Query 008087
Match_columns 578
No_of_seqs 553 out of 3478
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 17:49:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fln_A Protease DO-like 2, chl 100.0 1.9E-79 6.5E-84 666.5 49.4 455 121-578 46-505 (539)
2 4a8c_A Periplasmic PH-dependen 100.0 9.3E-57 3.2E-61 483.8 40.0 388 114-551 15-425 (436)
3 3pv2_A DEGQ; trypsin fold, PDZ 100.0 1E-56 3.5E-61 484.6 29.0 390 115-550 22-447 (451)
4 1ky9_A Protease DO, DEGP, HTRA 100.0 1.6E-54 5.4E-59 467.1 20.1 349 148-549 85-443 (448)
5 3stj_A Protease DEGQ; serine p 100.0 1.6E-49 5.5E-54 414.5 26.9 304 114-436 15-337 (345)
6 1te0_A Protease DEGS; two doma 100.0 2.6E-46 9E-51 387.0 26.1 296 115-433 12-315 (318)
7 3qo6_A Protease DO-like 1, chl 100.0 6.8E-45 2.3E-49 380.8 25.7 299 114-435 19-335 (348)
8 1y8t_A Hypothetical protein RV 100.0 3.2E-43 1.1E-47 364.9 28.8 280 115-434 9-315 (324)
9 1lcy_A HTRA2 serine protease; 100.0 6.9E-44 2.4E-48 369.7 19.0 289 114-431 17-322 (325)
10 3num_A Serine protease HTRA1; 100.0 3.3E-43 1.1E-47 366.0 17.6 291 114-433 16-322 (332)
11 1l1j_A Heat shock protease HTR 100.0 2.2E-33 7.5E-38 278.0 14.1 214 114-332 6-239 (239)
12 3sti_A Protease DEGQ; serine p 100.0 2.8E-33 9.6E-38 277.9 14.6 209 114-329 15-241 (245)
13 3lgi_A Protease DEGS; stress-s 100.0 3.3E-31 1.1E-35 262.4 19.6 205 115-330 23-234 (237)
14 3tjo_A Serine protease HTRA1; 100.0 1.4E-29 4.8E-34 249.7 16.7 193 114-320 33-230 (231)
15 3k6y_A Serine protease, possib 100.0 2.7E-27 9.2E-32 234.3 20.9 191 116-325 35-231 (237)
16 2as9_A Serine protease; trypsi 99.9 1.7E-23 5.9E-28 203.1 14.1 182 123-320 3-203 (210)
17 2w5e_A Putative serine proteas 99.9 5.2E-23 1.8E-27 191.0 15.3 137 148-308 20-156 (163)
18 2w7s_A Serine protease SPLA; h 99.8 1.6E-20 5.5E-25 180.5 12.0 171 135-317 9-196 (200)
19 1agj_A Epidermolytic toxin A; 99.8 5.5E-20 1.9E-24 182.2 11.4 162 148-318 54-240 (242)
20 2vid_A Serine protease SPLB; h 99.8 2.5E-19 8.5E-24 172.4 15.0 173 135-318 9-201 (204)
21 2h5c_A Alpha-lytic protease; s 99.8 2.9E-18 9.9E-23 164.4 18.5 154 150-315 17-191 (198)
22 2l97_A HTRA, putative serine p 99.8 6.3E-20 2.1E-24 165.1 6.1 124 300-434 2-128 (134)
23 2o8l_A V8 protease, taphylococ 99.8 7.2E-18 2.5E-22 170.2 19.7 159 148-319 33-210 (274)
24 1wcz_A Glutamyl endopeptidase; 99.8 9.2E-18 3.1E-22 168.8 16.6 159 148-319 33-210 (268)
25 1qtf_A Exfoliative toxin B; se 99.7 3.2E-18 1.1E-22 170.0 10.2 146 148-312 47-216 (246)
26 1hpg_A Glutamic acid specific 99.7 1.4E-16 4.8E-21 151.4 18.1 155 150-315 13-182 (187)
27 3rle_A Golgi reassembly-stacki 99.7 2.7E-17 9.2E-22 159.3 10.7 147 352-545 15-169 (209)
28 2oua_A Serine protease, protei 99.7 4.9E-16 1.7E-20 147.7 18.7 153 149-315 14-182 (188)
29 2qa9_E Streptogrisin-B; chymot 99.7 3.3E-16 1.1E-20 148.6 14.6 160 149-316 12-181 (185)
30 3gsl_A Disks large homolog 4; 99.7 7.7E-16 2.6E-20 146.8 16.1 147 352-547 34-191 (196)
31 2ea3_A Chymotrypsin; celloulom 99.7 1.2E-15 4.1E-20 145.0 15.5 150 151-315 18-176 (189)
32 2pfe_A Protease A, alkaline se 99.6 4E-15 1.4E-19 141.0 14.3 150 152-315 18-179 (186)
33 1mbm_A NSP4 proteinase, chymot 99.6 9.2E-16 3.2E-20 140.6 9.5 116 148-292 14-130 (198)
34 2qt5_A Glutamate receptor-inte 99.6 2.8E-15 9.7E-20 143.9 12.3 146 352-548 32-197 (200)
35 1p1d_A PDZ45, glutamate recept 99.6 3.2E-15 1.1E-19 143.1 11.6 143 352-546 35-195 (196)
36 2sga_A Proteinase A; hydrolase 99.6 5.5E-15 1.9E-19 139.6 11.8 152 149-315 12-176 (181)
37 3r0h_A INAD, inactivation-NO-a 99.5 3.2E-14 1.1E-18 136.9 13.2 139 353-545 45-195 (206)
38 1fxy_A Coagulation factor XA-t 99.5 3.9E-13 1.3E-17 131.5 16.7 184 135-319 8-224 (228)
39 1w9e_A Syntenin 1; cell adhesi 99.5 1.8E-13 6.1E-18 127.3 13.6 145 327-542 15-162 (166)
40 1ton_A Tonin; hydrolase(serine 99.5 1.1E-12 3.7E-17 128.8 18.9 183 135-320 8-232 (235)
41 1pq7_A Trypsin; ultra-high res 99.5 4.2E-13 1.4E-17 130.9 15.8 181 137-317 10-222 (224)
42 1hj8_A Trypsin I; hydrolase, r 99.5 9.8E-13 3.4E-17 128.1 17.4 182 135-319 8-219 (222)
43 1npm_A Neuropsin; serine prote 99.5 8.7E-13 3E-17 128.7 16.6 181 135-318 8-223 (225)
44 2zch_P Prostate-specific antig 99.5 1.3E-12 4.5E-17 128.4 17.7 183 135-320 8-234 (237)
45 3mfj_A Cationic trypsin; serin 99.5 1.4E-12 4.9E-17 127.1 17.6 181 136-319 9-220 (223)
46 4i8h_A Cationic trypsin, beta- 99.5 1.4E-12 4.9E-17 126.8 17.3 183 135-320 8-221 (223)
47 1gvz_A Kallikrein-1E2; antigen 99.5 1.1E-12 3.9E-17 128.9 16.7 181 136-319 9-233 (237)
48 1aut_C Activated protein C; se 99.4 1.3E-12 4.4E-17 129.7 16.3 186 135-320 8-239 (250)
49 1ao5_A Glandular kallikrein-13 99.4 1.9E-12 6.4E-17 127.3 17.2 182 135-319 8-233 (237)
50 1mza_A Pro-granzyme K; apoptos 99.4 2.1E-12 7.2E-17 127.2 17.4 186 133-319 8-234 (240)
51 1lo6_A Kallikrein 6, HK6; seri 99.4 2.2E-12 7.5E-17 125.7 17.2 181 136-319 9-220 (223)
52 1cgh_A Cathepsin G; inflammati 99.4 2.2E-12 7.6E-17 125.7 17.1 166 149-319 27-222 (224)
53 1fuj_A PR3, myeloblastin; hydr 99.4 3.2E-12 1.1E-16 124.1 17.8 168 148-318 26-219 (221)
54 3fan_A Non-structural protein; 99.4 2.2E-13 7.4E-18 127.1 8.9 117 148-294 29-146 (213)
55 2bdg_A Kallikrein-4; serine pr 99.4 2.7E-12 9.2E-17 125.1 16.8 182 135-319 8-221 (223)
56 2qxi_A Kallikrein-7; S1 pocket 99.4 2.1E-12 7E-17 126.0 16.0 182 136-320 9-221 (224)
57 2psx_A Kallikrein-5; zinc inhi 99.4 2.4E-12 8.1E-17 125.8 16.2 183 135-320 8-224 (227)
58 1sgf_A 7S NGF, nerve growth fa 99.4 2E-12 6.7E-17 127.4 15.7 183 135-320 11-237 (240)
59 1a7s_A Heparin binding protein 99.4 3.2E-12 1.1E-16 124.6 16.9 176 136-321 9-219 (225)
60 2z7f_E Leukocyte elastase; ser 99.4 2.2E-12 7.5E-17 125.2 15.6 180 136-318 9-216 (218)
61 1iau_A Granzyme B; hydrolase-h 99.4 4.4E-12 1.5E-16 123.8 17.4 166 149-319 27-224 (227)
62 1t8o_A Chymotrypsin A; chymotr 99.4 4.6E-12 1.6E-16 125.3 17.5 195 124-319 12-242 (245)
63 1si5_H Scatter factor, hepatoc 99.4 1.1E-11 3.9E-16 122.0 19.7 183 138-320 10-227 (240)
64 1bru_P Elastase, PPE; serine p 99.4 6.9E-12 2.3E-16 123.7 18.0 171 149-319 28-238 (241)
65 1azz_A Collagenase; complex (s 99.4 2E-12 6.9E-17 126.3 14.0 182 136-319 9-222 (226)
66 3s9c_A Vipera russelli protein 99.4 5.3E-12 1.8E-16 123.6 17.0 183 137-322 10-227 (234)
67 2pzd_A Serine protease HTRA2; 99.4 2.8E-13 9.4E-18 117.7 6.9 97 322-433 1-103 (113)
68 2xw9_A Complement factor D; im 99.4 5.7E-12 1.9E-16 123.0 16.9 181 137-318 10-226 (228)
69 3gov_B MAsp-1; complement, ser 99.4 7.1E-12 2.4E-16 123.8 17.6 183 137-319 10-247 (251)
70 2aiq_A Protein C activator; sn 99.4 5.2E-12 1.8E-16 123.7 16.4 181 137-321 10-223 (231)
71 1spj_A Kallikrein 1; serine pr 99.4 7E-12 2.4E-16 123.2 17.2 181 136-319 9-234 (238)
72 4e7n_A Snake-venom thrombin-li 99.4 7.1E-12 2.4E-16 122.9 17.1 184 137-321 10-230 (238)
73 3s69_A Thrombin-like enzyme de 99.4 7.2E-12 2.5E-16 122.5 17.0 184 137-321 10-226 (234)
74 1eq9_A Chymotrypsin; FIRE ANT, 99.4 6.6E-12 2.3E-16 122.2 16.4 180 136-318 9-219 (222)
75 1orf_A Granzyme A; hydrolase-h 99.4 7.6E-12 2.6E-16 122.7 16.8 181 137-319 10-230 (234)
76 1gvk_B Elastase 1, peptide inh 99.4 8.6E-12 2.9E-16 122.8 17.2 171 149-319 28-237 (240)
77 3h7t_A Group 3 allergen smipp- 99.4 4.5E-12 1.5E-16 123.9 15.0 182 137-320 10-229 (235)
78 2f91_A Hepatopancreas trypsin; 99.4 8.9E-12 3E-16 122.5 17.2 168 150-317 29-234 (237)
79 4ag1_A Chymase; hydrolase-de n 99.4 1.4E-11 4.8E-16 120.0 18.4 167 148-320 27-224 (226)
80 3ncl_A Suppressor of tumorigen 99.4 6.2E-12 2.1E-16 123.6 15.8 183 136-318 9-238 (241)
81 2p3w_A Probable serine proteas 99.4 3.4E-13 1.2E-17 117.0 5.7 97 322-433 1-103 (112)
82 2asu_B Hepatocyte growth facto 99.4 8.8E-12 3E-16 122.3 16.6 182 138-319 8-225 (234)
83 1elt_A Elastase; serine protei 99.4 7.5E-12 2.5E-16 122.9 15.4 169 149-317 28-234 (236)
84 2zgc_A Granzyme M; serine prot 99.4 1.5E-11 5.1E-16 121.2 17.6 184 137-320 10-229 (240)
85 1euf_A Duodenase; serine prote 99.4 1.1E-11 3.7E-16 121.1 16.3 166 148-318 26-222 (227)
86 1ym0_A Fibrinotic enzyme compo 99.4 1.3E-11 4.4E-16 121.2 16.8 183 137-320 10-236 (238)
87 2qy0_B Complement C1R subcompo 99.4 3.1E-12 1.1E-16 126.0 12.3 184 134-319 7-238 (242)
88 2jkh_A Activated factor XA hea 99.4 5.8E-12 2E-16 124.1 14.2 186 135-320 8-233 (241)
89 3tvj_B Mannan-binding lectin s 99.4 7E-12 2.4E-16 123.1 14.8 186 134-319 7-239 (242)
90 3rp2_A RAT MAST cell protease 99.4 1.8E-11 6.2E-16 118.9 17.4 165 148-318 27-222 (224)
91 1ddj_A Plasminogen; catalytic 99.4 1.4E-11 4.9E-16 121.8 16.8 185 136-320 26-245 (247)
92 3beu_A Trypsin, SGT; beta shee 99.3 1.7E-11 5.9E-16 119.2 16.9 181 134-319 7-221 (224)
93 3suz_A Amyloid beta A4 precurs 99.3 2.5E-13 8.6E-18 143.4 4.1 137 353-544 232-372 (388)
94 1m9u_A Earthworm fibrinolytic 99.3 8E-12 2.7E-16 123.0 14.7 169 149-317 27-239 (241)
95 3gyl_B Prostasin; ENAC, zymoge 99.3 1.7E-11 5.8E-16 121.9 16.5 185 136-320 9-242 (261)
96 2any_A Kininogenin, plasma kal 99.3 1.7E-11 5.7E-16 120.8 16.2 184 137-320 10-236 (241)
97 2bdy_A Thrombin; thrombin, com 99.3 1.7E-11 5.7E-16 124.3 16.4 194 127-320 30-285 (289)
98 3fzz_A Granzyme C; hydrolase, 99.3 2.2E-11 7.4E-16 118.6 16.6 167 148-319 27-225 (227)
99 3bg8_A Coagulation factor XIA 99.3 2E-11 6.8E-16 120.0 16.2 183 137-319 10-235 (238)
100 2hlc_A Collagenase; serine pro 99.3 1.1E-11 3.9E-16 121.1 14.4 172 148-319 27-226 (230)
101 1p3c_A Glutamyl-endopeptidase; 99.3 5.2E-12 1.8E-16 122.2 11.8 157 149-318 30-212 (215)
102 3rm2_H Thrombin heavy chain; s 99.3 1.4E-11 4.9E-16 122.1 14.9 184 136-319 9-254 (259)
103 2oq5_A Transmembrane protease, 99.3 5.4E-11 1.8E-15 116.4 18.8 183 136-318 9-229 (232)
104 1fiw_A Beta-acrosin heavy chai 99.3 4.5E-11 1.5E-15 121.2 18.3 171 149-319 30-248 (290)
105 2wph_S Coagulation factor IXA 99.3 1.3E-11 4.3E-16 121.1 13.4 183 136-318 9-231 (235)
106 2bz6_H Blood coagulation facto 99.3 2.1E-11 7.2E-16 121.0 15.1 186 135-320 8-240 (254)
107 2olg_A Pro-phenoloxidase activ 99.3 2.7E-11 9.2E-16 122.0 15.9 170 148-317 50-274 (278)
108 2r0l_A Hepatocyte growth facto 99.3 3.3E-11 1.1E-15 119.1 16.3 186 135-320 8-239 (248)
109 3mhw_U Urokinase-type plasmino 99.3 3.4E-11 1.2E-15 118.7 16.1 171 148-318 28-244 (247)
110 1pyt_D TC, PCPA-TC, chymotryps 99.3 2.6E-11 8.9E-16 120.2 15.1 171 148-318 40-248 (251)
111 3h7o_A Group 3 allergen smipp- 99.3 1.4E-11 4.8E-16 120.0 12.8 169 150-320 27-226 (228)
112 1rtf_B (TC)-T-PA, two chain ti 99.3 5.2E-11 1.8E-15 117.9 17.1 171 148-318 29-249 (252)
113 4dgj_A Enteropeptidase catalyt 99.3 2.3E-11 7.9E-16 119.1 14.3 181 137-317 10-232 (235)
114 2jde_A Urokinase-type plasmino 99.3 4.7E-11 1.6E-15 120.0 16.3 170 149-318 52-267 (276)
115 1yc0_A Hepatocyte growth facto 99.3 4.6E-11 1.6E-15 120.6 16.2 192 128-319 36-273 (283)
116 2f9n_A Alpha I tryptase; serin 99.3 2.5E-11 8.4E-16 119.8 13.8 183 137-319 10-241 (245)
117 2xkx_A Disks large homolog 4; 99.3 2.2E-11 7.4E-16 138.6 15.1 148 352-549 88-247 (721)
118 1md8_A C1R complement serine p 99.3 2.3E-11 7.7E-16 125.8 13.1 191 127-319 89-327 (329)
119 1z8g_A Serine protease hepsin; 99.3 8.4E-11 2.9E-15 123.5 17.3 194 127-320 117-360 (372)
120 1fon_A Procarboxypeptidase A-S 99.3 1.2E-11 4.1E-16 121.7 10.1 171 149-319 26-237 (240)
121 3f1s_B Vitamin K-dependent pro 99.2 4.8E-11 1.6E-15 120.6 13.6 183 137-320 62-276 (283)
122 1zjk_A Mannan-binding lectin s 99.2 6.8E-11 2.3E-15 125.5 14.3 193 127-319 161-400 (403)
123 1gpz_A Complement C1R componen 99.2 9.4E-11 3.2E-15 124.2 13.8 191 127-319 157-395 (399)
124 2b9l_A Prophenoloxidase activa 99.2 1.8E-10 6.1E-15 121.8 15.7 195 127-321 129-384 (394)
125 2i4s_A General secretion pathw 99.2 2.1E-11 7.2E-16 104.4 6.6 101 308-430 4-105 (105)
126 2vnt_A Urokinase-type plasmino 99.2 3.5E-10 1.2E-14 113.4 16.7 172 149-320 52-269 (276)
127 4f4o_C Haptoglobin; globin fol 99.2 1.1E-10 3.8E-15 121.4 13.0 193 126-320 101-345 (347)
128 3cp7_A Alkaline serine proteas 99.2 2.3E-10 7.8E-15 111.2 13.9 165 148-318 20-214 (218)
129 3nxp_A Prethrombin-1; alloster 99.2 5.7E-11 1.9E-15 127.0 10.5 193 127-319 165-419 (424)
130 2xkx_A Disks large homolog 4; 99.2 2.1E-10 7.3E-15 130.4 15.8 168 352-547 183-392 (721)
131 3h5c_B Vitamin K-dependent pro 99.2 2E-10 6.9E-15 117.9 13.7 182 136-318 102-315 (317)
132 3i18_A LMO2051 protein; alpha- 99.2 7.1E-11 2.4E-15 100.1 8.5 73 352-434 6-78 (100)
133 1elv_A Complement C1S componen 99.2 1.7E-10 5.8E-15 119.3 13.0 190 127-320 82-325 (333)
134 2xxl_A GRAM-positive specific 99.1 4.6E-10 1.6E-14 119.2 15.5 173 148-320 145-373 (408)
135 1zyo_A Serine protease; beta-b 99.1 3.2E-10 1.1E-14 107.0 12.3 150 149-315 27-186 (191)
136 2vz5_A TAX1-binding protein 3; 99.1 2.9E-11 1E-15 108.9 4.4 100 321-432 32-135 (139)
137 4dur_A Plasminogen, serine pro 99.1 7.1E-10 2.4E-14 126.5 15.7 194 127-320 561-789 (791)
138 3id1_A Regulator of sigma E pr 99.1 5.3E-11 1.8E-15 100.0 4.6 71 355-435 4-77 (95)
139 2kjp_A Uncharacterized protein 99.1 2.4E-11 8.4E-16 101.2 2.2 71 354-434 2-72 (91)
140 2kl1_A YLBL protein; structure 99.1 9.9E-11 3.4E-15 98.1 5.7 73 352-434 4-76 (94)
141 2i6v_A General secretion pathw 99.0 1.7E-10 5.9E-15 95.1 4.8 68 353-430 19-87 (87)
142 1uit_A Human discs large 5 pro 99.0 9.5E-11 3.2E-15 102.3 2.7 94 319-425 7-105 (117)
143 2f83_A Coagulation factor XI; 99.0 1.4E-09 4.9E-14 121.7 11.4 191 127-317 387-620 (625)
144 1rrk_A Complement factor B; BB 98.9 1.8E-09 6.1E-14 117.5 10.8 185 137-321 224-491 (497)
145 2eaq_A LIM domain only protein 98.9 3.6E-10 1.2E-14 93.6 3.2 61 352-422 27-90 (90)
146 1arb_A Achromobacter protease 98.9 1.1E-08 3.7E-13 102.3 14.4 128 149-293 34-212 (268)
147 2w4f_A Protein LAP4; structura 98.9 2.2E-09 7.4E-14 90.1 6.2 82 327-423 13-95 (97)
148 3hrz_D Complement factor B; se 98.9 9.2E-09 3.1E-13 117.5 13.2 191 132-322 461-734 (741)
149 2xrc_A Human complement factor 98.9 1.2E-08 3.9E-13 113.0 12.9 191 127-319 321-555 (565)
150 3cyy_A Tight junction protein 98.8 1.1E-09 3.7E-14 91.0 3.5 77 339-428 10-90 (92)
151 2fcf_A Multiple PDZ domain pro 98.8 2.7E-09 9.3E-14 90.6 4.9 82 327-422 15-100 (103)
152 2zpm_A Regulator of sigma E pr 98.8 2.3E-09 8E-14 88.8 4.4 68 354-432 5-73 (91)
153 1x5q_A LAP4 protein; PDZ domai 98.8 5.5E-09 1.9E-13 89.9 6.9 83 327-424 25-108 (110)
154 2eeh_A PDZ domain-containing p 98.8 6.6E-09 2.2E-13 87.8 7.2 75 327-423 21-96 (100)
155 3sfj_A TAX1-binding protein 3; 98.8 8.9E-09 3.1E-13 87.5 8.0 83 327-420 18-104 (104)
156 2rcz_A Tight junction protein 98.8 2.1E-09 7.2E-14 86.8 3.4 77 331-421 1-81 (81)
157 2pkt_A PDZ and LIM domain prot 98.8 3.3E-09 1.1E-13 88.0 4.6 62 353-424 27-89 (91)
158 2odp_A Complement C2; C3/C5 co 98.8 6.7E-09 2.3E-13 113.4 7.2 182 138-319 234-500 (509)
159 1wh1_A KIAA1095 protein; PDZ d 98.7 3.3E-09 1.1E-13 93.4 2.9 80 327-426 31-112 (124)
160 2vsp_A PDZ domain-containing p 98.7 5E-09 1.7E-13 86.9 3.7 61 352-424 26-89 (91)
161 2iwq_A Multiple PDZ domain pro 98.7 1E-08 3.5E-13 90.2 5.6 82 327-422 35-120 (123)
162 1qau_A Neuronal nitric oxide s 98.7 1.4E-08 4.7E-13 87.6 6.0 70 352-432 25-98 (112)
163 2yub_A LIMK-2, LIM domain kina 98.7 3.7E-09 1.3E-13 92.3 2.1 62 352-425 43-109 (118)
164 1yph_C Chymotrypsin A, chain B 98.7 7.7E-08 2.6E-12 85.3 10.5 99 135-234 8-128 (131)
165 3rle_A Golgi reassembly-stacki 98.7 2.5E-08 8.7E-13 96.0 7.5 84 327-430 94-181 (209)
166 4fgm_A Aminopeptidase N family 98.7 4.4E-08 1.5E-12 108.6 10.3 79 345-434 486-567 (597)
167 3bpu_A Membrane-associated gua 98.7 3.9E-08 1.3E-12 80.9 7.3 60 352-422 26-87 (88)
168 2dls_A PDZ-rhogef, RHO guanine 98.6 4.4E-08 1.5E-12 81.5 7.1 59 353-422 29-88 (93)
169 2h2b_A Tight junction protein 98.6 5.4E-08 1.9E-12 83.1 7.6 62 352-423 38-99 (107)
170 2edz_A PDZ domain-containing p 98.6 1.9E-09 6.4E-14 93.5 -1.6 67 352-428 37-104 (114)
171 1uez_A KIAA1526 protein; PDZ d 98.6 1.6E-08 5.6E-13 85.5 4.2 60 352-422 34-94 (101)
172 1vb7_A PDZ and LIM domain 2; P 98.6 1E-08 3.4E-13 85.6 2.6 59 353-423 30-91 (94)
173 2vwr_A Ligand of NUMB protein 98.6 4.4E-08 1.5E-12 81.7 6.3 61 352-422 28-90 (95)
174 2v90_A PDZ domain-containing p 98.6 7E-09 2.4E-13 86.9 1.2 61 352-424 29-92 (96)
175 2koj_A Partitioning defective 98.6 5.8E-08 2E-12 83.5 7.0 63 353-423 39-103 (111)
176 1ihj_A INAD; intermolecular di 98.6 4E-08 1.4E-12 82.4 5.7 61 352-422 36-98 (98)
177 1uf1_A KIAA1526 protein; PDZ d 98.6 2.4E-08 8.2E-13 88.3 4.3 70 353-433 46-116 (128)
178 2pa1_A PDZ and LIM domain prot 98.6 3E-08 1E-12 81.3 4.4 58 353-422 26-86 (87)
179 2awx_A Synapse associated prot 98.6 5.8E-08 2E-12 82.7 6.3 69 352-430 32-102 (105)
180 2uzc_A Human pdlim5, PDZ and L 98.6 4.3E-08 1.5E-12 80.5 5.3 60 353-422 27-87 (88)
181 3tsv_A Tight junction protein 98.6 3.5E-08 1.2E-12 86.9 5.0 61 353-423 51-114 (124)
182 2he4_A Na(+)/H(+) exchange reg 98.6 4.6E-08 1.6E-12 80.8 5.2 59 352-422 27-88 (90)
183 4amh_A Disks large homolog 1; 98.6 9E-08 3.1E-12 81.7 7.1 70 352-431 31-103 (106)
184 2jil_A GRIP1 protein, glutamat 98.6 2.2E-08 7.6E-13 83.9 3.1 60 352-423 31-94 (97)
185 2hga_A Conserved protein MTH13 98.6 8.1E-08 2.8E-12 84.6 6.8 67 352-432 24-90 (125)
186 1v5l_A PDZ and LIM domain 3; a 98.6 1.7E-08 5.7E-13 85.8 2.2 59 353-423 29-90 (103)
187 1nf3_C PAR-6B; semi-CRIB motif 98.6 1.4E-08 4.7E-13 89.9 1.8 82 329-422 43-126 (128)
188 1m5z_A GRIP, AMPA receptor int 98.6 9.8E-08 3.4E-12 78.9 6.7 58 353-420 32-90 (91)
189 1rgw_A ZAsp protein; PDZ, cyph 98.6 5.8E-08 2E-12 79.1 5.3 60 353-422 25-85 (85)
190 2jxo_A Ezrin-radixin-moesin-bi 98.5 1.9E-08 6.6E-13 84.5 1.7 60 352-422 32-94 (98)
191 2kom_A Partitioning defective 98.5 1E-07 3.5E-12 83.4 6.4 62 353-422 58-121 (121)
192 1b8q_A Protein (neuronal nitri 98.5 2.5E-08 8.5E-13 88.1 2.4 68 353-431 33-104 (127)
193 1wf7_A Enigma homologue protei 98.5 1.5E-08 5.3E-13 86.0 0.8 67 353-429 29-96 (103)
194 2opg_A Multiple PDZ domain pro 98.5 1.2E-07 4.1E-12 79.5 6.2 62 353-424 30-93 (98)
195 2q3g_A PDZ and LIM domain prot 98.5 9.1E-08 3.1E-12 78.8 5.3 60 353-422 27-87 (89)
196 2eeg_A PDZ and LIM domain prot 98.5 6.9E-08 2.4E-12 80.4 4.5 60 353-422 32-92 (94)
197 1wi2_A Riken cDNA 2700099C19; 98.5 9.5E-08 3.2E-12 81.2 5.4 71 328-422 27-100 (104)
198 2iwn_A Multiple PDZ domain pro 98.5 2E-07 6.9E-12 77.8 7.3 79 327-422 14-94 (97)
199 2fe5_A Presynaptic protein SAP 98.5 1.5E-07 5.2E-12 78.2 6.4 61 352-422 32-94 (94)
200 1uf1_A KIAA1526 protein; PDZ d 98.5 1E-07 3.5E-12 84.2 5.6 96 407-548 5-106 (128)
201 2f5y_A Regulator of G-protein 98.5 2E-07 6.9E-12 77.1 7.0 62 353-424 24-86 (91)
202 3ngh_A PDZ domain-containing p 98.5 6.1E-08 2.1E-12 82.6 3.7 62 352-423 25-87 (106)
203 2qg1_A Multiple PDZ domain pro 98.5 1.8E-07 6.2E-12 77.4 6.6 61 352-422 28-90 (92)
204 2qkv_A Inactivation-NO-after-p 98.5 1.7E-07 5.9E-12 78.4 6.4 59 352-420 30-90 (96)
205 1x5n_A Harmonin; PDZ domain, u 98.5 2.7E-08 9.2E-13 86.1 1.4 63 352-425 40-104 (114)
206 3khf_A Microtubule-associated 98.5 7.2E-08 2.5E-12 81.1 3.8 60 354-423 35-95 (99)
207 2l97_A HTRA, putative serine p 98.5 6E-07 2.1E-11 80.0 10.0 56 492-548 57-117 (134)
208 3id1_A Regulator of sigma E pr 98.5 7.9E-08 2.7E-12 80.4 3.9 52 495-546 9-61 (95)
209 2i04_A Membrane-associated gua 98.5 1.7E-07 5.7E-12 76.4 5.8 59 353-419 25-85 (85)
210 3axa_A Afadin, nectin-3, prote 98.5 2.1E-07 7.1E-12 79.3 6.3 62 352-423 37-100 (106)
211 2qbw_A PDZ-fibronectin fusion 98.5 4.8E-07 1.6E-11 85.7 9.5 72 352-433 23-97 (195)
212 2jik_A Synaptojanin-2 binding 98.5 2.3E-07 7.9E-12 78.3 6.5 61 352-422 36-98 (101)
213 2ego_A General receptor for ph 98.5 1.6E-07 5.5E-12 78.5 5.4 56 353-420 37-95 (96)
214 2la8_A Inactivation-NO-after-p 98.5 2E-07 6.8E-12 79.6 6.1 59 352-420 24-84 (106)
215 2d90_A PDZ domain containing p 98.4 1.8E-07 6.1E-12 79.1 5.6 62 352-423 29-91 (102)
216 1wif_A RSGI RUH-020, riken cDN 98.4 8E-08 2.7E-12 84.6 3.5 58 353-420 49-110 (126)
217 2ejy_A 55 kDa erythrocyte memb 98.4 1.5E-07 5.3E-12 78.9 5.1 56 353-420 36-95 (97)
218 1n7e_A AMPA receptor interacti 98.4 2.1E-07 7.3E-12 77.9 6.0 61 353-423 30-92 (97)
219 2yt7_A Amyloid beta A4 precurs 98.4 1.9E-07 6.6E-12 78.8 5.8 58 353-420 37-98 (101)
220 2jre_A C60-1 PDZ domain peptid 98.4 8.6E-08 2.9E-12 82.0 3.6 62 352-423 43-106 (108)
221 2e7k_A Maguk P55 subfamily mem 98.4 1.2E-07 4.1E-12 78.5 4.2 67 328-420 18-87 (91)
222 2r4h_A Membrane-associated gua 98.4 2.6E-07 8.9E-12 79.6 6.2 62 352-423 48-111 (112)
223 1mfg_A ERB-B2 interacting prot 98.4 3.5E-07 1.2E-11 76.2 6.8 60 352-421 34-93 (95)
224 1ueq_A Membrane associated gua 98.4 2.4E-07 8.2E-12 81.3 6.0 62 352-421 43-106 (123)
225 2i6v_A General secretion pathw 98.4 3.9E-07 1.3E-11 74.7 6.7 50 500-549 31-81 (87)
226 1v5q_A GRIP1 homolog, glutamat 98.4 1.3E-07 4.5E-12 82.9 4.0 60 353-422 45-108 (122)
227 1uep_A Membrane associated gua 98.4 1E-07 3.5E-12 80.8 3.3 63 352-422 33-97 (103)
228 2pzd_A Serine protease HTRA2; 98.4 7.5E-07 2.6E-11 76.7 8.7 83 451-549 7-94 (113)
229 2i1n_A Discs, large homolog 3; 98.4 2.8E-07 9.7E-12 77.8 5.9 63 352-424 33-97 (102)
230 2o2t_A Multiple PDZ domain pro 98.4 3E-08 1E-12 86.2 -0.4 97 308-424 5-113 (117)
231 1y7n_A Amyloid beta A4 precurs 98.4 1.7E-07 5.9E-12 77.5 4.1 68 339-420 19-89 (90)
232 2dmz_A INAD-like protein; PDZ 98.4 1.2E-07 4.1E-12 83.9 3.3 61 352-424 45-109 (129)
233 2zpm_A Regulator of sigma E pr 98.4 2.4E-07 8.3E-12 76.5 4.9 54 495-548 11-64 (91)
234 1um1_A KIAA1849 protein, RSGI 98.4 2.9E-07 9.9E-12 79.0 5.6 67 352-428 35-103 (110)
235 3r68_A Na(+)/H(+) exchange reg 98.4 2.8E-07 9.7E-12 76.7 5.3 59 353-423 29-90 (95)
236 1ujv_A Membrane associated gua 98.4 5E-07 1.7E-11 75.6 6.8 60 353-422 32-92 (96)
237 1d5g_A Human phosphatase HPTP1 98.4 4.9E-07 1.7E-11 75.4 6.6 61 352-422 32-94 (96)
238 3i4w_A Disks large homolog 4; 98.4 3.1E-07 1.1E-11 77.8 5.4 60 353-422 35-96 (104)
239 2kjp_A Uncharacterized protein 98.4 2.4E-07 8.3E-12 76.8 4.5 53 495-548 8-61 (91)
240 1va8_A Maguk P55 subfamily mem 98.4 1.9E-07 6.6E-12 80.6 4.0 59 353-423 48-110 (113)
241 2djt_A Unnamed protein product 98.4 2.6E-07 9.1E-12 78.3 4.8 62 352-423 37-100 (104)
242 1q7x_A PDZ2B domain of PTP-BAS 98.4 4.7E-07 1.6E-11 77.3 6.3 62 352-423 41-104 (108)
243 2kv8_A RGS12, regulator of G-p 98.4 2.3E-07 8E-12 75.2 4.1 58 353-420 23-81 (83)
244 2fne_A Multiple PDZ domain pro 98.4 2.9E-07 1E-11 80.0 5.0 61 353-423 53-115 (117)
245 2q9v_A Membrane-associated gua 98.4 1.9E-07 6.5E-12 76.9 3.5 61 353-421 27-89 (90)
246 1tp5_A Presynaptic density pro 98.4 4.2E-07 1.4E-11 79.1 5.8 60 353-422 38-99 (119)
247 3i18_A LMO2051 protein; alpha- 98.3 1.3E-06 4.4E-11 73.6 8.6 57 492-549 7-68 (100)
248 2p3w_A Probable serine proteas 98.3 8.7E-07 3E-11 76.2 7.7 82 451-548 7-93 (112)
249 2kjd_A Sodium/hydrogen exchang 98.3 1.6E-07 5.6E-12 82.8 3.2 63 352-425 32-97 (128)
250 2kl1_A YLBL protein; structure 98.3 7.2E-07 2.5E-11 74.3 6.9 56 492-548 5-65 (94)
251 2byg_A Channel associated prot 98.3 5.9E-07 2E-11 78.1 6.4 61 352-422 53-115 (117)
252 3mmg_A Nuclear inclusion prote 98.3 1.9E-05 6.4E-10 75.9 17.2 169 119-317 12-193 (241)
253 1wfg_A Regulating synaptic mem 98.3 4.1E-07 1.4E-11 80.8 5.4 62 353-422 65-128 (131)
254 1kwa_A Hcask/LIN-2 protein; PD 98.3 3.3E-07 1.1E-11 75.3 4.4 58 353-422 25-86 (88)
255 2iwo_A Multiple PDZ domain pro 98.3 1.4E-07 4.9E-12 82.4 1.9 63 353-425 53-117 (120)
256 2pa1_A PDZ and LIM domain prot 98.3 7.5E-07 2.6E-11 72.9 6.1 54 493-547 27-86 (87)
257 3qik_A Phosphatidylinositol 3, 98.3 1.9E-07 6.4E-12 78.3 2.4 57 352-418 38-98 (101)
258 1q3o_A Shank1; PDZ, GKAP, pept 98.3 6.6E-07 2.3E-11 76.6 5.9 56 353-420 45-103 (109)
259 1wha_A KIAA0147 protein, scrib 98.3 4.1E-07 1.4E-11 77.3 4.6 61 352-422 37-99 (105)
260 2ehr_A INAD-like protein; PDZ 98.3 5.9E-07 2E-11 77.9 5.5 61 352-422 49-111 (117)
261 2dlu_A INAD-like protein; PDZ 98.3 6.2E-07 2.1E-11 77.0 5.5 61 353-423 38-100 (111)
262 2pka_B Kallikrein A; serine pr 98.3 4.3E-06 1.5E-10 75.9 11.4 125 194-319 6-148 (152)
263 3stj_A Protease DEGQ; serine p 98.3 1E-06 3.5E-11 91.2 8.0 80 451-550 241-326 (345)
264 2g5m_B Neurabin-2; spinophilin 98.3 3.6E-07 1.2E-11 78.7 3.8 65 352-426 34-100 (113)
265 2kpk_A Membrane-associated gua 98.3 4.9E-07 1.7E-11 80.0 4.7 62 353-422 43-106 (129)
266 1n7t_A 99-MER peptide of densi 98.3 6.8E-07 2.3E-11 75.7 5.4 60 352-421 42-101 (103)
267 2eaq_A LIM domain only protein 98.3 6E-07 2E-11 73.9 4.9 54 493-546 29-89 (90)
268 1ujd_A KIAA0559 protein; PDZ d 98.3 5.1E-07 1.7E-11 78.4 4.6 61 353-423 49-111 (117)
269 2eno_A Synaptojanin-2-binding 98.3 5.6E-07 1.9E-11 78.5 4.9 62 352-423 46-109 (120)
270 3cbz_A Dishevelled-2; PDZ doma 98.3 4.5E-07 1.5E-11 77.6 4.2 62 352-423 32-98 (108)
271 1wf8_A Neurabin-I; PDZ domain, 98.3 5.3E-07 1.8E-11 76.9 4.6 61 352-422 39-101 (107)
272 2i4s_A General secretion pathw 98.3 1.1E-06 3.6E-11 74.9 6.4 55 495-549 41-99 (105)
273 2jxo_A Ezrin-radixin-moesin-bi 98.3 2.4E-07 8.3E-12 77.7 2.1 55 493-547 34-94 (98)
274 3kzd_A TIAM-1, T-lymphoma inva 98.3 7.2E-07 2.5E-11 74.1 4.9 51 328-388 20-71 (94)
275 2edv_A FERM and PDZ domain-con 98.3 4.6E-07 1.6E-11 75.8 3.8 60 352-421 30-89 (96)
276 1uew_A Membrane associated gua 98.3 6E-07 2.1E-11 77.5 4.6 58 354-423 44-105 (114)
277 2eei_A PDZ domain-containing p 98.2 4.6E-07 1.6E-11 77.1 3.6 61 352-422 31-92 (106)
278 3nfk_A Tyrosine-protein phosph 98.2 6.2E-07 2.1E-11 76.4 4.4 60 353-420 43-107 (107)
279 2vsv_A Rhophilin-2; scaffold p 98.2 9.9E-07 3.4E-11 75.6 5.6 58 353-421 44-104 (109)
280 2vsp_A PDZ domain-containing p 98.2 5.4E-07 1.9E-11 74.4 3.7 50 497-547 36-87 (91)
281 1whd_A RGS3, regulator of G-pr 98.2 5.9E-07 2E-11 75.7 4.0 60 353-422 36-96 (100)
282 2daz_A INAD-like protein; PDZ 98.2 6.9E-07 2.4E-11 78.4 4.5 61 353-423 51-113 (124)
283 2pkt_A PDZ and LIM domain prot 98.2 9.4E-07 3.2E-11 72.9 5.0 54 493-547 28-87 (91)
284 2v90_A PDZ domain-containing p 98.2 1.8E-06 6.3E-11 71.9 6.8 54 493-547 31-90 (96)
285 1wfv_A Membrane associated gua 98.2 3.2E-07 1.1E-11 77.6 2.0 60 353-422 36-97 (103)
286 4a8c_A Periplasmic PH-dependen 98.2 1.9E-06 6.5E-11 92.1 8.4 69 353-433 363-432 (436)
287 1v62_A KIAA1719 protein; struc 98.2 3.9E-07 1.3E-11 79.2 2.5 58 354-423 43-104 (117)
288 2dm8_A INAD-like protein; PDZ 98.2 7.5E-07 2.6E-11 77.1 4.2 61 353-423 43-105 (116)
289 3e17_A Tight junction protein 98.2 4.7E-07 1.6E-11 74.4 2.6 63 345-420 14-80 (88)
290 3qe1_A Sorting nexin-27, G pro 98.2 9.9E-07 3.4E-11 75.1 4.7 57 354-422 44-103 (107)
291 2dkr_A LIN-7 homolog B; LIN-7B 98.2 1.1E-06 3.8E-11 72.7 4.7 60 352-421 29-90 (93)
292 2vz5_A TAX1-binding protein 3; 98.2 1.8E-06 6.2E-11 77.4 6.3 59 492-550 64-128 (139)
293 1uju_A Scribble; PDZ domain, c 98.2 4.1E-07 1.4E-11 78.2 2.0 61 352-422 43-105 (111)
294 1wg6_A Hypothetical protein (r 98.2 7.1E-07 2.4E-11 78.7 3.5 62 353-422 55-123 (127)
295 1ujv_A Membrane associated gua 98.2 3.7E-06 1.3E-10 70.2 7.8 55 493-547 33-92 (96)
296 2yuy_A RHO GTPase activating p 98.2 2.1E-07 7.1E-12 82.1 -0.0 59 352-422 60-121 (126)
297 2uzc_A Human pdlim5, PDZ and L 98.2 2.6E-06 8.8E-11 69.7 6.6 54 493-547 28-87 (88)
298 1wh1_A KIAA1095 protein; PDZ d 98.2 1.2E-06 4.2E-11 76.8 4.9 57 492-548 48-109 (124)
299 2csj_A TJP2 protein; PDZ domai 98.2 1E-06 3.5E-11 76.4 4.3 61 352-422 45-105 (117)
300 2gzv_A PRKCA-binding protein; 98.2 1.8E-06 6E-11 74.7 5.8 70 327-419 35-108 (114)
301 1ihj_A INAD; intermolecular di 98.2 2E-06 6.9E-11 71.9 6.0 55 492-547 37-98 (98)
302 1qav_A Alpha-1 syntrophin (res 98.2 2E-06 7E-11 70.7 5.8 57 353-419 30-88 (90)
303 3gsl_A Disks large homolog 4; 98.2 1E-06 3.6E-11 83.1 4.4 61 353-425 130-194 (196)
304 1wi4_A Synip, syntaxin binding 98.2 8.4E-07 2.9E-11 76.1 3.3 62 353-422 41-106 (109)
305 1vb7_A PDZ and LIM domain 2; P 98.2 1.4E-06 4.8E-11 72.4 4.6 54 493-547 31-90 (94)
306 3cyy_A Tight junction protein 98.2 3.4E-06 1.2E-10 69.5 7.0 50 498-548 33-85 (92)
307 3l4f_D SH3 and multiple ankyri 98.2 2E-06 6.8E-11 76.4 5.8 60 353-422 65-125 (132)
308 3b76_A E3 ubiquitin-protein li 98.2 1.7E-06 5.9E-11 75.2 5.3 59 352-420 52-112 (118)
309 1uhp_A Hypothetical protein KI 98.2 2.6E-06 8.8E-11 72.6 6.3 60 352-421 40-101 (107)
310 2jil_A GRIP1 protein, glutamat 98.2 2.1E-06 7.3E-11 71.6 5.7 55 492-547 32-93 (97)
311 3k1r_A Harmonin; protein-prote 98.1 1.4E-06 4.6E-11 82.6 4.8 59 353-422 110-169 (192)
312 1v5l_A PDZ and LIM domain 3; a 98.1 1E-06 3.5E-11 74.6 3.6 51 498-549 39-91 (103)
313 2db5_A INAD-like protein; PDZ 98.1 8.4E-07 2.9E-11 78.3 3.2 58 353-422 54-116 (128)
314 1g9o_A NHE-RF; PDZ domain, com 98.1 3.5E-06 1.2E-10 69.4 6.7 36 353-388 27-63 (91)
315 3bpu_A Membrane-associated gua 98.1 3.4E-06 1.2E-10 69.0 6.6 54 493-547 28-87 (88)
316 3pv2_A DEGQ; trypsin fold, PDZ 98.1 1.6E-06 5.4E-11 93.1 5.8 64 353-428 386-450 (451)
317 2he4_A Na(+)/H(+) exchange reg 98.1 2.9E-06 1E-10 69.7 6.2 55 492-547 28-88 (90)
318 2edp_A Fragment, shroom family 98.1 1.5E-06 5.1E-11 73.2 4.5 59 353-422 35-95 (100)
319 2rcz_A Tight junction protein 98.1 3.5E-06 1.2E-10 67.5 6.5 53 493-546 22-81 (81)
320 1um7_A Synapse-associated prot 98.1 1.1E-06 3.9E-11 75.5 3.7 60 353-422 39-100 (113)
321 1kwa_A Hcask/LIN-2 protein; PD 98.1 9.4E-07 3.2E-11 72.6 3.0 49 498-547 35-86 (88)
322 3o46_A Maguk P55 subfamily mem 98.1 1.9E-06 6.6E-11 71.3 4.8 59 352-422 27-89 (93)
323 1te0_A Protease DEGS; two doma 98.1 3.3E-06 1.1E-10 86.4 7.3 57 492-548 244-305 (318)
324 1ueq_A Membrane associated gua 98.1 2.6E-06 9E-11 74.5 5.6 61 493-553 45-113 (123)
325 1x6d_A Interleukin-16; PDZ dom 98.1 5.7E-07 2E-11 78.3 1.2 64 352-424 41-106 (119)
326 1g9o_A NHE-RF; PDZ domain, com 98.1 2.8E-06 9.5E-11 70.0 5.3 57 492-548 27-89 (91)
327 2z17_A Pleckstrin homology SEC 98.1 1E-06 3.6E-11 74.7 2.3 54 352-417 47-103 (104)
328 2q3g_A PDZ and LIM domain prot 98.1 3.1E-06 1.1E-10 69.4 5.0 54 493-547 28-87 (89)
329 2qt5_A Glutamate receptor-inte 98.1 1.8E-06 6.2E-11 82.1 4.1 60 353-424 135-198 (200)
330 2vsv_A Rhophilin-2; scaffold p 98.1 2.9E-06 1E-10 72.7 5.0 50 496-545 52-103 (109)
331 2d8i_A T-cell lymphoma invasio 98.1 1.7E-06 5.9E-11 74.8 3.5 57 353-421 44-101 (114)
332 1vae_A Rhophilin 2, rhophilin, 98.1 1.2E-06 4.2E-11 75.3 2.4 56 353-419 36-94 (111)
333 2koj_A Partitioning defective 98.1 3.9E-06 1.4E-10 71.9 5.5 60 492-551 39-106 (111)
334 3cbz_A Dishevelled-2; PDZ doma 98.1 5.9E-06 2E-10 70.6 6.6 56 492-547 33-97 (108)
335 3sfj_A TAX1-binding protein 3; 98.1 5.9E-06 2E-10 69.8 6.5 55 491-545 44-104 (104)
336 2kv8_A RGS12, regulator of G-p 98.0 3.1E-06 1.1E-10 68.4 4.5 48 497-545 32-81 (83)
337 2byg_A Channel associated prot 98.0 5.1E-06 1.7E-10 72.1 6.1 56 492-548 54-116 (117)
338 3tsv_A Tight junction protein 98.0 4.7E-06 1.6E-10 73.1 5.8 56 492-547 51-113 (124)
339 3tsz_A Tight junction protein 98.0 2.2E-06 7.4E-11 90.2 4.3 62 353-422 31-93 (391)
340 2i04_A Membrane-associated gua 98.0 7.8E-06 2.7E-10 66.3 6.7 52 493-544 26-85 (85)
341 2yub_A LIMK-2, LIM domain kina 98.0 3.8E-06 1.3E-10 73.0 5.1 49 498-547 56-106 (118)
342 2hga_A Conserved protein MTH13 98.0 1.2E-05 4.3E-10 70.5 8.3 59 492-552 25-88 (125)
343 2fcf_A Multiple PDZ domain pro 98.0 6.7E-06 2.3E-10 69.4 6.3 55 492-547 39-100 (103)
344 2ejy_A 55 kDa erythrocyte memb 98.0 5.4E-06 1.9E-10 69.4 5.5 52 493-545 37-95 (97)
345 1fc6_A Photosystem II D1 prote 98.0 8.9E-06 3.1E-10 85.6 8.5 71 352-431 98-172 (388)
346 3khf_A Microtubule-associated 98.0 7.4E-06 2.5E-10 68.6 6.3 49 498-547 44-94 (99)
347 2krg_A Na(+)/H(+) exchange reg 98.0 1.2E-06 4.2E-11 84.4 1.7 60 353-424 33-96 (216)
348 1v5q_A GRIP1 homolog, glutamat 98.0 2.1E-06 7.3E-11 75.0 3.1 51 498-548 55-109 (122)
349 1qau_A Neuronal nitric oxide s 98.0 8.3E-06 2.8E-10 69.9 6.7 55 493-547 27-88 (112)
350 2d90_A PDZ domain containing p 98.0 1.1E-05 3.8E-10 67.9 7.4 54 492-546 30-89 (102)
351 1uep_A Membrane associated gua 98.0 4.6E-06 1.6E-10 70.5 5.0 50 498-547 44-97 (103)
352 2kom_A Partitioning defective 98.0 7E-06 2.4E-10 71.6 6.3 55 492-546 58-120 (121)
353 2fne_A Multiple PDZ domain pro 98.0 6.5E-06 2.2E-10 71.4 6.0 55 493-548 54-115 (117)
354 2yt7_A Amyloid beta A4 precurs 98.0 1.6E-05 5.3E-10 67.0 7.9 53 493-545 38-98 (101)
355 1d5g_A Human phosphatase HPTP1 98.0 1E-05 3.5E-10 67.3 6.7 54 493-547 34-94 (96)
356 2edz_A PDZ domain-containing p 98.0 6.2E-06 2.1E-10 71.1 5.5 54 492-546 38-97 (114)
357 4e34_A Golgi-associated PDZ an 98.0 6.1E-06 2.1E-10 67.3 5.1 57 353-419 28-86 (87)
358 2ego_A General receptor for ph 98.0 1.2E-05 4.2E-10 66.9 7.1 52 493-545 38-95 (96)
359 2o2t_A Multiple PDZ domain pro 98.0 6.5E-06 2.2E-10 71.2 5.5 55 492-547 49-111 (117)
360 2w4f_A Protein LAP4; structura 98.0 4.6E-06 1.6E-10 69.5 4.4 57 492-548 34-95 (97)
361 1rgw_A ZAsp protein; PDZ, cyph 98.0 2.9E-06 9.8E-11 68.9 3.0 48 498-546 35-84 (85)
362 1uew_A Membrane associated gua 98.0 4.9E-06 1.7E-10 71.7 4.7 51 497-548 52-105 (114)
363 3r0h_A INAD, inactivation-NO-a 98.0 8E-06 2.8E-10 77.8 6.6 59 352-420 135-195 (206)
364 1vae_A Rhophilin 2, rhophilin, 98.0 2.4E-06 8.1E-11 73.5 2.5 48 498-545 46-95 (111)
365 3hpk_A Protein interacting wit 98.0 6.4E-06 2.2E-10 72.2 5.3 57 353-419 45-103 (125)
366 1lcy_A HTRA2 serine protease; 98.0 1.8E-05 6.2E-10 81.2 9.4 83 451-549 228-315 (325)
367 3egg_C Spinophilin; PP1, serin 98.0 6.7E-06 2.3E-10 76.2 5.6 59 352-420 110-170 (170)
368 1p1d_A PDZ45, glutamate recept 98.0 3.9E-06 1.3E-10 79.6 4.0 58 352-421 134-195 (196)
369 1wif_A RSGI RUH-020, riken cDN 98.0 4.3E-06 1.5E-10 73.5 4.0 49 497-545 58-110 (126)
370 2eeh_A PDZ domain-containing p 98.0 8.6E-06 3E-10 68.4 5.7 53 493-547 37-95 (100)
371 1wi2_A Riken cDNA 2700099C19; 98.0 9.7E-06 3.3E-10 68.6 6.0 52 493-546 42-99 (104)
372 2jre_A C60-1 PDZ domain peptid 98.0 4.5E-06 1.5E-10 71.1 3.9 55 492-547 44-105 (108)
373 2fe5_A Presynaptic protein SAP 98.0 1.3E-05 4.3E-10 66.4 6.5 54 492-546 33-93 (94)
374 3r68_A Na(+)/H(+) exchange reg 98.0 6.7E-06 2.3E-10 68.2 4.9 56 493-548 30-91 (95)
375 3soe_A Membrane-associated gua 98.0 1.5E-05 5.3E-10 68.4 7.2 62 353-424 34-96 (113)
376 2eeg_A PDZ and LIM domain prot 98.0 4.4E-06 1.5E-10 69.3 3.7 49 498-547 42-92 (94)
377 3qik_A Phosphatidylinositol 3, 97.9 8.3E-06 2.8E-10 68.3 5.3 47 497-543 48-98 (101)
378 1v6b_A Harmonin isoform A1; st 97.9 1.5E-06 5.1E-11 75.6 0.7 59 354-420 44-106 (118)
379 2d92_A INAD-like protein; PDZ 97.9 4E-06 1.4E-10 71.6 3.4 60 352-420 43-104 (108)
380 1x5q_A LAP4 protein; PDZ domai 97.9 1.3E-05 4.5E-10 68.4 6.7 55 492-547 46-106 (110)
381 1y7n_A Amyloid beta A4 precurs 97.9 5.3E-06 1.8E-10 68.5 3.9 48 497-545 40-89 (90)
382 2d92_A INAD-like protein; PDZ 97.9 1.2E-05 4.3E-10 68.4 6.4 54 492-545 44-104 (108)
383 2f5y_A Regulator of G-protein 97.9 5.7E-06 1.9E-10 68.2 4.1 50 498-548 34-85 (91)
384 2iwq_A Multiple PDZ domain pro 97.9 1.3E-05 4.5E-10 70.1 6.6 54 492-546 59-119 (123)
385 1wi4_A Synip, syntaxin binding 97.9 1E-05 3.5E-10 69.2 5.8 55 493-547 42-106 (109)
386 2kjd_A Sodium/hydrogen exchang 97.9 7.4E-06 2.5E-10 72.0 5.0 55 493-547 34-94 (128)
387 2r4h_A Membrane-associated gua 97.9 2E-05 6.7E-10 67.7 7.5 55 493-548 50-111 (112)
388 3ngh_A PDZ domain-containing p 97.9 5.4E-06 1.8E-10 70.4 3.9 53 493-546 27-85 (106)
389 3soe_A Membrane-associated gua 97.9 2.4E-05 8.4E-10 67.1 8.0 48 500-547 44-94 (113)
390 2i1n_A Discs, large homolog 3; 97.9 1.1E-05 3.9E-10 67.8 5.8 55 492-547 34-95 (102)
391 1r6j_A Syntenin 1; PDZ, membra 97.9 7.1E-06 2.4E-10 66.4 4.2 54 356-419 26-80 (82)
392 2dmz_A INAD-like protein; PDZ 97.9 1E-05 3.4E-10 71.3 5.5 55 492-547 46-107 (129)
393 1wf7_A Enigma homologue protei 97.9 8.9E-06 3E-10 68.7 4.9 54 493-547 30-89 (103)
394 1wha_A KIAA0147 protein, scrib 97.9 1E-05 3.5E-10 68.6 5.2 54 492-546 38-98 (105)
395 1n7e_A AMPA receptor interacti 97.9 1.5E-05 5.1E-10 66.5 6.1 49 498-547 40-91 (97)
396 1whd_A RGS3, regulator of G-pr 97.9 4.7E-06 1.6E-10 70.1 3.0 49 497-546 45-95 (100)
397 2djt_A Unnamed protein product 97.9 9.5E-06 3.3E-10 68.6 5.0 49 498-547 48-99 (104)
398 3o46_A Maguk P55 subfamily mem 97.9 1.8E-05 6.1E-10 65.4 6.4 54 493-547 29-89 (93)
399 1ujd_A KIAA0559 protein; PDZ d 97.9 1.1E-05 3.6E-10 70.0 5.3 55 493-548 50-111 (117)
400 1wfg_A Regulating synaptic mem 97.9 1.5E-05 5E-10 70.6 6.2 54 493-546 66-127 (131)
401 2jik_A Synaptojanin-2 binding 97.9 1.2E-05 4E-10 67.6 5.2 55 492-547 37-98 (101)
402 2kpk_A Membrane-associated gua 97.9 1.6E-05 5.3E-10 70.2 6.2 58 493-550 44-109 (129)
403 2dc2_A GOPC, golgi associated 97.9 1.2E-05 4.2E-10 67.9 5.3 60 353-422 35-96 (103)
404 2dls_A PDZ-rhogef, RHO guanine 97.9 2.3E-05 7.9E-10 64.8 6.8 48 497-546 38-87 (93)
405 2q9v_A Membrane-associated gua 97.9 1E-05 3.4E-10 66.4 4.6 54 493-546 28-89 (90)
406 1q3o_A Shank1; PDZ, GKAP, pept 97.9 1.8E-05 6.1E-10 67.5 6.2 52 493-545 46-103 (109)
