185 (578)
..++.++.||++|++-|++++.|...+ +..++ .--|..++++++.+++.||+| |+.+|.- |.|
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~v--ild~h~~-------~~w 88 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYV--ILDLHNA-------PGW 88 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EE--EEEEEES-------TTC
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeE--EEEeccC-------ccc
Confidence 678999999999999999999995444 44333 346788899999999999999 8899984 777
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.10 E-value=0.032 Score=55.19 Aligned_cols=47 Identities=28% Similarity=0.553 Sum_probs=38.0
Q ss_pred eeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhhHh
Q 008086 136 WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQ 188 (578)
Q Consensus 136 WGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~~ 188 (578)
|+.+|++ +|+|||+..+++++.+++.|++++.-..+..+ ..|.|+..
T Consensus 3 W~~~ep~-~G~~n~~~~D~~~~~a~~~gi~v~gH~l~W~~-----~~P~W~~~ 49 (254)
T smart00633 3 WDSTEPS-RGQFNFSGADAIVNFAKENGIKVRGHTLVWHS-----QTPDWVFN 49 (254)
T ss_pred cccccCC-CCccChHHHHHHHHHHHHCCCEEEEEEEeecc-----cCCHhhhc
Confidence 8999997 99999999999999999999998643223222 37899864
No 15
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.06 E-value=0.0026 Score=68.09 Aligned_cols=107 Identities=21% Similarity=0.356 Sum_probs=81.7
Q ss_pred ccccHHHHHHHHHHHHHcCcceEEecceeeccccCC-Ccccc---chHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCC
Q 008086 108 TVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEA-MGKYN---WSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLP 183 (578)
Q Consensus 108 ~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~-p~~Yd---WsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP 183 (578)
...+-..++.+++.||++|++...+.+=|..++|+| .|+.| +..|+++++.++++|++..|.|. |- .||
T Consensus 53 a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~-H~------~~P 125 (455)
T PF00232_consen 53 ACDHYHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLY-HF------DLP 125 (455)
T ss_dssp TTGHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEE-SS--------B
T ss_pred cccchhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeee-ec------ccc
Confidence 455667889999999999999999999999999998 88888 99999999999999999966654 33 599
Q ss_pred hhhHhhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhchhcCCceE
Q 008086 184 DWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTIT 249 (578)
Q Consensus 184 ~WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~g~~I~ 249 (578)
.|+.+.| |-. .|.-++.|.+|.+-..++|.+...--||
T Consensus 126 ~~l~~~g------------gw~----------------~~~~~~~F~~Ya~~~~~~~gd~V~~w~T 163 (455)
T PF00232_consen 126 LWLEDYG------------GWL----------------NRETVDWFARYAEFVFERFGDRVKYWIT 163 (455)
T ss_dssp HHHHHHT------------GGG----------------STHHHHHHHHHHHHHHHHHTTTBSEEEE
T ss_pred cceeecc------------ccc----------------CHHHHHHHHHHHHHHHHHhCCCcceEEe
Confidence 9997732 222 2455688999999999999998765344
No 16
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.65 E-value=0.0039 Score=70.31 Aligned_cols=75 Identities=24% Similarity=0.377 Sum_probs=56.9
Q ss_pred cHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHH---HHHHHcCCcEEEEEee--ecCCCC-CCCCCh
Q 008086 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVA---EMVEKIGLKLHVSLCF--HALKQP-KIPLPD 184 (578)
Q Consensus 111 ~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~---~mv~~~GLKl~vvmsF--H~cg~~-~IpLP~ 184 (578)
.++.|..-|+++|++|.+.|.+.|+|.+-|++ ||+|||||=..++ .+|++.||=+ +|-. --|..- .=-||.
T Consensus 47 ~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~-~g~y~FsG~~DlvkFikl~~~~GLyv--~LRiGPyIcaEw~~GG~P~ 123 (649)
T KOG0496|consen 47 TPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPS-PGKYDFSGRYDLVKFIKLIHKAGLYV--ILRIGPYICAEWNFGGLPW 123 (649)
T ss_pred ChhhhHHHHHHHHhcCCceeeeeeecccccCC-CCcccccchhHHHHHHHHHHHCCeEE--EecCCCeEEecccCCCcch
Confidence 56789999999999999999999999999997 9999999977765 5677788766 4433 122211 124886
Q ss_pred hhHh
Q 008086 185 WVSQ 188 (578)
Q Consensus 185 WV~~ 188 (578)
|+..
T Consensus 124 wL~~ 127 (649)
T KOG0496|consen 124 WLRN 127 (649)
T ss_pred hhhh
Confidence 6644
No 17
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.51 E-value=0.019 Score=62.63 Aligned_cols=108 Identities=12% Similarity=0.232 Sum_probs=85.8
Q ss_pred ccccHHHHHHHHHHHHHcCcceEEecceeeccccCC----CccccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCC
Q 008086 108 TVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEA----MGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLP 183 (578)
Q Consensus 108 ~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~----p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP 183 (578)
...+-...+.+++.||++|++...+.+=|..++|++ +++-.+..|+++++-++++|++..|.|.-| .||
T Consensus 66 A~D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~-------~~P 138 (474)
T PRK09852 66 AIDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHF-------DVP 138 (474)
T ss_pred cCchhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC-------CCC
Confidence 455666788999999999999999999999999975 477889999999999999999997777643 499
Q ss_pred hhhHhhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhchhcCCceE
Q 008086 184 DWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTIT 249 (578)
Q Consensus 184 ~WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~g~~I~ 249 (578)
.|+.+. . .|- ..|.-++.|.+|.+-..++|.+....=||
T Consensus 139 ~~l~~~---~--------GGW----------------~~~~~~~~F~~ya~~~~~~fgd~Vk~WiT 177 (474)
T PRK09852 139 MHLVTE---Y--------GSW----------------RNRKMVEFFSRYARTCFEAFDGLVKYWLT 177 (474)
T ss_pred HHHHHh---c--------CCC----------------CCHHHHHHHHHHHHHHHHHhcCcCCeEEe
Confidence 998551 0 111 12455788999999999999887765444
No 18
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.11 E-value=0.031 Score=61.02 Aligned_cols=107 Identities=13% Similarity=0.172 Sum_probs=82.6
Q ss_pred cccHHHHHHHHHHHHHcCcceEEecceeeccccCC----CccccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCCh
Q 008086 109 VNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEA----MGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPD 184 (578)
Q Consensus 109 ~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~----p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~ 184 (578)
..+-...+.+++.||++|++...+.+=|..++|.| +++-.+..|+++++.++++|++..|-|. | -.||.
T Consensus 65 ~D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~-H------~dlP~ 137 (477)
T PRK15014 65 VDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS-H------FEMPL 137 (477)
T ss_pred cCcccccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee-C------CCCCH
Confidence 34445677999999999999999999999999975 4666799999999999999999855553 2 25999
Q ss_pred hhHhhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhchhcCCceE
Q 008086 185 WVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTIT 249 (578)
Q Consensus 185 WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~g~~I~ 249 (578)
|+.+. + .|-. .|.-++.|.+|++-..++|.+....=||
T Consensus 138 ~L~~~---y--------GGW~----------------n~~~~~~F~~Ya~~~f~~fgdrVk~WiT 175 (477)
T PRK15014 138 HLVQQ---Y--------GSWT----------------NRKVVDFFVRFAEVVFERYKHKVKYWMT 175 (477)
T ss_pred HHHHh---c--------CCCC----------------ChHHHHHHHHHHHHHHHHhcCcCCEEEE
Confidence 99651 0 1222 2445688999999999999887765444
No 19
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.07 E-value=0.055 Score=58.89 Aligned_cols=108 Identities=15% Similarity=0.220 Sum_probs=83.6
Q ss_pred CCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCcccc---chHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCC
Q 008086 106 ANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYN---WSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPL 182 (578)
Q Consensus 106 ~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Yd---WsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpL 182 (578)
.....+-...+.+++.||++|++.-...+=|..++|+|+|++| ...|++|++-++++|++-.|-|- | ..|
T Consensus 46 ~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-H------~dl 118 (467)
T TIGR01233 46 EPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-H------FDT 118 (467)
T ss_pred CccCchhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-C------CCC
Confidence 3345566678899999999999999999999999999887774 67899999999999999755543 3 369
Q ss_pred ChhhHhhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhchhcCCceE
Q 008086 183 PDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTIT 249 (578)
Q Consensus 183 P~WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~g~~I~ 249 (578)
|.|+.+ +.|-. .|.-++.|.+|.+--.++|.+ ...=||
T Consensus 119 P~~L~~------------~GGW~----------------n~~~v~~F~~YA~~~f~~fgd-Vk~WiT 156 (467)
T TIGR01233 119 PEALHS------------NGDFL----------------NRENIEHFIDYAAFCFEEFPE-VNYWTT 156 (467)
T ss_pred cHHHHH------------cCCCC----------------CHHHHHHHHHHHHHHHHHhCC-CCEEEE
Confidence 999965 22322 355578888998888888886 543333
No 20
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=95.99 E-value=0.034 Score=60.34 Aligned_cols=106 Identities=16% Similarity=0.226 Sum_probs=83.8
Q ss_pred ccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccc---cchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCCh
Q 008086 108 TVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKY---NWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPD 184 (578)
Q Consensus 108 ~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Y---dWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~ 184 (578)
...+-...+.+++.||++|++.-...+=|..++|+|.|.. -+..|++|++-++++|++-.|-|- | -.||.
T Consensus 49 a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-H------~dlP~ 121 (469)
T PRK13511 49 ASDFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-H------FDTPE 121 (469)
T ss_pred ccchhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-C------CCCcH
Confidence 4555667789999999999999999999999999987655 477899999999999999855553 3 36999
Q ss_pred hhHhhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhchhcCCceE
Q 008086 185 WVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTIT 249 (578)
Q Consensus 185 WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~g~~I~ 249 (578)
|+.+ +.|-.+ |.-++.|.+|.+-..++|.+ ...=||
T Consensus 122 ~L~~------------~GGW~n----------------~~~v~~F~~YA~~~~~~fgd-Vk~W~T 157 (469)
T PRK13511 122 ALHS------------NGDWLN----------------RENIDHFVRYAEFCFEEFPE-VKYWTT 157 (469)
T ss_pred HHHH------------cCCCCC----------------HHHHHHHHHHHHHHHHHhCC-CCEEEE
Confidence 9965 223333 34568899999999999988 765444
No 21
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.74 E-value=0.051 Score=59.34 Aligned_cols=108 Identities=14% Similarity=0.176 Sum_probs=83.9
Q ss_pred ccccHHHHHHHHHHHHHcCcceEEecceeeccccCCC-cc---ccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCC
Q 008086 108 TVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAM-GK---YNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLP 183 (578)
Q Consensus 108 ~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p-~~---YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP 183 (578)
...+-...+.+++.||++|++.-...+=|..++|+|. ++ =-...|++|++-++++|++-.|-|. |- .||
T Consensus 62 a~D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-H~------dlP 134 (476)
T PRK09589 62 AIDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-HF------EMP 134 (476)
T ss_pred cccHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-CC------CCC
Confidence 4566677889999999999999999999999999863 33 3477899999999999999866553 43 599
Q ss_pred hhhHhhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhchhcCCceE
Q 008086 184 DWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTIT 249 (578)
Q Consensus 184 ~WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~g~~I~ 249 (578)
.|+.+. . .|-. .|.-++.|.+|.+--.++|.+....=||
T Consensus 135 ~~L~~~---y--------GGW~----------------n~~~i~~F~~YA~~~f~~fgdrVk~WiT 173 (476)
T PRK09589 135 YHLVTE---Y--------GGWR----------------NRKLIDFFVRFAEVVFTRYKDKVKYWMT 173 (476)
T ss_pred HHHHHh---c--------CCcC----------------ChHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 999551 0 2222 2455688999999999999988765444
No 22
>PLN02814 beta-glucosidase
Probab=95.59 E-value=0.055 Score=59.63 Aligned_cols=108 Identities=18% Similarity=0.234 Sum_probs=85.9
Q ss_pred ccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccc---hHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCCh
Q 008086 108 TVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNW---SGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPD 184 (578)
Q Consensus 108 ~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdW---sgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~ 184 (578)
...+-...+.+++.||++|++.-...+=|..++|+|+|+.|- ..|++|++-++++|++-.|-|. | -.||.
T Consensus 72 a~D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-H------~dlP~ 144 (504)
T PLN02814 72 ASDGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-H------YDLPQ 144 (504)
T ss_pred cccHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-C------CCCCH
Confidence 455666788999999999999999999999999998888776 6799999999999999855553 3 36999
Q ss_pred hhHhhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhchhcCCceE
Q 008086 185 WVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTIT 249 (578)
Q Consensus 185 WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~g~~I~ 249 (578)
|+.+. . .|- ..|.-++.|.+|.+--.++|.+....=||
T Consensus 145 ~L~~~---y--------GGW----------------~n~~~i~~F~~YA~~~f~~fgdrVk~WiT 182 (504)
T PLN02814 145 SLEDE---Y--------GGW----------------INRKIIEDFTAFADVCFREFGEDVKLWTT 182 (504)
T ss_pred HHHHh---c--------CCc----------------CChhHHHHHHHHHHHHHHHhCCcCCEEEe
Confidence 99651 0 122 23556788999999999999888765444
No 23
>PLN02849 beta-glucosidase
Probab=95.37 E-value=0.069 Score=58.88 Aligned_cols=108 Identities=16% Similarity=0.240 Sum_probs=85.6
Q ss_pred ccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCcccc---chHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCCh
Q 008086 108 TVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYN---WSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPD 184 (578)
Q Consensus 108 ~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Yd---WsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~ 184 (578)
...+-...+.+++.||++|++.-...+=|..++|+|.|+.| ...|+++++-++++|++-.|-|. |- .||.
T Consensus 74 a~D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-H~------dlP~ 146 (503)
T PLN02849 74 ACDGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-HY------DHPQ 146 (503)
T ss_pred cccHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-CC------CCcH
Confidence 45566778899999999999999999999999999877666 56799999999999999855553 33 5999
Q ss_pred hhHhhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhchhcCCceE
Q 008086 185 WVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTIT 249 (578)
Q Consensus 185 WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~g~~I~ 249 (578)
|+.+. . .|- ..|.-++.|.+|.+--.++|.+....=||
T Consensus 147 ~L~~~---y--------GGW----------------~nr~~v~~F~~YA~~~f~~fgDrVk~WiT 184 (503)
T PLN02849 147 YLEDD---Y--------GGW----------------INRRIIKDFTAYADVCFREFGNHVKFWTT 184 (503)
T ss_pred HHHHh---c--------CCc----------------CCchHHHHHHHHHHHHHHHhcCcCCEEEE
Confidence 99651 0 222 23556788999999999999988765344
No 24
>PLN02998 beta-glucosidase
Probab=95.12 E-value=0.092 Score=57.86 Aligned_cols=108 Identities=16% Similarity=0.264 Sum_probs=85.6
Q ss_pred ccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCcccc---chHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCCh
Q 008086 108 TVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYN---WSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPD 184 (578)
Q Consensus 108 ~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Yd---WsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~ 184 (578)
...+-...+.+++.||++|++.-...+=|..++|+|.|.+| ...|+++++-+++.|++-.|-|. | -.||.
T Consensus 77 a~D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-H------~dlP~ 149 (497)
T PLN02998 77 ACDQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-H------FDLPQ 149 (497)
T ss_pred cccHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-C------CCCCH
Confidence 45566678899999999999999999999999999888775 56799999999999999855553 3 36999
Q ss_pred hhHhhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhchhcCCceE
Q 008086 185 WVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTIT 249 (578)
Q Consensus 185 WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~g~~I~ 249 (578)
|+.+. . .|- -.|.-++.|.+|.+--.++|.+....=||
T Consensus 150 ~L~~~---y--------GGW----------------~n~~~v~~F~~YA~~~~~~fgdrVk~WiT 187 (497)
T PLN02998 150 ALEDE---Y--------GGW----------------LSQEIVRDFTAYADTCFKEFGDRVSHWTT 187 (497)
T ss_pred HHHHh---h--------CCc----------------CCchHHHHHHHHHHHHHHHhcCcCCEEEE
Confidence 99651 0 122 23556788999999999999987765444
No 25
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=95.09 E-value=0.26 Score=52.53 Aligned_cols=54 Identities=30% Similarity=0.489 Sum_probs=40.7
Q ss_pred eEEecce---eeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhhHh
Q 008086 129 GVELPVW---WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQ 188 (578)
Q Consensus 129 GV~vdVW---WGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~~ 188 (578)
.+-+++| |..+|++ +|+|||..=+++++.||++||++| +|-.= -.-..|.|+..
T Consensus 59 n~iTpenemKwe~i~p~-~G~f~Fe~AD~ia~FAr~h~m~lh----GHtLv-W~~q~P~W~~~ 115 (345)
T COG3693 59 NQITPENEMKWEAIEPE-RGRFNFEAADAIANFARKHNMPLH----GHTLV-WHSQVPDWLFG 115 (345)
T ss_pred cccccccccccccccCC-CCccCccchHHHHHHHHHcCCeec----cceee-ecccCCchhhc
Confidence 3456667 9999996 999999999999999999999763 33220 01148899854
No 26
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=94.55 E-value=0.21 Score=54.76 Aligned_cols=108 Identities=12% Similarity=0.232 Sum_probs=83.7
Q ss_pred ccccHHHHHHHHHHHHHcCcceEEecceeeccccCC-Ccc---ccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCC
Q 008086 108 TVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEA-MGK---YNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLP 183 (578)
Q Consensus 108 ~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~-p~~---YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP 183 (578)
...+-...+.+++.||++|++.-...+=|..++|+| +++ =-...|+++++-+++.|++-.|-|- |- .||
T Consensus 68 a~d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-H~------dlP 140 (478)
T PRK09593 68 AIDMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-HF------DCP 140 (478)
T ss_pred ccchHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-cc------CCC
Confidence 455667788999999999999999999999999986 333 3467899999999999999866553 43 599
Q ss_pred hhhHhhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhchhcCCceE
Q 008086 184 DWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTIT 249 (578)
Q Consensus 184 ~WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~g~~I~ 249 (578)
.|+.+. + .|-. .|.-++.|.+|.+--.++|.+....=||
T Consensus 141 ~~L~~~---~--------GGW~----------------n~~~v~~F~~YA~~~~~~fgdrVk~WiT 179 (478)
T PRK09593 141 MHLIEE---Y--------GGWR----------------NRKMVGFYERLCRTLFTRYKGLVKYWLT 179 (478)
T ss_pred HHHHhh---c--------CCCC----------------ChHHHHHHHHHHHHHHHHhcCcCCEEEe
Confidence 999651 0 1222 2445688999999989999888765444
No 27
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.47 E-value=0.64 Score=43.09 Aligned_cols=111 Identities=14% Similarity=0.040 Sum_probs=73.1
Q ss_pred HHHHHHHHcCcceEEecce--eec------cccCCCccccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhhHh
Q 008086 117 AGLKALKLLGVEGVELPVW--WGV------AEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQ 188 (578)
Q Consensus 117 ~~L~~LK~~GV~GV~vdVW--WGi------vE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~~ 188 (578)
+-+..||++||+.|++..= +|. +-+..|+- .-.-..++++.+++.|+++.+-++|+ .-.++.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~Dllge~v~a~h~~Girv~ay~~~~--------~d~~~~- 73 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRDLLGEQVEACHERGIRVPAYFDFS--------WDEDAA- 73 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcCHHHHHHHHHHHCCCEEEEEEeee--------cChHHH-
Confidence 4567899999999999442 332 11122322 35778899999999999999999993 334444
Q ss_pred hhccCCCeeeecCCCCc--cccccccccCcccccCCCChhHHHHHHHHHHHHhhchhcC
Q 008086 189 IGESQSSIFYTDQSGQQ--FKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMG 245 (578)
Q Consensus 189 ~g~~~pdI~ytD~~G~r--~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~g 245 (578)
+.+||=+..|++|+. ..+....+.-.+++- + -|+||+..-.++.-+.++
T Consensus 74 --~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~n---s---~Y~e~~~~~i~Ei~~~y~ 124 (132)
T PF14871_consen 74 --ERHPEWFVRDADGRPMRGERFGYPGWYTCCLN---S---PYREFLLEQIREILDRYD 124 (132)
T ss_pred --HhCCceeeECCCCCCcCCCCcCCCCceecCCC---c---cHHHHHHHHHHHHHHcCC
Confidence 499999999999982 222222221112221 2 388988887777766444
No 28
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=94.33 E-value=0.46 Score=49.13 Aligned_cols=219 Identities=19% Similarity=0.253 Sum_probs=122.8
Q ss_pred HHHHHHHcCcceEEec--ceeeccccCCCccccchHHHHHHHHHHHcCCcEE--EEEeeecCCCCCCCCChhhHhhhccC
Q 008086 118 GLKALKLLGVEGVELP--VWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLH--VSLCFHALKQPKIPLPDWVSQIGESQ 193 (578)
Q Consensus 118 ~L~~LK~~GV~GV~vd--VWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~--vvmsFH~cg~~~IpLP~WV~~~g~~~ 193 (578)
..+++-..-.+.|+.. -=|+.+|++ +|+|||+.-+++++.+++.|++++ +.+ .|. -.|+|+.+....+
T Consensus 26 ~~~~~~~~~Fn~~t~eN~~Kw~~~e~~-~g~~~~~~~D~~~~~a~~~g~~vrGH~Lv-W~~------~~P~w~~~~~~~~ 97 (320)
T PF00331_consen 26 RYRELFAKHFNSVTPENEMKWGSIEPE-PGRFNFESADAILDWARENGIKVRGHTLV-WHS------QTPDWVFNLANGS 97 (320)
T ss_dssp HHHHHHHHH-SEEEESSTTSHHHHESB-TTBEE-HHHHHHHHHHHHTT-EEEEEEEE-ESS------SS-HHHHTSTTSS
T ss_pred HHHHHHHHhCCeeeeccccchhhhcCC-CCccCccchhHHHHHHHhcCcceeeeeEE-Ecc------cccceeeeccCCC
Confidence 3444444556666654 339999997 999999999999999999999996 444 344 3799998731111
Q ss_pred CCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhchhcCC--ceEeecccccccccccccccccccc
Q 008086 194 SSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT--TITVRSFDFKQCQVHTISDLHLLWD 271 (578)
Q Consensus 194 pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~g~--~I~~~~~~~~~~~~~~~~~~~~~~~ 271 (578)
| .+ =+..++.|+.+.+.....+++ .|. .
T Consensus 98 ~-----------~~------------------~~~~~~~l~~~I~~v~~~y~~~g~i~---------------------~ 127 (320)
T PF00331_consen 98 P-----------DE------------------KEELRARLENHIKTVVTRYKDKGRIY---------------------A 127 (320)
T ss_dssp B-----------HH------------------HHHHHHHHHHHHHHHHHHTTTTTTES---------------------E
T ss_pred c-----------cc------------------HHHHHHHHHHHHHHHHhHhccccceE---------------------E
Confidence 0 00 145667777777776666663 344 1
Q ss_pred cccccccccccccceeecccCCCccCCCCcccCCCCCcCCCCcccccccHHHHHHHHHHHHHcCCCccCCCCCCCCCCCC
Q 008086 272 TDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYD 351 (578)
Q Consensus 272 ~~~~~~~~~~~~~eI~VGLGP~GELRYPSy~~~~~~w~~PGiGEFQCYDk~~~~~l~~~a~a~gn~~WG~~gP~da~~Yn 351 (578)
=|||. |+--.-|=.+.||- ..|. .-+| +.|....|+.+-++.-
T Consensus 128 WDVvN--------E~i~~~~~~~~~r~-------~~~~-~~lG-----~~yi~~aF~~A~~~~P---------------- 170 (320)
T PF00331_consen 128 WDVVN--------EAIDDDGNPGGLRD-------SPWY-DALG-----PDYIADAFRAAREADP---------------- 170 (320)
T ss_dssp EEEEE--------S-B-TTSSSSSBCT-------SHHH-HHHT-----TCHHHHHHHHHHHHHT----------------
T ss_pred EEEee--------ecccCCCccccccC-------Chhh-hccc-----HhHHHHHHHHHHHhCC----------------
Confidence 23443 22111110122222 0111 1223 7788888988877543
Q ss_pred CCCCCCCcccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeceeeecCCCCCChhhhcccccc
Q 008086 352 ESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYN 431 (578)
Q Consensus 352 ~~P~~t~FF~~~gg~~~s~YG~FFL~WYs~~Li~Hgd~iL~~A~~~F~~~~v~l~~KV~GIHWwY~t~SHaAELTAGyYN 431 (578)
+ ...|-|+ |..... .+.++++.+.+.+=. .+|+|-|===--|+.....
T Consensus 171 ---~-a~L~~ND---y~~~~~------------~k~~~~~~lv~~l~~-~gvpIdgIG~Q~H~~~~~~------------ 218 (320)
T PF00331_consen 171 ---N-AKLFYND---YNIESP------------AKRDAYLNLVKDLKA-RGVPIDGIGLQSHFDAGYP------------ 218 (320)
T ss_dssp ---T-SEEEEEE---SSTTST------------HHHHHHHHHHHHHHH-TTHCS-EEEEEEEEETTSS------------
T ss_pred ---C-cEEEecc---ccccch------------HHHHHHHHHHHHHHh-CCCccceechhhccCCCCC------------
Confidence 1 2333332 332222 445666666655442 2454333111124333222
Q ss_pred CCCCCChHHHHHHHHhCCceEEeeccccCCCCCCC
Q 008086 432 TAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPR 466 (578)
Q Consensus 432 t~~rdGY~~Ia~mfak~~~~l~ftc~Em~d~eqp~ 466 (578)
.+.+....+.|+..|+.+.+|=+|+.+...+.
T Consensus 219 ---~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~ 250 (320)
T PF00331_consen 219 ---PEQIWNALDRFASLGLPIHITELDVRDDDNPP 250 (320)
T ss_dssp ---HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTS
T ss_pred ---HHHHHHHHHHHHHcCCceEEEeeeecCCCCCc
Confidence 34577788889999999999999999887543
No 29
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=93.47 E-value=0.22 Score=54.08 Aligned_cols=102 Identities=23% Similarity=0.427 Sum_probs=63.3
Q ss_pred HHHHHHHHHHH-HcCcceEEecceeecc-------cc-CCCc--cccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCC
Q 008086 113 KAIAAGLKALK-LLGVEGVELPVWWGVA-------EK-EAMG--KYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIP 181 (578)
Q Consensus 113 ~a~~~~L~~LK-~~GV~GV~vdVWWGiv-------E~-~~p~--~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~Ip 181 (578)
..+..+|+.++ .+|++-|.+ ||+. .. .+.| .|||+..+++++.+.+.|||..+-|+|
T Consensus 39 ~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f--------- 106 (486)
T PF01229_consen 39 ADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGF--------- 106 (486)
T ss_dssp HHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-S---------
T ss_pred HHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEe---------
Confidence 46778888887 689999975 3333 11 2233 399999999999999999999999999
Q ss_pred CChhhHhhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhchhcCC
Q 008086 182 LPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT 246 (578)
Q Consensus 182 LP~WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~g~ 246 (578)
-|.++... ....|+ .++.++ | -.-.+.+++++++|..++.+.+|.
T Consensus 107 ~p~~~~~~---~~~~~~-------~~~~~~------p----p~~~~~W~~lv~~~~~h~~~RYG~ 151 (486)
T PF01229_consen 107 MPMALASG---YQTVFW-------YKGNIS------P----PKDYEKWRDLVRAFARHYIDRYGI 151 (486)
T ss_dssp B-GGGBSS-----EETT-------TTEE-S-----------BS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcCC---CCcccc-------ccCCcC------C----cccHHHHHHHHHHHHHHHHhhcCC
Confidence 67776431 111111 111111 1 123688999999999999998873
No 30
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=92.70 E-value=2 Score=47.77 Aligned_cols=118 Identities=15% Similarity=0.277 Sum_probs=90.0
Q ss_pred eeccee---eCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCc-ccc---chHHHHHHHHHHHcCCcEEEEE
Q 008086 98 LPLDTV---SDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMG-KYN---WSGYLAVAEMVEKIGLKLHVSL 170 (578)
Q Consensus 98 LPLd~V---~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~-~Yd---WsgY~~l~~mv~~~GLKl~vvm 170 (578)
+|-.++ ......++-...+.+++.+|++|++...+.+=|..+-|.+.+ ..| -.-|++|++-+.+.|++..|-|
T Consensus 41 ~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL 120 (460)
T COG2723 41 IPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTL 120 (460)
T ss_pred cCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 444443 244556666677899999999999999999999999997666 566 4569999999999999985555
Q ss_pred eeecCCCCCCCCChhhHhhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhchhcCCceE
Q 008086 171 CFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTIT 249 (578)
Q Consensus 171 sFH~cg~~~IpLP~WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~g~~I~ 249 (578)
+ | -.+|.|+.+.+ .|- ..|.-|+.|..|.+--..+|++...--+|
T Consensus 121 ~-H------fd~P~~L~~~y-----------gGW----------------~nR~~i~~F~~ya~~vf~~f~dkVk~W~T 165 (460)
T COG2723 121 Y-H------FDLPLWLQKPY-----------GGW----------------ENRETVDAFARYAATVFERFGDKVKYWFT 165 (460)
T ss_pred c-c------cCCcHHHhhcc-----------CCc----------------cCHHHHHHHHHHHHHHHHHhcCcceEEEE
Confidence 3 3 37999998732 122 23666888999999888888888765455
No 31
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=92.44 E-value=1.7 Score=45.14 Aligned_cols=122 Identities=18% Similarity=0.146 Sum_probs=78.1
Q ss_pred cccHHHHHHHHHHHHHcCcceEEeccee-ec------cccCC------Ccc-ccchHHHHHHHHHHHcCCcEEEEEeeec
Q 008086 109 VNHAKAIAAGLKALKLLGVEGVELPVWW-GV------AEKEA------MGK-YNWSGYLAVAEMVEKIGLKLHVSLCFHA 174 (578)
Q Consensus 109 ~~~~~a~~~~L~~LK~~GV~GV~vdVWW-Gi------vE~~~------p~~-YdWsgY~~l~~mv~~~GLKl~vvmsFH~ 174 (578)
+..++++++-|+.||++|+..|-+.||+ |. +++.+ +++ -.|.-...+++.+++.||+||+-|-+-.
T Consensus 15 ~~~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~ 94 (311)
T PF02638_consen 15 WPSKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGF 94 (311)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeec
Confidence 3478899999999999999999999995 32 22211 111 1377788999999999999999885422
Q ss_pred CCC--CCC--CCChhhHhhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhchhcC
Q 008086 175 LKQ--PKI--PLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMG 245 (578)
Q Consensus 175 cg~--~~I--pLP~WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~g 245 (578)
-.. ..+ .-|.|+.. .+|+...+...+....-+|. | ..+.=++|+.+...+....++
T Consensus 95 ~~~~~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~ln------P------~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 95 NAPDVSHILKKHPEWFAV---NHPGWVRTYEDANGGYYWLN------P------GHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred CCCchhhhhhcCchhhee---cCCCceeecccCCCCceEEC------C------CCHHHHHHHHHHHHHHHhcCC
Confidence 111 011 23566542 34444444433322222343 2 236678999998888877665
No 32
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=89.72 E-value=2.3 Score=42.87 Aligned_cols=119 Identities=18% Similarity=0.279 Sum_probs=72.2
Q ss_pred HHHHHHHHHHcCcceEEecceeeccccCCCccc---cchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhhHhhhc
Q 008086 115 IAAGLKALKLLGVEGVELPVWWGVAEKEAMGKY---NWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGE 191 (578)
Q Consensus 115 ~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Y---dWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~~~g~ 191 (578)
+...++++.++|+++|.++.-|+--.--+|..| -+-+++++++-+++.|.++ .+|-||..+ ++-+++.+.+
T Consensus 170 ~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~----~lH~cG~~~-~~~~~l~~~~- 243 (330)
T cd03465 170 IIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPV----IHHNCGDTA-PILELMADLG- 243 (330)
T ss_pred HHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCce----EEEECCCch-hHHHHHHHhC-
Confidence 445667778889999999998874331134444 4999999999999988765 569997543 5555666633
Q ss_pred cCCCeeeecCCCC-----c---cccccccccCcccccCCCChhHHHHHHHHHHHHhhch
Q 008086 192 SQSSIFYTDQSGQ-----Q---FKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKP 242 (578)
Q Consensus 192 ~~pdI~ytD~~G~-----r---~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~ 242 (578)
.|++-.|..-. + .+-||.-++|..-++..-|| +.=++.++..-+.+.+
T Consensus 244 --~d~~~~d~~~dl~~~~~~~g~~~~i~G~id~~~~l~~gt~-eei~~~v~~~l~~~~~ 299 (330)
T cd03465 244 --ADVFSIDVTVDLAEAKKKVGDKACLMGNLDPIDVLLNGSP-EEIKEEVKELLEKLLK 299 (330)
T ss_pred --CCeEeecccCCHHHHHHHhCCceEEEeCcChHHhhcCCCH-HHHHHHHHHHHHHHhC
Confidence 56666664411 0 12366666666523333354 3233334444444433
No 33
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=89.11 E-value=0.72 Score=48.90 Aligned_cols=55 Identities=29% Similarity=0.390 Sum_probs=42.4
Q ss_pred HHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeecCC
Q 008086 117 AGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALK 176 (578)
Q Consensus 117 ~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg 176 (578)
.-|+-||..|+.-|++-|| |.|...|..|...=.++++-++++|||+ .|.||-.+
T Consensus 28 d~~~ilk~~G~N~vRlRvw---v~P~~~g~~~~~~~~~~akrak~~Gm~v--lldfHYSD 82 (332)
T PF07745_consen 28 DLFQILKDHGVNAVRLRVW---VNPYDGGYNDLEDVIALAKRAKAAGMKV--LLDFHYSD 82 (332)
T ss_dssp -HHHHHHHTT--EEEEEE----SS-TTTTTTSHHHHHHHHHHHHHTT-EE--EEEE-SSS
T ss_pred CHHHHHHhcCCCeEEEEec---cCCcccccCCHHHHHHHHHHHHHCCCeE--EEeecccC
Confidence 5788999999999999997 5555468899999999999999999999 89999764
No 34
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=85.49 E-value=2.6 Score=40.34 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHHHHcCcceEEecceeeccccCC--Cccc-cc-------hHHHHHHHHHHHcCCcEEEEEee
Q 008086 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEA--MGKY-NW-------SGYLAVAEMVEKIGLKLHVSLCF 172 (578)
Q Consensus 111 ~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~--p~~Y-dW-------sgY~~l~~mv~~~GLKl~vvmsF 172 (578)
.++.|++.+++||++|++.|-+- |.-.+... |-++ ++ +....+++.+++.|+||.+=|-+
T Consensus 18 ~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~ 87 (166)
T PF14488_consen 18 TPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF 87 (166)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC
Confidence 57899999999999999999776 54444432 2222 11 36789999999999999554444
No 35
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=84.06 E-value=5.4 Score=39.26 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=34.3
Q ss_pred HHHHH-HHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeecC
Q 008086 118 GLKAL-KLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL 175 (578)
Q Consensus 118 ~L~~L-K~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~c 175 (578)
-|+.+ ...|+|.|.++.++.. ....++.+.+++.|-|+ |+|+|.-
T Consensus 83 ll~~~~~~~~~d~vDiEl~~~~-----------~~~~~l~~~~~~~~~kv--I~S~H~f 128 (228)
T TIGR01093 83 ELKRAADSPGPDFVDIELFLPD-----------DAVKELINIAKKGGTKI--IMSYHDF 128 (228)
T ss_pred HHHHHHHhCCCCEEEEEccCCH-----------HHHHHHHHHHHHCCCEE--EEeccCC
Confidence 45555 6789999999987742 23567788888889887 9999975
No 36
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=83.57 E-value=4 Score=42.08 Aligned_cols=68 Identities=13% Similarity=0.187 Sum_probs=51.2
Q ss_pred CceEEEeeecc---eeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEE
Q 008086 91 AVRLFVGLPLD---TVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLH 167 (578)
Q Consensus 91 ~vpvyVmLPLd---~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~ 167 (578)
.+||+||+--- -+-+.. .-+.+.++++.+|++|++||.+.+- ..+|+.|...-++|++.+. |+++
T Consensus 51 ~ipv~vMIRPR~gdF~Ys~~---E~~~M~~di~~~~~~GadGvV~G~L------~~dg~vD~~~~~~Li~~a~--~~~v- 118 (248)
T PRK11572 51 TIPVHPIIRPRGGDFCYSDG---EFAAMLEDIATVRELGFPGLVTGVL------DVDGHVDMPRMRKIMAAAG--PLAV- 118 (248)
T ss_pred CCCeEEEEecCCCCCCCCHH---HHHHHHHHHHHHHHcCCCEEEEeeE------CCCCCcCHHHHHHHHHHhc--CCce-
Confidence 69999998432 111222 2357889999999999999998653 3478999999999999984 6776
Q ss_pred EEEeee
Q 008086 168 VSLCFH 173 (578)
Q Consensus 168 vvmsFH 173 (578)
.||
T Consensus 119 ---TFH 121 (248)
T PRK11572 119 ---TFH 121 (248)
T ss_pred ---EEe
Confidence 566
No 37
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=82.67 E-value=3.3 Score=42.48 Aligned_cols=80 Identities=14% Similarity=0.081 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCcceEEecceeeccccCCCc---cccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhhHhhhc
Q 008086 115 IAAGLKALKLLGVEGVELPVWWGVAEKEAMG---KYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGE 191 (578)
Q Consensus 115 ~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~---~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~~~g~ 191 (578)
+...++++.++|+++|.+..-|+-..--+|. +|-+.+++++++-+++.|... + .|-||...--+|.. .+
T Consensus 182 ~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~--i--lH~CG~~~~~~~~l-~~--- 253 (340)
T TIGR01463 182 VIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGIT--V--LHICGFTQPILRDI-AN--- 253 (340)
T ss_pred HHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCce--E--EEECCCchhhHHHH-HH---
Confidence 3455677889999999888778632222344 455999999999999887432 3 68898654334443 23
Q ss_pred cCCCeeeecCC
Q 008086 192 SQSSIFYTDQS 202 (578)
Q Consensus 192 ~~pdI~ytD~~ 202 (578)
...|++-.|..