407 2awx_A Synapse associated prot 97.9 2E-05 7E-10 66.7 6.5 57 492-549 33-96 (105)
408 2vwr_A Ligand of NUMB protein 97.9 1.1E-05 3.8E-10 66.9 4.7 56 492-548 29-91 (95)
409 2cs5_A Tyrosine-protein phosph 97.9 7.7E-06 2.6E-10 71.0 3.8 62 353-422 41-107 (119)
410 2e7k_A Maguk P55 subfamily mem 97.9 1.7E-05 5.8E-10 65.4 5.6 52 493-545 30-87 (91)
411 2h2b_A Tight junction protein 97.9 1.8E-05 6.3E-10 67.1 6.0 56 492-548 39-99 (107)
412 1va8_A Maguk P55 subfamily mem 97.9 1.8E-05 6.2E-10 68.1 6.0 54 493-547 49-109 (113)
413 4amh_A Disks large homolog 1; 97.9 2.5E-05 8.5E-10 66.4 6.8 54 492-546 32-92 (106)
414 1b8q_A Protein (neuronal nitri 97.8 8.3E-06 2.8E-10 71.7 3.8 57 493-549 34-97 (127)
415 2opg_A Multiple PDZ domain pro 97.8 2.2E-05 7.7E-10 65.4 6.3 54 493-547 31-91 (98)
416 1uit_A Human discs large 5 pro 97.8 8.5E-06 2.9E-10 70.5 3.7 57 492-548 42-103 (117)
417 3shw_A Tight junction protein 97.8 7E-06 2.4E-10 87.8 3.8 62 353-422 23-85 (468)
418 2db5_A INAD-like protein; PDZ 97.8 2E-05 7E-10 69.3 6.1 54 492-546 54-115 (128)
419 1v62_A KIAA1719 protein; struc 97.8 2E-05 7E-10 68.2 6.0 57 493-550 43-106 (117)
420 3axa_A Afadin, nectin-3, prote 97.8 3.3E-05 1.1E-09 65.4 7.2 56 492-548 38-100 (106)
421 3k50_A Putative S41 protease; 97.8 1.5E-05 5E-10 84.0 5.8 57 354-423 91-148 (403)
422 1nf3_C PAR-6B; semi-CRIB motif 97.8 1.9E-05 6.4E-10 69.6 5.6 55 492-547 65-126 (128)
423 1m5z_A GRIP, AMPA receptor int 97.8 3.3E-05 1.1E-09 63.5 6.7 53 492-545 32-90 (91)
424 1i16_A Interleukin 16, LCF; cy 97.8 2.1E-05 7.1E-10 69.5 5.8 49 498-546 67-118 (130)
425 1i16_A Interleukin 16, LCF; cy 97.8 1.3E-05 4.4E-10 70.9 4.4 62 352-422 56-119 (130)
426 3qe1_A Sorting nexin-27, G pro 97.8 1.2E-05 4.2E-10 68.3 4.0 48 498-546 53-102 (107)
427 1x6d_A Interleukin-16; PDZ dom 97.8 1.2E-05 4E-10 69.8 3.9 55 493-547 43-104 (119)
428 2yuy_A RHO GTPase activating p 97.8 4.5E-06 1.5E-10 73.4 1.2 50 497-547 70-121 (126)
429 2iwn_A Multiple PDZ domain pro 97.8 2.3E-05 8E-10 65.0 5.5 54 493-547 34-94 (97)
430 2eno_A Synaptojanin-2-binding 97.8 3.3E-05 1.1E-09 67.1 6.7 55 492-547 47-108 (120)
431 1q7x_A PDZ2B domain of PTP-BAS 97.8 1.8E-05 6.1E-10 67.4 4.8 55 492-547 42-103 (108)
432 2dm8_A INAD-like protein; PDZ 97.8 1.8E-05 6.3E-10 68.2 5.0 55 493-548 44-105 (116)
433 3gge_A PDZ domain-containing p 97.8 4.5E-05 1.5E-09 63.2 7.0 58 354-419 29-88 (95)
434 1ufx_A KIAA1526 protein; PDZ d 97.8 8.3E-06 2.8E-10 69.0 2.6 59 354-422 33-98 (103)
435 1mfg_A ERB-B2 interacting prot 97.8 5.8E-05 2E-09 62.5 7.7 52 492-545 35-92 (95)
436 1uez_A KIAA1526 protein; PDZ d 97.8 1.1E-05 3.9E-10 67.7 3.3 55 492-547 35-94 (101)
437 3b76_A E3 ubiquitin-protein li 97.8 3.2E-05 1.1E-09 67.1 6.2 54 492-546 53-113 (118)
438 1y8t_A Hypothetical protein RV 97.8 5.3E-05 1.8E-09 77.6 8.9 57 492-548 242-304 (324)
439 3e17_A Tight junction protein 97.8 4.3E-05 1.5E-09 62.5 6.4 52 493-545 22-80 (88)
440 1lvm_A Catalytic domain of the 97.7 0.0011 3.7E-08 63.3 16.8 171 118-319 19-202 (229)
441 2qg1_A Multiple PDZ domain pro 97.7 2.5E-05 8.7E-10 64.3 4.8 54 493-547 30-90 (92)
442 2dlu_A INAD-like protein; PDZ 97.7 2.9E-05 9.8E-10 66.4 5.2 54 493-547 39-99 (111)
443 1r6j_A Syntenin 1; PDZ, membra 97.7 1.5E-05 5.3E-10 64.4 3.2 48 495-543 30-79 (82)
444 2edv_A FERM and PDZ domain-con 97.7 2.6E-05 8.9E-10 64.9 4.7 49 496-546 39-89 (96)
445 1um1_A KIAA1849 protein, RSGI 97.7 4.6E-05 1.6E-09 65.0 6.3 54 492-546 36-96 (110)
446 2lob_A Golgi-associated PDZ an 96.9 5E-06 1.7E-10 71.5 0.0 34 353-386 53-88 (112)
447 2iwo_A Multiple PDZ domain pro 97.7 4.1E-05 1.4E-09 66.6 5.8 54 493-547 54-114 (120)
448 2edp_A Fragment, shroom family 97.7 2.3E-05 8E-10 65.7 4.0 54 493-547 36-95 (100)
449 3l4f_D SH3 and multiple ankyri 97.7 8E-05 2.7E-09 65.9 7.7 53 493-546 66-124 (132)
450 3k1r_A Harmonin; protein-prote 97.7 4.4E-05 1.5E-09 72.1 6.4 56 493-550 111-172 (192)
451 2g5m_B Neurabin-2; spinophilin 97.7 3.6E-05 1.2E-09 66.0 5.3 55 492-547 35-96 (113)
452 2dkr_A LIN-7 homolog B; LIN-7B 97.7 4.9E-05 1.7E-09 62.6 5.9 53 493-546 31-90 (93)
453 2gzv_A PRKCA-binding protein; 97.7 5.1E-05 1.8E-09 65.3 6.2 46 498-544 60-108 (114)
454 2ehr_A INAD-like protein; PDZ 97.7 9.5E-05 3.2E-09 63.8 7.9 54 492-546 50-110 (117)
455 2cs5_A Tyrosine-protein phosph 97.7 5.6E-05 1.9E-09 65.5 6.4 55 493-547 42-107 (119)
456 1wfv_A Membrane associated gua 97.7 2.1E-05 7.3E-10 66.1 3.5 54 493-547 37-97 (103)
457 1wg6_A Hypothetical protein (r 97.7 3.2E-05 1.1E-09 68.0 4.8 54 493-546 56-122 (127)
458 3nfk_A Tyrosine-protein phosph 97.7 5.2E-05 1.8E-09 64.3 5.9 53 493-545 44-107 (107)
459 1n7t_A 99-MER peptide of densi 97.7 8E-05 2.7E-09 62.7 7.0 53 492-546 43-101 (103)
460 2z17_A Pleckstrin homology SEC 97.7 3.3E-05 1.1E-09 65.2 4.6 50 492-542 48-103 (104)
461 2qkv_A Inactivation-NO-after-p 97.7 5.5E-05 1.9E-09 62.9 5.8 52 493-545 32-90 (96)
462 1ky9_A Protease DO, DEGP, HTRA 97.7 6.4E-06 2.2E-10 88.3 0.0 65 352-428 382-447 (448)
463 3kzd_A TIAM-1, T-lymphoma inva 97.7 9.6E-05 3.3E-09 61.2 7.1 48 493-543 36-89 (94)
464 1wf8_A Neurabin-I; PDZ domain, 97.6 4.7E-05 1.6E-09 64.6 5.3 54 492-546 40-100 (107)
465 1uju_A Scribble; PDZ domain, c 97.6 1.5E-05 5.1E-10 68.2 2.2 54 492-546 44-104 (111)
466 3hpk_A Protein interacting wit 97.6 6.7E-05 2.3E-09 65.6 6.3 46 498-544 55-103 (125)
467 1ufx_A KIAA1526 protein; PDZ d 97.6 1.6E-05 5.6E-10 67.2 2.2 50 497-546 41-97 (103)
468 1x5n_A Harmonin; PDZ domain, u 97.6 7E-05 2.4E-09 64.3 6.3 52 493-546 42-100 (114)
469 1uhp_A Hypothetical protein KI 97.6 7.9E-05 2.7E-09 63.2 6.5 54 492-546 41-101 (107)
470 1qav_A Alpha-1 syntrophin (res 97.6 9.1E-05 3.1E-09 60.6 6.4 51 493-544 31-88 (90)
471 2d8i_A T-cell lymphoma invasio 97.6 4.3E-05 1.5E-09 65.8 4.3 51 493-546 45-101 (114)
472 3egg_C Spinophilin; PP1, serin 97.6 9.5E-05 3.2E-09 68.4 6.9 53 492-545 111-170 (170)
473 2la8_A Inactivation-NO-after-p 97.6 6.9E-05 2.4E-09 63.6 5.3 52 493-545 26-84 (106)
474 3i4w_A Disks large homolog 4; 97.5 0.0001 3.5E-09 62.0 6.0 53 493-546 36-95 (104)
475 3qo6_A Protease DO-like 1, chl 97.5 4.5E-05 1.5E-09 78.9 4.5 57 492-548 251-323 (348)
476 2daz_A INAD-like protein; PDZ 97.5 7.7E-05 2.6E-09 65.2 5.3 54 493-547 52-112 (124)
477 1v6b_A Harmonin isoform A1; st 97.5 3.4E-05 1.2E-09 66.9 3.0 48 498-545 53-106 (118)
478 1k32_A Tricorn protease; prote 97.5 0.00016 5.6E-09 85.4 9.6 66 352-429 747-824 (1045)
479 2b0f_A Picornain 3C (protease 97.5 0.004 1.4E-07 57.7 16.7 145 151-309 25-174 (182)
480 2eei_A PDZ domain-containing p 97.5 5.9E-05 2E-09 63.8 4.1 53 493-546 33-91 (106)
481 3qzr_A 3C protein; chymotrypsi 97.5 0.0071 2.4E-07 56.1 18.0 147 150-309 28-179 (187)
482 1z87_A Alpha-1-syntrophin; pro 97.5 3.4E-05 1.2E-09 76.4 2.5 60 353-422 103-164 (263)
483 1w9e_A Syntenin 1; cell adhesi 97.5 0.00014 4.7E-09 66.8 6.6 53 493-545 28-86 (166)
484 4e34_A Golgi-associated PDZ an 97.4 0.00021 7.1E-09 58.0 6.2 51 493-544 29-86 (87)
485 3q3y_A HEVB EV93 3C protease; 97.4 0.0085 2.9E-07 55.5 17.4 147 150-309 26-177 (191)
486 2csj_A TJP2 protein; PDZ domai 97.4 0.00012 4E-09 63.2 4.6 57 492-550 46-108 (117)
487 2dc2_A GOPC, golgi associated 97.4 0.00024 8.3E-09 59.8 6.4 53 493-546 36-95 (103)
488 1um7_A Synapse-associated prot 97.3 0.00011 3.8E-09 62.8 3.7 49 497-546 48-99 (113)
489 2pka_A Kallikrein A; serine pr 97.3 0.00039 1.3E-08 55.5 6.5 42 135-178 8-51 (80)
490 3zve_A 3C protease; hydrolase, 97.3 0.0083 2.8E-07 56.0 16.3 145 150-309 24-175 (190)
491 3tsz_A Tight junction protein 97.3 0.00024 8.1E-09 74.6 6.5 57 492-548 31-94 (391)
492 2qbw_A PDZ-fibronectin fusion 97.3 0.0006 2.1E-08 64.1 8.4 52 491-544 23-80 (195)
493 2krg_A Na(+)/H(+) exchange reg 97.3 5.9E-05 2E-09 72.6 1.4 49 498-547 43-94 (216)
494 3num_A Serine protease HTRA1; 97.3 3.8E-05 1.3E-09 79.0 0.0 53 495-549 261-313 (332)
495 1tp5_A Presynaptic density pro 97.3 0.00027 9.3E-09 61.0 5.4 53 493-546 39-98 (119)
496 1cqq_A Type 2 rhinovirus 3C pr 97.3 0.017 5.7E-07 53.6 17.6 147 150-309 24-175 (180)
497 2lob_A Golgi-associated PDZ an 96.3 5.1E-05 1.8E-09 65.1 0.0 48 495-543 60-110 (112)
498 4fgm_A Aminopeptidase N family 97.2 0.00026 8.9E-09 78.3 5.6 57 492-549 496-557 (597)
499 4fln_A Protease DO-like 2, chl 97.2 0.00055 1.9E-08 74.4 7.8 78 328-417 374-469 (539)
500 3shw_A Tight junction protein 97.1 0.00052 1.8E-08 73.3 6.5 56 492-547 23-85 (468)
No 1
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=100.00 E-value=1.9e-79 Score=666.49 Aligned_cols=455 Identities=50% Similarity=0.865 Sum_probs=409.0
Q ss_pred CCCCcEEEEeeeeCCCCCCccccCCCcceEEEEEEEcCCEEEecccccCCCceEEEEEcCCCcEEEEEEEEEcCCCCEEE
Q 008087 121 AMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAM 200 (578)
Q Consensus 121 ~~~sVV~I~~~~~~~~~~~p~~~~~~~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~g~~~~a~vv~~d~~~DlAl 200 (578)
..+|||+|++....++|..||+...+..+.||||||++||||||+|||.++..+.|++.+|++.|.|++++.|+.+||||
T Consensus 46 ~~~sVV~I~~~~~~~~~~~Pw~~~~~~~s~GSGfiI~dG~IlTN~HVV~~a~~i~V~~~~dg~~~~A~vv~~D~~~DLAv 125 (539)
T 4fln_A 46 FLNAVVKVYCTHTAPDYSLPWQKQRQFTSTGSAFMIGDGKLLTNAHCVEHDTQVKVKRRGDDRKYVAKVLVRGVDCDIAL 125 (539)
T ss_dssp HHTTEEEEEEEECCBCSSSTTSBCCCEEEEEEEEEEETTEEEECGGGGTTEEEEEEECTTCCCCEEEEEEEEETTTTEEE
T ss_pred cCCCeEEEEEEecCCCCCCccccCCccceEEEEEEEECCEEEEChHHcCCCCeEEEEEccCCEEEEEEEEEECCCCCEEE
Confidence 34699999999999999999999999999999999999999999999999999999997799999999999999999999
Q ss_pred EEEeeCCCCCCeeeEEcCCCCCCCCcEEEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCccceEE
Q 008087 201 LTVEDDEFWEGVLPVEFGELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAF 280 (578)
Q Consensus 201 Lkv~~~~~~~~~~~l~l~~~~~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGPlv 280 (578)
||++...++..+.++.+++++.+|++|+++|||+++...+++.|+||++++..+..+.....+||+|+++++||||||||
T Consensus 126 Lkv~~~~~~~~~~pl~~g~~~~vGd~V~aiG~P~g~~~~tvT~GIVSa~~r~~~~~~~~~~~~IQtDAaInpGnSGGPLv 205 (539)
T 4fln_A 126 LSVESEDFWKGAEPLRLGHLPRLQDSVTVVGYPLGGDTISVTKGVVSRIEVTSYAHGSSDLLGIQIDAAINPGNSGGPAF 205 (539)
T ss_dssp EEECCSSSSTTCCCCCBCCCCCTTCEEEEEECCSSSCCCEEEEEEEEEEEEEECTTSCCEEEEEEESSCCCTTTTTSEEE
T ss_pred EEEeCCcCCcCCceeecCCcCcCCCeEEEEEcCCCCCCCcEEeEEECcccccccCCCCcceeEEEEEeEecCCCccchhc
Confidence 99998876667788999998899999999999998776699999999999887776666667899999999999999999
Q ss_pred ccCCeEEEEEeccccccccCCceeeecchhHHHHHHHHHHcCceeccccCCcccccccChhhhhhhccccCCCCcEEEEe
Q 008087 281 NDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEKNGAYTGFPLLGVEWQKMENPDLRVAMSMKADQKGVRIRRV 360 (578)
Q Consensus 281 n~~G~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~~g~v~~~~~lGi~~~~~~~~~~~~~lgl~~~~~Gv~V~~V 360 (578)
|.+|+||||+++.+...+..+++||||++.+++++++|+++|++.+|||||+.++.+.++.+++.+||+. ..|++|..|
T Consensus 206 n~~GeVIGIntai~~~~~~~gigfAIP~~~v~~vl~~l~~~G~~~~r~~LGv~~~~~~~~~~~~~~~l~~-~~Gv~V~~V 284 (539)
T 4fln_A 206 NDQGECIGVAFQVYRSEETENIGYVIPTTVVSHFLTDYERNGKYTGYPCLGVLLQKLENPALRECLKVPT-NEGVLVRRV 284 (539)
T ss_dssp CSSSCEEEEECCCC-----CCCEEEEEHHHHHHHHHHHHTTTSCCCCCBCCEEEEECCCHHHHHHHTCSS-SBCEEEEEE
T ss_pred cCCCcEEEEEEEEecCCCCCcceecccHHHHHHHHHHHHHcCeEEeeeecceEEEecCCHHHHHhcCCCC-cCceeeecc
Confidence 9999999999998766667899999999999999999999999877999999999987889999999986 579999999
Q ss_pred CCCCcccCCCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEEEEEecccccccCCC
Q 008087 361 DPTAPESEVLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNITLATHRRLIPSH 440 (578)
Q Consensus 361 ~p~spA~~GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v~l~~~~~~~~~~ 440 (578)
.++|||+++||+||+|++|||++|.+.+++.++..+++.|..++....+|++++|+|+|+|+++++++++...+...+.+
T Consensus 285 ~~~spA~~al~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~~~v~Vtl~~~~~~~~~~ 364 (539)
T 4fln_A 285 EPTSDASKVLKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHKKVQVVLRPRVHLVPYH 364 (539)
T ss_dssp CTTSGGGGTCCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEEEEEEEECBCCCCSSCSC
T ss_pred cCCChHHhCccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEEccCccccccc
Confidence 99999988999999999999999999999888888888899999999999999999999999999999999998888888
Q ss_pred CCCCCCCceeeccEEEeeh-HHHHHHhchhhhhhhhhccccccccccccCCCceEEEEee----cCCcCCCCCCCEEEEe
Q 008087 441 NKGRPPSYYIIAGFVFSRC-LYLISVLSMERIMNMKLRSSFWTSSCIQCHNCQMSSLLWC----LRSPLCLNCFNKVLAF 515 (578)
Q Consensus 441 ~~~~~p~~~~~~Gl~~~~~-p~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~vvvs~v----~A~~aGl~~GD~I~~V 515 (578)
.....|+|++++||+|+++ +.+..+++.+. .+++++.... +.+.+...+++|+++++ ++..+|++.||+|++|
T Consensus 365 ~~~~~p~~~~~~Gl~f~~Lt~~~~~~~~~~~-~~~~l~~~~~-~~~~~~~~~~gVvvs~V~~~s~a~~~g~~~gdiI~~v 442 (539)
T 4fln_A 365 IDGGQPSYIIVAGLVFTPLSEPLIEEECEDT-IGLKLLTKAR-YSVARFRGEQIVILSQVLANEVNIGYEDMNNQQVLKF 442 (539)
T ss_dssp TTSSCCCCCCSTTEEEEECCHHHHTTSCSSS-SCHHHHHHHH-HCCCSSTTCCCEEEEEECCCGGGTTCSSCCSEEEEEE
T ss_pred cccCCCccccccceEEeeCCHHHHHhhcccc-cCceeeehhh-hhhhccCCceEEEEEEecCCchhhhcCCCCCCEEEeE
Confidence 8888999999999999999 66665555322 2333333322 34445566789999987 5777888999999999
Q ss_pred CCeecCCHHHHHHHHHhcCCCeEEEEEecCeEEEEechhhhHHHHHHHHHcCCCcCCCcCcCC
Q 008087 516 NGNPVKNLKSLANMVENCDDEFLKFDLEYDQVVVLRTKTSKAATLDILATHCIPSAMSDDLKN 578 (578)
Q Consensus 516 NG~~V~~~~~l~~~l~~~~~~~v~l~v~R~~~~~l~~~~~~~~~~~i~~~~~i~~~~~~~~~~ 578 (578)
||++|+|++||.++|+++++++++|+++++..++|+++++++++++||++|+|||+||+||..
T Consensus 443 Ng~~V~s~~~l~~~l~~~k~~~l~~~~~~~~~ivL~~~~~~~~~~~Il~~~~I~~~~S~dl~~ 505 (539)
T 4fln_A 443 NGIPIRNIHHLAHLIDMCKDKYLVFEFEDNYVAVLEREASNSASLCILKDYGIPSERSADLLE 505 (539)
T ss_dssp TTEECCSHHHHHHHHHTCCSSEEEEEETTSCEEEEEHHHHHHHHHHHHTTTTCSCSSCGGGGS
T ss_pred CCEEcCCHHHHHHHHHHcCCCeEEEEECCCEEEEEEHHHHHHhHHHHHHhcCCCcccCcchhh
Confidence 999999999999999999999999999999999999999999999999999999999999963
No 2
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=100.00 E-value=9.3e-57 Score=483.79 Aligned_cols=388 Identities=21% Similarity=0.286 Sum_probs=314.4
Q ss_pred cccccccCCCCcEEEEeeeeCCC-----------C--CCccccCCCcceEEEEEEEc-C-CEEEecccccCCCceEEEEE
Q 008087 114 GVARVVPAMDAVVKVFCVHTEPN-----------F--SLPWQRKRQYSSSSSGFAIG-G-RRVLTNAHSVEHYTQVKLKK 178 (578)
Q Consensus 114 ~~~~~~~~~~sVV~I~~~~~~~~-----------~--~~p~~~~~~~~~~GsGfvI~-~-g~ILT~aHvV~~~~~i~V~~ 178 (578)
....++++.+|||.|.+...... + ..||+......+.||||+|+ + ||||||+|||.++..+.|++
T Consensus 15 ~~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfii~~~~G~IlTn~Hvv~~a~~i~V~~ 94 (436)
T 4a8c_A 15 LAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQL 94 (436)
T ss_pred HHHHHHhhCCcEEEEEEEEeecccccCcchhhhhcccccccccCCcCceEEEEEEEECCCCEEEECHHHhCCCCEEEEEe
Confidence 46677888889999988764321 0 12454444557899999997 4 89999999999999999999
Q ss_pred cCCCcEEEEEEEEEcCCCCEEEEEEeeCCCCCCeeeEEcCCCC--CCCCcEEEEeecCCCCcceEEEeEEeceeeeeecC
Q 008087 179 RGSDTKYLATVLAIGTECDIAMLTVEDDEFWEGVLPVEFGELP--ALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVH 256 (578)
Q Consensus 179 ~~~g~~~~a~vv~~d~~~DlAlLkv~~~~~~~~~~~l~l~~~~--~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~ 256 (578)
.+++.++|++++.|+.+||||||++... .++++.|+++. ..|++|+++|||++... +++.|+|+++.+....
T Consensus 95 -~dg~~~~a~vv~~d~~~DlAllkv~~~~---~l~~~~l~~s~~~~~G~~v~aiG~P~g~~~-~vt~G~vs~~~r~~~~- 168 (436)
T 4a8c_A 95 -NDGREFDAKLIGSDDQSDIALLQIQNPS---KLTQIAIADSDKLRVGDFAVAVGNPFGLGQ-TATSGIVSALGRSGLN- 168 (436)
T ss_pred -CCCCEEEEEEEEEcCCCCEEEEEecCCC---CCceEeccCcccCCCCCEEEEEEcCCCCCc-cEEEEEEeeecccccC-
Confidence 5999999999999999999999997653 68899998643 56999999999999765 8999999998775222
Q ss_pred CceeeeEEEEecCCCCCCccceEEccCCeEEEEEecccccc-ccCCceeeecchhHHHHHHHHHHcCceeccccCCcccc
Q 008087 257 GSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHE-DVENIGYVIPTPVIMHFIQDYEKNGAYTGFPLLGVEWQ 335 (578)
Q Consensus 257 ~~~~~~~i~~da~i~~G~SGGPlvn~~G~vVGI~~~~~~~~-~~~~~~~aiPi~~i~~~l~~l~~~g~v~~~~~lGi~~~ 335 (578)
...+..+||+|+++++|||||||||.+|+||||+++.+... +..+++|+||++.+++++++|+++|++. |+|||+.++
T Consensus 169 ~~~~~~~iq~da~i~~GnSGGPl~n~~G~vvGI~~~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g~v~-r~~lGv~~~ 247 (436)
T 4a8c_A 169 LEGLENFIQTDASINRGNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIK-RGLLGIKGT 247 (436)
T ss_pred CCCccCEEEEcCccCCCCCcCcccCCCCEEEEEEeeeccCCCCceeEEEEEehHHHHHHHHHHHhccccc-cccCceEec
Confidence 22234689999999999999999999999999999876543 3468999999999999999999999998 999999999
Q ss_pred cccChhhhhhhccccCCCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEE
Q 008087 336 KMENPDLRVAMSMKADQKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAA 414 (578)
Q Consensus 336 ~~~~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~ 414 (578)
.+ ++++++.||++. ..|++|..|.++|||++ ||++||+|++|||++|.+|.+ +...+.....|++++
T Consensus 248 ~~-~~~~a~~~gl~~-~~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~v~~~~~----------l~~~l~~~~~g~~v~ 315 (436)
T 4a8c_A 248 EM-SADIAKAFNLDV-QRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAE----------LRSRIATTEPGTKVK 315 (436)
T ss_pred cc-CHHHHHHhCCCC-CcceEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHH----------HHHHHHhcCCCCEEE
Confidence 99 999999999986 67999999999999999 999999999999999999988 456676667899999
Q ss_pred EEEEECCEEEEEEEEecccccccCCCCCCCCCCceeeccEEEeehHHHHHHhchhhhhhhhhccccccccccccCCCceE
Q 008087 415 VKVLRDSKILNFNITLATHRRLIPSHNKGRPPSYYIIAGFVFSRCLYLISVLSMERIMNMKLRSSFWTSSCIQCHNCQMS 494 (578)
Q Consensus 415 l~V~R~g~~~~~~v~l~~~~~~~~~~~~~~~p~~~~~~Gl~~~~~p~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~v 494 (578)
|+|+|+|+.+++++++..+......... ..+.+.+..+.+. . ..+...++
T Consensus 316 l~v~R~g~~~~~~v~l~~~~~~~~~~~~----~~~gl~~~~~~~~-------~-------------------~~~~~~gv 365 (436)
T 4a8c_A 316 LGLLRNGKPLEVEVTLDTSTSSSASAEM----ITPALEGATLSDG-------Q-------------------LKDGGKGI 365 (436)
T ss_pred EEEEECCEEEEEEEEECCCCcccccccc----cccCceeeecccc-------c-------------------ccCCCCCE
Confidence 9999999999999999876532211000 0111222222111 0 00112355
Q ss_pred EEEe----ecCCcCCCCCCCEEEEeCCeecCCHHHHHHHHHhcCCCeEEEEEecCeEEEEe
Q 008087 495 SLLW----CLRSPLCLNCFNKVLAFNGNPVKNLKSLANMVENCDDEFLKFDLEYDQVVVLR 551 (578)
Q Consensus 495 vvs~----v~A~~aGl~~GD~I~~VNG~~V~~~~~l~~~l~~~~~~~v~l~v~R~~~~~l~ 551 (578)
++.. ++|+++||++||+|++|||++|.++++|.++|++.+ +.+.|++.|+++.+.-
T Consensus 366 ~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~l~~~~-~~v~l~v~R~g~~~~~ 425 (436)
T 4a8c_A 366 KIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAAKP-AIIALQIVRGNESIYL 425 (436)
T ss_pred EEEEeCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhCC-CeEEEEEEECCEEEEE
Confidence 5554 589999999999999999999999999999999854 4899999999776543
No 3
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=100.00 E-value=1e-56 Score=484.59 Aligned_cols=390 Identities=23% Similarity=0.284 Sum_probs=306.7
Q ss_pred ccccccCCCCcEEEEeeeeCCCC--------CCc----cc---------cCCCcceEEEEEEEc-C-CEEEecccccCCC
Q 008087 115 VARVVPAMDAVVKVFCVHTEPNF--------SLP----WQ---------RKRQYSSSSSGFAIG-G-RRVLTNAHSVEHY 171 (578)
Q Consensus 115 ~~~~~~~~~sVV~I~~~~~~~~~--------~~p----~~---------~~~~~~~~GsGfvI~-~-g~ILT~aHvV~~~ 171 (578)
...++++.+|||.|.+....... ..| |. ......+.||||+|+ + ||||||+|||.++
T Consensus 22 ~~~~~~~~pavv~i~~~~~~~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTn~HVv~~a 101 (451)
T 3pv2_A 22 APVLKNIMPAIVNVAVQGYLPNDVTPPGSAGNDEENQPNNRPPQSRMPEKGRKFESIGSGVIIDPNNGVIITNDHVIRNA 101 (451)
T ss_dssp HHHHHHHGGGEEEEEEEEECCC-----------------------------CEEEEEEEEEEEETTTTEEEECHHHHTTE
T ss_pred HHHHHHhCCcEEEEEEEEeecccCCCccccccchhHHhhcccccccccccCcccceeEEEEEEECCCCEEEEChHHhCCC
Confidence 55667777899999987643211 011 11 112345789999998 3 8999999999999
Q ss_pred ceEEEEEcCCCcEEEEEEEEEcCCCCEEEEEEeeCCCCCCeeeEEcCCC--CCCCCcEEEEeecCCCC----cceEEEeE
Q 008087 172 TQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWEGVLPVEFGEL--PALQDAVTVVGYPIGGD----TISVTSGV 245 (578)
Q Consensus 172 ~~i~V~~~~~g~~~~a~vv~~d~~~DlAlLkv~~~~~~~~~~~l~l~~~--~~~g~~V~~iG~p~g~~----~~sv~~G~ 245 (578)
..+.|++ .+++.++|++++.|+.+|||||+++.. .++++.|+++ ...|++|+++|||+|.. ..+++.|+
T Consensus 102 ~~i~V~~-~dg~~~~a~vv~~d~~~DlAlLkv~~~----~l~~~~l~~s~~~~~G~~V~aiG~P~G~~~~~~~~~vt~Gi 176 (451)
T 3pv2_A 102 SLITVTL-QDGRRLKARLIGGDSETDLAVLKIDAK----NLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGI 176 (451)
T ss_dssp EEEEEEC-TTSCEEECEEEEEETTTTEEEEECCCS----SCCCCCBCCGGGCCTTCEEEEEECCCCC-----CCEEEEEE
T ss_pred CEEEEEE-cCCCEEEEEEEecCcCCcEEEEEEcCc----CCceeEecCcccCCCCCEEEEEECCCCccccccCCceeEEE
Confidence 9999999 599999999999999999999999764 6788889864 36799999999999865 14899999
Q ss_pred EeceeeeeecCCceeeeEEEEecCCCCCCccceEEccCCeEEEEEecccccc-ccCCceeeecchhHHHHHHHHHHcCce
Q 008087 246 VSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHE-DVENIGYVIPTPVIMHFIQDYEKNGAY 324 (578)
Q Consensus 246 Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGPlvn~~G~vVGI~~~~~~~~-~~~~~~~aiPi~~i~~~l~~l~~~g~v 324 (578)
|++..+.... ...+..+||+|+++++|||||||||.+|+||||+++.+... +..+++||||++.+++++++|+++|++
T Consensus 177 vs~~~r~~~~-~~~~~~~iqtda~i~~GnSGGPl~n~~G~VIGI~t~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g~v 255 (451)
T 3pv2_A 177 VSALKRSDLN-IEGVENFIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIKFGSI 255 (451)
T ss_dssp EEEEC-----------CCEEESSCCCGGGTTSEEEETTCCEEEEEECCC------CCCEEEEEHHHHHHHHHHHHHHSSC
T ss_pred EeeccccccC-CCCcceEEEEecccCCCCCcCcccCCCCeEEEEEeEeecCCCCccceeeeehhHHHHHHHHHHHhcCCc
Confidence 9998765222 12234579999999999999999999999999999876543 456899999999999999999999999
Q ss_pred eccccCCcccccccChhhhhhhccccCCCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHH
Q 008087 325 TGFPLLGVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYL 403 (578)
Q Consensus 325 ~~~~~lGi~~~~~~~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~ 403 (578)
. |+|||++++.+ ++++++.+|++....|++|..|.++|||++ ||++||+|++|||++|.+|.+ +...
T Consensus 256 ~-r~~lGv~~~~~-~~~~a~~~gl~~~~~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~v~~~~~----------l~~~ 323 (451)
T 3pv2_A 256 H-RGLMGIFVQHL-TPELAQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQ----------VKTT 323 (451)
T ss_dssp C-CCBCCEEEEEC-CHHHHHHTTSCTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHH----------HHHH
T ss_pred c-cccccceEEec-cHHHHHhcCCCcCCceEEEEecCCCChHHHcCCCCCCEEEEECCEEcCCHHH----------HHHH
Confidence 8 99999999999 999999999987447999999999999999 999999999999999999987 5567
Q ss_pred HhccCCCCEEEEEEEECCEEEEEEEEecccccccCCCCCCCCCCceeeccEEEeeh-HHHHHHhchhhhhhhhhcccccc
Q 008087 404 VSQKYTGDSAAVKVLRDSKILNFNITLATHRRLIPSHNKGRPPSYYIIAGFVFSRC-LYLISVLSMERIMNMKLRSSFWT 482 (578)
Q Consensus 404 ~~~~~~g~~v~l~V~R~g~~~~~~v~l~~~~~~~~~~~~~~~p~~~~~~Gl~~~~~-p~~~~~~g~~~~~~~~~l~~~~~ 482 (578)
+.....|++++|+|+|+|+.+++++++............ ....+.|+.|.++ +...
T Consensus 324 l~~~~~g~~v~l~V~R~g~~~~~~v~l~~~~~~~~~~~~----~~~~~~G~~l~~~~~~~~------------------- 380 (451)
T 3pv2_A 324 ISLLRVGSTVKIIVERDNKPLTLSAVVTDIKSHEQKLQS----NNPFLYGLALRAFEQESP------------------- 380 (451)
T ss_dssp HHTSCTTCEEEEEEEETTEEEEEEEECBCHHHHHHHHHH----HSTTTTTEEEEEEEEECT-------------------
T ss_pred HHhcCCCCEEEEEEEECCEEEEEEEEEccCCcccccccc----ccccccccccccCChhHh-------------------
Confidence 777778999999999999999999998765421100000 0001356666654 2111
Q ss_pred ccccccCCCceEEEEee----cCCcCCCCCCCEEEEeCCeecCCHHHHHHHHHhcCCCeEEEEEecCeEEEE
Q 008087 483 SSCIQCHNCQMSSLLWC----LRSPLCLNCFNKVLAFNGNPVKNLKSLANMVENCDDEFLKFDLEYDQVVVL 550 (578)
Q Consensus 483 ~~~~~~~~~~~vvvs~v----~A~~aGl~~GD~I~~VNG~~V~~~~~l~~~l~~~~~~~v~l~v~R~~~~~l 550 (578)
......++++..+ +|+++||++||+|++|||++|.++++|.++|++ +++.+.|++.|++..++
T Consensus 381 ----~~~~~~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~~~~~~~~l~~-~~~~v~l~v~R~g~~~~ 447 (451)
T 3pv2_A 381 ----PHGNVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKSLQTIAQE-KKKELLVQVLRGPGSMY 447 (451)
T ss_dssp ----TSCEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHTTS-SCSCEEEEEEETTEEEE
T ss_pred ----cccCCCceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHhc-CCCeEEEEEEECCEEEE
Confidence 0011246666654 799999999999999999999999999999998 67889999999887654
No 4
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=100.00 E-value=1.6e-54 Score=467.12 Aligned_cols=349 Identities=23% Similarity=0.332 Sum_probs=230.8
Q ss_pred ceEEEEEEEc-C-CEEEecccccCCCceEEEEEcCCCcEEEEEEEEEcCCCCEEEEEEeeCCCCCCeeeEEcCCC--CCC
Q 008087 148 SSSSSGFAIG-G-RRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWEGVLPVEFGEL--PAL 223 (578)
Q Consensus 148 ~~~GsGfvI~-~-g~ILT~aHvV~~~~~i~V~~~~~g~~~~a~vv~~d~~~DlAlLkv~~~~~~~~~~~l~l~~~--~~~ 223 (578)
.+.||||+|+ + ||||||+|||.++..+.|++ .+++.+.|++++.|+.+|||||+++... .++++.|+++ .+.
T Consensus 85 ~~~GSG~ii~~~~g~IlTn~HVv~~a~~i~V~~-~dg~~~~a~vv~~d~~~DlAvlkv~~~~---~~~~~~l~~s~~~~~ 160 (448)
T 1ky9_A 85 MALGSGVIIDADKGYVVTNNHVVDNATVIKVQL-SDGRKFDAKMVGKDPRSDIALIQIQNPK---NLTAIKMADSDALRV 160 (448)
T ss_dssp EEEEEEEEEETTTTEEEEEHHHHTTEEEEEEEE-TTSCEEEEEEEEEETTTTEEEEEESSCC---SCCCCCBCCGGGCCT
T ss_pred ccEEEEEEEECCCCEEEEChHHhCCCCEEEEEE-CCCCEEEEEEEEEcCCCCEEEEEecCCC---CCceEEecccccCCC
Confidence 3689999997 4 89999999999999999999 5999999999999999999999998642 6788999875 467
Q ss_pred CCcEEEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCccceEEccCCeEEEEEecccccc-ccCCc
Q 008087 224 QDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHE-DVENI 302 (578)
Q Consensus 224 g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGPlvn~~G~vVGI~~~~~~~~-~~~~~ 302 (578)
|++|+++|||++... +++.|+|+++.+... ....+..+||+|+++++|||||||||.+|+||||+++.+... +..++
T Consensus 161 G~~V~aiG~P~g~~~-tvt~Givs~~~r~~~-~~~~~~~~iqtda~i~~GnSGGpl~n~~G~vvGI~~~~~~~~~~~~g~ 238 (448)
T 1ky9_A 161 GDYTVAIGNPFGLGE-TVTSGIVSALGRSGL-NAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGI 238 (448)
T ss_dssp TCEEEEEECTTSSSC-EEEEEEEEEESSCC------CCCCEEESCCCTTSCCCSEEECTTSCEEEEEECSSTTSCCCSSS
T ss_pred CCEEEEEECCCCCCC-eEEeEEEeecccccc-CCCCccCEEEEcCCCCCCCCCCeeECCCCEEEEEEEEeecCCCCccce
Confidence 999999999999765 899999999876521 112234689999999999999999999999999999876532 34689
Q ss_pred eeeecchhHHHHHHHHHHcCceeccccCCcccccccChhhhhhhccccCCCCcEEEEeCCCCcccC-CCCCCCEEEEECC
Q 008087 303 GYVIPTPVIMHFIQDYEKNGAYTGFPLLGVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESE-VLKPSDIILSFDG 381 (578)
Q Consensus 303 ~~aiPi~~i~~~l~~l~~~g~v~~~~~lGi~~~~~~~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG 381 (578)
+|+||++.+++++++|+++|++. |+|||+.++.+ ++++++.||++. ..|++|..|.++|||++ ||++||+|++|||
T Consensus 239 gfaIP~~~~~~~~~~l~~~g~v~-~~~LGv~~~~~-~~~~a~~lgl~~-~~G~~V~~V~~gspA~~AGL~~GDvI~~inG 315 (448)
T 1ky9_A 239 GFAIPSNMVKNLTSQMVEYGQVK-RGELGIMGTEL-NSELAKAMKVDA-QRGAFVSQVLPNSSAAKAGIKAGDVITSLNG 315 (448)
T ss_dssp EEEEEHHHHHHHHHHHHHHSSCC-BCCCCCSCCCT-TSHHHHTSCCTT-CCSEECCCCTTCSSSTTTTCCTTCEECBSSS
T ss_pred eeeeecccchhhHHHHhhhcccc-eeccccccccc-cHHHHHHhCCCC-CCceEEEEeccCCHHHHcCCCCCCEEEEECC
Confidence 99999999999999999999998 99999999999 899999999986 57999999999999999 9999999999999
Q ss_pred EEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEEEEEecccccccCCCCCCCCCCceeeccEEEeehHH
Q 008087 382 IDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNITLATHRRLIPSHNKGRPPSYYIIAGFVFSRCLY 461 (578)
Q Consensus 382 ~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v~l~~~~~~~~~~~~~~~p~~~~~~Gl~~~~~p~ 461 (578)
++|.+|.+ |...+.....|++++|+|+|+|+.+++++++...+..... . ...+..+.|+.+.++
T Consensus 316 ~~v~~~~~----------l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~~~--~--~~~~~~~~G~~l~~~-- 379 (448)
T 1ky9_A 316 KPISSFAA----------LRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVD--S--SSIFNGIEGAEMSNK-- 379 (448)
T ss_dssp SBCCSSHH----------HHHHTTSSBTTCCCEEEEESSSCEEECCCC--------------------------------
T ss_pred EEcCCHHH----------HHHHHHhcCCCCEEEEEEEECCEEEEEEEEEecCCCcccc--c--ccccccccceEeecc--
Confidence 99999987 4566666667999999999999998887776543211000 0 000111224433321
Q ss_pred HHHHhchhhhhhhhhccccccccccccCCCceEE----EEeecCCcCCCCCCCEEEEeCCeecCCHHHHHHHHHhcCCCe
Q 008087 462 LISVLSMERIMNMKLRSSFWTSSCIQCHNCQMSS----LLWCLRSPLCLNCFNKVLAFNGNPVKNLKSLANMVENCDDEF 537 (578)
Q Consensus 462 ~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~vv----vs~v~A~~aGl~~GD~I~~VNG~~V~~~~~l~~~l~~~~~~~ 537 (578)
. ...+++ ..+++|+++||++||+|++|||++|.++++|.++|++.++ .
T Consensus 380 -~--------------------------~~~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~~~~l~~~l~~~~~-~ 431 (448)
T 1ky9_A 380 -G--------------------------KDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPS-V 431 (448)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -C--------------------------CCCeEEEEEecCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHcCCC-e
Confidence 0 012333 3456899999999999999999999999999999998665 8
Q ss_pred EEEEEecCeEEE
Q 008087 538 LKFDLEYDQVVV 549 (578)
Q Consensus 538 v~l~v~R~~~~~ 549 (578)
+.|++.|+++.+
T Consensus 432 v~l~v~R~g~~~ 443 (448)
T 1ky9_A 432 LALNIQRGDSTI 443 (448)
T ss_dssp ------------
T ss_pred EEEEEEECCEEE
Confidence 899999987654
No 5
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=100.00 E-value=1.6e-49 Score=414.47 Aligned_cols=304 Identities=25% Similarity=0.362 Sum_probs=255.6
Q ss_pred cccccccCCCCcEEEEeeeeCCC-----------C--CCccccCCCcceEEEEEEEc-C-CEEEecccccCCCceEEEEE
Q 008087 114 GVARVVPAMDAVVKVFCVHTEPN-----------F--SLPWQRKRQYSSSSSGFAIG-G-RRVLTNAHSVEHYTQVKLKK 178 (578)
Q Consensus 114 ~~~~~~~~~~sVV~I~~~~~~~~-----------~--~~p~~~~~~~~~~GsGfvI~-~-g~ILT~aHvV~~~~~i~V~~ 178 (578)
....++++.+|||.|........ + ..||+......+.||||+|+ + ||||||+|||.++..+.|++
T Consensus 15 ~~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTnaHVv~~~~~i~V~~ 94 (345)
T 3stj_A 15 LAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQL 94 (345)
T ss_dssp SHHHHHHHGGGEEEEEEEEC------------------------CCEEEEEEEEEEETTTTEEEECHHHHTTEEEEEEEC
T ss_pred HHHHHHHhCCcEEEEEEEEeecccccCchhhhhhcccccccccCcccceeEEEEEEECCCCEEEEChHHhCCCCEEEEEe
Confidence 45667777789999988764321 0 12444444557899999997 4 89999999999999999999
Q ss_pred cCCCcEEEEEEEEEcCCCCEEEEEEeeCCCCCCeeeEEcCCC--CCCCCcEEEEeecCCCCcceEEEeEEeceeeeeecC
Q 008087 179 RGSDTKYLATVLAIGTECDIAMLTVEDDEFWEGVLPVEFGEL--PALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVH 256 (578)
Q Consensus 179 ~~~g~~~~a~vv~~d~~~DlAlLkv~~~~~~~~~~~l~l~~~--~~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~ 256 (578)
.+++.++|++++.|+.+||||||++... .++++.|+++ ...|++|+++|||++... +++.|+|++..+.....
T Consensus 95 -~dg~~~~a~vv~~d~~~DlAlLkv~~~~---~~~~~~l~~s~~~~~G~~V~aiG~p~g~~~-~vt~G~Vs~~~~~~~~~ 169 (345)
T 3stj_A 95 -NDGREFDAKLIGSDDQSDIALLQIQNPS---KLTQIAIADSDKLRVGDFAVAVGNPFGLGQ-TATSGIVSALGRSGLNL 169 (345)
T ss_dssp -TTSCEEEEEEEEEETTTTEEEEEESSCC---SCCCCCBCCGGGCCTTBEEEEEECGGGCSC-EEEEEEEEEEEECCSSS
T ss_pred -CCCcEEEEEEEEEcCCCCEEEEEEcccC---CCceEeecCcccCCCCCEEEEEECCCCCCC-cEEeeEEeeecccccCC
Confidence 5999999999999999999999997653 6788888864 467999999999999765 89999999987753222
Q ss_pred CceeeeEEEEecCCCCCCccceEEccCCeEEEEEecccccc-ccCCceeeecchhHHHHHHHHHHcCceeccccCCcccc
Q 008087 257 GSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHE-DVENIGYVIPTPVIMHFIQDYEKNGAYTGFPLLGVEWQ 335 (578)
Q Consensus 257 ~~~~~~~i~~da~i~~G~SGGPlvn~~G~vVGI~~~~~~~~-~~~~~~~aiPi~~i~~~l~~l~~~g~v~~~~~lGi~~~ 335 (578)
.....+||+|+++++|||||||||.+|+||||+++.+... +..+++|+||++.+++++++|.++|++. |+|||+.++
T Consensus 170 -~~~~~~iq~da~i~~GnSGGPLvn~~G~vVGI~s~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g~v~-~~~lGv~~~ 247 (345)
T 3stj_A 170 -EGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIK-RGLLGIKGT 247 (345)
T ss_dssp -SSSCCEEEECSCCCTTCTTCEEECTTSCEEEEEEEEECTTSSCSSCEEEEEHHHHHHHHHHHHHHSSCC-CEECCEEEE
T ss_pred -CCccCEEEEecccCCCcCccceeCCCCEEEEEEeccccCCCCcceeEEEEehHHHHHHHHHHHhccccc-ccccceeeE
Confidence 2234589999999999999999999999999999876543 4568999999999999999999999998 999999999
Q ss_pred cccChhhhhhhccccCCCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEE
Q 008087 336 KMENPDLRVAMSMKADQKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAA 414 (578)
Q Consensus 336 ~~~~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~ 414 (578)
.+ ++++++.||++. ..|++|..|.++|||++ ||++||+|++|||++|.++.+ |...+.....|++++
T Consensus 248 ~~-~~~~a~~~gl~~-~~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~~~~~----------l~~~l~~~~~g~~v~ 315 (345)
T 3stj_A 248 EM-SADIAKAFNLDV-QRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAE----------LRSRIATTEPGTKVK 315 (345)
T ss_dssp EC-CHHHHHHTTCSC-CSSEEEEEECTTSHHHHHTCCTTCEECEETTEECSCHHH----------HHHHHHTSCTTCEEE
T ss_pred ee-cHHHHHhcCCCC-CceEEEEEeccCChHHHcCCCCCCEEEEECCEECCCHHH----------HHHHHHhcCCCCEEE
Confidence 99 999999999986 67999999999999999 999999999999999999987 567777777899999
Q ss_pred EEEEECCEEEEEEEEecccccc
Q 008087 415 VKVLRDSKILNFNITLATHRRL 436 (578)
Q Consensus 415 l~V~R~g~~~~~~v~l~~~~~~ 436 (578)
|+|+|+|+.+++++++...+..
T Consensus 316 l~v~R~g~~~~~~v~l~~~~~~ 337 (345)
T 3stj_A 316 LGLLRNGKPLEVEVTLDTSTSS 337 (345)
T ss_dssp EEEEETTEEEEEEEECEEC---
T ss_pred EEEEECCEEEEEEEEEcccCCC
Confidence 9999999999999999876543
No 6
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=100.00 E-value=2.6e-46 Score=386.97 Aligned_cols=296 Identities=23% Similarity=0.339 Sum_probs=251.6
Q ss_pred ccccccCCCCcEEEEeeeeCCCCCCccccCCCcceEEEEEEEc-CCEEEecccccCCCceEEEEEcCCCcEEEEEEEEEc
Q 008087 115 VARVVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFAIG-GRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIG 193 (578)
Q Consensus 115 ~~~~~~~~~sVV~I~~~~~~~~~~~p~~~~~~~~~~GsGfvI~-~g~ILT~aHvV~~~~~i~V~~~~~g~~~~a~vv~~d 193 (578)
...+.++.+|||+|.+...... |+......+.||||+|+ +||||||+|||.+...+.|++ .+++.+.++++++|
T Consensus 12 ~~~~~~~~~sVV~I~~~~~~~~----~~~~~~~~~~gsG~iI~~~G~IlT~aHvv~~~~~i~V~~-~~g~~~~a~v~~~d 86 (318)
T 1te0_A 12 NLAVRRAAPAVVNVYNRGLNTN----SHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVAL-QDGRVFEALLVGSD 86 (318)
T ss_dssp HHHHHHHGGGEEEEEEEEECSS----SSCCEEEEEEEEEEECSTTCEEEEEHHHHTTCSEEEEEC-TTSCEEEEEEEEEE
T ss_pred HHHHHhcCCcEEEEEeEeccCC----cccccccCccEEEEEEeCCCEEEECHHHcCCCCEEEEEe-CCCCEEEEEEEEeC
Confidence 4456667779999999875432 33333456789999998 579999999999999999998 58999999999999
Q ss_pred CCCCEEEEEEeeCCCCCCeeeEEcCCC--CCCCCcEEEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEEecCCC
Q 008087 194 TECDIAMLTVEDDEFWEGVLPVEFGEL--PALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAIN 271 (578)
Q Consensus 194 ~~~DlAlLkv~~~~~~~~~~~l~l~~~--~~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~ 271 (578)
+.+|||||+++... .++++.|+++ ...|+.|+++|||++... +++.|+|+...+..+.. .....+|++|++++
T Consensus 87 ~~~DlAllk~~~~~---~~~~~~l~~~~~~~~G~~v~~~G~p~g~~~-~~~~g~vs~~~~~~~~~-~~~~~~i~~d~~~~ 161 (318)
T 1te0_A 87 SLTDLAVLIIKATG---GLPTIPINARRVPHIGDVVLAIGNPYNLGQ-TITQGIISATGRIGLNP-TGRQNFLQTDASIN 161 (318)
T ss_dssp TTTTEEEEECCCSS---CCCCCCCCTTCCCCTTCEEEEECCCSSSSC-CEEEEEEEECCCCCCCT-TCSCCSEEESSCCC
T ss_pred CCceEEEEEEeCCC---CCceEEeeCccCCCCCCEEEEEEcCCCCCC-cEEeeEEecccccccCC-CCcCCEEEECCCCC
Confidence 99999999999762 5788888863 467999999999998655 89999999876543321 12335789999999
Q ss_pred CCCccceEEccCCeEEEEEecccccc----ccCCceeeecchhHHHHHHHHHHcCceeccccCCcccccccChhhhhhhc
Q 008087 272 SGNSGGPAFNDKGKCVGIAFQSLKHE----DVENIGYVIPTPVIMHFIQDYEKNGAYTGFPLLGVEWQKMENPDLRVAMS 347 (578)
Q Consensus 272 ~G~SGGPlvn~~G~vVGI~~~~~~~~----~~~~~~~aiPi~~i~~~l~~l~~~g~v~~~~~lGi~~~~~~~~~~~~~lg 347 (578)
+|+|||||||.+|+||||+++.+... ...+++|+||++.+++++++|.++|++. ++|||+.++.+ ++.+++.||
T Consensus 162 ~G~SGGPl~~~~G~vvGI~s~~~~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~g~~~-~~~lGi~~~~~-~~~~~~~~g 239 (318)
T 1te0_A 162 HGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI-RGYIGIGGREI-APLHAQGGG 239 (318)
T ss_dssp TTTTTSEEECTTCCEEEEEECCSSSSSSCCSCCSCEEEEEHHHHHHHHHHHHHHSSCC-CEECCEEEEEC-SCCCSSSSC
T ss_pred CCCCcCceECCCCeEEEEEeeeeccCCccccccceEEeccHHHHHHHHHHHHHcCCcc-cccceeEeeec-chhHHHhcc
Confidence 99999999999999999999866432 3568899999999999999999999998 99999999998 788889999
Q ss_pred cccCCCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEE
Q 008087 348 MKADQKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNF 426 (578)
Q Consensus 348 l~~~~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~ 426 (578)
++. ..|++|..|.++|||++ ||++||+|++|||++|.++.+ |..++.....|+++.|+|+|+|+.+++
T Consensus 240 ~~~-~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~----------l~~~l~~~~~g~~v~l~v~R~g~~~~~ 308 (318)
T 1te0_A 240 IDQ-LQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALE----------TMDQVAEIRPGSVIPVVVMRDDKQLTL 308 (318)
T ss_dssp SSS-CCCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCCHHH----------HHHHHHTSCTTCEEEEEEESSSCEEEE
T ss_pred CCC-CCcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcCCHHH----------HHHHHHhcCCCCEEEEEEEECCEEEEE
Confidence 876 57999999999999999 999999999999999999877 556777667899999999999999999
Q ss_pred EEEeccc
Q 008087 427 NITLATH 433 (578)
Q Consensus 427 ~v~l~~~ 433 (578)
++++...