T Consensus 254 ~g~d~ls~d~~ 264 (340)
T TIGR01463 254 NGCFGFSVDMK 264 (340)
T ss_pred hCCCEEeecCC
Confidence 33455544443
No 38
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=82.23 E-value=3.3 Score=43.08 Aligned_cols=108 Identities=17% Similarity=0.219 Sum_probs=67.4
Q ss_pred CCceEEEeeecceeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEE
Q 008086 90 DAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVS 169 (578)
Q Consensus 90 ~~vpvyVmLPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vv 169 (578)
.+|.|.+-.--.+ .+|..+-.+++++-|+.+++.||.||.+|-+ .+.+|+-=..|.++++.+.+++| .
T Consensus 85 KgVgi~lw~~~~~--~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~------~~d~Q~~v~~y~~i~~~AA~~~L----m 152 (273)
T PF10566_consen 85 KGVGIWLWYHSET--GGNVANLEKQLDEAFKLYAKWGVKGVKIDFM------DRDDQEMVNWYEDILEDAAEYKL----M 152 (273)
T ss_dssp TT-EEEEEEECCH--TTBHHHHHCCHHHHHHHHHHCTEEEEEEE--------SSTSHHHHHHHHHHHHHHHHTT-----E
T ss_pred cCCCEEEEEeCCc--chhhHhHHHHHHHHHHHHHHcCCCEEeeCcC------CCCCHHHHHHHHHHHHHHHHcCc----E
Confidence 4677666543222 2233333344689999999999999999976 34789999999999999999988 5
Q ss_pred EeeecCCCCCCCCChhhHhhhccCCCeeeecCCCCccccccccc--cCcccc
Q 008086 170 LCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLA--VDDLPV 219 (578)
Q Consensus 170 msFH~cg~~~IpLP~WV~~~g~~~pdI~ytD~~G~r~~E~LSl~--vD~~pv 219 (578)
+-||.| ..|.=+. ...|.++ .+.|.|-.|+-.+. .+.-|.
T Consensus 153 vnfHg~-----~kPtG~~---RTyPN~m--T~EgVrG~E~~~~~~~~~~~p~ 194 (273)
T PF10566_consen 153 VNFHGA-----TKPTGLR---RTYPNLM--TREGVRGQEYNKWSGDGGNPPE 194 (273)
T ss_dssp EEETTS--------TTHH---HCSTTEE--EE--S--GGGGGTT-TTS-HCC
T ss_pred EEecCC-----cCCCccc---ccCccHH--HHHHhhhhhhcccccCCCCCCc
Confidence 589997 3443222 3778764 57888888985444 344443
No 39
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=81.11 E-value=22 Score=34.76 Aligned_cols=55 Identities=15% Similarity=0.047 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhh
Q 008086 116 AAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWV 186 (578)
Q Consensus 116 ~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV 186 (578)
.+-|+.+-.+|++.|.++..+ +-..++++.+++.|-|+ |+|+|.-.+.. +.+.|.
T Consensus 79 ~~ll~~~~~~~~d~vDiEl~~-------------~~~~~~~~~~~~~~~ki--I~S~H~f~~tp-~~~~l~ 133 (225)
T cd00502 79 LELLEEALKLGPDYVDIELDS-------------ALLEELINSRKKGNTKI--IGSYHDFSGTP-SDEELV 133 (225)
T ss_pred HHHHHHHHHHCCCEEEEEecc-------------hHHHHHHHHHHhCCCEE--EEEeccCCCCc-CHHHHH
Confidence 334666667789999988654 23567777777788888 99999765321 444444
No 40
>PRK01060 endonuclease IV; Provisional
Probab=81.02 E-value=3.8 Score=40.32 Aligned_cols=63 Identities=10% Similarity=-0.037 Sum_probs=40.7
Q ss_pred eeecceeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcE
Q 008086 97 GLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (578)
Q Consensus 97 mLPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl 166 (578)
|+++++.++- .. .++..|+.++++|.++|++.+....- ..+..++=...+++-+++++.||++
T Consensus 1 ~~~~g~~~~~--~~---~~~~~l~~~~~~G~d~vEl~~~~p~~--~~~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 1 MKLIGAHVSA--AG---GLEGAVAEAAEIGANAFMIFTGNPQQ--WKRKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CCeEEEeeec--CC---CHHHHHHHHHHcCCCEEEEECCCCCC--CcCCCCCHHHHHHHHHHHHHcCCCC
Confidence 5677776521 11 16789999999999999996531100 0011223334667888999999996
No 41
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=80.23 E-value=2.2 Score=38.72 Aligned_cols=47 Identities=28% Similarity=0.233 Sum_probs=36.5
Q ss_pred HHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEE
Q 008086 119 LKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSL 170 (578)
Q Consensus 119 L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvm 170 (578)
|+.++++|+++|++..++..-.... =...+++.++++++||++..+-
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-----~~~~~~~~~~~~~~gl~i~~~~ 47 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-----DDEAEELRRLLEDYGLKIASLH 47 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-----HHHHHHHHHHHHHTTCEEEEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-----hHHHHHHHHHHHHcCCeEEEEe
Confidence 6889999999999998866444321 3467799999999999975443
No 42
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=79.36 E-value=3.4 Score=41.22 Aligned_cols=118 Identities=17% Similarity=0.051 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHcCcceEEecceeeccc-----cCCCccccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhhH
Q 008086 113 KAIAAGLKALKLLGVEGVELPVWWGVAE-----KEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVS 187 (578)
Q Consensus 113 ~a~~~~L~~LK~~GV~GV~vdVWWGivE-----~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~ 187 (578)
+.+...++++.++|+++|.++.=|+-.. ++.-.+|-|..|+++++.+++.|.++ + .|-||+. -++=.++.
T Consensus 144 ~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~--~--lH~cg~~-~~~~~~l~ 218 (306)
T cd00465 144 EFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPI--V--HHSCYDA-ADLLEEMI 218 (306)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCce--E--EEECCCH-HHHHHHHH
Confidence 3455667788999999999987666433 22234555899999999888877665 3 4889863 22222333
Q ss_pred hhhccCCCeeeecCCC-C--------ccccccccccCcccccCCCChhHHHHHHHHHHHHhhc
Q 008086 188 QIGESQSSIFYTDQSG-Q--------QFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFK 241 (578)
Q Consensus 188 ~~g~~~pdI~ytD~~G-~--------r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~ 241 (578)
+ ...|++--|..- . ..+=+|..++|.. .+ ..|+ +.=.+.++...+.+.
T Consensus 219 ~---~~~d~~~~d~~~~d~~~~~~~~~~~~~i~Ggv~~~-~~-~~~~-e~i~~~v~~~l~~~~ 275 (306)
T cd00465 219 Q---LGVDVISFDMTVNEPKEAIEKVGEKKTLVGGVDPG-YL-PATD-EECIAKVEELVERLG 275 (306)
T ss_pred H---hCcceEecccccCCHHHHHHHhCCCEEEECCCCcc-cc-CCCH-HHHHHHHHHHHHHhC
Confidence 3 334444333321 0 0123788888876 33 4566 545555555555554
No 43
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=78.90 E-value=3.7 Score=40.95 Aligned_cols=71 Identities=17% Similarity=0.274 Sum_probs=46.7
Q ss_pred CCCceEEEeeec---ceeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCc
Q 008086 89 LDAVRLFVGLPL---DTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLK 165 (578)
Q Consensus 89 ~~~vpvyVmLPL---d~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLK 165 (578)
...+|++||+-- |-+-+.. .-+.+..+++.+|++|++||.+.+ .- .+|..|-..-+++.+.++ |+.
T Consensus 48 ~~~ipv~vMIRpr~gdF~Ys~~---E~~~M~~dI~~~~~~GadG~VfG~----L~--~dg~iD~~~~~~Li~~a~--~~~ 116 (201)
T PF03932_consen 48 AVDIPVHVMIRPRGGDFVYSDE---EIEIMKEDIRMLRELGADGFVFGA----LT--EDGEIDEEALEELIEAAG--GMP 116 (201)
T ss_dssp HTTSEEEEE--SSSS-S---HH---HHHHHHHHHHHHHHTT-SEEEE------BE--TTSSB-HHHHHHHHHHHT--TSE
T ss_pred hcCCceEEEECCCCCCccCCHH---HHHHHHHHHHHHHHcCCCeeEEEe----EC--CCCCcCHHHHHHHHHhcC--CCe
Confidence 458999999843 2222222 235788999999999999999864 33 378899999999999987 666
Q ss_pred EEEEEeeec
Q 008086 166 LHVSLCFHA 174 (578)
Q Consensus 166 l~vvmsFH~ 174 (578)
+ .||.
T Consensus 117 ~----tFHR 121 (201)
T PF03932_consen 117 V----TFHR 121 (201)
T ss_dssp E----EE-G
T ss_pred E----EEeC
Confidence 6 6674
No 44
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=78.70 E-value=5.4 Score=38.18 Aligned_cols=61 Identities=23% Similarity=0.342 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHcCcceEEecceeeccccC-CCccc-------------cchHHHHHHHHHHHcCCcEEEEEee-ecCC
Q 008086 113 KAIAAGLKALKLLGVEGVELPVWWGVAEKE-AMGKY-------------NWSGYLAVAEMVEKIGLKLHVSLCF-HALK 176 (578)
Q Consensus 113 ~a~~~~L~~LK~~GV~GV~vdVWWGivE~~-~p~~Y-------------dWsgY~~l~~mv~~~GLKl~vvmsF-H~cg 176 (578)
+.|.+.|..||.+||++|.+.- +.|.. +..-| .+..+++|++.+++.|+||..=+-+ |.+.
T Consensus 4 ~gi~~kLdyl~~lGv~~I~l~P---i~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~ 79 (316)
T PF00128_consen 4 RGIIDKLDYLKDLGVNAIWLSP---IFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSD 79 (316)
T ss_dssp HHHHHTHHHHHHHTESEEEESS----EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEET
T ss_pred HHHHHhhHHHHHcCCCceeccc---ccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeecccccc
Confidence 4678899999999999999862 22221 11112 3567899999999999999655554 6543
No 45
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=77.69 E-value=6 Score=42.67 Aligned_cols=55 Identities=16% Similarity=0.301 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeec
Q 008086 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHA 174 (578)
Q Consensus 111 ~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~ 174 (578)
..+.++++++..|++|+||.-|++. ....+.+.....+++.+++.|+|| .+||--
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig-------~~d~~~~~~l~~a~~AA~~~gFKl--f~SfD~ 69 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG-------SSDSWQPDQLADAYQAAEAVGFKL--FFSFDM 69 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc-------cCCcccHHHHHHHHHHHHhcCCEE--EEEecc
Confidence 5678999999999999999999986 245677899999999999999999 777743
No 46
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=77.23 E-value=7.6 Score=38.06 Aligned_cols=53 Identities=15% Similarity=0.321 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHcCcceEEecceeeccccCCCccc--cc--hHHHHHHHHHHHcCCcEEEEEeee
Q 008086 114 AIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKY--NW--SGYLAVAEMVEKIGLKLHVSLCFH 173 (578)
Q Consensus 114 a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Y--dW--sgY~~l~~mv~~~GLKl~vvmsFH 173 (578)
-++..|+.++++|+++|++ |+-. +..| ++ ..-+++.+.++++||++..+...|
T Consensus 14 ~l~~~l~~~~~~G~~~vEl---~~~~----~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~ 70 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEI---WGGR----PHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPET 70 (275)
T ss_pred CHHHHHHHHHHcCCCEEEE---ccCC----ccccccccCchHHHHHHHHHHHcCCeEEEecCcc
Confidence 4789999999999999998 3210 1111 11 245778899999999985433333
No 47
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=75.49 E-value=6.1 Score=38.95 Aligned_cols=67 Identities=21% Similarity=0.370 Sum_probs=44.8
Q ss_pred eecceeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchH--HHHHHHHHHHcCCcEEEE
Q 008086 98 LPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSG--YLAVAEMVEKIGLKLHVS 169 (578)
Q Consensus 98 LPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsg--Y~~l~~mv~~~GLKl~vv 169 (578)
+||.+.. ..++....++..++.++++|.++|++.+. . . ......++|+. .+++.++++++||++..+
T Consensus 8 ~~~~~~~--~~~~~~~~~~e~~~~~~~~G~~~iEl~~~-~-~-~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~ 76 (283)
T PRK13209 8 IPLGIYE--KALPAGECWLEKLAIAKTAGFDFVEMSVD-E-S-DERLARLDWSREQRLALVNALVETGFRVNSM 76 (283)
T ss_pred ccceeec--ccCCCCCCHHHHHHHHHHcCCCeEEEecC-c-c-ccchhccCCCHHHHHHHHHHHHHcCCceeEE
Confidence 4555554 22333446778999999999999999643 0 0 00123355654 567899999999999654
No 48
>smart00642 Aamy Alpha-amylase domain.
Probab=75.24 E-value=12 Score=35.49 Aligned_cols=66 Identities=17% Similarity=0.256 Sum_probs=44.6
Q ss_pred cccHHHHHHHHHHHHHcCcceEEecceeecccc-CCCccc-------------cchHHHHHHHHHHHcCCcEEEEEeeec
Q 008086 109 VNHAKAIAAGLKALKLLGVEGVELPVWWGVAEK-EAMGKY-------------NWSGYLAVAEMVEKIGLKLHVSLCFHA 174 (578)
Q Consensus 109 ~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~-~~p~~Y-------------dWsgY~~l~~mv~~~GLKl~vvmsFH~ 174 (578)
.-+-+.|.+.|..||++||++|.+.--+-..+. .....| +...++++++.+++.|++|.+=+-+--
T Consensus 15 ~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 15 GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 344568889999999999999987654322210 001111 356789999999999999955555533
No 49
>PHA00442 host recBCD nuclease inhibitor
Probab=74.64 E-value=3.1 Score=34.57 Aligned_cols=26 Identities=50% Similarity=0.887 Sum_probs=21.9
Q ss_pred HHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHH
Q 008086 117 AGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEK 161 (578)
Q Consensus 117 ~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~ 161 (578)
.-|++|++.||| ||+||.+..+|+..
T Consensus 30 ~~L~~Lea~GVD-------------------NW~Gy~eA~emv~~ 55 (59)
T PHA00442 30 EFLKALRACGVD-------------------NWDGYMDAVEMVAE 55 (59)
T ss_pred HHHHHHHHcCCc-------------------chhhHHHHHHHHhh
Confidence 457888888886 89999999999864
No 50
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=72.32 E-value=6.2 Score=41.86 Aligned_cols=84 Identities=17% Similarity=0.171 Sum_probs=53.6
Q ss_pred ceEEEeeecceeeC-----CCc----cccHHHHH-----------HHHHHHHHcCcce-EEecce--e-eccccCCCccc
Q 008086 92 VRLFVGLPLDTVSD-----ANT----VNHAKAIA-----------AGLKALKLLGVEG-VELPVW--W-GVAEKEAMGKY 147 (578)
Q Consensus 92 vpvyVmLPLd~V~~-----~n~----~~~~~a~~-----------~~L~~LK~~GV~G-V~vdVW--W-GivE~~~p~~Y 147 (578)
+-..+..|++++.+ .+. +++++.+. .-+++..++|++| |.+..+ | +++.++-=.+|
T Consensus 173 i~~~~~gPf~~la~~l~g~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~lsp~~f~ef 252 (378)
T cd03308 173 AGGVSEAPFDIIGDYLRGFKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPFLRPKQFEKF 252 (378)
T ss_pred cceeEeCChHHHHHHHhCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCccCHHHHHHH
Confidence 34457889996542 111 23343333 3455667789997 666664 3 45554433444
Q ss_pred cchHHHHHHHHHHHcCCcEEEEEeeecCCCCC
Q 008086 148 NWSGYLAVAEMVEKIGLKLHVSLCFHALKQPK 179 (578)
Q Consensus 148 dWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~ 179 (578)
-|-+++++++-+++.|.++ ++ |.||..+
T Consensus 253 ~~P~~k~i~~~i~~~g~~~--il--h~cG~~~ 280 (378)
T cd03308 253 YWPSFKKVVEGLAARGQRI--FL--FFEGDWE 280 (378)
T ss_pred HHHHHHHHHHHHHhcCCCE--EE--EcCCCcH
Confidence 4999999999999988665 44 9998643
No 51
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=71.41 E-value=7.7 Score=43.36 Aligned_cols=65 Identities=23% Similarity=0.382 Sum_probs=46.0
Q ss_pred eCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccch-----------------HHHHHHHHHHHcCCcE
Q 008086 104 SDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWS-----------------GYLAVAEMVEKIGLKL 166 (578)
Q Consensus 104 ~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWs-----------------gY~~l~~mv~~~GLKl 166 (578)
+..+++ +++...|..||++||++|.+-= +.| .++.++|- .++++++.+++.||+|
T Consensus 105 ~~~G~~---~gi~~~l~yl~~LGv~~i~L~P---i~~--~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~V 176 (542)
T TIGR02402 105 TPEGTF---DAAIEKLPYLADLGITAIELMP---VAQ--FPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGV 176 (542)
T ss_pred CCCCCH---HHHHHhhHHHHHcCCCEEEeCc---ccc--CCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEE
Confidence 344555 4778899999999999998742 122 24455663 4899999999999999
Q ss_pred EEEEeeecCC
Q 008086 167 HVSLCFHALK 176 (578)
Q Consensus 167 ~vvmsFH~cg 176 (578)
..=+-+--++
T Consensus 177 ilD~V~NH~~ 186 (542)
T TIGR02402 177 ILDVVYNHFG 186 (542)
T ss_pred EEEEccCCCC
Confidence 6655563343
No 52
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=71.38 E-value=20 Score=40.78 Aligned_cols=69 Identities=25% Similarity=0.397 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcCcceEEecceeeccccCCC--ccccchH---HHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhhH
Q 008086 113 KAIAAGLKALKLLGVEGVELPVWWGVAEKEAM--GKYNWSG---YLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVS 187 (578)
Q Consensus 113 ~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p--~~YdWsg---Y~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~ 187 (578)
-..+.+++.||++||+.-...+=|..+=|.|. +..|..| |..|++-+.+.|++-.|-| ||-. ||+|+.
T Consensus 91 h~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL-fHwD------lPq~Le 163 (524)
T KOG0626|consen 91 HRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL-FHWD------LPQALE 163 (524)
T ss_pred hhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE-ecCC------CCHHHH
Confidence 35678999999999999999999999999887 5577764 9999999999999997776 5764 999996
Q ss_pred h
Q 008086 188 Q 188 (578)
Q Consensus 188 ~ 188 (578)
+
T Consensus 164 D 164 (524)
T KOG0626|consen 164 D 164 (524)
T ss_pred H
Confidence 5
No 53
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=70.91 E-value=29 Score=35.07 Aligned_cols=107 Identities=15% Similarity=0.220 Sum_probs=61.4
Q ss_pred CceEEEeeecceeeCCCccc-cHHHHHHHHHHHHHcC-cceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEE
Q 008086 91 AVRLFVGLPLDTVSDANTVN-HAKAIAAGLKALKLLG-VEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHV 168 (578)
Q Consensus 91 ~vpvyVmLPLd~V~~~n~~~-~~~a~~~~L~~LK~~G-V~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~v 168 (578)
.+|+-+++= +...++.+. ..+...+-|+.+-.+| +|.|.++..++. ....++.+.+++.|.|+
T Consensus 74 ~~PiI~T~R--~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~-----------~~~~~l~~~~~~~~~kv-- 138 (253)
T PRK02412 74 GKPLLFTFR--TAKEGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSGK-----------DVVKEMVAFAHEHGVKV-- 138 (253)
T ss_pred CCcEEEEEC--ChhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCCh-----------HHHHHHHHHHHHcCCEE--
Confidence 356655442 233344433 2333334567777778 999999875531 23568888889999987
Q ss_pred EEeeecCCCCCCCCChhhHhhhccCCCeeeecCCCCccccccccccCcccc-cCCCChhHHHH
Q 008086 169 SLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPV-LDGKTPIQVYQ 230 (578)
Q Consensus 169 vmsFH~cg~~~IpLP~WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pv-l~GRTpiq~Y~ 230 (578)
|+|+|.-. -+++.|-.. ....++.++|+|-+-+ .--+++.++.+
T Consensus 139 I~S~H~f~---~tP~~~~l~---------------~~~~~~~~~gaDivKia~~a~~~~D~~~ 183 (253)
T PRK02412 139 VLSYHDFE---KTPPKEEIV---------------ERLRKMESLGADIVKIAVMPQSEQDVLT 183 (253)
T ss_pred EEeeCCCC---CCcCHHHHH---------------HHHHHHHHhCCCEEEEEecCCCHHHHHH
Confidence 99999642 233444221 0123556777776655 33445444443
No 54
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=70.28 E-value=9.5 Score=37.83 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHcCcceEEecceeeccccCCCccccc--hHHHHHHHHHHHcCCcEEEE
Q 008086 112 AKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNW--SGYLAVAEMVEKIGLKLHVS 169 (578)
Q Consensus 112 ~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdW--sgY~~l~~mv~~~GLKl~vv 169 (578)
.-.|+..|+.++++|.++|++.++-. - ..+..++| ..-.++.++++++||+|..+
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~~~~-~--~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~ 71 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSVDET-D--DRLSRLDWSREQRLALVNAIIETGVRIPSM 71 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecCCc-c--chhhccCCCHHHHHHHHHHHHHcCCCceee
Confidence 34678999999999999999965431 1 11333444 44667888999999999543
No 55
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=69.90 E-value=35 Score=33.26 Aligned_cols=115 Identities=16% Similarity=0.264 Sum_probs=63.1
Q ss_pred CceEEEeeecceeeCCCccc-cHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEE
Q 008086 91 AVRLFVGLPLDTVSDANTVN-HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVS 169 (578)
Q Consensus 91 ~vpvyVmLPLd~V~~~n~~~-~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vv 169 (578)
.+|+-+++ -+...++... ..+.-..-|+.+-.+|++.|.|+.+ .+..+......+++.+-|+ |
T Consensus 54 ~~piI~T~--R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~------------~~~~~~~~~~~~~~~~~~i--I 117 (224)
T PF01487_consen 54 DLPIIFTV--RTKEEGGRFQGSEEEYLELLERAIRLGPDYIDIELD------------LFPDDLKSRLAARKGGTKI--I 117 (224)
T ss_dssp TSEEEEE----BGGGTSSBSS-HHHHHHHHHHHHHHTSSEEEEEGG------------CCHHHHHHHHHHHHTTSEE--E
T ss_pred CCCEEEEe--cccccCCCCcCCHHHHHHHHHHHHHcCCCEEEEEcc------------cchhHHHHHHHHhhCCCeE--E
Confidence 45655554 3334455443 2334445667777788999988654 1333334477788888888 9
Q ss_pred EeeecCCCCCCCCChh--hHhhhccCCCeeeecCCCCccccccccccCcccc-cCCCChhHHHHHHHHHHHHhhchh
Q 008086 170 LCFHALKQPKIPLPDW--VSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPV-LDGKTPIQVYQEFCESFKSSFKPF 243 (578)
Q Consensus 170 msFH~cg~~~IpLP~W--V~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pv-l~GRTpiq~Y~dfm~SF~~~f~~~ 243 (578)
+|+|-.. .-|.| +.+ ...++..+++|-+-+ ...+++.++.+ +..|...+...
T Consensus 118 ~S~H~f~----~tp~~~~l~~----------------~~~~~~~~gadivKia~~~~~~~D~~~--l~~~~~~~~~~ 172 (224)
T PF01487_consen 118 LSYHDFE----KTPSWEELIE----------------LLEEMQELGADIVKIAVMANSPEDVLR--LLRFTKEFREE 172 (224)
T ss_dssp EEEEESS-------THHHHHH----------------HHHHHHHTT-SEEEEEEE-SSHHHHHH--HHHHHHHHHHH
T ss_pred EEeccCC----CCCCHHHHHH----------------HHHHHHhcCCCeEEEEeccCCHHHHHH--HHHHHHHHhhc
Confidence 9999432 13444 222 124455677776554 35566655555 55566666655
No 56
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=69.82 E-value=13 Score=37.23 Aligned_cols=55 Identities=18% Similarity=0.149 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCcceEEecceeecc---ccCCCccccchHHHHHHHHHHHcCCcEEEEEee
Q 008086 116 AAGLKALKLLGVEGVELPVWWGVA---EKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (578)
Q Consensus 116 ~~~L~~LK~~GV~GV~vdVWWGiv---E~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsF 172 (578)
+..|+.||++|++.|.++.= +.- ++- -+..+|..+.+.++.++++|+++.+-+-+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i-~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~ 180 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNI-ISTHTYDDRVDTLENAKKAGLKVCSGGIF 180 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhc-cCCCCHHHHHHHHHHHHHcCCEEEEeEEE
Confidence 46889999999999988743 321 111 13468999999999999999987555444
No 57
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=69.47 E-value=9.1 Score=43.31 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=39.1
Q ss_pred HHHHHHH-HHHHHcCcceEEe-cceeeccccCCCccccc-----------------hHHHHHHHHHHHcCCcEEEEEee
Q 008086 113 KAIAAGL-KALKLLGVEGVEL-PVWWGVAEKEAMGKYNW-----------------SGYLAVAEMVEKIGLKLHVSLCF 172 (578)
Q Consensus 113 ~a~~~~L-~~LK~~GV~GV~v-dVWWGivE~~~p~~YdW-----------------sgY~~l~~mv~~~GLKl~vvmsF 172 (578)
++|...| ..||++||+.|.+ ||... |...+| ..++++++.+++.||+|..=+-+
T Consensus 156 ~~i~~~l~dyl~~LGvt~i~L~Pi~e~------~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~ 228 (613)
T TIGR01515 156 RELADQLIPYVKELGFTHIELLPVAEH------PFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVP 228 (613)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccC------CCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 5667776 9999999999999 76431 222222 24889999999999999544444
No 58
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=68.39 E-value=49 Score=34.29 Aligned_cols=111 Identities=18% Similarity=0.215 Sum_probs=72.6
Q ss_pred CCCceEEEeeecceeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEE
Q 008086 89 LDAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHV 168 (578)
Q Consensus 89 ~~~vpvyVmLPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~v 168 (578)
...+|+++|.=.+.|- ...+++=++.++++||+||-++-- | +....++.+.++++||++..
T Consensus 85 ~~~~pivlm~Y~N~i~-------~~G~e~F~~~~~~aGvdGlIipDL--------P----~ee~~~~~~~~~~~gl~~I~ 145 (259)
T PF00290_consen 85 EPDIPIVLMTYYNPIF-------QYGIERFFKEAKEAGVDGLIIPDL--------P----PEESEELREAAKKHGLDLIP 145 (259)
T ss_dssp CTSSEEEEEE-HHHHH-------HH-HHHHHHHHHHHTEEEEEETTS--------B----GGGHHHHHHHHHHTT-EEEE
T ss_pred CCCCCEEEEeeccHHh-------ccchHHHHHHHHHcCCCEEEEcCC--------C----hHHHHHHHHHHHHcCCeEEE
Confidence 3578999997444332 235667899999999999999832 2 34557889999999999866
Q ss_pred EEeeecCCCCCCCCChhhHhhhccCCCeee-ecCCCCccccccccccCcccccCCCChh-HHHHHHHHHHHHhh
Q 008086 169 SLCFHALKQPKIPLPDWVSQIGESQSSIFY-TDQSGQQFKGCLSLAVDDLPVLDGKTPI-QVYQEFCESFKSSF 240 (578)
Q Consensus 169 vmsFH~cg~~~IpLP~WV~~~g~~~pdI~y-tD~~G~r~~E~LSl~vD~~pvl~GRTpi-q~Y~dfm~SF~~~f 240 (578)
..+- -..+..+.++.+.-+...| ....|.. +.|+.+ ..+.++.+..|+..
T Consensus 146 lv~p-------~t~~~Ri~~i~~~a~gFiY~vs~~GvT---------------G~~~~~~~~l~~~i~~ik~~~ 197 (259)
T PF00290_consen 146 LVAP-------TTPEERIKKIAKQASGFIYLVSRMGVT---------------GSRTELPDELKEFIKRIKKHT 197 (259)
T ss_dssp EEET-------TS-HHHHHHHHHH-SSEEEEESSSSSS---------------STTSSCHHHHHHHHHHHHHTT
T ss_pred EECC-------CCCHHHHHHHHHhCCcEEEeeccCCCC---------------CCcccchHHHHHHHHHHHhhc
Confidence 6553 1356788887766566544 4666643 455543 34677777777665
No 59
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=67.55 E-value=19 Score=32.75 Aligned_cols=56 Identities=16% Similarity=0.282 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHc-CCcEEEEEeee
Q 008086 112 AKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKI-GLKLHVSLCFH 173 (578)
Q Consensus 112 ~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~-GLKl~vvmsFH 173 (578)
.+.+...++.||..|||.|.+..= ++-....+ --..++++.+++++. |++| |..+|
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC--~~~~~~~~--~CP~~~~~~~~I~~~~gi~V--V~GTH 107 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSC--MVKGNPHG--PCPHIDEIKKIIEEKFGIEV--VEGTH 107 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCC--EecCCCCC--CCCCHHHHHHHHHHHhCCCE--eeecC
Confidence 556778999999999999988642 22211111 334499999999999 9987 88888
No 60
>PRK10785 maltodextrin glucosidase; Provisional
Probab=66.73 E-value=48 Score=37.64 Aligned_cols=110 Identities=19% Similarity=0.265 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHcCcceEEecceeeccccCCCcccc-------------chHHHHHHHHHHHcCCcEEEEEeeecCCCC
Q 008086 112 AKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYN-------------WSGYLAVAEMVEKIGLKLHVSLCFHALKQP 178 (578)
Q Consensus 112 ~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Yd-------------WsgY~~l~~mv~~~GLKl~vvmsFH~cg~~ 178 (578)
-+.|.+.|..||+|||++|-+.=- .|..+--.|+ ...+++|++.+++.|+||..=+-|.-|+.-
T Consensus 178 l~GI~~kLdYL~~LGv~~I~L~Pi---f~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~ 254 (598)
T PRK10785 178 LDGISEKLPYLKKLGVTALYLNPI---FTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDS 254 (598)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCc---ccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCC
Confidence 368999999999999999988532 2333233343 357899999999999999777777655532
Q ss_pred CCCCChhhHhhhc-----------cCCCeeeecCCCCcccccccc-ccCcccccCCCChhHHHHHHHH
Q 008086 179 KIPLPDWVSQIGE-----------SQSSIFYTDQSGQQFKGCLSL-AVDDLPVLDGKTPIQVYQEFCE 234 (578)
Q Consensus 179 ~IpLP~WV~~~g~-----------~~pdI~ytD~~G~r~~E~LSl-~vD~~pvl~GRTpiq~Y~dfm~ 234 (578)
. .|+..... .+.|-|+-+..|. +.++ +++.+|-|.=.. +..++++.
T Consensus 255 ~----~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~----~~~w~g~~~lPdLN~~n--p~v~~~l~ 312 (598)
T PRK10785 255 H----PWFDRHNRGTGGACHHPDSPWRDWYSFSDDGR----ALDWLGYASLPKLDFQS--EEVVNEIY 312 (598)
T ss_pred C----HHHHHhhccccccccCCCCCcceeeEECCCCC----cCCcCCCCcCccccCCC--HHHHHHHH
Confidence 1 27654321 1223444444443 2333 357788886444 45666664
No 61
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=66.33 E-value=68 Score=32.79 Aligned_cols=88 Identities=9% Similarity=0.202 Sum_probs=58.8
Q ss_pred cccHHHHHHHHHHHHHcC--cceEEecceeeccccCCCccccch-----HHHHHHHHHHHcCCcEEEEEeeecCCCCCCC
Q 008086 109 VNHAKAIAAGLKALKLLG--VEGVELPVWWGVAEKEAMGKYNWS-----GYLAVAEMVEKIGLKLHVSLCFHALKQPKIP 181 (578)
Q Consensus 109 ~~~~~a~~~~L~~LK~~G--V~GV~vdVWWGivE~~~p~~YdWs-----gY~~l~~mv~~~GLKl~vvmsFH~cg~~~Ip 181 (578)
....+.+.+-++.++++| +|.+.+|.=|- ...+-+.|+|+ .-+++++-+++.|+|+ ++..|-.-..+
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~--~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~--~~~~~P~i~~~-- 93 (308)
T cd06593 20 YYDEEEVNEFADGMRERNLPCDVIHLDCFWM--KEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKV--CLWINPYIAQK-- 93 (308)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccc--cCCcceeeEECcccCCCHHHHHHHHHHCCCeE--EEEecCCCCCC--
Confidence 356778889999999999 88899997333 22222355555 6789999999999998 66665321111
Q ss_pred CChhhHhhhccCCCeeeecCCCCc
Q 008086 182 LPDWVSQIGESQSSIFYTDQSGQQ 205 (578)
Q Consensus 182 LP~WV~~~g~~~pdI~ytD~~G~r 205 (578)
-| +-+++ ..++.|.++.+|..
T Consensus 94 ~~--~~~e~-~~~g~~v~~~~g~~ 114 (308)
T cd06593 94 SP--LFKEA-AEKGYLVKKPDGSV 114 (308)
T ss_pred ch--hHHHH-HHCCeEEECCCCCe
Confidence 22 22333 34578998888764
No 62
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=64.59 E-value=83 Score=32.49 Aligned_cols=83 Identities=12% Similarity=0.237 Sum_probs=53.9
Q ss_pred ccHHHHHHHHHHHHHcC--cceEEecceeeccccCCCccccc-----hHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCC
Q 008086 110 NHAKAIAAGLKALKLLG--VEGVELPVWWGVAEKEAMGKYNW-----SGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPL 182 (578)
Q Consensus 110 ~~~~a~~~~L~~LK~~G--V~GV~vdVWWGivE~~~p~~YdW-----sgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpL 182 (578)
...+.+.+-++.+++.| ++.|.+|.-|-. ..|.|.| ..-+++++-+++.|+|+ ++..+- .|..
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~g~f~~d~~~FPdp~~mi~~l~~~G~k~--~l~i~P----~i~~ 96 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET----CYGDFDFDPTKFPDPKGMIDQLHDLGFRV--TLWVHP----FINT 96 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc----cCCccccChhhCCCHHHHHHHHHHCCCeE--EEEECC----eeCC
Confidence 35667888999999988 689999986532 2344444 34677888889999998 554432 2222
Q ss_pred ChhhHhhhccCCCeeeecCCC
Q 008086 183 PDWVSQIGESQSSIFYTDQSG 203 (578)
Q Consensus 183 P~WV~~~g~~~pdI~ytD~~G 203 (578)
..=+-+.+ ...+.+.++.+|
T Consensus 97 ~s~~~~e~-~~~g~~vk~~~g 116 (303)
T cd06592 97 DSENFREA-VEKGYLVSEPSG 116 (303)
T ss_pred CCHHHHhh-hhCCeEEECCCC
Confidence 11222333 344688899888
No 63
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=64.35 E-value=18 Score=35.55 Aligned_cols=52 Identities=23% Similarity=0.391 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCcceEEecceeeccccC-CCccccch--HHHHHHHHHHHcCCcEEEE
Q 008086 114 AIAAGLKALKLLGVEGVELPVWWGVAEKE-AMGKYNWS--GYLAVAEMVEKIGLKLHVS 169 (578)
Q Consensus 114 a~~~~L~~LK~~GV~GV~vdVWWGivE~~-~p~~YdWs--gY~~l~~mv~~~GLKl~vv 169 (578)
.++..+++++++|+++|++.+- +.. .....+|+ .-.++.++++++||++..+
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~ 71 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVD----ESDERLARLDWSKEERLSLVKAIYETGVRIPSM 71 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecC----CcccccccccCCHHHHHHHHHHHHHcCCCceEE
Confidence 5678999999999999999532 211 12234554 3678999999999999543
No 64
>PLN02361 alpha-amylase
Probab=63.52 E-value=22 Score=38.79 Aligned_cols=63 Identities=11% Similarity=0.067 Sum_probs=46.7
Q ss_pred cHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccc-------------hHHHHHHHHHHHcCCcEEEEEee-ecCC
Q 008086 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNW-------------SGYLAVAEMVEKIGLKLHVSLCF-HALK 176 (578)
Q Consensus 111 ~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdW-------------sgY~~l~~mv~~~GLKl~vvmsF-H~cg 176 (578)
.-+.|.+.|..||++||++|-++-=. |..++..|+- +.++++++.+++.|+||.+=+-+ |-||
T Consensus 27 ~w~~i~~kl~~l~~lG~t~iwl~P~~---~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g 103 (401)
T PLN02361 27 WWRNLEGKVPDLAKSGFTSAWLPPPS---QSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVG 103 (401)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCC---cCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccccC
Confidence 45788999999999999999887533 2222223332 46899999999999999665555 7665
No 65
>PRK12313 glycogen branching enzyme; Provisional
Probab=63.49 E-value=13 Score=42.23 Aligned_cols=76 Identities=12% Similarity=0.200 Sum_probs=46.2
Q ss_pred CceEEEeeecceee-CCCccccHHHHHHH-HHHHHHcCcceEEe-cceeeccccCCCccccc-----------------h
Q 008086 91 AVRLFVGLPLDTVS-DANTVNHAKAIAAG-LKALKLLGVEGVEL-PVWWGVAEKEAMGKYNW-----------------S 150 (578)
Q Consensus 91 ~vpvyVmLPLd~V~-~~n~~~~~~a~~~~-L~~LK~~GV~GV~v-dVWWGivE~~~p~~YdW-----------------s 150 (578)
..-+|-+-+=+--. +.+..-.=+.+... |..||++||+.|.+ ||+ | .|...+| .
T Consensus 147 ~~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~----~--~~~~~~~GY~~~~y~~i~~~~Gt~~ 220 (633)
T PRK12313 147 PISIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLM----E--HPLDGSWGYQLTGYFAPTSRYGTPE 220 (633)
T ss_pred CceEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchh----c--CCCCCCCCCCCcCcCcCCCCCCCHH
Confidence 34456555443211 12222233566667 49999999999985 442 2 1222233 3
Q ss_pred HHHHHHHHHHHcCCcEEEEEee
Q 008086 151 GYLAVAEMVEKIGLKLHVSLCF 172 (578)
Q Consensus 151 gY~~l~~mv~~~GLKl~vvmsF 172 (578)
.++++++.+++.||+|..=+-+
T Consensus 221 d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 221 DFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHHCCCEEEEEECC
Confidence 5899999999999999444444
No 66
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=61.74 E-value=12 Score=42.31 Aligned_cols=63 Identities=29% Similarity=0.545 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCcceEEe-cce--eeccccCCCcccc-------------------------chHHHHHHHHHHHcCCc
Q 008086 114 AIAAGLKALKLLGVEGVEL-PVW--WGVAEKEAMGKYN-------------------------WSGYLAVAEMVEKIGLK 165 (578)
Q Consensus 114 a~~~~L~~LK~~GV~GV~v-dVW--WGivE~~~p~~Yd-------------------------WsgY~~l~~mv~~~GLK 165 (578)
.+...|..||++||+.|.+ ||. -++-|+.+...|+ ...++++++.+++.||+
T Consensus 165 g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~ 244 (605)
T TIGR02104 165 GVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIR 244 (605)
T ss_pred cchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCE
Confidence 4456799999999999987 333 1111111111122 35689999999999999
Q ss_pred EEEEEee-ecCC
Q 008086 166 LHVSLCF-HALK 176 (578)
Q Consensus 166 l~vvmsF-H~cg 176 (578)
|..=+-| |-++
T Consensus 245 VilDvV~NH~~~ 256 (605)
T TIGR02104 245 VIMDVVYNHTYS 256 (605)
T ss_pred EEEEEEcCCccC
Confidence 9777777 6554
No 67
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=61.52 E-value=13 Score=38.39 Aligned_cols=75 Identities=12% Similarity=0.068 Sum_probs=47.3
Q ss_pred HHHHHHHHcCcceEEecceeeccccCCCcccc---chHHHHHHHHHHHc--CCcEEEEEeeecCCCCCCCCChhhHhhhc
Q 008086 117 AGLKALKLLGVEGVELPVWWGVAEKEAMGKYN---WSGYLAVAEMVEKI--GLKLHVSLCFHALKQPKIPLPDWVSQIGE 191 (578)
Q Consensus 117 ~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Yd---WsgY~~l~~mv~~~--GLKl~vvmsFH~cg~~~IpLP~WV~~~g~ 191 (578)
+-++++.++|++++.+.-=|+- -=+|..|+ +-+++++++-+++. +.. | .|-||+.+ ++-.++.+
T Consensus 184 ~~~~~~~eaGad~i~i~d~~~~--~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~---i--lh~cg~~~-~~~~~~~~--- 252 (338)
T TIGR01464 184 EYLVEQVKAGAQAVQIFDSWAG--ALSPEDFEEFVLPYLKKIIEEVKARLPNVP---V--ILFAKGAG-HLLEELAE--- 252 (338)
T ss_pred HHHHHHHHcCCCEEEEECCccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCCCC---E--EEEeCCcH-HHHHHHHh---
Confidence 3445567799999985442442 23455666 99999999999987 433 3 44566443 45555555
Q ss_pred cCCCeeeecCC
Q 008086 192 SQSSIFYTDQS 202 (578)
Q Consensus 192 ~~pdI~ytD~~ 202 (578)
...+++-.|..
T Consensus 253 ~~~~~~s~d~~ 263 (338)
T TIGR01464 253 TGADVVGLDWT 263 (338)
T ss_pred cCCCEEEeCCC
Confidence 34577766664
No 68
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=60.93 E-value=11 Score=40.66 Aligned_cols=52 Identities=19% Similarity=0.303 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCcceEEec---ce-eeccccCCCccccchHHHHHHHHHHHcCCcEEEEE
Q 008086 114 AIAAGLKALKLLGVEGVELP---VW-WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSL 170 (578)
Q Consensus 114 a~~~~L~~LK~~GV~GV~vd---VW-WGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvm 170 (578)
.+...+++++++|.+||++. +| |+..+.+. + .-+.++.+++++.||++..+.
T Consensus 33 ~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~----~-~~~~~lk~~L~~~GL~v~~v~ 88 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER----D-QIVRRFKKALDETGLKVPMVT 88 (382)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhHH----H-HHHHHHHHHHHHhCCeEEEee
Confidence 45578999999999999975 23 44443221 1 225689999999999985543
No 69
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=59.64 E-value=13 Score=38.16 Aligned_cols=75 Identities=19% Similarity=0.147 Sum_probs=49.2
Q ss_pred HHHHHHHHcCcceEEecceeeccccCCCcccc---chHHHHHHHHHHHc--CCcEEEEEeeecCCCCCCCCChhhHhhhc
Q 008086 117 AGLKALKLLGVEGVELPVWWGVAEKEAMGKYN---WSGYLAVAEMVEKI--GLKLHVSLCFHALKQPKIPLPDWVSQIGE 191 (578)
Q Consensus 117 ~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Yd---WsgY~~l~~mv~~~--GLKl~vvmsFH~cg~~~IpLP~WV~~~g~ 191 (578)
.-.+++.++|+++|.+.-=|+- -=+|..|+ +-.++++++-+++. |.++ .|-||+.. ++-.++.+.
T Consensus 181 ~~~~~~ieaGad~i~i~d~~~~--~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~i-----lh~cg~~~-~~~~~~~~~-- 250 (335)
T cd00717 181 EYLKAQIEAGAQAVQIFDSWAG--ALSPEDFEEFVLPYLKRIIEEVKKRLPGVPV-----ILFAKGAG-GLLEDLAQL-- 250 (335)
T ss_pred HHHHHHHHhCCCEEEEeCcccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-----EEEcCCCH-HHHHHHHhc--
Confidence 3445566799999975442432 23455666 99999999999998 4433 45566554 666666664
Q ss_pred cCCCeeeecCC
Q 008086 192 SQSSIFYTDQS 202 (578)
Q Consensus 192 ~~pdI~ytD~~ 202 (578)
..+++-.|..
T Consensus 251 -~~~~~s~d~~ 260 (335)
T cd00717 251 -GADVVGLDWR 260 (335)
T ss_pred -CCCEEEeCCC
Confidence 3567766665
No 70
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=59.58 E-value=21 Score=34.77 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEE
Q 008086 114 AIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLH 167 (578)
Q Consensus 114 a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~ 167 (578)
.++..++.++++|.+||++.. | ++. ...++.++++++||++.
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~---------~--~~~-~~~~l~~~l~~~gl~v~ 56 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLF---------P--YDW-DAEALKARLAAAGLEQV 56 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecC---------C--ccC-CHHHHHHHHHHcCCeEE
Confidence 578899999999999999842 1 122 25678889999999984
No 71
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=58.33 E-value=19 Score=36.99 Aligned_cols=75 Identities=12% Similarity=0.042 Sum_probs=48.1
Q ss_pred HHHHHHHHcCcceEEecceeeccccCCCcccc---chHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhhHhhhccC
Q 008086 117 AGLKALKLLGVEGVELPVWWGVAEKEAMGKYN---WSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQ 193 (578)
Q Consensus 117 ~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Yd---WsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~~~g~~~ 193 (578)
+-++++.++|+++|.+..-|+-..-=+|..|. +-+++++++-+++ + . ...|-||... ++-.++.+ ..
T Consensus 175 ~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~-~-~----~ilh~cG~~~-~~l~~~~~---~g 244 (326)
T cd03307 175 EYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG-C-P----TILHICGNTT-PILEYIAQ---CG 244 (326)
T ss_pred HHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc-C-C----cEEEECCCCh-hHHHHHHH---cC
Confidence 45566778899999998888744322466666 9999999999987 2 1 2258888632 22223333 34
Q ss_pred CCeeeecC
Q 008086 194 SSIFYTDQ 201 (578)
Q Consensus 194 pdI~ytD~ 201 (578)
.|++-.|.
T Consensus 245 ~d~~~~d~ 252 (326)
T cd03307 245 FDGISVDE 252 (326)
T ss_pred CCeecccc
Confidence 45555554
No 72
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=57.67 E-value=31 Score=37.58 Aligned_cols=74 Identities=24% Similarity=0.349 Sum_probs=47.5
Q ss_pred cHHHHHHHHHHHHHcCcceEEecceee-----------ccccCCCccccchHHHHHHHHHHHcCCcEEEEEeee--cCC-
Q 008086 111 HAKAIAAGLKALKLLGVEGVELPVWWG-----------VAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH--ALK- 176 (578)
Q Consensus 111 ~~~a~~~~L~~LK~~GV~GV~vdVWWG-----------ivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH--~cg- 176 (578)
+.+.+.+.++++|.+|++-+.||-=|- .-+.. +.+|= +|...+++-|++.|+|. =|.|= .++
T Consensus 56 ~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~-~~kFP-~Gl~~l~~~i~~~Gmk~--GlW~ePe~v~~ 131 (394)
T PF02065_consen 56 TEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPD-PKKFP-NGLKPLADYIHSLGMKF--GLWFEPEMVSP 131 (394)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBB-TTTST-THHHHHHHHHHHTT-EE--EEEEETTEEES
T ss_pred CHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEC-hhhhC-CcHHHHHHHHHHCCCeE--EEEeccccccc
Confidence 567888899999999999999987663 23322 33442 58999999999999998 44441 111
Q ss_pred --CCCCCCChhhHh
Q 008086 177 --QPKIPLPDWVSQ 188 (578)
Q Consensus 177 --~~~IpLP~WV~~ 188 (578)
...-.-|+|+..
T Consensus 132 ~S~l~~~hPdw~l~ 145 (394)
T PF02065_consen 132 DSDLYREHPDWVLR 145 (394)
T ss_dssp SSCHCCSSBGGBTC
T ss_pred hhHHHHhCccceee
Confidence 122236778765
No 73
>PRK04302 triosephosphate isomerase; Provisional
Probab=57.13 E-value=25 Score=34.54 Aligned_cols=48 Identities=23% Similarity=0.285 Sum_probs=36.6
Q ss_pred HHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeec
Q 008086 117 AGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHA 174 (578)
Q Consensus 117 ~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~ 174 (578)
..++.||++|+++|.++- ++....+..-.++++.+++.||.+ |+|.|.
T Consensus 76 ~~~~~l~~~G~~~vii~~--------ser~~~~~e~~~~v~~a~~~Gl~~--I~~v~~ 123 (223)
T PRK04302 76 ILPEAVKDAGAVGTLINH--------SERRLTLADIEAVVERAKKLGLES--VVCVNN 123 (223)
T ss_pred hHHHHHHHcCCCEEEEec--------cccccCHHHHHHHHHHHHHCCCeE--EEEcCC
Confidence 458999999999999873 333444555678889999999887 678764
No 74
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=56.52 E-value=25 Score=38.20 Aligned_cols=59 Identities=27% Similarity=0.382 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCcceEEecceeecccc----CCCccccchHHHHHHHHHHHcCCcEEEEEeeecCC
Q 008086 116 AAGLKALKLLGVEGVELPVWWGVAEK----EAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALK 176 (578)
Q Consensus 116 ~~~L~~LK~~GV~GV~vdVWWGivE~----~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg 176 (578)
...|..||+.||.-|.+-||=---.. -+-|.=|-..-.++++-+++.|+|| .+-||-.+
T Consensus 66 qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKV--l~dFHYSD 128 (403)
T COG3867 66 QDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKV--LLDFHYSD 128 (403)
T ss_pred HHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEE--Eeeccchh
Confidence 35789999999999999999322111 1234455556666777778889998 99999764
No 75
>PLN02389 biotin synthase
Probab=56.02 E-value=24 Score=38.13 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCcceEEecce--eeccccCCCccccchHHHHHHHHHHHcCCcE
Q 008086 116 AAGLKALKLLGVEGVELPVW--WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (578)
Q Consensus 116 ~~~L~~LK~~GV~GV~vdVW--WGivE~~~p~~YdWsgY~~l~~mv~~~GLKl 166 (578)
+..|++||++|++.+.+..= -....+-.+ .-+|..+.+.++.+++.|+++
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~-~~s~e~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVIT-TRSYDDRLETLEAVREAGISV 229 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCC-CCCHHHHHHHHHHHHHcCCeE
Confidence 47999999999999987321 111111112 238999999999999999987
No 76
>PLN02591 tryptophan synthase
Probab=55.59 E-value=59 Score=33.41 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=59.0
Q ss_pred CCceEEEeeecceeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEE
Q 008086 90 DAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVS 169 (578)
Q Consensus 90 ~~vpvyVmLPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vv 169 (578)
..+|+.+|.=... +- .-.+++=++.+|++||+||-++-. -+..-.++.+.++++||...+.
T Consensus 77 ~~~p~ilm~Y~N~------i~-~~G~~~F~~~~~~aGv~GviipDL------------P~ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 77 LSCPIVLFTYYNP------IL-KRGIDKFMATIKEAGVHGLVVPDL------------PLEETEALRAEAAKNGIELVLL 137 (250)
T ss_pred CCCCEEEEecccH------HH-HhHHHHHHHHHHHcCCCEEEeCCC------------CHHHHHHHHHHHHHcCCeEEEE
Confidence 3568777764333 32 236678899999999999999821 2355668999999999999544
Q ss_pred EeeecCCCCCCCCChhhHhhhccCCCeeee-cCCCC
Q 008086 170 LCFHALKQPKIPLPDWVSQIGESQSSIFYT-DQSGQ 204 (578)
Q Consensus 170 msFH~cg~~~IpLP~WV~~~g~~~pdI~yt-D~~G~ 204 (578)
.+- + +-+..+..+.+.-+...|. .+.|.
T Consensus 138 v~P------t-t~~~ri~~ia~~~~gFIY~Vs~~Gv 166 (250)
T PLN02591 138 TTP------T-TPTERMKAIAEASEGFVYLVSSTGV 166 (250)
T ss_pred eCC------C-CCHHHHHHHHHhCCCcEEEeeCCCC
Confidence 432 2 2356888877666664432 44443
No 77
>PRK09989 hypothetical protein; Provisional
Probab=54.93 E-value=27 Score=34.32 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEE
Q 008086 113 KAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLH 167 (578)
Q Consensus 113 ~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~ 167 (578)
.-+...|++++++|.+||++.. +..++ -.++.++++++||++.
T Consensus 15 ~~l~~~l~~~~~~Gfd~VEl~~---------~~~~~---~~~~~~~l~~~Gl~v~ 57 (258)
T PRK09989 15 VPFIERFAAARKAGFDAVEFLF---------PYDYS---TLQIQKQLEQNHLTLA 57 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEECC---------cccCC---HHHHHHHHHHcCCcEE
Confidence 3467899999999999999942 22233 3578888999999983
No 78
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=54.47 E-value=18 Score=35.60 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcE
Q 008086 114 AIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (578)
Q Consensus 114 a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl 166 (578)
.++..|++++++|.+||++. + +.. ....++.++++++||++
T Consensus 16 ~l~~~l~~~a~~Gf~~VEl~---~------~~~---~~~~~~~~~l~~~gl~~ 56 (258)
T PRK09997 16 DFLARFEKAAQCGFRGVEFM---F------PYD---YDIEELKQVLASNKLEH 56 (258)
T ss_pred CHHHHHHHHHHhCCCEEEEc---C------CCC---CCHHHHHHHHHHcCCcE
Confidence 47788999999999999992 2 111 23678899999999998
No 79
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=54.43 E-value=33 Score=38.57 Aligned_cols=64 Identities=14% Similarity=0.347 Sum_probs=44.2
Q ss_pred cccHHHHHHHHHHHHHcCcceEEecceeeccccCCCcccc-------------chHHHHHHHHHHHcCCcEEEEEeeec
Q 008086 109 VNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYN-------------WSGYLAVAEMVEKIGLKLHVSLCFHA 174 (578)
Q Consensus 109 ~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Yd-------------WsgY~~l~~mv~~~GLKl~vvmsFH~ 174 (578)
.-+-+.|.+.|..||.+||++|-+.=-+-. +.....|+ ...++++++.+++.|+||.+=+-+--
T Consensus 29 ~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH 105 (551)
T PRK10933 29 TGDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNH 105 (551)
T ss_pred CcCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 445568889999999999999977433210 01112232 35689999999999999966655543
No 80
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=53.13 E-value=91 Score=30.67 Aligned_cols=51 Identities=8% Similarity=0.016 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcE
Q 008086 114 AIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (578)
Q Consensus 114 a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl 166 (578)
.++..|+.+.++|+++|++. .+-.....+..++=....++-+++++.||++
T Consensus 11 ~~~~~~~~~~~~G~~~vel~--~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~l 61 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLF--LGNPRSWKGVRLSEETAEKFKEALKENNIDV 61 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEE--CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 46689999999999999983 2222111111233345888999999999985
No 81
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=53.11 E-value=32 Score=35.28 Aligned_cols=90 Identities=14% Similarity=0.216 Sum_probs=61.2
Q ss_pred CCceEEEeeecceeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEE
Q 008086 90 DAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVS 169 (578)
Q Consensus 90 ~~vpvyVmLPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vv 169 (578)
..+|+.+|.=...|- .-.+++-++.+|++||+||-++- .-+....++++.++++||++.+.
T Consensus 88 ~~~p~vlm~Y~N~i~-------~~G~e~f~~~~~~aGvdGviipD------------Lp~ee~~~~~~~~~~~gl~~I~l 148 (258)
T PRK13111 88 PTIPIVLMTYYNPIF-------QYGVERFAADAAEAGVDGLIIPD------------LPPEEAEELRAAAKKHGLDLIFL 148 (258)
T ss_pred CCCCEEEEecccHHh-------hcCHHHHHHHHHHcCCcEEEECC------------CCHHHHHHHHHHHHHcCCcEEEE
Confidence 357887776444332 22456789999999999999971 12356779999999999999643
Q ss_pred EeeecCCCCCCCCChhhHhhhccCCC-eeeecCCCCc
Q 008086 170 LCFHALKQPKIPLPDWVSQIGESQSS-IFYTDQSGQQ 205 (578)
Q Consensus 170 msFH~cg~~~IpLP~WV~~~g~~~pd-I~ytD~~G~r 205 (578)
+ . |+- .+..+..+.+..++ |++....|..
T Consensus 149 v-a-----p~t-~~eri~~i~~~s~gfIY~vs~~GvT 178 (258)
T PRK13111 149 V-A-----PTT-TDERLKKIASHASGFVYYVSRAGVT 178 (258)
T ss_pred e-C-----CCC-CHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 3 3 232 46788877777777 4444665543
No 82
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=52.50 E-value=26 Score=43.08 Aligned_cols=61 Identities=23% Similarity=0.444 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHcCcceEEe-cce-eeccc-cC----------CCccccch-------------------------HHH
Q 008086 112 AKAIAAGLKALKLLGVEGVEL-PVW-WGVAE-KE----------AMGKYNWS-------------------------GYL 153 (578)
Q Consensus 112 ~~a~~~~L~~LK~~GV~GV~v-dVW-WGivE-~~----------~p~~YdWs-------------------------gY~ 153 (578)
-.++...|..||+|||..|.+ ||+ .+.+. .. +...|||- .++
T Consensus 479 f~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK 558 (1111)
T TIGR02102 479 FAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEFK 558 (1111)
T ss_pred HHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHHH
Confidence 357888899999999999976 444 33221 11 12345554 478
Q ss_pred HHHHHHHHcCCcEEEEEee
Q 008086 154 AVAEMVEKIGLKLHVSLCF 172 (578)
Q Consensus 154 ~l~~mv~~~GLKl~vvmsF 172 (578)
++++.+++.||+|..=+-|
T Consensus 559 ~LV~alH~~GI~VILDVVy 577 (1111)
T TIGR02102 559 NLINEIHKRGMGVILDVVY 577 (1111)
T ss_pred HHHHHHHHCCCEEEEeccc
Confidence 8999999999999554444
No 83
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=51.36 E-value=29 Score=33.60 Aligned_cols=42 Identities=24% Similarity=0.433 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHc--CCcEEEEEee
Q 008086 113 KAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKI--GLKLHVSLCF 172 (578)
Q Consensus 113 ~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~--GLKl~vvmsF 172 (578)
+++++-|+.|+++||+||+|.- + .+++++++. ++++++...+
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~---------~---------g~~~~~k~~~~~~~i~~~~~~ 45 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSN---------P---------GLLELLKELGPDLKIIADYSL 45 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcC---------H---------HHHHHHHHhCCCCcEEEecCc
Confidence 4688999999999999999972 2 578889999 6677555444
No 84
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=50.69 E-value=1e+02 Score=31.53 Aligned_cols=131 Identities=12% Similarity=0.148 Sum_probs=78.2
Q ss_pred HHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhhHhhhc----c
Q 008086 117 AGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGE----S 192 (578)
Q Consensus 117 ~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~~~g~----~ 192 (578)
..|+.....||+.|.+.+ ...+++...+.++.+++.|+++.+.+.. ..-.-|..+.+..+ .
T Consensus 86 ~~l~~a~~~gv~~iri~~----------~~~~~~~~~~~i~~ak~~G~~v~~~~~~-----a~~~~~~~~~~~~~~~~~~ 150 (266)
T cd07944 86 DLLEPASGSVVDMIRVAF----------HKHEFDEALPLIKAIKEKGYEVFFNLMA-----ISGYSDEELLELLELVNEI 150 (266)
T ss_pred HHHHHHhcCCcCEEEEec----------ccccHHHHHHHHHHHHHCCCeEEEEEEe-----ecCCCHHHHHHHHHHHHhC
Confidence 478888899999999864 2237888999999999999998777655 11134667665332 2
Q ss_pred CCC-eeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhchhcCCceEeecccccccccccccccccccc
Q 008086 193 QSS-IFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITVRSFDFKQCQVHTISDLHLLWD 271 (578)
Q Consensus 193 ~pd-I~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~g~~I~~~~~~~~~~~~~~~~~~~~~~~ 271 (578)
-++ |.+.|-.|. -||-+ ..++++.+++++.+ +..| .+|+=.|+-|---
T Consensus 151 g~~~i~l~DT~G~------------------~~P~~-v~~lv~~l~~~~~~--~~~i----------~~H~Hn~~Gla~A 199 (266)
T cd07944 151 KPDVFYIVDSFGS------------------MYPED-IKRIISLLRSNLDK--DIKL----------GFHAHNNLQLALA 199 (266)
T ss_pred CCCEEEEecCCCC------------------CCHHH-HHHHHHHHHHhcCC--CceE----------EEEeCCCccHHHH
Confidence 222 445555443 35644 45677777777653 1123 3566666554211
Q ss_pred cccccccccccccceeecccCCCc
Q 008086 272 TDVVSTLQFDSLQGISMGLGPDGE 295 (578)
Q Consensus 272 ~~~~~~~~~~~~~eI~VGLGP~GE 295 (578)
. ...-++ -...-|..++++-||
T Consensus 200 N-~laA~~-aGa~~vd~s~~G~G~ 221 (266)
T cd07944 200 N-TLEAIE-LGVEIIDATVYGMGR 221 (266)
T ss_pred H-HHHHHH-cCCCEEEEecccCCC
Confidence 1 111111 112357777777777
No 85
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=50.07 E-value=97 Score=31.60 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=69.0
Q ss_pred HHHHHHHHcCcceEEecce---eeccccC-CCccccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhhHhhhcc
Q 008086 117 AGLKALKLLGVEGVELPVW---WGVAEKE-AMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGES 192 (578)
Q Consensus 117 ~~L~~LK~~GV~GV~vdVW---WGivE~~-~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~~~g~~ 192 (578)
.++++++..|++.|.+-+= +-+-+.- .....++.-..+.++++++.|+++.+. +.|..++... -|..+.+..+.
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~-~~~~~d~~~~-~~~~~~~~~~~ 159 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFD-AEHFFDGYKA-NPEYALATLKA 159 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEe-EEeccccCCC-CHHHHHHHHHH
Confidence 4677888999999887421 1111111 112446778899999999999998774 3344433333 36776653221
Q ss_pred ----CC-CeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhchhcCCceEeecccccccccccccccc
Q 008086 193 ----QS-SIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITVRSFDFKQCQVHTISDLH 267 (578)
Q Consensus 193 ----~p-dI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~g~~I~~~~~~~~~~~~~~~~~~~ 267 (578)
-. .|.+.|-.| .-||-++ .++.+.+++++.+ ..|- +|+=.|+.
T Consensus 160 ~~~~g~~~i~l~DT~G------------------~~~P~~v-~~lv~~l~~~~~~---~~l~----------~H~Hnd~G 207 (273)
T cd07941 160 AAEAGADWLVLCDTNG------------------GTLPHEI-AEIVKEVRERLPG---VPLG----------IHAHNDSG 207 (273)
T ss_pred HHhCCCCEEEEecCCC------------------CCCHHHH-HHHHHHHHHhCCC---CeeE----------EEecCCCC
Confidence 11 244444444 3457555 5566777777643 2333 57766765
Q ss_pred c
Q 008086 268 L 268 (578)
Q Consensus 268 ~ 268 (578)
|
T Consensus 208 l 208 (273)
T cd07941 208 L 208 (273)
T ss_pred c
Confidence 4
No 86
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=49.31 E-value=13 Score=36.53 Aligned_cols=76 Identities=24% Similarity=0.309 Sum_probs=51.5
Q ss_pred CceEEEeeecceeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEE
Q 008086 91 AVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVS 169 (578)
Q Consensus 91 ~vpvyVmLPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vv 169 (578)
.+++-|.+|...-..... ..+....+.+...++|+++|.+-++|+..... .-.+...--.++.+.|++.|||+.+-
T Consensus 56 ~~~~vi~fp~g~~~~~~k--~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~-~~~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 56 KVGLVIGFPFGTSTTEPK--GYDQIVAEVEEAIRLGADEVDVVINYGALGSG-NEDEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp EEEEEESTTTSSSTHHHH--TCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTT-HHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred ccceEEEeCCCCCccccc--cccchHHHHHHHHHcCCceeeeeccccccccc-cHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 455556666554331111 00001467888899999999999999988764 56667777788888899899998544
No 87
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=48.94 E-value=17 Score=37.19 Aligned_cols=57 Identities=9% Similarity=-0.010 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCcceEEecceee---ccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeecCCCC
Q 008086 116 AAGLKALKLLGVEGVELPVWWG---VAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQP 178 (578)
Q Consensus 116 ~~~L~~LK~~GV~GV~vdVWWG---ivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~ 178 (578)
.+-++++.++|+++|.+..=|+ ++-++--.+|-+-+++++++-+++. ....|-||..
T Consensus 183 ~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~------~~ilH~cG~~ 242 (339)
T PRK06252 183 IEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL------PTILHICGDL 242 (339)
T ss_pred HHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC------CcEEEECCCc
Confidence 4456667789999998887776 3443323344488899999988765 2335889864
No 88
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.56 E-value=1.8e+02 Score=32.48 Aligned_cols=125 Identities=20% Similarity=0.241 Sum_probs=81.7
Q ss_pred CCccccHHHHHHHHHHHHHcCcceEEecce-eecc------ccCCCc-------cccchHHHHHHHHHHHcCCcEEEEEe
Q 008086 106 ANTVNHAKAIAAGLKALKLLGVEGVELPVW-WGVA------EKEAMG-------KYNWSGYLAVAEMVEKIGLKLHVSLC 171 (578)
Q Consensus 106 ~n~~~~~~a~~~~L~~LK~~GV~GV~vdVW-WGiv------E~~~p~-------~YdWsgY~~l~~mv~~~GLKl~vvms 171 (578)
...+..+..+...|..|..+|+..|-.-|| +|.+ .+...+ .=.|.-...+++.++|.||++++=+-
T Consensus 57 ~~v~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~ 136 (418)
T COG1649 57 SRVLFQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFN 136 (418)
T ss_pred CcccccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechh
Confidence 345667888999999999999999999999 8843 221111 11334455666777889999988877
Q ss_pred eecCCCCCCC----CChhhHhhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhchhcC
Q 008086 172 FHALKQPKIP----LPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMG 245 (578)
Q Consensus 172 FH~cg~~~Ip----LP~WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~g 245 (578)
|-.-+-++-+ =|.|... +.|+-.|....|.. +..++++-- ..=++|+.+...+.-.-++
T Consensus 137 ~~~~a~~~s~~~~~~p~~~~~---~~~~~~~~~~~~~~----------~~~~ldPg~--Pevq~~i~~lv~evV~~Yd 199 (418)
T COG1649 137 PYRMAPPTSPLTKRHPHWLTT---KRPGWVYVRHQGWG----------KRVWLDPGI--PEVQDFITSLVVEVVRNYD 199 (418)
T ss_pred hcccCCCCChhHhhCCCCccc---CCCCeEEEecCCce----------eeeEeCCCC--hHHHHHHHHHHHHHHhCCC
Confidence 7544332222 3667766 44566666555532 223666544 4567888888877766664
No 89
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=48.31 E-value=61 Score=36.33 Aligned_cols=66 Identities=18% Similarity=0.298 Sum_probs=47.3
Q ss_pred cccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccc-------------cchHHHHHHHHHHHcCCcEEEEEeeecC
Q 008086 109 VNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKY-------------NWSGYLAVAEMVEKIGLKLHVSLCFHAL 175 (578)
Q Consensus 109 ~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Y-------------dWsgY~~l~~mv~~~GLKl~vvmsFH~c 175 (578)
.-+-+.|.+.|..||.+||++|-+.--.-.-+ ....| ....++++++.+++.|+||..=+-+.-+
T Consensus 23 ~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~ 100 (543)
T TIGR02403 23 TGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQ--KDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHT 100 (543)
T ss_pred ccCHHHHHHhHHHHHHcCCCEEEECCcccCCC--CCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECcccc
Confidence 44566889999999999999998754432211 11234 3467899999999999999776666444
Q ss_pred C
Q 008086 176 K 176 (578)
Q Consensus 176 g 176 (578)
+
T Consensus 101 ~ 101 (543)
T TIGR02403 101 S 101 (543)
T ss_pred c
Confidence 3
No 90
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=48.21 E-value=10 Score=37.37 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcE
Q 008086 112 AKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (578)
Q Consensus 112 ~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl 166 (578)
.+.++++|.+||..||..|-+ ++|...-..|.... +.+.+++.|+++
T Consensus 57 ~RdL~~DL~~Lk~~G~~~Vvt-----l~~~~EL~~l~Vp~---L~~~~~~~Gi~~ 103 (168)
T PF05706_consen 57 RRDLQADLERLKDWGAQDVVT-----LLTDHELARLGVPD---LGEAAQARGIAW 103 (168)
T ss_dssp EB-HHHHHHHHHHTT--EEEE------S-HHHHHHTT-TT---HHHHHHHTT-EE
T ss_pred cchHHHHHHHHHHCCCCEEEE-----eCcHHHHHHcCCcc---HHHHHHHcCCEE
Confidence 568899999999999999865 67766567777765 558889999987
No 91
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=48.14 E-value=21 Score=36.90 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCcceEEec---ce-eeccccCCCccccchHHHHHHHHHHHcCCcEEEEE
Q 008086 116 AAGLKALKLLGVEGVELP---VW-WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSL 170 (578)
Q Consensus 116 ~~~L~~LK~~GV~GV~vd---VW-WGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvm 170 (578)
+..|+.||++|++.+... +- .-+-..-.|++..|..|.+.++.++++|+++.+-|
T Consensus 143 ~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~ 201 (340)
T TIGR03699 143 REVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATM 201 (340)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccee
Confidence 589999999999866310 00 11112223667799999999999999999975433
No 92
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=48.06 E-value=1.3e+02 Score=32.51 Aligned_cols=95 Identities=13% Similarity=0.181 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCcceEEecce-eeccccCC---Cccc----cchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhhH
Q 008086 116 AAGLKALKLLGVEGVELPVW-WGVAEKEA---MGKY----NWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVS 187 (578)
Q Consensus 116 ~~~L~~LK~~GV~GV~vdVW-WGivE~~~---p~~Y----dWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~ 187 (578)
+..+..+|++|+.-|++|+= |.+ +.-. |... -| ..+++++-+++.||+| ++..|.-.+..+-
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~~~p~~~~~~~~~-~ld~~I~~a~~~gi~V--~iD~H~~~~~~~~------ 145 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWAL-QATDGDNPYLIGLTQLK-ILDEAINWAKKLGIYV--LIDLHGYPGGNNG------ 145 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhh-hccCCCCCCeecchHHH-HHHHHHHHHHhcCeeE--EEEecccCCCCCC------
Confidence 78999999999999999987 554 4321 2222 24 7788899999999998 9999974321110
Q ss_pred hhhccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhch
Q 008086 188 QIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKP 242 (578)
Q Consensus 188 ~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~ 242 (578)
+...-+++..+. .-+-++.|.+.-+...++|++
T Consensus 146 -----~~~s~~~~~~~~-----------------~~~~~~~~~~~w~~ia~~f~~ 178 (407)
T COG2730 146 -----HEHSGYTSDYKE-----------------ENENVEATIDIWKFIANRFKN 178 (407)
T ss_pred -----cCcccccccccc-----------------cchhHHHHHHHHHHHHHhccC
Confidence 001111222111 334568899999999999999
No 93
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=47.71 E-value=25 Score=36.64 Aligned_cols=77 Identities=13% Similarity=0.075 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCcceEEecceeeccccCCCcccc---chHHHHHHHHHHHcC--CcEEEEEeeecCCCCCCCCChhhHhh
Q 008086 115 IAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYN---WSGYLAVAEMVEKIG--LKLHVSLCFHALKQPKIPLPDWVSQI 189 (578)
Q Consensus 115 ~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Yd---WsgY~~l~~mv~~~G--LKl~vvmsFH~cg~~~IpLP~WV~~~ 189 (578)
+..-++++.++|+++|.+.-=|+- -=+|..|+ +-+.+++++-+++.| .+ |+ |-||+.+-.+ .++.+
T Consensus 188 ~~~~~~~~~eaGad~i~i~d~~~~--~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~---il--h~cg~~~~~~-~~~~~- 258 (346)
T PRK00115 188 TIAYLNAQIEAGAQAVQIFDSWAG--ALSPADYREFVLPYMKRIVAELKREHPDVP---VI--LFGKGAGELL-EAMAE- 258 (346)
T ss_pred HHHHHHHHHHcCCCEEEEecCccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCCCC---EE--EEcCCcHHHH-HHHHh-
Confidence 344556677899999975432442 23455666 999999999999984 33 33 6677543223 34544
Q ss_pred hccCCCeeeecCC
Q 008086 190 GESQSSIFYTDQS 202 (578)
Q Consensus 190 g~~~pdI~ytD~~ 202 (578)
...+++-.|..
T Consensus 259 --~~~~~is~d~~ 269 (346)
T PRK00115 259 --TGADVVGLDWT 269 (346)
T ss_pred --cCCCEEeeCCC
Confidence 44467766654
No 94
>PLN02808 alpha-galactosidase
Probab=47.69 E-value=35 Score=37.38 Aligned_cols=58 Identities=29% Similarity=0.412 Sum_probs=44.2
Q ss_pred cHHHHHHHHHH-----HHHcCcceEEecceeeccccCCCccccc------hHHHHHHHHHHHcCCcEEE
Q 008086 111 HAKAIAAGLKA-----LKLLGVEGVELPVWWGVAEKEAMGKYNW------SGYLAVAEMVEKIGLKLHV 168 (578)
Q Consensus 111 ~~~a~~~~L~~-----LK~~GV~GV~vdVWWGivE~~~p~~YdW------sgY~~l~~mv~~~GLKl~v 168 (578)
+++.+.+...+ ||.+|.+-|.||-=|-..++...|..-. +|.+.|++.|++.|||.=.