T Consensus 309 ~v~~~~~ 315 (318)
T 1te0_A 309 QVTIQEY 315 (318)
T ss_dssp EEECEEC
T ss_pred EEEEccC
Confidence 9988654
No 7
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=100.00 E-value=6.8e-45 Score=380.78 Aligned_cols=299 Identities=24% Similarity=0.368 Sum_probs=247.3
Q ss_pred cccccccCCCCcEEEEeeeeCCCCCCccccCCCcceEEEEEEEc-CCEEEecccccCCCceEEEEEcCCCcEEEEEEEEE
Q 008087 114 GVARVVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFAIG-GRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAI 192 (578)
Q Consensus 114 ~~~~~~~~~~sVV~I~~~~~~~~~~~p~~~~~~~~~~GsGfvI~-~g~ILT~aHvV~~~~~i~V~~~~~g~~~~a~vv~~ 192 (578)
..+.++++.+|||.|.......++...+ ......+.||||+|+ +||||||+|||.+...+.|++ .+++.+.+++++.
T Consensus 19 ~~~~~~~~~~sVV~I~~~~~~~~~~~~~-~~~~~~g~GSG~iI~~~G~IlT~aHvv~~~~~i~V~~-~~g~~~~a~~v~~ 96 (348)
T 3qo6_A 19 TVRLFQENTPSVVYITNLAVRQDAFTLD-VLEVPQGSGSGFVWDKQGHIVTNYHVIRGASDLRVTL-ADQTTFDAKVVGF 96 (348)
T ss_dssp HHHHHHHHGGGEEEEEEEEEEECSSSCC-EEEEEEEEEEEEEEETTTEEEECHHHHTTCSEEEEEC-TTSCEEEEEEEEE
T ss_pred HHHHHHHhCCCEEEEEEEeecccccccc-cccccCceEEEEEEeCCCEEEECHHHhCCCcEEEEEE-CCCCEEEEEEEEE
Confidence 4556777888999999876543321111 111235689999998 679999999999999999998 5899999999999
Q ss_pred cCCCCEEEEEEeeCCCCCCeeeEEcCCCC--CCCCcEEEEeecCCCCcceEEEeEEeceeeeeec--CCceeeeEEEEec
Q 008087 193 GTECDIAMLTVEDDEFWEGVLPVEFGELP--ALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYV--HGSTELLGLQIDA 268 (578)
Q Consensus 193 d~~~DlAlLkv~~~~~~~~~~~l~l~~~~--~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~--~~~~~~~~i~~da 268 (578)
|+.+|||||+++.+. ..++++.|+++. ..|+.|+++|||.+... +++.|+|+.+.+.... .+.....++++|+
T Consensus 97 d~~~DlAlLkl~~~~--~~~~~i~l~~s~~~~~G~~v~~iG~p~g~~~-~~~~g~vs~~~~~~~~~~~~~~~~~~i~~da 173 (348)
T 3qo6_A 97 DQDKDVAVLRIDAPK--NKLRPIPVGVSADLLVGQKVFAIGNPFGLDH-TLTTGVISGLRREISSAATGRPIQDVIQTDA 173 (348)
T ss_dssp EGGGTEEEEECCCCG--GGCCCCCBCCSTTCCTTCEEEEEECGGGCTT-EEEEEEEEEEEEEECCSSSSSCEEEEEEECS
T ss_pred cCcCCEEEEEEcCCC--CCceeEEecCcccCCCCCEEEEEECCCCCCC-cEeEEEEEeeccccccccCCCcccCEEEEeC
Confidence 999999999998752 257888887643 56999999999998766 8999999988765332 1223346799999
Q ss_pred CCCCCCccceEEccCCeEEEEEecccccc-ccCCceeeecchhHHHHHHHHHHcCceeccccCCcccccccChhhhhhhc
Q 008087 269 AINSGNSGGPAFNDKGKCVGIAFQSLKHE-DVENIGYVIPTPVIMHFIQDYEKNGAYTGFPLLGVEWQKMENPDLRVAMS 347 (578)
Q Consensus 269 ~i~~G~SGGPlvn~~G~vVGI~~~~~~~~-~~~~~~~aiPi~~i~~~l~~l~~~g~v~~~~~lGi~~~~~~~~~~~~~lg 347 (578)
++|+|||||||||.+|+||||+++.+... ...+++|+||++.+++++++|+++|++. |||||+++... ...+.++
T Consensus 174 ~i~~G~SGGPLvn~~G~vvGI~s~~~~~~~~~~g~gfaiP~~~~~~~~~~l~~~g~~~-~~~lGi~~~~~---~~~~~~~ 249 (348)
T 3qo6_A 174 AINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGKVT-RPILGIKFAPD---QSVEQLG 249 (348)
T ss_dssp CCCTTCTTCEEECTTSCEEEEEEEEECSSSSCSSCEEEEEHHHHHHHHHHHHHHSSCC-CEECCCEECCT---TTTTTTT
T ss_pred CcCCCCcHHHhhCCCCeEEEEEEeeecCCCCcccEEEEEEecchHHHHHHHHhCCcee-eeecCcEEccc---hhhhhcC
Confidence 99999999999999999999999876543 3578999999999999999999999998 99999998743 3345555
Q ss_pred cccCCCCcEEEEeCCCCcccC-CCCC-----------CCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEE
Q 008087 348 MKADQKGVRIRRVDPTAPESE-VLKP-----------SDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAV 415 (578)
Q Consensus 348 l~~~~~Gv~V~~V~p~spA~~-GL~~-----------GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l 415 (578)
+ .|++|..|.++|||++ ||++ ||+|++|||++|.+|.+ |...+.....|++++|
T Consensus 250 ~----~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~~d----------l~~~l~~~~~g~~v~l 315 (348)
T 3qo6_A 250 V----SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSD----------LYRILDQCKVGDEVTV 315 (348)
T ss_dssp C----SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSSSHH----------HHHHHTTCCTTCEEEE
T ss_pred C----ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeCCHHH----------HHHHHHhCCCcCEEEE
Confidence 4 5999999999999999 9999 99999999999999988 5577777778999999
Q ss_pred EEEECCEEEEEEEEeccccc
Q 008087 416 KVLRDSKILNFNITLATHRR 435 (578)
Q Consensus 416 ~V~R~g~~~~~~v~l~~~~~ 435 (578)
+|+|+|+.+++++++..++.
T Consensus 316 ~v~R~g~~~~~~v~l~~~~~ 335 (348)
T 3qo6_A 316 EVLRGDHKEKISVTLEPKPD 335 (348)
T ss_dssp EEECSSSEEEEEEECEECC-
T ss_pred EEEECCEEEEEEEEEccCCC
Confidence 99999999999999876643
No 8
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=100.00 E-value=3.2e-43 Score=364.87 Aligned_cols=280 Identities=23% Similarity=0.304 Sum_probs=232.6
Q ss_pred ccccccCCCCcEEEEeeeeCCCCCCccccCCCcceEEEEEEEcC-CEEEecccccCCCc---------eEEEEEcCCCcE
Q 008087 115 VARVVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFAIGG-RRVLTNAHSVEHYT---------QVKLKKRGSDTK 184 (578)
Q Consensus 115 ~~~~~~~~~sVV~I~~~~~~~~~~~p~~~~~~~~~~GsGfvI~~-g~ILT~aHvV~~~~---------~i~V~~~~~g~~ 184 (578)
.+.+.++.+|||+|..... ...+.||||+|++ ||||||+|||.+.. .+.|++ .+++.
T Consensus 9 ~~~~~~~~~svV~I~~~~~------------~~~~~gsG~iI~~~g~ILT~aHvv~~~~~~~~~~~~~~i~V~~-~~g~~ 75 (324)
T 1y8t_A 9 EQVAAKVVPSVVMLETDLG------------RQSEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTF-SDGRT 75 (324)
T ss_dssp HHHHHHHGGGEEEEEEEC----------------CEEEEEECCTTSEEEEEHHHHTTCC--------CEEEEEE-TTCCE
T ss_pred HHHHHHhcCcEEEEEEEcc------------CCCceEEEEEEeCCCEEEEChHHcCCcccccccCCceEEEEEe-CCCCE
Confidence 4456667779999987542 2346899999984 89999999998765 789999 58999
Q ss_pred EEEEEEEEcCCCCEEEEEEeeCCCCCCeeeEEcCCC--CCCCCcEEEEeecCCCCcceEEEeEEeceeeeeecCC-----
Q 008087 185 YLATVLAIGTECDIAMLTVEDDEFWEGVLPVEFGEL--PALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHG----- 257 (578)
Q Consensus 185 ~~a~vv~~d~~~DlAlLkv~~~~~~~~~~~l~l~~~--~~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~----- 257 (578)
+.++++++|+.+|||||+++.+. .++++.|+++ ...|+.|+++|||.+... +++.|+|+...+......
T Consensus 76 ~~a~vv~~d~~~DlAllkl~~~~---~~~~~~l~~~~~~~~G~~v~~~G~p~g~~~-~~~~G~vs~~~~~~~~~~~~g~~ 151 (324)
T 1y8t_A 76 APFTVVGADPTSDIAVVRVQGVS---GLTPISLGSSSDLRVGQPVLAIGSPLGLEG-TVTTGIVSALNRPVSTTGEAGNQ 151 (324)
T ss_dssp ECEEEEECCTTTTEEEEEECSCC---SCCCCEECCSTTCCTTCEEEEEECGGGCTT-EEEEEEEEEEEEEECC-------
T ss_pred EEEEEEEeCCCCCEEEEEECCCC---CCceEEecCcccCCCCCEEEEEEcCCCCCC-cEeeeEEeecccccccccccCcc
Confidence 99999999999999999999753 6889999864 357999999999998655 889999998766432111
Q ss_pred ceeeeEEEEecCCCCCCccceEEccCCeEEEEEecccccc--------ccCCceeeecchhHHHHHHHHHHcCceecccc
Q 008087 258 STELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHE--------DVENIGYVIPTPVIMHFIQDYEKNGAYTGFPL 329 (578)
Q Consensus 258 ~~~~~~i~~da~i~~G~SGGPlvn~~G~vVGI~~~~~~~~--------~~~~~~~aiPi~~i~~~l~~l~~~g~v~~~~~ 329 (578)
.....+||+++.+|+|+|||||||.+|+||||+++.+... +..+++||||++.+++++++|+++|++. ++|
T Consensus 152 ~~~~~~i~~d~~~~~G~SGGPlv~~~G~vvGI~s~~~~~~~~~~~~~~~~~g~~~aIP~~~v~~~l~~l~~~g~~~-~~~ 230 (324)
T 1y8t_A 152 NTVLDAIQTDAAINPGNSGGALVNMNAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELISTGKAS-HAS 230 (324)
T ss_dssp CCCEEEEEECSCCCTTCTTEEEECTTSEEEEEEEEECCC-------CCCCSSCEEEEEHHHHHHHHHHHHHHSCCC-CEE
T ss_pred cccCCEEEEcCCCCCCCccCcEECCCCeEEEEEeeecccCcccccccccccceEEecCHHHHHHHHHHHHHcCCcc-ccc
Confidence 1234689999999999999999999999999999865431 2357899999999999999999999988 899
Q ss_pred CCcccccccChhhhhhhccccCCCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccC
Q 008087 330 LGVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKY 408 (578)
Q Consensus 330 lGi~~~~~~~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~ 408 (578)
||+.+.... ...|++|..|.++|||++ |||+||+|++|||++|.+|.+ |...+....
T Consensus 231 lGi~~~~~~------------~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~----------l~~~l~~~~ 288 (324)
T 1y8t_A 231 LGVQVTNDK------------DTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADA----------LVAAVRSKA 288 (324)
T ss_dssp CCEEEESCS------------SSSSEEEEEECTTSTTTTTTCCTTCEEEEETTEECCSHHH----------HHHHHHTSC
T ss_pred cceEeeecc------------CCCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCHHH----------HHHHHHhcC
Confidence 999987541 246899999999999999 999999999999999999987 556676666
Q ss_pred CCCEEEEEEEE-CCEEEEEEEEecccc
Q 008087 409 TGDSAAVKVLR-DSKILNFNITLATHR 434 (578)
Q Consensus 409 ~g~~v~l~V~R-~g~~~~~~v~l~~~~ 434 (578)
.|++++|+|+| +|+.+++++++...+
T Consensus 289 ~g~~v~l~v~R~~g~~~~~~v~~~~~~ 315 (324)
T 1y8t_A 289 PGATVALTFQDPSGGSRTVQVTLGKAE 315 (324)
T ss_dssp TTCEEEEEEECSSCCEEEEEEECEEC-
T ss_pred CCCEEEEEEEECCCCEEEEEEEEccCC
Confidence 89999999999 999999999887653
No 9
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=100.00 E-value=6.9e-44 Score=369.75 Aligned_cols=289 Identities=26% Similarity=0.374 Sum_probs=233.0
Q ss_pred cccccccCCCCcEEEEeeeeCCCCCCccccCCCcceEEEEEEEc-CCEEEecccccCCCceEEEEEcCCCcEEEEEEEEE
Q 008087 114 GVARVVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFAIG-GRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAI 192 (578)
Q Consensus 114 ~~~~~~~~~~sVV~I~~~~~~~~~~~p~~~~~~~~~~GsGfvI~-~g~ILT~aHvV~~~~~i~V~~~~~g~~~~a~vv~~ 192 (578)
..+.++++.+|||+|..... .||.......+.||||+|+ +||||||+|||.+...+.|++ .+++.++++++++
T Consensus 17 ~~~~~~~~~~sVV~I~~~~~-----~~~~~~~~~~~~gsG~iI~~~G~IlT~aHvv~~~~~i~V~~-~~g~~~~a~v~~~ 90 (325)
T 1lcy_A 17 IADVVEKTAPAVVYIEILDR-----HPFLGREVPISNGSGFVVAADGLIVTNAHVVADRRRVRVRL-LSGDTYEAVVTAV 90 (325)
T ss_dssp HHHHHHHHGGGEEEEEEEEE-----ETTTTEEEEEEEEEEEEEETTTEEEECHHHHTTCSEEEEEC-TTSCEEEEEEEEE
T ss_pred HHHHHHHhCCcEEEEEEEec-----CccCCCccccccEEEEEEeCCCEEEECHHHcCCCCEEEEEe-CCCCEEEEEEEEE
Confidence 35566777789999987653 2354333345789999998 579999999999999999998 5899999999999
Q ss_pred cCCCCEEEEEEeeCCCCCCeeeEEcCCC--CCCCCcEEEEeecCCCCcceEEEeEEeceeeeeecCC--ceeeeEEEEec
Q 008087 193 GTECDIAMLTVEDDEFWEGVLPVEFGEL--PALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHG--STELLGLQIDA 268 (578)
Q Consensus 193 d~~~DlAlLkv~~~~~~~~~~~l~l~~~--~~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~--~~~~~~i~~da 268 (578)
|+.+|||||+++... .++++.|+++ ...|++|+++|||.+... +++.|+|+...+.....+ .....+||+|+
T Consensus 91 d~~~DlAllkl~~~~---~~~~~~l~~~~~~~~G~~v~~~G~p~~~~~-~v~~G~vs~~~~~~~~~g~~~~~~~~i~~d~ 166 (325)
T 1lcy_A 91 DPVADIATLRIQTKE---PLPTLPLGRSADVRQGEFVVAMGSPFALQN-TITSGIVSSAQRPARDLGLPQTNVEYIQTDA 166 (325)
T ss_dssp ETTTTEEEEECCCSS---CCCCCCBCCGGGCCTTCEEEECCCTTSSSS-CCEEEEBCSCSCC---------CCCCEEESS
T ss_pred CCCCCEEEEEEcCCC---CCceEEecccccCCCCCEEEEEECCCCCCC-cEEeEEEecccccccccCCCCCCCCEEEEcC
Confidence 999999999999763 5788889864 467999999999998665 899999998876421111 12335799999
Q ss_pred CCCCCCccceEEccCCeEEEEEeccccccccCCceeeecchhHHHHHHHHHHc------CceeccccCCcccccccChhh
Q 008087 269 AINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEKN------GAYTGFPLLGVEWQKMENPDL 342 (578)
Q Consensus 269 ~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~~------g~v~~~~~lGi~~~~~~~~~~ 342 (578)
++++|+|||||||.+|+||||+++.. ..+++|+||++.++++|+++++. +.+. ++|||+.+..+ ++++
T Consensus 167 ~~~~G~SGGPl~~~~G~vVGI~s~~~----~~g~~~aip~~~i~~~l~~~~~~~~~~g~~~~~-r~~lGv~~~~l-~~~~ 240 (325)
T 1lcy_A 167 AIDFGNAGGPLVNLDGEVIGVNTMKV----TAGISFAIPSDRLREFLHRGEKKNSSSGISGSQ-RRYIGVMMLTL-SPSI 240 (325)
T ss_dssp CCSTTTTTSEEEETTSCEEEEEEEEE----ETTEEEEEEHHHHHHHTCC----------------EECCEEEEEC-CHHH
T ss_pred CCCCCCccccEECCCCEEEEEEeEee----cCCeeEEEEHHHHHHHHHHhhhccccccccccc-ccccceEeecC-CHHH
Confidence 99999999999999999999999854 25789999999999999998764 3566 89999999999 8899
Q ss_pred hhhhcccc-----CCCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEE
Q 008087 343 RVAMSMKA-----DQKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVK 416 (578)
Q Consensus 343 ~~~lgl~~-----~~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~ 416 (578)
++.+++.. ...|++|..|.++|||++ ||++||+|++|||++|.++.+ |...+.. ++++.|+
T Consensus 241 ~~~~~l~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~~~~----------l~~~l~~---~~~v~l~ 307 (325)
T 1lcy_A 241 LAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAED----------VYEAVRT---QSQLAVQ 307 (325)
T ss_dssp HHHHTTSCTTSCCCSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHH----------HHHHHTT---CSSEEEE
T ss_pred HHhhCccccccccCCCCeEEEEeCcCChHHHCCCCCCCEEEEECCEEcCCHHH----------HHHHHhC---CCeEEEE
Confidence 99998853 246999999999999999 999999999999999999877 4455543 6889999
Q ss_pred EEECCEEEEEEEEec
Q 008087 417 VLRDSKILNFNITLA 431 (578)
Q Consensus 417 V~R~g~~~~~~v~l~ 431 (578)
|+|+|+.+++.+++.
T Consensus 308 v~R~g~~~~~~v~~~ 322 (325)
T 1lcy_A 308 IRRGRETLTLYVTPE 322 (325)
T ss_dssp EEETTEEEEEEECCE
T ss_pred EEECCEEEEEEEEEe
Confidence 999999998887654
No 10
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=100.00 E-value=3.3e-43 Score=365.95 Aligned_cols=291 Identities=22% Similarity=0.340 Sum_probs=151.6
Q ss_pred cccccccCCCCcEEEEeeeeCCCCCCccccCCCcceEEEEEEEc-CCEEEecccccCCCceEEEEEcCCCcEEEEEEEEE
Q 008087 114 GVARVVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFAIG-GRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAI 192 (578)
Q Consensus 114 ~~~~~~~~~~sVV~I~~~~~~~~~~~p~~~~~~~~~~GsGfvI~-~g~ILT~aHvV~~~~~i~V~~~~~g~~~~a~vv~~ 192 (578)
..+.++++.+|||+|.+.... +|.......+.||||+|+ +||||||||||.+...+.|.+ .+++.+.+++++.
T Consensus 16 ~~~~~~~~~~sVV~I~~~~~~-----~~~~~~~~~~~GSG~iI~~~G~ILTaaHvv~~~~~i~V~~-~~g~~~~a~~~~~ 89 (332)
T 3num_A 16 IADVVEKIAPAVVHIELFRKL-----PFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVEL-KNGATYEAKIKDV 89 (332)
T ss_dssp HHHHHHHHGGGEEEEEEEEEC-----TTSSCEEEEEEEEEEEEETTTEEEECTTTCCTTSEEEEEE-TTSCEEEEEEEEE
T ss_pred HHHHHHHhcCcEEEEEEEecc-----ccCCCcceeeeEEEEEEeCCCEEEEChHHcCCCCEEEEEE-CCCCEEEEEEEEe
Confidence 455677778899999987643 455555566899999998 579999999999999999999 5899999999999
Q ss_pred cCCCCEEEEEEeeCCCCCCeeeEEcCCC--CCCCCcEEEEeecCCCCcceEEEeEEeceeeeeecC--CceeeeEEEEec
Q 008087 193 GTECDIAMLTVEDDEFWEGVLPVEFGEL--PALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVH--GSTELLGLQIDA 268 (578)
Q Consensus 193 d~~~DlAlLkv~~~~~~~~~~~l~l~~~--~~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~--~~~~~~~i~~da 268 (578)
|+.+|||||+++.+. .++++.|+++ ...|+.|+++|||.+... +++.|+|+...+..... ......++++++
T Consensus 90 d~~~DlAlL~l~~~~---~~~~~~l~~~~~~~~G~~v~~~G~p~g~~~-~~~~g~vs~~~~~~~~~~~~~~~~~~i~~d~ 165 (332)
T 3num_A 90 DEKADIALIKIDHQG---KLPVLLLGRSSELRPGEFVVAIGSPFSLQN-TVTTGIVSTTQRGGKELGLRNSDMDYIQTDA 165 (332)
T ss_dssp ETTTTEEEEEECCSS---CCCCCCBCCTTSCCTTCEEEEECC-----C-CEEEEEEEEC--------------CCEEESS
T ss_pred cCCCCeEEEEEcCCC---CCceeeecCcccCCCCCEEEEEECCCCCCc-ceeeeEEEeecccccccCcCCCcCCEEEEEC
Confidence 999999999999763 5778888764 356999999999998665 88999999876532211 112235789999
Q ss_pred CCCCCCccceEEccCCeEEEEEeccccccccCCceeeecchhHHHHHHHHHH---c--CceeccccCCcccccccChhhh
Q 008087 269 AINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEK---N--GAYTGFPLLGVEWQKMENPDLR 343 (578)
Q Consensus 269 ~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~---~--g~v~~~~~lGi~~~~~~~~~~~ 343 (578)
++++|+|||||||.+|+||||++..+ ..+++|+||++.++++|+++.+ . +.+. ++|||+.+..+ +...+
T Consensus 166 ~i~~G~SGGPlv~~~G~vvGI~s~~~----~~g~~~aip~~~i~~~l~~~~~~~~~g~~~~~-r~~lGi~~~~~-~~~~~ 239 (332)
T 3num_A 166 IINYGNAGGPLVNLDGEVIGINTLKV----TAGISFAIPSDKIKKFLTESHDRQAKGKAITK-KKYIGIRMMSL-TSSKA 239 (332)
T ss_dssp CCCTTTTTSEEEETTSCEEEEEEEEE----ETTEEEEEEHHHHHHHHHHHCC----------------------------
T ss_pred CcCCCCcHHHhhCCCCcEEEEEeeEe----cccceEEECHHHHHHHHHHHhhhhccCccccc-ccccceEEEec-CHHHh
Confidence 99999999999999999999998854 2679999999999999999853 2 2345 89999999988 66665
Q ss_pred hhhc-----cccCCCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEE
Q 008087 344 VAMS-----MKADQKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKV 417 (578)
Q Consensus 344 ~~lg-----l~~~~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V 417 (578)
+.++ ++....|++|..|.++|||++ ||++||+|++|||++|.++.++ ...+. .|++++|+|
T Consensus 240 ~~~~~~~~~~~~~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~----------~~~l~---~~~~v~l~v 306 (332)
T 3num_A 240 KELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDV----------SDVIK---RESTLNMVV 306 (332)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhhccccCCCCCceEEEEeccCCChHHcCCCCCCEEEEECCEECCCHHHH----------HHHHh---CCCeEEEEE
Confidence 5543 334457999999999999999 9999999999999999999884 23443 378899999
Q ss_pred EECCEEEEEEEEeccc
Q 008087 418 LRDSKILNFNITLATH 433 (578)
Q Consensus 418 ~R~g~~~~~~v~l~~~ 433 (578)
+|+|+.+++++++..+
T Consensus 307 ~R~g~~~~~~v~p~~~ 322 (332)
T 3num_A 307 RRGNEDIMITVIPEEI 322 (332)
T ss_dssp ----------------
T ss_pred EECCEEEEEEEEEeee
Confidence 9999999888887654
No 11
>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1
Probab=100.00 E-value=2.2e-33 Score=278.00 Aligned_cols=214 Identities=28% Similarity=0.347 Sum_probs=161.3
Q ss_pred cccccccCCCCcEEEEeeeeCCCCC-----Cccc----c-----CCCc-ceEEEEEEEc-CCEEEecccccCCCceEEEE
Q 008087 114 GVARVVPAMDAVVKVFCVHTEPNFS-----LPWQ----R-----KRQY-SSSSSGFAIG-GRRVLTNAHSVEHYTQVKLK 177 (578)
Q Consensus 114 ~~~~~~~~~~sVV~I~~~~~~~~~~-----~p~~----~-----~~~~-~~~GsGfvI~-~g~ILT~aHvV~~~~~i~V~ 177 (578)
....++++.+|||+|.+........ .||. . .... .+.||||+|+ +||||||+|||.+...+.|+
T Consensus 6 ~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsG~iI~~~g~ILTnaHvv~~~~~i~V~ 85 (239)
T 1l1j_A 6 IVNVVEACAPAVVKIDVVKTVKTSFFDPYFEQFFKKWFGELPPGFERQVASLGSGFIFDPEGYILTNYHVVGGADNITVT 85 (239)
T ss_dssp HHHHHHHHGGGEEEEEEECC--CCCCCHHHHHHHHHHCTTSCTTHHHHEEEEEEEEEEETTTEEEEEHHHHSSCSSCEEE
T ss_pred HHHHHHHhCCCEEEEEEEEeecccccccccchhhhhhccccccccccccCceEEEEEEeCCCEEEEChHHhCCCCEEEEE
Confidence 3456667778999999876432110 1221 0 1122 5789999998 58999999999999999999
Q ss_pred EcCCCcEEEEEEEEEcCCCCEEEEEEeeCCCCCCeeeEEcCCC--CCCCCcEEEEeecCCCCcceEEEeEEeceeeeeec
Q 008087 178 KRGSDTKYLATVLAIGTECDIAMLTVEDDEFWEGVLPVEFGEL--PALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYV 255 (578)
Q Consensus 178 ~~~~g~~~~a~vv~~d~~~DlAlLkv~~~~~~~~~~~l~l~~~--~~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~ 255 (578)
+ .+++.++++++++|+.+||||||++.+. ..++++.|+++ ...|++|+++|||.+... +++.|+|++..+....
T Consensus 86 ~-~~g~~~~a~vv~~d~~~DlAllkl~~~~--~~~~~~~l~~s~~~~~G~~v~~iG~p~g~~~-~vt~Givs~~~r~~~~ 161 (239)
T 1l1j_A 86 M-LDGSKYDAEYIGGDEELDIAVIKIKASD--KKFPYLEFGDSDKVKIGEWAIAIGNPLGFQH-TVTVGVVSATNRRIPK 161 (239)
T ss_dssp C-TTSCEEEBCCCEEETTTTEEEEEBCCSS--SCCCCCEECCGGGCCTTCEEEEEECTTSSSC-EEEEEEEEEEEEEEEC
T ss_pred E-CCCCEEEEEEEEEcCCCCEEEEEEcCCC--CCCceEEecCccCCccccEEEEEECCCCCCC-cEEEEEEecccccccc
Confidence 8 5899999999999999999999999752 26889999874 367999999999998665 8999999998765321
Q ss_pred CC--ceeeeEEEEecCCCCCCccceEEccCCeEEEEEeccccccccCCceeeecchhHHHHHHHHHHcCceeccccCCc
Q 008087 256 HG--STELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEKNGAYTGFPLLGV 332 (578)
Q Consensus 256 ~~--~~~~~~i~~da~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~~g~v~~~~~lGi 332 (578)
.. .....+||+|+++|+|||||||+|.+|+||||+++.+...+..+++||||++.+++++++|+++|++. |||||+
T Consensus 162 ~~~~~~~~~~i~tda~i~~G~SGGPLv~~~G~vvGI~s~~~~~~~~~g~~faIP~~~~~~~~~~l~~~g~v~-r~~lGv 239 (239)
T 1l1j_A 162 PDGSGYYVGLIQTDAAINPGNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTILTQKKVE-KAYLGV 239 (239)
T ss_dssp TTSSCEEEEEEEESSCCCTTTTTSEEECSSSEEEEEECCCSCCCSCCSCEEEEEHHHHHHHHGGGCC------------
T ss_pred CCCccccCCEEEECCCCCCCCccHHhccCCCeEEEEEeeeecCCCcCceEEEEEHHHHHHHHHHHHHCCCCc-cceeCc
Confidence 11 12346899999999999999999999999999998765223468999999999999999999999998 999996
No 12
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=100.00 E-value=2.8e-33 Score=277.85 Aligned_cols=209 Identities=25% Similarity=0.320 Sum_probs=152.9
Q ss_pred cccccccCCCCcEEEEeeeeCCC-------------CCCccccCCCcceEEEEEEEc-C-CEEEecccccCCCceEEEEE
Q 008087 114 GVARVVPAMDAVVKVFCVHTEPN-------------FSLPWQRKRQYSSSSSGFAIG-G-RRVLTNAHSVEHYTQVKLKK 178 (578)
Q Consensus 114 ~~~~~~~~~~sVV~I~~~~~~~~-------------~~~p~~~~~~~~~~GsGfvI~-~-g~ILT~aHvV~~~~~i~V~~ 178 (578)
....++++.+|||.|........ ...||+......+.||||+|+ + ||||||+|||.++..+.|.+
T Consensus 15 ~~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTnaHvv~~a~~i~V~~ 94 (245)
T 3sti_A 15 LAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQL 94 (245)
T ss_dssp SHHHHHHHGGGEEEC----------------------------------CCEEEEEETTTTEEEECGGGC----CEEEEC
T ss_pred HHHHHHHhCCceEEEEEEEeeccccccchhhhhhccccccccccccccceEEEEEEeCCCCEEEEcHHHhCCCCEEEEEE
Confidence 45667777789999988654321 012443334456789999998 4 89999999999999999999
Q ss_pred cCCCcEEEEEEEEEcCCCCEEEEEEeeCCCCCCeeeEEcCCC--CCCCCcEEEEeecCCCCcceEEEeEEeceeeeeecC
Q 008087 179 RGSDTKYLATVLAIGTECDIAMLTVEDDEFWEGVLPVEFGEL--PALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVH 256 (578)
Q Consensus 179 ~~~g~~~~a~vv~~d~~~DlAlLkv~~~~~~~~~~~l~l~~~--~~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~ 256 (578)
.+++.+.+++++.|+.+||||||++... .++++.|+++ ...|++|+++|||++... +++.|+|+...+.....
T Consensus 95 -~dg~~~~a~vv~~d~~~DlAlLkv~~~~---~~~~~~l~~s~~~~~G~~v~aiG~P~g~~~-~vt~G~vs~~~~~~~~~ 169 (245)
T 3sti_A 95 -NDGREFDAKLIGSDDQSDIALLQIQNPS---KLTQIAIADSDKLRVGDFAVAVGNPFGLGQ-TATSGIVSALGRSGLNL 169 (245)
T ss_dssp -TTSCEEEEEEEEEETTTTEEEEEESSCC---SCCCCCBCCGGGCCTTBEEEEEECGGGSCC-EEEEEEEEECSSCSSCC
T ss_pred -CCCCEEEEEEEEecCCCCEEEEEeccCC---CCceeeecCcCCCCCCCEEEEEECCCCCCC-cEEeeEEeeecccccCC
Confidence 5899999999999999999999997653 6788888864 467999999999999766 89999999987652221
Q ss_pred CceeeeEEEEecCCCCCCccceEEccCCeEEEEEecccccc-ccCCceeeecchhHHHHHHHHHHcCceecccc
Q 008087 257 GSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHE-DVENIGYVIPTPVIMHFIQDYEKNGAYTGFPL 329 (578)
Q Consensus 257 ~~~~~~~i~~da~i~~G~SGGPlvn~~G~vVGI~~~~~~~~-~~~~~~~aiPi~~i~~~l~~l~~~g~v~~~~~ 329 (578)
.....+||+|+++++|||||||||.+|+||||+++.+... +..+++||||++.+++++++|+++|++. ++|
T Consensus 170 -~~~~~~i~tda~i~~G~SGGPLvn~~G~vVGI~s~~~~~~~~~~g~~faIP~~~~~~~~~~l~~~g~~~-~~~ 241 (245)
T 3sti_A 170 -EGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIL-EHH 241 (245)
T ss_dssp -TTCSSCEEESSCCCTTTTTSEEECTTSCEEEEEECCC------CCCEEEEEHHHHHHHHHHHHHHHHHC----
T ss_pred -CCccCEEEEcCCcCCCcchhHeecCCCeEEEEEEeEECCCCCcceEEEEEeHHHHHHHHHHHHHcCCCC-Ccc
Confidence 2233579999999999999999999999999999876533 4568999999999999999999998876 554
No 13
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=99.97 E-value=3.3e-31 Score=262.45 Aligned_cols=205 Identities=23% Similarity=0.336 Sum_probs=167.1
Q ss_pred ccccccCCCCcEEEEeeeeCCCCCCccccCCCcceEEEEEEEc-CCEEEecccccCCCceEEEEEcCCCcEEEEEEEEEc
Q 008087 115 VARVVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFAIG-GRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIG 193 (578)
Q Consensus 115 ~~~~~~~~~sVV~I~~~~~~~~~~~p~~~~~~~~~~GsGfvI~-~g~ILT~aHvV~~~~~i~V~~~~~g~~~~a~vv~~d 193 (578)
.+.++++.+|||+|........ |.......+.||||+|+ +||||||+|||.+...+.|.+ .+++.+.+++++.|
T Consensus 23 ~~~~~~~~~sVV~I~~~~~~~~----~~~~~~~~~~GsG~ii~~~G~IlTaaHvv~~~~~~~V~~-~~g~~~~a~vv~~d 97 (237)
T 3lgi_A 23 NLAVRRAAPAVVNVYNRGLNTN----SHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVAL-QDGRVFEALLVGSD 97 (237)
T ss_dssp HHHHHHHGGGEEEEEEECCTTT----CTTSCCEEEEEEEEEEETTTEEEEEHHHHTTCSEEEEEC-TTSCEEEEEEEEEE
T ss_pred HHHHHHhCCcEEEEEEEecccC----cccccccceEEEEEEEeCCCEEEEeeeecCCCCEEEEEe-CCCCEEEEEEEEEc
Confidence 4456667779999998775443 33344556789999998 579999999999999999998 58999999999999
Q ss_pred CCCCEEEEEEeeCCCCCCeeeEEcCCC--CCCCCcEEEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEEecCCC
Q 008087 194 TECDIAMLTVEDDEFWEGVLPVEFGEL--PALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAIN 271 (578)
Q Consensus 194 ~~~DlAlLkv~~~~~~~~~~~l~l~~~--~~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~ 271 (578)
+.+|||||+++... .++++.|+++ ...|+.|+++|||.+... +++.|+|+...+..... .....++++|+.++
T Consensus 98 ~~~DlAll~l~~~~---~~~~~~l~~~~~~~~G~~v~~~G~p~~~~~-~~~~g~vs~~~~~~~~~-~~~~~~i~~d~~i~ 172 (237)
T 3lgi_A 98 SLTDLAVLKINATG---GLPTIPINARRVPHIGDVVLAIGNPYNLGQ-TITQGIISATGRIGLNP-TGRQNFLQTDASIN 172 (237)
T ss_dssp TTTTEEEEECCCSS---CCCCCCCCTTCCCCTTBEEEEEECGGGSCS-EEEEEEEEEECCSSCCT-TSCSCCEEECSCCC
T ss_pred CCCCEEEEEecCCC---CCceEeccCcccCCCCCEEEEEECCCCCCC-cEEEEEEEecccccccC-CCcCCEEEEcCccC
Confidence 99999999999763 4778888753 456999999999998665 89999999877653322 22335789999999
Q ss_pred CCCccceEEccCCeEEEEEecccccc----ccCCceeeecchhHHHHHHHHHHcCceeccccC
Q 008087 272 SGNSGGPAFNDKGKCVGIAFQSLKHE----DVENIGYVIPTPVIMHFIQDYEKNGAYTGFPLL 330 (578)
Q Consensus 272 ~G~SGGPlvn~~G~vVGI~~~~~~~~----~~~~~~~aiPi~~i~~~l~~l~~~g~v~~~~~l 330 (578)
+|+|||||||.+|+||||+++.+... ...+++||||++.+++++++|+++|++. ++|+
T Consensus 173 ~G~SGGPlv~~~G~vvGI~s~~~~~~~~~~~~~g~~~aip~~~i~~~~~~l~~~g~~~-~~~~ 234 (237)
T 3lgi_A 173 HGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI-RHHH 234 (237)
T ss_dssp TTCTTCEEECTTCCEEEEECCCCCCCTTSCCCCSCEEEEEHHHHHHHHHHHHHHSSCC-C---
T ss_pred CCCchHHeeCCCCeEEEEEeeeeccCCCCcCcCceEEEEEHHHHHHHHHHHHHcCCCC-Cchh
Confidence 99999999999999999999876542 3567999999999999999999999987 5554
No 14
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=99.96 E-value=1.4e-29 Score=249.70 Aligned_cols=193 Identities=26% Similarity=0.400 Sum_probs=155.2
Q ss_pred cccccccCCCCcEEEEeeeeCCCCCCccccCCCcceEEEEEEEc-CCEEEecccccCCCceEEEEEcCCCcEEEEEEEEE
Q 008087 114 GVARVVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFAIG-GRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAI 192 (578)
Q Consensus 114 ~~~~~~~~~~sVV~I~~~~~~~~~~~p~~~~~~~~~~GsGfvI~-~g~ILT~aHvV~~~~~i~V~~~~~g~~~~a~vv~~ 192 (578)
..+.++++.+|||+|...... ||.......+.||||+|+ +||||||+|||.+...+.|.+ .+++.+.++++..
T Consensus 33 ~~~~~~~~~~sVV~I~~~~~~-----~~~~~~~~~~~GSG~iI~~~G~VLTaaHvv~~~~~i~V~~-~~g~~~~a~v~~~ 106 (231)
T 3tjo_A 33 IADVVEKIAPAVVHIELFRKL-----PFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVEL-KNGATYEAKIKDV 106 (231)
T ss_dssp HHHHHHHHGGGEEEEEEEEEC-----TTSSCEEEEEEEEEEECSTTCEEEEETTTCCSSSEEEEEC-TTSCEEEEEEEEE
T ss_pred HHHHHHHhcCcEEEEEEEecc-----ccCCCccccceEEEEEEeCCCEEEEchhcccCCceEEEEc-CCCCEEEEEEEEe
Confidence 456677778899999987642 344444445789999998 579999999999999999998 5899999999999
Q ss_pred cCCCCEEEEEEeeCCCCCCeeeEEcCCC--CCCCCcEEEEeecCCCCcceEEEeEEeceeeeeecCC--ceeeeEEEEec
Q 008087 193 GTECDIAMLTVEDDEFWEGVLPVEFGEL--PALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHG--STELLGLQIDA 268 (578)
Q Consensus 193 d~~~DlAlLkv~~~~~~~~~~~l~l~~~--~~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~--~~~~~~i~~da 268 (578)
|+.+|||||+++.+. .++++.|++. ...|+.|+++|||.+... +++.|+|+...+...... .....++++|+
T Consensus 107 d~~~DlAlL~l~~~~---~~~~~~l~~~~~~~~G~~v~~~G~p~g~~~-~~~~g~vs~~~~~~~~~~~~~~~~~~i~~da 182 (231)
T 3tjo_A 107 DEKADIALIKIDHQG---KLPVLLLGRSSELRPGEFVVAIGSPFSLQN-TVTTGIVSTTQRGGKELGLRNSDMDYIQTDA 182 (231)
T ss_dssp ETTTTEEEEECCCSS---CCCCCCBCCGGGCCTTCEEEEEEEEETTEE-EEEEEEEEECC-------------CCEEESS
T ss_pred cCCCCEEEEEecCCC---CCCceecCCcCCCCCCCEEEEEECCCCCCC-ceeeEEEeeccccccccccCCCcccEEEEcC
Confidence 999999999999753 5778888753 356999999999998655 889999998765422111 12235789999
Q ss_pred CCCCCCccceEEccCCeEEEEEeccccccccCCceeeecchhHHHHHHHHHH
Q 008087 269 AINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 269 ~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
.+++|+|||||||.+|+||||++... ..+++||||++.++++|+++++
T Consensus 183 ~i~~G~SGGPLv~~~G~vVGI~s~~~----~~g~~~aip~~~i~~~l~~~~~ 230 (231)
T 3tjo_A 183 IINYGNAGGPLVNLDGEVIGINTLKV----TAGISFAIPSDKIKKFLTESHD 230 (231)
T ss_dssp CCCTTTTTSEEECTTSCEEEEEEEEE----ETTEEEEEEHHHHHHHHHHHHT
T ss_pred CcCCCCchhHeecCCCeEEEEEeEEe----cCCeEEEEEHHHHHHHHHHHhh
Confidence 99999999999999999999998854 3579999999999999999864
No 15
>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A
Probab=99.95 E-value=2.7e-27 Score=234.34 Aligned_cols=191 Identities=26% Similarity=0.361 Sum_probs=152.4
Q ss_pred cccccCCCCcEEEEeeeeCCCCCCccccCCCcceEEEEEEEcCCEEEecccccCCCceEEEEEcCCCcEEEEEEEEEcCC
Q 008087 116 ARVVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTE 195 (578)
Q Consensus 116 ~~~~~~~~sVV~I~~~~~~~~~~~p~~~~~~~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~g~~~~a~vv~~d~~ 195 (578)
+.+.++.+|||+|...... ....+.||||+|+++|||||||||.+...+.|.+. + ..+.++++.+|+.
T Consensus 35 ~~~~~~~~svV~I~~~~~~----------~~~~~~GsG~iI~~~~VlTaaH~v~~~~~~~V~~~-~-~~~~~~~v~~~~~ 102 (237)
T 3k6y_A 35 PVVAATEPSVVKIRSLAPR----------CQKVLEGTGFVISPDRVMTNAHVVAGSNNVTVYAG-D-KPFEATVVSYDPS 102 (237)
T ss_dssp HHHHHHGGGEEEEEEEEGG----------GTEEEEEEEEEEETTEEEECGGGTTTCSEEEEEET-T-EEEECEEEEEETT
T ss_pred HHHHHhcCCEEEEEEEecC----------CCcceeEEEEEEECCEEEECHHHcCCCceEEEEEC-C-cEEEEEEEEEcCC
Confidence 3456677799999986521 23456899999999999999999999999999994 4 5889999999999
Q ss_pred CCEEEEEEeeCCCCCCeeeEEcCC-CCCCCCcEEEEeecCCCCcceEEEeEEeceeeee----ecCCc-eeeeEEEEecC
Q 008087 196 CDIAMLTVEDDEFWEGVLPVEFGE-LPALQDAVTVVGYPIGGDTISVTSGVVSRIEILS----YVHGS-TELLGLQIDAA 269 (578)
Q Consensus 196 ~DlAlLkv~~~~~~~~~~~l~l~~-~~~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~----~~~~~-~~~~~i~~da~ 269 (578)
+||||||++.. .++++.|++ ....|+.|+++|||.+... +.+.|.++...... +.... ....++++++.
T Consensus 103 ~DiAll~l~~~----~~~~~~l~~~~~~~G~~v~v~G~p~g~~~-~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (237)
T 3k6y_A 103 VDVAILAVPHL----PPPPLVFAAEPAKTGADVVVLGYPGGGNF-TATPARIREAIRLSGPDIYGDPEPVTRDVYTIRAD 177 (237)
T ss_dssp TTEEEEECTTC----CSCCCCBCSSCCCTTCEEEEEECGGGCSC-EEEEEEEEEEEEEEECCTTCCSSCEEEEEEEEESC
T ss_pred CCEEEEEeCCC----CCCceecCCCCCCCCCEEEEEECCCCCCC-ccceeEEEeeEeecccccccCCCcccccEEEecCc
Confidence 99999999943 577888863 3467999999999988665 77778877653321 11112 33457899999
Q ss_pred CCCCCccceEEccCCeEEEEEeccccccccCCceeeecchhHHHHHHHHHHcCcee
Q 008087 270 INSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEKNGAYT 325 (578)
Q Consensus 270 i~~G~SGGPlvn~~G~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~~g~v~ 325 (578)
+++|+|||||||.+|+||||+++... +..+++|+||++.++++|+++.....+.
T Consensus 178 ~~~GdSGGPLv~~~G~vvGI~s~~~~--~~~~~~~aip~~~v~~~l~~~~~~~~v~ 231 (237)
T 3k6y_A 178 VEQGDSGGPLIDLNGQVLGVVFGAAI--DDAETGFVLTAGEVAGQLAKIGATQPVG 231 (237)
T ss_dssp CCTTCTTCEEECTTSCEEEEEEEECS--SSTTEEEEEEHHHHHGGGGGTTCCSCCC
T ss_pred cCCCccHHHEECCCCEEEEEEEeecc--CCCcEEEEEEHHHHHHHHHHccCCCCCC
Confidence 99999999999999999999998553 4467999999999999999996555554
No 16
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}
Probab=99.90 E-value=1.7e-23 Score=203.09 Aligned_cols=182 Identities=26% Similarity=0.455 Sum_probs=139.5
Q ss_pred CCcEEEEeeeeCCCCCCccccCCCcceEEEEEEEcCCEEEecccccCCCc---eEEEEEc---CCCcEEEE-EEEEEcCC
Q 008087 123 DAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFAIGGRRVLTNAHSVEHYT---QVKLKKR---GSDTKYLA-TVLAIGTE 195 (578)
Q Consensus 123 ~sVV~I~~~~~~~~~~~p~~~~~~~~~~GsGfvI~~g~ILT~aHvV~~~~---~i~V~~~---~~g~~~~a-~vv~~d~~ 195 (578)
+++|+|.. ...+||+... ....||||+|+++||||||||+.+.. .+.|.+. .+++.+.+ +++.+|+.
T Consensus 3 ~~~~~i~~-----~~~~P~~v~~-~~~~c~G~lI~~~~VLTaaHcv~~~~~~~~i~v~~~~~~~~g~~~~~~~v~~~~~~ 76 (210)
T 2as9_A 3 KNVTQVKD-----TNNFPYNGVV-SFKDATGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGD 76 (210)
T ss_dssp CCEEECSC-----TTSTTGGGEE-ECSSCEEEEEETTEEEECHHHHHHCCTTCEEEESCCGGGCCSCEEEEEEEEECSSS
T ss_pred CceEEeec-----CCcCCeEEEE-EeeeEEEEEEeCCEEEECHhHCCccCCCCEEEEEeCcccCCCCEEEEEEEEeCCCC
Confidence 46777744 3367898854 34689999999999999999997543 5666541 36777887 48888999
Q ss_pred CCEEEEEEeeCC---------CCCCeeeEEcCCCCCCCCcEEEEeecCCCCc---ceEEEeEEeceeeeeecCCceeeeE
Q 008087 196 CDIAMLTVEDDE---------FWEGVLPVEFGELPALQDAVTVVGYPIGGDT---ISVTSGVVSRIEILSYVHGSTELLG 263 (578)
Q Consensus 196 ~DlAlLkv~~~~---------~~~~~~~l~l~~~~~~g~~V~~iG~p~g~~~---~sv~~G~Is~~~~~~~~~~~~~~~~ 263 (578)
+|||||+++... |...++++.|.+....|+.|+++|||.+... ..+..|+|+... ..+
T Consensus 77 ~DiAll~l~~~~~~~~~~~~~~~~~v~~i~l~~~~~~g~~v~v~G~p~~~~~~~~l~~~~g~v~~~~----------~~~ 146 (210)
T 2as9_A 77 EDISVMNIEEQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIK----------DNI 146 (210)
T ss_dssp SSCEEEEECSEEEEEETTEEEGGGSCCCCCBCSCCCTTCEEEEEECSSTTTTTSCCEEEEEEEEEEE----------TTE
T ss_pred CcEEEEEecCccccccccccccccccceeecCCCCCCCCEEEEEeCCCCCCCCcceEEeeeEEcccc----------CCe
Confidence 999999998631 2234677777655567999999999986432 245778887652 135
Q ss_pred EEEecCCCCCCccceEEccCCeEEEEEeccccccccCCceeeecchhHHHHHHHHHH
Q 008087 264 LQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 264 i~~da~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
+++++.+|+|+|||||+|.+|+||||++..+...+..+.+|++|++.|++|++....
T Consensus 147 i~~~~~~~~GdSGGPlv~~~g~lvGI~s~g~~~~~~~~~~~~~~~~~i~~f~~~~~~ 203 (210)
T 2as9_A 147 LNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKDFIQKHIE 203 (210)
T ss_dssp EEEECCCCTTCTTCEEECTTSCEEEEECCSCCCTTCSSEEEEECCHHHHHHHHTTCC
T ss_pred EEEcCccCCCCccCcEECCCCeEEEEEecccccCCccccccEEEcHHHHHHHHHhhh
Confidence 788999999999999999899999999987765455677899999999999987643
No 17
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=99.89 E-value=5.2e-23 Score=190.97 Aligned_cols=137 Identities=25% Similarity=0.307 Sum_probs=105.9
Q ss_pred ceEEEEEEEcCCEEEecccccCCCceEEEEEcCCCcEEEEEEEEEcCCCCEEEEEEeeCCCCCCeeeEEcCCCCCCCCcE
Q 008087 148 SSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWEGVLPVEFGELPALQDAV 227 (578)
Q Consensus 148 ~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~g~~~~a~vv~~d~~~DlAlLkv~~~~~~~~~~~l~l~~~~~~g~~V 227 (578)
.+.||||+| +||||||+|||.++..+.|++ +++.++|+++ .|+.+||||||++... ..+.+++|+++... +.|
T Consensus 20 ~~~GSGfii-~g~IlTn~HVV~~~~~i~V~~--dg~~~~a~vv-~d~~~DlAlLkv~~~~--~~~~~l~l~~~~~~-~~v 92 (163)
T 2w5e_A 20 EGKGTGFFS-GNDIVTAAHVVGNNTFVNVCY--EGLMYEAKVR-YMPEKDIAFITCPGDL--HPTARLKLSKNPDY-SCV 92 (163)
T ss_dssp TEEEEEEEE-TTEEEEEHHHHTTCSEEEEEE--TTEEEEEEEE-ECCSSSEEEEECCTTC--CCSCCCCBCSSCCT-TEE
T ss_pred ceeEEEEEE-CCEEEecHHHhCCCceEEEEE--CCEEEEEEEE-EECCCCEEEEEecCCC--CCcceEEcCCCCCC-CEE
Confidence 468999999 999999999999999999998 8899999999 8999999999999753 24556778876554 789
Q ss_pred EEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCccceEEccCCeEEEEEeccccccccCCceeeec
Q 008087 228 TVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIP 307 (578)
Q Consensus 228 ~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~~~~~~~aiP 307 (578)
+++|+|.+....+...+.+ .+ ..++.++++++|||||||||.+|+||||+++.. +..+ +|+|.
T Consensus 93 ~~~G~p~~~~~~s~~~~~~---------~g----~~~~~~a~i~pGnSGGPl~n~~G~VVGI~~~~~---g~~g-g~ai~ 155 (163)
T 2w5e_A 93 TVMAYVNEDLVVSTAAAMV---------YG----NTLSYAVRTQDGMSGAPVCDKYCRVLAVHQTNT---GYTG-GAVII 155 (163)
T ss_dssp EEEEEETTEEEEEEEEEEE---------ET----TEEEEECSCSSCCTTCEEECTTSCEEEEEEEEE---TTEE-EEEEC
T ss_pred EEEEeCCCCEEEEEeccEE---------cC----CeEEEEEEeCCCCchhhEEcCCCEEEEEEccCc---cccc-CEEEe
Confidence 9999997621111111111 11 246777999999999999999999999998743 3334 67665
Q ss_pred c
Q 008087 308 T 308 (578)
Q Consensus 308 i 308 (578)
.