T Consensus 47 ~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~GlkfGi 115 (386)
T PLN02808 47 NETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLKLGI 115 (386)
T ss_pred CHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCceEE
Confidence 45666666666 6999999999998887665554453222 6899999999999999843
No 95
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=47.41 E-value=5.7 Score=41.47 Aligned_cols=48 Identities=29% Similarity=0.633 Sum_probs=34.9
Q ss_pred cchHHHHHHhcc----CCCceeeEEEeecCcccCCCC-ChhhHHHHHHHhcCCC
Q 008086 501 PGGFEQMKKNLF----GENVVDLFTYQRMGAYFFSPE-HFPSFTKFVRNLNQLE 549 (578)
Q Consensus 501 ~~~~~qi~~~~~----~~~~~~~FTylRm~~~lf~~~-n~~~F~~FVr~m~~~~ 549 (578)
...|.++++.+. .... .-||+||||..++.|. +|..+.+|+|.|.+-=
T Consensus 76 ~~~~~~~~~~~~~~~~~f~~-~PfTiqRlcEl~~~P~~~y~~~~k~~~alek~~ 128 (288)
T PF09184_consen 76 PEDYEEMKERILELLDSFDE-PPFTIQRLCELLLDPRKHYKTLDKFLRALEKVV 128 (288)
T ss_pred hhhHHHHHHHHHHHHHhcCC-CChhHHHHHHHHhChhhccccHHHHHHHHheeE
Confidence 445566554321 2223 5599999999999985 7999999999998653
No 96
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=47.31 E-value=24 Score=37.15 Aligned_cols=115 Identities=7% Similarity=-0.004 Sum_probs=67.5
Q ss_pred HHHHHHc-CcceEEecceeec-----cccCCCccccchHHHHHHHHHHHcC-CcEEEEEeeecCCCCCCCCChhhHhhhc
Q 008086 119 LKALKLL-GVEGVELPVWWGV-----AEKEAMGKYNWSGYLAVAEMVEKIG-LKLHVSLCFHALKQPKIPLPDWVSQIGE 191 (578)
Q Consensus 119 L~~LK~~-GV~GV~vdVWWGi-----vE~~~p~~YdWsgY~~l~~mv~~~G-LKl~vvmsFH~cg~~~IpLP~WV~~~g~ 191 (578)
+++..++ |+++|.+--.|+- +.++-=.+|-|-+++++++-+++.| .+ ..+|.||..+--||... +
T Consensus 161 ~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~p----iilH~cG~~~~~l~~~~-e--- 232 (321)
T cd03309 161 YERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSAL----IVHHSCGAAASLVPSMA-E--- 232 (321)
T ss_pred HHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCc----eEEEeCCCcHHHHHHHH-H---
Confidence 3334444 9999998666764 4544344555999999999999984 32 45589985422233332 2
Q ss_pred cCCCeeeecCCCCcccc---------ccccccCcccccCCCChhHHHHHHHHHHHHhhch
Q 008086 192 SQSSIFYTDQSGQQFKG---------CLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKP 242 (578)
Q Consensus 192 ~~pdI~ytD~~G~r~~E---------~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~ 242 (578)
..-|++-.|..-.--.| +|.=.+|...++.+.| -+.=++..+...+.+.+
T Consensus 233 ~g~dvl~~d~~~~dl~eak~~~g~k~~l~GNlDp~~L~~~~t-~E~i~~~v~~~l~~~g~ 291 (321)
T cd03309 233 MGVDSWNVVMTANNTAELRRLLGDKVVLAGAIDDVALDTATW-PEEDARGVAKAAAECAP 291 (321)
T ss_pred cCCCEEEecCCCCCHHHHHHHhCCCeEEEcCCChHHhcCCCC-HHHHHHHHHHHHHHhCC
Confidence 33355555554311111 4444555444444444 35567777777777776
No 97
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=46.25 E-value=45 Score=34.45 Aligned_cols=86 Identities=14% Similarity=0.185 Sum_probs=56.3
Q ss_pred CceEEEeeecceeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEE
Q 008086 91 AVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSL 170 (578)
Q Consensus 91 ~vpvyVmLPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvm 170 (578)
+|+||-+-.|=-+. + ....+++-|+..|.+|++.|++. .|--...=.-..++++++++.|||+.+=+
T Consensus 54 ~V~v~~GGtl~E~~----~-~q~~~~~Yl~~~k~lGf~~IEiS--------~G~~~i~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 54 GIKVYPGGTLFEIA----H-SKGKFDEYLNECDELGFEAVEIS--------DGSMEISLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred CCeEeCCccHHHHH----H-HhhhHHHHHHHHHHcCCCEEEEc--------CCccCCCHHHHHHHHHHHHhCCCeEeccc
Confidence 78877764222111 1 22577789999999999999997 34445555677899999999999996544
Q ss_pred eeecCC-CCCCCCChhhHhh
Q 008086 171 CFHALK-QPKIPLPDWVSQI 189 (578)
Q Consensus 171 sFH~cg-~~~IpLP~WV~~~ 189 (578)
.-.--. ...+++..|+.++
T Consensus 121 G~K~~~~~~~~~~~~~i~~~ 140 (237)
T TIGR03849 121 GKKSPEKDSELTPDDRIKLI 140 (237)
T ss_pred cccCCcccccCCHHHHHHHH
Confidence 432110 1235556676553
No 98
>PLN02877 alpha-amylase/limit dextrinase
Probab=46.23 E-value=35 Score=41.45 Aligned_cols=53 Identities=26% Similarity=0.571 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCcceEEe-cce-eecc-ccCC-----------------------------CccccchH------------
Q 008086 116 AAGLKALKLLGVEGVEL-PVW-WGVA-EKEA-----------------------------MGKYNWSG------------ 151 (578)
Q Consensus 116 ~~~L~~LK~~GV~GV~v-dVW-WGiv-E~~~-----------------------------p~~YdWsg------------ 151 (578)
-.-|+.||++||..|++ ||. .+-| |... ...|||-+
T Consensus 376 i~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSY 455 (970)
T PLN02877 376 VLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSY 455 (970)
T ss_pred HHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcccccccCCCCCCCCCccccCCCCccc
Confidence 34688899999999986 776 4433 3111 13488865
Q ss_pred ------------HHHHHHHHHHcCCcEEE
Q 008086 152 ------------YLAVAEMVEKIGLKLHV 168 (578)
Q Consensus 152 ------------Y~~l~~mv~~~GLKl~v 168 (578)
++++++-+.++||+|..
T Consensus 456 atdP~g~~RI~efk~mV~~lH~~GI~VIm 484 (970)
T PLN02877 456 ASNPDGPCRIIEFRKMVQALNRIGLRVVL 484 (970)
T ss_pred ccCCCCcchHHHHHHHHHHHHHCCCEEEE
Confidence 88999999999999943
No 99
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=46.07 E-value=1e+02 Score=34.21 Aligned_cols=98 Identities=13% Similarity=0.215 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhhHhhhcc
Q 008086 113 KAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGES 192 (578)
Q Consensus 113 ~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~~~g~~ 192 (578)
..++..+++....||+.|.+-.--.-++ ...+.++.+++.|+++++.+|+=. ++ ..-|+.+.+..
T Consensus 96 dvv~~~v~~A~~~Gvd~irif~~lnd~~----------n~~~~v~~ak~~G~~v~~~i~~t~--~p-~~~~~~~~~~a-- 160 (448)
T PRK12331 96 DVVESFVQKSVENGIDIIRIFDALNDVR----------NLETAVKATKKAGGHAQVAISYTT--SP-VHTIDYFVKLA-- 160 (448)
T ss_pred hhHHHHHHHHHHCCCCEEEEEEecCcHH----------HHHHHHHHHHHcCCeEEEEEEeec--CC-CCCHHHHHHHH--
Confidence 3566788999999999988765432221 377799999999999998888722 12 22345555422
Q ss_pred CCCeeeecCCCCccccccccccCcccc---cCCCChhHHHHHHHHHHHHhh
Q 008086 193 QSSIFYTDQSGQQFKGCLSLAVDDLPV---LDGKTPIQVYQEFCESFKSSF 240 (578)
Q Consensus 193 ~pdI~ytD~~G~r~~E~LSl~vD~~pv---l~GRTpiq~Y~dfm~SF~~~f 240 (578)
++....|+|.+-+ .+--+|.++| +.++.+|+++
T Consensus 161 --------------~~l~~~Gad~I~i~Dt~G~l~P~~v~-~lv~alk~~~ 196 (448)
T PRK12331 161 --------------KEMQEMGADSICIKDMAGILTPYVAY-ELVKRIKEAV 196 (448)
T ss_pred --------------HHHHHcCCCEEEEcCCCCCCCHHHHH-HHHHHHHHhc
Confidence 2223344444433 1233576655 4778888776
No 100
>PRK15452 putative protease; Provisional
Probab=45.97 E-value=44 Score=37.00 Aligned_cols=39 Identities=8% Similarity=0.148 Sum_probs=29.4
Q ss_pred CCceEEEeeecceeeCCCccccHHHHHHHHHHHHHcCcceEEec
Q 008086 90 DAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELP 133 (578)
Q Consensus 90 ~~vpvyVmLPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vd 133 (578)
.+++|||.+| ++...+. -+.+...|+.|+.+|||||.|.
T Consensus 58 ~g~kvyvt~n--~i~~e~e---l~~~~~~l~~l~~~gvDgvIV~ 96 (443)
T PRK15452 58 LGKKFYVVVN--IAPHNAK---LKTFIRDLEPVIAMKPDALIMS 96 (443)
T ss_pred cCCEEEEEec--CcCCHHH---HHHHHHHHHHHHhCCCCEEEEc
Confidence 4799999988 3333323 3466778999999999999986
No 101
>PRK10658 putative alpha-glucosidase; Provisional
Probab=44.89 E-value=1.6e+02 Score=34.34 Aligned_cols=86 Identities=10% Similarity=0.248 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHcC--cceEEecceeeccccCCCccccch-----HHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCCh
Q 008086 112 AKAIAAGLKALKLLG--VEGVELPVWWGVAEKEAMGKYNWS-----GYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPD 184 (578)
Q Consensus 112 ~~a~~~~L~~LK~~G--V~GV~vdVWWGivE~~~p~~YdWs-----gY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~ 184 (578)
.+.+.+-++.+++.| ++.+.+|+.|.-- ..-+.|.|. .-+++++-+++.|+|+ ++..+ |.|..-.
T Consensus 282 e~~v~~~~~~~r~~~iP~d~i~lD~~w~~~--~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~--~~~i~----P~i~~~s 353 (665)
T PRK10658 282 EATVNSFIDGMAERDLPLHVFHFDCFWMKE--FQWCDFEWDPRTFPDPEGMLKRLKAKGLKI--CVWIN----PYIAQKS 353 (665)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEchhhhcC--CceeeeEEChhhCCCHHHHHHHHHHCCCEE--EEecc----CCcCCCc
Confidence 556677777888765 5899999988421 112345553 4578888889999998 44443 3333323
Q ss_pred hhHhhhccCCCeeeecCCCCcc
Q 008086 185 WVSQIGESQSSIFYTDQSGQQF 206 (578)
Q Consensus 185 WV~~~g~~~pdI~ytD~~G~r~ 206 (578)
-+-+++.++ +.|.++.+|...
T Consensus 354 ~~f~e~~~~-gy~vk~~~G~~~ 374 (665)
T PRK10658 354 PLFKEGKEK-GYLLKRPDGSVW 374 (665)
T ss_pred hHHHHHHHC-CeEEECCCCCEe
Confidence 344455443 789999998754
No 102
>PRK13753 dihydropteroate synthase; Provisional
Probab=44.29 E-value=2e+02 Score=30.34 Aligned_cols=163 Identities=13% Similarity=0.189 Sum_probs=0.0
Q ss_pred ceeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccc------cchHHHHHHHHHHHcCCcEEEEEeeec
Q 008086 101 DTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKY------NWSGYLAVAEMVEKIGLKLHVSLCFHA 174 (578)
Q Consensus 101 d~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Y------dWsgY~~l~~mv~~~GLKl~vvmsFH~ 174 (578)
|..++++.+.+.+...+..+.|-+.|++-|.|. .|...||-= +|.--..+++.+++.+..+ ++-+
T Consensus 13 DSFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIG-----geSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~I--SIDT-- 83 (279)
T PRK13753 13 DSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVG-----PAASHPDARPVSPADEIRRIAPLLDALSDQMHRV--SIDS-- 83 (279)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEEC-----CCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCcE--EEEC--
Q ss_pred CCCCCCCCChhhHhhhccCCCeeeecCCCCccccccccccC-ccccc----CCCC----------hhHHHHHHHHHHHHh
Q 008086 175 LKQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVD-DLPVL----DGKT----------PIQVYQEFCESFKSS 239 (578)
Q Consensus 175 cg~~~IpLP~WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD-~~pvl----~GRT----------piq~Y~dfm~SF~~~ 239 (578)
.+-..=.-..+.|.. +.-|-+|-.+++-+.+..+ +.|+. .|+. +-.+..|.+.-|.+.
T Consensus 84 ---~~~~va~~al~aGad----iINDVsg~~d~~~~~vva~~~~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~~~ 156 (279)
T PRK13753 84 ---FQPETQRYALKRGVG----YLNDIQGFPDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEAR 156 (279)
T ss_pred ---CCHHHHHHHHHcCCC----EEEeCCCCCchHHHHHHHHcCCCEEEEecCCCCCCCCcccCCCcchHHHHHHHHHHHH
Q ss_pred hchhcCCceEeecccccccccccccccccccccccccccccccccceeecccCCCccCCCCcccCCCCCcC---CCCccc
Q 008086 240 FKPFMGTTITVRSFDFKQCQVHTISDLHLLWDTDVVSTLQFDSLQGISMGLGPDGELRYPSHHRLAKSSKI---PGVGEF 316 (578)
Q Consensus 240 f~~~~g~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eI~VGLGP~GELRYPSy~~~~~~w~~---PGiGEF 316 (578)
.+......|. .|++ ||+| |
T Consensus 157 i~~~~~~Gi~---------------------------------------------------------~~~IilDPGiG-F 178 (279)
T PRK13753 157 VSALRRSGVA---------------------------------------------------------ADRLILDPGMG-F 178 (279)
T ss_pred HHHHHHcCCC---------------------------------------------------------hhhEEEeCCCC-C
Q ss_pred -----ccccHHHHHHHHHHHHHcCCC
Q 008086 317 -----QCCDRNMLNLLQQHAEANGNP 337 (578)
Q Consensus 317 -----QCYDk~~~~~l~~~a~a~gn~ 337 (578)
+-.+-.+++.|.....+-|-|
T Consensus 179 ~k~k~~~~n~~ll~~l~~l~~~~g~P 204 (279)
T PRK13753 179 FLSPAPETSLHVLSNLQKLKSALGLP 204 (279)
T ss_pred CCCCChHHHHHHHHhHHHHHHhCCCc
No 103
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=43.78 E-value=25 Score=36.71 Aligned_cols=57 Identities=16% Similarity=0.266 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCcceEEe---cce-eeccccCCCccccchHHHHHHHHHHHcCCcEEEEEee
Q 008086 116 AAGLKALKLLGVEGVEL---PVW-WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (578)
Q Consensus 116 ~~~L~~LK~~GV~GV~v---dVW-WGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsF 172 (578)
...|++||++|++.+.. ... -.+..+-.|++-.+..+.+.+++++++|+++-..|=+
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~ 201 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMY 201 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEE
Confidence 57899999999998751 111 1122223466677778899999999999998655544
No 104
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=43.63 E-value=24 Score=25.82 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=13.5
Q ss_pred HHHHHHHHcCcceEEec
Q 008086 117 AGLKALKLLGVEGVELP 133 (578)
Q Consensus 117 ~~L~~LK~~GV~GV~vd 133 (578)
+..++|-.+||||||.|
T Consensus 11 ~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 11 ASWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHcCCCEeeCC
Confidence 46688889999999987
No 105
>PRK07360 FO synthase subunit 2; Reviewed
Probab=43.59 E-value=27 Score=37.16 Aligned_cols=52 Identities=25% Similarity=0.381 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCcceEEecceeec-cc--------cCCCccccchHHHHHHHHHHHcCCcEEEEEee
Q 008086 116 AAGLKALKLLGVEGVELPVWWGV-AE--------KEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (578)
Q Consensus 116 ~~~L~~LK~~GV~GV~vdVWWGi-vE--------~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsF 172 (578)
+..|++||++|++.+. +. .| .-.|++-++..|.+..+++++.|+++-.-|=|
T Consensus 163 ~e~l~~LkeAGld~~~-----~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~ 223 (371)
T PRK07360 163 EEVLKALKDAGLDSMP-----GTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMY 223 (371)
T ss_pred HHHHHHHHHcCCCcCC-----CcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEe
Confidence 4689999999999994 21 11 12477888888999999999999999554444
No 106
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=42.74 E-value=48 Score=33.64 Aligned_cols=96 Identities=17% Similarity=0.256 Sum_probs=53.7
Q ss_pred CCCceEEEeeecceeeCCCccccHHHHHHHHHHHHHcCcceEEe--cceeeccccCCCccccchHHHHHHHHHHHcCCcE
Q 008086 89 LDAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVEL--PVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (578)
Q Consensus 89 ~~~vpvyVmLPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~v--dVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl 166 (578)
.+.+||+++. . .+.. .+++ +..+..+++|+|+|++ |.|+..-+ .-=..+|+++++ +.++.|
T Consensus 65 ~~~~~vi~gv-----~-~~s~--~~~i-~~a~~a~~~Gad~v~v~pP~y~~~~~-----~~i~~~~~~i~~---~~~~pi 127 (285)
T TIGR00674 65 NGRVPVIAGT-----G-SNAT--EEAI-SLTKFAEDVGADGFLVVTPYYNKPTQ-----EGLYQHFKAIAE---EVDLPI 127 (285)
T ss_pred CCCCeEEEeC-----C-CccH--HHHH-HHHHHHHHcCCCEEEEcCCcCCCCCH-----HHHHHHHHHHHh---cCCCCE
Confidence 3468999874 2 1112 2333 3667789999999998 44543322 112345555555 446654
Q ss_pred EEEEeeecCCCCCCCCChhhHhhhccCCCe-eeecCCCC
Q 008086 167 HVSLCFHALKQPKIPLPDWVSQIGESQSSI-FYTDQSGQ 204 (578)
Q Consensus 167 ~vvmsFH~cg~~~IpLP~WV~~~g~~~pdI-~ytD~~G~ 204 (578)
+=+|.-....++|+.-+.+.-.++|.| .++|-+|.
T Consensus 128 ---~lYn~P~~tg~~l~~~~l~~L~~~~~v~giK~s~~d 163 (285)
T TIGR00674 128 ---ILYNVPSRTGVSLYPETVKRLAEEPNIVAIKEATGN 163 (285)
T ss_pred ---EEEECcHHhcCCCCHHHHHHHHcCCCEEEEEeCCCC
Confidence 444432223455666666544467775 56677763
No 107
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=42.64 E-value=1.1e+02 Score=33.14 Aligned_cols=76 Identities=17% Similarity=0.124 Sum_probs=53.6
Q ss_pred CCCceEEEeeecceeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEE
Q 008086 89 LDAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHV 168 (578)
Q Consensus 89 ~~~vpvyVmLPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~v 168 (578)
.++-|+++-.| +.+..++.+...-+.||.+||..+.-..|==..-+.+-.-..+.+|..+.+.+++.||.+
T Consensus 115 g~~~~~~iaGp-------c~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~-- 185 (360)
T PRK12595 115 GDGNQSFIFGP-------CSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAV-- 185 (360)
T ss_pred cCCCeeeEEec-------ccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCE--
Confidence 33445666666 677888888889999999999988866553111111223345789999999999999998
Q ss_pred EEeee
Q 008086 169 SLCFH 173 (578)
Q Consensus 169 vmsFH 173 (578)
+-..|
T Consensus 186 ~t~v~ 190 (360)
T PRK12595 186 ISEIV 190 (360)
T ss_pred EEeeC
Confidence 44444
No 108
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=42.47 E-value=99 Score=31.63 Aligned_cols=114 Identities=16% Similarity=0.140 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCcceEEecceee-ccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhhHhhhccCC
Q 008086 116 AAGLKALKLLGVEGVELPVWWG-VAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQS 194 (578)
Q Consensus 116 ~~~L~~LK~~GV~GV~vdVWWG-ivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~~~g~~~p 194 (578)
..-++++.++|+++|.+.-=++ ++-++-=.+|-+-+++++++.+++.|.+ ..-+|-||..+.-+|.. .+ ...
T Consensus 185 ~~~~~~~~~~G~d~i~~~d~~~~~isp~~f~e~~~P~~k~i~~~i~~~g~~---~~~lH~cG~~~~~~~~l-~~---~g~ 257 (343)
T PF01208_consen 185 IEYAKAQIEAGADGIFIFDSSGSLISPEMFEEFILPYLKKIIDAIKEAGKD---PVILHICGNTTPILDDL-AD---LGA 257 (343)
T ss_dssp HHHHHHHHHTT-SEEEEEETTGGGS-HHHHHHHTHHHHHHHHHHHHHHETE----EEEEETTHG-GGHHHH-HT---SS-
T ss_pred HHHHHHHHHhCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC---ceEEEECCchHHHHHHH-Hh---cCC
Confidence 3456778899999997665222 2222223477899999999999999993 33578998643333333 23 334
Q ss_pred CeeeecCCCCc--------cccccccccCcccccCCCChhHHHHHHHHHHH
Q 008086 195 SIFYTDQSGQQ--------FKGCLSLAVDDLPVLDGKTPIQVYQEFCESFK 237 (578)
Q Consensus 195 dI~ytD~~G~r--------~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~ 237 (578)
|++-.|..=.- .+=||-=++|..-+|. -||-+++++--+-..
T Consensus 258 d~~~~~~~~~~~~~~~~~~~~~~l~Gni~~~~~l~-gt~eei~~~v~~~i~ 307 (343)
T PF01208_consen 258 DVLSVDEKVDLAEAKRKLGDKIVLMGNIDPVSLLF-GTPEEIEEEVKRLIE 307 (343)
T ss_dssp SEEEE-TTS-HHHHHHHHTTSSEEEEEB-G-GGGG-S-HHHHHHHHHHHHH
T ss_pred CEEEEcCCCCHHHHHHHhCCCeEEECCCCcccccc-CCHHHHHHHHHHHHH
Confidence 55555433211 1223333444433455 666666665555554
No 109
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=42.02 E-value=3e+02 Score=26.85 Aligned_cols=102 Identities=19% Similarity=0.227 Sum_probs=62.8
Q ss_pred HHHHHHHHHcCcceEEecceeeccccC------CCccccchHHHHHHHHHHHcCCcEEEEE-eeecCCCCCCCCChhhHh
Q 008086 116 AAGLKALKLLGVEGVELPVWWGVAEKE------AMGKYNWSGYLAVAEMVEKIGLKLHVSL-CFHALKQPKIPLPDWVSQ 188 (578)
Q Consensus 116 ~~~L~~LK~~GV~GV~vdVWWGivE~~------~p~~YdWsgY~~l~~mv~~~GLKl~vvm-sFH~cg~~~IpLP~WV~~ 188 (578)
...++.++.+|++.|.+..=-. +.. ....-++....+.++.+++.|+++.+.+ ....| +.-|..+.+
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s--~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~----~~~~~~l~~ 150 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSAS--ETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC----KTDPEYVLE 150 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC----CCCHHHHHH
Confidence 4689999999999999886422 110 1122367778899999999999998888 35443 334444444
Q ss_pred hh----ccCCC-eeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhch
Q 008086 189 IG----ESQSS-IFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKP 242 (578)
Q Consensus 189 ~g----~~~pd-I~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~ 242 (578)
.. +.-++ |.+.|-.| --|| +.+.++++.+++.+.+
T Consensus 151 ~~~~~~~~g~~~i~l~Dt~G------------------~~~P-~~v~~li~~l~~~~~~ 190 (265)
T cd03174 151 VAKALEEAGADEISLKDTVG------------------LATP-EEVAELVKALREALPD 190 (265)
T ss_pred HHHHHHHcCCCEEEechhcC------------------CcCH-HHHHHHHHHHHHhCCC
Confidence 22 22233 33333322 2345 4566777777777764
No 110
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=40.30 E-value=84 Score=32.07 Aligned_cols=47 Identities=21% Similarity=0.173 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEe
Q 008086 113 KAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLC 171 (578)
Q Consensus 113 ~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvms 171 (578)
-.+++-++.++++||+||-++.- | ...-.++.+.++++||++..+++
T Consensus 102 ~G~e~f~~~~~~aGvdgviipDl--------p----~ee~~~~~~~~~~~gl~~i~lv~ 148 (256)
T TIGR00262 102 KGVEEFYAKCKEVGVDGVLVADL--------P----LEESGDLVEAAKKHGVKPIFLVA 148 (256)
T ss_pred hhHHHHHHHHHHcCCCEEEECCC--------C----hHHHHHHHHHHHHCCCcEEEEEC
Confidence 35677899999999999999832 2 13456899999999999954444
No 111
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=40.19 E-value=1.5e+02 Score=29.82 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=43.2
Q ss_pred CceEEEeeecceeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEE
Q 008086 91 AVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSL 170 (578)
Q Consensus 91 ~vpvyVmLPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvm 170 (578)
.+|+.+|.=++.+- ...+++-++.++++|++||.++-- | + ....++++.++++|++..+.+
T Consensus 76 ~~pv~lm~y~n~~~-------~~G~~~fi~~~~~aG~~giiipDl--------~--~--ee~~~~~~~~~~~g~~~i~~i 136 (242)
T cd04724 76 TIPIVLMGYYNPIL-------QYGLERFLRDAKEAGVDGLIIPDL--------P--P--EEAEEFREAAKEYGLDLIFLV 136 (242)
T ss_pred CCCEEEEEecCHHH-------HhCHHHHHHHHHHCCCcEEEECCC--------C--H--HHHHHHHHHHHHcCCcEEEEe
Confidence 56777774332211 112457799999999999999621 1 1 256689999999999996666
Q ss_pred ee
Q 008086 171 CF 172 (578)
Q Consensus 171 sF 172 (578)
+-
T Consensus 137 ~P 138 (242)
T cd04724 137 AP 138 (242)
T ss_pred CC
Confidence 53
No 112
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=40.19 E-value=28 Score=38.32 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=36.4
Q ss_pred HHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEee
Q 008086 118 GLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (578)
Q Consensus 118 ~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsF 172 (578)
.|..+|++||+||....-- + .....+.-..-.++-++|+++||++-||=|.
T Consensus 15 ~l~~irQ~G~~giV~al~~-~---p~gevW~~~~i~~~k~~ie~~GL~~~vvEs~ 65 (394)
T TIGR00695 15 SLEDVRQAGATGIVTALHH-I---PNGEVWEKEEIRKRKEYIESAGLHWSVVESV 65 (394)
T ss_pred hHHHHhhcCCcceeecCCC-C---CCCCCCCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 5788899999999955421 1 1112344455678899999999999998666
No 113
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=40.13 E-value=56 Score=34.07 Aligned_cols=75 Identities=20% Similarity=0.294 Sum_probs=54.8
Q ss_pred CCceEEEeeec---ceeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcE
Q 008086 90 DAVRLFVGLPL---DTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (578)
Q Consensus 90 ~~vpvyVmLPL---d~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl 166 (578)
..+|||+|.-= |-|-+... -+.+..+.++.|++|+.||.+.+- ..+|+.|=.-..+|.+.+. ||.+
T Consensus 50 ~~ipv~~MIRPRgGdFvY~~~E---~~iM~~DI~~~~~lG~~GVV~G~l------t~dg~iD~~~le~Li~aA~--gL~v 118 (241)
T COG3142 50 SKIPVYVMIRPRGGDFVYSDDE---LEIMLEDIRLARELGVQGVVLGAL------TADGNIDMPRLEKLIEAAG--GLGV 118 (241)
T ss_pred cCCceEEEEecCCCCcccChHH---HHHHHHHHHHHHHcCCCcEEEeee------cCCCccCHHHHHHHHHHcc--CCce
Confidence 68999999732 22222222 357889999999999999998753 4589999999999998877 6666
Q ss_pred EEEEeeecC
Q 008086 167 HVSLCFHAL 175 (578)
Q Consensus 167 ~vvmsFH~c 175 (578)
--=+.|-.|
T Consensus 119 TFHrAFD~~ 127 (241)
T COG3142 119 TFHRAFDEC 127 (241)
T ss_pred eeehhhhhc
Confidence 334555555
No 114
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=40.03 E-value=38 Score=34.83 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCcceEE-ec--ce-eeccccCCCccccchHHHHHHHHHHHcCCcEEEEEe
Q 008086 116 AAGLKALKLLGVEGVE-LP--VW-WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLC 171 (578)
Q Consensus 116 ~~~L~~LK~~GV~GV~-vd--VW-WGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvms 171 (578)
+..|++||++|++.+. +. .. -.+...-.|++..|..+.+.++.+++.|+++-.-|=
T Consensus 107 ~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~i 166 (309)
T TIGR00423 107 EEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATMM 166 (309)
T ss_pred HHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEE
Confidence 5789999999998773 11 11 111122237788999999999999999999854443
No 115
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=39.33 E-value=50 Score=33.39 Aligned_cols=49 Identities=10% Similarity=0.236 Sum_probs=34.2
Q ss_pred ccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEee
Q 008086 110 NHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (578)
Q Consensus 110 ~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsF 172 (578)
...++++++|+.||++|+..|.+- ...+. .++.++|.+.||-|..=+..
T Consensus 33 ~~~~~~~~d~~l~k~~G~N~iR~~---h~p~~-----------~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 33 MPDEAMERDLELMKEMGFNAIRTH---HYPPS-----------PRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEET---TS--S-----------HHHHHHHHHHT-EEEEE-S-
T ss_pred CCHHHHHHHHHHHHhcCcceEEcc---cccCc-----------HHHHHHHhhcCCEEEEeccc
Confidence 356899999999999999999983 22332 37889999999999766655
No 116
>PLN02692 alpha-galactosidase
Probab=39.27 E-value=54 Score=36.32 Aligned_cols=56 Identities=32% Similarity=0.405 Sum_probs=40.0
Q ss_pred cHHHHHHHHHH-----HHHcCcceEEecceeeccccCCCccccc------hHHHHHHHHHHHcCCcE
Q 008086 111 HAKAIAAGLKA-----LKLLGVEGVELPVWWGVAEKEAMGKYNW------SGYLAVAEMVEKIGLKL 166 (578)
Q Consensus 111 ~~~a~~~~L~~-----LK~~GV~GV~vdVWWGivE~~~p~~YdW------sgY~~l~~mv~~~GLKl 166 (578)
+++.+.+...+ ||.+|.+-|.||-=|-..++..-|..-. +|.+.|++.|++.|||.
T Consensus 71 ~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLKf 137 (412)
T PLN02692 71 DEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHSKGLKL 137 (412)
T ss_pred CHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHHCCCce
Confidence 45555555554 4888999999998664444433343333 68999999999999998
No 117
>PRK07094 biotin synthase; Provisional
Probab=39.19 E-value=54 Score=33.51 Aligned_cols=55 Identities=15% Similarity=0.092 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCcceEEecce---eeccccCCCccccchHHHHHHHHHHHcCCcEEEEEe
Q 008086 116 AAGLKALKLLGVEGVELPVW---WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLC 171 (578)
Q Consensus 116 ~~~L~~LK~~GV~GV~vdVW---WGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvms 171 (578)
+..|+.||++|++.|.+.+= -.+.+.-.+ ...++.+.+.++.++++|+++..-+-
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~-~~s~~~~~~~i~~l~~~Gi~v~~~~i 186 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHP-GMSFENRIACLKDLKELGYEVGSGFM 186 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCeecceEE
Confidence 46889999999999987541 112222223 57899999999999999998644333
No 118
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=39.02 E-value=94 Score=31.39 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=46.0
Q ss_pred cccHHHHHHHHHHHHHcCcceEEecceeeccccC-CC--ccccchHHHHHHHHHHHcCCcEEEEEeeecCC
Q 008086 109 VNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKE-AM--GKYNWSGYLAVAEMVEKIGLKLHVSLCFHALK 176 (578)
Q Consensus 109 ~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~-~p--~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg 176 (578)
++.++.+.+.++.+++.|++.|-+-.=++..-+. .+ ..++-..+.++++.+++.|+++ ..|..+
T Consensus 116 ~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v----~~H~~~ 182 (342)
T cd01299 116 VDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYV----AAHAYG 182 (342)
T ss_pred ecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEE----EEEeCC
Confidence 5667888899999999999999765422221111 11 2567788999999999999876 467654
No 119
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=38.93 E-value=3.4e+02 Score=28.44 Aligned_cols=89 Identities=11% Similarity=0.158 Sum_probs=55.4
Q ss_pred ccccHHHHHHHHHHHHHcC--cceEEecceeeccccCCCccccchH-----HHHHHHHHHHcCCcEEEEEeeecCCCCCC
Q 008086 108 TVNHAKAIAAGLKALKLLG--VEGVELPVWWGVAEKEAMGKYNWSG-----YLAVAEMVEKIGLKLHVSLCFHALKQPKI 180 (578)
Q Consensus 108 ~~~~~~a~~~~L~~LK~~G--V~GV~vdVWWGivE~~~p~~YdWsg-----Y~~l~~mv~~~GLKl~vvmsFH~cg~~~I 180 (578)
..+..+.+.+-++.+++.| +|++.+|.=|.. +-+.|+|.- -+++++-.++.|+|+.+++.=|.+-.+
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~-- 92 (339)
T cd06604 19 SYYPEEEVREIADEFRERDIPCDAIYLDIDYMD----GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVDP-- 92 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECchhhC----CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCC--
Confidence 3456677888888888876 588999865541 234455543 578999999999999544432222111
Q ss_pred CCChhhHhhhccCCCeeeecCCCCc
Q 008086 181 PLPDWVSQIGESQSSIFYTDQSGQQ 205 (578)
Q Consensus 181 pLP~WV~~~g~~~pdI~ytD~~G~r 205 (578)
+-| +-+++.+ .+.|.++.+|..
T Consensus 93 ~~~--~~~e~~~-~g~~v~~~~g~~ 114 (339)
T cd06604 93 GYD--VYEEGLE-NDYFVKDPDGEL 114 (339)
T ss_pred CCh--HHHHHHH-CCeEEECCCCCE
Confidence 112 2233333 478899988853
No 120
>PRK03906 mannonate dehydratase; Provisional
Probab=38.88 E-value=44 Score=36.45 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=37.1
Q ss_pred HHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEee
Q 008086 118 GLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (578)
Q Consensus 118 ~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsF 172 (578)
.|..+|++||+||....- .-.....+.-..-.++-++|+++||++-||=|.
T Consensus 15 ~l~~~rQ~G~~~iv~~l~----~~~~g~~W~~~~i~~~~~~ie~~Gl~~~vvEs~ 65 (385)
T PRK03906 15 TLEDIRQPGATGIVTALH----DIPVGEVWPVEEILARKAEIEAAGLEWSVVESV 65 (385)
T ss_pred hHHHHhcCCCCceeecCC----CCCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 578899999999996531 111123445556778999999999999998665
No 121
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=38.87 E-value=67 Score=35.18 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCcceEEecceeeccccCCCccc---c-------------------chHHHHHHHHHHHcCCcEEEE
Q 008086 112 AKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKY---N-------------------WSGYLAVAEMVEKIGLKLHVS 169 (578)
Q Consensus 112 ~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Y---d-------------------WsgY~~l~~mv~~~GLKl~vv 169 (578)
.+.|...|..||.+||++|-+.-.+--........| | ...+++|++.+++.|+||.+=
T Consensus 21 ~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D 100 (479)
T PRK09441 21 WNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYAD 100 (479)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence 357888999999999999988654322211111222 2 234889999999999999777
Q ss_pred EeeecCC
Q 008086 170 LCFHALK 176 (578)
Q Consensus 170 msFH~cg 176 (578)
+-|--++
T Consensus 101 ~V~NH~~ 107 (479)
T PRK09441 101 VVLNHKA 107 (479)
T ss_pred ECccccc
Confidence 7664443
No 122
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=38.68 E-value=1.4e+02 Score=33.49 Aligned_cols=65 Identities=15% Similarity=0.320 Sum_probs=46.7
Q ss_pred cccHHHHHHHHHHHHHcCcceEEecceeeccccCC-Ccccc-------------chHHHHHHHHHHHcCCcEEEEEeeec
Q 008086 109 VNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEA-MGKYN-------------WSGYLAVAEMVEKIGLKLHVSLCFHA 174 (578)
Q Consensus 109 ~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~-p~~Yd-------------WsgY~~l~~mv~~~GLKl~vvmsFH~ 174 (578)
.-+-+.|.+.|..||++||++|-+.=.. |... ...|+ ...+++|++.+++.|+||..=+-+.-
T Consensus 24 ~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~---~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH 100 (539)
T TIGR02456 24 IGDFPGLTSKLDYLKWLGVDALWLLPFF---QSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNH 100 (539)
T ss_pred ccCHHHHHHhHHHHHHCCCCEEEECCCc---CCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 4455688899999999999999775432 2211 22333 46788999999999999977666654
Q ss_pred CC
Q 008086 175 LK 176 (578)
Q Consensus 175 cg 176 (578)
++
T Consensus 101 ~s 102 (539)
T TIGR02456 101 TS 102 (539)
T ss_pred CC
Confidence 43
No 123
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=38.45 E-value=1.8e+02 Score=29.25 Aligned_cols=95 Identities=22% Similarity=0.375 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHcC--cceEEecceeeccccCCCccccchHHHHHHHHHHHc---CCcEEEEEeeecCCCCCCCCChhhH
Q 008086 113 KAIAAGLKALKLLG--VEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKI---GLKLHVSLCFHALKQPKIPLPDWVS 187 (578)
Q Consensus 113 ~a~~~~L~~LK~~G--V~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~---GLKl~vvmsFH~cg~~~IpLP~WV~ 187 (578)
..|...|.+.+.+| |.||+||.= -....-..|.++.+-.|+. ++++ ++.- ||+|..