T Consensus 156 ~ 156 (163)
T 2w5e_A 156 D 156 (163)
T ss_dssp C
T ss_pred c
Confidence 3
No 18
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A
Probab=99.83 E-value=1.6e-20 Score=180.51 Aligned_cols=171 Identities=23% Similarity=0.412 Sum_probs=122.3
Q ss_pred CCCCCccccCCCcceEEEEEEEcCCEEEecccccCCCce----EEEEE---cCCCcEEEE-EEEEEcCCCCEEEEEEeeC
Q 008087 135 PNFSLPWQRKRQYSSSSSGFAIGGRRVLTNAHSVEHYTQ----VKLKK---RGSDTKYLA-TVLAIGTECDIAMLTVEDD 206 (578)
Q Consensus 135 ~~~~~p~~~~~~~~~~GsGfvI~~g~ILT~aHvV~~~~~----i~V~~---~~~g~~~~a-~vv~~d~~~DlAlLkv~~~ 206 (578)
....+||+.... ...|+||+|+++||||||||+.+... +.+.+ ..+++.+.+ +++.+|+.+|||||+++.+
T Consensus 9 ~~~~~P~~v~~~-~~~c~G~lI~~~~VLTaaHcv~~~~~~~~~v~v~~~~~~~~~~~~~~~~i~~~~~~~DiAll~l~~~ 87 (200)
T 2w7s_A 9 DATKEPYNSVVA-FVGGTGVVVGKNTIVTNKHIAKSNDIFKNRVSAHHSSKGKGGGNYDVKDIVEYPGKEDLAIVHVHET 87 (200)
T ss_dssp CTTSTTGGGEEE-ETTEEEEEEETTEEEECHHHHHHHHHTTCCEEETCCSSSCCCCEECEEEEEECSSSSSCEEEEECSB
T ss_pred ccccCCcccccc-cceEEEEEEECCEEEEChhhcCCcccCCcEEEEEecCccCCCcEEEEEEEecCCCcceEEEEEECCC
Confidence 345788988643 45799999999999999999975433 44432 135667776 5788899999999999974
Q ss_pred -----CCCCCeeeEEcCCCCCCCCcEEEEeecCCCCc---ceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCccce
Q 008087 207 -----EFWEGVLPVEFGELPALQDAVTVVGYPIGGDT---ISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGP 278 (578)
Q Consensus 207 -----~~~~~~~~l~l~~~~~~g~~V~~iG~p~g~~~---~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGP 278 (578)
.+...++++.|......|+.++++|||.+... ..+..|+++... ..++++++.+++|+||||
T Consensus 88 ~~~~~~~~~~v~pi~l~~~~~~g~~v~v~G~p~g~~~~~~~~~~~g~v~~~~----------~~~~~~~~~~~~GdSGGP 157 (200)
T 2w7s_A 88 STEGLNFNKNVSYTKFADGAKVKDRISVIGYPKGAQTKYKMFESTGTINHIS----------GTFMEFDAYAQPGNSGSP 157 (200)
T ss_dssp CTTSCBGGGSCCCCCBCCCCCTTCEEEEEECTTHHHHTSCEEEEEEEEEEEE----------TTEEEECSCCCTTCTTCE
T ss_pred CCCcccccccccceeccccCCCCCEEEEEECCCCCCCccceEEeEEEEEccC----------CCEEEEcceeCCCCccCe
Confidence 22335778888755567999999999976322 235677777642 135788999999999999
Q ss_pred EEccCCeEEEEEeccccccccCCceeee-cchhHHHHHHH
Q 008087 279 AFNDKGKCVGIAFQSLKHEDVENIGYVI-PTPVIMHFIQD 317 (578)
Q Consensus 279 lvn~~G~vVGI~~~~~~~~~~~~~~~ai-Pi~~i~~~l~~ 317 (578)
|+|.+|++|||++..... +....+|++ ....++.++++
T Consensus 158 l~~~~g~lvGI~s~g~~~-~~~~~~~~v~~~~~~~~wI~~ 196 (200)
T 2w7s_A 158 VLNSKHELIGILYAGSGK-DESEKNFGVYFTPQLKEFIQN 196 (200)
T ss_dssp EECTTSCEEEEEEEEC-----CCCEEEEECCHHHHHHHHH
T ss_pred EECcCCEEEEEEeccccC-CCCccceeeecHHHHHHHHHh
Confidence 999889999999985532 113345555 44566666654
No 19
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A
Probab=99.81 E-value=5.5e-20 Score=182.19 Aligned_cols=162 Identities=23% Similarity=0.349 Sum_probs=115.6
Q ss_pred ceEEEEEEEcCCEEEecccccCCCce--EEEEEc--C----CC------cEEEEEEEEEcC---CCCEEEEEEeeCC---
Q 008087 148 SSSSSGFAIGGRRVLTNAHSVEHYTQ--VKLKKR--G----SD------TKYLATVLAIGT---ECDIAMLTVEDDE--- 207 (578)
Q Consensus 148 ~~~GsGfvI~~g~ILT~aHvV~~~~~--i~V~~~--~----~g------~~~~a~vv~~d~---~~DlAlLkv~~~~--- 207 (578)
...|+||+|+++||||||||+.+... +.|.+. . ++ ..+.++.+..|+ .+|||||+++.+.
T Consensus 54 ~~~c~G~lI~~~~VLTAaHcv~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~DiAll~l~~~~~~~ 133 (242)
T 1agj_A 54 QTSATGVLIGKNTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEPFGAGVDLALIRLKPDQNGV 133 (242)
T ss_dssp TEEEEEEECSSSEEEECHHHHGGGTTCGGGEEEEETCEECTTSCEECTTCCEEEEEEESCTTCTTSCCEEEEECCCTTSC
T ss_pred CccEEEEEEeCCEEEEChhhcccCCCCceEEEEecCccccccccccccCCceeEEEEEeCCCCCCCcEEEEEEcCCCccc
Confidence 35899999999999999999976432 334441 1 11 357888888888 8999999999763
Q ss_pred -CCCCeeeEEcCCC--CCCCCcEEEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCccceEEccCC
Q 008087 208 -FWEGVLPVEFGEL--PALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKG 284 (578)
Q Consensus 208 -~~~~~~~l~l~~~--~~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGPlvn~~G 284 (578)
+...++++.|++. ...|+.++++|||.+..........+.-.. + ...+++++.+|+|+|||||++.+|
T Consensus 134 ~~~~~v~~i~L~~~~~~~~g~~~~v~Gwg~~~~~~~l~~~~~~~~~---~------~~~~~~~~~~c~GdSGGPl~~~~g 204 (242)
T 1agj_A 134 SLGDKISPAKIGTSNDLKDGDKLELIGYPFDHKVNQMHRSEIELTT---L------SRGLRYYGFTVPGNSGSGIFNSNG 204 (242)
T ss_dssp CHHHHSCCCEECCSTTCCTTCEEEEEECCTTTSTTCCEEEEEEECC---G------GGSEEEECCCCGGGTTCEEECTTS
T ss_pred cccccccceecCccccCCCCCEEEEEeCCCCCCCccceeeeeeEec---C------CceEEEeCCcCCCCCchHhcccCC
Confidence 1224788888753 356899999999987543222222221110 0 023677889999999999999899
Q ss_pred eEEEEEecccccc-ccCCceeeecch-hHHHHHHHH
Q 008087 285 KCVGIAFQSLKHE-DVENIGYVIPTP-VIMHFIQDY 318 (578)
Q Consensus 285 ~vVGI~~~~~~~~-~~~~~~~aiPi~-~i~~~l~~l 318 (578)
+||||++...... +..+.+|++|++ .++++|++.
T Consensus 205 ~lvGI~s~g~~c~~~~~~~~~~~~i~~~~~~~l~~~ 240 (242)
T 1agj_A 205 ELVGIHSSKVSHLDREHQINYGVGIGNYVKRIINEK 240 (242)
T ss_dssp EEEEEEEEEEECSSTTCEEEEEEECCHHHHHHHHHH
T ss_pred EEEEEEeccccccCcCCCceeeEEehHHHHHHHHhh
Confidence 9999999865422 335688999996 888888764
No 20
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Probab=99.81 E-value=2.5e-19 Score=172.37 Aligned_cols=173 Identities=26% Similarity=0.446 Sum_probs=120.7
Q ss_pred CCCCCccccCCCcceEEEEEEEcCCEEEecccccCCCc---eEEEEE---cCCCcEEE-EEEEEEcCCCCEEEEEEeeCC
Q 008087 135 PNFSLPWQRKRQYSSSSSGFAIGGRRVLTNAHSVEHYT---QVKLKK---RGSDTKYL-ATVLAIGTECDIAMLTVEDDE 207 (578)
Q Consensus 135 ~~~~~p~~~~~~~~~~GsGfvI~~g~ILT~aHvV~~~~---~i~V~~---~~~g~~~~-a~vv~~d~~~DlAlLkv~~~~ 207 (578)
....+||+... ..+.|+||+|+++||||||||+.+.. .+.+.. ..++..+. ++++.++..+|||||+++...
T Consensus 9 ~~~~~P~~~~~-~~~~c~G~lI~~~~VLTaaHcv~~~~~~~~v~v~~~~~~~~~~~~~~~~i~~~~~~~DiAll~l~~~~ 87 (204)
T 2vid_A 9 DTNIFPYTGVV-AFKSATGFVVGKNTILTNKHVSKNYKVGDRITAHPNSDKGNGGIYSIKKIINYPGKEDVSVIQVEERA 87 (204)
T ss_dssp CTTSTTGGGEE-ECSSCEEEEEETTEEEECHHHHTTCCTTCEEEESCCSSSCCSCEEEEEEEEECSSSSCCEEEEECSEE
T ss_pred cCCcCchhheE-EeeeEEEEEEECCEEEEChhHCCCccCCceEEEEeccccCCCcEEEeeEEecCCCCCeEEEEEEcCcc
Confidence 34578898843 34689999999999999999998654 455432 12455666 577778889999999998531
Q ss_pred ---------CCCCeeeEEcCCCCCCCCcEEEEeecCCCCc---ceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCc
Q 008087 208 ---------FWEGVLPVEFGELPALQDAVTVVGYPIGGDT---ISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNS 275 (578)
Q Consensus 208 ---------~~~~~~~l~l~~~~~~g~~V~~iG~p~g~~~---~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~S 275 (578)
+...+.++.|.+....|+.++++|||.+... .....|.++.... .+++.++.+++|+|
T Consensus 88 ~~~~~~~~~~~~~v~pi~l~~~~~~g~~~~~~G~g~~~~~~~~~~~~~g~v~~~~~----------~~~~~~~~~~~GdS 157 (204)
T 2vid_A 88 IERGPKGFNFNDNVTPFKYAAGAKAGERIKVIGYPHPYKNKYVLYESTGPVMSVEG----------SSIVYSAHTESGNS 157 (204)
T ss_dssp EEEETTEEEHHHHCCCCCBCSCCCTTCEEEEEECCCCCC--CCCEEEEEEEEEEET----------TEEEECCCCCGGGT
T ss_pred cccccccccccccccccccCCcCCCCCEEEEEeCCCCCCCCcceEeeccEEeeccC----------CeEEEecccCCCCc
Confidence 1123467777765567999999999986442 2345677665321 25778889999999
Q ss_pred cceEEccCCeEEEEEeccccccccCCceeee-cchhHHHHHHHH
Q 008087 276 GGPAFNDKGKCVGIAFQSLKHEDVENIGYVI-PTPVIMHFIQDY 318 (578)
Q Consensus 276 GGPlvn~~G~vVGI~~~~~~~~~~~~~~~ai-Pi~~i~~~l~~l 318 (578)
||||++.+|++|||++...........+|++ ....+++++++.
T Consensus 158 GGPl~~~~g~lvGI~s~g~~~~~~~~~~~~~~~~~~~~~wI~~~ 201 (204)
T 2vid_A 158 GSPVLNSNNELVGIHFASDVKNDDNRNAYGVYFTPEIKKFIAEN 201 (204)
T ss_dssp TCEEECTTSCEEEEEEEECC---CCCCEEEECCCHHHHHHHHHH
T ss_pred cCcEECCCCeEEEEEecCccCCCcccccceeEeCHHHHHHHHhh
Confidence 9999998999999999854211223445544 346677777654
No 21
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ...
Probab=99.79 E-value=2.9e-18 Score=164.39 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=117.6
Q ss_pred EEEEEEEcC---CEEEecccccCCCceEEEEEcCCCcEEEEEEEEEc-CCCCEEEEEEeeCCCCCCeeeE-------EcC
Q 008087 150 SSSGFAIGG---RRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIG-TECDIAMLTVEDDEFWEGVLPV-------EFG 218 (578)
Q Consensus 150 ~GsGfvI~~---g~ILT~aHvV~~~~~i~V~~~~~g~~~~a~vv~~d-~~~DlAlLkv~~~~~~~~~~~l-------~l~ 218 (578)
..+||++.+ +|||||+||+..+..+. . + ..+.++++..| +..|+||||++.... ..+.+ .+.
T Consensus 17 CT~Gf~v~~~~~~~ilTa~Hc~~~~~~v~--~--~-~~~~g~vv~~~~~~~D~Avi~i~~~~~--~~~~v~~~g~~~~v~ 89 (198)
T 2h5c_A 17 CSVGFSVTRGATKGFVTAGHCGTVNATAR--I--G-GAVVGTFAARVFPGNDRAWVSLTSAQT--LLPRVANGSSFVTVR 89 (198)
T ss_dssp EECCEEEEETTEEEEEECGGGCCTTCEEE--E--T-TEEEEEEEEEECSBSCEEEEEECTTSE--EEEEEEETTEEEECC
T ss_pred CCcCEEEecCCeeEEEECcccCCCCCEEE--e--C-CcEEEEEEecCCCCCCEEEEEeCCCCc--cCceEecCCceEEec
Confidence 346999953 59999999999888775 2 4 47889999999 999999999987521 12222 233
Q ss_pred --CCCCCCCcEEEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCccceEEccCCeEEEEEecc-cc
Q 008087 219 --ELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQS-LK 295 (578)
Q Consensus 219 --~~~~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGPlvn~~G~vVGI~~~~-~~ 295 (578)
....+|+.|..+|+|.+ ++.|+|+.+++...........++|+++++++|||||||+|.+|++|||+++. +.
T Consensus 90 g~~~~~vG~~V~~~G~~tg-----~t~G~V~~~~~~~~~~~g~~~~~i~t~~~~~~GDSGGPl~~~~g~~vGI~s~~~~~ 164 (198)
T 2h5c_A 90 GSTEAAVGAAVCRSGRTTG-----YQCGTITAKNVTANYAEGAVRGLTQGNACMGRGDSGGSWITSAGQAQGVMSGGNVQ 164 (198)
T ss_dssp BCCCCCTTCEEEEEETTTE-----EEEEEEEEEEEEEEETTEEEEEEEEECSCCBTTCTTCEEECTTCBEEEEEEEECCC
T ss_pred CcccCCCCCeEEEeecCcc-----eEEEEEEeeeeEEEeCCCeEeeeEEecccCCCCcceeEEEeeCCEEEEEEEeecCc
Confidence 24578999999999865 68899999887543222223457999999999999999999899999999986 22
Q ss_pred c--c-----ccCCceeeecchhHHHHH
Q 008087 296 H--E-----DVENIGYVIPTPVIMHFI 315 (578)
Q Consensus 296 ~--~-----~~~~~~~aiPi~~i~~~l 315 (578)
. . ...+++|++|++.++..+
T Consensus 165 ~~~~~c~~~~~~g~~f~~Pi~~vl~~~ 191 (198)
T 2h5c_A 165 SNGNNCGIPASQRSSLFERLQPILSQY 191 (198)
T ss_dssp TTSBSTTSCGGGCCEEEEEHHHHHHHH
T ss_pred cCCCccccccCCceEEEEEHHHHHHHC
Confidence 1 1 234689999999988665
No 22
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=99.79 E-value=6.3e-20 Score=165.08 Aligned_cols=124 Identities=25% Similarity=0.412 Sum_probs=109.0
Q ss_pred CCceeeecchhHHHHHHHHHHcCceeccccCCcccccccC--hhhhhhhccccC-CCCcEEEEeCCCCcccCCCCCCCEE
Q 008087 300 ENIGYVIPTPVIMHFIQDYEKNGAYTGFPLLGVEWQKMEN--PDLRVAMSMKAD-QKGVRIRRVDPTAPESEVLKPSDII 376 (578)
Q Consensus 300 ~~~~~aiPi~~i~~~l~~l~~~g~v~~~~~lGi~~~~~~~--~~~~~~lgl~~~-~~Gv~V~~V~p~spA~~GL~~GDiI 376 (578)
+|+|||||++.+++++++|.++|++. |+|||+.++.+.. .++++.+|++.+ ..|++|..|.++|||+.||++||+|
T Consensus 2 ~GigFAIP~~~~~~v~~~L~~~G~v~-r~~LGv~~~~~~~~~~~~~~~lgl~~~~~~g~~V~~V~~~spA~aGL~~GD~I 80 (134)
T 2l97_A 2 EGLGFAIPANDAINIIEQLEKNGKVT-RPALGIQMVNLSNVSTSDIRRLNIPSNVTSGVIVRSVQSNMPANGHLEKYDVI 80 (134)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCSS-CCCCCCEEEESSSSCHHHHHHHSSCSSSCSCEEEEECSTTSGGGTTSCSSCEE
T ss_pred CcEEEEeEHHHHHHHHHHHHHcCCEe-eeEeeEEEEECCchhHHHHHHcCCCcCCCCCEEEEEECCCCchHHCCCCCCEE
Confidence 57999999999999999999999998 9999999998832 277888999842 5799999999999998899999999
Q ss_pred EEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEEEEEecccc
Q 008087 377 LSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNITLATHR 434 (578)
Q Consensus 377 l~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v~l~~~~ 434 (578)
++|||++|.++.+ +...+.....|++++|+|+|+|+.+++++++...+
T Consensus 81 ~~inG~~v~~~~~----------l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~ 128 (134)
T 2l97_A 81 TKVDDKEIASSTD----------LQSALYNHSIGDTIKITYYRNGKEETTSIKLNKLE 128 (134)
T ss_dssp EEETTEECCCHHH----------HHHHHHHSSTTCEEEEEEEETTEEEEEEEECCCC-
T ss_pred EEECCEEcCCHHH----------HHHHHHhCCCCCEEEEEEEECCEEEEEEEEEcccC
Confidence 9999999999877 55667666689999999999999999999887653
No 23
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A
Probab=99.78 E-value=7.2e-18 Score=170.17 Aligned_cols=159 Identities=23% Similarity=0.335 Sum_probs=116.3
Q ss_pred ceEEEEEEEcCCEEEecccccCCCce----EEEEEc-------CCCcEEEEEEEEEcCCCCEEEEEEeeCC----CCCCe
Q 008087 148 SSSSSGFAIGGRRVLTNAHSVEHYTQ----VKLKKR-------GSDTKYLATVLAIGTECDIAMLTVEDDE----FWEGV 212 (578)
Q Consensus 148 ~~~GsGfvI~~g~ILT~aHvV~~~~~----i~V~~~-------~~g~~~~a~vv~~d~~~DlAlLkv~~~~----~~~~~ 212 (578)
...|+||+|+++|||||||||.+... +.|++. .++....++++..+..+|||||+++... +...+
T Consensus 33 ~~~C~G~lI~~~~VLTAAHCv~~~~~~~~~i~V~~G~~~~~~~~~g~~~~~~i~~~~~~~DIALLkL~~~~~~~~~~~~v 112 (274)
T 2o8l_A 33 TFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVV 112 (274)
T ss_dssp EEEEEEEEEETTEEEECHHHHHTTTTCGGGEEEEETCCBTTBCTTCCEEEEEEEECSSSSCCEEEEECCCTTSCCTTTSS
T ss_pred CEEEEEEEEECCEEEEChhhCcccCCCcceEEEEecccCcccccCccEEEEEEEeCCCCCcEEEEEecCccccccccccc
Confidence 35899999999999999999976543 777652 2344456677788889999999999763 34568
Q ss_pred eeEEcCCC--CCCCCcEEEEeecCCCCc--ceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCccceEEccCCeEEE
Q 008087 213 LPVEFGEL--PALQDAVTVVGYPIGGDT--ISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVG 288 (578)
Q Consensus 213 ~~l~l~~~--~~~g~~V~~iG~p~g~~~--~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGPlvn~~G~vVG 288 (578)
.++.|... ...|+.++++|||.+... .....|.++.... .+++.++.+|.|+||||||+.+|+|||
T Consensus 113 ~pi~L~~~~~~~~g~~v~v~Gwg~~~~~~~~~~~~g~i~~~~~----------~~i~~~~~~c~GdSGGPLv~~~g~lvG 182 (274)
T 2o8l_A 113 KPATMSNNAETQTNQNITVTGYPGDKPVATMWESKGKITYLKG----------EAMQYDLSTTGGNSGSPVFNEKNEVIG 182 (274)
T ss_dssp CCCEECCCTTCCTTCEEEEEECCTTSSTTCEEEEEEEEEEEET----------TEEEESCCCCTTCTTCEEECTTSCEEE
T ss_pred ccccccccccccCCCEEEEEECCCCCCCceEEecCceEEecCC----------CeEEeCcccCCCCchhheeccCCeEEE
Confidence 88999753 356899999999976432 2345666654321 257888999999999999998999999
Q ss_pred EEeccccccccCCceeeecchhHHHHHHHHH
Q 008087 289 IAFQSLKHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 289 I~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
|++.+... ..+.++++. ..++.+++++.
T Consensus 183 IvS~G~~~--~~~~~~~~~-~~~~~wI~~~i 210 (274)
T 2o8l_A 183 IHWGGVPN--EFNGAVFIN-ENVRNFLKQNI 210 (274)
T ss_dssp EEEEEETT--TEEEEEECC-HHHHHHHHHHC
T ss_pred EEeCcccC--CCCceEEec-HHHHHHHHHHH
Confidence 99885532 223455553 55666776654
No 24
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1
Probab=99.76 E-value=9.2e-18 Score=168.83 Aligned_cols=159 Identities=23% Similarity=0.343 Sum_probs=116.0
Q ss_pred ceEEEEEEEcCCEEEecccccCCCc----eEEEEEc-------CCCcEEEEEEEEEcCCCCEEEEEEeeCC----CCCCe
Q 008087 148 SSSSSGFAIGGRRVLTNAHSVEHYT----QVKLKKR-------GSDTKYLATVLAIGTECDIAMLTVEDDE----FWEGV 212 (578)
Q Consensus 148 ~~~GsGfvI~~g~ILT~aHvV~~~~----~i~V~~~-------~~g~~~~a~vv~~d~~~DlAlLkv~~~~----~~~~~ 212 (578)
...|+||+|+++|||||||||.+.. .+.|++. .+++...++++..+..+||||||+.... +...+
T Consensus 33 ~~~CgG~lI~~~~VLTAAHCv~~~~~~~~~i~V~~G~~~~~~~~~g~~~~~~i~~~~~~~DIALLkL~~~~~~~~~~~~v 112 (268)
T 1wcz_A 33 TFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVV 112 (268)
T ss_dssp EEEEEEEECSSSEEEECHHHHGGGTTCGGGEEEEETCCBTTBCTTCCEEEEEEEECSSSSCCEEEEECCCTTSCCHHHHS
T ss_pred CEEEEEEEEECCEEEEChhhCCCccCCcceEEEEecccCcccccCCcEEEEEEecCCCCCcEEEEEecCccccccccccc
Confidence 3689999999999999999997543 3777652 2344455677778888999999999763 22357
Q ss_pred eeEEcCCC--CCCCCcEEEEeecCCCCc--ceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCccceEEccCCeEEE
Q 008087 213 LPVEFGEL--PALQDAVTVVGYPIGGDT--ISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVG 288 (578)
Q Consensus 213 ~~l~l~~~--~~~g~~V~~iG~p~g~~~--~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGPlvn~~G~vVG 288 (578)
.++.|... ...|+.++++||+.+... .....|+|+.... .+++.++.+|.|+|||||++.+|+|||
T Consensus 113 ~pi~L~~~~~~~~g~~v~v~Gwg~~~~~~~~~~~~g~i~~~~~----------~~i~~~~~~c~GdSGGPLv~~~g~lvG 182 (268)
T 1wcz_A 113 KPATMSNNAETQVNQNITVTGYPGDKPVATMWESKGKITYLKG----------EAMQYDLSTTGGNSGSPVFNEKNEVIG 182 (268)
T ss_dssp CCCCBCCCSSCCTTCEEEEEECCTTSSTTCEEEEEEEEEEEET----------TEEEESBCCCTTCTTCEEECTTSCEEE
T ss_pred ceeecccccccCCCCEEEEEECCCCCCCceEEeecceEEeeCC----------CeEEEecccCCCCccCeEEccCCEEEE
Confidence 78888753 356899999999976432 2345676665321 257888999999999999998899999
Q ss_pred EEeccccccccCCceeeecchhHHHHHHHHH
Q 008087 289 IAFQSLKHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 289 I~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
|++.+... ..+.++++. ..++.+++++.
T Consensus 183 IvS~G~~~--~~~~~~~~~-~~~~~wI~~~i 210 (268)
T 1wcz_A 183 IHWGGVPN--EFNGAVFIN-ENVRNFLKQNI 210 (268)
T ss_dssp EEEEEETT--TEEEEEECC-HHHHHHHHHHC
T ss_pred EEeCCccC--CcceeEEcC-HHHHHHHHHHH
Confidence 99885532 234566664 56677776654
No 25
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Probab=99.74 E-value=3.2e-18 Score=170.04 Aligned_cols=146 Identities=22% Similarity=0.284 Sum_probs=104.2
Q ss_pred ceEEEEEEEcCCEEEecccccCCCc----eEEEEEcCC-----------CcEEEEEEEEEcC---CCCEEEEEEeeCC--
Q 008087 148 SSSSSGFAIGGRRVLTNAHSVEHYT----QVKLKKRGS-----------DTKYLATVLAIGT---ECDIAMLTVEDDE-- 207 (578)
Q Consensus 148 ~~~GsGfvI~~g~ILT~aHvV~~~~----~i~V~~~~~-----------g~~~~a~vv~~d~---~~DlAlLkv~~~~-- 207 (578)
...|+||+|+++||||||||+.+.. .+.+..... +..+.++.+..|+ .+|||||+++.+.
T Consensus 47 ~~~c~G~lI~~~~VLTAaHcv~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~i~~hp~~~~~DiALLkl~~~~~~ 126 (246)
T 1qtf_A 47 STLATGVLIGKNTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYGQGLDLAIIKLKPNEKG 126 (246)
T ss_dssp TEEEEEEEEETTEEEECHHHHGGGTTCGGGEEEEETCCCCTTTTCCCCTTCCEEEEEEESCTTCTTSCCEEEEECCCTTS
T ss_pred CceEEEEEEECCEEEECHHhCCCCCCCceEEEEecCccccccccccccCCceEEEEEEEeCCCCCCCCEEEEEEeCCccc
Confidence 4689999999999999999997643 366655210 1468889999888 9999999999763
Q ss_pred --CCCCeeeEEcCCC--CCCCCcEEEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCccceEEccC
Q 008087 208 --FWEGVLPVEFGEL--PALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDK 283 (578)
Q Consensus 208 --~~~~~~~l~l~~~--~~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGPlvn~~ 283 (578)
+...++++.|++. ...|+.|+++|||.+..........+.-. . .++.++.+|+|+|||||+|.+
T Consensus 127 ~~~~~~v~~i~L~~~~~~~~g~~v~v~G~p~g~~~~~~~~~~~~~~-------~-----~~~~~~~~~~GdSGGPlv~~~ 194 (246)
T 1qtf_A 127 ESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNYSAYSLYQSQIEMF-------N-----DSQYFGYTEVGNSGSGIFNLK 194 (246)
T ss_dssp CCHHHHSCCCCCCSSCCCCTTCEEEEEECCTTTSTTCCEEEEEEES-------S-----SSBEESCCCGGGTTCEEECTT
T ss_pred cccccceeeeecCCccccCCCCEEEEEECCCCCCCceeEeeeeeec-------C-----cEEEeCCCCCCCchhheECCC
Confidence 2224778888753 35689999999998754311111111100 0 124467789999999999989
Q ss_pred CeEEEEEeccccccccCCceeeecchhHH
Q 008087 284 GKCVGIAFQSLKHEDVENIGYVIPTPVIM 312 (578)
Q Consensus 284 G~vVGI~~~~~~~~~~~~~~~aiPi~~i~ 312 (578)
|+||||++... .++++|++.+.
T Consensus 195 g~lvGI~s~g~-------~~~~ipi~~~~ 216 (246)
T 1qtf_A 195 GELIGIHSGKG-------GQHNLPIGVFF 216 (246)
T ss_dssp CCEEEEEEEEE-------TTTTEEEEEET
T ss_pred CEEEEEEeccc-------cCccccchhhh
Confidence 99999998743 25778876543
No 26
>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1
Probab=99.72 E-value=1.4e-16 Score=151.44 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=112.4
Q ss_pred EEE-EEEEcC---CEEEecccccCCCceEEEEEcCCCcEEEEEEEEEc-CCCCEEEEEEeeCCCCCCeeeEE--------
Q 008087 150 SSS-GFAIGG---RRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIG-TECDIAMLTVEDDEFWEGVLPVE-------- 216 (578)
Q Consensus 150 ~Gs-GfvI~~---g~ILT~aHvV~~~~~i~V~~~~~g~~~~a~vv~~d-~~~DlAlLkv~~~~~~~~~~~l~-------- 216 (578)
.|| ||++.+ +|||||+||+.+...+. + .++....+++...+ +..|+||||++.+.. ..+.+.
T Consensus 13 ~CT~Gfiv~~~g~~~ilT~~Hv~~~~~~v~--~-~~~~~~~g~~~~~~~~~~DiAlikl~~~~~--~~~~v~~~~g~~~~ 87 (187)
T 1hpg_A 13 RCSAAFNVTKGGARYFVTAGHCTNISANWS--A-SSGGSVVGVREGTSFPTNDYGIVRYTDGSS--PAGTVDLYNGSTQD 87 (187)
T ss_dssp EEECCEEEEETTEEEEEECHHHHTTCSEEE--S-STTCCEEEEEEEEECSBSCEEEEEECSSCC--CCSEEECSSSCEEE
T ss_pred cCcceEEEEECCeeEEEECcccCCCCCeEE--e-CCCceeEEEEeCccCCCCCEEEEEeCCCCC--cCceEEecCCceee
Confidence 455 999963 59999999999887654 3 35544556666666 789999999987421 112233
Q ss_pred cC--CCCCCCCcEEEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCccceEEccCCeEEEEEeccc
Q 008087 217 FG--ELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSL 294 (578)
Q Consensus 217 l~--~~~~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGPlvn~~G~vVGI~~~~~ 294 (578)
+. ..+.+|+.|.++|++.+ .+.|+|+.+++...........+||+++.+++|+|||||++. +++|||+++..
T Consensus 88 i~~~~~~~~G~~v~~~G~~~g-----~t~G~v~~~~~~v~~~~~~~~~~i~t~~~~~~GdSGgpl~~~-~~~vGi~s~~~ 161 (187)
T 1hpg_A 88 ISSAANAVVGQAIKKSGSTTK-----VTSGTVTAVNVTVNYGDGPVYNMVRTTACSAGGDSGGAHFAG-SVALGIHSGSS 161 (187)
T ss_dssp CCEECCCCTTCEEEEEETTTE-----EEEEEEEEEEEEEEETTEEEEEEEEECCCCCTTCTTCEEEET-TEEEEEEEEES
T ss_pred eccccCCCCCCEEEEEEcCCC-----EeEEEEEEeEEEEEeCCCeEeeeEEeccccCCCCCCCeEEEC-CEEEEEEEeeC
Confidence 32 34578999999999864 688999988765432222234579999999999999999986 59999998754
Q ss_pred cccccCCceeeecchhHHHHH
Q 008087 295 KHEDVENIGYVIPTPVIMHFI 315 (578)
Q Consensus 295 ~~~~~~~~~~aiPi~~i~~~l 315 (578)
..-...+.+|++|++.++..|
T Consensus 162 ~~~~~~~~~~~~~i~~~~~~l 182 (187)
T 1hpg_A 162 GCSGTAGSAIHQPVTEALSAY 182 (187)
T ss_dssp CCBTTBCCCEEEEHHHHHHHH
T ss_pred CCCCCCCceEEEEHHHHHHHc
Confidence 211234688999999877654
No 27
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=99.70 E-value=2.7e-17 Score=159.26 Aligned_cols=147 Identities=13% Similarity=0.144 Sum_probs=112.0
Q ss_pred CCCcEEEEeCCCCcccC-CCCCC-CEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEEEEE
Q 008087 352 QKGVRIRRVDPTAPESE-VLKPS-DIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNIT 429 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-GL~~G-DiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v~ 429 (578)
..|++|..|.++|||++ ||++| |+|++|||++|.+|.++ ...+.....|+++.|+|+|++...+.+++
T Consensus 15 ~~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~~~~~----------~~~~~~~~~g~~v~l~v~R~~~~~~~~v~ 84 (209)
T 3rle_A 15 TEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDT----------LKDLLKANVEKPVKMLIYSSKTLELRETS 84 (209)
T ss_dssp SEEEEEEEECTTSHHHHTTCCTTTEEEEEETTEECCSSSSH----------HHHHHHHTTTSCEEEEEEETTTCCEEEEE
T ss_pred CCEEEEEEECCCCHHHHCCCCcCCeEEEEECCEECcCHHHH----------HHHHHhcCCCCEEEEEEEecCCceEEEEE
Confidence 56899999999999999 99999 99999999999999884 34444556789999999997655455555
Q ss_pred ecccccccCCCCCCCCCCceeeccEEEeeh-HHHHHHhchhhhhhhhhccccccccccccCCCceEEEEe----ecCCcC
Q 008087 430 LATHRRLIPSHNKGRPPSYYIIAGFVFSRC-LYLISVLSMERIMNMKLRSSFWTSSCIQCHNCQMSSLLW----CLRSPL 504 (578)
Q Consensus 430 l~~~~~~~~~~~~~~~p~~~~~~Gl~~~~~-p~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~vvvs~----v~A~~a 504 (578)
+...... . ...+.|+.+..+ +.... ..++++.. ++|+++
T Consensus 85 l~p~~~~--~--------~~~~lGi~~~~~~~~~~~--------------------------~~Gv~V~~V~~~spA~~a 128 (209)
T 3rle_A 85 VTPSNLW--G--------GQGLLGVSIRFCSFDGAN--------------------------ENVWHVLEVESNSPAALA 128 (209)
T ss_dssp ECCCSSS--S--------SSSSSCEEEEEEECTTGG--------------------------GSCEEEEEECTTSHHHHH
T ss_pred Ecccccc--c--------ccCccceEEeecChhHcc--------------------------ccceEEEEeCCCChHHHC
Confidence 5321110 0 111457766654 22110 13565555 479999
Q ss_pred CCCC-CCEEEEeCCeecCCHHHHHHHHHhcCCCeEEEEEecC
Q 008087 505 CLNC-FNKVLAFNGNPVKNLKSLANMVENCDDEFLKFDLEYD 545 (578)
Q Consensus 505 Gl~~-GD~I~~VNG~~V~~~~~l~~~l~~~~~~~v~l~v~R~ 545 (578)
||++ ||+|++|||+ |.++++|.++|++.+++.+.|++.|+
T Consensus 129 Gl~~~GD~I~~ing~-v~~~~~l~~~l~~~~g~~v~l~v~r~ 169 (209)
T 3rle_A 129 GLRPHSDYIIGADTV-MNESEDLFSLIETHEAKPLKLYVYNT 169 (209)
T ss_dssp TCCTTTEEEEEESSC-CCSSSCHHHHHHHTTTSCEEEEEEET
T ss_pred CCCCCCCEEEECCCE-eCCHHHHHHHHHhCCCCeEEEEEEEC
Confidence 9999 9999999998 99999999999999889999999775
No 28
>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}
Probab=99.70 E-value=4.9e-16 Score=147.67 Aligned_cols=153 Identities=14% Similarity=0.064 Sum_probs=113.7
Q ss_pred eEEEEEEEc--CC--EEEecccccCCCceEEEEEcCCCcEEEEEEEEEc-CCCCEEEEEEeeCCCCCCeee---------
Q 008087 149 SSSSGFAIG--GR--RVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIG-TECDIAMLTVEDDEFWEGVLP--------- 214 (578)
Q Consensus 149 ~~GsGfvI~--~g--~ILT~aHvV~~~~~i~V~~~~~g~~~~a~vv~~d-~~~DlAlLkv~~~~~~~~~~~--------- 214 (578)
...+||++. +| |||||+||+.....+ .+ .| +.|++++.| +..|+||||++.... ..+.
T Consensus 14 ~CTsGf~v~~~~G~~~ilTa~Hc~~~g~~v--~~-~d---~~g~v~~~~~p~~DiAlikl~~~~~--~~~~v~~~g~~~~ 85 (188)
T 2oua_A 14 RCSVGFAATNASGQPGFVTAGHCGSVGTQV--SI-GN---GRGVFERSVFPGNDAAFVRGTSNFT--LTNLVSRYNSGGY 85 (188)
T ss_dssp EEECCEEEECTTCCEEEEECGGGCCTTCEE--EE-TT---EEEEEEEEECSBSCEEEEEEEESCE--EEEEEECGGGCSE
T ss_pred cEecCEEEEeCCCCEEEEECcccCCCCCEE--Ee-cC---ceEEEEeeCCCCCCEEEEEeCCCCc--cccceeecCCcce
Confidence 345799994 77 999999999776654 34 34 889999999 999999999987631 1121
Q ss_pred EEcCC--CCCCCCcEEEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCccceEEccCCeEEEEEec
Q 008087 215 VEFGE--LPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQ 292 (578)
Q Consensus 215 l~l~~--~~~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGPlvn~~G~vVGI~~~ 292 (578)
+.+.. .+.+|+.|..+|++.+ .+.|+|+.+++...........+++++..+.+|+|||||++ +|++|||+++
T Consensus 86 ~~l~~~~~~~vG~~v~~~G~~tG-----~t~G~v~~~~~~v~~~~~~~~~~~~~~~~~~~GDSGgpl~~-~~~~vGi~s~ 159 (188)
T 2oua_A 86 ATVSGSSTAPIGSQVCRSGSTTG-----WYCGTIQARNQTVSYPQGTVHSLTRTSVCAEPGDSGGSFIS-GTQAQGVTSG 159 (188)
T ss_dssp EECCBCCCCCTTCEEEEEETTTE-----EEEEEEEEEEEEEEETTEEEEEEEEESCCCCTTCTTCEEEE-TTEEEEEEEE
T ss_pred EeccCccCCCCCCeEEEEEcCCC-----eEEEEEEEEeeEEEeCCCcEeeeEeeeeecCCCCccceEEE-CCEEEEEEec
Confidence 34543 4567999999999876 57899998877543222223357888988999999999995 7999999998
Q ss_pred cccccccCCceeeecchhHHHHH
Q 008087 293 SLKHEDVENIGYVIPTPVIMHFI 315 (578)
Q Consensus 293 ~~~~~~~~~~~~aiPi~~i~~~l 315 (578)
........+.+|++|++.+++.+
T Consensus 160 ~~~~~~~~~~~~~~pi~~~l~~~ 182 (188)
T 2oua_A 160 GSGNCRTGGTTFYQEVNPMLNSW 182 (188)
T ss_dssp EEEETTTEEEEEEEESHHHHHHT
T ss_pred cCCCCCCCCceEEEEHHHHHHHc
Confidence 54211334579999998877653
No 29
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...
Probab=99.68 E-value=3.3e-16 Score=148.60 Aligned_cols=160 Identities=18% Similarity=0.199 Sum_probs=112.5
Q ss_pred eEEE-EEEEc---CCEEEecccccCCCceEEEEEcCCCcEEEEEEEEEc-CCCCEEEEEEee-C-CCCCCeeeEEcCC--
Q 008087 149 SSSS-GFAIG---GRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIG-TECDIAMLTVED-D-EFWEGVLPVEFGE-- 219 (578)
Q Consensus 149 ~~Gs-GfvI~---~g~ILT~aHvV~~~~~i~V~~~~~g~~~~a~vv~~d-~~~DlAlLkv~~-~-~~~~~~~~l~l~~-- 219 (578)
..|| ||++. ++|||||+||+.+...+.+.. .+... .+++...+ +.+||||||++. + .+...++++.+..
T Consensus 12 ~~ct~Gf~v~~~~~~~ilTaaHcv~~~~~~~v~~-~~~~~-~g~~~~~~~~~~DiAll~l~~~~~~~~~~v~~~~l~~~~ 89 (185)
T 2qa9_E 12 GRCSLGFNVRSGSTYYFLTAGHCTDGATTWWANS-ARTTV-LGTTSGSSFPNNDYGIVRYTNTTIPKDGTVGGQDITSAA 89 (185)
T ss_dssp CEEECCEEEEETTEEEEEECHHHHTTCSEEESST-TSCSE-EEEEEEEECSBSCEEEEEECCSSSCCCCEETTEECCEEC
T ss_pred CcEeccEEEEECCceEEEECcccCCCCCcEEecC-CCceE-eEEEeccccCCCCEEEEEecCCCccccCccceeeeCCcc
Confidence 3677 99995 469999999999988877654 23333 45666777 889999999997 3 2233456677753
Q ss_pred CCCCCCcEEEEeecCCCCcceEEEeEEeceeeeeecC-CceeeeEEEEecCCCCCCccceEEccCCeEEEEEeccccccc
Q 008087 220 LPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVH-GSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHED 298 (578)
Q Consensus 220 ~~~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~-~~~~~~~i~~da~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~ 298 (578)
....|+.+.++|++.+ .+.|+++..+...... ......+++.+..+|+|||||||++. +++|||++.......
T Consensus 90 ~~~~g~~v~~~Gw~~~-----~~~g~l~~~~~~v~~~~~~~~~~~~~~~~cac~GDSGGPlv~~-~~~vGI~s~g~~~~~ 163 (185)
T 2qa9_E 90 NATVGMAVTRRGSTTG-----THSGSVTALNATVNYGGGDVVYGMIRTNVCAEPGDSGGPLYSG-TRAIGLTSGGSGNCS 163 (185)
T ss_dssp CCCTTCEEEEEETTTE-----EEEEEEEEEEEEEECSTTCEEEEEEEESCCCCTTCTTCEEEET-TEEEEEEEEEEEETT
T ss_pred cCCCCCEEEEecCCCc-----eeEeEEEEEEEEEEcCCCCEEeceEEecccCCCCCccceEEEC-CEEEEEEEecCCCCC
Confidence 4567999999999643 4567777665442111 11122357788888999999999986 499999998542212
Q ss_pred cCCceeeecchhHHHHHH
Q 008087 299 VENIGYVIPTPVIMHFIQ 316 (578)
Q Consensus 299 ~~~~~~aiPi~~i~~~l~ 316 (578)
....+++.|++.++.+++
T Consensus 164 ~~~p~vyt~v~~~~~wI~ 181 (185)
T 2qa9_E 164 SGGTTFFQPVTEALSAYG 181 (185)
T ss_dssp TEEEEEEEEHHHHHHHHT
T ss_pred CCCcEEEEEHHHHHHhhC
Confidence 235688999988877763
No 30
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.67 E-value=7.7e-16 Score=146.82 Aligned_cols=147 Identities=14% Similarity=0.133 Sum_probs=108.0
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECC--EEEEEE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDS--KILNFN 427 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g--~~~~~~ 427 (578)
..|++|..|.++|||++ | |++||+|++|||+++.+|.+. .........|+.+.|+|.|++ ....++
T Consensus 34 ~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~----------~~~~~~~~~g~~v~l~v~r~~~~~~~~~~ 103 (196)
T 3gsl_A 34 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS----------AAVEALKEAGSIVRLYVMRRKPPAEKVME 103 (196)
T ss_dssp CCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHH----------HHHHHHHTSCSEEEEEEEEECCCCEEEEE
T ss_pred CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHH----------HHHHHHHhCCCcEEEEEEecCCCccccEE
Confidence 45899999999999999 9 999999999999999999763 223333346899999999987 455566
Q ss_pred EEecccccccCCCCCCCCCCceeeccEEEeehHHHHHHhchhhhhhhhhccccccccccccCCCceEEEEee----cCCc
Q 008087 428 ITLATHRRLIPSHNKGRPPSYYIIAGFVFSRCLYLISVLSMERIMNMKLRSSFWTSSCIQCHNCQMSSLLWC----LRSP 503 (578)
Q Consensus 428 v~l~~~~~~~~~~~~~~~p~~~~~~Gl~~~~~p~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~vvvs~v----~A~~ 503 (578)
+.+..... -.|+.+.... + ........++++..+ +|++
T Consensus 104 v~l~~~~~---------------~lG~~~~~~~------~-----------------~~~~~~~~gv~V~~V~~gs~A~~ 145 (196)
T 3gsl_A 104 IKLIKGPK---------------GLGFSIAGGV------G-----------------NQHIPGDNSIYVTKIIEGGAAHK 145 (196)
T ss_dssp EEEEEBTT---------------BSCEEEEESB------T-----------------SCSBTTBCCEEEEEECTTSHHHH
T ss_pred EEEecCCC---------------CceEEEEccC------C-----------------CcCCCCCCCEEEEEECCCChHHh
Confidence 66544321 1244333210 0 000011235666654 7999
Q ss_pred CC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 504 LC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 504 aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
+| |++||+|++|||++|.+ |.++.+++++. ++.+.|++.|++.
T Consensus 146 aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~~ 191 (196)
T 3gsl_A 146 DGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT-YDVVYLKVAKPSN 191 (196)
T ss_dssp HCCCCTTCEEEEETTEECSSCBHHHHHHHHHSC-CEEEEEEEEEESC
T ss_pred cCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcC-CCeEEEEEeCCCC
Confidence 99 99999999999999998 99999999864 7889999988764
No 31
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}
Probab=99.66 E-value=1.2e-15 Score=144.97 Aligned_cols=150 Identities=17% Similarity=0.188 Sum_probs=108.8
Q ss_pred EEEEEEcCCEEEecccccCCCceEEEEEcCCCcEEEEEEEEEc-CCCCEEEEEEeeCCC-CCCee-----eEEcCC--CC
Q 008087 151 SSGFAIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIG-TECDIAMLTVEDDEF-WEGVL-----PVEFGE--LP 221 (578)
Q Consensus 151 GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~g~~~~a~vv~~d-~~~DlAlLkv~~~~~-~~~~~-----~l~l~~--~~ 221 (578)
-+||++.+ +||||+||+..+..+. + .+ +++++.| +..|+||||++.... ...+. ++.+.. ..
T Consensus 18 T~Gf~~~~-~ilTa~Hc~~~~~~v~--~-~d-----g~v~~~~~~~~DiAlikl~~~~~~~~~v~~~~g~~v~l~~s~~~ 88 (189)
T 2ea3_A 18 SIGFAVNG-GFITAGHCGRTGATTA--N-PT-----GTFAGSSFPGNDYAFVRTGAGVNLLAQVNNYSGGRVQVAGHTAA 88 (189)
T ss_dssp ECCEEETT-EEEECGGGCCTTCEEE--T-TT-----EEEEEEECSBSCEEEEEECTTCEEEEEEECSSSCEEECCBCCCC
T ss_pred ccCEEccC-eEEEchhcCCCCCEEE--e-CC-----cEEEeeCCCCCCEEEEEECCCCccccceEecCCceeecCCCcCC
Confidence 35899876 9999999999877643 3 23 7888998 999999999987531 11111 344654 44
Q ss_pred CCCCcEEEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCccceEEccCCeEEEEEeccccccccCC
Q 008087 222 ALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVEN 301 (578)
Q Consensus 222 ~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~~~~ 301 (578)
.+|+.|..+|++.+ .+.|+|+.+++...........+++++..+++|+|||||++ +|++|||++.....-...+
T Consensus 89 ~vG~~v~~~G~~tG-----~t~G~Vs~~~~~v~~~~~~~~~~~~~~~~~~~GDSGgpl~~-~~~~vGi~s~~~~~c~~~~ 162 (189)
T 2ea3_A 89 PVGSAVCRSGSTTG-----WHCGTITALNSSVTYPEGTVRGLIRTTVCAEPGDSGGSLLA-GNQAQGVTSGGSGNCRTGG 162 (189)
T ss_dssp CTTCEEEEEETTTE-----EEEEEEEEEEEEEEETTEEEEEEEEESCCCCTTCTTCEEEE-TTEEEEEEEEEEEETTTEE
T ss_pred CCCCEEEEEEeCCc-----cEEEEEEecceEEEeCCccCcceEEeeeeccCCCccCeEEE-CCEEEEEEeecCCCCCCCC
Confidence 67999999999865 57889988876542222222347888999999999999997 7999999987532112346
Q ss_pred ceeeecchhHHHHH
Q 008087 302 IGYVIPTPVIMHFI 315 (578)
Q Consensus 302 ~~~aiPi~~i~~~l 315 (578)
.+|++|++.++..+
T Consensus 163 ~~~~~pi~~~l~~~ 176 (189)
T 2ea3_A 163 TTFFQPVNPILQAY 176 (189)
T ss_dssp EEEEEEHHHHHHHH
T ss_pred cEEEEEHHHHHHHC
Confidence 88999988766554
No 32
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca}
Probab=99.62 E-value=4e-15 Score=140.99 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=108.6
Q ss_pred EEEEEc---CCEEEecccccCCCceEEEEEcCCCcEEEEEEEEEc-CCCCEEEEEEeeCCC-CCCee-----eEEcCC--
Q 008087 152 SGFAIG---GRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIG-TECDIAMLTVEDDEF-WEGVL-----PVEFGE-- 219 (578)
Q Consensus 152 sGfvI~---~g~ILT~aHvV~~~~~i~V~~~~~g~~~~a~vv~~d-~~~DlAlLkv~~~~~-~~~~~-----~l~l~~-- 219 (578)
+||++. .+|||||+||+..+..+.+ +.++++..| +..|+||||++.... ...+. ++.+..
T Consensus 18 ~Gf~v~~~~~~~ilTa~Hc~~~g~~v~~--------~~g~v~~~~~~~~D~Alikl~~~~~~~~~v~~~~g~~~~i~~~~ 89 (186)
T 2pfe_A 18 IGFSVRQGSQTGFATAGHCGSTGTRVSS--------PSGTVAGSYFPGRDMGWVRITSADTVTPLVNRYNGGTVTVTGSQ 89 (186)
T ss_dssp CCEEEEETTEEEEEECGGGCCTTCEEBT--------TTEEEEEEECSBSCEEEEEECTTSEEEEEEECSSSCEEECCBCC
T ss_pred eeEEEEcCCeeEEEEChhhCCCCCEEEE--------eeEEEEecCCCCCCEEEEEeCCCcccccceeccCCceEecCCCC
Confidence 499995 3699999999998876654 467888887 999999999987521 00111 233432
Q ss_pred CCCCCCcEEEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCccceEEccCCeEEEEEecccccccc
Q 008087 220 LPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDV 299 (578)
Q Consensus 220 ~~~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~~ 299 (578)
.+.+|+.|..+|++.+ .+.|+|+.+++...........+++++..+.+|+|||||++ +|+++||++.....-..
T Consensus 90 ~~~vG~~vc~~G~~tG-----~t~G~vs~~~~tv~~~~~~~~~~~~~~~c~~~GDSGgpl~~-~~~~vGi~s~g~~~c~~ 163 (186)
T 2pfe_A 90 EAATGSSVCRSGATTG-----WRCGTIQSKNQTVRYAEGTVTGLTRTTACAEGGDSGGPWLT-GSQAQGVTSGGTGDCRS 163 (186)
T ss_dssp CCCTTCEEEEEETTTE-----EEEEEEEEEEEEEEETTEEEEEEEEESCCCCTTCTTCEEEE-TTEEEEEEEEEEEETTT
T ss_pred CCCCCCeEEEEEeCCc-----eEEEEEEEEeeeEEeCCceEeceEeccEEecCCCccCeEEE-CCEEEEEEeecCCCCCC
Confidence 4567999999998866 67899998877632222222356788888889999999996 78999999985321123
Q ss_pred CCceeeecchhHHHHH
Q 008087 300 ENIGYVIPTPVIMHFI 315 (578)
Q Consensus 300 ~~~~~aiPi~~i~~~l 315 (578)
.+.+|++|++.+++.+
T Consensus 164 ~~~~~~~pi~~~l~~~ 179 (186)
T 2pfe_A 164 GGITFFQPINPLLSYF 179 (186)
T ss_dssp EEEEEEEEHHHHHHHH
T ss_pred CCcEEEEEHHHHHHHC
Confidence 4578999988876654
No 33
>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed O HOLE, transferase; 2.00A {Equine arteritis virus} SCOP: b.47.1.3
Probab=99.62 E-value=9.2e-16 Score=140.65 Aligned_cols=116 Identities=21% Similarity=0.196 Sum_probs=89.8
Q ss_pred ceEEEEEEEc-CCEEEecccccCCCceEEEEEcCCCcEEEEEEEEEcCCCCEEEEEEeeCCCCCCeeeEEcCCCCCCCCc
Q 008087 148 SSSSSGFAIG-GRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWEGVLPVEFGELPALQDA 226 (578)
Q Consensus 148 ~~~GsGfvI~-~g~ILT~aHvV~~~~~i~V~~~~~g~~~~a~vv~~d~~~DlAlLkv~~~~~~~~~~~l~l~~~~~~g~~ 226 (578)
.++||||+|+ .++||||+||+.++....|++ ++..+. +.+++..|||++++........+++++|++ +.+|+.
T Consensus 14 ~G~GsgF~i~~~g~vVTA~HVv~~~~~~~V~~--~G~~~~---Vgf~~~~DlA~l~v~~~~~~g~~P~l~las-p~vG~a 87 (198)
T 1mbm_A 14 YGTGSVWTRNNEVVVLTASHVVGRANMATLKI--GDAMLT---LTFKKNGDFAEAVTTQSELPGNWPQLHFAQ-PTTGPA 87 (198)
T ss_dssp EEEEEEEEETTEEEEEEEHHHHCTTCEEEEEE--TTEEEE---EECEEETTEEEEEECTTTSCSCCCBCCBCC-CCSEEE
T ss_pred CCccceEEECCCeEEEEeeeEEccCceEEEEE--CCEEEE---eecccCCcEEEEEeeccCCCCCCcccccCC-Ccccce
Confidence 5689999998 789999999999999999998 888887 778899999999994222113567888865 677772
Q ss_pred EEEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCccceEEccCCeEEEEEec
Q 008087 227 VTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQ 292 (578)
Q Consensus 227 V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGPlvn~~G~vVGI~~~ 292 (578)
-. ..+.|.++.+... ..+++++ ++||||||++|.+ +||||+++
T Consensus 88 ~~-----------~~~tG~~~~l~g~--------~g~l~~t---~PGDSGsPVl~~~-~vIGV~T~ 130 (198)
T 1mbm_A 88 SW-----------CTATGDEEGLLSG--------EVCLAWT---TSGDSGSAVVQGD-AVVGVHTG 130 (198)
T ss_dssp EE-----------EETTEEEEEEECS--------SCEECCC---CGGGTTCEEEETT-EEEEEEEE
T ss_pred EE-----------eeccccEEEEecC--------CceeEcC---CCCCCCCccccCC-eEEEEEec
Confidence 22 3445666655411 1356777 7999999999998 99999998
No 34
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.61 E-value=2.8e-15 Score=143.86 Aligned_cols=146 Identities=14% Similarity=0.142 Sum_probs=106.9
Q ss_pred CCCcEEEEeCCCCcccC--CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE------
Q 008087 352 QKGVRIRRVDPTAPESE--VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI------ 423 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~--GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~------ 423 (578)
..|++|..|.++|||++ ||++||+|++|||+++.+|.... +..++. ..|+++.|+|.|+++.
T Consensus 32 ~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~--------~~~~~~--~~g~~v~l~v~R~~~~~~~~g~ 101 (200)
T 2qt5_A 32 DGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDE--------IISLLK--NVGERVVLEVEYELPPVSIQGS 101 (200)
T ss_dssp SSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHH--------HHHHHH--TCCSEEEEEEEEECCCCCCCCS
T ss_pred CCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHH--hCCCeEEEEEeccCCCcccCCC
Confidence 45799999999999986 89999999999999999984311 223332 3588999999997632
Q ss_pred ----EEEEEEecccccccCCCCCCCCCCceeeccEEEeeh-HHHHHHhchhhhhhhhhccccccccccccCCCceEEEEe
Q 008087 424 ----LNFNITLATHRRLIPSHNKGRPPSYYIIAGFVFSRC-LYLISVLSMERIMNMKLRSSFWTSSCIQCHNCQMSSLLW 498 (578)
Q Consensus 424 ----~~~~v~l~~~~~~~~~~~~~~~p~~~~~~Gl~~~~~-p~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~vvvs~ 498 (578)
.++.+++.... . ..|+.+... ... .....++++..
T Consensus 102 ~~~~~~~~v~l~~~~------------~---~lG~~l~~g~~~~-------------------------~~~~~g~~V~~ 141 (200)
T 2qt5_A 102 SVMFRTVEVTLHKEG------------N---TFGFVIRGGAHDD-------------------------RNKSRPVVITC 141 (200)
T ss_dssp SEEEEEEEEEEECBT------------T---BCSEEEEEECCSS-------------------------TTTCEEEEEEE
T ss_pred ccceeEEEEEEecCC------------C---CeEEEEECCCCCC-------------------------ccCCCCEEEEE
Confidence 55555553210 0 125544321 000 00123566665
Q ss_pred ----ecCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCeEE
Q 008087 499 ----CLRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQVV 548 (578)
Q Consensus 499 ----v~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~~~ 548 (578)
++|+++| |++||+|++|||++|. +++++.++|++ +++.+.|++.|++..