T Consensus 27 ~~i~~~l~~W~~~G~~v~giQIDfD--------a~t~~L~~Y~~fL~~LR~~LP~~~~L--SIT~---------L~dW~~ 87 (181)
T PF11340_consen 27 ARILQLLQRWQAAGNNVAGIQIDFD--------AATSRLPAYAQFLQQLRQRLPPDYRL--SITA---------LPDWLS 87 (181)
T ss_pred HHHHHHHHHHHHcCCCceEEEEecC--------ccccchHHHHHHHHHHHHhCCCCceE--eeEE---------ehhhhc
Confidence 35556666777777 689999952 3445567888888888864 4444 3333 999985
Q ss_pred hhhccCCCeeeecCCCCccccccccc--cCcccc--cCCCChhHHHHHHHHHHHHhhchh
Q 008086 188 QIGESQSSIFYTDQSGQQFKGCLSLA--VDDLPV--LDGKTPIQVYQEFCESFKSSFKPF 243 (578)
Q Consensus 188 ~~g~~~pdI~ytD~~G~r~~E~LSl~--vD~~pv--l~GRTpiq~Y~dfm~SF~~~f~~~ 243 (578)
. |+ - .=.|. ||++.+ +.||+-++-|.++..+...-=.+|
T Consensus 88 ~-----~~-~-----------L~~L~~~VDE~VlQ~yqGl~d~~~~~~yl~~l~~l~~PF 130 (181)
T PF11340_consen 88 S-----PD-W-----------LNALPGVVDELVLQVYQGLFDPPNYARYLPRLARLTLPF 130 (181)
T ss_pred C-----ch-h-----------hhhHhhcCCeeEEEeecCCCCHHHHHHHHHHHhcCCCCe
Confidence 4 22 0 11233 677653 799999999999998876544444
No 124
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=38.34 E-value=16 Score=31.37 Aligned_cols=51 Identities=18% Similarity=0.570 Sum_probs=33.2
Q ss_pred CChhhHhhh------ccCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhchhcCC----ceEee
Q 008086 182 LPDWVSQIG------ESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT----TITVR 251 (578)
Q Consensus 182 LP~WV~~~g------~~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~g~----~I~~~ 251 (578)
+|.|..+.. ...-|++|++..|.+. |+ +.+...|++. .+++.
T Consensus 8 p~GW~r~~~~R~~gs~~k~DvyY~sP~Gkk~----------------RS------------~~ev~~yL~~~~~~~~~~~ 59 (77)
T cd01396 8 PPGWKRELVPRKSGSAGKFDVYYISPTGKKF----------------RS------------KVELARYLEKNGPTSLDLS 59 (77)
T ss_pred CCCCEEEEEEecCCCCCcceEEEECCCCCEE----------------EC------------HHHHHHHHHhCCCCCCcHh
Confidence 455977632 3456899999999775 22 2334445543 68888
Q ss_pred ccccccccc
Q 008086 252 SFDFKQCQV 260 (578)
Q Consensus 252 ~~~~~~~~~ 260 (578)
+|||.....
T Consensus 60 ~FdF~~~k~ 68 (77)
T cd01396 60 DFDFTVPKK 68 (77)
T ss_pred HcccCCCcc
Confidence 999987643
No 125
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=37.91 E-value=72 Score=32.82 Aligned_cols=65 Identities=9% Similarity=-0.084 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHcCcceEEecce-eeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeecCCCC
Q 008086 112 AKAIAAGLKALKLLGVEGVELPVW-WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQP 178 (578)
Q Consensus 112 ~~a~~~~L~~LK~~GV~GV~vdVW-WGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~ 178 (578)
++++.+.+++|..+|++.|.+|.= |+..-...+....-....++.+.+.+.+....+ ..|-|.+.
T Consensus 154 a~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v--~lHiC~G~ 219 (332)
T cd03311 154 ALALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQI--HTHICYGN 219 (332)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEE--EEEEECCC
Confidence 567778889999999999999984 654332112234555666777777664555533 46888543
No 126
>PLN02229 alpha-galactosidase
Probab=37.36 E-value=55 Score=36.45 Aligned_cols=63 Identities=25% Similarity=0.328 Sum_probs=44.9
Q ss_pred eCCCccc---cHHHHHHHHHH-----HHHcCcceEEecceeeccccCC-------CccccchHHHHHHHHHHHcCCcEE
Q 008086 104 SDANTVN---HAKAIAAGLKA-----LKLLGVEGVELPVWWGVAEKEA-------MGKYNWSGYLAVAEMVEKIGLKLH 167 (578)
Q Consensus 104 ~~~n~~~---~~~a~~~~L~~-----LK~~GV~GV~vdVWWGivE~~~-------p~~YdWsgY~~l~~mv~~~GLKl~ 167 (578)
+.+|.+. +++.+.+...+ ||.+|.+-|.||-=|...++.. |.+|- +|.+.|++.+++.|||+=
T Consensus 68 nSWn~~~~~i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP-~G~k~ladyiH~~GlKfG 145 (427)
T PLN02229 68 NSWNFFACNINETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFP-SGIKLLADYVHSKGLKLG 145 (427)
T ss_pred EchhhhCcccCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcC-CcHHHHHHHHHHCCCceE
Confidence 3454443 46677777776 5999999999998664333332 33443 589999999999999983
No 127
>PLN00196 alpha-amylase; Provisional
Probab=36.80 E-value=84 Score=34.58 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHcCcceEEecceeeccccCCCcccc------c--------hHHHHHHHHHHHcCCcEEEEEeeec
Q 008086 112 AKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYN------W--------SGYLAVAEMVEKIGLKLHVSLCFHA 174 (578)
Q Consensus 112 ~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Yd------W--------sgY~~l~~mv~~~GLKl~vvmsFH~ 174 (578)
-+.|...|..||++||+.|-++-= .|..+...|+ - ..++++++.+++.|+||.+=+-|--
T Consensus 43 ~~~i~~kldyL~~LGvtaIWL~P~---~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH 116 (428)
T PLN00196 43 YNFLMGKVDDIAAAGITHVWLPPP---SHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINH 116 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCC---CCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccC
Confidence 457889999999999999988742 2332233332 2 3589999999999999966555533
No 128
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=36.71 E-value=51 Score=33.20 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=36.9
Q ss_pred hHHHHHHHHhCCceEEeeccccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccC
Q 008086 438 YAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSS 496 (578)
Q Consensus 438 Y~~Ia~mfak~~~~l~ftc~Em~d~eqp~~~~s~Pe~Lv~QV~~aa~~~Gv~v~GENAl 496 (578)
...+++.|-+.|.+.+++|++-..-...---..--++++..+...+++.||..+|||.-
T Consensus 123 ~~~ll~e~i~~Gf~aiIv~V~~~~L~~~~LGr~l~~e~i~~L~~~~~~~gvdp~GE~GE 181 (218)
T PF01902_consen 123 REELLREFIESGFEAIIVKVDADGLDESFLGRELDRELIEELPELNKKYGVDPCGEGGE 181 (218)
T ss_dssp HHHHHHHHHHTT-EEEEEEEESTT--GGGTT-B--HHHHHHHHHHHHHH---TT-TTTT
T ss_pred HHHHHHHHHHCCCeEEEEEEeccCCChHHCCCCccHHHHHHHHHHHhhcCccccCCCee
Confidence 56777777788999999998754332110112234689999999999999999999964
No 129
>PRK08508 biotin synthase; Provisional
Probab=36.56 E-value=50 Score=33.70 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCcceEEecceeeccccCCC-------ccccchHHHHHHHHHHHcCCcEEE
Q 008086 116 AAGLKALKLLGVEGVELPVWWGVAEKEAM-------GKYNWSGYLAVAEMVEKIGLKLHV 168 (578)
Q Consensus 116 ~~~L~~LK~~GV~GV~vdVWWGivE~~~p-------~~YdWsgY~~l~~mv~~~GLKl~v 168 (578)
...|++||++|++.+.++ +|.. + ...+|....+.++.++++|+++-.
T Consensus 102 ~e~l~~Lk~aGld~~~~~-----lEt~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~s 155 (279)
T PRK08508 102 VEQLKELKKAGIFSYNHN-----LETS-KEFFPKICTTHTWEERFQTCENAKEAGLGLCS 155 (279)
T ss_pred HHHHHHHHHcCCCEEccc-----ccch-HHHhcCCCCCCCHHHHHHHHHHHHHcCCeecc
Confidence 479999999999999885 3331 2 125788888899999999998733
No 130
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=36.43 E-value=1.4e+02 Score=30.84 Aligned_cols=67 Identities=15% Similarity=0.115 Sum_probs=48.2
Q ss_pred eeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCcc---ccchHHHHHHHHHHHcCCcEEEEEeee
Q 008086 102 TVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGK---YNWSGYLAVAEMVEKIGLKLHVSLCFH 173 (578)
Q Consensus 102 ~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~---YdWsgY~~l~~mv~~~GLKl~vvmsFH 173 (578)
+|.-=+.+.+.+++..--++||++|+..+....|= =+..|.. +-..+|+.+.+.+++.||.+ +-.+|
T Consensus 30 ~iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~k---pRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~--~te~~ 99 (266)
T PRK13398 30 IIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFK---PRTSPYSFQGLGEEGLKILKEVGDKYNLPV--VTEVM 99 (266)
T ss_pred EEEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeec---CCCCCCccCCcHHHHHHHHHHHHHHcCCCE--EEeeC
Confidence 34444667888888889999999999988887662 1111111 12678999999999999998 55554
No 131
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=36.39 E-value=1.4e+02 Score=30.40 Aligned_cols=94 Identities=19% Similarity=0.297 Sum_probs=50.0
Q ss_pred CCCceEEEeeecceeeCCCccccHHHHHHHHHHHHHcCcceEEe--cceeeccccCCCccccchHHHHHHHHHHHcCCcE
Q 008086 89 LDAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVEL--PVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (578)
Q Consensus 89 ~~~vpvyVmLPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~v--dVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl 166 (578)
.+.+||+++. ...+ . .++ .+..+..+++|+++|++ |.|...-+ .+ =..+|+++++ ..++.+
T Consensus 68 ~~~~~vi~gv-----~~~~-~--~~~-i~~a~~a~~~G~d~v~~~pP~~~~~~~---~~--i~~~~~~ia~---~~~~pv 130 (292)
T PRK03170 68 NGRVPVIAGT-----GSNS-T--AEA-IELTKFAEKAGADGALVVTPYYNKPTQ---EG--LYQHFKAIAE---ATDLPI 130 (292)
T ss_pred CCCCcEEeec-----CCch-H--HHH-HHHHHHHHHcCCCEEEECCCcCCCCCH---HH--HHHHHHHHHh---cCCCCE
Confidence 3468888664 2111 1 233 34778889999999998 33332211 11 2345665554 445655
Q ss_pred EEEEeeecCC--CCCCCCChhhHhhhccCCCe-eeecCCCC
Q 008086 167 HVSLCFHALK--QPKIPLPDWVSQIGESQSSI-FYTDQSGQ 204 (578)
Q Consensus 167 ~vvmsFH~cg--~~~IpLP~WV~~~g~~~pdI-~ytD~~G~ 204 (578)
+=+|.-+ +..++ |+=+.+. .++|.| .++|-+|.
T Consensus 131 ---~lYn~P~~~g~~l~-~~~~~~L-~~~p~v~giK~s~~d 166 (292)
T PRK03170 131 ---ILYNVPGRTGVDIL-PETVARL-AEHPNIVGIKEATGD 166 (292)
T ss_pred ---EEEECccccCCCCC-HHHHHHH-HcCCCEEEEEECCCC
Confidence 3344322 33444 3334444 467775 56776664
No 132
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=36.10 E-value=46 Score=34.53 Aligned_cols=82 Identities=29% Similarity=0.460 Sum_probs=52.4
Q ss_pred cccccCCCCCChHHHHHHHHhCCce-EEeeccccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccCCCCCcchHH
Q 008086 427 AGLYNTAKRDGYAAVAEMFAKNSCK-MILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFE 505 (578)
Q Consensus 427 AGyYNt~~rdGY~~Ia~mfak~~~~-l~ftc~Em~d~eqp~~~~s~Pe~Lv~QV~~aa~~~Gv~v~GENAl~~~d~~~~~ 505 (578)
-||||+--|.|-+.-++..|+.|+. ++.. |+ | ||+- --+++.|++|||++--=-|-.+-| +
T Consensus 101 mgYYNPIl~yG~e~~iq~ak~aGanGfiiv--Dl-----P------pEEa-~~~Rne~~k~gislvpLvaPsTtd----e 162 (268)
T KOG4175|consen 101 MGYYNPILRYGVENYIQVAKNAGANGFIIV--DL-----P------PEEA-ETLRNEARKHGISLVPLVAPSTTD----E 162 (268)
T ss_pred eecccHHHhhhHHHHHHHHHhcCCCceEec--cC-----C------hHHH-HHHHHHHHhcCceEEEeeCCCChH----H
Confidence 5999999999999989988888875 3332 22 2 3433 468999999999976443333322 2
Q ss_pred HHHHhccCCCceeeEEEe--ecCccc
Q 008086 506 QMKKNLFGENVVDLFTYQ--RMGAYF 529 (578)
Q Consensus 506 qi~~~~~~~~~~~~FTyl--Rm~~~l 529 (578)
+|..-. ..-++|-|+ |||-.=
T Consensus 163 Rmell~---~~adsFiYvVSrmG~TG 185 (268)
T KOG4175|consen 163 RMELLV---EAADSFIYVVSRMGVTG 185 (268)
T ss_pred HHHHHH---HhhcceEEEEEeccccc
Confidence 222111 124567775 887653
No 133
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=36.10 E-value=68 Score=34.81 Aligned_cols=53 Identities=21% Similarity=0.397 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCce-EEeec-----cccCCCCCCC-CCCCC--hHHHHHHHHHHHHhcCCeee
Q 008086 439 AAVAEMFAKNSCK-MILPG-----MDLSDEHQPR-ESFSS--PESLLAQIRTACNKHGVEVS 491 (578)
Q Consensus 439 ~~Ia~mfak~~~~-l~ftc-----~Em~d~eqp~-~~~s~--Pe~Lv~QV~~aa~~~Gv~v~ 491 (578)
...|+++|+.|++ +++|. +-|=|+.... ....+ -..||..+.+||+++|+.+.
T Consensus 84 ~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G 145 (384)
T smart00812 84 EEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFG 145 (384)
T ss_pred HHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEE
Confidence 6779999999998 45664 5566665332 22222 25799999999999999864
No 134
>PRK08445 hypothetical protein; Provisional
Probab=35.73 E-value=51 Score=35.02 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCcceEE---ecce-eeccccCCCccccchHHHHHHHHHHHcCCcEEEEEee
Q 008086 116 AAGLKALKLLGVEGVE---LPVW-WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (578)
Q Consensus 116 ~~~L~~LK~~GV~GV~---vdVW-WGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsF 172 (578)
+..|++||++|++-+. +..- -.+-+.-.|++-.-..|.+..+.++++||++-.-|=|
T Consensus 144 ~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~ 204 (348)
T PRK08445 144 KEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMF 204 (348)
T ss_pred HHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEe
Confidence 6799999999998543 3221 1122233366777777899999999999999666555
No 135
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=35.66 E-value=60 Score=33.52 Aligned_cols=90 Identities=12% Similarity=0.164 Sum_probs=61.3
Q ss_pred CCceEEEeeecceeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEE
Q 008086 90 DAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVS 169 (578)
Q Consensus 90 ~~vpvyVmLPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vv 169 (578)
..+|+.+|.=+..|- .-.+++-++.++++||+||-++-- | +....++.+.++++||+....
T Consensus 90 ~~~p~vlm~Y~N~i~-------~~G~e~F~~~~~~aGvdgviipDL--------P----~ee~~~~~~~~~~~gi~~I~l 150 (263)
T CHL00200 90 IKAPIVIFTYYNPVL-------HYGINKFIKKISQAGVKGLIIPDL--------P----YEESDYLISVCNLYNIELILL 150 (263)
T ss_pred CCCCEEEEecccHHH-------HhCHHHHHHHHHHcCCeEEEecCC--------C----HHHHHHHHHHHHHcCCCEEEE
Confidence 457877776443321 235677899999999999999854 1 234568999999999999666
Q ss_pred EeeecCCCCCCCCChhhHhhhccCCC-eeeecCCCCc
Q 008086 170 LCFHALKQPKIPLPDWVSQIGESQSS-IFYTDQSGQQ 205 (578)
Q Consensus 170 msFH~cg~~~IpLP~WV~~~g~~~pd-I~ytD~~G~r 205 (578)
++- + +.+..+..+.+.-.. |++..+.|..
T Consensus 151 v~P------t-T~~eri~~i~~~a~gFIY~vS~~GvT 180 (263)
T CHL00200 151 IAP------T-SSKSRIQKIARAAPGCIYLVSTTGVT 180 (263)
T ss_pred ECC------C-CCHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 654 2 346788777655543 4554666654
No 136
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=35.23 E-value=58 Score=33.74 Aligned_cols=86 Identities=15% Similarity=0.159 Sum_probs=51.6
Q ss_pred CCceEEEeeecceeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEE
Q 008086 90 DAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVS 169 (578)
Q Consensus 90 ~~vpvyVmLPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vv 169 (578)
.+|++|-+-.|--+-- ....++.-|+.+|.+|++.|+|. .|--...=.-..++++++++.|||+.+=
T Consensus 66 ~gV~v~~GGtl~E~a~-----~q~~~~~yl~~~k~lGf~~IEiS--------dGti~l~~~~r~~~I~~~~~~Gf~v~~E 132 (244)
T PF02679_consen 66 HGVYVYPGGTLFEVAY-----QQGKFDEYLEECKELGFDAIEIS--------DGTIDLPEEERLRLIRKAKEEGFKVLSE 132 (244)
T ss_dssp TT-EEEE-HHHHHHHH-----HTT-HHHHHHHHHHCT-SEEEE----------SSS---HHHHHHHHHHHCCTTSEEEEE
T ss_pred cCCeEeCCcHHHHHHH-----hcChHHHHHHHHHHcCCCEEEec--------CCceeCCHHHHHHHHHHHHHCCCEEeec
Confidence 4788887766654431 13456799999999999999997 3444445556778999999999998554
Q ss_pred EeeecCC-CCCCCCChhhHh
Q 008086 170 LCFHALK-QPKIPLPDWVSQ 188 (578)
Q Consensus 170 msFH~cg-~~~IpLP~WV~~ 188 (578)
..-...+ ....++..|+.+
T Consensus 133 vG~K~~~~~~~~~~~~~i~~ 152 (244)
T PF02679_consen 133 VGKKDPESDFSLDPEELIEQ 152 (244)
T ss_dssp ES-SSHHHHTT--CCHHHHH
T ss_pred ccCCCchhcccCCHHHHHHH
Confidence 4321111 123347788876
No 137
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=35.20 E-value=46 Score=35.00 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCcceEEe---cce-eeccccCCCccccchHHHHHHHHHHHcCCcEEEEEee
Q 008086 116 AAGLKALKLLGVEGVEL---PVW-WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (578)
Q Consensus 116 ~~~L~~LK~~GV~GV~v---dVW-WGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsF 172 (578)
+..|++||++|++.+-- ... --+-..-.+++..|..+.+..+.++++|+++-.-|=+
T Consensus 150 ~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~ 210 (351)
T TIGR03700 150 EEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLY 210 (351)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEe
Confidence 46799999999986641 111 1122233367788999999999999999998555444
No 138
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=35.15 E-value=93 Score=33.51 Aligned_cols=53 Identities=28% Similarity=0.479 Sum_probs=0.0
Q ss_pred CceEEEeeecceeeCCCccccHHHHH---HHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcC--Cc
Q 008086 91 AVRLFVGLPLDTVSDANTVNHAKAIA---AGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIG--LK 165 (578)
Q Consensus 91 ~vpvyVmLPLd~V~~~n~~~~~~a~~---~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~G--LK 165 (578)
++++||.+ |++-+...++ ..|+.|.++|||+|.+. .- .++.++++.+ |.
T Consensus 62 gkk~~V~~--------N~~~~~~~~~~~~~~l~~l~e~GvDaviv~--------Dp----------g~i~l~~e~~p~l~ 115 (347)
T COG0826 62 GKKVYVAV--------NTLLHNDELETLERYLDRLVELGVDAVIVA--------DP----------GLIMLARERGPDLP 115 (347)
T ss_pred CCeEEEEe--------ccccccchhhHHHHHHHHHHHcCCCEEEEc--------CH----------HHHHHHHHhCCCCc
Q ss_pred EEEE
Q 008086 166 LHVS 169 (578)
Q Consensus 166 l~vv 169 (578)
+|++
T Consensus 116 ih~S 119 (347)
T COG0826 116 IHVS 119 (347)
T ss_pred EEEe
No 139
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=35.09 E-value=56 Score=39.46 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=18.8
Q ss_pred HHHHHHHHHcCcceEEe-cce-eecc
Q 008086 116 AAGLKALKLLGVEGVEL-PVW-WGVA 139 (578)
Q Consensus 116 ~~~L~~LK~~GV~GV~v-dVW-WGiv 139 (578)
-.-|+.||++||..|++ ||+ ++-|
T Consensus 289 i~hLk~L~eLGVThVeLLPv~df~tv 314 (898)
T TIGR02103 289 VQHLKKLADAGVTHLHLLPTFDIATV 314 (898)
T ss_pred hHHHHHHHhCCCcEEEEcChhhcCcc
Confidence 34789999999999985 777 6644
No 140
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=34.53 E-value=5.4e+02 Score=26.81 Aligned_cols=134 Identities=14% Similarity=0.162 Sum_probs=81.9
Q ss_pred ccccHHHHHHHHHHHHHcCcceEEe---cce--eeccccCC-CccccchHHHHHHHHHHHcCCcEEEEEeeecC------
Q 008086 108 TVNHAKAIAAGLKALKLLGVEGVEL---PVW--WGVAEKEA-MGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL------ 175 (578)
Q Consensus 108 ~~~~~~a~~~~L~~LK~~GV~GV~v---dVW--WGivE~~~-p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~c------ 175 (578)
.+-..+.|.+.+..|...|..++++ |-+ -|.-|-.. .+.|.=+.++++.+.+++.|+.|+|-+-+=+.
T Consensus 12 ~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~~~l~ 91 (301)
T cd06565 12 AVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHLEFILK 91 (301)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHHHHHHh
Confidence 5667788999999999999999876 322 34333322 68899999999999999999999775543100
Q ss_pred ----CC-CCCCCChhhHhhhccCCCee------eecCCCCccccccccccCcccccC---------CCChhHHHHHHHHH
Q 008086 176 ----KQ-PKIPLPDWVSQIGESQSSIF------YTDQSGQQFKGCLSLAVDDLPVLD---------GKTPIQVYQEFCES 235 (578)
Q Consensus 176 ----g~-~~IpLP~WV~~~g~~~pdI~------ytD~~G~r~~E~LSl~vD~~pvl~---------GRTpiq~Y~dfm~S 235 (578)
.. +..+-|..+... .+|+.+ +.+=.-.-...++-+|+|+...++ .++..+.|.+|.+.
T Consensus 92 ~~~~~~l~~~~~~~~~l~~--~~~~t~~fi~~li~ev~~~f~s~~~HIG~DE~~~~g~~~~~~~~~~~~~~~l~~~~~~~ 169 (301)
T cd06565 92 HPEFRHLREVDDPPQTLCP--GEPKTYDFIEEMIRQVLELHPSKYIHIGMDEAYDLGRGRSLRKHGNLGRGELYLEHLKK 169 (301)
T ss_pred CcccccccccCCCCCccCC--CChhHHHHHHHHHHHHHHhCCCCeEEECCCcccccCCCHHHHHhcCCCHHHHHHHHHHH
Confidence 00 001111111110 001000 000000011478999999998653 44567889999888
Q ss_pred HHHhhchh
Q 008086 236 FKSSFKPF 243 (578)
Q Consensus 236 F~~~f~~~ 243 (578)
..+..+..
T Consensus 170 v~~~v~~~ 177 (301)
T cd06565 170 VLKIIKKR 177 (301)
T ss_pred HHHHHHHc
Confidence 77777655
No 141
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=33.64 E-value=89 Score=30.28 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEE
Q 008086 112 AKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVS 169 (578)
Q Consensus 112 ~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vv 169 (578)
...++.-|+..+++|.+||++.. +.... .+.+...++.+.+++.||++...
T Consensus 14 ~~~l~~~l~~~~~~G~~gvEi~~-~~~~~------~~~~~~~~l~~~l~~~gl~i~~~ 64 (274)
T COG1082 14 ELPLEEILRKAAELGFDGVELSP-GDLFP------ADYKELAELKELLADYGLEITSL 64 (274)
T ss_pred CCCHHHHHHHHHHhCCCeEecCC-cccCC------chhhhHHHHHHHHHHcCcEEEee
Confidence 34577899999999999999986 22111 12222789999999999999433
No 142
>PRK07329 hypothetical protein; Provisional
Probab=33.27 E-value=1.2e+02 Score=30.37 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=26.9
Q ss_pred ChHHHHHHHHhCCce-EEeeccccCCCCCCCCCCCChHHH---HHHHHHHHHhcCCe
Q 008086 437 GYAAVAEMFAKNSCK-MILPGMDLSDEHQPRESFSSPESL---LAQIRTACNKHGVE 489 (578)
Q Consensus 437 GY~~Ia~mfak~~~~-l~ftc~Em~d~eqp~~~~s~Pe~L---v~QV~~aa~~~Gv~ 489 (578)
-|..+.+++++.|+. +++. ||.+. |+.+ ..+..+.+++.|++
T Consensus 196 ~~~~~l~~~~~~g~~~i~~g----SDAH~-------~~~vg~~~~~a~~~l~~~g~~ 241 (246)
T PRK07329 196 LYRYAIELYKQLGGKLFSIG----SDAHK-------LEHYRYNFDDAQKLLKEHGIK 241 (246)
T ss_pred chHHHHHHHHHcCCeEEEec----CCCCC-------HHHHHHHHHHHHHHHHHcCCc
Confidence 467778888888875 6766 66664 4444 34455566666654
No 143
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=32.54 E-value=83 Score=32.97 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcE
Q 008086 114 AIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (578)
Q Consensus 114 a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl 166 (578)
.++.-|+.+|++|.+.|++. .|.=-.+=+.-.++++++.+.|+++
T Consensus 91 kvdeyl~e~~~lGfe~iEIS--------~G~i~m~~eek~~lIe~a~d~Gf~v 135 (258)
T COG1809 91 KVDEYLNEAKELGFEAIEIS--------NGTIPMSTEEKCRLIERAVDEGFMV 135 (258)
T ss_pred cHHHHHHHHHHcCccEEEec--------CCeeecchHHHHHHHHHHHhcccEE
Confidence 45689999999999999986 4555556678889999999999998
No 144
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=32.39 E-value=2.2e+02 Score=30.53 Aligned_cols=85 Identities=21% Similarity=0.248 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHH--cCCcEEEEEeeecCCCCCCCCChhhHhhhc
Q 008086 114 AIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEK--IGLKLHVSLCFHALKQPKIPLPDWVSQIGE 191 (578)
Q Consensus 114 a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~--~GLKl~vvmsFH~cg~~~IpLP~WV~~~g~ 191 (578)
...+-+.+||++|++-|. | .-.--+|.-+.+..+++++ .|-++ ++++.+ =|.||.-+.+
T Consensus 111 ~~~~l~~~lk~lGf~~v~--------e--t~~~ad~~~~e~~~e~i~~~~~~~~~-p~itS~--------CP~~v~~iek 171 (374)
T TIGR02512 111 VTGKMVAALRKLGFDYVF--------D--TNFAADLTIMEEGTELLERLKNGGKL-PMFTSC--------CPGWVNYAEK 171 (374)
T ss_pred HHHHHHHHHHHcCCCEEE--------E--CcHHHHHHHHHHHHHHHHHhhcCCCC-CeEecC--------CHHHHHHHHH
Confidence 455777888999998764 2 1233577777777777764 23332 455553 4999999988
Q ss_pred cCCCeeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHH
Q 008086 192 SQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESF 236 (578)
Q Consensus 192 ~~pdI~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF 236 (578)
.+|+++ .+|| |+ ++|++.--.+++..
T Consensus 172 ~~P~li----------~~ls------~v---~SP~~~~g~~iK~~ 197 (374)
T TIGR02512 172 YYPELL----------PNLS------SC---KSPQQMLGAVIKTY 197 (374)
T ss_pred HChhhh----------cccc------CC---CChHHHHHHHHHHH
Confidence 999753 4555 33 67988877777664
No 145
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=31.81 E-value=77 Score=30.31 Aligned_cols=44 Identities=23% Similarity=0.303 Sum_probs=34.0
Q ss_pred CCCCCCCCCCceEEEeeecceeeCCCccccHHHHHHHHHHHHHcCcc
Q 008086 82 SSARPKSLDAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVE 128 (578)
Q Consensus 82 ~~~~~~~~~~vpvyVmLPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~ 128 (578)
+.-.+-+.+++++|+-= |.+.+--+.+.+.+++..++|+++|-+
T Consensus 82 sV~~pLsd~gigIFavS---tydtDhiLVr~~dLekAv~~L~eaGhe 125 (128)
T COG3603 82 SVSQPLSDNGIGIFAVS---TYDTDHILVREEDLEKAVKALEEAGHE 125 (128)
T ss_pred hhhhhHhhCCccEEEEE---eccCceEEEehhhHHHHHHHHHHcCCc
Confidence 34455566799999843 444567788999999999999999965
No 146
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=31.63 E-value=4.7e+02 Score=27.69 Aligned_cols=92 Identities=9% Similarity=0.126 Sum_probs=55.3
Q ss_pred ccccHHHHHHHHHHHHHcC--cceEEecceeeccccCCCccccch-----HH--HHHHHHHHHcCCcEEEEEeeecCCCC
Q 008086 108 TVNHAKAIAAGLKALKLLG--VEGVELPVWWGVAEKEAMGKYNWS-----GY--LAVAEMVEKIGLKLHVSLCFHALKQP 178 (578)
Q Consensus 108 ~~~~~~a~~~~L~~LK~~G--V~GV~vdVWWGivE~~~p~~YdWs-----gY--~~l~~mv~~~GLKl~vvmsFH~cg~~ 178 (578)
..+..+.+.+-++.+++.| +|+|.+|+=|.- +-+.|+|. .- +++++-+++.|+|+.+++-=|.+-..
T Consensus 19 ~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~ 94 (339)
T cd06602 19 GYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANE 94 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECccccc----CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCc
Confidence 3456777888888888865 688999865531 13445443 34 88889999999999444322221100
Q ss_pred -CCCCChhhHhhhccCCCeeeecCCCCcc
Q 008086 179 -KIPLPDWVSQIGESQSSIFYTDQSGQQF 206 (578)
Q Consensus 179 -~IpLP~WV~~~g~~~pdI~ytD~~G~r~ 206 (578)
.-.-|.+ +.+. .-+.|.++.+|...
T Consensus 95 ~~~~~~~~--~e~~-~~g~~v~~~~g~~~ 120 (339)
T cd06602 95 PTGSYPPY--DRGL-EMDVFIKNDDGSPY 120 (339)
T ss_pred CCCCCHHH--HHHH-HCCeEEECCCCCEE
Confidence 0012222 3333 23688888888654
No 147
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=31.35 E-value=89 Score=30.98 Aligned_cols=59 Identities=7% Similarity=0.161 Sum_probs=42.7
Q ss_pred hHHHHHHHHhCCceEEeeccccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccC
Q 008086 438 YAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSS 496 (578)
Q Consensus 438 Y~~Ia~mfak~~~~l~ftc~Em~d~eqp~~~~s~Pe~Lv~QV~~aa~~~Gv~v~GENAl 496 (578)
-..|++.+.+.|.+.+++|+.-..-...---..--+.++..+....++.|+.++|||.-
T Consensus 124 ~~el~~~~~~~G~~~~i~~v~~~~l~~~~lG~~~~~~~~~~l~~l~~~~~~~~~GE~GE 182 (218)
T TIGR03679 124 QEEYLRELVERGFRFIIVSVSAYGLDESWLGREIDEKYIEKLKALNKRYGINPAGEGGE 182 (218)
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCCChHHCCCccCHHHHHHHHHHHhhcCccccCCCce
Confidence 56799999999999999998643211100012223578888999999999999999964
No 148
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=31.25 E-value=38 Score=34.88 Aligned_cols=31 Identities=23% Similarity=0.517 Sum_probs=24.8
Q ss_pred CCccccHHHHHHHHHHHHHcCcceEEecceee
Q 008086 106 ANTVNHAKAIAAGLKALKLLGVEGVELPVWWG 137 (578)
Q Consensus 106 ~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWG 137 (578)
++++..+..+++-.++|+ .|+..||+|||=|
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcR~vElD~wdg 53 (229)
T cd08627 23 GDQFSSESSLEAYARCLR-MGCRCIELDCWDG 53 (229)
T ss_pred CCccCCcccHHHHHHHHH-hCCCEEEEEeecC
Confidence 566766677777777777 9999999999965
No 149
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=31.13 E-value=81 Score=28.63 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHcCcceEEeccee---ecccc-CCCccccchHHHHHHHHHHHcCCcEEEEEeeec
Q 008086 112 AKAIAAGLKALKLLGVEGVELPVWW---GVAEK-EAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHA 174 (578)
Q Consensus 112 ~~a~~~~L~~LK~~GV~GV~vdVWW---GivE~-~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~ 174 (578)
.+.+...++..+.+|++.|.+...+ ..... +..-..--..++++.+++++.|+++ .+=.|.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i--~lE~~~ 134 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRI--ALENHP 134 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEE--EEE-SS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceE--EEeccc
Confidence 4577888999999999999988542 11111 1112223347788999999999665 444443
No 150
>PRK09505 malS alpha-amylase; Reviewed
Probab=30.88 E-value=1.1e+02 Score=35.96 Aligned_cols=61 Identities=13% Similarity=0.206 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHcCcceEEec-ceeeccccC-----------CCccc-------------cchHHHHHHHHHHHcCCcE
Q 008086 112 AKAIAAGLKALKLLGVEGVELP-VWWGVAEKE-----------AMGKY-------------NWSGYLAVAEMVEKIGLKL 166 (578)
Q Consensus 112 ~~a~~~~L~~LK~~GV~GV~vd-VWWGivE~~-----------~p~~Y-------------dWsgY~~l~~mv~~~GLKl 166 (578)
-+.|.+.|..||++||++|-+. ++=.+.... +...| ....++++++-+++.|+||
T Consensus 229 l~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~V 308 (683)
T PRK09505 229 LRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRI 308 (683)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4678899999999999999864 321111000 00111 3457899999999999999
Q ss_pred EEEEee
Q 008086 167 HVSLCF 172 (578)
Q Consensus 167 ~vvmsF 172 (578)
.+=+-+
T Consensus 309 ilD~V~ 314 (683)
T PRK09505 309 LFDVVM 314 (683)
T ss_pred EEEECc
Confidence 555444
No 151
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=30.77 E-value=2.1e+02 Score=30.95 Aligned_cols=106 Identities=14% Similarity=0.104 Sum_probs=63.4
Q ss_pred HHHHHHHHcCcceEEecceeeccccC------CCccccchHHHHHHHHHHHcCCcEEEEEeee-cCCCCCCCCChhhHhh
Q 008086 117 AGLKALKLLGVEGVELPVWWGVAEKE------AMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH-ALKQPKIPLPDWVSQI 189 (578)
Q Consensus 117 ~~L~~LK~~GV~GV~vdVWWGivE~~------~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH-~cg~~~IpLP~WV~~~ 189 (578)
+++++..++|++.|.+-+ +.=|.. ......+.-+.+++++++++|+++++.+|.- .|-.-.-.-|+.|.+.