T Consensus 142 v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~ 197 (200)
T 2qt5_A 142 VRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQEATLLIEYDVSV 197 (200)
T ss_dssp ECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-TCSEEEEEEEEEEEC
T ss_pred ECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCcc
Confidence 4799999 9999999999999999 99999999998 788999999998764
No 35
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.60 E-value=3.2e-15 Score=143.07 Aligned_cols=143 Identities=13% Similarity=0.219 Sum_probs=106.7
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeC--CCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEE---
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIA--NDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKIL--- 424 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~--~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~--- 424 (578)
..+++|..|.++|||++ | |++||+|++|||+++. +|.+ +..++.....|+++.|+|.|+|+..
T Consensus 35 ~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~----------~~~~l~~~~~g~~v~l~v~R~~~~~~~~ 104 (196)
T 1p1d_A 35 SSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEE----------ANQLLRDSSITSKVTLEIEFDVAESVIP 104 (196)
T ss_dssp SCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHH----------HHHHHHTCCSSSEEEEEEEECSCSCCBC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH----------HHHHHHhCCCCCeEEEEEEecCCCCCCC
Confidence 35799999999999999 9 9999999999999999 4555 4566766666899999999998632
Q ss_pred ---EEEEEecccccccCCCCCCCCCCceeeccEEEeeh-HHHHHHhchhhhhhhhhccccccccccccCCCceEEEEe--
Q 008087 425 ---NFNITLATHRRLIPSHNKGRPPSYYIIAGFVFSRC-LYLISVLSMERIMNMKLRSSFWTSSCIQCHNCQMSSLLW-- 498 (578)
Q Consensus 425 ---~~~v~l~~~~~~~~~~~~~~~p~~~~~~Gl~~~~~-p~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~vvvs~-- 498 (578)
...+.+... . . ...||.+... .. ....++++..
T Consensus 105 ~~~~~~v~l~~~----~--~--------~~lG~~~~~~~~~---------------------------~~~~gv~V~~V~ 143 (196)
T 1p1d_A 105 SSGTFHVKLPKK----H--S--------VELGITISSPSSR---------------------------KPGDPLVISDIK 143 (196)
T ss_dssp CSSCEEEEECCC----S--S--------CCCCCEEECSCSS---------------------------STTCCCEEEECC
T ss_pred CCCcEEEEecCC----C--C--------CCcCEEEECCCCC---------------------------CCCCCEEEEEEC
Confidence 122333210 0 0 0125555432 10 0012455554
Q ss_pred --ecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCe
Q 008087 499 --CLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 499 --v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
++|+++| |++||+|++|||++|.+ +++|.++|++. ++.+.|++.|++
T Consensus 144 ~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~ 195 (196)
T 1p1d_A 144 KGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC-EDLVKLKIRKDE 195 (196)
T ss_dssp SSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHC-TTCEEEEEECCC
T ss_pred CCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEeCC
Confidence 5799999 99999999999999998 99999999988 889999999975
No 36
>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A
Probab=99.59 E-value=5.5e-15 Score=139.61 Aligned_cols=152 Identities=16% Similarity=0.180 Sum_probs=102.1
Q ss_pred eEEE-EEEEc---CCEEEecccccCCCceEEEEEcCCCcEEEEEEEEEcCCCCEEEEEEeeCC-CCCCeeeE-----EcC
Q 008087 149 SSSS-GFAIG---GRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDE-FWEGVLPV-----EFG 218 (578)
Q Consensus 149 ~~Gs-GfvI~---~g~ILT~aHvV~~~~~i~V~~~~~g~~~~a~vv~~d~~~DlAlLkv~~~~-~~~~~~~l-----~l~ 218 (578)
..|| ||+|. ++|||||+||+.+...+.+-.. + -...+.+||||||++.+. +...+.++ .+.
T Consensus 12 ~~ct~G~~v~~~~~~~vlTaaHc~~~~~~~~~G~~-~--------~~~~~~~DiAlikl~~~~~~~~~v~~i~~~~~~~~ 82 (181)
T 2sga_A 12 SRCSLGFNVSVNGVAHALTAGHCTNISASWSIGTR-T--------GTSFPNNDYGIIRHSNPAAADGRVYLYNGSYQDIT 82 (181)
T ss_dssp EEEECCEEEEETTEEEEEECHHHHTTCSEETTEEE-E--------EEECSBSCEEEEEESCGGGCCCEEECSSSCEEECC
T ss_pred CcEeccEEEEECCceEEEECcccCCCCCceeecce-e--------CCcCCCCCEEEEEccCCCcccceEEecCCcceeec
Confidence 4677 99996 4699999999987665432221 1 123367899999998752 11233332 222
Q ss_pred --CCCCCCCcEEEEeecCCCCcceEEEeEEeceeeeeecC-CceeeeEEEEecCCCCCCccceEEccCCeEEEEEecccc
Q 008087 219 --ELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVH-GSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLK 295 (578)
Q Consensus 219 --~~~~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~-~~~~~~~i~~da~i~~G~SGGPlvn~~G~vVGI~~~~~~ 295 (578)
..+..|+.|.++|++.+ .+.|.++..+...... ......+++++..+++|||||||++.+ ++|||+++...
T Consensus 83 ~~~~~~~G~~v~~~G~~~~-----~t~G~v~~~~~~v~~~~~~~~~~~i~~~~c~~~GDSGGPlv~~~-~~vGI~s~g~~ 156 (181)
T 2sga_A 83 TAGNAFVGQAVQRSGSTTG-----LRSGSVTGLNATVNYGSSGIVYGMIQTNVCAQPGDSGGSLFAGS-TALGLTSGGSG 156 (181)
T ss_dssp EECCCCTTCEEEEEETTTE-----EEEEEEEEEEEEEECGGGCEEEEEEEESCCCCTTCTTCEEEETT-EEEEEEEEEEE
T ss_pred ccccCCCCCEEEEeecCCC-----ccEEEEEEeEEEEECCCCCEEeeeEecccccCCCCCCCEEEECC-EEEEEEEeeCC
Confidence 34567999999998754 4567777766542111 111234678888889999999999865 99999998542
Q ss_pred ccccCCceeeecchhHHHHH
Q 008087 296 HEDVENIGYVIPTPVIMHFI 315 (578)
Q Consensus 296 ~~~~~~~~~aiPi~~i~~~l 315 (578)
.-...+.++++|++.++..|
T Consensus 157 ~~~~~~~~v~~~v~~~~~~l 176 (181)
T 2sga_A 157 NCRTGGTTFYQPVTEALSAY 176 (181)
T ss_dssp ETTTEEEEEEEEHHHHHHHH
T ss_pred CCcCCCceEEEEHHHHHHhc
Confidence 11223578999998877665
No 37
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.54 E-value=3.2e-14 Score=136.95 Aligned_cols=139 Identities=18% Similarity=0.188 Sum_probs=97.7
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCE-EEEEEEECCEEE--EEE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDS-AAVKVLRDSKIL--NFN 427 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~-v~l~V~R~g~~~--~~~ 427 (578)
.|++|..|.++|||++ | |++||+|++|||++|.+|..-.. .+..++ ...++. +.|+|+|+++.. +++
T Consensus 45 ~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~------~~~~~~--~~~~~~~v~l~v~R~~~~~~~~~~ 116 (206)
T 3r0h_A 45 TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTL------KVHQLF--HTTYEKAVTLTVFRADPPELEKFN 116 (206)
T ss_dssp SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHH------HHHHHH--HSCCSSEEEEEEECCSSCCEEEEE
T ss_pred CCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHH------HHHHHH--HhcCCCceEEEEEecccCCCcEEE
Confidence 4899999999999999 8 99999999999999999432110 011222 234555 999999988654 444
Q ss_pred EEecccccccCCCCCCCCCCceeeccEEEeehHHHHHHhchhhhhhhhhccccccccccccCCCceEEEEe----ecCCc
Q 008087 428 ITLATHRRLIPSHNKGRPPSYYIIAGFVFSRCLYLISVLSMERIMNMKLRSSFWTSSCIQCHNCQMSSLLW----CLRSP 503 (578)
Q Consensus 428 v~l~~~~~~~~~~~~~~~p~~~~~~Gl~~~~~p~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~vvvs~----v~A~~ 503 (578)
+.+..... . -.||.+... ..++++.. ++|++
T Consensus 117 v~l~~~~~------~--------~lG~~~~~~-------------------------------~~gv~V~~V~~gs~A~~ 151 (206)
T 3r0h_A 117 VDLMKKAG------K--------ELGLSLSPN-------------------------------EIGCTIADLIQGQYPEI 151 (206)
T ss_dssp EEEECCTT------C--------CCCEEEEEC-------------------------------SSCEEEEEECTTSCHHH
T ss_pred EEEecCCC------C--------ccCeEEEcC-------------------------------CceEEEEEECCCChHHH
Confidence 44432110 0 124433210 12455554 47889
Q ss_pred CC-CCCCCEEEEeCCeecCCH--HHHHHHHHhcCCCeEEEEEecC
Q 008087 504 LC-LNCFNKVLAFNGNPVKNL--KSLANMVENCDDEFLKFDLEYD 545 (578)
Q Consensus 504 aG-l~~GD~I~~VNG~~V~~~--~~l~~~l~~~~~~~v~l~v~R~ 545 (578)
+| |++||+|++|||++|.++ .++.+++++ .++.+.|+|.|.
T Consensus 152 aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~L~V~R~ 195 (206)
T 3r0h_A 152 DSKLQRGDIITKFNGDALEGLPFQVCYALFKG-ANGKVSMEVTRP 195 (206)
T ss_dssp HHHCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEEEE
T ss_pred cCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 99 999999999999999965 888999976 466889999874
No 38
>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Probab=99.50 E-value=3.9e-13 Score=131.51 Aligned_cols=184 Identities=17% Similarity=0.220 Sum_probs=114.2
Q ss_pred CCCCCccccCCC---cceEEEEEEEcCCEEEecccccCCCceEEEEEcCC--------CcEEEEEEEEEcC-------CC
Q 008087 135 PNFSLPWQRKRQ---YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGS--------DTKYLATVLAIGT-------EC 196 (578)
Q Consensus 135 ~~~~~p~~~~~~---~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~--------g~~~~a~vv~~d~-------~~ 196 (578)
....+||+.... ....|+|.+|++.||||+|||+.....+.|++... ...+..+.+..++ .+
T Consensus 8 ~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~ 87 (228)
T 1fxy_A 8 KDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDF 87 (228)
T ss_dssp CTTSCTTEEEEECTTSCEEEEEEECSSSEEEECGGGTTSCSSCEEEEECSCTTTCCCCEEEEEEEEEEECTTCBTTTTBT
T ss_pred CCCCcCcEEEEEcCCCCeeEEEEEeeCCEEEECHHHCCCCCcEEEEECccCccccCCCcEEEEEEEEEECCCCCCCCCcC
Confidence 344567765432 23579999999999999999997666677777321 1233444444444 46
Q ss_pred CEEEEEEeeC-CCCCCeeeEEcCCC-CCCCCcEEEEeecCCCCc--------ceEEEeEEeceeeeeecCCceeeeEEEE
Q 008087 197 DIAMLTVEDD-EFWEGVLPVEFGEL-PALQDAVTVVGYPIGGDT--------ISVTSGVVSRIEILSYVHGSTELLGLQI 266 (578)
Q Consensus 197 DlAlLkv~~~-~~~~~~~~l~l~~~-~~~g~~V~~iG~p~g~~~--------~sv~~G~Is~~~~~~~~~~~~~~~~i~~ 266 (578)
|||||+++.+ .+...+.|+.|... ...|+.+++.||...... ..+...+++...+...........+++.
T Consensus 88 DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~Ca 167 (228)
T 1fxy_A 88 DIAVLRLKTPITFRMNVAPASLPTAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCV 167 (228)
T ss_dssp CCEEEEESSCCCCBTTBCCCCCCSSCCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHSTTTCCTTEEEE
T ss_pred cEEEEEECCcccCCCceeccCCCCCCCCCCCEEEEEecCccCCCCCCCCccceEEEEEEeCHHHhHhhcCCCCCCCEEEe
Confidence 9999999976 34456788888753 346889999998643111 1122233332222211111111234554
Q ss_pred e-----cCCCCCCccceEEccCCeEEEEEeccccccccCCceeeecchhHHHHHHHHH
Q 008087 267 D-----AAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 267 d-----a~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
. ...|.|+|||||+. +|+++||++....-......+...-+...+.++++..
T Consensus 168 ~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~ 224 (228)
T 1fxy_A 168 GFLEGGKDSCQGDSGGPVVC-NGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTI 224 (228)
T ss_dssp SCTTCSCBCCTTCTTCEEEE-TTEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHH
T ss_pred ccCCCCCccccCccccceEE-CCEEEEEEEECCCCCCCCCCEEEEEhHHHHHHHHHHH
Confidence 2 35789999999997 5899999987543212233456677777777776654
No 39
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=99.50 E-value=1.8e-13 Score=127.34 Aligned_cols=145 Identities=16% Similarity=0.192 Sum_probs=99.4
Q ss_pred cccCCcccccccChhhhhhhccccCCCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHh
Q 008087 327 FPLLGVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVS 405 (578)
Q Consensus 327 ~~~lGi~~~~~~~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~ 405 (578)
++|||+.++.. ..|++|..|.++|||++ ||++||+|++|||+++.+|.+- +...+.
T Consensus 15 ~~~lG~~~~~~--------------~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~---------~~~~~~ 71 (166)
T 1w9e_A 15 DGKIGLRLKSI--------------DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD---------KAHKVL 71 (166)
T ss_dssp TSCCSEEEEEE--------------TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHH---------HHHHHH
T ss_pred CCcEeEEEEeC--------------CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHH---------HHHHHH
Confidence 68999998764 25899999999999999 9999999999999999999761 112333
Q ss_pred ccCCCCEEEEEEEECCEEEEEEEEecccccccCCCCCCCCCCceeeccEEEeehHHHHHHhchhhhhhhhhccccccccc
Q 008087 406 QKYTGDSAAVKVLRDSKILNFNITLATHRRLIPSHNKGRPPSYYIIAGFVFSRCLYLISVLSMERIMNMKLRSSFWTSSC 485 (578)
Q Consensus 406 ~~~~g~~v~l~V~R~g~~~~~~v~l~~~~~~~~~~~~~~~p~~~~~~Gl~~~~~p~~~~~~g~~~~~~~~~l~~~~~~~~ 485 (578)
....|+++.|+|.|+++.++++++.... . ..||.+.. | .
T Consensus 72 ~~~~~~~v~l~vr~~~~~~~v~l~~~~~--------~--------~lG~~~~~--------g------------~----- 110 (166)
T 1w9e_A 72 KQAFGEKITMTIRDRPFERTITMHKDST--------G--------HVGFIFKN--------G------------K----- 110 (166)
T ss_dssp HHCCSSEEEEEEECCTTCEEEEEECCTT--------S--------CCSEEEET--------T------------E-----
T ss_pred hcCCCCEEEEEEEcCCCcEEEEEecCCC--------C--------cEeEEEeC--------C------------E-----
Confidence 3446789999994444777777653110 0 11332210 0 0
Q ss_pred cccCCCceEEEEeecCCcCCCCCCCEEEEeCCeecCCHHHH--HHHHHhcCCCeEEEEE
Q 008087 486 IQCHNCQMSSLLWCLRSPLCLNCFNKVLAFNGNPVKNLKSL--ANMVENCDDEFLKFDL 542 (578)
Q Consensus 486 ~~~~~~~~vvvs~v~A~~aGl~~GD~I~~VNG~~V~~~~~l--~~~l~~~~~~~v~l~v 542 (578)
-.-+..+++|+++||+.||+|++|||++|.++..- .-.+.. .++.+.+.+
T Consensus 111 ------v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~~~~v~~~v~r-~g~~~~l~v 162 (166)
T 1w9e_A 111 ------ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILST-SGTVVTITI 162 (166)
T ss_dssp ------EEEECTTSHHHHTTCCSSEEEEEETTEECTTCCHHHHHHHHHH-SCSEEEEEE
T ss_pred ------EEEEccCCHHHHcCCCCCCEEEEECCEECCCCChHHHHHHHhh-CCCEEEEEE
Confidence 00123456899999999999999999999988543 223333 355555544
No 40
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2
Probab=99.48 E-value=1.1e-12 Score=128.81 Aligned_cols=183 Identities=16% Similarity=0.179 Sum_probs=113.8
Q ss_pred CCCCCccccCCCcceEEEEEEEcCCEEEecccccCCCceEEEEEcCC--------CcEEEEEEEEEcC------------
Q 008087 135 PNFSLPWQRKRQYSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGS--------DTKYLATVLAIGT------------ 194 (578)
Q Consensus 135 ~~~~~p~~~~~~~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~--------g~~~~a~vv~~d~------------ 194 (578)
....+||+........|+|.+|++.||||+|||+. ..+.|.+... ...+..+-+..++
T Consensus 8 ~~~~~Pw~v~l~~~~~CgGsLIs~~~VLTAAHC~~--~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~~ 85 (235)
T 1ton_A 8 EKNSQPWQVAVINEYLCGGVLIDPSWVITAAHCYS--NNYQVLLGRNNLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTE 85 (235)
T ss_dssp CTTSCTTEEEEESSSEEEEEEEETTEEEECGGGCC--SCCEEEESCSBTTSCCTTCEEECEEEEEECTTCCCC-------
T ss_pred CCCCcCcEEEEccCCeEEEEEecCCEEEEcHHhCC--CCcEEEeCcccccCCCCcceEEEEEEEEeCCCCcccccccccc
Confidence 34466777654333689999999999999999995 4455665321 1223333333333
Q ss_pred ------CCCEEEEEEeeC-CCCCCeeeEEcCCC-CCCCCcEEEEeecCCCC--------cceEEEeEEeceeeeeecCCc
Q 008087 195 ------ECDIAMLTVEDD-EFWEGVLPVEFGEL-PALQDAVTVVGYPIGGD--------TISVTSGVVSRIEILSYVHGS 258 (578)
Q Consensus 195 ------~~DlAlLkv~~~-~~~~~~~~l~l~~~-~~~g~~V~~iG~p~g~~--------~~sv~~G~Is~~~~~~~~~~~ 258 (578)
.+|||||+++.+ .+...+.|+.|... ...|+.+++.||..... ...+..-+++...+.......
T Consensus 86 ~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~ 165 (235)
T 1ton_A 86 QPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKDN 165 (235)
T ss_dssp -CCCCSTTCCEEEEESSCCCCCSSCCCCCCCCSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECGGGCGGGGSTT
T ss_pred cccCCCcCCEEEEEcCCccccCCcceeeeCCCCCCCCCCEEEEEecCCCCCCCCccCccceEEEEEEeCHHHHHHHhcCc
Confidence 359999999976 34456788888753 35689999999864321 112334444443333221111
Q ss_pred eeeeEEEEe-----cCCCCCCccceEEccCCeEEEEEecccc-ccccCCceeeecchhHHHHHHHHHH
Q 008087 259 TELLGLQID-----AAINSGNSGGPAFNDKGKCVGIAFQSLK-HEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 259 ~~~~~i~~d-----a~i~~G~SGGPlvn~~G~vVGI~~~~~~-~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
....+++.. ...|.|+|||||+. +|.++||++.... -......+...-+...+.++++..+
T Consensus 166 ~~~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~ 232 (235)
T 1ton_A 166 VTDVMLCAGEMEGGKDTCAGDSGGPLIC-DGVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMK 232 (235)
T ss_dssp GGGGEEEEECTTCSCBCCTTCTTCEEEE-TTEEEEEECCCCSSCSCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred CCCCeEeeccCCCCCcCCCCCCccccEE-CCEEEEEEeeCCCCCCCCCCCeEEEEHHHHHHHHHHHHc
Confidence 122345543 35789999999998 6899999987421 1111234567777777887777543
No 41
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*
Probab=99.48 E-value=4.2e-13 Score=130.88 Aligned_cols=181 Identities=17% Similarity=0.194 Sum_probs=113.3
Q ss_pred CCCccccCCC--cceEEEEEEEcCCEEEecccccCCC--ceEEEEEcC-----CCcEEEEEEEEEcCC-----CCEEEEE
Q 008087 137 FSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHY--TQVKLKKRG-----SDTKYLATVLAIGTE-----CDIAMLT 202 (578)
Q Consensus 137 ~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~--~~i~V~~~~-----~g~~~~a~vv~~d~~-----~DlAlLk 202 (578)
..+||+.... ....|+|.+|++.||||+|||+.+. ..+.|.+.. ++..+..+-+..++. +|||||+
T Consensus 10 ~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~v~~i~~hp~y~~~~~DiALl~ 89 (224)
T 1pq7_A 10 GDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVRVHPSYSGNNNDLAILK 89 (224)
T ss_dssp TSSTTEEEEEETTEEEEEEEEEETTEEEECHHHHTTSCGGGEEEEESCSBSSSSSEEECEEEEEECTTCBTTBTCCEEEE
T ss_pred CCcCeEEEEEECCCeEEEEEEecCCEEEEcHHccCCCCCCceEEEeCcceecCCCEEEEEEEEEECCCCCCCCCCEEEEE
Confidence 4456655432 2357999999999999999999853 457777732 234455555666664 5999999
Q ss_pred EeeC-CCCCCeeeEEcCC---CCCCCCcEEEEeecCCCC--------cceEEEeEEeceeeeeecC-CceeeeEEEEe--
Q 008087 203 VEDD-EFWEGVLPVEFGE---LPALQDAVTVVGYPIGGD--------TISVTSGVVSRIEILSYVH-GSTELLGLQID-- 267 (578)
Q Consensus 203 v~~~-~~~~~~~~l~l~~---~~~~g~~V~~iG~p~g~~--------~~sv~~G~Is~~~~~~~~~-~~~~~~~i~~d-- 267 (578)
++.+ .+...+.|+.|.. ....|+.++++||..... ...+...+++...+..... ......+++..
T Consensus 90 L~~~~~~~~~v~picL~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~ 169 (224)
T 1pq7_A 90 LSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVS 169 (224)
T ss_dssp ESSCCCCBTTBCCCCBCCTTCCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEECHHHHHHHHCTTTSCTTEEEECCT
T ss_pred eCCCCcCCCcccceecCCcccCCCCCCEEEEEecCCcCCCCCcccceeeEeEEEEEcHHHhhHhhcCCCCCCCeEEeecC
Confidence 9976 3344678888873 234588999999864321 1123333444332221111 11112345542
Q ss_pred ---cCCCCCCccceEEccCCeEEEEEeccccccccCCceeeecchhHHHHHHH
Q 008087 268 ---AAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQD 317 (578)
Q Consensus 268 ---a~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~ 317 (578)
...|.|+|||||+..+|.++||++....-......+....+...+.++++
T Consensus 170 ~~~~~~C~GDSGgPL~~~~g~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~ 222 (224)
T 1pq7_A 170 SGGKDSCQGDSGGPIVDSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFIDT 222 (224)
T ss_dssp TCCCBCCTTCTTCEEECTTCCEEEEEEECSSSSCTTCCEEEEETTTSHHHHHH
T ss_pred CCCCCCCcCCCCcceECcCCeEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHh
Confidence 36789999999998789999999875422111234556666666666654
No 42
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A
Probab=99.47 E-value=9.8e-13 Score=128.13 Aligned_cols=182 Identities=15% Similarity=0.157 Sum_probs=112.3
Q ss_pred CCCCCccccCCC-cceEEEEEEEcCCEEEecccccCCCceEEEEEcC--------CCcEEEEEEEEEcC-------CCCE
Q 008087 135 PNFSLPWQRKRQ-YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRG--------SDTKYLATVLAIGT-------ECDI 198 (578)
Q Consensus 135 ~~~~~p~~~~~~-~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~--------~g~~~~a~vv~~d~-------~~Dl 198 (578)
....+||+.... ....|+|.+|++.||||+|||+.. .+.|++.. ..+.+..+-+..++ .+||
T Consensus 8 ~~~~~Pw~v~l~~~~~~CgGsLIs~~~VLTAAHC~~~--~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DI 85 (222)
T 1hj8_A 8 KAYSQPHQVSLNSGYHFCGGSLVNENWVVSAAHCYKS--RVEVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDI 85 (222)
T ss_dssp CTTSCTTEEEEESSSEEEEEEEEETTEEEECGGGCCS--SCEEEESCSBTTSCCSCCEEEEEEEEEECTTCBTTTTBSCC
T ss_pred CCCCCCEEEEEEcCCcEEEeEEecCCEEEECHHhcCC--CeEEEEcccccccCCCCcEEEEEEEEEECCCCCCCCCCCcE
Confidence 344567766543 235799999999999999999973 34555521 12334444445554 4699
Q ss_pred EEEEEeeC-CCCCCeeeEEcCCC-CCCCCcEEEEeecCCCCc-------ceEEEeEEeceeeeeecCCceeeeEEEEe--
Q 008087 199 AMLTVEDD-EFWEGVLPVEFGEL-PALQDAVTVVGYPIGGDT-------ISVTSGVVSRIEILSYVHGSTELLGLQID-- 267 (578)
Q Consensus 199 AlLkv~~~-~~~~~~~~l~l~~~-~~~g~~V~~iG~p~g~~~-------~sv~~G~Is~~~~~~~~~~~~~~~~i~~d-- 267 (578)
|||+++.+ .+...+.|+.|... ...++.+++.||...... ..+..-+++...+...........+++..
T Consensus 86 ALl~L~~~~~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~ 165 (222)
T 1hj8_A 86 MLIKLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYL 165 (222)
T ss_dssp EEEEESSCCCCSSSCCCCBCCSSCCCTTCEEEEEESSCCCCSSCCTTBCEEEEEEBCCHHHHHHHSTTCCCTTEEEESCT
T ss_pred EEEEECCcccCCCceeccCCCCCCCCCCCEEEEEECCCCCCCCCCCceeEEEEEEEcCHHHhhhhccCCCCCCeEEeccC
Confidence 99999976 34456788888753 346889999998653211 11222233322222111111112345543
Q ss_pred ---cCCCCCCccceEEccCCeEEEEEeccccccccCCceeeecchhHHHHHHHHH
Q 008087 268 ---AAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 268 ---a~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
...|.|+|||||+. +|+++||++....-......+...-+...+.++++..
T Consensus 166 ~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~C~~~~~p~vyt~v~~~~~WI~~~~ 219 (222)
T 1hj8_A 166 EGGKDSCQGDSGGPVVC-NGELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219 (222)
T ss_dssp TSSCBCCTTCTTCEEEE-TTEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHH
T ss_pred CCCCccCCCCcccceEE-CCEEEEEEeecCCCCCCCcCcEEEEhHHhHHHHHHHh
Confidence 35789999999997 6899999987543222233466677777777776654
No 43
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2
Probab=99.47 E-value=8.7e-13 Score=128.72 Aligned_cols=181 Identities=19% Similarity=0.219 Sum_probs=108.9
Q ss_pred CCCCCccccCCC--cceEEEEEEEcCCEEEecccccCCCceEEEEEcC--------CCcEEEEEEEEEcC----------
Q 008087 135 PNFSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRG--------SDTKYLATVLAIGT---------- 194 (578)
Q Consensus 135 ~~~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~--------~g~~~~a~vv~~d~---------- 194 (578)
....+||+.... ....|+|.+|++.||||+|||+. ..+.|++.. .++.+..+-+..++
T Consensus 8 ~~~~~Pw~v~l~~~~~~~CgGsLI~~~~VLTAAHC~~--~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~ 85 (225)
T 1npm_A 8 IPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCKK--QKYSVRLGDHSLQSRDQPEQEIQVAQSIQHPCYNNSNPEDH 85 (225)
T ss_dssp CTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCC--SSCEEEESCSBTTC--CCCEEECEEEEEECTTCCSSCTTCC
T ss_pred CCCCcCcEEEEeeCCceEEEEEEECCCEEEEhHHcCC--CCceEEEeeeEcCCCCCCcEEEEEEEEEECCCCCCCCccCc
Confidence 334567766543 23579999999999999999996 345566521 12334444344443
Q ss_pred CCCEEEEEEeeC-CCCCCeeeEEcCCC-CCCCCcEEEEeecCCCC--------cceEEEeEEeceeeeeecCCceeeeEE
Q 008087 195 ECDIAMLTVEDD-EFWEGVLPVEFGEL-PALQDAVTVVGYPIGGD--------TISVTSGVVSRIEILSYVHGSTELLGL 264 (578)
Q Consensus 195 ~~DlAlLkv~~~-~~~~~~~~l~l~~~-~~~g~~V~~iG~p~g~~--------~~sv~~G~Is~~~~~~~~~~~~~~~~i 264 (578)
.+|||||+++.+ .+...+.|+.|... ...|+.++++||..... ...+..-+++...+...........++
T Consensus 86 ~~DIALl~L~~~~~~~~~v~pi~L~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~ 165 (225)
T 1npm_A 86 SHDIMLIRLQNSANLGDKVKPVQLANLCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGKITEGMV 165 (225)
T ss_dssp TTCCEEEEESSCCCCSSSSCCCEECSSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEECCHHHHHHHSTTTCCTTEE
T ss_pred cccEEEEeeCCcccCCCceeceECCCCCCCCCCEEEEEeCCcccCCCCCCCccceEeEEeeecHHHhhHHhCCCCCCCEE
Confidence 259999999976 34456888888763 35689999999864311 011222233322221111111112345
Q ss_pred EEe----cCCCCCCccceEEccCCeEEEEEeccc-cccccCCceeeecchhHHHHHHHH
Q 008087 265 QID----AAINSGNSGGPAFNDKGKCVGIAFQSL-KHEDVENIGYVIPTPVIMHFIQDY 318 (578)
Q Consensus 265 ~~d----a~i~~G~SGGPlvn~~G~vVGI~~~~~-~~~~~~~~~~aiPi~~i~~~l~~l 318 (578)
++. ...|.|+|||||+. +|.++||++... .-......+...-+...+.++++.
T Consensus 166 Ca~~~~~~~~C~GDSGgPL~~-~~~l~GI~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~ 223 (225)
T 1npm_A 166 CAGSSNGADTCQGDSGGPLVC-DGMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKT 223 (225)
T ss_dssp EEECTTCCBCCTTCTTCEEEE-TTEEEEEEEECCSSSCBTTBCEEEEEHHHHHHHHHHH
T ss_pred eecCCCCCeecCCCCCchheE-CCEEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHH
Confidence 542 46789999999997 689999998742 111112345566666666666553
No 44
>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P*
Probab=99.46 E-value=1.3e-12 Score=128.37 Aligned_cols=183 Identities=19% Similarity=0.167 Sum_probs=112.8
Q ss_pred CCCCCccccCCC--cceEEEEEEEcCCEEEecccccCCCceEEEEEcC--------CCcEEEEEEEEEcC----------
Q 008087 135 PNFSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRG--------SDTKYLATVLAIGT---------- 194 (578)
Q Consensus 135 ~~~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~--------~g~~~~a~vv~~d~---------- 194 (578)
....+||+.... ....|+|.+|++.||||+|||+.+... |.+.. .++.+..+-+..++
T Consensus 8 ~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~--v~~G~~~~~~~~~~~~~~~v~~~~~Hp~y~~~~~~~~ 85 (237)
T 2zch_P 8 EKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIRNKSV--ILLGRHSLFHPEDTGQVFQVSHSFPHPLYDMSLLKNR 85 (237)
T ss_dssp CTTSCTTEEEEESSSSEEEEEEEEETTEEEECGGGCCSSCE--EEESCSBSSSCCTTCEEEEEEEEEECTTSCGGGGTSS
T ss_pred CCCCCCCEEEEeeCCCeEEEEEEecCCEEEEcHHhcCCCce--EEEecccccCCCCCcEEEEEEEEecCCCcchhhhccc
Confidence 344567766432 245799999999999999999986543 44421 12344444444443
Q ss_pred --------CCCEEEEEEeeC-CCCCCeeeEEcCCC-CCCCCcEEEEeecCCCC--------cceEEEeEEeceeeeeecC
Q 008087 195 --------ECDIAMLTVEDD-EFWEGVLPVEFGEL-PALQDAVTVVGYPIGGD--------TISVTSGVVSRIEILSYVH 256 (578)
Q Consensus 195 --------~~DlAlLkv~~~-~~~~~~~~l~l~~~-~~~g~~V~~iG~p~g~~--------~~sv~~G~Is~~~~~~~~~ 256 (578)
.+|||||+++.+ .+...+.++.|... ...|+.+++.||..... ...+..-+++...+.....
T Consensus 86 ~~~~~~~~~~DIALl~L~~~~~~~~~v~pi~Lp~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~ 165 (237)
T 2zch_P 86 FLRPGDDSSHDLMLLRLSEPAELTDAVKVMDLPTQEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHP 165 (237)
T ss_dssp SCCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCSSCCCTTCEEEEEESCCSSSSSCCCCSBCEEEEEEEECHHHHHHHCS
T ss_pred ccccCCCCCcceEEEEeCCCCccCCcEeeeECCCCCCCCCCEEEEEeCCccCCCCCcCCcccEEeEEEEeCHHHhccccc
Confidence 569999999976 34456788888753 35688999999864311 1122333343322221111
Q ss_pred CceeeeEEEEe-----cCCCCCCccceEEccCCeEEEEEecccc-ccccCCceeeecchhHHHHHHHHHH
Q 008087 257 GSTELLGLQID-----AAINSGNSGGPAFNDKGKCVGIAFQSLK-HEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 257 ~~~~~~~i~~d-----a~i~~G~SGGPlvn~~G~vVGI~~~~~~-~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
......+|+.. ...|.|+|||||+. ++.++||++.... -......+....+...+.++++...
T Consensus 166 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~ 234 (237)
T 2zch_P 166 QKVTKFMLCAGRWTGGKSTCSGDSGGPLVC-NGVLQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTIV 234 (237)
T ss_dssp SBCCTTEEEEECTTCSCBCCTTCTTCEEES-SSSEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred CCCCceEEeecCCCCCCcccCCCccCeEEE-CCEEEEEEEeCcCCCCCCCCCcEEEEHHHHHHHHHHHHh
Confidence 11111245543 35789999999997 5899999987441 1112334666777777787776543
No 45
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...
Probab=99.46 E-value=1.4e-12 Score=127.05 Aligned_cols=181 Identities=14% Similarity=0.153 Sum_probs=111.3
Q ss_pred CCCCccccCCC-cceEEEEEEEcCCEEEecccccCCCceEEEEEcC--------CCcEEEEEEEEEcC-------CCCEE
Q 008087 136 NFSLPWQRKRQ-YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRG--------SDTKYLATVLAIGT-------ECDIA 199 (578)
Q Consensus 136 ~~~~p~~~~~~-~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~--------~g~~~~a~vv~~d~-------~~DlA 199 (578)
...+||+.... ....|+|.+|++.||||+|||+. ..+.|++.. +++.+..+-+..++ .+|||
T Consensus 9 ~~~~Pw~v~l~~~~~~CgGsLIs~~~VLTAAHC~~--~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIA 86 (223)
T 3mfj_A 9 ANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYK--SGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIM 86 (223)
T ss_dssp TTSSTTEEEEESSSEEEEEEEEETTEEEECGGGCC--SSCEEEESCSSTTSCCSCCEEEEEEEEEECTTCCTTTCTTCCE
T ss_pred CCcCCEEEEEEcCCeEEEEEEecCCEEEEhHHhcC--CCcEEEECCceecccCCCcEEEEeeEEEECCCCCCCCCCCCEE
Confidence 34556665431 13579999999999999999995 445666632 12334444444554 46999
Q ss_pred EEEEeeC-CCCCCeeeEEcCCC-CCCCCcEEEEeecCCCC--------cceEEEeEEeceeeeeecCCceeeeEEEEe--
Q 008087 200 MLTVEDD-EFWEGVLPVEFGEL-PALQDAVTVVGYPIGGD--------TISVTSGVVSRIEILSYVHGSTELLGLQID-- 267 (578)
Q Consensus 200 lLkv~~~-~~~~~~~~l~l~~~-~~~g~~V~~iG~p~g~~--------~~sv~~G~Is~~~~~~~~~~~~~~~~i~~d-- 267 (578)
||+++.+ .+...+.|+.|... ...|+.++++||..... ...+..-+++...+...........+++..
T Consensus 87 Ll~L~~~~~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~ 166 (223)
T 3mfj_A 87 LIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYL 166 (223)
T ss_dssp EEEESSCCCCBTTBCCCBCCSSCCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHSTTTCCTTEEEESCT
T ss_pred EEEeCCCcccCCcEeeeECCCCCCCCCCEEEEEeeeccCCCCCcccchheEEEEEEeCHHHhhhhhcCcCCCCEEEccCC
Confidence 9999976 34456888888753 35688999999864321 111222233322222111111112345553
Q ss_pred ---cCCCCCCccceEEccCCeEEEEEeccccccccCCceeeecchhHHHHHHHHH
Q 008087 268 ---AAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 268 ---a~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
...|.|+|||||+. +|+++||++....-......+....+...+.++++..
T Consensus 167 ~~~~~~C~GDSGgPL~~-~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~i 220 (223)
T 3mfj_A 167 EGGKDSCQGDSGGPVVC-SGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220 (223)
T ss_dssp TSSCBCCTTCTTCEEEE-TTEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHH
T ss_pred CCCCCcCCCCcccceEE-CCEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHH
Confidence 35789999999998 6899999987542212223456677777777776654
No 46
>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...
Probab=99.46 E-value=1.4e-12 Score=126.76 Aligned_cols=183 Identities=14% Similarity=0.150 Sum_probs=113.4
Q ss_pred CCCCCccccCCC-cceEEEEEEEcCCEEEecccccCCCceEEEEEcC--------CCcEEEEEEEEEcC-------CCCE
Q 008087 135 PNFSLPWQRKRQ-YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRG--------SDTKYLATVLAIGT-------ECDI 198 (578)
Q Consensus 135 ~~~~~p~~~~~~-~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~--------~g~~~~a~vv~~d~-------~~Dl 198 (578)
....+||+.... ....|+|.+|++.||||+|||+.. .+.|++.. ....+..+-+..++ .+||
T Consensus 8 ~~~~~Pw~v~l~~~~~~C~GtLI~~~~VLTAAhC~~~--~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DI 85 (223)
T 4i8h_A 8 GANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKS--GIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDI 85 (223)
T ss_dssp CTTSSTTEEEEESSSEEEEEEECSSSEEEECGGGCCS--SCEEEESCSSTTSCCSCCEEEEEEEEEECTTCCTTTCTTCC
T ss_pred CCCCCCeEEEecCCCcEEEEEEEcCCEEEecHHhCCC--CcEEEEccccccccCCCcEEEEEeEEEECcCCCCCCCcCCE
Confidence 334566665442 234699999999999999999975 34455521 12334444455555 4699
Q ss_pred EEEEEeeC-CCCCCeeeEEcCCC-CCCCCcEEEEeecCCCCc--------ceEEEeEEeceeeeeecCCceeeeEEEEe-
Q 008087 199 AMLTVEDD-EFWEGVLPVEFGEL-PALQDAVTVVGYPIGGDT--------ISVTSGVVSRIEILSYVHGSTELLGLQID- 267 (578)
Q Consensus 199 AlLkv~~~-~~~~~~~~l~l~~~-~~~g~~V~~iG~p~g~~~--------~sv~~G~Is~~~~~~~~~~~~~~~~i~~d- 267 (578)
|||+++.+ .+...+.|+.|... ...|+.+++.||...... ..+...+++...+...........+++..
T Consensus 86 All~L~~~~~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~ 165 (223)
T 4i8h_A 86 MLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGY 165 (223)
T ss_dssp EEEEESSCCCCBTTBCCCBCCSSCCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHSTTTCCTTEEEESC
T ss_pred EEEEECCcCcCCCceeceECCCCCCCCCCEEEEEecccccCCCCCccccceEEEeeecCHHHHHHhhCCCCCCCeEeccC
Confidence 99999976 34456788888753 456899999998643211 12222333322222111111122345542
Q ss_pred ----cCCCCCCccceEEccCCeEEEEEeccccccccCCceeeecchhHHHHHHHHHH
Q 008087 268 ----AAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 268 ----a~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
...|.|+|||||+. +++++||++....-......+.+..+...+.++++..+
T Consensus 166 ~~~~~~~C~GDsGgPl~~-~~~l~Gi~S~g~~c~~~~~p~vyt~v~~~~~WI~~~i~ 221 (223)
T 4i8h_A 166 LEGGKDSCQGDSGGPVVC-SGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221 (223)
T ss_dssp TTSSCBCCTTCTTCEEEE-TTEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred CCCCCccCCCCCCCcEEE-CCEEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence 35788999999998 57999999875432222334667778878888776554
No 47
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2
Probab=99.46 E-value=1.1e-12 Score=128.86 Aligned_cols=181 Identities=16% Similarity=0.147 Sum_probs=109.1
Q ss_pred CCCCccccCCC--cceEEEEEEEcCCEEEecccccCCCceEEEEEcC--------CCcEEEEEEEEEcC-----------
Q 008087 136 NFSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRG--------SDTKYLATVLAIGT----------- 194 (578)
Q Consensus 136 ~~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~--------~g~~~~a~vv~~d~----------- 194 (578)
...+||+.... ....|+|.+|++.||||+|||+. ..+.|.+.. .+..+..+-+..++
T Consensus 9 ~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~--~~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~~~ 86 (237)
T 1gvz_A 9 KHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCMS--DDYQIWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLSLLKKKY 86 (237)
T ss_dssp TTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCC--SSCEEEESCSBTTSCCTTCEEECEEEEEECTTSCGGGGGCSS
T ss_pred CCCCCeEEEEeeCCceEEEeEEeeCCEEEEcHHhCC--CCCeEEEeecccccCCCCceEEEeeeEecCCccCcccccccc
Confidence 34556665432 23579999999999999999996 445566522 12334444444543
Q ss_pred -------CCCEEEEEEeeC-CCCCCeeeEEcCCC-CCCCCcEEEEeecCCCC---c-----ceEEEeEEeceeeeeecCC
Q 008087 195 -------ECDIAMLTVEDD-EFWEGVLPVEFGEL-PALQDAVTVVGYPIGGD---T-----ISVTSGVVSRIEILSYVHG 257 (578)
Q Consensus 195 -------~~DlAlLkv~~~-~~~~~~~~l~l~~~-~~~g~~V~~iG~p~g~~---~-----~sv~~G~Is~~~~~~~~~~ 257 (578)
.+|||||+++.+ .+...+.|+.|... ...|+.++++||..... . ..+..-+++...+......
T Consensus 87 ~~~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~ 166 (237)
T 1gvz_A 87 LRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPE 166 (237)
T ss_dssp CCTTSCCTTCCEEEEESSCCCCBTTBCCCCCCSSCCCTTCEEEEEEEECSCTTTCSEEEEEEEEEEEEECGGGGCSSCGG
T ss_pred cccccccCCceEEEEeCCCcccCCcEeeeECCCCCCCCCCEEEEECCCcccCCCCCCCCccEEEEEeEeChhHhhhhhhh
Confidence 689999999986 34456788888753 34688999999875311 1 0112222322222211111
Q ss_pred ceeeeEEEEe-----cCCCCCCccceEEccCCeEEEEEeccc-cccccCCceeeecchhHHHHHHHHH
Q 008087 258 STELLGLQID-----AAINSGNSGGPAFNDKGKCVGIAFQSL-KHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 258 ~~~~~~i~~d-----a~i~~G~SGGPlvn~~G~vVGI~~~~~-~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
.....+++.. ...|.|+|||||+. +|.++||++... .-......+....+...+.++++..
T Consensus 167 ~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~GI~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~ 233 (237)
T 1gvz_A 167 KMTEFVLCATHRDDSGSICLGDSGGALIC-DGVFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETI 233 (237)
T ss_dssp GCCTTEEEEECSSTTCEECGGGTTCEEEE-TTEEEEEECCCSSSCEETTTSCCEEESGGGHHHHHHHH
T ss_pred cCCCceEEEeeCCCCCccCCCCccCcEee-CCEEEEEEEeCCCCCCCCCCCcEEEEHHHHHHHHHHHH
Confidence 1111244443 24688999999997 689999998743 1111223345667777777776644
No 48
>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H*
Probab=99.45 E-value=1.3e-12 Score=129.66 Aligned_cols=186 Identities=17% Similarity=0.185 Sum_probs=116.5
Q ss_pred CCCCCccccCCC---cceEEEEEEEcCCEEEecccccCCCceEEEEEcCC--------CcEEEEEEEEEcC-------CC
Q 008087 135 PNFSLPWQRKRQ---YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGS--------DTKYLATVLAIGT-------EC 196 (578)
Q Consensus 135 ~~~~~p~~~~~~---~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~--------g~~~~a~vv~~d~-------~~ 196 (578)
....+||+.... ....|+|.+|++.||||+|||+.....+.|++... ...+..+-+..++ .+
T Consensus 8 ~~~~~Pw~v~l~~~~~~~~CgGsLI~~~~VLTAAHC~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~ 87 (250)
T 1aut_C 8 RRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDN 87 (250)
T ss_dssp CTTSCTTEEEEECTTSCEEEEEEEEETTEEEECGGGSSSCSCCEEEESCCBTTCCCTTCEEEEEEEEEECTTCBTTTTBT
T ss_pred CCCCCCCEEEEecCCCceEEEEEEeeCCEEEEChHHcCCCCceEEEEcccccCCCCCccEEEEEEEEEECCCCCCCCCCC
Confidence 344567765432 23579999999999999999998877778887321 1234444444554 36
Q ss_pred CEEEEEEeeC-CCCCCeeeEEcCCC-------CCCCCcEEEEeecCCCC------------cceEEEeEEeceeeeeecC
Q 008087 197 DIAMLTVEDD-EFWEGVLPVEFGEL-------PALQDAVTVVGYPIGGD------------TISVTSGVVSRIEILSYVH 256 (578)
Q Consensus 197 DlAlLkv~~~-~~~~~~~~l~l~~~-------~~~g~~V~~iG~p~g~~------------~~sv~~G~Is~~~~~~~~~ 256 (578)
|||||+++.+ .+...+.|+.|... ...|+.+++.||..... ...+..-+++...+.....
T Consensus 88 DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~ 167 (250)
T 1aut_C 88 DIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMS 167 (250)
T ss_dssp CCEEEEESSCCCCBTTBCCCBCCCHHHHHHTTTSTTCEEEEEECCCCCSCCSCCCSSCSSBCEEEEEEEECHHHHHHHCS
T ss_pred cEEEEEECCcccCCCceeeeEcCCCccccccccCCCCEEEEEEeCCCCCCCccccccccceeeEEEEEEecHHHhhHHhc
Confidence 9999999986 34456778888652 24688999999864321 1123333444333322111
Q ss_pred CceeeeEEEEe-----cCCCCCCccceEEcc-CCe--EEEEEeccccccccCCceeeecchhHHHHHHHHHH
Q 008087 257 GSTELLGLQID-----AAINSGNSGGPAFND-KGK--CVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 257 ~~~~~~~i~~d-----a~i~~G~SGGPlvn~-~G~--vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
......+|+.. ...|.|+|||||+.. +|+ ++||++....-......+...-+...+.++++..+
T Consensus 168 ~~~~~~~~Cag~~~~~~~~C~GDSGGPL~~~~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~ 239 (250)
T 1aut_C 168 NMVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIR 239 (250)
T ss_dssp SCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEECGGGTHHHHHHHHC
T ss_pred cCCCCCEEEeCCCCCCCCCCCCCCchheEEEECCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhh
Confidence 11112345542 357899999999964 564 99999875432222334566777777777777654
No 49
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Probab=99.44 E-value=1.9e-12 Score=127.31 Aligned_cols=182 Identities=15% Similarity=0.100 Sum_probs=111.4
Q ss_pred CCCCCccccCCC--cceEEEEEEEcCCEEEecccccCCCceEEEEEcCC--------CcEEEEEEEEEcC----------
Q 008087 135 PNFSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGS--------DTKYLATVLAIGT---------- 194 (578)
Q Consensus 135 ~~~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~--------g~~~~a~vv~~d~---------- 194 (578)
....+||+.... ....|+|.+|++.||||+|||+. ..+.|.+... .+.+..+-+..++
T Consensus 8 ~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~--~~~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~y~~~~~~~~ 85 (237)
T 1ao5_A 8 EKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYV--DQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQ 85 (237)
T ss_dssp CTTSCTTEEEEEETTEEEEEEEEEETTEEEECTTCCC--SSCEEEESCCBSSSCCSSCEECCEEEEEECTTSCGGGGGCS
T ss_pred CCCCcCCEEEEeeCCCeEEEEEEeeCCEEEECHHHCC--CCCEEEecccccccCCCCcEEEEEEEEEcCCCcCccccccc
Confidence 334567766442 23579999999999999999996 3456666311 1222333333333
Q ss_pred --------CCCEEEEEEeeC-CCCCCeeeEEcCCC-CCCCCcEEEEeecCCCC--------cceEEEeEEeceeeeeecC
Q 008087 195 --------ECDIAMLTVEDD-EFWEGVLPVEFGEL-PALQDAVTVVGYPIGGD--------TISVTSGVVSRIEILSYVH 256 (578)
Q Consensus 195 --------~~DlAlLkv~~~-~~~~~~~~l~l~~~-~~~g~~V~~iG~p~g~~--------~~sv~~G~Is~~~~~~~~~ 256 (578)
.+|||||+++.+ .+...+.|+.|... ...|+.+++.||..... ...+..-+++...+.....
T Consensus 86 ~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~ 165 (237)
T 1ao5_A 86 TIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYL 165 (237)
T ss_dssp SCCTTCCCTTCCEEEEESSCCCCCSSSCCCCCCCSCCCTTCEEEEEESCCSSCC-CCCCSBCEEEEEEEECHHHHHHHCS
T ss_pred ccccccCCCCCEEEEEeCCccccCCceeCCCcCCCCCCCCCEEEEEECCccCCCCCCCCCcccEEEEEecChhHhhhhhc
Confidence 679999999976 34456788888753 34688999999864211 1123333443322221111
Q ss_pred CceeeeEEEEe-----cCCCCCCccceEEccCCeEEEEEecc-ccccccCCceeeecchhHHHHHHHHH
Q 008087 257 GSTELLGLQID-----AAINSGNSGGPAFNDKGKCVGIAFQS-LKHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 257 ~~~~~~~i~~d-----a~i~~G~SGGPlvn~~G~vVGI~~~~-~~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
......+|+.. ...|.|+|||||+. +|.++||++.. ..-......+....+...+.++++..
T Consensus 166 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~ 233 (237)
T 1ao5_A 166 QKVTDVMLCAGEMGGGKDTCRDDSGGPLIC-DGILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTM 233 (237)
T ss_dssp SCCCTTEEEEECTTCSCBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEECGGGGHHHHHHHH
T ss_pred ccCCCCEEEEccCCCCCCCCCCCCcceEEE-CCEEeEEEeEcCCCCCCCCCCcEEEEHHHHHHHHHHHH
Confidence 11112345543 35789999999998 68999999874 22111123456677777777776654
No 50
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Probab=99.44 E-value=2.1e-12 Score=127.17 Aligned_cols=186 Identities=17% Similarity=0.101 Sum_probs=112.5
Q ss_pred eCCCCCCccccCCC--cceEEEEEEEcCCEEEecccccCC---CceEEEEEcCC--------CcEEEEEEEEEcC-----
Q 008087 133 TEPNFSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEH---YTQVKLKKRGS--------DTKYLATVLAIGT----- 194 (578)
Q Consensus 133 ~~~~~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~---~~~i~V~~~~~--------g~~~~a~vv~~d~----- 194 (578)
......+||+.... ....|+|.+|++.||||+|||+.. ...+.|.+... .+.+..+-+..++
T Consensus 8 ~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~ 87 (240)
T 1mza_A 8 EVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIPFSRVTSD 87 (240)
T ss_dssp ECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGSCTTCSCSCEEEEESCSBSSSCCTTCEEEEEEEEEECCCSSCS
T ss_pred ECCCCCCCeEEEEeeCCceEEEEEEecCCEEEECHHhCCCCCCCCCeEEEeCceecCCCCCceEEEEEEEEEeCCCccCC
Confidence 33444566765443 245799999999999999999864 45677777321 1334444444443
Q ss_pred --CCCEEEEEEeeC-CCCCCeeeEEcCC--CCCCCCcEEEEeecCCCC--------cceEEEeEEeceeee--eecCC--
Q 008087 195 --ECDIAMLTVEDD-EFWEGVLPVEFGE--LPALQDAVTVVGYPIGGD--------TISVTSGVVSRIEIL--SYVHG-- 257 (578)
Q Consensus 195 --~~DlAlLkv~~~-~~~~~~~~l~l~~--~~~~g~~V~~iG~p~g~~--------~~sv~~G~Is~~~~~--~~~~~-- 257 (578)
.+|||||+++.+ .+...+.|+.|.. ....|+.+++.||..... ...+..-+++...+. .....
T Consensus 88 ~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~~~~~ 167 (240)
T 1mza_A 88 PQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDP 167 (240)
T ss_dssp SSSSCCEEEEESSCCCCBTTBCCCCBCSSCCCCTTCEEEEEECCCSSTTCSSCCSBCEEEEEEECCHHHHTSTTTTTTTT
T ss_pred CCCceEEEEEeCCCcccCCceeeeecCCcccCCCCCEEEEEeCCcCCCCCCCccccceEeEEEEeCHHHcCCcceeCCCC
Confidence 479999999976 3445678888865 234588999999864311 112223333332222 11111
Q ss_pred ceeeeEEEEe-----cCCCCCCccceEEccCCeEEEEEeccccccccCCceeeecchh-HHHHHHHHH
Q 008087 258 STELLGLQID-----AAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPV-IMHFIQDYE 319 (578)
Q Consensus 258 ~~~~~~i~~d-----a~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~~~~~~~aiPi~~-i~~~l~~l~ 319 (578)
.....+++.. ...|.|+|||||+. +|.++||++....-......+...-+.. .+.++++..
T Consensus 168 ~~~~~~~Ca~~~~~~~~~C~GDSGGPL~~-~~~l~Gi~S~g~~C~~~~~p~vyt~v~~~y~~WI~~~~ 234 (240)
T 1mza_A 168 FITKDMVCAGDAKGQKDSCKGDAGGPLIC-KGVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNL 234 (240)
T ss_dssp CCCTTEEEEECTTSCCCCCTTCTTCEEEE-TTEEEEEECSSCCSSCTTCCEEEEECCHHHHHHHHHHT
T ss_pred cCCCCeEeecCCCCCCccCCCCCCCeeEE-CCEEEEEEEECCCCCCCCCCcEEEeChHHHHHHHHHhc
Confidence 1112345542 36789999999998 6899999987542211123345556665 666666543
No 51
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Probab=99.44 E-value=2.2e-12 Score=125.72 Aligned_cols=181 Identities=20% Similarity=0.156 Sum_probs=111.7
Q ss_pred CCCCccccCCC--cceEEEEEEEcCCEEEecccccCCCceEEEEEcC--------CCcEEEEEEEEEcC-------CCCE
Q 008087 136 NFSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRG--------SDTKYLATVLAIGT-------ECDI 198 (578)
Q Consensus 136 ~~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~--------~g~~~~a~vv~~d~-------~~Dl 198 (578)
...+||+.... ....|+|.+|++.||||+|||+.. .+.|.+.. .++.+...-+..++ .+||
T Consensus 9 ~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~--~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DI 86 (223)
T 1lo6_A 9 KTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKKP--NLQVFLGKHNLRQRESSQEQSSVVRAVIHPDYDAASHDQDI 86 (223)
T ss_dssp TTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCCT--TCEEEESCSBTTSCCTTCEEEEEEEEEECTTCCTTTCTTCC
T ss_pred CCCCCCEEEEecCCCEEEEeEEecCCEEEECccCCCC--CeEEEEcceecCCCCCCcEEEEEEEEEECCCCCCCCCcCeE
Confidence 34566665432 235799999999999999999974 34555521 12334444444444 4699
Q ss_pred EEEEEeeC-CCCCCeeeEEcCCC-CCCCCcEEEEeecCCCC------cceEEEeEEeceeeeeecCCceeeeEEEEe---
Q 008087 199 AMLTVEDD-EFWEGVLPVEFGEL-PALQDAVTVVGYPIGGD------TISVTSGVVSRIEILSYVHGSTELLGLQID--- 267 (578)
Q Consensus 199 AlLkv~~~-~~~~~~~~l~l~~~-~~~g~~V~~iG~p~g~~------~~sv~~G~Is~~~~~~~~~~~~~~~~i~~d--- 267 (578)
|||+++.+ .+...+.|+.|... ...++.++++||..... ...+..-+++...+...........+++..
T Consensus 87 All~L~~~~~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~ 166 (223)
T 1lo6_A 87 MLLRLARPAKLSELIQPLPLERDCSANTTSCHILGWGKTADGDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEK 166 (223)
T ss_dssp EEEEESSCCCCBTTBCCCCBCCCTTCCCCEEEEEESSCCTTSSCCSBCEEEEEEEECHHHHHHHSTTTCCTTEEEEECTT
T ss_pred EEEEECCcccCCCceeecccCCCCCCCCCEEEEEEECCCCCCCcCceeeEEEEEEeCHHHhhhhhCCCCCCCeEEeecCC
Confidence 99999976 34456788888753 35688999999864321 112233344433332211111112345542
Q ss_pred --cCCCCCCccceEEccCCeEEEEEecc-ccccccCCceeeecchhHHHHHHHHH
Q 008087 268 --AAINSGNSGGPAFNDKGKCVGIAFQS-LKHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 268 --a~i~~G~SGGPlvn~~G~vVGI~~~~-~~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
...|.|+|||||+. +|.++||++.. ..-......+...-+...+.++++..
T Consensus 167 ~~~~~C~GDsGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i 220 (223)
T 1lo6_A 167 YGKDSCQGDSGGPLVC-GDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTI 220 (223)
T ss_dssp TCCBCCTTTTTCEEEE-TTEEEEEEEECCSSCCCSSSCEEEEEGGGGHHHHHHHH
T ss_pred CCCeeccccCCCcEEe-CCEEEEEEeeCCCCCCCCCCCcEEEEHHHHHHHHHHHh
Confidence 35789999999998 58999999874 22111223456677777777777654
No 52
>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A*
Probab=99.44 E-value=2.2e-12 Score=125.72 Aligned_cols=166 Identities=18% Similarity=0.145 Sum_probs=104.1
Q ss_pred eEEEEEEEcCCEEEecccccCCCceEEEEEcC--------CCcEEEEEEEEEcCC-------CCEEEEEEeeC-CCCCCe
Q 008087 149 SSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRG--------SDTKYLATVLAIGTE-------CDIAMLTVEDD-EFWEGV 212 (578)
Q Consensus 149 ~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~--------~g~~~~a~vv~~d~~-------~DlAlLkv~~~-~~~~~~ 212 (578)
..|+|.+|++.||||+|||+.+ .+.|++.. ....+..+-+..++. +|||||+++.+ .+...+
T Consensus 27 ~~CgGsLI~~~~VLTAAHC~~~--~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v 104 (224)
T 1cgh_A 27 SRCGGFLVREDFVLTAAHCWGS--NINVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNV 104 (224)
T ss_dssp CEEEEEEEETTEEEECGGGCCS--SEEEEESCSBTTSCCTTCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCBTTB
T ss_pred eEEEEEEeeCCEEEEhHHhCCC--CCEEEEeecccCCCCCccEEEEEEEEEcCCCCCCCCCcCCEEEEEECCCCcCCCce
Confidence 5899999999999999999976 45666621 123445554555543 59999999976 344567
Q ss_pred eeEEcCCCC---CCCCcEEEEeecCCCC------cceEEEeEEeceeeeeecCCceeeeEEEEe-----cCCCCCCccce
Q 008087 213 LPVEFGELP---ALQDAVTVVGYPIGGD------TISVTSGVVSRIEILSYVHGSTELLGLQID-----AAINSGNSGGP 278 (578)
Q Consensus 213 ~~l~l~~~~---~~g~~V~~iG~p~g~~------~~sv~~G~Is~~~~~~~~~~~~~~~~i~~d-----a~i~~G~SGGP 278 (578)
.|+.|.... ..|+.+++.||..... ...+...+++...+...........++++. ...|.|+||||
T Consensus 105 ~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgP 184 (224)
T 1cgh_A 105 NPVALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGP 184 (224)
T ss_dssp CCCBCCCTTCCCCTTCEEEEEESCCSSSSCCCSBCEEEEEEBCCHHHHHHHCTTCCTTTEEEECCTTSCCBCCTTCTTCE
T ss_pred EeeECCCCCCCCCCCCEEEEEECCcCCCCCCCCcceEEEEEeeCHHHHHHHhCcCCCcceEeeccCCCCCeEeeCCCccc
Confidence 888887533 3578899999864321 112222333322221111110111145542 35789999999
Q ss_pred EEccCCeEEEEEeccccccccCCceeeecchhHHHHHHHHH
Q 008087 279 AFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 279 lvn~~G~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
|+. +|.++||++.... .....+...-+...+.++++..
T Consensus 185 L~~-~~~l~Gi~S~g~~--~~~~p~vyt~V~~~~~WI~~~~ 222 (224)
T 1cgh_A 185 LLC-NNVAHGIVSYGKS--SGVPPEVFTRVSSFLPWIRTTM 222 (224)
T ss_dssp EEE-TTEEEEEEEECCT--TCCSCEEEEEGGGGHHHHHHHH
T ss_pred eEE-ccEEEEEEEEECC--CCCCCeEEEEHHHhHHHHHHHh
Confidence 998 5799999987431 2233456677777777776654
No 53
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2
Probab=99.43 E-value=3.2e-12 Score=124.14 Aligned_cols=168 Identities=16% Similarity=0.182 Sum_probs=100.6
Q ss_pred ceEEEEEEEcCCEEEecccccCCCc--eEEEEEcCC--------CcEEEEEEEEEc------CCCCEEEEEEeeC-CCCC
Q 008087 148 SSSSSGFAIGGRRVLTNAHSVEHYT--QVKLKKRGS--------DTKYLATVLAIG------TECDIAMLTVEDD-EFWE 210 (578)
Q Consensus 148 ~~~GsGfvI~~g~ILT~aHvV~~~~--~i~V~~~~~--------g~~~~a~vv~~d------~~~DlAlLkv~~~-~~~~ 210 (578)
...|+|.+|++.||||+|||+.+.. .+.|.+... ...+..+-+..+ ..+|||||+++.+ .+..
T Consensus 26 ~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h~y~~~~~~~DiALl~L~~~~~~~~ 105 (221)
T 1fuj_A 26 SHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGAHNVRTQEPTQQHFSVAQVFLNNYDAENKLNDILLIQLSSPANLSA 105 (221)
T ss_dssp CCCEEEEEEETTEEEECGGGGSSSCGGGEEEEESCSBTTSCCTTCEEEEEEEEEECCCBTTTTBCCCEEEEESSCCCCCS
T ss_pred CEEEEEEEecCCEEEEchHhcCcCCCCceEEEEeeeeccCCCCceEEEEEEEEEeCCCCCCCCcccEEEEEeCCccccCC
Confidence 3579999999999999999998643 577777321 223333333332 3579999999976 3445
Q ss_pred CeeeEEcCCCC---CCCCcEEEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEE-----ecCCCCCCccceEEcc
Q 008087 211 GVLPVEFGELP---ALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQI-----DAAINSGNSGGPAFND 282 (578)
Q Consensus 211 ~~~~l~l~~~~---~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~-----da~i~~G~SGGPlvn~ 282 (578)
.+.|+.|.... ..|+.++++||...... ......+........ .......+++. ....|.|+|||||+.
T Consensus 106 ~v~picL~~~~~~~~~~~~~~~~GwG~~~~~-~~~~~~l~~~~~~~~-~~~C~~~~~Ca~~~~~~~~~C~GDSGgPL~~- 182 (221)
T 1fuj_A 106 SVATVQLPQQDQPVPHGTQCLAMGWGRVGAH-DPPAQVLQELNVTVV-TFFCRPHNICTFVPRRKAGICFGDSGGPLIC- 182 (221)
T ss_dssp SCCCCBCCCTTCCCCTTCEEEEEESSBSCSS-SCBCSBCEEEEEEEE-CTTCCTTEEEEECSSSSCBCCTTCTTCEEEE-
T ss_pred cceeeECCCCcCCCCCCCEEEEEEeCCCCCC-CCHHHHhhcccceEE-eeecCCceeeeccCCCCCCCCCCCCCCeeEE-
Confidence 67888887533 35889999998653211 000011111111111 01100013333 246789999999998
Q ss_pred CCeEEEEEeccc-cccccCCceeeecchhHHHHHHHH
Q 008087 283 KGKCVGIAFQSL-KHEDVENIGYVIPTPVIMHFIQDY 318 (578)
Q Consensus 283 ~G~vVGI~~~~~-~~~~~~~~~~aiPi~~i~~~l~~l 318 (578)
+|.++||++... +-......+....+...+.++++.
T Consensus 183 ~~~l~Gi~s~~~~gC~~~~~p~vyt~v~~~~~WI~~~ 219 (221)
T 1fuj_A 183 DGIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRST 219 (221)
T ss_dssp TTEEEEEEEECSSSTTCSSSCEEEEEGGGGHHHHHHH
T ss_pred CCEEeEEEEEeccCCCCCCCCcEEEeHHHHHHHHHHH
Confidence 689999998632 111112345567777777777654
No 54
>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A
Probab=99.43 E-value=2.2e-13 Score=127.08 Aligned_cols=117 Identities=20% Similarity=0.243 Sum_probs=79.6
Q ss_pred ceEEEEEEEc-CCEEEecccccCCCceEEEEEcCCCcEEEEEEEEEcCCCCEEEEEEeeCCCCCCeeeEEcCCCCCCCCc
Q 008087 148 SSSSSGFAIG-GRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWEGVLPVEFGELPALQDA 226 (578)
Q Consensus 148 ~~~GsGfvI~-~g~ILT~aHvV~~~~~i~V~~~~~g~~~~a~vv~~d~~~DlAlLkv~~~~~~~~~~~l~l~~~~~~g~~ 226 (578)
.++|+||.|+ +++|||++|||.+... .++. ++..+. +.+|+..|+|++++.... ..++.++|+.....|..
T Consensus 29 ~GsGt~F~i~g~~~VvTA~HVVg~~~~-vVt~--~g~r~~---~~f~~~~D~All~i~~~~--g~~P~lKlA~~~~~G~a 100 (213)
T 3fan_A 29 MGSGGVFTIDGKIKCVTAAHVLTGNSA-RVSG--VGFNQM---LDFDVKGDFAIADCPNWQ--GVAPKAQFCEDGWTGRA 100 (213)
T ss_dssp EEEEEEEEETTEEEEEEEGGGSBTTEE-EEEE--TTEEEE---EECEEETTEEEEECTTCC--SCCCBCCBCCTTCCEEE
T ss_pred CCceEEEEECCcEEEEEeccEeCCCCE-EEec--CCcEEE---EEecCCCcEEEEEccCcC--CCCCcceeeeeeccCce
Confidence 5689999998 6799999999999888 5665 666654 477999999999996421 36788888754333322
Q ss_pred EEEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCccceEEccCCeEEEEEeccc
Q 008087 227 VTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSL 294 (578)
Q Consensus 227 V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGPlvn~~G~vVGI~~~~~ 294 (578)
.+..-+ -+..|.|..- ..+.+ .++|||||||+|.+|+||||++++-
T Consensus 101 ~~~~~~-------gv~~G~i~~~------------~al~~---T~pGdSGsPVvn~dG~VIGVHt~s~ 146 (213)
T 3fan_A 101 YWLTSS-------GVEPGVIGNG------------FAFCF---TACGDSGSPVITEAGELVGVHTGSN 146 (213)
T ss_dssp EEEETT-------EEEEEEEETT------------EEEES---SCCCSTTCEEEETTSCEEEEEEC--
T ss_pred EEEEcc-------CccccccccC------------CEEEe---cCCCCCCCccCCCCCcEEEEEeccC
Confidence 221111 2233333321 02222 2689999999999999999999843
No 55
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Probab=99.43 E-value=2.7e-12 Score=125.11 Aligned_cols=182 Identities=16% Similarity=0.158 Sum_probs=111.0
Q ss_pred CCCCCccccCCC--cceEEEEEEEcCCEEEecccccCCCceEEEEEcC---------CCcEEEEEEEEEcC-------CC
Q 008087 135 PNFSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRG---------SDTKYLATVLAIGT-------EC 196 (578)
Q Consensus 135 ~~~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~---------~g~~~~a~vv~~d~-------~~ 196 (578)
....+||+.... ....|+|.+|++.||||+|||+.+. +.|.+.. +.+.+...-+..++ .+
T Consensus 8 ~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~~--~~v~~g~~~~~~~~~~~~~~~~v~~~~~Hp~y~~~~~~~ 85 (223)
T 2bdg_A 8 SPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCFQNS--YTIGLGLHSLEADQEPGSQMVEASLSVRHPEYNRPLLAN 85 (223)
T ss_dssp CTTSSTTEEEEECSSCEEEEEEEEETTEEEECGGGCCSS--EEEEESCSBSCGGGCTTCEEEEEEEEEECTTTTSSTTCS
T ss_pred CCCCCCcEEEEeeCCCEEEEEEEecCCEEEEhHHhCCCC--eEEEEeeeecCCCCCCCcEEEEEEEEEeCCCCCCCCCcC
Confidence 344567766432 2457999999999999999999753 4555521 12234444445554 46
Q ss_pred CEEEEEEeeC-CCCCCeeeEEcCCC-CCCCCcEEEEeecCCCCc------ceEEEeEEeceeeeeecCCceeeeEEEEe-
Q 008087 197 DIAMLTVEDD-EFWEGVLPVEFGEL-PALQDAVTVVGYPIGGDT------ISVTSGVVSRIEILSYVHGSTELLGLQID- 267 (578)
Q Consensus 197 DlAlLkv~~~-~~~~~~~~l~l~~~-~~~g~~V~~iG~p~g~~~------~sv~~G~Is~~~~~~~~~~~~~~~~i~~d- 267 (578)
|||||+++.+ .+...+.|+.|... ...++.+++.||...... ..+..-+++...+...........+|+..
T Consensus 86 DIALl~L~~~v~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~ 165 (223)
T 2bdg_A 86 DLMLIKLDESVSESDTIRSISIASQCPTAGNSCLVSGWGLLANGRMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGG 165 (223)
T ss_dssp CCEEEEESSCCCCCSSCCCCCBCSSCCCTTCEEEEEESCCCTTSCCCSBCEEEEEEBCCHHHHHHHSTTTCCTTEEEECC
T ss_pred cEEEEEECCcccCCCceecccCCCCCCCCCCEEEEEeCcccCCCCCCCcceEEEEEEeCHHHhhhhhCCCCCCCeEeccC
Confidence 9999999976 34456788888753 356889999998753211 11222233322222111111112345553
Q ss_pred ----cCCCCCCccceEEccCCeEEEEEecccc-ccccCCceeeecchhHHHHHHHHH
Q 008087 268 ----AAINSGNSGGPAFNDKGKCVGIAFQSLK-HEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 268 ----a~i~~G~SGGPlvn~~G~vVGI~~~~~~-~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
...|.|+|||||+. +|.++||++.... -......+...-+...+.++++..
T Consensus 166 ~~~~~~~C~GDsGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i 221 (223)
T 2bdg_A 166 GQDQKDSCNGDSGGPLIC-NGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTV 221 (223)
T ss_dssp STTCCBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEECGGGTHHHHHHHH
T ss_pred CCCCCCcCCCCCCchheE-ccEEEEEEEecCCCCCCCCCCcEEEEHHHhHHHHHHHh
Confidence 35789999999997 5799999987431 111223455677777777776643
No 56
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Probab=99.43 E-value=2.1e-12 Score=126.03 Aligned_cols=182 Identities=18% Similarity=0.180 Sum_probs=111.4
Q ss_pred CCCCccccCCCc--ceEEEEEEEcCCEEEecccccCCCceEEEEEcCC------CcEEEEEEEEEcC-------CCCEEE
Q 008087 136 NFSLPWQRKRQY--SSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGS------DTKYLATVLAIGT-------ECDIAM 200 (578)
Q Consensus 136 ~~~~p~~~~~~~--~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~------g~~~~a~vv~~d~-------~~DlAl 200 (578)
...+||+..... ...|+|.+|++.||||+|||+. ..+.|.+... .+.+..+-+..++ .+||||
T Consensus 9 ~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~--~~~~v~~G~~~~~~~~~~~~~v~~~~~Hp~y~~~~~~~DIAL 86 (224)
T 2qxi_A 9 RGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKM--NEYTVHLGSDTLGDRRAQRIKASKSFRHPGYSTQTHVNDLML 86 (224)
T ss_dssp TTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCC--SCEEEEESCSBTTCTTSEEEEECEEEECTTCCTTTCTTCCEE
T ss_pred CCCCCCEEEEeeCCCeEEEEEEecCCEEEEhHHcCC--CCcEEEEeeeecCCCccEEEEEEEEEECCCCCCCCCcCcEEE
Confidence 345566654321 2279999999999999999994 5677777321 2234444444554 369999
Q ss_pred EEEeeC-CCCCCeeeEEcCCC-CCCCCcEEEEeecCCCC--------cceEEEeEEeceeeeeecCCceeeeEEEEe---
Q 008087 201 LTVEDD-EFWEGVLPVEFGEL-PALQDAVTVVGYPIGGD--------TISVTSGVVSRIEILSYVHGSTELLGLQID--- 267 (578)
Q Consensus 201 Lkv~~~-~~~~~~~~l~l~~~-~~~g~~V~~iG~p~g~~--------~~sv~~G~Is~~~~~~~~~~~~~~~~i~~d--- 267 (578)
|+++.+ .+...+.|+.|... ...|+.++++||..... ...+...+++..++...........+++..
T Consensus 87 l~L~~~~~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~ 166 (224)
T 2qxi_A 87 VKLNSQARLSSMVKKVRLPSRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPD 166 (224)
T ss_dssp EECSSCCCCBTTBCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECHHHHHHHHGGGCCTTEEEEECTT
T ss_pred EEeCCCCcCCCceeeEECCCCCCCCCCEEEEEeCCccCCCCCCCChhheEEEeeecCHHHhhHHhcCcCCCCeEEecCCC
Confidence 999876 34456788888753 34688999999865321 112233344433322111111111245543
Q ss_pred --cCCCCCCccceEEccCCeEEEEEecc-ccccccCCceeeecchhHHHHHHHHHH
Q 008087 268 --AAINSGNSGGPAFNDKGKCVGIAFQS-LKHEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 268 --a~i~~G~SGGPlvn~~G~vVGI~~~~-~~~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
...|.|+|||||+. +|.++||++.. ..-......+...-+...+.++++..+
T Consensus 167 ~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~ 221 (224)
T 2qxi_A 167 SKKNACNGDSGGPLVC-RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMK 221 (224)
T ss_dssp CCCBCCTTCTTCEEEE-TTEEEEEEEECCSSSCCTTCCEEEEEGGGSHHHHHHHHH
T ss_pred CCCccCCCCccccEEE-CCEEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence 35789999999998 68999999874 221111234556777777777766543
No 57
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A*
Probab=99.42 E-value=2.4e-12 Score=125.79 Aligned_cols=183 Identities=14% Similarity=0.157 Sum_probs=110.2
Q ss_pred CCCCCccccCCC---cceEEEEEEEcCCEEEecccccCCCceEEEEEcC---------CCcEEEEEEEEEcC-------C
Q 008087 135 PNFSLPWQRKRQ---YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRG---------SDTKYLATVLAIGT-------E 195 (578)
Q Consensus 135 ~~~~~p~~~~~~---~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~---------~g~~~~a~vv~~d~-------~ 195 (578)
....+||+.... ....|+|.+|++.||||+|||+... +.|++.. ..+.+...-+..++ .
T Consensus 8 ~~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAHC~~~~--~~v~~G~~~~~~~~~~~~~~~~v~~~~~Hp~y~~~~~~ 85 (227)
T 2psx_A 8 DMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCRKKV--FRVRLGHYSLSPVYESGQQMFQGVKSIPHPGYSHPGHS 85 (227)
T ss_dssp CTTSCTTEEEEEETTTEEEEEEEEEETTEEEECGGGCCSS--CEEEESCCBSSCCCCTTCEEEEEEEEEECTTCCSSSCT
T ss_pred CCCCCCCEEEEEecCCCceEEEEEEcCCEEEEhHHcCCCC--cEEEEeeeecccCCCCCcEEEEEEEEEeCCCCCCCCCC
Confidence 344567765432 2357999999999999999999753 4555521 12234444344443 4
Q ss_pred CCEEEEEEeeC-CCCCCeeeEEcCCC-CCCCCcEEEEeecCCCCc--------ceEEEeEEeceeeeeecCCceeeeEEE
Q 008087 196 CDIAMLTVEDD-EFWEGVLPVEFGEL-PALQDAVTVVGYPIGGDT--------ISVTSGVVSRIEILSYVHGSTELLGLQ 265 (578)
Q Consensus 196 ~DlAlLkv~~~-~~~~~~~~l~l~~~-~~~g~~V~~iG~p~g~~~--------~sv~~G~Is~~~~~~~~~~~~~~~~i~ 265 (578)
+|||||+++.+ .+...+.|+.|... ...++.++++||...... ..+...+++...+...........+|+
T Consensus 86 ~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~C 165 (227)
T 2psx_A 86 NDLMLIKLNRRIRPTKDVRPINVSSHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQIDDTMFC 165 (227)
T ss_dssp TCCEEEEESSCCCCCSSSCCCCBCSSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEBCCHHHHHHHSTTTCCTTEEE
T ss_pred CCEEEEEeCCCCCCCCceeeeECCCCCCCCCCEEEEEeCcccCCCCCCCCchheEEEEEecCHhHhhhhcCCCCCCCEEc
Confidence 69999999976 34456788888753 345889999998643211 112222232222211111111123455
Q ss_pred Ee----cCCCCCCccceEEccCCeEEEEEecc-ccccccCCceeeecchhHHHHHHHHHH
Q 008087 266 ID----AAINSGNSGGPAFNDKGKCVGIAFQS-LKHEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 266 ~d----a~i~~G~SGGPlvn~~G~vVGI~~~~-~~~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
.. ...|.|+|||||+. ++.++||++.. ..-......+....+...+.++++..+
T Consensus 166 a~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~ 224 (227)
T 2psx_A 166 AGDKAGRDSCQGDSGGPVVC-NGSLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQ 224 (227)
T ss_dssp ECCSTTCBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEEEGGGCHHHHHHHHH
T ss_pred ccCCCCCccCCCCCCcceee-CCEEEEEEeecCCCCCCCCCCcEEEEHHHhHHHHHHHHh
Confidence 43 35789999999997 57999999874 221112234566777777777766543
No 58
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2
Probab=99.42 E-value=2e-12 Score=127.44 Aligned_cols=183 Identities=16% Similarity=0.135 Sum_probs=106.0
Q ss_pred CCCCCccccCCC--cceEEEEEEEcCCEEEecccccCCCceEEEEEcC--------CCcEEEEEEEEEcC----------
Q 008087 135 PNFSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRG--------SDTKYLATVLAIGT---------- 194 (578)
Q Consensus 135 ~~~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~--------~g~~~~a~vv~~d~---------- 194 (578)
....+||+.... ....|+|.+|++.||||+|||+.. .+.|.+.. .+..+..+-+..++
T Consensus 11 ~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~--~~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~y~~~~~~~~ 88 (240)
T 1sgf_A 11 CENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYND--KYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEH 88 (240)
T ss_dssp --CCCTTEEEEECTTSCCEEEEECSSSEEEECGGGCCS--CCEEEECC----C-CTTCEEEEEEEEEECTTSCGGGC---
T ss_pred CCCCcCCEEEEEeCCCeEEEEEEecCCEEEECHHhCCC--CceEEeCCcccccCCCCceEEEEEEEEcCCCCcccccccc
Confidence 344566765442 235799999999999999999974 34455421 12233333333332
Q ss_pred --------CCCEEEEEEeeC-CCCCCeeeEEcCCC-CCCCCcEEEEeecCCCCc--------ceEEEeEEeceeeeeecC
Q 008087 195 --------ECDIAMLTVEDD-EFWEGVLPVEFGEL-PALQDAVTVVGYPIGGDT--------ISVTSGVVSRIEILSYVH 256 (578)
Q Consensus 195 --------~~DlAlLkv~~~-~~~~~~~~l~l~~~-~~~g~~V~~iG~p~g~~~--------~sv~~G~Is~~~~~~~~~ 256 (578)
.+|||||+++.+ .+...+.|+.|... ...|+.+++.||...... ..+..-+++...+.....
T Consensus 89 ~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~ 168 (240)
T 1sgf_A 89 TPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHE 168 (240)
T ss_dssp -CCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCCSCCCTTCEEEEC-------C---------CEEEEEECTHHHHTTCS
T ss_pred cccccCCCCCceEEEEeCCcCcCCCcccccCCCCCCCCCCCEEEEEecCCCCCCCCCCCccccEEeeeEeCHHHhhhhhC
Confidence 469999999976 34456788888753 356889999998643211 122333343332221111
Q ss_pred CceeeeEEEEe-----cCCCCCCccceEEccCCeEEEEEecccc-ccccCCceeeecchhHHHHHHHHHH
Q 008087 257 GSTELLGLQID-----AAINSGNSGGPAFNDKGKCVGIAFQSLK-HEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 257 ~~~~~~~i~~d-----a~i~~G~SGGPlvn~~G~vVGI~~~~~~-~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
......+++.. ...|.|+|||||+. +|.++||++.... -......+....+...+.++++..+
T Consensus 169 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~GI~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~ 237 (240)
T 1sgf_A 169 MKVTDAMLCAGEMDGGSYTCEHDSGGPLIC-DGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMA 237 (240)
T ss_dssp SBCCTTEEEEEECSSSEEECCCCTTCEEEE-TTEEEEEECCCCSSCCCSSCCEEEEESGGGHHHHHHHHH
T ss_pred CCcCCCeEeEccCCCCCCCCCCCCcCcEEE-ccEEEEEEEECCCCCCCCCCCeEEEeHHHHHHHHHHHHh
Confidence 11111234442 24689999999998 6899999987421 1112234567778888888877654
No 59
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Probab=99.42 E-value=3.2e-12 Score=124.63 Aligned_cols=176 Identities=15% Similarity=0.143 Sum_probs=109.2
Q ss_pred CCCCccccCCC--cceEEEEEEEcCCEEEecccccCCC--ceEEEEEcCC-----C----cEEEEEEEEEc------CCC
Q 008087 136 NFSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHY--TQVKLKKRGS-----D----TKYLATVLAIG------TEC 196 (578)
Q Consensus 136 ~~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~--~~i~V~~~~~-----g----~~~~a~vv~~d------~~~ 196 (578)
...+||+.... ....|+|.+|++.||||+|||+.+. ..+.|.+... . ..+..+-+..+ ..+
T Consensus 9 ~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~v~~i~~h~y~~~~~~~ 88 (225)
T 1a7s_A 9 PRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSENGYDPQQNLN 88 (225)
T ss_dssp TTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGC----CCSEEEEESCSSTTSCCTTTCEEEEEEEEECSSCBTTTTBS
T ss_pred CCCCCcEEEEecCCCcEEEEEEeeCCEEEEchhccCCCCCCceEEEEeeeECCCCCCcceeEEeEEEEecccccCCCCcC
Confidence 34566665443 2357999999999999999999753 4577777321 1 23333333332 347
Q ss_pred CEEEEEEeeC-CCCCCeeeEEcCCCC---CCCCcEEEEeecCCCCc-------ceEEEeEEeceeeeeecCCceeeeEEE
Q 008087 197 DIAMLTVEDD-EFWEGVLPVEFGELP---ALQDAVTVVGYPIGGDT-------ISVTSGVVSRIEILSYVHGSTELLGLQ 265 (578)
Q Consensus 197 DlAlLkv~~~-~~~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~~-------~sv~~G~Is~~~~~~~~~~~~~~~~i~ 265 (578)
|||||+++.+ .+...+.++.|.... ..++.+++.||...... ..+..-+++...+.. .+++
T Consensus 89 DIALl~L~~~~~~~~~v~pi~L~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~--------~~~C 160 (225)
T 1a7s_A 89 DLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRP--------NNVC 160 (225)
T ss_dssp CCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESCCSSTTCCCCSSCEEEEEEECCGGGSCT--------TEEE
T ss_pred CEEEEEcCCcccCCCceeEEEcCCCcCCCCCCCEEEEEeCCcCCCCCCcccccceeeeEECCHHHhcc--------CceE
Confidence 9999999976 344457788776532 35889999998753211 112222222222211 2344
Q ss_pred E-----ecCCCCCCccceEEccCCeEEEEEeccccccccCCceeeecchhHHHHHHHHHHc
Q 008087 266 I-----DAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEKN 321 (578)
Q Consensus 266 ~-----da~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~~ 321 (578)
. ....|.|+|||||+.. |.++||++..... -..+.+....+...+.++++..+.
T Consensus 161 a~~~~~~~~~C~GDSGgPl~~~-g~l~Gi~S~g~~~-C~~~p~vyt~V~~~~~WI~~~~~~ 219 (225)
T 1a7s_A 161 TGVLTRRGGICNGDGGTPLVCE-GLAHGVASFSLGP-CGRGPDFFTRVALFRDWIDGVLNN 219 (225)
T ss_dssp EECSSSSCBCCTTCTTCEEEET-TEEEEEEEEECSS-TTSSCEEEEEGGGGHHHHHHHHHS
T ss_pred EeccCCCCCcccCCCcchheeC-CEEEEEEEEccCC-cCCCCcEEEEhHHhHHHHHHHhcC
Confidence 3 2367899999999985 7999999875211 111256677888888888877654
No 60
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A*
Probab=99.42 E-value=2.2e-12 Score=125.20 Aligned_cols=180 Identities=14% Similarity=0.138 Sum_probs=106.4
Q ss_pred CCCCccccCCC--cceEEEEEEEcCCEEEecccccCCC--ceEEEEEcCC--------CcEEEEEEEEEc------CCCC
Q 008087 136 NFSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHY--TQVKLKKRGS--------DTKYLATVLAIG------TECD 197 (578)
Q Consensus 136 ~~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~--~~i~V~~~~~--------g~~~~a~vv~~d------~~~D 197 (578)
...+||+.... ....|+|.+|++.||||+|||+.+. ..+.|.+... ...+..+-+..+ ..+|
T Consensus 9 ~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h~y~~~~~~~D 88 (218)
T 2z7f_E 9 PHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGYDPVNLLND 88 (218)
T ss_dssp TTSSTTEEEEEETTEEEEEEEEEETTEEEECHHHHTTSCGGGCEEEESCSBTTSCCTTCEEEEEEEEEESCCBTTTTBSC
T ss_pred CCccCcEEEEEeCCCcEEEEEEccCCEEEEcHHhcCCCCcCcEEEEEeceecCCCCCceEEEEEEEEEccCCCCCCCCCC
Confidence 34566665432 2357999999999999999999864 3577777321 123443333333 3479
Q ss_pred EEEEEEeeC-CCCCCeeeEEcCCCC---CCCCcEEEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEE-----ec
Q 008087 198 IAMLTVEDD-EFWEGVLPVEFGELP---ALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQI-----DA 268 (578)
Q Consensus 198 lAlLkv~~~-~~~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~-----da 268 (578)
||||+++.+ .+...+.|+.|.... ..+..++++||........ ....+........ .......+++. ..
T Consensus 89 IALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~v~GwG~~~~~~~-~~~~l~~~~~~~~-~~~C~~~~~Ca~~~~~~~ 166 (218)
T 2z7f_E 89 IVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRG-IASVLQELNVTVV-TSLCRRSNVCTLVRGRQA 166 (218)
T ss_dssp CEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCEEEEEESSBCSSSCC-BCSBCEEEEEEEE-CTTCCTTSEEEECTTSCC
T ss_pred EEEEEECCcCcCCCceeccCcCCCCCCCCCCCEEEEEEeCCCCCCCC-ccchheEeeeEEe-hhHcCcceeeeccCCCCC
Confidence 999999976 344567888887533 3578899999865322100 0011111111111 11000012333 24
Q ss_pred CCCCCCccceEEccCCeEEEEEecccc-ccccCCceeeecchhHHHHHHHH
Q 008087 269 AINSGNSGGPAFNDKGKCVGIAFQSLK-HEDVENIGYVIPTPVIMHFIQDY 318 (578)
Q Consensus 269 ~i~~G~SGGPlvn~~G~vVGI~~~~~~-~~~~~~~~~aiPi~~i~~~l~~l 318 (578)
..|.|+|||||+. +|.++||++...+ -......+....+...+.++++.
T Consensus 167 ~~C~GDSGgPl~~-~~~l~Gi~S~~~g~C~~~~~p~vyt~V~~~~~WI~~~ 216 (218)
T 2z7f_E 167 GVCFGDSGSPLVC-NGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSI 216 (218)
T ss_dssp BCCTTCTTCEEEE-TTEEEEEEEEESSSTTCSSSCEEEEEGGGGHHHHHHH
T ss_pred eeCCCcCCCceEE-ccEEEEEEEeCCccCCCCCCCeEEEEHHHhHHHHHHH
Confidence 6789999999997 6899999987221 11112245667777777777654
No 61
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Probab=99.41 E-value=4.4e-12 Score=123.84 Aligned_cols=166 Identities=17% Similarity=0.155 Sum_probs=103.5
Q ss_pred eEEEEEEEcCCEEEecccccCCCceEEEEEcCC--------CcEEEEEEEEEcC-------CCCEEEEEEeeC-CCCCCe
Q 008087 149 SSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGS--------DTKYLATVLAIGT-------ECDIAMLTVEDD-EFWEGV 212 (578)
Q Consensus 149 ~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~--------g~~~~a~vv~~d~-------~~DlAlLkv~~~-~~~~~~ 212 (578)
..|+|.+|++.||||+|||+.+ .+.|++... .+.+..+-+..++ .+|||||+++.+ .+...+
T Consensus 27 ~~CgGtLI~~~~VLTAAHC~~~--~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v 104 (227)
T 1iau_A 27 KRCGGFLIRDDFVLTAAHCWGS--SINVTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAV 104 (227)
T ss_dssp EEEEEEEEETTEEEECGGGCCS--EEEEEESCSBTTSCCTTCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTB
T ss_pred eEEEEEEEcCCEEEECHHhCCC--ceEEEEccccccCCCCccEEEEEEEEECCCCCCCCCCCCCeEEEEECCcccCCCce
Confidence 5799999999999999999975 466666321 2334444445554 369999999976 344567
Q ss_pred eeEEcCCCC---CCCCcEEEEeecCCCC-------cceEEEeEEeceeeeeecCCcee-eeEEEEe-----cCCCCCCcc
Q 008087 213 LPVEFGELP---ALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILSYVHGSTE-LLGLQID-----AAINSGNSG 276 (578)
Q Consensus 213 ~~l~l~~~~---~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~~~~~~~~-~~~i~~d-----a~i~~G~SG 276 (578)
.|+.|.... ..|+.+++.||..... ...+..-+++...+......... ..++++. ...|.|+||
T Consensus 105 ~picLp~~~~~~~~g~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSG 184 (227)
T 1iau_A 105 QPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTSFKGDSG 184 (227)
T ss_dssp CCCCCCCTTCCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEBCCHHHHHHHTTTTCCTTTEEEESCTTSCCBCCTTCTT
T ss_pred ecccCCCCCCCCCCCCEEEEEEcccCCCCCCcCceeeEeeeeeechHHhhhHhccccCCCcEEEeECCCCCCeeeecCCC
Confidence 888887533 3588999999864321 11122222322222111111111 1145542 357889999
Q ss_pred ceEEccCCeEEEEEeccccccccCCceeeecchhHHHHHHHHH
Q 008087 277 GPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 277 GPlvn~~G~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
|||+. +|.++||++..-. .....+....+.....++++..
T Consensus 185 gPL~~-~~~l~Gi~S~gc~--~~~~p~vyt~v~~~~~WI~~~~ 224 (227)
T 1iau_A 185 GPLVC-NKVAQGIVSYGRN--NGMPPRACTKVSSFVHWIKKTM 224 (227)
T ss_dssp SEEEE-TTEEEEEEEEECT--TSCSCEEEEEGGGGHHHHHHHH
T ss_pred chheE-eeEEEEEEeEecC--CCCCCeEEEEHHHHHHHHHHHH
Confidence 99998 5799999987421 2223456677777777776654
No 62
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Probab=99.41 E-value=4.6e-12 Score=125.29 Aligned_cols=195 Identities=17% Similarity=0.144 Sum_probs=116.3
Q ss_pred CcEEEEeeeeCCCCCCccccCCC---cceEEEEEEEcCCEEEecccccCCCceEEEEEcC--------CCcEEEEEEEEE
Q 008087 124 AVVKVFCVHTEPNFSLPWQRKRQ---YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRG--------SDTKYLATVLAI 192 (578)
Q Consensus 124 sVV~I~~~~~~~~~~~p~~~~~~---~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~--------~g~~~~a~vv~~ 192 (578)
.+-+|..........+||+.... ....|+|.+|++.||||+|||+.+. ...|.+.. ..+.+...-+..
T Consensus 12 ~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~~-~~~v~~G~~~~~~~~~~~~~~~v~~i~~ 90 (245)
T 1t8o_A 12 GLSRIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVTT-SDVVVAGEFDQGSSSEKIQKLKIAKVFK 90 (245)
T ss_dssp ----CBTCEECCTTSSTTEEEEECTTCCEEEEEEEEETTEEEECGGGCCCT-TSEEEESCSBTTCSSSCCEEEEEEEEEE
T ss_pred CCCceECCEECCCCCCCceEEEEcCCCCeEEEEEEeeCCEEEEcHHhCcCC-CcEEEEeeeecCCCCCCcEEEEEEEEEe
Confidence 34456666666666778876543 2357999999999999999999763 34455521 122344444445
Q ss_pred cC-------CCCEEEEEEeeC-CCCCCeeeEEcCCCC---CCCCcEEEEeecCCCC--------cceEEEeEEeceeeee
Q 008087 193 GT-------ECDIAMLTVEDD-EFWEGVLPVEFGELP---ALQDAVTVVGYPIGGD--------TISVTSGVVSRIEILS 253 (578)
Q Consensus 193 d~-------~~DlAlLkv~~~-~~~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~--------~~sv~~G~Is~~~~~~ 253 (578)
++ .+|||||+++.+ .+...+.|+.|.... ..++.+++.||..... ...+..-+++...+..
T Consensus 91 hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~ 170 (245)
T 1t8o_A 91 NSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKK 170 (245)
T ss_dssp CTTCCTTTCCSCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSCC--CCCCSBCEEEEEEEECHHHHHH
T ss_pred CCCCCCCCCCCCEEEEEECCCCcCCCceeeeECCCCccCCCCCCEEEEEEeCCCCCCCCCCcchheEEEEeeEcchhhhH
Confidence 44 469999999986 344567888886532 3578999999864311 1122233333322221
Q ss_pred ecCCceeeeEEEEe---cCCCCCCccceEEcc-CC--eEEEEEeccccccccCCceeeecchhHHHHHHHHH
Q 008087 254 YVHGSTELLGLQID---AAINSGNSGGPAFND-KG--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 254 ~~~~~~~~~~i~~d---a~i~~G~SGGPlvn~-~G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
.........+|+.. ...|.|+|||||+.. +| .++||++....-......+...-+...+.++++..
T Consensus 171 ~~~~~~~~~~~Ca~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~c~~~~~p~vyt~V~~~~~WI~~~~ 242 (245)
T 1t8o_A 171 YWGTKIKDAMICAGASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 242 (245)
T ss_dssp HHGGGCCTTEEEEECSSCBCCTTCTTCEEEEEETTEEEEEEEEEECCTTCCTTSEEEEEEGGGTHHHHHHHH
T ss_pred hhcCcCCCceEEccCCCCccCcccCcCCEEEEECCEEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHH
Confidence 11111111234442 357899999999965 45 79999987542212233456677777777776654
No 63
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Probab=99.40 E-value=1.1e-11 Score=121.95 Aligned_cols=183 Identities=11% Similarity=0.115 Sum_probs=112.6
Q ss_pred CCccccCCC--cceEEEEEEEcCCEEEecccccCCC--ceEEEEEcCC----------CcEEEEEEEEEcC-CCCEEEEE
Q 008087 138 SLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHY--TQVKLKKRGS----------DTKYLATVLAIGT-ECDIAMLT 202 (578)
Q Consensus 138 ~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~--~~i~V~~~~~----------g~~~~a~vv~~d~-~~DlAlLk 202 (578)
.+||+.... ....|+|.+|++.||||+|||+.+. ..+.|.+... ...+..+-+.+++ .+|||||+
T Consensus 10 ~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~~~~~p~~~DiALl~ 89 (240)
T 1si5_H 10 NIGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEGSDLVLMK 89 (240)
T ss_dssp CCTTEEEEEESSSEEEEEEEEETTEEEEEGGGCSSSCGGGEEEEESCSBSSCSTTTTTCEEEEEEEEEECSSTTCEEEEE
T ss_pred CCCeEEEEEeCCCeEEEEEEeeCCEEEEhHHhcCCCCCccEEEEEeeeecCCCCCCCcceEEEEEEEEcCCCCCcEEEEE
Confidence 445554332 2357999999999999999999754 4677777311 1223333333444 68999999
Q ss_pred EeeC-CCCCCeeeEEcCCCC---CCCCcEEEEeecCCCC------cceEEEeEEeceeeeeecCCc--eeeeEEEEe---
Q 008087 203 VEDD-EFWEGVLPVEFGELP---ALQDAVTVVGYPIGGD------TISVTSGVVSRIEILSYVHGS--TELLGLQID--- 267 (578)
Q Consensus 203 v~~~-~~~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~------~~sv~~G~Is~~~~~~~~~~~--~~~~~i~~d--- 267 (578)
++.+ .+...+.|+.|.... ..++.++++||..... ...+..-+++...+....... ....+|+..
T Consensus 90 L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~ 169 (240)
T 1si5_H 90 LARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLINYDGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEK 169 (240)
T ss_dssp ESSCCCCSSSCCCCBCCCTTCCCCTTCEEEEEESSCCCCSSCCCBCEEEEEEEECGGGTCC-------CCTTEEEEECSS
T ss_pred ECCccccCCceeccCcCCcCCCCCCCCEEEEEEeCCCCCCCCCCeeEEEEEeecCHHHhhhhhcCCccCCCCEEeecCCC
Confidence 9976 344567888887532 3478899999864321 122333444433332211111 111244442
Q ss_pred --cCCCCCCccceEEccCC---eEEEEEeccccccccCCceeeecchhHHHHHHHHHH
Q 008087 268 --AAINSGNSGGPAFNDKG---KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 268 --a~i~~G~SGGPlvn~~G---~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
...|.|+|||||+...+ .++||++....-......+.+..+...+.++++...
T Consensus 170 ~~~~~C~GDSGgPL~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~ 227 (240)
T 1si5_H 170 IGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIIL 227 (240)
T ss_dssp SCCBCCTTCTTCEEEEECSSSEEEEEEECSCSCSSCTTCCEEEEEGGGGHHHHHHHHS
T ss_pred CCCEeccCCCCCcEEEEECCcEEEEEEEEECCCCCCCCCCcEEEEHHHHHHHHHHHHh
Confidence 35788999999997543 899999875432122345667788888888877664
No 64
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2
Probab=99.40 E-value=6.9e-12 Score=123.66 Aligned_cols=171 Identities=15% Similarity=0.089 Sum_probs=106.4
Q ss_pred eEEEEEEEcCCEEEecccccCCCceEEEEEcCC--------CcEEEEEEEEEcC-------C--CCEEEEEEeeC-CCCC
Q 008087 149 SSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGS--------DTKYLATVLAIGT-------E--CDIAMLTVEDD-EFWE 210 (578)
Q Consensus 149 ~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~--------g~~~~a~vv~~d~-------~--~DlAlLkv~~~-~~~~ 210 (578)
..|+|.+|++.||||+|||+.....+.|.+... ...+..+-+..++ . +|||||+++.+ .+..
T Consensus 28 ~~CgGtLI~~~~VLTAAHC~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~v~~~~ 107 (241)
T 1bru_P 28 HTCGGTLVDQSWVLTAAHCISSSRTYRVVLGRHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTD 107 (241)
T ss_dssp EEEEEEEEETTEEEECGGGCCTTSCEEEEESCSBSSSCCTTCEEEEEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCCS
T ss_pred eEEEeEEeeCCEEEEcHHhcccCCceEEEEEcccccCCCCccEEEEEEEEEECCCCCCCCCCCCCcEEEEEeCCCcccCC
Confidence 579999999999999999998556788887321 2334444444543 2 79999999976 3445
Q ss_pred CeeeEEcCCCC---CCCCcEEEEeecCCCC-------cceEEEeEEeceeeeee-cCC-ceeeeEEEEe----cCCCCCC
Q 008087 211 GVLPVEFGELP---ALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILSY-VHG-STELLGLQID----AAINSGN 274 (578)
Q Consensus 211 ~~~~l~l~~~~---~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~~-~~~-~~~~~~i~~d----a~i~~G~ 274 (578)
.+.|+.|.... ..++.+++.||..... ...+..-+++...+... ..+ .....+|+.. ...|.|+
T Consensus 108 ~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~C~GD 187 (241)
T 1bru_P 108 KIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAGGDGIISSCNGD 187 (241)
T ss_dssp SCCCCBCCCTTCCCCTTCEEEEEESCCSSTTSCCCSBCEEEEEEEECHHHHTSTTTTGGGCCTTEEEECCSSSSBCCTTC
T ss_pred ccCCcccCCCcCCCCCCCEEEEEEccccCCCCCCCccceeCEEEEecHHHhCcccccCCcCCCceEeecCCCCCccCCCC
Confidence 67888886532 3478899999864311 11233334443333211 011 1112345553 3578999
Q ss_pred ccceEEcc--CC--eEEEEEeccc--cccccCCceeeecchhHHHHHHHHH
Q 008087 275 SGGPAFND--KG--KCVGIAFQSL--KHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 275 SGGPlvn~--~G--~vVGI~~~~~--~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
|||||+.. +| .++||++... .-......+...-+...+.++++..
T Consensus 188 SGgPL~~~~~~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~i 238 (241)
T 1bru_P 188 SGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVI 238 (241)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHH
T ss_pred CCCcEEEECCCCCEEEEEEEEEcCCCCCCCCCCCcEEEEHHHhHHHHHHHH
Confidence 99999964 46 8999998743 1111123455666777777776654
No 65
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Probab=99.40 E-value=2e-12 Score=126.26 Aligned_cols=182 Identities=18% Similarity=0.164 Sum_probs=113.0
Q ss_pred CCCCccccCCC--cceEEEEEEEcCCEEEecccccCCCceEEEEEcCC--------CcEEEEEEEEEcC-------CCCE
Q 008087 136 NFSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGS--------DTKYLATVLAIGT-------ECDI 198 (578)
Q Consensus 136 ~~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~--------g~~~~a~vv~~d~-------~~Dl 198 (578)
...+||+.... ....|+|.+|++.||||+|||+.+...+.|.+... ...+..+-+..++ .+||
T Consensus 9 ~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~Di 88 (226)
T 1azz_A 9 PNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDGAGFVDVVLGAHNIREDEATQVTIQSTDFTVHENYNSFVISNDI 88 (226)
T ss_dssp TTSSTTEEEEEETTTEEEEEEEEETTEEEECHHHHTTCSCEEEEESCSBSSSCCTTCEEEEECCEEECTTCBTTTTBSCC
T ss_pred CCCcCCEEEEEECCcEEEEEEEecCCEEEEhHHhcCCCCceEEEEcceEcCCCCCccEEEEEEEEEECCCCCCCCCCCce
Confidence 34566665442 24589999999999999999999877888887321 1223333334443 4799
Q ss_pred EEEEEeeC-CCCCCeeeEEcCCC-CCCCCcEEEEeecCCCCc--------ceEEEeEEeceeeeeecCCceeeeEEEEe-
Q 008087 199 AMLTVEDD-EFWEGVLPVEFGEL-PALQDAVTVVGYPIGGDT--------ISVTSGVVSRIEILSYVHGSTELLGLQID- 267 (578)
Q Consensus 199 AlLkv~~~-~~~~~~~~l~l~~~-~~~g~~V~~iG~p~g~~~--------~sv~~G~Is~~~~~~~~~~~~~~~~i~~d- 267 (578)
|||+++.+ .+...+.|+.|... ...|+.+++.||...... ..+...+++...+..... .....+++..
T Consensus 89 ALl~L~~~~~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~-~~~~~~~Ca~~ 167 (226)
T 1azz_A 89 AVIRLPVPVTLTAAIATVGLPSTDVGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYG-IVTDGNICIDS 167 (226)
T ss_dssp EEEECSSCCCCCSSSCCCBCCSSCCCTTCEEEEEESSCSSTTCSSSCSBCEECCEEEECHHHHHHHHS-CCCTTEEEECC
T ss_pred EEEEECCccccCCCcccccCCCCCCCCCCEEEEEeCCccCCCCCCCCchhEEeeEEEEChhHhhhhhC-cCCCceEeecC
Confidence 99999976 34456788888753 356889999998643210 112223333322221111 1111245543
Q ss_pred ---cCCCCCCccceEEccCCeEEEEEecccccc-ccCCceeeecchhHHHHHHHHH
Q 008087 268 ---AAINSGNSGGPAFNDKGKCVGIAFQSLKHE-DVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 268 ---a~i~~G~SGGPlvn~~G~vVGI~~~~~~~~-~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
...|.|+|||||+. +|.++||++...... .....+....+...+.++++..
T Consensus 168 ~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~~C~~~~p~vyt~V~~~~~WI~~~~ 222 (226)
T 1azz_A 168 TGGKGTCNGDSGGPLNY-NGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQT 222 (226)
T ss_dssp TTTCBCCTTCTTCEEEE-TTEEEEEEEEEETTCTTSCCCEEEEESGGGHHHHHHHH
T ss_pred CCCCccCCCCCCcceEE-CCEEEEEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHh
Confidence 35789999999995 789999998754211 1123455677777777777654
No 66
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*
Probab=99.40 E-value=5.3e-12 Score=123.61 Aligned_cols=183 Identities=15% Similarity=0.109 Sum_probs=111.7
Q ss_pred CCCccccCCC----cceEEEEEEEcCCEEEecccccCCCceEEEEEcCC-------CcEE--EEEEEEEcC-------CC
Q 008087 137 FSLPWQRKRQ----YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGS-------DTKY--LATVLAIGT-------EC 196 (578)
Q Consensus 137 ~~~p~~~~~~----~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~-------g~~~--~a~vv~~d~-------~~ 196 (578)
..+||+.... ....|+|.+|++.||||+|||+... +.|.+... .... ....+..++ .+
T Consensus 10 ~~~Pw~v~l~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~--~~v~~g~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 87 (234)
T 3s9c_A 10 NEHPFLVALYTSASSTIHCAGALINREWVLTAAHCDRRN--IRIKLGMHSKNIRNEDEQIRVPRGKYFCLNTKFPNGLDK 87 (234)
T ss_dssp TSCTTEEEEEETTEEEEEEEEEEEETTEEEECGGGCCTT--EEEEESCSSSSSCCTTCEEECEEEEECCSSCSSTTCGGG
T ss_pred CCCCeEEEEEECCCCcEEEeeEEeeCCEEEEchhhcCCC--ceEEEeecccccccCCcceEEeeeEEEeCCCCCCCCCcC
Confidence 3455554432 2346999999999999999999754 45555211 1111 122222233 35
Q ss_pred CEEEEEEeeC-CCCCCeeeEEcCCC-CCCCCcEEEEeecCCCC------cceEEEeEEeceeeeeecC-CceeeeEEEEe
Q 008087 197 DIAMLTVEDD-EFWEGVLPVEFGEL-PALQDAVTVVGYPIGGD------TISVTSGVVSRIEILSYVH-GSTELLGLQID 267 (578)
Q Consensus 197 DlAlLkv~~~-~~~~~~~~l~l~~~-~~~g~~V~~iG~p~g~~------~~sv~~G~Is~~~~~~~~~-~~~~~~~i~~d 267 (578)
|||||+++.+ .+...+.|+.|... ...|+.++++||..... ...+...+++...+..... ......+++..
T Consensus 88 DIALl~L~~~v~~~~~v~pi~L~~~~~~~~~~~~v~GwG~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~ 167 (234)
T 3s9c_A 88 DIMLIRLRRPVTYSTHIAPVSLPSRSRGVGSRCRIMGWGKISTTTYPDVPHCTNIFIVKHKWCEPLYPWVPADSRTLCAG 167 (234)
T ss_dssp CCEEEEESSCCCCBTTBCCCBCCSSCCCTTCEEEEEESSCSBTTBCCSSCEEEEEEEECGGGTTTTCTTSCTTSSEEEEE
T ss_pred ceEEEEECCccccCCcccccccCCCCCCCCCeEEEEeeCCCCCCCCCccccccceEecCHHHhhhcccCCCCCcceEEee
Confidence 9999999976 34456788888763 35689999999864311 1233344444433322111 11112245542
Q ss_pred -----cCCCCCCccceEEccCCeEEEEEecccc-ccccCCceeeecchhHHHHHHHHHHcC
Q 008087 268 -----AAINSGNSGGPAFNDKGKCVGIAFQSLK-HEDVENIGYVIPTPVIMHFIQDYEKNG 322 (578)
Q Consensus 268 -----a~i~~G~SGGPlvn~~G~vVGI~~~~~~-~~~~~~~~~aiPi~~i~~~l~~l~~~g 322 (578)
...|.|+|||||+. +++++||++.... -......+....+...+.++++..+..
T Consensus 168 ~~~~~~~~C~GDSGgPl~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i~~~ 227 (234)
T 3s9c_A 168 ILKGGRDTCHGDSGGPLIC-NGEMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSIIAGN 227 (234)
T ss_dssp CTTSSCBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHTC
T ss_pred cCCCCCccCCCCCCCeEEE-eCCcEEEEEEeCCCCCCCCCCcEEEEhHHhHHHHHHHHcCC
Confidence 35788999999998 5789999987542 111223466788888888888876643
No 67
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=99.40 E-value=2.8e-13 Score=117.74 Aligned_cols=97 Identities=23% Similarity=0.336 Sum_probs=79.9
Q ss_pred CceeccccCCcccccccChhhhhhhcccc-----CCCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccC
Q 008087 322 GAYTGFPLLGVEWQKMENPDLRVAMSMKA-----DQKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHG 395 (578)
Q Consensus 322 g~v~~~~~lGi~~~~~~~~~~~~~lgl~~-----~~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~ 395 (578)
|++. |+|||+.++.+ ++.+++.+++.. ...|++|..|.++|||++ ||++||+|++|||+++.++.+
T Consensus 1 G~v~-r~~lGi~~~~l-~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~------ 72 (113)
T 2pzd_A 1 GSHM-RRYIGVMMLTL-SPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAED------ 72 (113)
T ss_dssp -----CEECCEEEEEC-CHHHHHHHHHHCSSCCCCSSCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECCSHHH------
T ss_pred Cccc-ccEeEEEEEeC-CHHHHHHhccccccccCCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCHHH------
Confidence 4566 89999999999 899999999842 357999999999999999 999999999999999998766
Q ss_pred cchhHHHHHhccCCCCEEEEEEEECCEEEEEEEEeccc
Q 008087 396 ERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNITLATH 433 (578)
Q Consensus 396 ~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v~l~~~ 433 (578)
+...+.. ++.+.|+|.|+|+.+++.+++...