T Consensus 125 ~die~A~~~g~~~v~i~~--s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~ 202 (347)
T PLN02746 125 KGFEAAIAAGAKEVAVFA--SASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYV 202 (347)
T ss_pred HHHHHHHHcCcCEEEEEE--ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHH
Confidence 677778889999987765 332211 1223356678889999999999999777642 2321112247777764
Q ss_pred hccCCCeeeecCCCCccccccccccCcccc---cCCCChhHHHHHHHHHHHHhhc
Q 008086 190 GESQSSIFYTDQSGQQFKGCLSLAVDDLPV---LDGKTPIQVYQEFCESFKSSFK 241 (578)
Q Consensus 190 g~~~pdI~ytD~~G~r~~E~LSl~vD~~pv---l~GRTpiq~Y~dfm~SF~~~f~ 241 (578)
.+ +.+..|+|.+-+ .+--+|.++| ++++.+++.|.
T Consensus 203 ~~----------------~~~~~Gad~I~l~DT~G~a~P~~v~-~lv~~l~~~~~ 240 (347)
T PLN02746 203 AK----------------ELYDMGCYEISLGDTIGVGTPGTVV-PMLEAVMAVVP 240 (347)
T ss_pred HH----------------HHHHcCCCEEEecCCcCCcCHHHHH-HHHHHHHHhCC
Confidence 32 233344444433 2334586655 56677777663
No 152
>PRK15108 biotin synthase; Provisional
Probab=30.70 E-value=84 Score=33.32 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCcceEEecce--eeccccCCCccccchHHHHHHHHHHHcCCcE
Q 008086 116 AAGLKALKLLGVEGVELPVW--WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (578)
Q Consensus 116 ~~~L~~LK~~GV~GV~vdVW--WGivE~~~p~~YdWsgY~~l~~mv~~~GLKl 166 (578)
...|++||++||+.+.++.= -+.-.+--+.. +|....+..+.+++.|+++
T Consensus 136 ~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~-~~~~rl~~i~~a~~~G~~v 187 (345)
T PRK15108 136 ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTR-TYQERLDTLEKVRDAGIKV 187 (345)
T ss_pred HHHHHHHHHcCCCEEeeccccChHhcCCCCCCC-CHHHHHHHHHHHHHcCCce
No 153
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=30.68 E-value=73 Score=32.77 Aligned_cols=51 Identities=29% Similarity=0.483 Sum_probs=41.0
Q ss_pred cccccCCCCCChHHHHHHHHhCCce-EEeeccccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeee
Q 008086 427 AGLYNTAKRDGYAAVAEMFAKNSCK-MILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVS 491 (578)
Q Consensus 427 AGyYNt~~rdGY~~Ia~mfak~~~~-l~ftc~Em~d~eqp~~~~s~Pe~Lv~QV~~aa~~~Gv~v~ 491 (578)
-+|||+--+-|+...++++++.|++ ++++ || |-+-...+.++|+++|+..-
T Consensus 95 m~Y~N~i~~~G~e~f~~~~~~aGvdGviip--DL------------p~ee~~~~~~~~~~~gl~~I 146 (258)
T PRK13111 95 MTYYNPIFQYGVERFAADAAEAGVDGLIIP--DL------------PPEEAEELRAAAKKHGLDLI 146 (258)
T ss_pred EecccHHhhcCHHHHHHHHHHcCCcEEEEC--CC------------CHHHHHHHHHHHHHcCCcEE
Confidence 4899998888999999999999996 6665 22 23466788999999998754
No 154
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=30.57 E-value=77 Score=32.03 Aligned_cols=112 Identities=16% Similarity=0.226 Sum_probs=66.2
Q ss_pred EEecce--eeccccC-CCccccchHHHH----HHHHHHHcCCcEEEEEeeecCC----CCCCCCChhhHhhhccCCCeee
Q 008086 130 VELPVW--WGVAEKE-AMGKYNWSGYLA----VAEMVEKIGLKLHVSLCFHALK----QPKIPLPDWVSQIGESQSSIFY 198 (578)
Q Consensus 130 V~vdVW--WGivE~~-~p~~YdWsgY~~----l~~mv~~~GLKl~vvmsFH~cg----~~~IpLP~WV~~~g~~~pdI~y 198 (578)
+|+++= ||+||-. -+.+.-=.-+.+ .++-+.+.+++ +|+-+|..- |.-.-||.||.++ -+||+|.
T Consensus 39 ~Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~Aa~rI~~~~~~--iivDtH~~IkTP~GylpgLP~~Vl~~--l~pd~iv 114 (189)
T COG2019 39 LMLEIAKKKGLVEHRDEMRKLPLENQRELQAEAAKRIAEMALE--IIVDTHATIKTPAGYLPGLPSWVLEE--LNPDVIV 114 (189)
T ss_pred HHHHHHHHhCCcccHHHHhcCCHHHHHHHHHHHHHHHHHhhhc--eEEeccceecCCCccCCCCcHHHHHh--cCCCEEE
Confidence 455544 7888752 122222233333 23444555566 599999763 4566799999994 8888876
Q ss_pred ecCC------CCccccccccccCcccccCCCChhHHHHHHHHHHHHhhchhcCCceEe
Q 008086 199 TDQS------GQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITV 250 (578)
Q Consensus 199 tD~~------G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~g~~I~~ 250 (578)
.=+. .+|-++ - +......+---|+.-+++-+.++-..+-+.|.++.|
T Consensus 115 llEaDp~~Il~RR~~D-~----~r~Rd~es~e~i~eHqe~nR~aA~a~A~~~gatVkI 167 (189)
T COG2019 115 LLEADPEEILERRLRD-S----RRDRDVESVEEIREHQEMNRAAAMAYAILLGATVKI 167 (189)
T ss_pred EEeCCHHHHHHHHhcc-c----ccccccccHHHHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 4332 111111 0 000123333467888888899998999999987663
No 155
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=30.55 E-value=1.5e+02 Score=31.12 Aligned_cols=61 Identities=15% Similarity=0.121 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHcCcceEEecceeeccccC----CCccccchHHHHHHHHHHHcCCcEEEEEeeecC
Q 008086 113 KAIAAGLKALKLLGVEGVELPVWWGVAEKE----AMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL 175 (578)
Q Consensus 113 ~a~~~~L~~LK~~GV~GV~vdVWWGivE~~----~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~c 175 (578)
+...+-..-..++|++.|.||..|---+.. --..+.+....+|++.+++.|.+| +|-.|.-
T Consensus 32 ~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi--~lw~~~~ 96 (273)
T PF10566_consen 32 ETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGI--WLWYHSE 96 (273)
T ss_dssp HHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EE--EEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCE--EEEEeCC
Confidence 344556677789999999999999753221 124677899999999999999999 6666654
No 156
>PRK02227 hypothetical protein; Provisional
Probab=30.39 E-value=68 Score=33.30 Aligned_cols=46 Identities=13% Similarity=0.025 Sum_probs=36.4
Q ss_pred HHHHHHHHcCcceEEecceeeccccCCCc---cccchHHHHHHHHHHHcCCcE
Q 008086 117 AGLKALKLLGVEGVELPVWWGVAEKEAMG---KYNWSGYLAVAEMVEKIGLKL 166 (578)
Q Consensus 117 ~~L~~LK~~GV~GV~vdVWWGivE~~~p~---~YdWsgY~~l~~mv~~~GLKl 166 (578)
.-+..++++|++|+|+|-+ +|.+-. .+++....+.++++|++||+.
T Consensus 135 ~l~~~a~~aGf~g~MlDTa----~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~ 183 (238)
T PRK02227 135 SLPAIAADAGFDGAMLDTA----IKDGKSLFDHMDEEELAEFVAEARSHGLMS 183 (238)
T ss_pred HHHHHHHHcCCCEEEEecc----cCCCcchHhhCCHHHHHHHHHHHHHcccHh
Confidence 4677889999999999953 555433 466788888999999999987
No 157
>PRK14706 glycogen branching enzyme; Provisional
Probab=30.15 E-value=94 Score=35.98 Aligned_cols=58 Identities=17% Similarity=0.246 Sum_probs=39.7
Q ss_pred ccHHHHHHHH-HHHHHcCcceEEecceeeccccCCCccccch-----------------HHHHHHHHHHHcCCcEEEEEe
Q 008086 110 NHAKAIAAGL-KALKLLGVEGVELPVWWGVAEKEAMGKYNWS-----------------GYLAVAEMVEKIGLKLHVSLC 171 (578)
Q Consensus 110 ~~~~a~~~~L-~~LK~~GV~GV~vdVWWGivE~~~p~~YdWs-----------------gY~~l~~mv~~~GLKl~vvms 171 (578)
-.-+.+...| ..||++||..|++=- +.|- |...+|- .++++++.+.+.||+|..=+-
T Consensus 164 ~ty~~~~~~l~~ylk~lG~t~velmP---v~e~--~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v 238 (639)
T PRK14706 164 LNYRELAHRLGEYVTYMGYTHVELLG---VMEH--PFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWV 238 (639)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEccc---hhcC--CCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 3445566666 689999999998642 3442 3344453 378999999999999944333
Q ss_pred e
Q 008086 172 F 172 (578)
Q Consensus 172 F 172 (578)
+
T Consensus 239 ~ 239 (639)
T PRK14706 239 P 239 (639)
T ss_pred c
Confidence 3
No 158
>PRK05402 glycogen branching enzyme; Provisional
Probab=30.02 E-value=1e+02 Score=35.88 Aligned_cols=57 Identities=19% Similarity=0.245 Sum_probs=37.9
Q ss_pred cHHHHHHHH-HHHHHcCcceEEecceeeccccCCCccccc-----------------hHHHHHHHHHHHcCCcEEEEEee
Q 008086 111 HAKAIAAGL-KALKLLGVEGVELPVWWGVAEKEAMGKYNW-----------------SGYLAVAEMVEKIGLKLHVSLCF 172 (578)
Q Consensus 111 ~~~a~~~~L-~~LK~~GV~GV~vdVWWGivE~~~p~~YdW-----------------sgY~~l~~mv~~~GLKl~vvmsF 172 (578)
.-+.+...| ..||++||+.|.+-=- .|. |...+| ..++++++.+++.||+|..=+-+
T Consensus 263 ~~~~i~~~l~~ylk~LGv~~i~L~Pi---~e~--~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~ 337 (726)
T PRK05402 263 SYRELADQLIPYVKEMGFTHVELLPI---AEH--PFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVP 337 (726)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCc---ccC--CCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 335777775 9999999999987421 121 111122 24789999999999999444434
No 159
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=29.81 E-value=62 Score=31.24 Aligned_cols=45 Identities=27% Similarity=0.393 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcC
Q 008086 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIG 163 (578)
Q Consensus 111 ~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~G 163 (578)
+.+++++.++.||..||+.|-|--=|+.+-++ .=+++.+++++.|
T Consensus 132 d~~~v~~~~~~l~~~gv~avAV~~~fS~~np~--------hE~~v~eii~e~g 176 (176)
T PF05378_consen 132 DEDEVREALRELKDKGVEAVAVSLLFSYRNPE--------HEQRVAEIIREEG 176 (176)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECccCCCCHH--------HHHHHHHHHHhcC
Confidence 47899999999999999999998888877654 2347888888876
No 160
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=29.69 E-value=1.5e+02 Score=31.76 Aligned_cols=93 Identities=15% Similarity=0.076 Sum_probs=62.9
Q ss_pred eeeCCCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCC
Q 008086 102 TVSDANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIP 181 (578)
Q Consensus 102 ~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~Ip 181 (578)
+|+..+.....+++.+.++.|+.+|.+.|.-..=+.-.+.-+-.. =+--.++-++..+-..|+ |||.=..-+++==
T Consensus 15 iIaPSs~~~~~~~~~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s~--~~R~~dL~~af~d~~vk~--Il~~rGGygs~rl 90 (313)
T COG1619 15 IIAPSSGATATDALKRAIQRLENLGFEVVFGEHILRRDQYFAGSD--EERAEDLMSAFSDPDVKA--ILCVRGGYGSNRL 90 (313)
T ss_pred EEecCcccchHHHHHHHHHHHHHcCCEEEechhhhhccccccCCH--HHHHHHHHHHhcCCCCeE--EEEcccCCChhhh
Confidence 455555555778899999999999988877665444332211100 122345666666666666 9999655456667
Q ss_pred CChhhHhhhccCCCeee
Q 008086 182 LPDWVSQIGESQSSIFY 198 (578)
Q Consensus 182 LP~WV~~~g~~~pdI~y 198 (578)
||.|-.++.+++|-||+
T Consensus 91 Lp~ld~~~i~~~pKifi 107 (313)
T COG1619 91 LPYLDYDLIRNHPKIFI 107 (313)
T ss_pred hhhcchHHHhcCCceEE
Confidence 99999888899998884
No 161
>PRK12677 xylose isomerase; Provisional
Probab=29.65 E-value=92 Score=33.72 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHcCcceEEec---ce-eeccccCCCccccchHHHHHHHHHHHcCCcEE
Q 008086 114 AIAAGLKALKLLGVEGVELP---VW-WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLH 167 (578)
Q Consensus 114 a~~~~L~~LK~~GV~GV~vd---VW-WGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~ 167 (578)
.++..+++++++|++||++. +| |+....+ .+ ....++.+++++.||+|.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~----~~-~~~~~lk~~l~~~GL~v~ 84 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDAE----RD-RIIKRFKKALDETGLVVP 84 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhh----hH-HHHHHHHHHHHHcCCeeE
Confidence 46678999999999999984 12 3332211 01 146789999999999983
No 162
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=29.63 E-value=1.4e+02 Score=31.74 Aligned_cols=91 Identities=15% Similarity=0.224 Sum_probs=58.6
Q ss_pred HHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhhHhhhc----c
Q 008086 117 AGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGE----S 192 (578)
Q Consensus 117 ~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~~~g~----~ 192 (578)
.+|+.....||+.|.+..-+.-. ..-.+.++.+++.|+++.+.++. ..-.-|..+.+..+ .
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~----------~~~~~~i~~ak~~G~~v~~~l~~-----a~~~~~e~l~~~a~~~~~~ 156 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEA----------DVSEQHIGLARELGMDTVGFLMM-----SHMAPPEKLAEQAKLMESY 156 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchH----------HHHHHHHHHHHHCCCeEEEEEEe-----ccCCCHHHHHHHHHHHHhC
Confidence 57899999999999987643322 23588999999999999887664 23335566555322 1
Q ss_pred CCC-eeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhc
Q 008086 193 QSS-IFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFK 241 (578)
Q Consensus 193 ~pd-I~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~ 241 (578)
-++ |.++|-.|. -||-++ .++.+.+++++.
T Consensus 157 Ga~~i~i~DT~G~------------------~~P~~v-~~~v~~l~~~l~ 187 (337)
T PRK08195 157 GAQCVYVVDSAGA------------------LLPEDV-RDRVRALRAALK 187 (337)
T ss_pred CCCEEEeCCCCCC------------------CCHHHH-HHHHHHHHHhcC
Confidence 233 444555553 356444 456677776664
No 163
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=29.56 E-value=6.5e+02 Score=26.30 Aligned_cols=88 Identities=13% Similarity=0.161 Sum_probs=55.5
Q ss_pred cccHHHHHHHHHHHHHcC--cceEEecceeeccccCCCccccch-----HHHHHHHHHHHcCCcEEEEEeeecCCCCCCC
Q 008086 109 VNHAKAIAAGLKALKLLG--VEGVELPVWWGVAEKEAMGKYNWS-----GYLAVAEMVEKIGLKLHVSLCFHALKQPKIP 181 (578)
Q Consensus 109 ~~~~~a~~~~L~~LK~~G--V~GV~vdVWWGivE~~~p~~YdWs-----gY~~l~~mv~~~GLKl~vvmsFH~cg~~~Ip 181 (578)
.+..+.+..-++.+++.+ +|.|.+|.=|. .+-+.|+|. .-+++++-+++.|+|+.+++-=|..... .
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~----~~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~--~ 93 (317)
T cd06600 20 YYPQDKVVEVVDIMQKEGFPYDVVFLDIHYM----DSYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQ--N 93 (317)
T ss_pred CCCHHHHHHHHHHHHHcCCCcceEEEChhhh----CCCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCC--C
Confidence 456777888888888876 58899996442 123556654 4678899999999998555533322111 1
Q ss_pred CChhhHhhhccCCCeeeecCCCCc
Q 008086 182 LPDWVSQIGESQSSIFYTDQSGQQ 205 (578)
Q Consensus 182 LP~WV~~~g~~~pdI~ytD~~G~r 205 (578)
-|.+. ++ ...+.|.++.+|..
T Consensus 94 ~~~~~--~~-~~~~~~v~~~~g~~ 114 (317)
T cd06600 94 YSPFL--SG-MDKGKFCEIESGEL 114 (317)
T ss_pred ChHHH--HH-HHCCEEEECCCCCe
Confidence 23332 22 23478888888754
No 164
>PRK06256 biotin synthase; Validated
Probab=29.37 E-value=86 Score=32.34 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=35.0
Q ss_pred HHHHHHHHcCcceEEecce--eeccccCCCccccchHHHHHHHHHHHcCCcEE
Q 008086 117 AGLKALKLLGVEGVELPVW--WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLH 167 (578)
Q Consensus 117 ~~L~~LK~~GV~GV~vdVW--WGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~ 167 (578)
..++.||++|++.|.+.+= =-+-++-.+ ..+|..+.+.++.++++|+++.
T Consensus 153 e~l~~LkeaG~~~v~~~lEts~~~~~~i~~-~~t~~~~i~~i~~a~~~Gi~v~ 204 (336)
T PRK06256 153 EQAERLKEAGVDRYNHNLETSRSYFPNVVT-THTYEDRIDTCEMVKAAGIEPC 204 (336)
T ss_pred HHHHHHHHhCCCEEecCCccCHHHHhhcCC-CCCHHHHHHHHHHHHHcCCeec
Confidence 6788999999999977420 001111112 3478889999999999999874
No 165
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=29.29 E-value=63 Score=32.98 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=48.8
Q ss_pred HHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeecCCC----------CCCCCChhhHh
Q 008086 119 LKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQ----------PKIPLPDWVSQ 188 (578)
Q Consensus 119 L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~----------~~IpLP~WV~~ 188 (578)
|++=..+|++.+..- =-||-..|.++.+.+++.|+++-++.++--+.+ |.|.+|.|+.+
T Consensus 150 L~~K~~aGA~f~iTQ-----------~~fd~~~~~~~~~~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~~~Gv~vP~~~~~ 218 (272)
T TIGR00676 150 LKRKVDAGADYAITQ-----------LFFDNDDYYRFVDRCRAAGIDVPIIPGIMPITNFKQLLRFAERCGAEIPAWLVK 218 (272)
T ss_pred HHHHHHcCCCeEeec-----------cccCHHHHHHHHHHHHHcCCCCCEecccCCcCCHHHHHHHHhccCCCCCHHHHH
Confidence 333336899876543 258889999999999999999888888776653 78999999999
Q ss_pred hhcc
Q 008086 189 IGES 192 (578)
Q Consensus 189 ~g~~ 192 (578)
.-++
T Consensus 219 ~l~~ 222 (272)
T TIGR00676 219 RLEK 222 (272)
T ss_pred HHHh
Confidence 6544
No 166
>PLN02417 dihydrodipicolinate synthase
Probab=29.25 E-value=2.5e+02 Score=28.75 Aligned_cols=93 Identities=11% Similarity=0.124 Sum_probs=52.2
Q ss_pred CCceEEEeeecceeeCCCccccHHHHHHHHHHHHHcCcceEEec--ceeeccccCCCccccchHHHHHHHHHHHcCCcEE
Q 008086 90 DAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVELP--VWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLH 167 (578)
Q Consensus 90 ~~vpvyVmLPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~vd--VWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~ 167 (578)
+.+||.++. . ..+-.+++ ...+..+++|+|+|++- -++..-+ .+..+.++-+.++.
T Consensus 69 ~~~pvi~gv-----~---~~~t~~~i-~~a~~a~~~Gadav~~~~P~y~~~~~---------~~i~~~f~~va~~~---- 126 (280)
T PLN02417 69 GKIKVIGNT-----G---SNSTREAI-HATEQGFAVGMHAALHINPYYGKTSQ---------EGLIKHFETVLDMG---- 126 (280)
T ss_pred CCCcEEEEC-----C---CccHHHHH-HHHHHHHHcCCCEEEEcCCccCCCCH---------HHHHHHHHHHHhhC----
Confidence 468877653 1 12222334 46678899999999873 2332111 22223333333333
Q ss_pred EEEeeecCCCCCCCCChhhHhhhccCCCee-eecCCCC
Q 008086 168 VSLCFHALKQPKIPLPDWVSQIGESQSSIF-YTDQSGQ 204 (578)
Q Consensus 168 vvmsFH~cg~~~IpLP~WV~~~g~~~pdI~-ytD~~G~ 204 (578)
+|+=++.-+...+.||.-+.+.-.++|.|. ++|.+|.
T Consensus 127 pi~lYn~P~~tg~~l~~~~l~~l~~~pni~giKdss~~ 164 (280)
T PLN02417 127 PTIIYNVPGRTGQDIPPEVIFKIAQHPNFAGVKECTGN 164 (280)
T ss_pred CEEEEEChhHhCcCCCHHHHHHHhcCCCEEEEEeCCCc
Confidence 666666544345566666666555788854 6888875
No 167
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=29.23 E-value=1.5e+02 Score=29.77 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEee
Q 008086 116 AAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (578)
Q Consensus 116 ~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsF 172 (578)
+.-++.++++|+++|.++.. .+|. .....++.+.++++|++. ++..
T Consensus 91 ~~~i~~~~~~Gadgvii~dl--p~e~-------~~~~~~~~~~~~~~Gl~~--~~~v 136 (244)
T PRK13125 91 DNFLNMARDVGADGVLFPDL--LIDY-------PDDLEKYVEIIKNKGLKP--VFFT 136 (244)
T ss_pred HHHHHHHHHcCCCEEEECCC--CCCc-------HHHHHHHHHHHHHcCCCE--EEEE
Confidence 45688899999999999621 0120 123568999999999999 5555
No 168
>PLN02960 alpha-amylase
Probab=29.08 E-value=1.1e+02 Score=37.20 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=38.7
Q ss_pred HHHHH-HHHHHHHHcCcceEEecceeeccccCCCccccch-----------------HHHHHHHHHHHcCCcEEEEEee
Q 008086 112 AKAIA-AGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWS-----------------GYLAVAEMVEKIGLKLHVSLCF 172 (578)
Q Consensus 112 ~~a~~-~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWs-----------------gY~~l~~mv~~~GLKl~vvmsF 172 (578)
-+++. ..|..||++||+.|.+- .+.|- ++..+|- .++++++.+.+.||+| ||-+
T Consensus 415 f~~~~e~~LdYLk~LGvt~IeLm---Pv~e~--~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~V--ILDv 486 (897)
T PLN02960 415 FKEFTQKVLPHVKKAGYNAIQLI---GVQEH--KDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLV--FLDI 486 (897)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEC---CcccC--CCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEE--EEEe
Confidence 34554 56999999999999874 23442 3333443 3899999999999999 5554
No 169
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=28.96 E-value=1.5e+02 Score=28.24 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeee
Q 008086 115 IAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH 173 (578)
Q Consensus 115 ~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH 173 (578)
.++-++.++.+|++.+.+.-+. +..++.+++++++.+ ++.+.+.+|
T Consensus 17 ~~~~~~~~~~~Gv~~~v~~~~~------------~~~~~~~~~~~~~~~-~i~~~~Gih 62 (252)
T TIGR00010 17 VEEVIERAKAAGVTAVVAVGTD------------LEDFLRALELAEKYP-NVYAAVGVH 62 (252)
T ss_pred HHHHHHHHHHcCCCEEEEecCC------------HHHHHHHHHHHHHCC-CEEEEEEeC
Confidence 4567788899999998744221 245677889999999 998888887
No 170
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=28.84 E-value=78 Score=32.88 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=34.1
Q ss_pred HHHHHHcCcceEEecceeeccccCCCc---cccchHHHHHHHHHHHcCCcE
Q 008086 119 LKALKLLGVEGVELPVWWGVAEKEAMG---KYNWSGYLAVAEMVEKIGLKL 166 (578)
Q Consensus 119 L~~LK~~GV~GV~vdVWWGivE~~~p~---~YdWsgY~~l~~mv~~~GLKl 166 (578)
+..++++|.+|||+|-+ .|.+.. .+++....+.++.++++||+.
T Consensus 137 ~~~a~~aG~~gvMlDTa----~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 137 PEIAAEAGFDGVMLDTA----DKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred HHHHHHcCCCEEEEecc----cCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 56778999999999954 555543 455677778888999999987
No 171
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=28.62 E-value=1.6e+02 Score=29.21 Aligned_cols=52 Identities=13% Similarity=0.008 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHc-CCcE
Q 008086 113 KAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKI-GLKL 166 (578)
Q Consensus 113 ~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~-GLKl 166 (578)
-.++..|+.+|++|.++|++.+=...-... + ..+=...+++.++++++ |+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~i 62 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLS-R-PLKKERAEKFKAIAEEGPSICL 62 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCC-C-CCCHHHHHHHHHHHHHcCCCcE
Confidence 457789999999999999987621100000 0 00115678899999999 7665
No 172
>PRK09936 hypothetical protein; Provisional
Probab=28.53 E-value=1.1e+02 Score=32.91 Aligned_cols=61 Identities=21% Similarity=0.350 Sum_probs=46.2
Q ss_pred cHHHHHHHHHHHHHcCcceEEecce--eeccccCCCccccch----HHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCCh
Q 008086 111 HAKAIAAGLKALKLLGVEGVELPVW--WGVAEKEAMGKYNWS----GYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPD 184 (578)
Q Consensus 111 ~~~a~~~~L~~LK~~GV~GV~vdVW--WGivE~~~p~~YdWs----gY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~ 184 (578)
.+.+|+.-+++++.+|++-+.|- | ||-- +|. +..++++.+++.||||++=|-| =|.
T Consensus 36 ~~~qWq~~~~~~~~~G~~tLivQ-Wt~yG~~--------~fg~~~g~La~~l~~A~~~Gl~v~vGL~~---------Dp~ 97 (296)
T PRK09936 36 TDTQWQGLWSQLRLQGFDTLVVQ-WTRYGDA--------DFGGQRGWLAKRLAAAQQAGLKLVVGLYA---------DPE 97 (296)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEE-eeeccCC--------CcccchHHHHHHHHHHHHcCCEEEEcccC---------ChH
Confidence 46799999999999999999885 4 3322 332 4678899999999999665555 577
Q ss_pred hhHhh
Q 008086 185 WVSQI 189 (578)
Q Consensus 185 WV~~~ 189 (578)
|...+
T Consensus 98 y~q~~ 102 (296)
T PRK09936 98 FFMHQ 102 (296)
T ss_pred HHHHH
Confidence 77664
No 173
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=28.52 E-value=2.7e+02 Score=28.73 Aligned_cols=97 Identities=10% Similarity=-0.012 Sum_probs=0.0
Q ss_pred CCCceEEEeeecceeeCCCccccHHHHHHHHHHHHHcCcceEEe--cceeeccccCCCccccchHHHHHHHHHHHcCCcE
Q 008086 89 LDAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKLLGVEGVEL--PVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (578)
Q Consensus 89 ~~~vpvyVmLPLd~V~~~n~~~~~~a~~~~L~~LK~~GV~GV~v--dVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl 166 (578)
.+.+||+++. .-+.-+.-.+-.+..+++|+|+|++ |-++..-|.+ -..+|+++++.+.+.
T Consensus 68 ~~~~pvi~gv---------~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~-----i~~yf~~v~~~~~~l---- 129 (290)
T TIGR00683 68 KDQIALIAQV---------GSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPE-----IKHYYDTIIAETGGL---- 129 (290)
T ss_pred CCCCcEEEec---------CCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHH-----HHHHHHHHHhhCCCC----
Q ss_pred EEEEeeecCCCCCCCCChhhHhhhccCCC-eeeecCCCC
Q 008086 167 HVSLCFHALKQPKIPLPDWVSQIGESQSS-IFYTDQSGQ 204 (578)
Q Consensus 167 ~vvmsFH~cg~~~IpLP~WV~~~g~~~pd-I~ytD~~G~ 204 (578)
+++=+|.-+....+||.-+...-.++|. +-++|.+|.
T Consensus 130 -pv~lYn~P~~tg~~l~~~~i~~L~~~pnv~giK~s~~d 167 (290)
T TIGR00683 130 -NMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFTAGD 167 (290)
T ss_pred -CEEEEeCccccccCcCHHHHHHHhcCCCEEEEEeCCCC
No 174
>PLN02591 tryptophan synthase
Probab=28.39 E-value=66 Score=33.05 Aligned_cols=99 Identities=17% Similarity=0.254 Sum_probs=61.2
Q ss_pred cccccCCCCCChHHHHHHHHhCCce-EEeeccccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccCCCCCc-chH
Q 008086 427 AGLYNTAKRDGYAAVAEMFAKNSCK-MILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAP-GGF 504 (578)
Q Consensus 427 AGyYNt~~rdGY~~Ia~mfak~~~~-l~ftc~Em~d~eqp~~~~s~Pe~Lv~QV~~aa~~~Gv~v~GENAl~~~d~-~~~ 504 (578)
-+|||+--+-|+....+.+++.|++ ++++=+ |-+-...++++|+++|+..-= ...+ ..-
T Consensus 84 m~Y~N~i~~~G~~~F~~~~~~aGv~GviipDL--------------P~ee~~~~~~~~~~~gl~~I~-----lv~Ptt~~ 144 (250)
T PLN02591 84 FTYYNPILKRGIDKFMATIKEAGVHGLVVPDL--------------PLEETEALRAEAAKNGIELVL-----LTTPTTPT 144 (250)
T ss_pred EecccHHHHhHHHHHHHHHHHcCCCEEEeCCC--------------CHHHHHHHHHHHHHcCCeEEE-----EeCCCCCH
Confidence 4899998889999999999999996 666621 335567889999999987431 1111 123
Q ss_pred HHHHHhccCCCceeeEEEe--ecCcccCCCCChhhHHHHHHHhcC
Q 008086 505 EQMKKNLFGENVVDLFTYQ--RMGAYFFSPEHFPSFTKFVRNLNQ 547 (578)
Q Consensus 505 ~qi~~~~~~~~~~~~FTyl--Rm~~~lf~~~n~~~F~~FVr~m~~ 547 (578)
++|.+.+.. -.+|-|+ |+|-.=-....=.....+++++++
T Consensus 145 ~ri~~ia~~---~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~ 186 (250)
T PLN02591 145 ERMKAIAEA---SEGFVYLVSSTGVTGARASVSGRVESLLQELKE 186 (250)
T ss_pred HHHHHHHHh---CCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHh
Confidence 444444321 2457776 665543221212344555555554
No 175
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=28.18 E-value=1.1e+02 Score=33.49 Aligned_cols=51 Identities=24% Similarity=0.248 Sum_probs=36.6
Q ss_pred HHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEee
Q 008086 118 GLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (578)
Q Consensus 118 ~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsF 172 (578)
.|..++++||+||.-.. -..-....+.-+-..++-++++++||.+-||=|.
T Consensus 15 ~l~~irQ~Gv~gIV~aL----h~iP~g~~W~~~~I~~~k~~ie~~Gl~~~vvESv 65 (362)
T COG1312 15 TLEDIRQAGVKGVVTAL----HHIPAGEVWPVEEILKRKEEIESAGLTWSVVESV 65 (362)
T ss_pred cHHHHHHhCccceeccC----CCCCCCCcCcHHHHHHHHHHHHHcCceEEeecCC
Confidence 57788888999997432 2222233455566778999999999999888654
No 176
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=27.82 E-value=5.8e+02 Score=26.61 Aligned_cols=63 Identities=17% Similarity=0.293 Sum_probs=43.6
Q ss_pred cccHHHHHHHHHHHHHcC--cceEEecceeecccc--CCCccccch-----HHHHHHHHHHHcCCcEEEEEe
Q 008086 109 VNHAKAIAAGLKALKLLG--VEGVELPVWWGVAEK--EAMGKYNWS-----GYLAVAEMVEKIGLKLHVSLC 171 (578)
Q Consensus 109 ~~~~~a~~~~L~~LK~~G--V~GV~vdVWWGivE~--~~p~~YdWs-----gY~~l~~mv~~~GLKl~vvms 171 (578)
....+.+..-++.+++.| +++|.+|.=|--... ...+.|+|. --+++++-+++.|+|+.+++.
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~ 91 (317)
T cd06598 20 YRNWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITE 91 (317)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEc
Confidence 456677888888888876 689999974432221 224456664 467888888999999966554
No 177
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=27.77 E-value=1e+02 Score=32.45 Aligned_cols=52 Identities=19% Similarity=0.121 Sum_probs=37.1
Q ss_pred HHHHHHHHcCcceEEecceeec-cccCCCc-cccchHHHHHHHHHHHcCCc-EEE
Q 008086 117 AGLKALKLLGVEGVELPVWWGV-AEKEAMG-KYNWSGYLAVAEMVEKIGLK-LHV 168 (578)
Q Consensus 117 ~~L~~LK~~GV~GV~vdVWWGi-vE~~~p~-~YdWsgY~~l~~mv~~~GLK-l~v 168 (578)
..|+.||.+||..|.+.|==.. -.-...| ..++..+.+.+++++++|++ +.+
T Consensus 101 e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~ 155 (360)
T TIGR00539 101 EWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISL 155 (360)
T ss_pred HHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 6789999999999999853110 0001123 37899999999999999996 433
No 178
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.74 E-value=7e+02 Score=26.06 Aligned_cols=134 Identities=12% Similarity=0.187 Sum_probs=83.3
Q ss_pred CccccHHHHHHHHHHHHHcCcceEEe---cce-eecc------c------------------cCCCccccchHHHHHHHH
Q 008086 107 NTVNHAKAIAAGLKALKLLGVEGVEL---PVW-WGVA------E------------------KEAMGKYNWSGYLAVAEM 158 (578)
Q Consensus 107 n~~~~~~a~~~~L~~LK~~GV~GV~v---dVW-WGiv------E------------------~~~p~~YdWsgY~~l~~m 158 (578)
..+-..+.|.+-+..|...+...+++ |-| |-+- + ....+.|.=+.++++++.
T Consensus 11 R~~~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~y 90 (326)
T cd06564 11 RKYYSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAY 90 (326)
T ss_pred CCCCCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHH
Confidence 34456788889999999999988885 322 2110 0 123567888999999999
Q ss_pred HHHcCCcEEEEEee--e-----------cCCC---------CCCCCCh---hhHhhhccCCCeeeecCCCCccccccccc
Q 008086 159 VEKIGLKLHVSLCF--H-----------ALKQ---------PKIPLPD---WVSQIGESQSSIFYTDQSGQQFKGCLSLA 213 (578)
Q Consensus 159 v~~~GLKl~vvmsF--H-----------~cg~---------~~IpLP~---WV~~~g~~~pdI~ytD~~G~r~~E~LSl~ 213 (578)
|++.|+.|+|-+-+ | .|.. -++.-|. .+.+.-+.--++| .+ ...|+-+|
T Consensus 91 A~~rgI~vIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f-~~-----~~~~~HiG 164 (326)
T cd06564 91 AKDRGVNIIPEIDSPGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDGF-NP-----KSDTVHIG 164 (326)
T ss_pred HHHcCCeEeccCCCcHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHhc-CC-----CCCEEEec
Confidence 99999999665433 1 0100 0111111 1111111111111 10 15899999
Q ss_pred cCcccccCCCChhHHHHHHHHHHHHhhchhcCCceE
Q 008086 214 VDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTIT 249 (578)
Q Consensus 214 vD~~pvl~GRTpiq~Y~dfm~SF~~~f~~~~g~~I~ 249 (578)
.|+.+.. .+..+.|.+|++...+.++.. |.++.
T Consensus 165 gDE~~~~--~~~~~~~~~f~~~~~~~v~~~-gk~~~ 197 (326)
T cd06564 165 ADEYAGD--AGYAEAFRAYVNDLAKYVKDK-GKTPR 197 (326)
T ss_pred ccccccc--CccHHHHHHHHHHHHHHHHHc-CCeEE
Confidence 9998765 567789999999999888876 55444
No 179
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=27.37 E-value=3.1e+02 Score=29.33 Aligned_cols=86 Identities=9% Similarity=0.215 Sum_probs=53.6
Q ss_pred ccHHHHHHHHHHHHHcC--cceEEecceeeccccCCCccccch-----HHHHHHHHHHHcCCcEEEEEeeecCCCCCCCC
Q 008086 110 NHAKAIAAGLKALKLLG--VEGVELPVWWGVAEKEAMGKYNWS-----GYLAVAEMVEKIGLKLHVSLCFHALKQPKIPL 182 (578)
Q Consensus 110 ~~~~a~~~~L~~LK~~G--V~GV~vdVWWGivE~~~p~~YdWs-----gY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpL 182 (578)
.+.+.+.+-++.+++.| ++++.+|.+|+.-. +.|.|+ ...++++.+++.|+|+ ++..|- .|..