T Consensus 73 ----~~~~l~~---~~~v~l~v~R~g~~~~~~v~~~~~ 103 (113)
T 2pzd_A 73 ----VYEAVRT---QSQLAVQIRRGRETLTLYVTPEVT 103 (113)
T ss_dssp ----HHHHHHH---CSSEEEEEEETTEEEEEEECCEEC
T ss_pred ----HHHHHhC---CCeEEEEEEECCEEEEEEEEEeec
Confidence 4455543 688999999999998888877543
No 68
>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A
Probab=99.40 E-value=5.7e-12 Score=123.00 Aligned_cols=181 Identities=17% Similarity=0.209 Sum_probs=109.5
Q ss_pred CCCccccCCC--cceEEEEEEEcCCEEEecccccCCCc--eEEEEEcCC--------CcEEEEEEEEEcC-------CCC
Q 008087 137 FSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHYT--QVKLKKRGS--------DTKYLATVLAIGT-------ECD 197 (578)
Q Consensus 137 ~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~~--~i~V~~~~~--------g~~~~a~vv~~d~-------~~D 197 (578)
..+||+.... ....|+|.+|++.||||+|||+.+.. .+.|.+... .+.+...-+..++ .+|
T Consensus 10 ~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~D 89 (228)
T 2xw9_A 10 HARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHD 89 (228)
T ss_dssp TSCTTEEEEEETTEEEEEEEEEETTEEEECGGGGSSCTTCCEEEEESCSBSSSCCTTCEEEEEEEEEECTTCCTTCCTTC
T ss_pred CCCCcEEEEEECCCeEEEEEEEeCCEEEEcHHhCCCCCCCceEEEEcccccCCCCCcceEEEEEEEEeCCCCCCCCCCCc
Confidence 3455554432 23579999999999999999997543 678887321 2334444455554 369
Q ss_pred EEEEEEeeC-CCCCCeeeEEcCCC---CCCCCcEEEEeecCCCC-------cceEEEeEEeceeeeeecC--CceeeeEE
Q 008087 198 IAMLTVEDD-EFWEGVLPVEFGEL---PALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILSYVH--GSTELLGL 264 (578)
Q Consensus 198 lAlLkv~~~-~~~~~~~~l~l~~~---~~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~~~~--~~~~~~~i 264 (578)
||||+++.+ .+...+.|+.|... ...|+.+++.||..... ...+..-+++...+..... ......++
T Consensus 90 IAll~L~~~~~~~~~v~pi~l~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~ 169 (228)
T 2xw9_A 90 LLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLM 169 (228)
T ss_dssp CEEEEESSCCCCBTTBCCCCBCCSCCCCCTTC-CEEEESSCCSTTCCCCSBCEEEECCEECHHHHTSTTTTTTCCCTTEE
T ss_pred EEEEEeCCCcccCCCeeecccCCcccCCCCCCEEEEEEecccCCCCCCCchheEEEEEEcChhHhcCccccCCcccCCEE
Confidence 999999976 34445778877652 23578899999864321 1122233333322221111 11112244
Q ss_pred EEe---cCCCCCCccceEEccCCeEEEEEeccc-cccccCCceeeecchhHHHHHHHH
Q 008087 265 QID---AAINSGNSGGPAFNDKGKCVGIAFQSL-KHEDVENIGYVIPTPVIMHFIQDY 318 (578)
Q Consensus 265 ~~d---a~i~~G~SGGPlvn~~G~vVGI~~~~~-~~~~~~~~~~aiPi~~i~~~l~~l 318 (578)
+.. ...|.|+|||||+. +|.++||++... .-......+....+...+.++++.
T Consensus 170 Ca~~~~~~~C~GDsGgPL~~-~~~l~Gi~s~g~~~C~~~~~p~vyt~V~~~~~WI~~~ 226 (228)
T 2xw9_A 170 CAESNRRDSCKGDAGGPLVC-GGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSV 226 (228)
T ss_dssp EECCSSCBCCTTCTTCEEEE-TTEEEEEECCSCCCSSCTTSCEEEEEGGGGHHHHHHH
T ss_pred ecCCCCCccCCCCCcccEEE-CCEEEEEEeecCCcCCCCCCCcEEEEHHHHHHHHHHH
Confidence 542 35788999999998 589999998743 111112345667777777777664
No 69
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B
Probab=99.39 E-value=7.1e-12 Score=123.76 Aligned_cols=183 Identities=16% Similarity=0.147 Sum_probs=113.1
Q ss_pred CCCccccCCC---cceEEEEEEEcCCEEEecccccCC----------------CceEEEEEcC--------CCcEEEEEE
Q 008087 137 FSLPWQRKRQ---YSSSSSGFAIGGRRVLTNAHSVEH----------------YTQVKLKKRG--------SDTKYLATV 189 (578)
Q Consensus 137 ~~~p~~~~~~---~~~~GsGfvI~~g~ILT~aHvV~~----------------~~~i~V~~~~--------~g~~~~a~v 189 (578)
..+||+.... ....|+|.+|++.||||+|||+.. ...+.|.+.. ....+..+-
T Consensus 10 ~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~ 89 (251)
T 3gov_B 10 GTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDLLSPSDFKIILGKHWRLRSDENEQHLGVKH 89 (251)
T ss_dssp TSCTTEEEEEETTCCEEEEEEEETTTEEEECGGGGBCCCCTTSCCCCGGGBCCGGGEEEEESCCBSSSCCSSCEEECEEE
T ss_pred CCcCeEEEEeccCCCeeEEEEEecCCEEEECHhhccccccccccccccccccccccEEEEecceeccCCCCcceEeeeEE
Confidence 3455554332 235799999999999999999964 2457777732 123344444
Q ss_pred EEEcCC-------CCEEEEEEeeC-CCCCCeeeEEcCCCC-CCCCcEEEEeecCCCC------cceEEEeEEeceeeeee
Q 008087 190 LAIGTE-------CDIAMLTVEDD-EFWEGVLPVEFGELP-ALQDAVTVVGYPIGGD------TISVTSGVVSRIEILSY 254 (578)
Q Consensus 190 v~~d~~-------~DlAlLkv~~~-~~~~~~~~l~l~~~~-~~g~~V~~iG~p~g~~------~~sv~~G~Is~~~~~~~ 254 (578)
+..++. +|||||+++.+ .+...+.|+.|.... ..++.+++.||..... ...+...+++...+...
T Consensus 90 i~~hp~y~~~~~~~DIAll~L~~~~~~~~~v~picLp~~~~~~~~~~~v~GwG~~~~~~~~~~L~~~~~~~~~~~~C~~~ 169 (251)
T 3gov_B 90 TTLHPQYDPNTFENDVALVELLESPVLNAFVMPICLPEGPQQEGAMVIVSGWGKQFLQRFPETLMEIEIPIVDHSTCQKA 169 (251)
T ss_dssp EEECTTCBTTTTBTCCEEEEESSCCCCSSSCCCCBCCSSCCCTTCEEEEEECSCCTTSCCCSBCEEEEEEEECHHHHHHH
T ss_pred EEECCCCCCCCCCCCEEEEEeCCcccCCCceEEeECCCCCCCCCCEEEEEcCCCCCCCCCCccceEEeeEEECHHHhhhh
Confidence 555554 69999999876 344567788887533 4688999999865321 12233344443333211
Q ss_pred cC---CceeeeEEEEe-----cCCCCCCccceEEcc---CC--eEEEEEeccccccccCCceeeecchhHHHHHHHHH
Q 008087 255 VH---GSTELLGLQID-----AAINSGNSGGPAFND---KG--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 255 ~~---~~~~~~~i~~d-----a~i~~G~SGGPlvn~---~G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
.. ......+|+.. ...|.|+|||||+.. +| .++||++....-......+.+..+...+.++++..
T Consensus 170 ~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~ 247 (251)
T 3gov_B 170 YAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRVT 247 (251)
T ss_dssp TTTTTCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCSSCCEEEEETTTTHHHHHHHH
T ss_pred hhhccCCCCCCcEEecCCCCCCccCCCCCCCeEEeeeCCCCcEEEEEEEEECCCCCCCCCCEEEEEHHHhHHHHHHHh
Confidence 11 11112345552 467899999999964 34 69999987543222233466777777777777654
No 70
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A*
Probab=99.39 E-value=5.2e-12 Score=123.68 Aligned_cols=181 Identities=14% Similarity=0.115 Sum_probs=110.3
Q ss_pred CCCccccCCC-cceEEEEEEEcCCEEEecccccCCCceEEEEEcCC---------CcEEEEEEEEEcC-------CCCEE
Q 008087 137 FSLPWQRKRQ-YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGS---------DTKYLATVLAIGT-------ECDIA 199 (578)
Q Consensus 137 ~~~p~~~~~~-~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~---------g~~~~a~vv~~d~-------~~DlA 199 (578)
..+||+.... ....|+|.+|++.||||+|||+.+. +.|.+... .+.+..+-+..++ .+|||
T Consensus 10 ~~~Pw~v~l~~~~~~CgGsLIs~~~VLTAAHC~~~~--~~v~~G~~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DIA 87 (231)
T 2aiq_A 10 NEHRFLALVYANGSLCGGTLINQEWVLTARHCDRGN--MRIYLGMHNLKVLNKDALRRFPKEKYFCLNTRNDTIWDKDIM 87 (231)
T ss_dssp TSCTTEEEEEETTEEEEEEECSSSEEEECGGGCCSS--CEEEESCSCTTSCCTTCEEECEEEEECCSSCCSSSTTTTCCE
T ss_pred CCCCeEEEEEcCCCeEEEEEEeCCEEEEcHHcCCCC--CEEEEecccccccCCCceEEEEEEEEEECCCCCCCCCCCCEE
Confidence 3456655432 1247999999999999999999864 44554211 1123333333333 46999
Q ss_pred EEEEeeC-CCCCCeeeEEcCCC-CCCCCcEEEEeecCCCC--------cceEEEeEEeceeeeeecCCceeeeEEEEe--
Q 008087 200 MLTVEDD-EFWEGVLPVEFGEL-PALQDAVTVVGYPIGGD--------TISVTSGVVSRIEILSYVHGSTELLGLQID-- 267 (578)
Q Consensus 200 lLkv~~~-~~~~~~~~l~l~~~-~~~g~~V~~iG~p~g~~--------~~sv~~G~Is~~~~~~~~~~~~~~~~i~~d-- 267 (578)
||+++.+ .+...+.|+.|... ...++.++++||..... ...+..-+++...+...... ....+++..
T Consensus 88 Ll~L~~~v~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~-~~~~~~Ca~~~ 166 (231)
T 2aiq_A 88 LIRLNRPVRNSAHIAPLSLPSNPPSVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKG-LAATTLCAGIL 166 (231)
T ss_dssp EEEESSCCCCBTTBCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHHHHHHCTT-CCSSEEEEECT
T ss_pred EEEecCCCCCCCcEEeeECCCCCCCCCCEEEEEeCCccCCCCCccCchhhhccceecchhhhhhhhcC-CCcCcEEeccC
Confidence 9999976 34456788888753 35689999999864321 11223333433222211111 112344442
Q ss_pred ---cCCCCCCccceEEccCCeEEEEEecc-ccccccCCceeeecchhHHHHHHHHHHc
Q 008087 268 ---AAINSGNSGGPAFNDKGKCVGIAFQS-LKHEDVENIGYVIPTPVIMHFIQDYEKN 321 (578)
Q Consensus 268 ---a~i~~G~SGGPlvn~~G~vVGI~~~~-~~~~~~~~~~~aiPi~~i~~~l~~l~~~ 321 (578)
...|.|+|||||+. +|+++||++.. ..-......+....+...+.++++..+.
T Consensus 167 ~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~ 223 (231)
T 2aiq_A 167 EGGKDTCKGDSGGPLIC-NGQFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIISG 223 (231)
T ss_dssp TCSCBCCTTCTTCEEEE-TTEEEEEEEEECSSTTCTTCCEEEEEGGGGHHHHHHHHHT
T ss_pred CCCCcccCCcCCCcEEE-CCEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHcC
Confidence 35789999999998 58999999874 2111122346677888888888776553
No 71
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens}
Probab=99.39 E-value=7e-12 Score=123.18 Aligned_cols=181 Identities=17% Similarity=0.167 Sum_probs=110.6
Q ss_pred CCCCccccCCC--cceEEEEEEEcCCEEEecccccCCCceEEEEEcC--------CCcEEEEEEEEEcC-----------
Q 008087 136 NFSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRG--------SDTKYLATVLAIGT----------- 194 (578)
Q Consensus 136 ~~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~--------~g~~~~a~vv~~d~----------- 194 (578)
...+||+.... ....|+|.+|++.||||+|||+.+ .+.|.+.. ..+.+..+-+..++
T Consensus 9 ~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~--~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~~~ 86 (238)
T 1spj_A 9 QHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCISD--NYQLWLGRHNLFDDENTAQFVHVSESFPHPGFNMSLLENHT 86 (238)
T ss_dssp TTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCCS--SEEEEESCSBTTSCCTTCEEECEEEEEECTTSCGGGGCC--
T ss_pred CCCCCcEEEEEeCCCeeEEEEEecCCEEEEcHHhCCC--CceEEEEeccccCCCCCceEEEEEEEEcCCCcccccccccc
Confidence 34567766543 235799999999999999999975 35565521 12233333333333
Q ss_pred -------CCCEEEEEEeeCC--CCCCeeeEEcCC-CCCCCCcEEEEeecCCCC--------cceEEEeEEeceeeeeecC
Q 008087 195 -------ECDIAMLTVEDDE--FWEGVLPVEFGE-LPALQDAVTVVGYPIGGD--------TISVTSGVVSRIEILSYVH 256 (578)
Q Consensus 195 -------~~DlAlLkv~~~~--~~~~~~~l~l~~-~~~~g~~V~~iG~p~g~~--------~~sv~~G~Is~~~~~~~~~ 256 (578)
.+|||||+++.+. +...+.++.|.. ....|+.++++||..... ...+..-+++...+.....
T Consensus 87 ~~~~~~~~~DIALl~L~~~~~~~~~~v~pi~L~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~ 166 (238)
T 1spj_A 87 RQADEDYSHDLMLLRLTEPADTITDAVKVVELPTEEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKAHV 166 (238)
T ss_dssp CTTTCCCTTCCEEEEESSCCCCSSTTCCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECHHHHHHHCS
T ss_pred ccccccCCCCeEEEEECccccccCCceeeccCCCCCCCCCCEEEEEecCCCCCCCCCCcCcccEEEEeecCHHHhhhhcc
Confidence 3599999998763 445678888875 335689999999864311 1123334444333321111
Q ss_pred CceeeeEEEEe-----cCCCCCCccceEEccCCeEEEEEeccc-cccccCCceeeecchhHHHHHHHHH
Q 008087 257 GSTELLGLQID-----AAINSGNSGGPAFNDKGKCVGIAFQSL-KHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 257 ~~~~~~~i~~d-----a~i~~G~SGGPlvn~~G~vVGI~~~~~-~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
......++++. ...|.|+|||||+. +|.++||++.+. .-......+...-+...+.++++..
T Consensus 167 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i 234 (238)
T 1spj_A 167 QKVTDFMLCVGHLEGGKDTCVGDSGGPLMC-DGVLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTI 234 (238)
T ss_dssp SCCCTTEEEEECTTCSSBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHH
T ss_pred CCCCCCeEEeeCCCCCCCCCCCCCCCcEEE-cCEEEEEEEeCCCCCCCCCCCeEEEEHHHhHHHHHHHh
Confidence 11111245542 36789999999997 589999998752 1111123455677777777776654
No 72
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}
Probab=99.39 E-value=7.1e-12 Score=122.94 Aligned_cols=184 Identities=15% Similarity=0.114 Sum_probs=110.4
Q ss_pred CCCccccCCC----cceEEEEEEEcCCEEEecccccCCCceEEEEEcC-----CCcE--EEEEEEEEcC-------CCCE
Q 008087 137 FSLPWQRKRQ----YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRG-----SDTK--YLATVLAIGT-------ECDI 198 (578)
Q Consensus 137 ~~~p~~~~~~----~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~-----~g~~--~~a~vv~~d~-------~~Dl 198 (578)
..+||+.... ....|+|.+|++.||||+|||+.....+.+-... .... +..+.+..++ .+||
T Consensus 10 ~~~Pw~v~l~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~DI 89 (238)
T 4e7n_A 10 NEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCDRKNFRIKLGMHSKKVPNEDEQTRVPKEKFFCLSSKNYTLWDKDI 89 (238)
T ss_dssp TSCTTEEEEECTTTCCEEEEEEECSSSEEEECGGGCCSSCEEEESCSCSSSCCTTCEEECEEEEECSSTTCCCCSSSCCC
T ss_pred CCcCcEEEEEECCCCCEEEEEEEecCCEEEEhHHcCCCCCeEEeceeeccccCCCceeEeeeeeEEcCCCCCCCCCCCcE
Confidence 3455554321 3357999999999999999999754433332211 0111 1223332232 4699
Q ss_pred EEEEEeeC-CCCCCeeeEEcCCC-CCCCCcEEEEeecCCCC--------cceEEEeEEeceeeeeecC---CceeeeEEE
Q 008087 199 AMLTVEDD-EFWEGVLPVEFGEL-PALQDAVTVVGYPIGGD--------TISVTSGVVSRIEILSYVH---GSTELLGLQ 265 (578)
Q Consensus 199 AlLkv~~~-~~~~~~~~l~l~~~-~~~g~~V~~iG~p~g~~--------~~sv~~G~Is~~~~~~~~~---~~~~~~~i~ 265 (578)
|||+++.+ .+...+.|+.|... ...|+.++++||..... ...+...+++...+..... ......+++
T Consensus 90 ALl~L~~~v~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C 169 (238)
T 4e7n_A 90 MLIRLDSPVKNSKHIAPFSLPSSPPSVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPATSRTLC 169 (238)
T ss_dssp EEEEESSCCCCBTTBCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECGGGGTTTCGGGCCCSCCSEEE
T ss_pred EEEEeCCCccCCCceeeeeCCCCCCCCCCEEEEEECCCCCCCCCCCCccceEeeccccCHHHHhhhcccccCCCCCCeEE
Confidence 99999976 34456788888753 35689999999864311 1123344444333321111 111122445
Q ss_pred Ee-----cCCCCCCccceEEccCCeEEEEEecccc-ccccCCceeeecchhHHHHHHHHHHc
Q 008087 266 ID-----AAINSGNSGGPAFNDKGKCVGIAFQSLK-HEDVENIGYVIPTPVIMHFIQDYEKN 321 (578)
Q Consensus 266 ~d-----a~i~~G~SGGPlvn~~G~vVGI~~~~~~-~~~~~~~~~aiPi~~i~~~l~~l~~~ 321 (578)
.. ...|.|+|||||+. +++++||++.... -......+....+...+.++++..+.
T Consensus 170 a~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~ 230 (238)
T 4e7n_A 170 AGILEGGKDTCKGDSGGPLIC-NGQFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENIIAG 230 (238)
T ss_dssp EECTTCSCBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEEESGGGHHHHHHHHTT
T ss_pred eCCCCCCCccCCCCCCcceEE-CCEEEEEEEEeCCCCCCCCCCeEEEEhHHHHHHHHHHHhc
Confidence 42 35789999999997 6889999987542 11223346677888888888877653
No 73
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*
Probab=99.39 E-value=7.2e-12 Score=122.54 Aligned_cols=184 Identities=17% Similarity=0.128 Sum_probs=110.1
Q ss_pred CCCccccCC--CcceEEEEEEEcCCEEEecccccCCCceEEEEEcC------CCcE-EEEEEEEEcC-------CCCEEE
Q 008087 137 FSLPWQRKR--QYSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRG------SDTK-YLATVLAIGT-------ECDIAM 200 (578)
Q Consensus 137 ~~~p~~~~~--~~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~------~g~~-~~a~vv~~d~-------~~DlAl 200 (578)
..+||+... .....|+|.+|++.||||+|||+.....+.+-... +... ...+.+..++ .+||||
T Consensus 10 ~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~DIAL 89 (234)
T 3s69_A 10 NEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHCDNTNFQMKLGVHSKKVLNEDEQTRNPKEKFICPNKKNDEVLDKDIML 89 (234)
T ss_dssp TSCTTEEEEECSSCEEEEEEEEETTEEEECGGGCCSSCEEEESCCCSSSCCTTCEEECEEEEEECTTCCTTCTTSSCCEE
T ss_pred CCCceEEEEeeCCCeEEeEEEeeCCEEEEchhhCCCCceEEecccccccccCCcceeeceEEEECCCccCCCCCcccEEE
Confidence 345555433 22357999999999999999999754333332210 1111 1233333333 469999
Q ss_pred EEEeeC-CCCCCeeeEEcCC-CCCCCCcEEEEeecCCCC--------cceEEEeEEeceeeeeecC-CceeeeEEEE---
Q 008087 201 LTVEDD-EFWEGVLPVEFGE-LPALQDAVTVVGYPIGGD--------TISVTSGVVSRIEILSYVH-GSTELLGLQI--- 266 (578)
Q Consensus 201 Lkv~~~-~~~~~~~~l~l~~-~~~~g~~V~~iG~p~g~~--------~~sv~~G~Is~~~~~~~~~-~~~~~~~i~~--- 266 (578)
|+++.+ .+...+.|+.|.. ....|+.+++.||..... ...+...+++...+..... ......+++.
T Consensus 90 l~L~~~v~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~ 169 (234)
T 3s69_A 90 IKLDSRVSNSEHIVPLSLPSSPPSVGSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPELLTEYRTLCAGIL 169 (234)
T ss_dssp EEESSCCCCBTTBCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHHHHHHCTTCCTTSCEEEEECT
T ss_pred EeeCCcCCCCCcceeeecCCCCCCCCCEEEEEECCCCCCCCcCcccccceeEEeecCHHHHhhhcccccCCcceEeccCC
Confidence 999876 3445678888865 335689999999864321 1122333344332221111 1111123444
Q ss_pred --ecCCCCCCccceEEccCCeEEEEEecccc-ccccCCceeeecchhHHHHHHHHHHc
Q 008087 267 --DAAINSGNSGGPAFNDKGKCVGIAFQSLK-HEDVENIGYVIPTPVIMHFIQDYEKN 321 (578)
Q Consensus 267 --da~i~~G~SGGPlvn~~G~vVGI~~~~~~-~~~~~~~~~aiPi~~i~~~l~~l~~~ 321 (578)
....|.|+|||||+. +++++||++.+.. -......+...-+...+.++++..+.
T Consensus 170 ~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~ 226 (234)
T 3s69_A 170 EGGKDTCGGDSGGPLIC-NGQFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIAG 226 (234)
T ss_dssp TCSCBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHT
T ss_pred CCCCccCCCCCccceEE-cCEEEEEEEEcccccCCCCCCcEEeeHHHHHHHHHHHhcC
Confidence 246788999999997 5789999987542 11122346677888888888877654
No 74
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2
Probab=99.38 E-value=6.6e-12 Score=122.17 Aligned_cols=180 Identities=16% Similarity=0.149 Sum_probs=112.3
Q ss_pred CCCCccccCCC--cceEEEEEEEcCCEEEecccccCCC---ceEEEEEcC-----CCcEEEEEEEEEcC-------CCCE
Q 008087 136 NFSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHY---TQVKLKKRG-----SDTKYLATVLAIGT-------ECDI 198 (578)
Q Consensus 136 ~~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~---~~i~V~~~~-----~g~~~~a~vv~~d~-------~~Dl 198 (578)
...+||+.... ....|+|.+|++.||||+|||+.+. ..+.|.+.. +++.+..+-+..++ .+||
T Consensus 9 ~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DI 88 (222)
T 1eq9_A 9 VGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVGTNYLSESGDVYDVEDAVVNKNYDDFLLRNDV 88 (222)
T ss_dssp TTSCTTEEEEEETTEEEEEEEECSSSEEEECHHHHTTCSCGGGEEEEESCSBTTSCCEEEEEEEEEECTTCBTTTTBCCC
T ss_pred CCCcceEEEEEeCCCeEEEEEEeeCCEEEEhhhcCCCCCCCceEEEEECceecCCCCeEEEEEEEEECCCCCCCCCCCCE
Confidence 34566665432 2357999999999999999999763 467787732 23445555455554 4699
Q ss_pred EEEEEeeC-CCCCCeeeEEcCCCC--CCCCcEEEEeecCCCC-------cceEEEeEEeceeeeeecCCceeeeEEEEe-
Q 008087 199 AMLTVEDD-EFWEGVLPVEFGELP--ALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILSYVHGSTELLGLQID- 267 (578)
Q Consensus 199 AlLkv~~~-~~~~~~~~l~l~~~~--~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~~~~~~~~~~~i~~d- 267 (578)
|||+++.+ .+...+.|+.|.... ..+..+++.||..... ...+..-+++...+...... ....+++..
T Consensus 89 ALl~L~~~v~~~~~v~picL~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-~~~~~~Ca~~ 167 (222)
T 1eq9_A 89 ALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWR-VIDSHICTLT 167 (222)
T ss_dssp EEEEESSCCCCBTTBCCCEECSCCTTCTTSEEEEEECCCSSTTCCCCSBCEEEEEEEECHHHHHHHSSS-CCTTEEEECC
T ss_pred EEEEECCccccCCceEccCCCCCCcCCCCCEEEEEcccccCCCCcccchheEeEEEEeCHHHhCcccCC-CCccEEeecC
Confidence 99999986 344568888887643 3578899999864321 11222333333222201011 111244442
Q ss_pred ---cCCCCCCccceEEccCCeEEEEEeccccccccCCceeeecchhHHHHHHHH
Q 008087 268 ---AAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDY 318 (578)
Q Consensus 268 ---a~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l 318 (578)
...|.|+|||||+. +|.++||++....-.. ...+....+...+.++++.
T Consensus 168 ~~~~~~C~GDSGgPL~~-~~~l~GI~S~g~~C~~-~~p~vyt~V~~~~~WI~~~ 219 (222)
T 1eq9_A 168 KRGEGACHGDSGGPLVA-NGAQIGIVSFGSPCAL-GEPDVYTRVSSFVSWINAN 219 (222)
T ss_dssp CTTCBCCTTCTTCEEEE-TTEEEEEEEECSTTTS-SSCEEEEEGGGGHHHHHHT
T ss_pred CCCCeeeeCCccceEEE-CCEEEEEEEECCCcCC-CCCCEEEEHHHHHHHHHHH
Confidence 35789999999997 5899999987542211 2345566777777776553
No 75
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Probab=99.38 E-value=7.6e-12 Score=122.71 Aligned_cols=181 Identities=17% Similarity=0.134 Sum_probs=109.3
Q ss_pred CCCccccCCC--cceEEEEEEEcCCEEEecccccCCCceEEEEEcCC--------CcEEEEEEEEEcC-------CCCEE
Q 008087 137 FSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGS--------DTKYLATVLAIGT-------ECDIA 199 (578)
Q Consensus 137 ~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~--------g~~~~a~vv~~d~-------~~DlA 199 (578)
..+||+.... ....|+|.+|++.||||+|||+.+ ..+.|.+... .+.+..+-+..++ .+|||
T Consensus 10 ~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~-~~~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~y~~~~~~~DIA 88 (234)
T 1orf_A 10 HSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLN-KRSQVILGAHSITREEPTKQIMLVKKEFPYPCYDPATREGDLK 88 (234)
T ss_dssp TSSTTEEEEECSSSCEEEEEEEETTEEEECTTCCCC-TTCEEEESCSBSSSCCTTCEEECEEEEEECTTCCTTTCTTCCE
T ss_pred CCCCeEEEEccCCceEEEEEEeeCCEEEEchhcCCC-CCceEEEeccccCcCCCceEEEEEEEEEcCCCCCCCCCCCCEE
Confidence 4556655432 235799999999999999999975 3456666321 1334444444444 46999
Q ss_pred EEEEeeC-CCCCCeeeEEcCCCC---CCCCcEEEEeecCCCC-------cceEEEeEEeceeeee---ecCCc-eeeeEE
Q 008087 200 MLTVEDD-EFWEGVLPVEFGELP---ALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILS---YVHGS-TELLGL 264 (578)
Q Consensus 200 lLkv~~~-~~~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~---~~~~~-~~~~~i 264 (578)
||+++.+ .+...+.|+.|.... ..|+.+++.||..... ...+..-+++...+.. +.... ....++
T Consensus 89 Ll~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ 168 (234)
T 1orf_A 89 LLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMV 168 (234)
T ss_dssp EEEESSCCCCSSSSCCCCCCSSCCCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEEECHHHHTSTTTTTTTTCCCTTEE
T ss_pred EEEECCcCccCCCeeeeecCCCcCCCCCCCEEEEEECCcCCCCCCccccceEeEEEeeCHHHcCCccccccCCccCCCEE
Confidence 9999976 344567888887533 3578899999864311 1123333444333321 10000 000245
Q ss_pred EEe-----cCCCCCCccceEEccCCeEEEEEeccc--cccccCCceeeecch-hHHHHHHHHH
Q 008087 265 QID-----AAINSGNSGGPAFNDKGKCVGIAFQSL--KHEDVENIGYVIPTP-VIMHFIQDYE 319 (578)
Q Consensus 265 ~~d-----a~i~~G~SGGPlvn~~G~vVGI~~~~~--~~~~~~~~~~aiPi~-~i~~~l~~l~ 319 (578)
+.. ...|.|+|||||+. +|.++||++... .-......+...-+. ..+.++++..
T Consensus 169 Ca~~~~~~~~~C~GDSGgPL~~-~~~l~GI~S~g~~~~C~~~~~p~vyt~v~~~~~~WI~~~~ 230 (234)
T 1orf_A 169 CAGSLRGGRDSCNGDSGSPLLC-EGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTI 230 (234)
T ss_dssp EEECSSCCCBCCTTCTTCEEEE-TTEEEEEEEECCTTCTTCTTSCEEEEECCHHHHHHHHHHH
T ss_pred EecCCCCCCcCCCCCCCCeEEE-CCEEEEEEEEcCCCCCCCCCCCCEEEEchHHHHHHHHHHH
Confidence 543 35789999999998 689999998754 111112345566666 6666666543
No 76
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...
Probab=99.38 E-value=8.6e-12 Score=122.83 Aligned_cols=171 Identities=15% Similarity=0.102 Sum_probs=106.5
Q ss_pred eEEEEEEEcCCEEEecccccCCCceEEEEEcCC--------CcEEEEEEEEEcC---------CCCEEEEEEeeC-CCCC
Q 008087 149 SSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGS--------DTKYLATVLAIGT---------ECDIAMLTVEDD-EFWE 210 (578)
Q Consensus 149 ~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~--------g~~~~a~vv~~d~---------~~DlAlLkv~~~-~~~~ 210 (578)
..|+|.+|++.||||+|||+.....+.|.+... .+.+..+-+..++ .+|||||+++.+ .+..
T Consensus 28 ~~CgGsLI~~~~VLTAAHC~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~v~~~~ 107 (240)
T 1gvk_B 28 HTCGGTLIRQNWVMTAAHCVDRELTFRVVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNS 107 (240)
T ss_dssp EEEEEEEEETTEEEECGGGGCSCCCEEEEESCSBTTSCCSCCEEEEEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCBT
T ss_pred ceEEEEEeeCCEEEECHHHCCCCcceEEEECCeecccCCCcceEEEEEEEEECCCCCCCCCCCCCcEEEEEECCccccCC
Confidence 579999999999999999998877788887321 2234444444544 569999999976 3444
Q ss_pred CeeeEEcCCCC---CCCCcEEEEeecCCCC-------cceEEEeEEeceeeeee-cCC-ceeeeEEEEe----cCCCCCC
Q 008087 211 GVLPVEFGELP---ALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILSY-VHG-STELLGLQID----AAINSGN 274 (578)
Q Consensus 211 ~~~~l~l~~~~---~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~~-~~~-~~~~~~i~~d----a~i~~G~ 274 (578)
.+.|+.|.... ..++.+++.||..... ...+..-+++...+... ..+ .....+|+.. ...|.|+
T Consensus 108 ~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~C~GD 187 (240)
T 1gvk_B 108 YVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDGVRSGCQGD 187 (240)
T ss_dssp TBCCCCCCCTTCCCCTTCCEEEEESCBSSTTCCBCSBCEEEECCEECHHHHTSTTTTGGGCCTTEEEECCSSSCBCCTTC
T ss_pred CccceecCCCCCCCCCCCEEEEEecCcCCCCCCcchhccEEEEEEEcHHHhccccccCccCCcceEeecCCCCCcccCCC
Confidence 67788776532 3578899999864321 11222233333222211 001 1112345553 3568999
Q ss_pred ccceEEcc-CC--eEEEEEeccc--cccccCCceeeecchhHHHHHHHHH
Q 008087 275 SGGPAFND-KG--KCVGIAFQSL--KHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 275 SGGPlvn~-~G--~vVGI~~~~~--~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
|||||+.. +| .++||++... .-......+...-+...+.++++..
T Consensus 188 SGgPL~~~~~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~i 237 (240)
T 1gvk_B 188 SGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237 (240)
T ss_dssp TTCEEEEEETTEEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHH
T ss_pred CcCceEEEECCcEEEEEEEEEeCCCCCCCCCCCcEEEeHHHHHHHHHHHH
Confidence 99999964 57 8999998743 1111123455667777777776644
No 77
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}
Probab=99.38 E-value=4.5e-12 Score=123.92 Aligned_cols=182 Identities=18% Similarity=0.156 Sum_probs=113.5
Q ss_pred CCCccccCCC--cceEEEEEEEcCCEEEecccccCC--CceEEEEEcC-----CCcEEEEEEEEEc------CCCCEEEE
Q 008087 137 FSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEH--YTQVKLKKRG-----SDTKYLATVLAIG------TECDIAML 201 (578)
Q Consensus 137 ~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~--~~~i~V~~~~-----~g~~~~a~vv~~d------~~~DlAlL 201 (578)
..+||+.... ....|+|.+|++.||||+|||+.+ ...+.|.+.. .+..+..+-+..+ ..+|||||
T Consensus 10 ~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~v~~i~~h~y~~~~~~~DiAll 89 (235)
T 3h7t_A 10 TKEPWAVGVLVDEKPFCGGSILTANFVITAAQCVDGTKPSDISIHYGSSYRTTKGTSVMAKKIYIVRYHPLTMQNNYAVI 89 (235)
T ss_dssp TTSTTEEEEEETTSCCEEEEESSSSEEEECHHHHTTCCGGGEEEEESCSBSSSSSEEEEEEEEEECSCBTTTTBTCCEEE
T ss_pred CCCCcEEEEecCCCceEeEEEeeCCEEEECHHHCCCCCCCeeEEEcCccccccCCceeeeeeEEeeecCCCCCCCCeEEE
Confidence 3456655432 234699999999999999999964 3467777732 1233433333332 34799999
Q ss_pred EEeeCC-CCC-CeeeEEcCCC---CCCCCcEEEEeecCCCC--------cceEEEeEEeceeeeeecCCc-----eeeeE
Q 008087 202 TVEDDE-FWE-GVLPVEFGEL---PALQDAVTVVGYPIGGD--------TISVTSGVVSRIEILSYVHGS-----TELLG 263 (578)
Q Consensus 202 kv~~~~-~~~-~~~~l~l~~~---~~~g~~V~~iG~p~g~~--------~~sv~~G~Is~~~~~~~~~~~-----~~~~~ 263 (578)
+++.+. +.. .+.++.|... ...++.+++.||..... ...+...+++...+....... ....+
T Consensus 90 ~L~~~v~~~~~~v~pi~Lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ 169 (235)
T 3h7t_A 90 ETEMPIKLDDKTTKKIELPSLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGV 169 (235)
T ss_dssp EESSCCCCCSSSCCCCBCCCTTCCCCTTCEEEEEECCCSSTTCCCCCSBCEEEEEEEECHHHHHHHHHTTTCGGGCSTTE
T ss_pred EeccccccCCccccceecCccccCCCCCCeEEEEecCCCCCCCCchhHHHhhCCCceeCHHHHHHHhhhcccCccccCCe
Confidence 999763 334 5778888753 35689999999864311 122333444433322111110 11124
Q ss_pred EEE-----ecCCCCCCccceEEccCCeEEEEEeccccccccCCceeeecchhHHHHHHHHHH
Q 008087 264 LQI-----DAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 264 i~~-----da~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
|+. ....|.|+|||||+. +|+++||++....-.. ...+....+...+.++++..+
T Consensus 170 ~Ca~~~~~~~~~C~GDsGgPl~~-~~~l~Gi~S~g~~C~~-~~p~vyt~v~~~~~WI~~~i~ 229 (235)
T 3h7t_A 170 FCAGGEYDETYIGYGDAGDPAVQ-NGTLVGVASYISSMPS-EFPSVFLRVGYYVLDIKDIIS 229 (235)
T ss_dssp EEECBTTTTBBCCTTCTTCEEEE-TTEEEEEECCCTTCCT-TSCEEEEEGGGGHHHHHHHHT
T ss_pred EecCCCCCCCccccCCCCCceee-CCeEEEEEEecCCCCC-CCCceEEEHHHHHHHHHHHHh
Confidence 554 345788999999998 7899999987543211 345667788888888877654
No 78
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2
Probab=99.38 E-value=8.9e-12 Score=122.48 Aligned_cols=168 Identities=15% Similarity=0.147 Sum_probs=103.9
Q ss_pred EEEEEEEcCCEEEecccccCCC-----ceEEEEEcC------CC--cEEEEEEEEEcC-------CCCEEEEEEeeC-CC
Q 008087 150 SSSGFAIGGRRVLTNAHSVEHY-----TQVKLKKRG------SD--TKYLATVLAIGT-------ECDIAMLTVEDD-EF 208 (578)
Q Consensus 150 ~GsGfvI~~g~ILT~aHvV~~~-----~~i~V~~~~------~g--~~~~a~vv~~d~-------~~DlAlLkv~~~-~~ 208 (578)
.|+|.+|++.||||+|||+.+. ..+.|.+.. ++ +.+..+-+..++ .+|||||+++.+ .+
T Consensus 29 ~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~ 108 (237)
T 2f91_A 29 FCGASIYNENYAITAGHCVYGDDYENPSGLQIVAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTF 108 (237)
T ss_dssp EEEEEEEETTEEEECGGGTTTSCTTSCCSEEEEESCSBTTSCCSCCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCC
T ss_pred eEEEEEeeCCEEEEcHHhCCCCccCCcccEEEEECCeeccCCCCccEEEEEEEEEECCCCCCCCCCCcEEEEEECCCccc
Confidence 4999999999999999999753 457777732 11 334444445554 469999999976 34
Q ss_pred CCCeeeEEcCCCC-CCCCcEEEEeecCCCC-------cceEEEeEEeceeeeeecC-CceeeeEEEEe-----cCCCCCC
Q 008087 209 WEGVLPVEFGELP-ALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILSYVH-GSTELLGLQID-----AAINSGN 274 (578)
Q Consensus 209 ~~~~~~l~l~~~~-~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~~~~-~~~~~~~i~~d-----a~i~~G~ 274 (578)
...+.|+.|.... ..++.++++||..... ...+..-+++...+..... ......+++.. ...|.|+
T Consensus 109 ~~~v~picLp~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~GD 188 (237)
T 2f91_A 109 NDNVAPIALPEQGHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYGADEILDSMICAGVPEGGKDSCQGD 188 (237)
T ss_dssp BTTBCCCBCCCTTCCCCSEEEEEESCCSSTTCCCCSBCEEEEEEEECHHHHHHHHCTTTSCTTEEEECCTTCCCBCCTTC
T ss_pred CCceeeccCCCCCCCCCCcEEEEECCcCCCCCCccceeeEEEEeEcCHHHhhhhhCCCCcCCCeEEEecCCCCCCCCCCc
Confidence 4568888887633 4678899999864311 1123333444332221110 11112345542 3578999
Q ss_pred ccceEEccCC---eEEEEEeccccccccCCceeeecchhHHHHHHH
Q 008087 275 SGGPAFNDKG---KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQD 317 (578)
Q Consensus 275 SGGPlvn~~G---~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~ 317 (578)
|||||+..++ .++||++....-......+...-+...+.++++
T Consensus 189 SGgPL~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~ 234 (237)
T 2f91_A 189 SGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKA 234 (237)
T ss_dssp TTCEEEECTTSSCEEEEEEEEESSSSCTTCCEEEEEGGGSHHHHHH
T ss_pred CCCCeEEecCCCEEEEEEEEecCCCCCCCCCcEEEEHHHhHHHHHH
Confidence 9999997532 899999875432111233555666666666654
No 79
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A
Probab=99.38 E-value=1.4e-11 Score=119.97 Aligned_cols=167 Identities=19% Similarity=0.161 Sum_probs=104.7
Q ss_pred ceEEEEEEEcCCEEEecccccCCCceEEEEEcCC--------CcEEEEEEEEEcCC-------CCEEEEEEeeC-CCCCC
Q 008087 148 SSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGS--------DTKYLATVLAIGTE-------CDIAMLTVEDD-EFWEG 211 (578)
Q Consensus 148 ~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~--------g~~~~a~vv~~d~~-------~DlAlLkv~~~-~~~~~ 211 (578)
...|+|.+|++.||||+|||+. ..+.|.+... .+.+...-+..++. +|||||+++.+ .+...
T Consensus 27 ~~~CgGtLI~~~~VLTAAhC~~--~~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DIALl~L~~~~~~~~~ 104 (226)
T 4ag1_A 27 SKFCGGFLIRRNFVLTAAHCAG--RSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLA 104 (226)
T ss_dssp CEEEEEEEEETTEEEECGGGCC--SEEEEEESCSBTTSCCTTCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCCSS
T ss_pred ccEEEEEEEeCCEEEECcccCC--CCeEEEeCCcccCCCCCcceEEEEEEEEeCCCCCCCCCcCcEEEEEECCCCccCCc
Confidence 4579999999999999999995 4667776321 12344444555554 69999999976 33445
Q ss_pred eeeEEcCCCC---CCCCcEEEEeecCCCC-------cceEEEeEEeceeeeeecCCceeeeEEEEe-----cCCCCCCcc
Q 008087 212 VLPVEFGELP---ALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILSYVHGSTELLGLQID-----AAINSGNSG 276 (578)
Q Consensus 212 ~~~l~l~~~~---~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~~~~~~~~~~~i~~d-----a~i~~G~SG 276 (578)
+.++.|.... ..|+.+.+.||..... ...+...+++...+..+... .....+++. ...|.|+||
T Consensus 105 v~pi~l~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-~~~~~~Ca~~~~~~~~~C~GDsG 183 (226)
T 4ag1_A 105 VGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDF-DHNLQLCVGNPRKTKSAFKGDSG 183 (226)
T ss_dssp SCCCCCC-----CCTTCEEEEEESSBSSTTSCBCSBCEEEEEEEECGGGGTTSTTC-CTTTEEEESCTTSCCBCCTTCTT
T ss_pred eeccccCCcccCCCCCCEEEEEECCCCCCCCCCCCEeEEEEEEEcChHHcccccCc-CccceEeeccCCCCCcCccCCCC
Confidence 6677776432 4588999999864311 11233344443333211111 111234542 357889999
Q ss_pred ceEEccCCeEEEEEeccccccccCCceeeecchhHHHHHHHHHH
Q 008087 277 GPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 277 GPlvn~~G~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
|||+. ++.++||++.... .....+.+..+...+.++++..+
T Consensus 184 gPl~~-~~~l~Gi~S~g~~--c~~~p~vyt~v~~~~~WI~~~i~ 224 (226)
T 4ag1_A 184 GPLLC-AGVAQGIVSYGRS--DAKPPAVFTRISHYRPWINQILQ 224 (226)
T ss_dssp CEEEE-TTEEEEEEEECBT--TCCSCEEEEEHHHHHHHHHHHHH
T ss_pred CceEE-cCEEEEEEEECCC--CCCCCCEEEEhHHHHHHHHHHHh
Confidence 99998 6899999987543 22235666777777777776543
No 80
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A*
Probab=99.38 E-value=6.2e-12 Score=123.60 Aligned_cols=183 Identities=16% Similarity=0.163 Sum_probs=111.2
Q ss_pred CCCCccccCCC---cceEEEEEEEcCCEEEecccccCCC--------ceEEEEEcC---------CCcEEEEEEEEEcC-
Q 008087 136 NFSLPWQRKRQ---YSSSSSGFAIGGRRVLTNAHSVEHY--------TQVKLKKRG---------SDTKYLATVLAIGT- 194 (578)
Q Consensus 136 ~~~~p~~~~~~---~~~~GsGfvI~~g~ILT~aHvV~~~--------~~i~V~~~~---------~g~~~~a~vv~~d~- 194 (578)
...+||+.... ....|+|.+|++.||||+|||+.+. ..+.|.+.. ....+..+-+..++
T Consensus 9 ~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAhC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~v~~i~~hp~ 88 (241)
T 3ncl_A 9 EGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPF 88 (241)
T ss_dssp TTSSTTEEEEEETTTEEEEEEEECSSSEEEECGGGGCCBTTBCTTCGGGEEEEESCSBTTCTTSTTCEEEEEEEEEECTT
T ss_pred CCCCCcEEEEEcCCCceEEEEEEeeCCEEEEcHHhcccCCCccccCCceEEEEEeccccccCCCCCceEEEEEEEEECCC
Confidence 34566665432 2357999999999999999999642 456776631 12344555555555
Q ss_pred ------CCCEEEEEEeeC-CCCCCeeeEEcCCCC---CCCCcEEEEeecCCCC-------cceEEEeEEeceeeeeecCC
Q 008087 195 ------ECDIAMLTVEDD-EFWEGVLPVEFGELP---ALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILSYVHG 257 (578)
Q Consensus 195 ------~~DlAlLkv~~~-~~~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~~~~~ 257 (578)
.+|||||+++.+ .+...+.|+.|.... ..++.+++.||..... ...+...+++...+......
T Consensus 89 y~~~~~~~DIALl~L~~~~~~~~~v~piclp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~ 168 (241)
T 3ncl_A 89 FNDFTFDYDIALLELEKPAEYSSMVRPISLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQ 168 (241)
T ss_dssp CCTTTCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEECCHHHHHHHSTT
T ss_pred CCCCCCCCcEEEEEECCCCcccCccCceEcCCcccCCCCCCEEEEEEecccCCCCCcCceeeEEeEEEECHHHhhhhccc
Confidence 469999999876 344567888886532 3578999999864311 11222333332222221111
Q ss_pred ceeeeEEEEe-----cCCCCCCccceEEc--cCCe--EEEEEeccccccccCCceeeecchhHHHHHHHH
Q 008087 258 STELLGLQID-----AAINSGNSGGPAFN--DKGK--CVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDY 318 (578)
Q Consensus 258 ~~~~~~i~~d-----a~i~~G~SGGPlvn--~~G~--vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l 318 (578)
.....+++.. ...|.|+|||||+. .+|+ ++||++....-......+.+..+...+.++++.
T Consensus 169 ~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~g~~~l~Gi~S~g~~c~~~~~p~vyt~v~~y~~WI~~~ 238 (241)
T 3ncl_A 169 QITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKEN 238 (241)
T ss_dssp TCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSCTTCCEEEEESGGGHHHHHHH
T ss_pred CCCCCeEEeCCCCCCCccCCCcCCCCEEEEcCCCcEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHHH
Confidence 1122345542 35789999999984 3554 899998754322223345667777777777654
No 81
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=99.37 E-value=3.4e-13 Score=116.99 Aligned_cols=97 Identities=20% Similarity=0.352 Sum_probs=82.2
Q ss_pred CceeccccCCcccccccChhhhhhhcccc-----CCCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccC
Q 008087 322 GAYTGFPLLGVEWQKMENPDLRVAMSMKA-----DQKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHG 395 (578)
Q Consensus 322 g~v~~~~~lGi~~~~~~~~~~~~~lgl~~-----~~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~ 395 (578)
|++. |+|||+.++.+ ++++++.|+++. ...|++|..|.++|||++ ||++||+|++|||++|.++.+
T Consensus 1 G~v~-~~~lGi~~~~l-~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~------ 72 (112)
T 2p3w_A 1 GSHM-KRFIGIRMRTI-TPSLVDELKASNPDFPEVSSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSE------ 72 (112)
T ss_dssp CCCC-EEECCEEEEEC-CHHHHHHHHHHCTTC--CCSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHH------
T ss_pred CCcc-cceeeEEEecC-CHHHHHHhcccCcCcccCCCCeEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHH------
Confidence 4566 89999999999 899999998753 357999999999999999 999999999999999999876
Q ss_pred cchhHHHHHhccCCCCEEEEEEEECCEEEEEEEEeccc
Q 008087 396 ERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNITLATH 433 (578)
Q Consensus 396 ~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v~l~~~ 433 (578)
|...+. .|+.+.|+|.|+|+.+++.+++...
T Consensus 73 ----~~~~l~---~g~~v~l~v~R~g~~~~~~v~~~~~ 103 (112)
T 2p3w_A 73 ----LQEAVL---TESPLLLEVRRGNDDLLFSIAPEVV 103 (112)
T ss_dssp ----HHHHHH---HCSSEEEEEEETTEEEEEEECCEEE
T ss_pred ----HHHHHh---CCCeEEEEEEECCEEEEEEEEEeee
Confidence 344442 4788999999999998888877644
No 82
>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Probab=99.37 E-value=8.8e-12 Score=122.30 Aligned_cols=182 Identities=13% Similarity=0.096 Sum_probs=111.1
Q ss_pred CCccccCCC---cceEEEEEEEcCCEEEecccccCC----CceEEEEEcCC----------CcEEEEEEEEEcC-CCCEE
Q 008087 138 SLPWQRKRQ---YSSSSSGFAIGGRRVLTNAHSVEH----YTQVKLKKRGS----------DTKYLATVLAIGT-ECDIA 199 (578)
Q Consensus 138 ~~p~~~~~~---~~~~GsGfvI~~g~ILT~aHvV~~----~~~i~V~~~~~----------g~~~~a~vv~~d~-~~DlA 199 (578)
.+||+.... ....|+|.+|++.||||+|||+.+ ...+.|.+... .+.+...-+..++ .+|||
T Consensus 8 ~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~~hp~~~DiA 87 (234)
T 2asu_B 8 NSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSGSQLV 87 (234)
T ss_dssp CCTTEEEEECTTSCEEEEEEEEETTEEEEEGGGSSCTTCCCTTCEEEESCSBSSCCTTCTTCEEEEEEEEEECSTTCCEE
T ss_pred CCcceEEeeccCCCEEEEEEEEeCCEEEECHHHcCCCCCCcccEEEEEeeeeccCCCCCCceEEEEEEEEecCCCCCCeE
Confidence 356665432 245799999999999999999964 34567776321 1233333334444 58999
Q ss_pred EEEEeeC-CCCCCeeeEEcCCCC---CCCCcEEEEeecCCCC------cceEEEeEEeceeeeeecCCceeeeEEEEe--
Q 008087 200 MLTVEDD-EFWEGVLPVEFGELP---ALQDAVTVVGYPIGGD------TISVTSGVVSRIEILSYVHGSTELLGLQID-- 267 (578)
Q Consensus 200 lLkv~~~-~~~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~------~~sv~~G~Is~~~~~~~~~~~~~~~~i~~d-- 267 (578)
||+++.+ .+...+.|+.|.... ..|+.++++||..... ...+..-+++...+...........+++..
T Consensus 88 Ll~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~ 167 (234)
T 2asu_B 88 LLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTGNDTVLNVALLNVISNQECNIKHRGRVRESEMCTEGL 167 (234)
T ss_dssp EEEESSCCCCSSSSCCCBCCCTTCCCCTTCEEEEEESSCCTTSSCTTBCEEEEEEEECHHHHHHHTTTCCCTTEEEECCC
T ss_pred EEEeCCcCcCCCcEeccCCCCccccCCCCCEEEEEeCCccCCCCCCccceEEEeeEEcHHHcccccCCccCcceEeecCC
Confidence 9999986 344567888887532 3578999999864321 112233344433332211111112345542
Q ss_pred ---cCCCCCCccceEEccC-C--eEEEEEeccccccccCCceeeecchhHHHHHHHHH
Q 008087 268 ---AAINSGNSGGPAFNDK-G--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 268 ---a~i~~G~SGGPlvn~~-G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
...|.|+|||||+... | .++||++....-......+....+...+.++++..
T Consensus 168 ~~~~~~C~GDSGgPL~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~ 225 (234)
T 2asu_B 168 LAPVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVM 225 (234)
T ss_dssp SSCCBCCTTCTTCEEEEEETTEEEEEEEECCCSSSSCTTCCEEEEEGGGSHHHHHHHC
T ss_pred CCCCeeccCCCCCceEEEECCeEEEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHHh
Confidence 3578999999999753 3 89999987543222233456677777777776654
No 83
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Probab=99.36 E-value=7.5e-12 Score=122.89 Aligned_cols=169 Identities=14% Similarity=0.128 Sum_probs=105.5
Q ss_pred eEEEEEEEcCCEEEecccccCCCceEEEEEcCC--------CcEEEEEEEEEcC---------CCCEEEEEEeeC-CCCC
Q 008087 149 SSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGS--------DTKYLATVLAIGT---------ECDIAMLTVEDD-EFWE 210 (578)
Q Consensus 149 ~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~--------g~~~~a~vv~~d~---------~~DlAlLkv~~~-~~~~ 210 (578)
..|+|.+|++.||||+|||+.+...+.|.+... .+.+..+-+..++ .+|||||+++.+ .+..