T Consensus 40 ~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~~----~~f~~d~~~FPd~~~~~~~l~~~G~~~--~~~~~P----~v~~ 109 (441)
T PF01055_consen 40 YNQDEVREVIDRYRSNGIPLDVIWIDDDYQDGY----GDFTWDPERFPDPKQMIDELHDQGIKV--VLWVHP----FVSN 109 (441)
T ss_dssp TSHHHHHHHHHHHHHTT--EEEEEE-GGGSBTT----BTT-B-TTTTTTHHHHHHHHHHTT-EE--EEEEES----EEET
T ss_pred CCHHHHHHHHHHHHHcCCCccceeccccccccc----cccccccccccchHHHHHhHhhCCcEE--EEEeec----ccCC
Confidence 44677788888888865 68999999987622 245554 5789999999999998 455542 2222
Q ss_pred Ch----hhHhhhccCCCeeeecCCCCccc
Q 008086 183 PD----WVSQIGESQSSIFYTDQSGQQFK 207 (578)
Q Consensus 183 P~----WV~~~g~~~pdI~ytD~~G~r~~ 207 (578)
.. -..+ + ...++++++.+|....
T Consensus 110 ~~~~~~~~~~-~-~~~~~~v~~~~g~~~~ 136 (441)
T PF01055_consen 110 DSPDYENYDE-A-KEKGYLVKNPDGSPYI 136 (441)
T ss_dssp TTTB-HHHHH-H-HHTT-BEBCTTSSB-E
T ss_pred CCCcchhhhh-H-hhcCceeecccCCccc
Confidence 22 2222 2 2337899999995543
No 180
>PLN02433 uroporphyrinogen decarboxylase
Probab=27.15 E-value=87 Score=32.81 Aligned_cols=77 Identities=10% Similarity=-0.000 Sum_probs=48.3
Q ss_pred HHHHHHHHcCcceEEecceeeccccCCCcccc---chHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhhHhhhccC
Q 008086 117 AGLKALKLLGVEGVELPVWWGVAEKEAMGKYN---WSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQ 193 (578)
Q Consensus 117 ~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Yd---WsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~~~g~~~ 193 (578)
.-+++..++|++.|.+.-=|+-. =+|..|+ |-+.+++++-+++.+-.+ -...|.||.. ++-.++.+ ..
T Consensus 183 ~~~~~~ieaGa~~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~--~~ilh~cG~~--~~~~~~~~---~~ 253 (345)
T PLN02433 183 EYVDYQIDAGAQVVQIFDSWAGH--LSPVDFEEFSKPYLEKIVDEVKARHPDV--PLILYANGSG--GLLERLAG---TG 253 (345)
T ss_pred HHHHHHHHcCCCEEEEecCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEeCCCH--HHHHHHHh---cC
Confidence 44556677999999665435432 3355666 999999999999862122 2345889864 44344444 44
Q ss_pred CCeeeecCC
Q 008086 194 SSIFYTDQS 202 (578)
Q Consensus 194 pdI~ytD~~ 202 (578)
.+++-.|..
T Consensus 254 ~~~i~~d~~ 262 (345)
T PLN02433 254 VDVIGLDWT 262 (345)
T ss_pred CCEEEcCCC
Confidence 467666654
No 181
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=26.96 E-value=50 Score=33.98 Aligned_cols=31 Identities=23% Similarity=0.535 Sum_probs=23.2
Q ss_pred CCccccHHHHHHHHHHHHHcCcceEEecceee
Q 008086 106 ANTVNHAKAIAAGLKALKLLGVEGVELPVWWG 137 (578)
Q Consensus 106 ~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWG 137 (578)
++++..+..+++-.++|+ .|+..||+|||=|
T Consensus 23 g~Ql~~ess~eay~~AL~-~GcR~vElDvwdg 53 (229)
T cd08592 23 GDQLSSESSLEAYARCLR-MGCRCIELDCWDG 53 (229)
T ss_pred CCccCCccCHHHHHHHHH-hCCCEEEEEeecC
Confidence 456666666666666666 9999999999955
No 182
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=26.57 E-value=99 Score=30.16 Aligned_cols=52 Identities=27% Similarity=0.333 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEE
Q 008086 113 KAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHV 168 (578)
Q Consensus 113 ~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~v 168 (578)
..+..+++.+..+|+++|.+-+.++-.+ ..+......++.+.+++.|+++.+
T Consensus 76 ~~~~~~v~~a~~~Ga~~v~~~~~~~~~~----~~~~~~~i~~v~~~~~~~g~~~ii 127 (235)
T cd00958 76 KVLVASVEDAVRLGADAVGVTVYVGSEE----EREMLEELARVAAEAHKYGLPLIA 127 (235)
T ss_pred hhhhcCHHHHHHCCCCEEEEEEecCCch----HHHHHHHHHHHHHHHHHcCCCEEE
Confidence 4455678889999999998888877432 356777888899999999999844
No 183
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=26.27 E-value=84 Score=33.87 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=34.2
Q ss_pred HHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEE
Q 008086 115 IAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHV 168 (578)
Q Consensus 115 ~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~v 168 (578)
+.+.|+.++..|+++|-.+. |.++-....+. . -..++++.++++||+|+|
T Consensus 247 ~~~~l~~i~a~~a~~i~P~~-~~l~~~~~~~~--~-~~~~~v~~Ah~~GL~V~~ 296 (356)
T cd08560 247 WSPSMDELKARGVNIIAPPI-WMLVDPDENGK--I-VPSEYAKAAKAAGLDIIT 296 (356)
T ss_pred HHHHHHHHHhCCccEecCch-hhccccccccc--c-CCHHHHHHHHHcCCEEEE
Confidence 55789999999999876643 33333222222 2 456889999999999944
No 184
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=26.21 E-value=1.1e+02 Score=33.08 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=32.1
Q ss_pred HHHHHHHhCCceEEeeccccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeec
Q 008086 440 AVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSG 492 (578)
Q Consensus 440 ~Ia~mfak~~~~l~ftc~Em~d~eqp~~~~s~Pe~Lv~QV~~aa~~~Gv~v~G 492 (578)
...+..+++|.+.+||||-.-.. ....=-.-+.++.+.|++.|+.|..
T Consensus 18 ~yi~~a~~~Gf~~iFTSL~ipe~-----~~~~~~~~~~~l~~~a~~~~~~v~~ 65 (357)
T PF05913_consen 18 AYIEKAAKYGFKRIFTSLHIPED-----DPEDYLERLKELLKLAKELGMEVIA 65 (357)
T ss_dssp HHHHHHHCTTEEEEEEEE--------------HHHHHHHHHHHHHHCT-EEEE
T ss_pred HHHHHHHHCCCCEEECCCCcCCC-----CHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 44678899999999999865432 2223356788999999999999754
No 185
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=26.18 E-value=1.3e+02 Score=32.47 Aligned_cols=58 Identities=26% Similarity=0.231 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHcCcceEEecc---eeeccccC-----CCccccchHHHHHHHHHHHcCCcEEEE
Q 008086 112 AKAIAAGLKALKLLGVEGVELPV---WWGVAEKE-----AMGKYNWSGYLAVAEMVEKIGLKLHVS 169 (578)
Q Consensus 112 ~~a~~~~L~~LK~~GV~GV~vdV---WWGivE~~-----~p~~YdWsgY~~l~~mv~~~GLKl~vv 169 (578)
.+.|...|++|+..|+|||-+|+ ||=+.+.. ++-+=+=..|.++.+.+|.+.=-+.||
T Consensus 125 kdii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi 190 (300)
T COG2342 125 KDIIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANPLFRVI 190 (300)
T ss_pred HHHHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 35778899999999999998775 44333321 223334455889999998875445444
No 186
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=25.63 E-value=7e+02 Score=26.48 Aligned_cols=97 Identities=9% Similarity=0.109 Sum_probs=52.9
Q ss_pred cccHHHHHHHHHHHHHcCc--ceEEecce--------ee---ccccCC-----Cccccc------hHHHHHHHHHHHcCC
Q 008086 109 VNHAKAIAAGLKALKLLGV--EGVELPVW--------WG---VAEKEA-----MGKYNW------SGYLAVAEMVEKIGL 164 (578)
Q Consensus 109 ~~~~~a~~~~L~~LK~~GV--~GV~vdVW--------WG---ivE~~~-----p~~YdW------sgY~~l~~mv~~~GL 164 (578)
....+.+..-++.+++.|+ ++|.+|.| |. -++..+ -+.++| -..+++++-+++.|+
T Consensus 20 Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~ 99 (340)
T cd06597 20 WDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGV 99 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCC
Confidence 4456778888999999875 88989853 11 111111 112222 246889999999999
Q ss_pred cEEEEEeeecCCCCCCCCChhhHhhhccCCCeeeecCCCCc
Q 008086 165 KLHVSLCFHALKQPKIPLPDWVSQIGESQSSIFYTDQSGQQ 205 (578)
Q Consensus 165 Kl~vvmsFH~cg~~~IpLP~WV~~~g~~~pdI~ytD~~G~r 205 (578)
|+.+++.-|-.-.+...-..+........-++|.+|.+|..
T Consensus 100 kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~ 140 (340)
T cd06597 100 KVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKP 140 (340)
T ss_pred EEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCc
Confidence 99443333222111110011111111233468999998874
No 187
>PRK09875 putative hydrolase; Provisional
Probab=25.59 E-value=2e+02 Score=30.18 Aligned_cols=65 Identities=17% Similarity=0.317 Sum_probs=44.9
Q ss_pred ccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEee--ecCCCCCCCCChh
Q 008086 108 TVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF--HALKQPKIPLPDW 185 (578)
Q Consensus 108 ~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsF--H~cg~~~IpLP~W 185 (578)
.+.+.+...+.|+.+|++|+..| ||+= +.+.|+. =..+.++.++.|+.| |+|+ |. ..-.|.|
T Consensus 29 ~l~~~~~~~~el~~~~~~Gg~ti-Vd~T-----~~g~GRd----~~~l~~is~~tgv~I--v~~TG~y~----~~~~p~~ 92 (292)
T PRK09875 29 RLDQYAFICQEMNDLMTRGVRNV-IEMT-----NRYMGRN----AQFMLDVMRETGINV--VACTGYYQ----DAFFPEH 92 (292)
T ss_pred ccccHHHHHHHHHHHHHhCCCeE-EecC-----CCccCcC----HHHHHHHHHHhCCcE--EEcCcCCC----CccCCHH
Confidence 56777888899999999999887 4432 2233432 347889999999888 5555 32 2236788
Q ss_pred hHh
Q 008086 186 VSQ 188 (578)
Q Consensus 186 V~~ 188 (578)
+.+
T Consensus 93 ~~~ 95 (292)
T PRK09875 93 VAT 95 (292)
T ss_pred Hhc
Confidence 853
No 188
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=25.18 E-value=5.2e+02 Score=27.64 Aligned_cols=108 Identities=17% Similarity=0.125 Sum_probs=69.8
Q ss_pred ccccCCCCCChHHHHHHHHhCCceEE-eeccccCCCCCCCCCCCChHHHHHHHHHHHHhcC--CeeeccccCCCCCcchH
Q 008086 428 GLYNTAKRDGYAAVAEMFAKNSCKMI-LPGMDLSDEHQPRESFSSPESLLAQIRTACNKHG--VEVSGQNSSVTGAPGGF 504 (578)
Q Consensus 428 GyYNt~~rdGY~~Ia~mfak~~~~l~-ftc~Em~d~eqp~~~~s~Pe~Lv~QV~~aa~~~G--v~v~GENAl~~~d~~~~ 504 (578)
+||-+...-.+..-..+++.+|+.=. +. |+....++++..++-|...++++| |.+.-++.- + |
T Consensus 29 ~~~~~~~d~~~~dY~~~~~~~gv~~~V~v--------q~~~~~~D~~~e~~~v~~~~~~~g~~vg~id~~~~---e---~ 94 (279)
T COG3618 29 DYEALRRDYLFEDYLALLKAHGVSGGVLV--------QVNVDPRDNEKELAFVAELAERHGGIVGVIDECRP---E---F 94 (279)
T ss_pred cccccCCCCCHHHHHHHHHhcCcceeEEE--------ecccCccchHHHHHHHHhhHHhhCceEEEEecCCc---h---H
Confidence 78877778889999999999998622 21 233345678999999999999999 444444332 2 4
Q ss_pred HHHHHhccCCCceeeEEEee--cCcccCCCCChhhHHHHHHHhcCCCCCCC
Q 008086 505 EQMKKNLFGENVVDLFTYQR--MGAYFFSPEHFPSFTKFVRNLNQLELHGD 553 (578)
Q Consensus 505 ~qi~~~~~~~~~~~~FTylR--m~~~lf~~~n~~~F~~FVr~m~~~~~~~d 553 (578)
..-++-.. +..+.++--.. +-+..|.. +.|.++|++++...++-|
T Consensus 95 ~a~L~~~~-~~~~~GvR~~l~~~p~~~~~a---~~~r~~~~rL~~~gl~fd 141 (279)
T COG3618 95 AAKLERAR-YPFFRGVRRNLHVVPDGLFEA---PAWRANVERLAKLGLHFD 141 (279)
T ss_pred HHHHHHhc-ccccceeeehhhcCCccchhh---HHHHHHHHHHHhcCCeEE
Confidence 33333322 22244443333 22333333 789999999998877543
No 189
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=25.02 E-value=2.9e+02 Score=25.86 Aligned_cols=77 Identities=14% Similarity=0.186 Sum_probs=46.3
Q ss_pred EEeceeeecCCCCCChh-h---hccccccCCCCCChHHHHHHHHhCCceEEeeccccCCCC---CCCCCCCChHHHHHHH
Q 008086 407 GKIPLIHSWYKTRSHPS-E---LTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEH---QPRESFSSPESLLAQI 479 (578)
Q Consensus 407 ~KV~GIHWwY~t~SHaA-E---LTAGyYNt~~rdGY~~Ia~mfak~~~~l~ftc~Em~d~e---qp~~~~s~Pe~Lv~QV 479 (578)
.++.|+||+|....... . +.-|+ .....-|.++++.|++. +..-+.|++... .|....-+-+.+++.+
T Consensus 11 ~~~~~~~~~~~~~g~~~~~~vv~~hG~--~~~~~~~~~~~~~l~~~---~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l 85 (278)
T TIGR03056 11 VTVGPFHWHVQDMGPTAGPLLLLLHGT--GASTHSWRDLMPPLARS---FRVVAPDLPGHGFTRAPFRFRFTLPSMAEDL 85 (278)
T ss_pred eeECCEEEEEEecCCCCCCeEEEEcCC--CCCHHHHHHHHHHHhhC---cEEEeecCCCCCCCCCccccCCCHHHHHHHH
Confidence 48899999998654321 1 11132 23344588999999874 333445665432 1222234678888888
Q ss_pred HHHHHhcCC
Q 008086 480 RTACNKHGV 488 (578)
Q Consensus 480 ~~aa~~~Gv 488 (578)
.+.....++
T Consensus 86 ~~~i~~~~~ 94 (278)
T TIGR03056 86 SALCAAEGL 94 (278)
T ss_pred HHHHHHcCC
Confidence 888776653
No 190
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=24.94 E-value=92 Score=32.18 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=59.1
Q ss_pred cccccCCCCCChHHHHHHHHhCCce-EEeeccccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccCCCCCc-chH
Q 008086 427 AGLYNTAKRDGYAAVAEMFAKNSCK-MILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAP-GGF 504 (578)
Q Consensus 427 AGyYNt~~rdGY~~Ia~mfak~~~~-l~ftc~Em~d~eqp~~~~s~Pe~Lv~QV~~aa~~~Gv~v~GENAl~~~d~-~~~ 504 (578)
-+|||+--+-|+...++-+++.|++ ++++=+ | + +-...+.++|+++|+..-- ...+ ..-
T Consensus 97 m~Y~N~i~~~G~e~F~~~~~~aGvdgviipDL-------P------~-ee~~~~~~~~~~~gi~~I~-----lv~PtT~~ 157 (263)
T CHL00200 97 FTYYNPVLHYGINKFIKKISQAGVKGLIIPDL-------P------Y-EESDYLISVCNLYNIELIL-----LIAPTSSK 157 (263)
T ss_pred EecccHHHHhCHHHHHHHHHHcCCeEEEecCC-------C------H-HHHHHHHHHHHHcCCCEEE-----EECCCCCH
Confidence 4899998899999999999999998 445522 1 2 2367888999999986321 1111 123
Q ss_pred HHHHHhccCCCceeeEEEe--ecCcccCCCCChhhHHHHHHHhcC
Q 008086 505 EQMKKNLFGENVVDLFTYQ--RMGAYFFSPEHFPSFTKFVRNLNQ 547 (578)
Q Consensus 505 ~qi~~~~~~~~~~~~FTyl--Rm~~~lf~~~n~~~F~~FVr~m~~ 547 (578)
++|.+-+. .-++|-|+ |+|-.=-...--....++++++++
T Consensus 158 eri~~i~~---~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~ 199 (263)
T CHL00200 158 SRIQKIAR---AAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKK 199 (263)
T ss_pred HHHHHHHH---hCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHH
Confidence 44444332 13346665 555332222223445666666654
No 191
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=24.84 E-value=1.6e+02 Score=29.67 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=35.5
Q ss_pred HHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEee
Q 008086 117 AGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (578)
Q Consensus 117 ~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsF 172 (578)
-....||++|+++|.+. .++++|.=+.-.+-++.+.+.||+. |+|.
T Consensus 72 vS~~mLkd~G~~~viiG--------HSERRf~Etdi~~Kv~~a~~~gl~~--IvCi 117 (205)
T TIGR00419 72 ISAEMLKDIGAKGTLIN--------HSERRMKLADIEKKIARLKELGLTS--VVCT 117 (205)
T ss_pred CCHHHHHHcCCCEEEEC--------cccCCCCccHHHHHHHHHHHCCCEE--EEEE
Confidence 35678999999999997 4555666665566667888889886 8887
No 192
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=24.56 E-value=43 Score=35.36 Aligned_cols=59 Identities=14% Similarity=0.100 Sum_probs=34.4
Q ss_pred cccHHHHHHHHHHHHHcCcceEEecce--ee--ccccCCCccccchHHHHHHHHHHHcCCcEEEEEeee
Q 008086 109 VNHAKAIAAGLKALKLLGVEGVELPVW--WG--VAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH 173 (578)
Q Consensus 109 ~~~~~a~~~~L~~LK~~GV~GV~vdVW--WG--ivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH 173 (578)
+|++ +..++|..+|||||..|.= .. .-+...++....=.|..+++++.-.= +..|+|||
T Consensus 253 VNd~----~~~~~l~~~GVDgIiTD~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 315 (316)
T cd08610 253 INEP----WLFSLAWCSGIHSVTTNNIHLLKQLDHPHFFMTPKFYVFMWLLADIISVLF--IVLIFCFH 315 (316)
T ss_pred CCCH----HHHHHHHhCCcCEEEeCCHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHH--HHHHHhcc
Confidence 5665 5667888899999999842 11 12222244444445556666654332 33377777
No 193
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=24.53 E-value=3.1e+02 Score=25.56 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=40.2
Q ss_pred CCceEEEeeecceeeCC-----CccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHc
Q 008086 90 DAVRLFVGLPLDTVSDA-----NTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKI 162 (578)
Q Consensus 90 ~~vpvyVmLPLd~V~~~-----n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~ 162 (578)
++++|.+++--..-... +.-++.+-+++-++.++..|.|||.+|.-|...+.. -++..|.++++.+++.
T Consensus 63 ~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~----~~~~~~~~ll~~lr~~ 136 (210)
T cd00598 63 PGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADN----SDRENFITLLRELRSA 136 (210)
T ss_pred CCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCc----cHHHHHHHHHHHHHHH
Confidence 57777777643322211 111223344555677889999999999645433221 2466777777766664
No 194
>PRK05926 hypothetical protein; Provisional
Probab=24.24 E-value=1e+02 Score=33.33 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcCcceEEecce----eeccccCCCccccchHHHHHHHHHHHcCCcEEEEEee
Q 008086 115 IAAGLKALKLLGVEGVELPVW----WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (578)
Q Consensus 115 ~~~~L~~LK~~GV~GV~vdVW----WGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsF 172 (578)
.+..|++||++|++.+-..-+ .-+-+.-.|++-....+.+..++++++||++-.-|=|
T Consensus 168 ~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~ 229 (370)
T PRK05926 168 VKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATMLC 229 (370)
T ss_pred HHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCceEE
Confidence 356799999999987664311 1112223467778888899999999999999666655
No 195
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=24.24 E-value=5.6e+02 Score=26.41 Aligned_cols=108 Identities=19% Similarity=0.233 Sum_probs=60.2
Q ss_pred HHHHHHHHcCcceEEecceee---ccccC-CCccccchHHHHHHHHHHHcCCcEEEEEeee-cCCCCCCCCChhhHhhhc
Q 008086 117 AGLKALKLLGVEGVELPVWWG---VAEKE-AMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH-ALKQPKIPLPDWVSQIGE 191 (578)
Q Consensus 117 ~~L~~LK~~GV~GV~vdVWWG---ivE~~-~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH-~cg~~~IpLP~WV~~~g~ 191 (578)
.++++....|++.|.+.+==. +..+- .......+-..+.++.+++.|+++++.++.- .|-.-...-|..+.+..+
T Consensus 77 ~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~ 156 (274)
T cd07938 77 RGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAE 156 (274)
T ss_pred HHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHH
Confidence 477888889999877654311 11110 0123455667888999999999999887753 332111123566655322
Q ss_pred cCCCeeeecCCCCccccccccccCcccc---cCCCChhHHHHHHHHHHHHhhc
Q 008086 192 SQSSIFYTDQSGQQFKGCLSLAVDDLPV---LDGKTPIQVYQEFCESFKSSFK 241 (578)
Q Consensus 192 ~~pdI~ytD~~G~r~~E~LSl~vD~~pv---l~GRTpiq~Y~dfm~SF~~~f~ 241 (578)
. ...+|+|.+-+ .+--||.+ ..++.+.+++++.
T Consensus 157 ~----------------~~~~Ga~~i~l~DT~G~~~P~~-v~~lv~~l~~~~~ 192 (274)
T cd07938 157 R----------------LLDLGCDEISLGDTIGVATPAQ-VRRLLEAVLERFP 192 (274)
T ss_pred H----------------HHHcCCCEEEECCCCCccCHHH-HHHHHHHHHHHCC
Confidence 1 11123333322 23345755 4567778887763
No 196
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=24.20 E-value=5.3e+02 Score=26.43 Aligned_cols=63 Identities=8% Similarity=0.144 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhhHh
Q 008086 113 KAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQ 188 (578)
Q Consensus 113 ~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~~ 188 (578)
...+..+++....|++.|.+-+-.. +.+.-.+.++.+++.|+++.+-+++=. ....-|..+.+
T Consensus 91 ~~~~~di~~~~~~g~~~iri~~~~~----------~~~~~~~~i~~ak~~G~~v~~~i~~~~---~~~~~~~~~~~ 153 (275)
T cd07937 91 DVVELFVEKAAKNGIDIFRIFDALN----------DVRNLEVAIKAVKKAGKHVEGAICYTG---SPVHTLEYYVK 153 (275)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecCC----------hHHHHHHHHHHHHHCCCeEEEEEEecC---CCCCCHHHHHH
Confidence 3467889999999999988854222 256677889999999999876555411 12334566665
No 197
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=23.99 E-value=2.1e+02 Score=22.62 Aligned_cols=43 Identities=21% Similarity=0.304 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEE
Q 008086 115 IAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHV 168 (578)
Q Consensus 115 ~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~v 168 (578)
++.-++++|+.|++.|-+- +-. +-.++.++.+.+++.|+++.+
T Consensus 17 ~~~~~~~a~~~g~~~v~iT------Dh~-----~~~~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 17 PEELVKRAKELGLKAIAIT------DHG-----NLFGAVEFYKAAKKAGIKPII 59 (67)
T ss_pred HHHHHHHHHHcCCCEEEEe------eCC-----cccCHHHHHHHHHHcCCeEEE
Confidence 4578899999999999664 322 566778888999999998843
No 198
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=23.97 E-value=2e+02 Score=29.03 Aligned_cols=102 Identities=16% Similarity=0.226 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHcCcceEEe--cceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhhH
Q 008086 110 NHAKAIAAGLKALKLLGVEGVEL--PVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVS 187 (578)
Q Consensus 110 ~~~~a~~~~L~~LK~~GV~GV~v--dVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~ 187 (578)
+..+...+..+..+++|+++|++ |.|+..-+.+ -..+|+++++ ..++ +|+=+|.-+.....|+.-+.
T Consensus 79 ~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~-----l~~~~~~ia~---~~~~---pi~lYn~P~~~g~~ls~~~~ 147 (284)
T cd00950 79 NNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEG-----LYAHFKAIAE---ATDL---PVILYNVPGRTGVNIEPETV 147 (284)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHH-----HHHHHHHHHh---cCCC---CEEEEEChhHhCCCCCHHHH
Q ss_pred hhhccCCCe-eeecCCCC--ccccccccccCcccccCC
Q 008086 188 QIGESQSSI-FYTDQSGQ--QFKGCLSLAVDDLPVLDG 222 (578)
Q Consensus 188 ~~g~~~pdI-~ytD~~G~--r~~E~LSl~vD~~pvl~G 222 (578)
+.-.+.|.+ -++|.+|. +..+++..--+++.++.|
T Consensus 148 ~~L~~~p~v~giK~s~~~~~~~~~~~~~~~~~~~v~~G 185 (284)
T cd00950 148 LRLAEHPNIVGIKEATGDLDRVSELIALCPDDFAVLSG 185 (284)
T ss_pred HHHhcCCCEEEEEECCCCHHHHHHHHHhCCCCeEEEeC
No 199
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=23.81 E-value=1.4e+02 Score=30.42 Aligned_cols=56 Identities=5% Similarity=0.071 Sum_probs=38.8
Q ss_pred HHHHHHHhCCceEEeeccccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccC
Q 008086 440 AVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSS 496 (578)
Q Consensus 440 ~Ia~mfak~~~~l~ftc~Em~d~eqp~~~~s~Pe~Lv~QV~~aa~~~Gv~v~GENAl 496 (578)
.+++|+ .+|.+.+++|+.-..-...---..--++++..+....+++||.++|||.-
T Consensus 125 ~l~e~i-~~Gf~aiIv~v~~~gL~~~~LGr~id~~~~~~L~~l~~~~gid~~GEgGE 180 (222)
T TIGR00289 125 KLMYEV-AEKFEVIIVSVSAMGLDESWLGRRIDKECIDDLKRLNEKYGIHLAFEGGE 180 (222)
T ss_pred HHHHHH-HcCCeEEEEEEccCCCChHHcCCccCHHHHHHHHHHHhhcCccccCCCce
Confidence 355665 79999999998644221100112233578899999999999999999964
No 200
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=23.60 E-value=78 Score=34.49 Aligned_cols=51 Identities=22% Similarity=0.217 Sum_probs=33.7
Q ss_pred HHHHHHHc-CcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEee
Q 008086 118 GLKALKLL-GVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (578)
Q Consensus 118 ~L~~LK~~-GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsF 172 (578)
.|..+++. ||+||.....+--. ...++-...+++-+.++++||++-||=|+
T Consensus 16 ~l~~irQ~~Gv~giV~al~~~p~----g~~W~~e~i~~~k~~ie~~GL~~~vIEsv 67 (351)
T PF03786_consen 16 TLWDIRQQPGVTGIVTALHDIPN----GEVWDYEEIRALKERIEAAGLTLSVIESV 67 (351)
T ss_dssp -HHHHCTSTTEEEEEE--SSS-T----TS---HHHHHHHHHHHHCTT-EEEEEES-
T ss_pred hHHHHHHhcCCCCeeeCCCCCCC----CCCCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 57778886 99999988765222 23456667888999999999999998765
No 201
>PF04187 DUF399: Protein of unknown function, DUF399; InterPro: IPR007314 No function is known for any member of this family.; PDB: 2G5G_X.
Probab=23.43 E-value=56 Score=32.37 Aligned_cols=31 Identities=16% Similarity=0.443 Sum_probs=20.2
Q ss_pred ccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhhHh
Q 008086 147 YNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQ 188 (578)
Q Consensus 147 YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~~ 188 (578)
|+|+.|+.+++.+++.|+++.+ +-+|.-+..
T Consensus 86 ~~~~~Y~pl~~~Ar~~~ipviA-----------~N~pr~~~~ 116 (213)
T PF04187_consen 86 NDWALYRPLVEFARENGIPVIA-----------LNVPRELVR 116 (213)
T ss_dssp --GGGTHHHHHHHHTSS--EEE-----------EE--HHHHH
T ss_pred CchHHHHHHHHHHHHCCCCEEE-----------ecCCHHHHH
Confidence 5799999999999999999833 247776555
No 202
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=23.43 E-value=7.9e+02 Score=25.85 Aligned_cols=89 Identities=9% Similarity=0.096 Sum_probs=54.0
Q ss_pred cccHHHHHHHHHHHHHcC--cceEEecceeeccccCCCccccch-----HHHHHHHHHHHcCCcEEEEEeeecCCCCCCC
Q 008086 109 VNHAKAIAAGLKALKLLG--VEGVELPVWWGVAEKEAMGKYNWS-----GYLAVAEMVEKIGLKLHVSLCFHALKQPKIP 181 (578)
Q Consensus 109 ~~~~~a~~~~L~~LK~~G--V~GV~vdVWWGivE~~~p~~YdWs-----gY~~l~~mv~~~GLKl~vvmsFH~cg~~~Ip 181 (578)
.+..+.+..-++.+++.| ++.|.+|.=|- .+.+.|+|. --+++++-+++.|+|+ ++..|-.-..+-.
T Consensus 20 y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~----~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~--~~~~~P~v~~~~~ 93 (339)
T cd06603 20 YKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT----DGKRYFTWDKKKFPDPEKMQEKLASKGRKL--VTIVDPHIKRDDG 93 (339)
T ss_pred CCCHHHHHHHHHHHHHcCCCceEEEEChHHh----CCCCceEeCcccCCCHHHHHHHHHHCCCEE--EEEecCceecCCC
Confidence 445667777788888765 58888887442 234556654 3467888888999998 5555432111101
Q ss_pred CChhhHhhhccCCCeeeecCCCCcc
Q 008086 182 LPDWVSQIGESQSSIFYTDQSGQQF 206 (578)
Q Consensus 182 LP~WV~~~g~~~pdI~ytD~~G~r~ 206 (578)
.|.. +++. ..+.+.++.+|...
T Consensus 94 ~~~y--~e~~-~~g~~vk~~~g~~~ 115 (339)
T cd06603 94 YYVY--KEAK-DKGYLVKNSDGGDF 115 (339)
T ss_pred CHHH--HHHH-HCCeEEECCCCCEE
Confidence 2332 2333 33789999988653
No 203
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=23.41 E-value=3.5e+02 Score=28.13 Aligned_cols=106 Identities=19% Similarity=0.239 Sum_probs=61.5
Q ss_pred HHHHHHHHcCcceEEecceeeccccCCCcc------ccchHHHHHHHHHHHcCCcEEEEEeee-cCCCCCCCCChhhHhh
Q 008086 117 AGLKALKLLGVEGVELPVWWGVAEKEAMGK------YNWSGYLAVAEMVEKIGLKLHVSLCFH-ALKQPKIPLPDWVSQI 189 (578)
Q Consensus 117 ~~L~~LK~~GV~GV~vdVWWGivE~~~p~~------YdWsgY~~l~~mv~~~GLKl~vvmsFH-~cg~~~IpLP~WV~~~ 189 (578)
.++++..++|++.|.+-+ .+-|...-.+ -.+.-..+.++.+++.|+++++.+|+- .|-.-...-|+.+.+.
T Consensus 83 ~~ie~A~~~g~~~v~i~~--~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~ 160 (287)
T PRK05692 83 KGLEAALAAGADEVAVFA--SASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADV 160 (287)
T ss_pred HHHHHHHHcCCCEEEEEE--ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHH
Confidence 466777788999887764 2222111112 245568889999999999999888863 2211112246676664
Q ss_pred hccCCCeeeecCCCCccccccccccCcccc---cCCCChhHHHHHHHHHHHHhhc
Q 008086 190 GESQSSIFYTDQSGQQFKGCLSLAVDDLPV---LDGKTPIQVYQEFCESFKSSFK 241 (578)
Q Consensus 190 g~~~pdI~ytD~~G~r~~E~LSl~vD~~pv---l~GRTpiq~Y~dfm~SF~~~f~ 241 (578)
.+. ....|+|.+-+ .+--+|.++ .+.++.+++++.
T Consensus 161 ~~~----------------~~~~G~d~i~l~DT~G~~~P~~v-~~lv~~l~~~~~ 198 (287)
T PRK05692 161 AER----------------LFALGCYEISLGDTIGVGTPGQV-RAVLEAVLAEFP 198 (287)
T ss_pred HHH----------------HHHcCCcEEEeccccCccCHHHH-HHHHHHHHHhCC
Confidence 322 22233443322 122357554 567888888764
No 204
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=23.32 E-value=54 Score=34.30 Aligned_cols=58 Identities=28% Similarity=0.306 Sum_probs=43.3
Q ss_pred HHHHHHHHcCcceEEecceeeccccCCCcccc--chHHHHH-HHHHHHcCCcEEEEEeeecC
Q 008086 117 AGLKALKLLGVEGVELPVWWGVAEKEAMGKYN--WSGYLAV-AEMVEKIGLKLHVSLCFHAL 175 (578)
Q Consensus 117 ~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Yd--WsgY~~l-~~mv~~~GLKl~vvmsFH~c 175 (578)
.+|.+|+..||+.|-..-.|= .+...++.|- |+-...+ ..-++++|||+++-+..|--
T Consensus 15 eDlekMa~sGI~~Vit~AhdP-~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr 75 (254)
T COG1099 15 EDLEKMALSGIREVITLAHDP-YPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHPR 75 (254)
T ss_pred HHHHHHHHhChhhhhhcccCC-CCcccHHHHHHHHHHHHccchhhHHhhCceeeEEeccCCC
Confidence 489999999999999888887 6655566542 3333333 34578999999999999953
No 205
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=23.29 E-value=3.8e+02 Score=28.34 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhhHhhhc
Q 008086 112 AKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGE 191 (578)
Q Consensus 112 ~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~~~g~ 191 (578)
...+++=++.+|++||+||-++ +--++=+. ++.+.++++||+. |.=. ..-..+.++.++.+
T Consensus 108 ~~Gie~F~~~~~~~GvdGlivp----------DLP~ee~~--~~~~~~~~~gi~~--I~lv-----aPtt~~~rl~~i~~ 168 (265)
T COG0159 108 NYGIEKFLRRAKEAGVDGLLVP----------DLPPEESD--ELLKAAEKHGIDP--IFLV-----APTTPDERLKKIAE 168 (265)
T ss_pred HhhHHHHHHHHHHcCCCEEEeC----------CCChHHHH--HHHHHHHHcCCcE--EEEe-----CCCCCHHHHHHHHH
Q ss_pred cC-CCeeeecCCCCc
Q 008086 192 SQ-SSIFYTDQSGQQ 205 (578)
Q Consensus 192 ~~-pdI~ytD~~G~r 205 (578)
.- .-|+|..+.|..
T Consensus 169 ~a~GFiY~vs~~GvT 183 (265)
T COG0159 169 AASGFIYYVSRMGVT 183 (265)
T ss_pred hCCCcEEEEeccccc
No 206
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=23.25 E-value=40 Score=35.23 Aligned_cols=104 Identities=21% Similarity=0.188 Sum_probs=0.0
Q ss_pred hhcceeeeccccccccCC-CCCCCCCCCCCCCCCCCCCceEEEeeecceeeCCCccccHHHHHHHHHHHHH-cCcceEEe
Q 008086 55 RKAQLRFCTKASVQSQPL-PSDRDSGPLSSARPKSLDAVRLFVGLPLDTVSDANTVNHAKAIAAGLKALKL-LGVEGVEL 132 (578)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vpvyVmLPLd~V~~~n~~~~~~a~~~~L~~LK~-~GV~GV~v 132 (578)
.|.||.+.+-+.++..+. +.+......+-.+-....+.+.-||.||.-=+--.+..+.+.+...||+||- +--.|+.
T Consensus 59 ek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~~vr~~~lv~AlkaLkpil~~~gi~- 137 (272)
T COG4130 59 EKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGTAVRREDLVEALKALKPILDEYGIT- 137 (272)
T ss_pred HHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCcccchHHHHHHHHHhhHHHHHhCcc-
Q ss_pred cceeeccccCCCccccchHHHHHHHHHHHcC
Q 008086 133 PVWWGVAEKEAMGKYNWSGYLAVAEMVEKIG 163 (578)
Q Consensus 133 dVWWGivE~~~p~~YdWsgY~~l~~mv~~~G 163 (578)
|+|||-|-..-.-..--+.++.++.+|
T Consensus 138 ----GLVEPLGF~~csLRsk~eA~~aI~aa~ 164 (272)
T COG4130 138 ----GLVEPLGFRVCSLRSKAEAAEAIRAAG 164 (272)
T ss_pred ----ccccccCchhhhhhhHHHHHHHHHHhC
No 207
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=23.16 E-value=1.9e+02 Score=28.59 Aligned_cols=57 Identities=16% Similarity=0.199 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeecC
Q 008086 112 AKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL 175 (578)
Q Consensus 112 ~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~c 175 (578)
.+++.+.+++||+ ++|-|-+-.=||.-....| ...-+++++-+-+.|..+ |++-|..
T Consensus 159 ~~~i~~~i~~lr~-~~D~vIv~~H~G~e~~~~p----~~~~~~~A~~l~~~G~Dv--IiG~H~H 215 (239)
T smart00854 159 REKILADIARARK-KADVVIVSLHWGVEYQYEP----TDEQRELAHALIDAGADV--VIGHHPH 215 (239)
T ss_pred HHHHHHHHHHHhc-cCCEEEEEecCccccCCCC----CHHHHHHHHHHHHcCCCE--EEcCCCC
Confidence 5788899999997 7999999999997433223 222356666666689877 8888864
No 208
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=23.03 E-value=1.1e+02 Score=31.84 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=47.8
Q ss_pred HHHHHHHH---HcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeecCC----------CCCCCC
Q 008086 116 AAGLKALK---LLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALK----------QPKIPL 182 (578)
Q Consensus 116 ~~~L~~LK---~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg----------~~~IpL 182 (578)
+.++++|| .+|++.+..- =-||-..|.+..+.+++.|+++-++.++=-+. -|.|.+
T Consensus 148 ~~d~~~L~~Ki~aGA~f~iTQ-----------~~Fd~~~~~~f~~~~~~~gi~~PIi~GI~pi~s~~~~~~~~~~~Gi~v 216 (281)
T TIGR00677 148 ELDLKYLKEKVDAGADFIITQ-----------LFYDVDNFLKFVNDCRAIGIDCPIVPGIMPINNYASFLRRAKWSKTKI 216 (281)
T ss_pred HHHHHHHHHHHHcCCCEeecc-----------ceecHHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHhcCCCCC
Confidence 34455554 4999987653 35788999999999999998886666554333 278999
Q ss_pred ChhhHhhhc
Q 008086 183 PDWVSQIGE 191 (578)
Q Consensus 183 P~WV~~~g~ 191 (578)
|.|+.+.-+
T Consensus 217 P~~l~~~l~ 225 (281)
T TIGR00677 217 PQEIMSRLE 225 (281)
T ss_pred CHHHHHHHH
Confidence 999998644
No 209
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=23.01 E-value=2.2e+02 Score=30.30 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=57.8
Q ss_pred HHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhhHhhhc----c
Q 008086 117 AGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGE----S 192 (578)
Q Consensus 117 ~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~~~g~----~ 192 (578)
.+|+.....||+.|.+..-..-. .--.+.++.+++.|+++.+.+.. ..-.-|.-+.+..+ .
T Consensus 91 ~dl~~a~~~gvd~iri~~~~~e~----------d~~~~~i~~ak~~G~~v~~~l~~-----s~~~~~e~l~~~a~~~~~~ 155 (333)
T TIGR03217 91 HDLKAAYDAGARTVRVATHCTEA----------DVSEQHIGMARELGMDTVGFLMM-----SHMTPPEKLAEQAKLMESY 155 (333)
T ss_pred HHHHHHHHCCCCEEEEEeccchH----------HHHHHHHHHHHHcCCeEEEEEEc-----ccCCCHHHHHHHHHHHHhc
Confidence 57899999999999987643322 23579999999999998765543 12234555554321 1
Q ss_pred CCC-eeeecCCCCccccccccccCcccccCCCChhHHHHHHHHHHHHhhc
Q 008086 193 QSS-IFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFK 241 (578)
Q Consensus 193 ~pd-I~ytD~~G~r~~E~LSl~vD~~pvl~GRTpiq~Y~dfm~SF~~~f~ 241 (578)
-++ |.++|-.|. -|| +...+..+.+++++.
T Consensus 156 Ga~~i~i~DT~G~------------------~~P-~~v~~~v~~l~~~l~ 186 (333)
T TIGR03217 156 GADCVYIVDSAGA------------------MLP-DDVRDRVRALKAVLK 186 (333)
T ss_pred CCCEEEEccCCCC------------------CCH-HHHHHHHHHHHHhCC
Confidence 233 445555553 345 445677778887765
No 210
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=22.92 E-value=3.1e+02 Score=31.69 Aligned_cols=51 Identities=10% Similarity=0.048 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEee
Q 008086 112 AKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (578)
Q Consensus 112 ~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsF 172 (578)
.+.++..+++....|++.|.+-.-..-+ .--...++.++++|+.+++.+|+
T Consensus 90 ddvv~~~v~~a~~~Gvd~irif~~lnd~----------~n~~~~i~~ak~~G~~v~~~i~~ 140 (582)
T TIGR01108 90 DDVVERFVKKAVENGMDVFRIFDALNDP----------RNLQAAIQAAKKHGAHAQGTISY 140 (582)
T ss_pred hhhHHHHHHHHHHCCCCEEEEEEecCcH----------HHHHHHHHHHHHcCCEEEEEEEe
Confidence 3456788999999999988876543333 34678889999999999988876
No 211
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.56 E-value=1.9e+02 Score=28.44 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCcceEEecceeeccccCCCccccc--hHHHHHHHHHHHcCCcEEEEEeeec
Q 008086 113 KAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNW--SGYLAVAEMVEKIGLKLHVSLCFHA 174 (578)
Q Consensus 113 ~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdW--sgY~~l~~mv~~~GLKl~vvmsFH~ 174 (578)
+.++..++..+.+|++.|.+.-+-..-+...+..+++ ...+++.+++++.|+++ .+=+|.
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l--~lE~~~ 155 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML--AVEIMD 155 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE--EEEecC
Confidence 4567888889999999998742100011111111111 35788999999999888 666653
No 212
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=22.54 E-value=3.1e+02 Score=33.24 Aligned_cols=64 Identities=27% Similarity=0.223 Sum_probs=44.8
Q ss_pred CCccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccc-------------cchHHHHHHHHHHHcCCcEEEEEee
Q 008086 106 ANTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKY-------------NWSGYLAVAEMVEKIGLKLHVSLCF 172 (578)
Q Consensus 106 ~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Y-------------dWsgY~~l~~mv~~~GLKl~vvmsF 172 (578)
+.+++ .+.+.|..|+.+||+.|.+.=-+--.. .+...| ....++++++.+++.|++|.+=+-+
T Consensus 12 ~~tf~---~~~~~L~YL~~LGv~~V~lsPi~~a~~-gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 12 GFTFD---DAAALLPYLKSLGVSHLYLSPILTAVP-GSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CCCHH---HHHHhhHHHHHcCCCEEEeCcCccCCC-CCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 44454 678899999999999997755432211 112223 3778999999999999999665555
Q ss_pred e
Q 008086 173 H 173 (578)
Q Consensus 173 H 173 (578)
.
T Consensus 88 N 88 (825)
T TIGR02401 88 N 88 (825)
T ss_pred c
Confidence 3
No 213
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=22.41 E-value=1.2e+02 Score=31.59 Aligned_cols=50 Identities=14% Similarity=0.178 Sum_probs=37.9
Q ss_pred HHHHHHHHcCcceEEecce-eeccccCCCccccchHHHHHHHHHHHcCCcE
Q 008086 117 AGLKALKLLGVEGVELPVW-WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKL 166 (578)
Q Consensus 117 ~~L~~LK~~GV~GV~vdVW-WGivE~~~p~~YdWsgY~~l~~mv~~~GLKl 166 (578)
.++++.|+.|++.|++.-= +.-.-.++..+-.++-|...++.+++.||+|
T Consensus 135 ~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~~i~~aa~~A~~lGL~V 185 (237)
T TIGR00559 135 DQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQRIVKASVHAHSLGLKV 185 (237)
T ss_pred HHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEE
Confidence 6889999999999998643 3322222233456889999999999999998
No 214
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=22.14 E-value=3.8e+02 Score=27.93 Aligned_cols=87 Identities=13% Similarity=0.157 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHcC--cceEEecceeeccccCCCccccch-----HHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCCh
Q 008086 112 AKAIAAGLKALKLLG--VEGVELPVWWGVAEKEAMGKYNWS-----GYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPD 184 (578)
Q Consensus 112 ~~a~~~~L~~LK~~G--V~GV~vdVWWGivE~~~p~~YdWs-----gY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~ 184 (578)
.+.+..-++.+++.| +|.|.+|.=|-.-+....+.|+|. .-+++++-+++.|+|+ ++..|-+-.+.- |.
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~--~~~i~P~i~~~~--~~ 103 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRL--APNIKPGLLQDH--PR 103 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEE--EEEeCCcccCCC--HH
Confidence 566777888888877 478888742322221112335554 3678888889999999 555543321211 22
Q ss_pred hhHhhhccCCCeeeecCCCCc
Q 008086 185 WVSQIGESQSSIFYTDQSGQQ 205 (578)
Q Consensus 185 WV~~~g~~~pdI~ytD~~G~r 205 (578)
-+++.+ -+.|.++.+|..
T Consensus 104 --y~e~~~-~g~~v~~~~g~~ 121 (317)
T cd06599 104 --YKELKE-AGAFIKPPDGRE 121 (317)
T ss_pred --HHHHHH-CCcEEEcCCCCC
Confidence 233333 378888887753
No 215
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=22.04 E-value=1.4e+02 Score=32.41 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCcceEEecceeecccc----CCCccccchHHHHHHHHHHHcCCcEEEEEee
Q 008086 115 IAAGLKALKLLGVEGVELPVWWGVAEK----EAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (578)
Q Consensus 115 ~~~~L~~LK~~GV~GV~vdVWWGivE~----~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsF 172 (578)
++..|++||.+|.+.+...-===+.|. -.|.+-++....++.+.+.+.|++-...|-+
T Consensus 160 ~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~ 221 (370)
T COG1060 160 YEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLL 221 (370)
T ss_pred HHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEE
Confidence 456699999999999876533223333 4589999999999999999999998887766
No 216
>PTZ00445 p36-lilke protein; Provisional
Probab=21.97 E-value=2.3e+02 Score=29.29 Aligned_cols=61 Identities=10% Similarity=0.124 Sum_probs=46.2
Q ss_pred CccccHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccch------------HHHHHHHHHHHcCCcEE
Q 008086 107 NTVNHAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWS------------GYLAVAEMVEKIGLKLH 167 (578)
Q Consensus 107 n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWs------------gY~~l~~mv~~~GLKl~ 167 (578)
+.++..++...-.+.||+.||..|-+|.==-++...+.|-.++. ..+++++.+++.|++|.
T Consensus 23 ~~~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~ 95 (219)
T PTZ00445 23 DHLNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKIS 95 (219)
T ss_pred ccCCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEE
Confidence 35566677777778899999999999975556665555555553 47889999999999993
No 217
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=21.90 E-value=68 Score=33.31 Aligned_cols=104 Identities=15% Similarity=0.158 Sum_probs=57.3
Q ss_pred ccceeeeecccchhhhhhcceeeeccccccccCCCCCCCCCCCCCCCCCCCCCceEEEeeecceeeCCCccccHHHHHHH
Q 008086 39 FVNRVSFLGQNRSANLRKAQLRFCTKASVQSQPLPSDRDSGPLSSARPKSLDAVRLFVGLPLDTVSDANTVNHAKAIAAG 118 (578)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpvyVmLPLd~V~~~n~~~~~~a~~~~ 118 (578)
-|..||+.-+.+.....+.|+.+..+...-.+.+. .-...+++|.+.+ +-. ..+
T Consensus 84 kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~------------~L~~~gIrvSLFi-------DP~-------~~q 137 (239)
T PF03740_consen 84 KPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIK------------RLKDAGIRVSLFI-------DPD-------PEQ 137 (239)
T ss_dssp --SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHH------------HHHHTT-EEEEEE--------S--------HHH
T ss_pred CcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHH------------HHHhCCCEEEEEe-------CCC-------HHH
Confidence 46778887777777777777666533311111100 0011256655543 111 268
Q ss_pred HHHHHHcCcceEEecce-eeccccCCCcccc--chHHHHHHHHHHHcCCcEEE
Q 008086 119 LKALKLLGVEGVELPVW-WGVAEKEAMGKYN--WSGYLAVAEMVEKIGLKLHV 168 (578)
Q Consensus 119 L~~LK~~GV~GV~vdVW-WGivE~~~p~~Yd--WsgY~~l~~mv~~~GLKl~v 168 (578)
+++.|.+|++.|++.-= +.-........-. ++-|.+.++.+++.||+|++
T Consensus 138 i~~A~~~Gad~VELhTG~yA~a~~~~~~~~~ell~~l~~aa~~a~~lGL~VnA 190 (239)
T PF03740_consen 138 IEAAKELGADRVELHTGPYANAFDDAEEAEEELLERLRDAARYAHELGLGVNA 190 (239)
T ss_dssp HHHHHHTT-SEEEEETHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHcCCCEEEEehhHhhhhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEec
Confidence 89999999999999854 4444322112222 78999999999999999843
No 218
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=21.87 E-value=4e+02 Score=28.72 Aligned_cols=114 Identities=15% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCcceEEecceeeccccCCCc----------cccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCC
Q 008086 113 KAIAAGLKALKLLGVEGVELPVWWGVAEKEAMG----------KYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPL 182 (578)
Q Consensus 113 ~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~----------~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpL 182 (578)
++...+++++..+|++.|.+-+ +.++- ...+....+.++.+++.|+++.+..-. ..-.-
T Consensus 75 r~~~~di~~a~~~g~~~i~i~~------~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed-----~~r~~ 143 (378)
T PRK11858 75 RAVKSDIDASIDCGVDAVHIFI------ATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAED-----ASRTD 143 (378)
T ss_pred ccCHHHHHHHHhCCcCEEEEEE------cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEecc-----CCCCC
Q ss_pred ChhhHhhhccCCCeeeecCCCCccccccccccCcccc---cCCCChhHHHHHHHHHHHHhhchhcCCceEeecccccccc
Q 008086 183 PDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPV---LDGKTPIQVYQEFCESFKSSFKPFMGTTITVRSFDFKQCQ 259 (578)
Q Consensus 183 P~WV~~~g~~~pdI~ytD~~G~r~~E~LSl~vD~~pv---l~GRTpiq~Y~dfm~SF~~~f~~~~g~~I~~~~~~~~~~~ 259 (578)
|+.+.+..+. ....|+|.+-+ .+.-|| ..+.++.+.+++.+ +..|-
T Consensus 144 ~~~l~~~~~~----------------~~~~Ga~~I~l~DT~G~~~P-~~v~~lv~~l~~~~----~~~l~---------- 192 (378)
T PRK11858 144 LDFLIEFAKA----------------AEEAGADRVRFCDTVGILDP-FTMYELVKELVEAV----DIPIE---------- 192 (378)
T ss_pred HHHHHHHHHH----------------HHhCCCCEEEEeccCCCCCH-HHHHHHHHHHHHhc----CCeEE----------
Q ss_pred ccccccccc
Q 008086 260 VHTISDLHL 268 (578)
Q Consensus 260 ~~~~~~~~~ 268 (578)
+|+=.|+.+
T Consensus 193 ~H~Hnd~Gl 201 (378)
T PRK11858 193 VHCHNDFGM 201 (378)
T ss_pred EEecCCcCH
No 219
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=21.73 E-value=5e+02 Score=24.87 Aligned_cols=136 Identities=13% Similarity=0.037 Sum_probs=73.4
Q ss_pred HHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhhHhhhccCCCee
Q 008086 118 GLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIGESQSSIF 197 (578)
Q Consensus 118 ~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~~~g~~~pdI~ 197 (578)
++.+||+.||++|.+=+.-| . .|.=..|.+-.+-|+++||++-+..=++.+..+. .==.++.+
T Consensus 16 d~~~vk~~gi~fviiKateG------~-~~~D~~~~~~~~~a~~~Gl~vG~Yhy~~~~~~~~-~qA~~f~~--------- 78 (191)
T cd06413 16 DWARVRAQGVSFAYIKATEG------G-DHVDKRFAENWRGARAAGLPRGAYHFFTFCRSGA-EQAANFIR--------- 78 (191)
T ss_pred CHHHHHhCCCcEEEEEEcCC------C-CccCHHHHHHHHHHHHcCCceEEEEEEecCCCHH-HHHHHHHH---------
Confidence 58899999999999987533 2 2444677788889999999987776665543210 00012211
Q ss_pred eecCCCCccccccccccCcccccCCC--ChhHHHHHHHHHHHHhhchhcCC-ceEeeccccccccccccccccccccccc
Q 008086 198 YTDQSGQQFKGCLSLAVDDLPVLDGK--TPIQVYQEFCESFKSSFKPFMGT-TITVRSFDFKQCQVHTISDLHLLWDTDV 274 (578)
Q Consensus 198 ytD~~G~r~~E~LSl~vD~~pvl~GR--Tpiq~Y~dfm~SF~~~f~~~~g~-~I~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (578)
.-+.. +.-+-+++|-+.--... .......+.++.|.+.++...|. .++-.+-.|-.+..-+.-.-+-||-.+-
T Consensus 79 ---~~~~~-~~~~~~~lD~E~~~~~~~~~~~~~~~~~~~~f~~~v~~~~G~~~~iY~~~~~~~~~~~~~~~~~~lWiA~Y 154 (191)
T cd06413 79 ---NVPKD-PGALPPVVDVEWNGNSATCPSAEEVLAELQVFLDALEAHYGKRPIIYTTYDFYDDYLKGEFPDYPLWIRSV 154 (191)
T ss_pred ---hcCCC-CCcCCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCeEEEeCHHHHHHhcccccCCCceEEEcc
Confidence 11111 11222344444321111 23456677888888888876664 3333344443332222122334564433
No 220
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=21.56 E-value=1.6e+02 Score=29.97 Aligned_cols=59 Identities=8% Similarity=0.157 Sum_probs=42.5
Q ss_pred hHHHHHHHHhCCceEEeeccccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccC
Q 008086 438 YAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSS 496 (578)
Q Consensus 438 Y~~Ia~mfak~~~~l~ftc~Em~d~eqp~~~~s~Pe~Lv~QV~~aa~~~Gv~v~GENAl 496 (578)
...+++.|-.+|.+.+++|+.-..-...---..-=++++..+.+...+.||.++|||.-
T Consensus 123 ~~~ll~e~i~~G~~aiIv~v~a~gL~~~~LGr~i~~e~i~~L~~~~~~~gvd~~GEgGE 181 (223)
T TIGR00290 123 PEKLMEEFVEEKFEARIIAVAAEGLDESWLGRRIDRKMIDELKKLNEKYGIHPAGEGGE 181 (223)
T ss_pred HHHHHHHHHHcCCeEEEEEEecCCCChHHcCCcccHHHHHHHHHHHhccCCCccCCCce
Confidence 46788888899999999998654322100111223578888888889999999999974
No 221
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=21.52 E-value=2.5e+02 Score=29.92 Aligned_cols=60 Identities=23% Similarity=0.359 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCcceEEecceeeccccCCC----------ccccchHHHHHHHHHHHcCCc-EEEEEeeecCCCCCCCCCh
Q 008086 116 AAGLKALKLLGVEGVELPVWWGVAEKEAM----------GKYNWSGYLAVAEMVEKIGLK-LHVSLCFHALKQPKIPLPD 184 (578)
Q Consensus 116 ~~~L~~LK~~GV~GV~vdVWWGivE~~~p----------~~YdWsgY~~l~~mv~~~GLK-l~vvmsFH~cg~~~IpLP~ 184 (578)
..++++||++||+.+.+.+ |.-.+ .+-+|..-.+..+.++++|++ +-.. .-+-||.
T Consensus 162 ~e~~~~Lk~aGv~r~~i~l-----ET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g--------~i~Gl~e 228 (366)
T TIGR02351 162 EEEYKKLVEAGLDGVTVYQ-----ETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIG--------ALLGLDD 228 (366)
T ss_pred HHHHHHHHHcCCCEEEEEe-----ecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeecee--------EEEeCch
Confidence 4688999999999999853 32212 233566667889999999997 4222 2234677
Q ss_pred hhHh
Q 008086 185 WVSQ 188 (578)
Q Consensus 185 WV~~ 188 (578)
|-.+
T Consensus 229 ~~~d 232 (366)
T TIGR02351 229 WRTD 232 (366)
T ss_pred hHHH
Confidence 7665
No 222
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=21.36 E-value=1.2e+02 Score=32.77 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEE
Q 008086 114 AIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHV 168 (578)
Q Consensus 114 a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~v 168 (578)
.+.-..+.++.+|.|+|.+-|+|+.-+...-..-......++.+-|++.||-+.+
T Consensus 107 ~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlll 161 (340)
T PRK12858 107 LDNWSVRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFL 161 (340)
T ss_pred cccccHHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEE
Confidence 3344578899999999999999995433212566788889999999999999844
No 223
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=21.28 E-value=1.8e+02 Score=31.14 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCcceEEecceeeccccCCC----------ccccchHHHHHHHHHHHcCCc-E
Q 008086 116 AAGLKALKLLGVEGVELPVWWGVAEKEAM----------GKYNWSGYLAVAEMVEKIGLK-L 166 (578)
Q Consensus 116 ~~~L~~LK~~GV~GV~vdVWWGivE~~~p----------~~YdWsgY~~l~~mv~~~GLK-l 166 (578)
..+++.||++||++|++.+ |...+ ...+|..-.+..+.++++|++ +
T Consensus 163 ~e~l~~Lk~aGv~r~~i~l-----ET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v 219 (371)
T PRK09240 163 EEEYAELVELGLDGVTVYQ-----ETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKI 219 (371)
T ss_pred HHHHHHHHHcCCCEEEEEE-----ecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 4688999999999999763 33212 245777778889999999996 6
No 224
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=21.26 E-value=71 Score=33.41 Aligned_cols=56 Identities=21% Similarity=0.391 Sum_probs=34.4
Q ss_pred CCccccHHHHHHHHHHHHHcCcceEEecceeec-cccCCCccc-cch-----HHHHHHHHHHHcCCc
Q 008086 106 ANTVNHAKAIAAGLKALKLLGVEGVELPVWWGV-AEKEAMGKY-NWS-----GYLAVAEMVEKIGLK 165 (578)
Q Consensus 106 ~n~~~~~~a~~~~L~~LK~~GV~GV~vdVWWGi-vE~~~p~~Y-dWs-----gY~~l~~mv~~~GLK 165 (578)
++++..+..+++-.++|+ .|+..||+|||=|- -|+ -.| ++. .++++++.|++.+.+
T Consensus 23 g~Ql~~~ss~~~y~~aL~-~GcR~vElD~w~g~~gep---vV~Hg~tlts~i~f~dv~~~I~~~aF~ 85 (260)
T cd08597 23 EDQLRGPSSVEGYVRALQ-RGCRCVELDCWDGPNGEP---VIYHGHTLTSKISFRSVIEAINEYAFV 85 (260)
T ss_pred CCeecCccCHHHHHHHHH-hCCCEEEEEeEcCCCCCE---EEEeCCccccceEHHHHHHHHHHHhcc
Confidence 456666666776667774 99999999999541 121 111 112 355666666666544
No 225
>PLN02784 alpha-amylase
Probab=21.26 E-value=2.1e+02 Score=34.93 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHcCcceEEecceeeccccCCCcccc---c----------hHHHHHHHHHHHcCCcEEEEEee-ecCC
Q 008086 112 AKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYN---W----------SGYLAVAEMVEKIGLKLHVSLCF-HALK 176 (578)
Q Consensus 112 ~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Yd---W----------sgY~~l~~mv~~~GLKl~vvmsF-H~cg 176 (578)
-+.|...|..|+.+||+.|-++-=. +..++..|+ + ..++++++.+++.|+||.+=+-+ |-|+
T Consensus 520 ~~~I~ekldyL~~LG~taIWLpP~~---~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag 595 (894)
T PLN02784 520 YMELGEKAAELSSLGFTVVWLPPPT---ESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCA 595 (894)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCCC---CCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccccc
Confidence 5788999999999999999887632 222233343 2 35889999999999999654444 6554
No 226
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=21.15 E-value=4.3e+02 Score=31.79 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=48.0
Q ss_pred CCceEEEeeecceeeCCCccccHHHH-HHHHHHHHHcCcceEEecceeeccccCCCccccc-----------------hH
Q 008086 90 DAVRLFVGLPLDTVSDANTVNHAKAI-AAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNW-----------------SG 151 (578)
Q Consensus 90 ~~vpvyVmLPLd~V~~~n~~~~~~a~-~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdW-----------------sg 151 (578)
....+|-+=.-.. +....+..-+++ +..|..||.+|++.|.+-- +.|. +...+| ..
T Consensus 228 ~~~~IYE~Hvg~~-~~~~~~gty~~~~~~~L~ylk~LG~t~I~LmP---i~e~--~~~~~wGY~~~~~fa~~~~~Gtp~d 301 (758)
T PLN02447 228 AALRIYEAHVGMS-SEEPKVNSYREFADDVLPRIKALGYNAVQLMA---IQEH--AYYGSFGYHVTNFFAVSSRSGTPED 301 (758)
T ss_pred CCCEEEEEeCCcc-cCCCCCCCHHHHHHHHHHHHHHcCCCEEEECC---cccc--CCCCCCCcCcccCcccccccCCHHH
Confidence 3455665443222 222334344454 5679999999999998752 2221 111122 45
Q ss_pred HHHHHHHHHHcCCcEEEEEee-ecCC
Q 008086 152 YLAVAEMVEKIGLKLHVSLCF-HALK 176 (578)
Q Consensus 152 Y~~l~~mv~~~GLKl~vvmsF-H~cg 176 (578)
++++++.+.+.||+|..=+-+ |.++
T Consensus 302 lk~LVd~aH~~GI~VilDvV~nH~~~ 327 (758)
T PLN02447 302 LKYLIDKAHSLGLRVLMDVVHSHASK 327 (758)
T ss_pred HHHHHHHHHHCCCEEEEEeccccccc
Confidence 899999999999999443333 5543
No 227
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=21.08 E-value=2e+02 Score=28.64 Aligned_cols=59 Identities=12% Similarity=0.181 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCcceEEecceeeccccCCCcccc--chHHHHHHHHHHHcCCcEEEEEeee
Q 008086 113 KAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYN--WSGYLAVAEMVEKIGLKLHVSLCFH 173 (578)
Q Consensus 113 ~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Yd--WsgY~~l~~mv~~~GLKl~vvmsFH 173 (578)
+.++..++..+.+|+..|.+.-....-+...+..++ -+.++++++++++.|+++ .|=.|
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l--~lE~~ 154 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTL--AVEIM 154 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEE--EEeeC
Confidence 357788999999999988764211001111111111 245678999999999987 55444
No 228
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=20.96 E-value=2.3e+02 Score=31.39 Aligned_cols=47 Identities=13% Similarity=0.054 Sum_probs=31.0
Q ss_pred HHHHHHHHcCcceEEecceeeccccCCC-------ccccchHHHHHHHHHHHcCCcEEE
Q 008086 117 AGLKALKLLGVEGVELPVWWGVAEKEAM-------GKYNWSGYLAVAEMVEKIGLKLHV 168 (578)
Q Consensus 117 ~~L~~LK~~GV~GV~vdVWWGivE~~~p-------~~YdWsgY~~l~~mv~~~GLKl~v 168 (578)
.-|+.||++|+..|.+.+ |...+ +..+.+.+.+.+++++++|+++.+
T Consensus 288 ell~~l~~aG~~~v~iGi-----ES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~ 341 (497)
T TIGR02026 288 DILHLYRRAGLVHISLGT-----EAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEA 341 (497)
T ss_pred HHHHHHHHhCCcEEEEcc-----ccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 456777788887777753 33222 345667777888888888887644
No 229
>PRK05588 histidinol-phosphatase; Provisional
Probab=20.92 E-value=3.3e+02 Score=27.12 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=28.8
Q ss_pred hHHHHHHHHhCCce-EEeeccccCCCCCCCCCCCChHHH---HHHHHHHHHhcCCee
Q 008086 438 YAAVAEMFAKNSCK-MILPGMDLSDEHQPRESFSSPESL---LAQIRTACNKHGVEV 490 (578)
Q Consensus 438 Y~~Ia~mfak~~~~-l~ftc~Em~d~eqp~~~~s~Pe~L---v~QV~~aa~~~Gv~v 490 (578)
+..+.+++++.|+. +++. +|.+. |+.+ ..+.+..+++.|+++
T Consensus 198 ~~~~l~~~~~~g~~~i~lg----SDAH~-------~~~vg~~~~~~~~~l~~~G~~~ 243 (255)
T PRK05588 198 LVKIYKRFYELGGKYITLG----SDAHN-------IEDIGNNFKFALEIAEYCNLKP 243 (255)
T ss_pred HHHHHHHHHHcCCcEEEEE----CCCCC-------HHHHHhhHHHHHHHHHHcCCEE
Confidence 46788888888887 5666 66664 4444 456677777777653
No 230
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=20.58 E-value=2.5e+02 Score=27.77 Aligned_cols=81 Identities=9% Similarity=0.059 Sum_probs=54.2
Q ss_pred HHHHHHHHhCCceEEeeccccCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccCCCCCcchHHHHHHhccCCCcee
Q 008086 439 AAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENVVD 518 (578)
Q Consensus 439 ~~Ia~mfak~~~~l~ftc~Em~d~eqp~~~~s~Pe~Lv~QV~~aa~~~Gv~v~GENAl~~~d~~~~~qi~~~~~~~~~~~ 518 (578)
..+.+.++++|.++.+..++..|-... ...+|+..+++|+..+..-.|-+.=.+.. ...++..+|++.++..
T Consensus 142 ~~~~~~l~~~Gy~~v~w~v~~~Dw~~~--~~~~~~~~~~~v~~~~~~g~IiLlHd~~~--~t~~aL~~ii~~lk~~---- 213 (224)
T TIGR02884 142 ERTLAYTKELGYYTVFWSLAFKDWKVD--EQPGWQYAYKQIMKKIHPGAILLLHAVSK--DNAEALDKIIKDLKEQ---- 213 (224)
T ss_pred HHHHHHHHHcCCcEEeccccCcccCCC--CCCCHHHHHHHHHhcCCCCcEEEEECCCC--CHHHHHHHHHHHHHHC----
Confidence 347888999999999988887765421 12457888899887665544555543321 1246889999887643
Q ss_pred eEEEeecCc
Q 008086 519 LFTYQRMGA 527 (578)
Q Consensus 519 ~FTylRm~~ 527 (578)
+|++.++.+
T Consensus 214 Gy~fvtl~e 222 (224)
T TIGR02884 214 GYTFKSLDD 222 (224)
T ss_pred CCEEEEhHH
Confidence 466666654
No 231
>PRK08508 biotin synthase; Provisional
Probab=20.42 E-value=3e+02 Score=28.19 Aligned_cols=55 Identities=22% Similarity=0.156 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHHHHcCcceEEe-cceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEe
Q 008086 111 HAKAIAAGLKALKLLGVEGVEL-PVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLC 171 (578)
Q Consensus 111 ~~~a~~~~L~~LK~~GV~GV~v-dVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvms 171 (578)
.++.+.+..+.+++.|+..+.+ +-+= +.....+.+|.++++.+++.++++.+..|
T Consensus 41 s~eeI~~~a~~a~~~g~~~~~lv~sg~------~~~~~~~e~~~ei~~~ik~~~p~l~i~~s 96 (279)
T PRK08508 41 DIEQIVQEAKMAKANGALGFCLVTSGR------GLDDKKLEYVAEAAKAVKKEVPGLHLIAC 96 (279)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeccC------CCCcccHHHHHHHHHHHHhhCCCcEEEec
Confidence 5566667888888899988865 2111 12234788999999999998876654333
No 232
>PRK00957 methionine synthase; Provisional
Probab=20.40 E-value=4.2e+02 Score=27.18 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHcCcceEEecce-eeccccCCCccccchHHHHHHHHHHHcCCcEEEEEeeecCCCCCCCCChhhHhhh
Q 008086 112 AKAIAAGLKALKLLGVEGVELPVW-WGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQPKIPLPDWVSQIG 190 (578)
Q Consensus 112 ~~a~~~~L~~LK~~GV~GV~vdVW-WGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsFH~cg~~~IpLP~WV~~~g 190 (578)
.+++...+++|..+|++.|.+|.= |.. +-.++....+.++.+.+ ++++ ....|-||+.. |-| ....
T Consensus 143 a~~~~~~i~~l~~~G~~~IqiDEP~l~~------~~~~~~~~~~~~~~~~~-~i~~--~v~lH~CG~~~---~i~-~~l~ 209 (305)
T PRK00957 143 ARALRKEAEALEKAGVAMIQIDEPILST------GAYDLEVAKKAIDIITK-GLNV--PVAMHVCGDVS---NII-DDLL 209 (305)
T ss_pred HHHHHHHHHHHHHcCCCEEEecChhhhc------CCchHHHHHHHHHHHHH-hhCC--ceEEEECCCcH---HHH-HHHH
Confidence 456778889999999999999853 543 12234444444443332 3344 24579998642 212 2223
Q ss_pred ccCCCeeeecCCCC
Q 008086 191 ESQSSIFYTDQSGQ 204 (578)
Q Consensus 191 ~~~pdI~ytD~~G~ 204 (578)
+.+-|.+.-|-.|.
T Consensus 210 ~~~vd~i~ld~~~~ 223 (305)
T PRK00957 210 KFNVDILDHEFASN 223 (305)
T ss_pred hCCCCEEEEeecCC
Confidence 46677777777554
No 233
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=20.28 E-value=2.7e+02 Score=28.62 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=41.2
Q ss_pred CCceEEEeeecceeeC-------CCccccHHHHHHHHHHHHHcCcceEEecce-eeccccCCCccccchHHHHHHHHHH-
Q 008086 90 DAVRLFVGLPLDTVSD-------ANTVNHAKAIAAGLKALKLLGVEGVELPVW-WGVAEKEAMGKYNWSGYLAVAEMVE- 160 (578)
Q Consensus 90 ~~vpvyVmLPLd~V~~-------~n~~~~~~a~~~~L~~LK~~GV~GV~vdVW-WGivE~~~p~~YdWsgY~~l~~mv~- 160 (578)
..+++..++-++-.+. .+.-++.+-++.-++.++..|.|||.+|.| +-..+.. | =+...|.++++-++
T Consensus 65 ~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~-~--~d~~~~~~~l~el~~ 141 (318)
T cd02876 65 KNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGV-P--DKRKELIQLVIHLGE 141 (318)
T ss_pred CCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCC-H--HHHHHHHHHHHHHHH
Confidence 4667665554443221 122233444555677788999999999975 2211110 1 14445555554443
Q ss_pred ---HcCCcEEEEEee
Q 008086 161 ---KIGLKLHVSLCF 172 (578)
Q Consensus 161 ---~~GLKl~vvmsF 172 (578)
+.|+++ +++.
T Consensus 142 ~l~~~~~~l--~~~v 154 (318)
T cd02876 142 TLHSANLKL--ILVI 154 (318)
T ss_pred HHhhcCCEE--EEEE
Confidence 346555 5555
No 234
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=20.26 E-value=3.9e+02 Score=32.73 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHcCcceEEecceeeccccCCCccc-------------cchHHHHHHHHHHHcCCcEEEEEeeecCC
Q 008086 113 KAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKY-------------NWSGYLAVAEMVEKIGLKLHVSLCFHALK 176 (578)
Q Consensus 113 ~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Y-------------dWsgY~~l~~mv~~~GLKl~vvmsFH~cg 176 (578)
+.+.+.|..|+++||+.|-+.=-+--.. .+...| ..+.++++++.+++.||||..=+-+--++
T Consensus 20 ~~~~~~l~YL~~LGis~IyLsPi~~a~~-gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 20 DDAAELVPYFADLGVSHLYLSPILAARP-GSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred HHHHHHhHHHHHcCCCEEEECcCccCCC-CCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 4688899999999999997765332111 012222 35789999999999999996666654443
No 235
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=20.11 E-value=1.8e+02 Score=28.66 Aligned_cols=54 Identities=13% Similarity=0.050 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHcCcceEEecceeeccccCCCccc--cchHHHHHHHHHHHcCCcE
Q 008086 113 KAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKY--NWSGYLAVAEMVEKIGLKL 166 (578)
Q Consensus 113 ~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~Y--dWsgY~~l~~mv~~~GLKl 166 (578)
+.+.+.++..+.+|+..|.+.-+..-........+ --+.++++++++++.|+++
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 46778888999999999977443211111111122 2246889999999999877
No 236
>PRK07534 methionine synthase I; Validated
Probab=20.04 E-value=2.3e+02 Score=30.27 Aligned_cols=51 Identities=20% Similarity=0.170 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHHHHcCcceEEecceeeccccCCCccccchHHHHHHHHHHHcCCcEEEEEee
Q 008086 111 HAKAIAAGLKALKLLGVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCF 172 (578)
Q Consensus 111 ~~~a~~~~L~~LK~~GV~GV~vdVWWGivE~~~p~~YdWsgY~~l~~mv~~~GLKl~vvmsF 172 (578)
-......+++.|.+.|||.+-+.-.-.+-|-. .+++.+++.++.+.+.|++
T Consensus 129 ~~~~~~~qi~~l~~~gvD~l~~ET~p~l~E~~-----------a~~~~~~~~~~Pv~vSft~ 179 (336)
T PRK07534 129 AVEAFHEQAEGLKAGGADVLWVETISAPEEIR-----------AAAEAAKLAGMPWCGTMSF 179 (336)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeccCCHHHHH-----------HHHHHHHHcCCeEEEEEEE
Confidence 34566778999999999999888777777765 8888999888887655555
Done!