T Consensus 28 ~~CgGtLIs~~~VLTAAHC~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~ 107 (236)
T 1elt_A 28 HTCGGSLIRQGWVMTAAHCVDSARTWRVVLGEHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNS 107 (236)
T ss_dssp EEEEEEEEETTEEEECHHHHSSCCCEEEEESCSBTTSCCSCCEEECEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCSS
T ss_pred eEEEEEEEeCCEEEECHHhhCCcCceEEEEccccCCCCCCCcEEEEEEEEEECCCCCCCCCCCCccEEEEECCCCCccCC
Confidence 579999999999999999998877888888421 1234444444543 569999999976 3445
Q ss_pred CeeeEEcCCCC---CCCCcEEEEeecCCCC-------cceEEEeEEeceeeeeec-CC-ceeeeEEEEe---cCCCCCCc
Q 008087 211 GVLPVEFGELP---ALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILSYV-HG-STELLGLQID---AAINSGNS 275 (578)
Q Consensus 211 ~~~~l~l~~~~---~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~~~-~~-~~~~~~i~~d---a~i~~G~S 275 (578)
.+.|+.|.... ..++.++++||..... ...+..-+++...+.... .+ .....+++.. ...|.|+|
T Consensus 108 ~v~picL~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~C~GDS 187 (236)
T 1elt_A 108 AVQLAALPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKTTMVCAGGGANSGCNGDS 187 (236)
T ss_dssp SCCCCCCCCTTCCCCTTCCEEEEESCCSSTTCCCCSBCEEEECCEECHHHHTSTTTTGGGSCTTEEEECCSSCBCCTTCT
T ss_pred cEEeccCCCccccCCCCCEEEEEeCCCcCCCCCcChhheEeEeeecCHHHhccccccCCcCCcceEEecCCCCccCCCCC
Confidence 67888887532 3578899999864321 112222333332222110 01 1112345543 35789999
Q ss_pred cceEEcc-CC--eEEEEEecccc--ccccCCceeeecchhHHHHHHH
Q 008087 276 GGPAFND-KG--KCVGIAFQSLK--HEDVENIGYVIPTPVIMHFIQD 317 (578)
Q Consensus 276 GGPlvn~-~G--~vVGI~~~~~~--~~~~~~~~~aiPi~~i~~~l~~ 317 (578)
||||+.. +| .++||++.... -......+...-+...+.++++
T Consensus 188 GgPL~~~~~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~ 234 (236)
T 1elt_A 188 GGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNG 234 (236)
T ss_dssp TCEEEEEETTEEEEEEEEEECCSSCTTCTTCCEEEEEGGGGHHHHHH
T ss_pred CCeeEEEECCEEEEEEEEEEeCCCCCCCCCCCeEEEEHHHhHHHHHh
Confidence 9999975 56 89999987431 1111234556666666666654
No 84
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A
Probab=99.36 E-value=1.5e-11 Score=121.24 Aligned_cols=184 Identities=18% Similarity=0.179 Sum_probs=112.0
Q ss_pred CCCccccCCC--cceEEEEEEEcCCEEEecccccCCCc-eEEEEEcC-----CCcEEEEEEEEEc--------CCCCEEE
Q 008087 137 FSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHYT-QVKLKKRG-----SDTKYLATVLAIG--------TECDIAM 200 (578)
Q Consensus 137 ~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~~-~i~V~~~~-----~g~~~~a~vv~~d--------~~~DlAl 200 (578)
..+||+.... ....|+|.+|++.||||+|||+.+.. .+.|.+.. .+..+..+-+..+ ..+||||
T Consensus 10 ~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~v~~G~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~DIAL 89 (240)
T 2zgc_A 10 HSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQRMAQLRLVLGLHTLDSPGLTFHIKAAIQHPRYKPVPALENDLAL 89 (240)
T ss_dssp TSSTTEEEEEETTEEEEEEEEEETTEEEECGGGGCSCGGGEEEEESCSBSSSCCEEEEEEEEEECTTCBCTTSCBSCCEE
T ss_pred CCcCcEEEEEeCCCeEEEEEEEcCCEEEEcHHhcCCCCCCEEEEecccccCCCCeEEEEEEEEECCCCCCCCCCcccEEE
Confidence 3456655432 23579999999999999999998653 57777732 1234444434343 3479999
Q ss_pred EEEeeC-CCCCCeeeEEcCCCC---CCCCcEEEEeecCCCC-------cceEEEeEEeceeeee--ecCCceeeeEEEEe
Q 008087 201 LTVEDD-EFWEGVLPVEFGELP---ALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILS--YVHGSTELLGLQID 267 (578)
Q Consensus 201 Lkv~~~-~~~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~--~~~~~~~~~~i~~d 267 (578)
|+++.+ .+...+.|+.|.... ..|+.+++.||..... ...+..-+++...+.. .........++++.
T Consensus 90 l~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~ 169 (240)
T 2zgc_A 90 LQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLA 169 (240)
T ss_dssp EEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEECCBSSTTCCBCSBCEEEEEEECCHHHHTSTTTTTTCCCTTEEEEE
T ss_pred EEeCCcccCCCceeeeEcCCCCCCCCCCCEEEEEECCcccCCCCcCceeeeeeeeecCHHHhCCccccCCCCCCceEeec
Confidence 999976 344567888887533 3588999999864321 1122223333222221 11111111345542
Q ss_pred -----cCCCCCCccceEEccC-CeEEEEEeccc-cccccCCceeeecchhHHHHHHHHHH
Q 008087 268 -----AAINSGNSGGPAFNDK-GKCVGIAFQSL-KHEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 268 -----a~i~~G~SGGPlvn~~-G~vVGI~~~~~-~~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
...|.|+|||||+..+ ..++||++... .-......+....+...+.++++...
T Consensus 170 ~~~~~~~~C~GDSGgPL~~~~~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~ 229 (240)
T 2zgc_A 170 ADSKDQAPCKGDSGGPLVCGKGRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVTG 229 (240)
T ss_dssp CSSTTCBCCTTCTTCEEEETTTTEEEEEECCCCSSTTCTTSCCEEEESGGGHHHHHHHHC
T ss_pred cCCCCCccCCCCccCeeEECCCCEEEEEEEECCCCCCCCCCCcEEEEHHHhHHHHHHHHh
Confidence 3578999999999742 38999998742 11112234566777788888877654
No 85
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2
Probab=99.36 E-value=1.1e-11 Score=121.12 Aligned_cols=166 Identities=18% Similarity=0.182 Sum_probs=101.9
Q ss_pred ceEEEEEEEcCCEEEecccccCCCceEEEEEcCC--------CcEEEEEEEEEcC-------CCCEEEEEEeeC-CCCCC
Q 008087 148 SSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGS--------DTKYLATVLAIGT-------ECDIAMLTVEDD-EFWEG 211 (578)
Q Consensus 148 ~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~--------g~~~~a~vv~~d~-------~~DlAlLkv~~~-~~~~~ 211 (578)
...|+|.+|++.||||+|||+.+ .+.|++... ...+..+-+..++ .+|||||+++.+ .+...
T Consensus 26 ~~~CgGsLI~~~~VLTAAHC~~~--~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~ 103 (227)
T 1euf_A 26 SHICGGFLVREDFVLTAAHCLGS--SINVTLGAHNIMERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDK 103 (227)
T ss_dssp EEEEEEEEEETTEEEECGGGCCE--EEEEEESCSBTTSCCTTCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCCSS
T ss_pred ceEEEEEEeeCCEEEECHHHCCC--CcEEEEcccccCCCCCccEEEEEEEEEeCCCCCCCCCcCceEEEEECCcCcCCCc
Confidence 35799999999999999999975 566666321 2334444444544 469999999976 34456
Q ss_pred eeeEEcCCCC---CCCCcEEEEeecCCCC-------cceEEEeEEeceeeeeecCCceeeeEEEEe-----cCCCCCCcc
Q 008087 212 VLPVEFGELP---ALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILSYVHGSTELLGLQID-----AAINSGNSG 276 (578)
Q Consensus 212 ~~~l~l~~~~---~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~~~~~~~~~~~i~~d-----a~i~~G~SG 276 (578)
+.|+.|.... ..|+.+++.||..... ...+..-+++...+...........+|+.. ...+.|+||
T Consensus 104 v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~~~GDsG 183 (227)
T 1euf_A 104 VSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNYIPFTQICAGDPSKRKNSFSGDSG 183 (227)
T ss_dssp CCCCCCCCTTCCCCTTCEEEEEESCBSSTTCCBCSBCEEEEEEBCCTHHHHTTCTTCCTTTEEEESCTTSCCBCCTTCTT
T ss_pred eeccCCCCccccCCCCCEEEEEEEccCCCCCCCchhheEeEeccccHHHhhHhhcCcCCCcEEEccCCCCCCcccccCCC
Confidence 7888887532 3578999999864321 112222333322222111111111245542 234489999
Q ss_pred ceEEccCCeEEEEEeccccccccCCceeeecchhHHHHHHHH
Q 008087 277 GPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDY 318 (578)
Q Consensus 277 GPlvn~~G~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l 318 (578)
|||+. +|.++||++..-. .....+...-+...+.++++.
T Consensus 184 gPL~~-~~~l~Gi~S~gc~--~~~~p~vyt~V~~y~~WI~~~ 222 (227)
T 1euf_A 184 GPLVC-NGVAQGIVSYGRN--DGTTPDVYTRISSFLSWIHST 222 (227)
T ss_dssp CEEEE-TTEEEEEEEECCT--TCCSCEEEEEGGGTHHHHHHH
T ss_pred CceEE-CCEEEEEEEEeCC--CCCCCeEEEEHHHhHHHHHHH
Confidence 99997 6899999987421 222345566677777776654
No 86
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Probab=99.36 E-value=1.3e-11 Score=121.23 Aligned_cols=183 Identities=17% Similarity=0.141 Sum_probs=111.2
Q ss_pred CCCccccCCCc----ceEEEEEEEcCCEEEecccccCCC--ceEEEEEcCC--------CcEEEEEEEEEcC-------C
Q 008087 137 FSLPWQRKRQY----SSSSSGFAIGGRRVLTNAHSVEHY--TQVKLKKRGS--------DTKYLATVLAIGT-------E 195 (578)
Q Consensus 137 ~~~p~~~~~~~----~~~GsGfvI~~g~ILT~aHvV~~~--~~i~V~~~~~--------g~~~~a~vv~~d~-------~ 195 (578)
..+||+..... ...|+|.+|++.||||+|||+.+. ..+.|.+... .+.+..+-+..++ .
T Consensus 10 ~~~Pw~v~l~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~ 89 (238)
T 1ym0_A 10 YEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGEAPALVSLVVGEHDSSAASTVRQTHDVDSIFVNENYDPATLE 89 (238)
T ss_dssp TSSTTEEEEEEGGGTEEEEEEEEEETTEEEECHHHHTTCCGGGEEEEESCSBTTSCCSSCEEEEEEEEEECTTCCTTTCT
T ss_pred CccCCEEEEEeCCCCceEEEEEEeeCCEEEECHHhCCCCCCceEEEEEcccccCCCCCCceEEEEEEEEECCCCCCCCCc
Confidence 34566554321 357999999999999999999764 5677877321 2334444445554 4
Q ss_pred CCEEEEEEeeC-CCCCCeeeEEcCCCC--CCCCcEEEEeecCCCC--------cceEEEeEEeceeeeeecCC-ceeeeE
Q 008087 196 CDIAMLTVEDD-EFWEGVLPVEFGELP--ALQDAVTVVGYPIGGD--------TISVTSGVVSRIEILSYVHG-STELLG 263 (578)
Q Consensus 196 ~DlAlLkv~~~-~~~~~~~~l~l~~~~--~~g~~V~~iG~p~g~~--------~~sv~~G~Is~~~~~~~~~~-~~~~~~ 263 (578)
+|||||+++.+ .+...+.|+.|.... ..++.++++||..... ...+..-+++...+...... .....+
T Consensus 90 ~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~ 169 (238)
T 1ym0_A 90 NDVSVIKTAVAITFDINVGPICAPDPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSDTIYDDM 169 (238)
T ss_dssp TCCEEEEESSCCCCSSSCCCCBCCCTTCCCTTCEEEEEESCCSSTTCCSCCSBCEEEEEEECCHHHHHHHCTTSCCCTTE
T ss_pred ccEEEEEeCCCccccCcccccCCCCCcCCCCCCceEEEeecCCCCCCCcCCccceEEEEEeeCHHHHhHhhcccccCCCe
Confidence 69999999976 344567888887533 2578899999864321 11222233332222211111 111124
Q ss_pred EEEe-------cCCCCCCccceEEccC--C--eEEEEEeccccccccCCceeeecchhHHHHHHHHHH
Q 008087 264 LQID-------AAINSGNSGGPAFNDK--G--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 264 i~~d-------a~i~~G~SGGPlvn~~--G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
|+.. ...|.|+|||||+..+ | .++||++....-. ....+....+...+.++++..+
T Consensus 170 ~Ca~~~~~~~~~~~C~GDsGgPL~~~~~~~~~~l~Gi~S~g~~C~-~~~p~vyt~v~~~~~WI~~~i~ 236 (238)
T 1ym0_A 170 ICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCA-SGYPGVYSRVGFHAGWITDTIT 236 (238)
T ss_dssp EEEECSSCSSSCBCCTTTTTCEEEEECTTCCEEEEEEEEECSSSS-SSSCEEEEEHHHHHHHHHHHHH
T ss_pred EEecCCCCCCcCccCCCccCCeeEEECCCCCEEEEEEEeECCCCC-CCCCcEEEEHHHhHHHHHHHhc
Confidence 5542 4678999999998753 4 7999998754321 2234556677777777766543
No 87
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2
Probab=99.36 E-value=3.1e-12 Score=126.00 Aligned_cols=184 Identities=17% Similarity=0.185 Sum_probs=112.7
Q ss_pred CCCCCCccccCCCcceEEEEEEEcCCEEEecccccCC-------CceEEEEEcCCC-------cEEEEEEEEEcC-----
Q 008087 134 EPNFSLPWQRKRQYSSSSSGFAIGGRRVLTNAHSVEH-------YTQVKLKKRGSD-------TKYLATVLAIGT----- 194 (578)
Q Consensus 134 ~~~~~~p~~~~~~~~~~GsGfvI~~g~ILT~aHvV~~-------~~~i~V~~~~~g-------~~~~a~vv~~d~----- 194 (578)
.....+||+........|+|.+|++.||||+|||+.. ...+.|.+.... ..+..+-+..++
T Consensus 7 a~~~~~Pw~v~l~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~Hp~y~~~ 86 (242)
T 2qy0_B 7 AKMGNFPWQVFTNIHGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQD 86 (242)
T ss_dssp CCTTSSTTEEEEESSSEEEEEEETTTEEEECHHHHSCSSCCC----CCEEEESCSBHHHHHHHCCCCEEEEEECTTCCTT
T ss_pred CCCCCCCcEEEEccCCCEEEEEEeCCEEEEcHHhccccccccCCCceEEEEEeeccccccccccceeEEEEEECCCCccC
Confidence 3445678887665556899999999999999999973 234667763211 123333344443
Q ss_pred -----CCCEEEEEEeeC-CCCCCeeeEEcCCCC---CCCCcEEEEeecCCCC-----cceEEEeEEeceeeeeecC----
Q 008087 195 -----ECDIAMLTVEDD-EFWEGVLPVEFGELP---ALQDAVTVVGYPIGGD-----TISVTSGVVSRIEILSYVH---- 256 (578)
Q Consensus 195 -----~~DlAlLkv~~~-~~~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~-----~~sv~~G~Is~~~~~~~~~---- 256 (578)
.+|||||+++.+ .+...+.|+.|.... ..|..+++.||..... ...+..-+++...+.....
T Consensus 87 ~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~ 166 (242)
T 2qy0_B 87 ESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRGKNR 166 (242)
T ss_dssp CSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCCCSSSCCSBCEEEEEEBCCHHHHHHHHHHTTC
T ss_pred cCCCCCCcEEEEEECCCCcCCCCcceeecCCCccccCCCCeEEEEeeccCCCcCCccceEEEEEEeCHHHHHHHhccccc
Confidence 349999999976 344567888887533 4578899999864322 1122223333222211100
Q ss_pred -CceeeeEEEEe-----cCCCCCCccceEEccCC-----eEEEEEeccccccccCCceeeecchhHHHHHHHHH
Q 008087 257 -GSTELLGLQID-----AAINSGNSGGPAFNDKG-----KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 257 -~~~~~~~i~~d-----a~i~~G~SGGPlvn~~G-----~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
......+|++. ...|.|+|||||+..++ .++||++....- ..+.+...-+...+.++++..
T Consensus 167 ~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~~~~~~~l~Gi~S~g~~C--~~~~~vyt~V~~y~~WI~~~~ 238 (242)
T 2qy0_B 167 MDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGC--SRGYGFYTKVLNYVDWIKKEM 238 (242)
T ss_dssp CCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSS--SSSCEEEEEGGGGHHHHHHHT
T ss_pred cccCCCCEEeccCCCCCCccccCCCCCcEEEEECCCCeEEEEEEEEECCCc--CCCCcEEEEHHHHHHHHHHHh
Confidence 00111345552 35789999999997432 599999875432 223466677777777777654
No 88
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ...
Probab=99.36 E-value=5.8e-12 Score=124.09 Aligned_cols=186 Identities=18% Similarity=0.156 Sum_probs=115.3
Q ss_pred CCCCCccccCCC---cceEEEEEEEcCCEEEecccccCCCceEEEEEcCC--------CcEEEEEEEEEcC-------CC
Q 008087 135 PNFSLPWQRKRQ---YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGS--------DTKYLATVLAIGT-------EC 196 (578)
Q Consensus 135 ~~~~~p~~~~~~---~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~--------g~~~~a~vv~~d~-------~~ 196 (578)
....+||+.... ....|+|.+|++.||||+|||+.....+.|.+... ...+..+.+..++ .+
T Consensus 8 ~~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAhC~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~ 87 (241)
T 2jkh_A 8 KDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDF 87 (241)
T ss_dssp CTTSSTTEEEEECTTSCEEEEEEECSSSEEEECGGGGGSCSSCEEEESCSBTTCCCSCCEEECEEEEEECTTCBTTTTBT
T ss_pred CCCCcCcEEEEEcCCCCcEEEEEEeeCCEEEEcHHHcCCCCcEEEEECCccCCCCCCCcEEEEeEEEEeCCCCCCCCCCC
Confidence 334566765432 24579999999999999999998777788887321 1234444455554 46
Q ss_pred CEEEEEEeeC-CCCCCeeeEEcCCC------CCCCCcEEEEeecCCCC-------cceEEEeEEeceeeeeecCCceeee
Q 008087 197 DIAMLTVEDD-EFWEGVLPVEFGEL------PALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILSYVHGSTELL 262 (578)
Q Consensus 197 DlAlLkv~~~-~~~~~~~~l~l~~~------~~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~~~~~~~~~~ 262 (578)
|||||+++.+ .+...+.|+.|... ...+..+++.||..... ...+..-+++...+...........
T Consensus 88 DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~ 167 (241)
T 2jkh_A 88 DIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSFIITQN 167 (241)
T ss_dssp CCEEEEESSCCCCBTTBCCCBCCCHHHHHHHTTTSSEEEEEESCBSSTTSCBCSBCEEEEEEEECHHHHHHHCSSCCCTT
T ss_pred cEEEEEECCcccCCCCEeeeEcCCCCcccccccCCCeEEEEecCCCCCCCCcCccccEeeeccccHHHhcccccCcCCCC
Confidence 9999999976 34456788888652 23478889999864321 1122333333322221111111112
Q ss_pred EEEEe-----cCCCCCCccceEEcc-CC--eEEEEEeccccccccCCceeeecchhHHHHHHHHHH
Q 008087 263 GLQID-----AAINSGNSGGPAFND-KG--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 263 ~i~~d-----a~i~~G~SGGPlvn~-~G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
+++.. ...|.|+|||||+.. +| .++||++....-......+....+...+.++++..+
T Consensus 168 ~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~ 233 (241)
T 2jkh_A 168 MFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233 (241)
T ss_dssp EEEESCSSSSCBCCTTTTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHTC
T ss_pred eEEeeCCCCCCccCcCcCCCeeEEEECCEEEEEEEEEECCCCCCCCCceEEEEhHHHHHHHHHHhc
Confidence 45542 357899999999965 45 599999875432222334667778888888877643
No 89
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H*
Probab=99.36 E-value=7e-12 Score=123.10 Aligned_cols=186 Identities=17% Similarity=0.180 Sum_probs=113.2
Q ss_pred CCCCCCccccCCCcceEEEEEEEcCCEEEecccccCC----CceEEEEEcCC------CcEEEEEEEEEcC--------C
Q 008087 134 EPNFSLPWQRKRQYSSSSSGFAIGGRRVLTNAHSVEH----YTQVKLKKRGS------DTKYLATVLAIGT--------E 195 (578)
Q Consensus 134 ~~~~~~p~~~~~~~~~~GsGfvI~~g~ILT~aHvV~~----~~~i~V~~~~~------g~~~~a~vv~~d~--------~ 195 (578)
.....+||+........|+|.+|++.||||+|||+.+ ...+.|.+... ...+..+-+..++ .
T Consensus 7 a~~~~~Pw~v~l~~~~~CgGtLI~~~~VLTAAhC~~~~~~~~~~~~v~~g~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~ 86 (242)
T 3tvj_B 7 AKPGDFPWQVLILGGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAVFIHEGYTHDAGFD 86 (242)
T ss_dssp CCTTSSTTEEEEESSEEEEEEEETTTEEEECHHHHSTTTTCSSCCEEEESCSBTTCSCCEEEEEEEEEECTTCCTTSCST
T ss_pred CCCCCCCCEEEEecCCcEEEEEecCCEEEECHHHCCCCCCCcceEEEEeccccccCcccceeeEEEEEeCCCCCCCCCCc
Confidence 3445677777655566899999999999999999953 45577776321 1233334344443 4
Q ss_pred CCEEEEEEeeC-CCCCCeeeEEcCCCC-----CCCCcEEEEeecCCCC------cceEEEeEEeceeeeee-cC-----C
Q 008087 196 CDIAMLTVEDD-EFWEGVLPVEFGELP-----ALQDAVTVVGYPIGGD------TISVTSGVVSRIEILSY-VH-----G 257 (578)
Q Consensus 196 ~DlAlLkv~~~-~~~~~~~~l~l~~~~-----~~g~~V~~iG~p~g~~------~~sv~~G~Is~~~~~~~-~~-----~ 257 (578)
+|||||+++.+ .+...+.|+.|.... ..++.+.+.||..... ...+...+++...+... .. .
T Consensus 87 ~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~ 166 (242)
T 3tvj_B 87 NDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRG 166 (242)
T ss_dssp TCCEEEEESSCCCCBTTBCCCBCCCTTGGGGSCTTCEEEEEESCCCTTSSCCSBCEEEEEEBCCHHHHHHHHHSTTSCTT
T ss_pred CcEEEEEECCccccCCCEecCCcCCCcccccccCCCEEEEEEeCCCCCCCcCccceEEeeeEEcHHHHHHhhccCCcccc
Confidence 69999999976 344578888887633 4578899999864321 11222233332222111 00 0
Q ss_pred ceeeeEEEEe-----cCCCCCCccceEEcc---CC--eEEEEEecc-ccccccCCceeeecchhHHHHHHHHH
Q 008087 258 STELLGLQID-----AAINSGNSGGPAFND---KG--KCVGIAFQS-LKHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 258 ~~~~~~i~~d-----a~i~~G~SGGPlvn~---~G--~vVGI~~~~-~~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
.....++++. ...|.|+|||||+.. +| .++||++.. ..-......+....+...+.++++..
T Consensus 167 ~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i 239 (242)
T 3tvj_B 167 SVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 239 (242)
T ss_dssp CCCTTEEEESCTTCCSBCCTTCTTCEEEEEETTTTEEEEEEEEEEEESSTTCTTCCEEEEEGGGGHHHHHHHH
T ss_pred cccCCeEEECCCCCCCccccCCCCCeEEEEeCCCCcEEEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHH
Confidence 1112345552 467899999999963 33 499999874 22111223456677777777776654
No 90
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2
Probab=99.35 E-value=1.8e-11 Score=118.94 Aligned_cols=165 Identities=19% Similarity=0.202 Sum_probs=103.5
Q ss_pred ceEEEEEEEcCCEEEecccccCCCceEEEEEcC--------CCcEEEEEEEEEcCC-------CCEEEEEEeeC-CCCCC
Q 008087 148 SSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRG--------SDTKYLATVLAIGTE-------CDIAMLTVEDD-EFWEG 211 (578)
Q Consensus 148 ~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~--------~g~~~~a~vv~~d~~-------~DlAlLkv~~~-~~~~~ 211 (578)
...|+|.+|++.||||+|||+. ..+.|.+.. ....+..+-+..++. +|||||+++.+ .+...
T Consensus 27 ~~~CgGtLI~~~~VLTAAhC~~--~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DIALl~L~~~~~~~~~ 104 (224)
T 3rp2_A 27 RVICGGFLISRQFVLTAAHCKG--REITVILGAHDVRKRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPA 104 (224)
T ss_dssp EEEEEEEESSSSEEEECGGGCC--SEEEEEESCSBTTSCCTTCEEEEEEEEEECTTCCSSSCCSCCEEEEESSCCCCBTT
T ss_pred EEEEEeEEeeCCEEEEchhcCC--CCcEEEEeccccCcCCCCcEEEEEEEEEECCCccCCCCCccEEEEEcCCCcccCCc
Confidence 4579999999999999999985 356666631 113344454555554 69999999876 34456
Q ss_pred eeeEEcCCCC---CCCCcEEEEeecCCC-------CcceEEEeEEeceeeeeecCCceeeeEEEEe-----cCCCCCCcc
Q 008087 212 VLPVEFGELP---ALQDAVTVVGYPIGG-------DTISVTSGVVSRIEILSYVHGSTELLGLQID-----AAINSGNSG 276 (578)
Q Consensus 212 ~~~l~l~~~~---~~g~~V~~iG~p~g~-------~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~d-----a~i~~G~SG 276 (578)
+.++.|.... ..|..+++.||.... ....+...+++...+..+... .....+++. ...|.|+||
T Consensus 105 v~pi~l~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~-~~~~~~Ca~~~~~~~~~C~GDsG 183 (224)
T 3rp2_A 105 VNVVPLPSPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYY-EYKFQVCVGSPTTLRAAFMGDSG 183 (224)
T ss_dssp BCCCCCCCTTCCCCTTCEEEEEESSEEETTEEECSBCEEEEEEEECGGGTTTTTCC-CTTTEEEECCTTSCCBCCTTTTT
T ss_pred ccceecCCcccCCCCCCEEEEEeCCCCCCCCCCCceeeEeeeeecChHHhcccccc-CcCCEEEecCCCCCCeeccCCCC
Confidence 7788776533 457889999985321 111233334443333211111 111234442 357789999
Q ss_pred ceEEccCCeEEEEEeccccccccCCceeeecchhHHHHHHHH
Q 008087 277 GPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDY 318 (578)
Q Consensus 277 GPlvn~~G~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l 318 (578)
|||+. ++.++||++.... .....+.+..+...+.++++.
T Consensus 184 gPl~~-~~~l~Gi~S~g~~--c~~~p~vyt~v~~y~~WI~~~ 222 (224)
T 3rp2_A 184 GPLLC-AGVAHGIVSYGHP--DAKPPAIFTRVSTYVPWINAV 222 (224)
T ss_dssp CEEEE-TTEEEEEEEECCT--TCCSCEEEEEHHHHHHHHHHH
T ss_pred CeEEE-cceeeEEEEECCC--CCCCCcEEEEHHHhHHHHHHH
Confidence 99998 5799999987543 222255667777777777664
No 91
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A
Probab=99.35 E-value=1.4e-11 Score=121.79 Aligned_cols=185 Identities=18% Similarity=0.198 Sum_probs=112.2
Q ss_pred CCCCccccCCC---cceEEEEEEEcCCEEEecccccCCC---ceEEEEEcCC--------CcEEEEEEEEEcC-CCCEEE
Q 008087 136 NFSLPWQRKRQ---YSSSSSGFAIGGRRVLTNAHSVEHY---TQVKLKKRGS--------DTKYLATVLAIGT-ECDIAM 200 (578)
Q Consensus 136 ~~~~p~~~~~~---~~~~GsGfvI~~g~ILT~aHvV~~~---~~i~V~~~~~--------g~~~~a~vv~~d~-~~DlAl 200 (578)
...+||+.... ....|+|.+|++.||||+|||+.+. ..+.|.+... .+.+...-++.++ .+||||
T Consensus 26 ~~~~Pw~v~l~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~~~DIAL 105 (247)
T 1ddj_A 26 PHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPTRKDIAL 105 (247)
T ss_dssp TTSSTTEEEEECTTSCEEEEEEEEETTEEEECGGGGTTCSCGGGCEEEESCSBSSSCCTTCEEEEEEEEEECTTSCSCEE
T ss_pred CCCCCcEEEEEcCCCCeEEEEEEeeCCEEEEcHHHcCCCCCCccEEEEEcccccCccCCceEEEEeeeEEcCCCCCcEEE
Confidence 34455554332 2357999999999999999999754 3567776321 1223333334443 589999
Q ss_pred EEEeeC-CCCCCeeeEEcCCCC---CCCCcEEEEeecCCCC------cceEEEeEEeceeeeeec--CCceeeeEEEEe-
Q 008087 201 LTVEDD-EFWEGVLPVEFGELP---ALQDAVTVVGYPIGGD------TISVTSGVVSRIEILSYV--HGSTELLGLQID- 267 (578)
Q Consensus 201 Lkv~~~-~~~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~------~~sv~~G~Is~~~~~~~~--~~~~~~~~i~~d- 267 (578)
|+++.+ .+...+.|+.|.... ..+..++++||..... ...+..-+++...+..+. .......+++..
T Consensus 106 l~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~~Ca~~ 185 (247)
T 1ddj_A 106 LKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGH 185 (247)
T ss_dssp EEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCCCSSSTTTTBCEEEEEEEECHHHHTSTTTTTTCCCTTEEEESC
T ss_pred EEeCCceeeCCCEEeeecCCcccCCCCCCEEEEEEcccCCCCCCCccceEEeeeecCHHHhcchhccCCCCcCCeEeecC
Confidence 999976 344567888886532 3478899999864321 122334444443332211 111112345542
Q ss_pred ----cCCCCCCccceEEccC-C--eEEEEEeccccccccCCceeeecchhHHHHHHHHHH
Q 008087 268 ----AAINSGNSGGPAFNDK-G--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 268 ----a~i~~G~SGGPlvn~~-G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
...|.|+|||||+..+ | .++||++....-......+...-+...+.++++..+
T Consensus 186 ~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~ 245 (247)
T 1ddj_A 186 LAGGTDSCQGDAGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMR 245 (247)
T ss_dssp SSSCCCBCCSCTTCEEEEECSSSEEEEEEECGGGCCBBTTBCEEEEEGGGSHHHHHHHHH
T ss_pred CCCCCccccCcCcCcEEEEECCcEEEEEEEEECCCCCCCCCCEEEEEhHHhHHHHHHHhh
Confidence 3578999999999643 3 699999875432222334556777777777776554
No 92
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Probab=99.35 E-value=1.7e-11 Score=119.17 Aligned_cols=181 Identities=18% Similarity=0.129 Sum_probs=109.3
Q ss_pred CCCCCCccccCCCcceEEEEEEEcCCEEEecccccCCC---ceEEEEEcC------CCcEEEEEEEEEcCC-------CC
Q 008087 134 EPNFSLPWQRKRQYSSSSSGFAIGGRRVLTNAHSVEHY---TQVKLKKRG------SDTKYLATVLAIGTE-------CD 197 (578)
Q Consensus 134 ~~~~~~p~~~~~~~~~~GsGfvI~~g~ILT~aHvV~~~---~~i~V~~~~------~g~~~~a~vv~~d~~-------~D 197 (578)
.....+||+.... ..|+|.+|++.||||+|||+.+. ..+.|.+.. +...+...-+..++. +|
T Consensus 7 a~~~~~Pw~v~l~--~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~D 84 (224)
T 3beu_A 7 AAQGEFPFMVRLS--MGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQSSSAVKVRSTKVLQAPGFTKETYGKD 84 (224)
T ss_dssp CCTTTSTTEEEET--TTEEEEEEETTEEEECGGGSCSSEEBCCCEEEESCSBTTCTTCEEEEEEEEEECTTCCCGGGSCC
T ss_pred CCCCCCCEEEEEC--CceeEEEeeCCEEEEChhhcCCCCCcceEEEEeeEeecCCCCceEEEEEEEEeCCCcCCCcCCCC
Confidence 3445678887654 35999999999999999999864 346676631 123444444455543 59
Q ss_pred EEEEEEeeCCCCCCeeeEEcCCCC-CCCCcEEEEeecCCCC-------cceEEEeEEeceeeeeecC-CceeeeEEEEe-
Q 008087 198 IAMLTVEDDEFWEGVLPVEFGELP-ALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILSYVH-GSTELLGLQID- 267 (578)
Q Consensus 198 lAlLkv~~~~~~~~~~~l~l~~~~-~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~~~~-~~~~~~~i~~d- 267 (578)
||||+++.+. .++++.+.... ..+..++++||..... ...+..-+++...+..... ......+++..
T Consensus 85 IALl~L~~~v---~~~~i~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~ 161 (224)
T 3beu_A 85 WALIKLAQPI---NQPTLKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVANEMICAGY 161 (224)
T ss_dssp CEEEEESSCC---CSCCCEECCSSTTSSSEEEEEESSCSSTTCCCCSBCEEEEEEEECHHHHHHHCSSCCCGGGEEEECC
T ss_pred EEEEEeCCCC---CCCccccccccccCCCEEEEEecCccCCCCcccceeeEeeCcccCHHHhhhhcCCccCCCCeEEecc
Confidence 9999999874 34566665432 2356889999864321 1122333343322221111 11111345542
Q ss_pred ----cCCCCCCccceEEccC--C--eEEEEEeccccccccCCceeeecchhHHHHHHHHH
Q 008087 268 ----AAINSGNSGGPAFNDK--G--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 268 ----a~i~~G~SGGPlvn~~--G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
...|.|+|||||+..+ | .++||++....-......+....+.....++++..
T Consensus 162 ~~~~~~~C~GDsGgPl~~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~ 221 (224)
T 3beu_A 162 DTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAA 221 (224)
T ss_dssp SSSSCBCCTTCTTCEEEEECTTSCEEEEEEEEEESSSSCTTCCEEEEEHHHHHHHHHHHH
T ss_pred CCCCCcCCCCcCCCeeEEecCCCCEEEEEEeccCCCCCCCCCCeEEEEHHHHHHHHHHHH
Confidence 3578999999999653 3 78999987543212233456677777777776644
No 93
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=99.35 E-value=2.5e-13 Score=143.40 Aligned_cols=137 Identities=11% Similarity=0.076 Sum_probs=53.1
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEEEEEe
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNITL 430 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v~l 430 (578)
.|++|..|.++|||++ | |++||+|++|||+++.+|.... +..++.....+..+.|+|.|++...++.+..
T Consensus 232 ~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~--------~~~~l~~~~~~~~v~l~v~r~~~~~~v~l~~ 303 (388)
T 3suz_A 232 PTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLAT--------CQGIIKGLKNQTQVKLNIVSCPPVTTVLIKR 303 (388)
T ss_dssp CCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTT--------HHHHTTTCTTCSCEEEEEEECCSCC------
T ss_pred CCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHH--------HHHHHHhccCCCccccccccccccceeeEee
Confidence 3689999999999999 8 9999999999999999995422 3455655556778999999998776655432
Q ss_pred cccccccCCCCCCCCCCceeeccEEEeehHHHHHHhchhhhhhhhhccccccccccccCCCceEEEEeecCCcCCCCCCC
Q 008087 431 ATHRRLIPSHNKGRPPSYYIIAGFVFSRCLYLISVLSMERIMNMKLRSSFWTSSCIQCHNCQMSSLLWCLRSPLCLNCFN 510 (578)
Q Consensus 431 ~~~~~~~~~~~~~~~p~~~~~~Gl~~~~~p~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~vvvs~v~A~~aGl~~GD 510 (578)
... ..+|+|..... .+ .-+..+++|+++||++||
T Consensus 304 ~~~-----------------~~~lG~~i~~g---~I--------------------------~~V~~gs~A~~aGL~~GD 337 (388)
T 3suz_A 304 PDL-----------------KYQLGFSVQNG---II--------------------------CSLMRGGIAERGGVRVGH 337 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCC-----------------CCccceEEecC---EE--------------------------EEeecCCHHHHcCCCCCC
Confidence 110 11233321100 00 134567899999999999
Q ss_pred EEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEec
Q 008087 511 KVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEY 544 (578)
Q Consensus 511 ~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R 544 (578)
+|++|||++|. +++++.++|++. ++.+.|++..
T Consensus 338 ~Il~VNg~~v~~~s~~~~~~~l~~~-~~~v~L~V~p 372 (388)
T 3suz_A 338 RIIEINGQSVVATAHEKIVQALSNS-VGEIHMKTMP 372 (388)
T ss_dssp ------------------------------------
T ss_pred EEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEe
Confidence 99999999997 678999999874 5566777644
No 94
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Probab=99.35 E-value=8e-12 Score=123.02 Aligned_cols=169 Identities=13% Similarity=0.152 Sum_probs=103.8
Q ss_pred eEEEEEEEcCCEEEecccccCC--CceEEEEEcC-------CCcEEEEEEEEEcCCC---------CEEEEEEeeC-CCC
Q 008087 149 SSSSGFAIGGRRVLTNAHSVEH--YTQVKLKKRG-------SDTKYLATVLAIGTEC---------DIAMLTVEDD-EFW 209 (578)
Q Consensus 149 ~~GsGfvI~~g~ILT~aHvV~~--~~~i~V~~~~-------~g~~~~a~vv~~d~~~---------DlAlLkv~~~-~~~ 209 (578)
..|+|.+|++.||||+|||+.+ ...+.|.+.. +.+.+..+-+..++.+ |||||+++.+ .+.
T Consensus 27 ~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIALl~L~~~v~~~ 106 (241)
T 1m9u_A 27 HSCGASLLSSTSALSASHCVDGVLPNNIRVIAGLWQQSDTSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLG 106 (241)
T ss_dssp EEEEEEECSSSEEEECHHHHTTCCGGGEEEEESCSBTTCCTTCEEEEEEEEEECTTTTCSSSTTTTCCEEEEESSCCCCC
T ss_pred eeeEEEEEeCCEEEecHHhCCCCCcceEEEEEEeecCCCCCCceEEEEEEEEeCCCcCCCCCcccccEEEEEecCccccC
Confidence 5799999999999999999986 3567787731 1234555555555544 9999999976 344
Q ss_pred CCeeeEEcCCC---CCCCCcEEEEeecCCCC-------cceEEEeEEeceeeee-ecC-Cc--eeeeEEEEe-----cCC
Q 008087 210 EGVLPVEFGEL---PALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILS-YVH-GS--TELLGLQID-----AAI 270 (578)
Q Consensus 210 ~~~~~l~l~~~---~~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~-~~~-~~--~~~~~i~~d-----a~i 270 (578)
..+.|+.|... ...|+.+++.||..... ...+..-+++...+.. +.. .. ....++++. ...
T Consensus 107 ~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~Ca~~~~~~~~~ 186 (241)
T 1m9u_A 107 GNIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGA 186 (241)
T ss_dssp SSCCCCCCCSCSSCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEBCCHHHHHHHHTTSTTCCCCTTEEEECCTTSCCBC
T ss_pred CCccccCcCCCcCCCCCCCEEEEEeCcccCCCCCcccceeEeeEEEEcHHHhhhhhcccCCCcccCCcEEECcCCCCCee
Confidence 56788888754 22578999999864321 1122222333222221 111 11 112345543 357
Q ss_pred CCCCccceEEccCC--eEEEEEecccc--cc--ccCCceeeecchhHHHHHHH
Q 008087 271 NSGNSGGPAFNDKG--KCVGIAFQSLK--HE--DVENIGYVIPTPVIMHFIQD 317 (578)
Q Consensus 271 ~~G~SGGPlvn~~G--~vVGI~~~~~~--~~--~~~~~~~aiPi~~i~~~l~~ 317 (578)
|.|+|||||+..+| .++||++...+ .. .....+...-+.....++++
T Consensus 187 C~GDSGgPL~~~~~~~~l~Gi~S~~~~~g~~C~~~~~p~vyt~V~~~~~WI~~ 239 (241)
T 1m9u_A 187 CNGDSGGPLNCPDGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGD 239 (241)
T ss_dssp CTTCTTCEEEEESSSEEEEEEEEECCBCTTSCBCTTSCEEEEEGGGTHHHHHH
T ss_pred ecCcCCccEEEeCCCEEEEEEEEEeccCCCCccCCCCCEEEEEhHHhHhHHhh
Confidence 89999999997545 89999987221 11 11234555666666666654
No 95
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A*
Probab=99.34 E-value=1.7e-11 Score=121.92 Aligned_cols=185 Identities=17% Similarity=0.122 Sum_probs=112.9
Q ss_pred CCCCccccCCC--cceEEEEEEEcCCEEEecccccCC---CceEEEEEcC--------CCcEEEEEEEEEcCC-------
Q 008087 136 NFSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEH---YTQVKLKKRG--------SDTKYLATVLAIGTE------- 195 (578)
Q Consensus 136 ~~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~---~~~i~V~~~~--------~g~~~~a~vv~~d~~------- 195 (578)
...+||+.... ....|+|.+|++.||||+|||+.. ...+.|.+.. +...+..+-+..++.
T Consensus 9 ~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAhC~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~ 88 (261)
T 3gyl_B 9 AGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQ 88 (261)
T ss_dssp TTSSTTEEEEEETTEEEEEEEECSSSEEEECGGGSCTTSCGGGEEEEESCSBTTSCCSSCEEECEEEEEECTTCCSTTCS
T ss_pred CCCCCcEEEEeeCCceEEEEEEEcCCEEEECHHHCCCCCCcccEEEEeCceeccCCCCCceEEEEEEEEECCCcCCCCCC
Confidence 34566665432 235799999999999999999963 3457777732 112344444555553
Q ss_pred CCEEEEEEeeC-CCCCCeeeEEcCCCC---CCCCcEEEEeecCCCC---------cceEEEeEEeceeeeeecC------
Q 008087 196 CDIAMLTVEDD-EFWEGVLPVEFGELP---ALQDAVTVVGYPIGGD---------TISVTSGVVSRIEILSYVH------ 256 (578)
Q Consensus 196 ~DlAlLkv~~~-~~~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~---------~~sv~~G~Is~~~~~~~~~------ 256 (578)
+|||||+++.+ .+...+.|+.|.... ..+..+++.||..... ...+...+++...+.....
T Consensus 89 ~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~ 168 (261)
T 3gyl_B 89 GDIALLQLSRPITFSRYIRPISLPAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPE 168 (261)
T ss_dssp CCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSCSBTTBCCCTTCBCEEEEEEEECHHHHHHHHTTTCCTT
T ss_pred CcEEEEEECCCccCCCceeccCCCCcccCCCCCCEEEEEecCCCCCCCCccCCccceEEEEEEECHHHhhhhhccccccc
Confidence 59999999876 344567888886432 3578899999864311 1233344444333321111
Q ss_pred --CceeeeEEEEe-----cCCCCCCccceEEcc-CC--eEEEEEeccccccccCCceeeecchhHHHHHHHHHH
Q 008087 257 --GSTELLGLQID-----AAINSGNSGGPAFND-KG--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 257 --~~~~~~~i~~d-----a~i~~G~SGGPlvn~-~G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
......++++. ...|.|+|||||+.. +| .++||++....-......+.+..+...+.++++..+
T Consensus 169 ~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~lvGI~S~g~~c~~~~~p~vyt~v~~~~~WI~~~i~ 242 (261)
T 3gyl_B 169 EPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKVT 242 (261)
T ss_dssp CCCCCCTTEEEESCSSSSCBCCTTTTTCEEEEEETTEEEEEEEECCCCCSSCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred ccccccCCeEeeCCCCCCCccCCCCCCCeeEEEeCCEEEEEEEEecCCCCCCCCCCCEEEEHHHhHHHHHHHHh
Confidence 01112345542 357899999999975 45 699999875432222334566777777777766543
No 96
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*
Probab=99.34 E-value=1.7e-11 Score=120.78 Aligned_cols=184 Identities=20% Similarity=0.221 Sum_probs=111.5
Q ss_pred CCCccccCCC-----cceEEEEEEEcCCEEEecccccCCC---ceEEEEEcC--------CCcEEEEEEEEEcC------
Q 008087 137 FSLPWQRKRQ-----YSSSSSGFAIGGRRVLTNAHSVEHY---TQVKLKKRG--------SDTKYLATVLAIGT------ 194 (578)
Q Consensus 137 ~~~p~~~~~~-----~~~~GsGfvI~~g~ILT~aHvV~~~---~~i~V~~~~--------~g~~~~a~vv~~d~------ 194 (578)
..+||+.... ....|+|.+|++.||||+|||+.+. ..+.|.+.. ....+..+-+..++
T Consensus 10 ~~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~ 89 (241)
T 2any_A 10 GEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSGILELSDITKDTPFSQIKEIIIHQNYKVSE 89 (241)
T ss_dssp TSSTTEEEEEEESSSEEEEEEEEEEETTEEEECGGGGSSCCCSTTEEEECSCSBGGGCCTTSCCBCEEEEEECTTCCTTS
T ss_pred CCCCcEEEEEEEcCCCceEEEEEEecCCEEEECHHHcCCCCCCccEEEEeeeeeccccccCceEEeeEEEEECCCCCCCC
Confidence 3455554432 2357999999999999999999764 346666521 12223344444544
Q ss_pred -CCCEEEEEEeeC-CCCCCeeeEEcCCC---CCCCCcEEEEeecCCCC-------cceEEEeEEeceeeeeecCC-ceee
Q 008087 195 -ECDIAMLTVEDD-EFWEGVLPVEFGEL---PALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILSYVHG-STEL 261 (578)
Q Consensus 195 -~~DlAlLkv~~~-~~~~~~~~l~l~~~---~~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~~~~~-~~~~ 261 (578)
.+|||||+++.+ .+...+.|+.|... ...++.++++||..... ...+..-+++...+...... ....
T Consensus 90 ~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~ 169 (241)
T 2any_A 90 GNHDIALIKLQAPLEYTEFQKPISLPSKGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDYKITQ 169 (241)
T ss_dssp SSSCCEEEEESSCCCCBTTBCCCCCCCSSCCSTTCSEEEEEESSCSSTTCCCCSBCEEEEEEEECHHHHHTTSCTTCSCT
T ss_pred CCCCeEEEEeCCcccCCCCcceeEcCCcccCCCCCCeEEEEecccCCCCCCcCchhheeEeEEeCHHHhhhHhccCCCCc
Confidence 469999999976 34456788888653 24578999999864321 11223334443322211111 1112
Q ss_pred eEEEEe-----cCCCCCCccceEEcc-CC--eEEEEEeccccccccCCceeeecchhHHHHHHHHHH
Q 008087 262 LGLQID-----AAINSGNSGGPAFND-KG--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 262 ~~i~~d-----a~i~~G~SGGPlvn~-~G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
.++++. ...|.|+|||||+.. +| .++||++....-......+.+.-+...+.++++..+
T Consensus 170 ~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g~~c~~~~~p~vyt~V~~~~~WI~~~~~ 236 (241)
T 2any_A 170 RMVCAGYKEGGKDACKGDSGGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKTQ 236 (241)
T ss_dssp TEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHS
T ss_pred CcEeecCCCCCCccCCCCCCCcEEEEECCEEEEEEEEEecCCCCCCCCCeEEEEHHHhHHHHHHHhh
Confidence 345542 357899999999965 45 699999875432222334566777777787776543
No 97
>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ...
Probab=99.33 E-value=1.7e-11 Score=124.33 Aligned_cols=194 Identities=16% Similarity=0.112 Sum_probs=116.4
Q ss_pred EEEeeeeCCCCCCccccCCC----cceEEEEEEEcCCEEEecccccCC--------CceEEEEEcCC---------CcEE
Q 008087 127 KVFCVHTEPNFSLPWQRKRQ----YSSSSSGFAIGGRRVLTNAHSVEH--------YTQVKLKKRGS---------DTKY 185 (578)
Q Consensus 127 ~I~~~~~~~~~~~p~~~~~~----~~~~GsGfvI~~g~ILT~aHvV~~--------~~~i~V~~~~~---------g~~~ 185 (578)
+|..........+||+.... ....|+|.+|++.||||+|||+.. ...+.|++... .+.+
T Consensus 30 rIvgG~~a~~~~~Pw~v~l~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~ 109 (289)
T 2bdy_A 30 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKIS 109 (289)
T ss_dssp -CBSCEECCTTSCTTEEEEEETTTTEEEEEEEECSSSEEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCTTTCEEE
T ss_pred eEECCEECCCCCCCCeEEEEECCCCCEEEEEEEecCCEEEEcHHhcccCccccccCcccEEEEEccccccccCCCcceee
Confidence 45555556666788876542 235799999999999999999942 34577777321 1122
Q ss_pred EEEEEEEcC--------CCCEEEEEEeeC-CCCCCeeeEEcCCC------CCCCCcEEEEeecCCCC-------------
Q 008087 186 LATVLAIGT--------ECDIAMLTVEDD-EFWEGVLPVEFGEL------PALQDAVTVVGYPIGGD------------- 237 (578)
Q Consensus 186 ~a~vv~~d~--------~~DlAlLkv~~~-~~~~~~~~l~l~~~------~~~g~~V~~iG~p~g~~------------- 237 (578)
..+-+..++ .+|||||+++.+ .+...+.|+.|... ...|..+++.||.....
T Consensus 110 ~v~~i~~Hp~y~~~~~~~~DIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~g~~~~v~GWG~~~~~~~~~~~~~~~~~ 189 (289)
T 2bdy_A 110 MLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 189 (289)
T ss_dssp EEEEEEECTTCBTTTTCBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHCCTTCEEEEEESSCSSCC-------CCCSB
T ss_pred eeEEEEECCCCCCCCCCCCeEEEEEECCccccCCcccccCCCCccccccccCCCCEEEEECCCcCCCccccCcccccccc
Confidence 333333332 369999999976 34456788888752 23578899999864211
Q ss_pred cceEEEeEEeceeeeeecCCceeeeEEEEe--------cCCCCCCccceEEcc---CC--eEEEEEeccccccccCCcee
Q 008087 238 TISVTSGVVSRIEILSYVHGSTELLGLQID--------AAINSGNSGGPAFND---KG--KCVGIAFQSLKHEDVENIGY 304 (578)
Q Consensus 238 ~~sv~~G~Is~~~~~~~~~~~~~~~~i~~d--------a~i~~G~SGGPlvn~---~G--~vVGI~~~~~~~~~~~~~~~ 304 (578)
...+..-+++...+...........+|+.. ...|.|+|||||+.. +| .++||++....-......+.
T Consensus 190 L~~~~v~i~~~~~C~~~~~~~i~~~~iCag~~~~~~~~~~~C~GDSGGPLv~~~~~~~~~~l~GIvS~g~~C~~~~~p~v 269 (289)
T 2bdy_A 190 LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGF 269 (289)
T ss_dssp CEEEEEEBCCHHHHHHTCSSCCCTTEEEECCCGGGCCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCTTCCEE
T ss_pred ceEEEEEEECHHHhhccccCcCCCCEEeccCCCCCCCCCccCCCCCccceEEEECCCCCEEEEEEEEECCCCCCCCCCEE
Confidence 111222223222221111111112345552 357899999999964 34 69999987543212223456
Q ss_pred eecchhHHHHHHHHHH
Q 008087 305 VIPTPVIMHFIQDYEK 320 (578)
Q Consensus 305 aiPi~~i~~~l~~l~~ 320 (578)
..-+...+.++++..+
T Consensus 270 yt~V~~y~~WI~~~i~ 285 (289)
T 2bdy_A 270 YTHVFRLKKWIQKVID 285 (289)
T ss_dssp EEETGGGHHHHHHHHH
T ss_pred EEEHHHHHHHHHHHHH
Confidence 6777777777776543
No 98
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} SCOP: b.47.1.2 PDB: 3g01_A
Probab=99.33 E-value=2.2e-11 Score=118.61 Aligned_cols=167 Identities=17% Similarity=0.134 Sum_probs=104.3
Q ss_pred ceEEEEEEEcCCEEEecccccCCCceEEEEEcC--------CCcEEEEEEEEEcCC-------CCEEEEEEeeC-CCCCC
Q 008087 148 SSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRG--------SDTKYLATVLAIGTE-------CDIAMLTVEDD-EFWEG 211 (578)
Q Consensus 148 ~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~--------~g~~~~a~vv~~d~~-------~DlAlLkv~~~-~~~~~ 211 (578)
...|+|.+|++.||||+|||+. ..+.|.+.. ....+..+-+..++. +|||||+++.+ .+...
T Consensus 27 ~~~CgGtLI~~~~VLTAAHC~~--~~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DIALl~L~~~~~~~~~ 104 (227)
T 3fzz_A 27 KMFCGGFLVRDKFVLTAAHCKG--RSMTVTLGAHNIKAKEETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRA 104 (227)
T ss_dssp EEEEEEEEEETTEEEECTTCCC--EEEEEEESCSBTTSCCTTCEEEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTT
T ss_pred eeEEEEEEEeCCEEEECcccCC--CCcEEEEcccccCCCCCCceEEEEEEEEECcCCCCCCCcCCEEEEEECCcCCCCCc
Confidence 4579999999999999999985 456666631 123344554555554 69999999876 34456
Q ss_pred eeeEEcCCCC---CCCCcEEEEeecCCCC-------cceEEEeEEeceeeee-ecCCceeeeEEEEe-----cCCCCCCc
Q 008087 212 VLPVEFGELP---ALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILS-YVHGSTELLGLQID-----AAINSGNS 275 (578)
Q Consensus 212 ~~~l~l~~~~---~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~-~~~~~~~~~~i~~d-----a~i~~G~S 275 (578)
+.|+.|.... ..|+.+++.||..... ...+...+++...+.. +.........++.. ...|.|+|
T Consensus 105 v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDs 184 (227)
T 3fzz_A 105 VRPLNLPRRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQSSYNRANEICVGDSKIKGASFEEDS 184 (227)
T ss_dssp BCCCCCCCTTCCCCTTCEEEEEESSCSSTTSCCCSBCEEEEEEBCCHHHHHHHHTTTCCTTTEEEECCCSSCBCCTTTTT
T ss_pred ccccCCCCcccCCCCCCEEEEEECCcccCCCCCCCeeeEEEeeeecHHHhhhhhccccCCCceEEEeCCCCCCcccccCC
Confidence 7888886533 4588999999864211 1122222332222221 11111111234442 35788999
Q ss_pred cceEEccCCeEEEEEeccccccccCCceeeecchhHHHHHHHHH
Q 008087 276 GGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 276 GGPlvn~~G~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
||||+. ++.++||++.... .....+.+..+...+.++++..
T Consensus 185 GgPl~~-~~~l~Gi~S~g~~--c~~~p~vyt~V~~~~~WI~~~i 225 (227)
T 3fzz_A 185 GGPLVC-KRAAAGIVSYGQT--DGSAPQVFTRVLSFVSWIKKTM 225 (227)
T ss_dssp TCEEEE-TTEEEEEEEECCT--TCSSSEEEEEGGGTHHHHHHHH
T ss_pred ccceEE-ecCCcEEEEECCC--CCCCCeEEEEhHHhHHHHHHHH
Confidence 999998 5799999987543 2223566677777777776654
No 99
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ...
Probab=99.33 E-value=2e-11 Score=120.04 Aligned_cols=183 Identities=18% Similarity=0.188 Sum_probs=110.8
Q ss_pred CCCccccCCC-----cceEEEEEEEcCCEEEecccccCCC---ceEEEEEcC--------CCcEEEEEEEEEcC------
Q 008087 137 FSLPWQRKRQ-----YSSSSSGFAIGGRRVLTNAHSVEHY---TQVKLKKRG--------SDTKYLATVLAIGT------ 194 (578)
Q Consensus 137 ~~~p~~~~~~-----~~~~GsGfvI~~g~ILT~aHvV~~~---~~i~V~~~~--------~g~~~~a~vv~~d~------ 194 (578)
..+||+.... ....|+|.+|++.||||+|||+.+. ..+.|.+.. +...+..+-+..++
T Consensus 10 ~~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~ 89 (238)
T 3bg8_A 10 GEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAE 89 (238)
T ss_dssp TSSTTEEEEEECSSSCEEEEEEEEEETTEEEECGGGGTTCCCGGGEEEECSCSBGGGCCTTSCCEEEEEEEECTTCCCGG
T ss_pred CCcCcEEEEEeecCCCcEEEEEEEeeCCEEEECHHHCCCCCCCceEEEEEeeccCCcCCCCceEEeeEEEEECCCCCCCC
Confidence 3455654332 2357999999999999999999764 456776521 23345555455554
Q ss_pred -CCCEEEEEEeeC-CCCCCeeeEEcCCC---CCCCCcEEEEeecCCCC-------cceEEEeEEeceeeeeecCC-ceee
Q 008087 195 -ECDIAMLTVEDD-EFWEGVLPVEFGEL---PALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILSYVHG-STEL 261 (578)
Q Consensus 195 -~~DlAlLkv~~~-~~~~~~~~l~l~~~---~~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~~~~~-~~~~ 261 (578)
.+|||||+++.+ .+...+.|+.|... ...+..+++.||..... ...+..-+++...+...... ....
T Consensus 90 ~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~ 169 (238)
T 3bg8_A 90 SGYDIALLKLETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITH 169 (238)
T ss_dssp GSCCCEEEEESSCCCCBTTBCCCBCCCGGGGSSCCCCEEEEESCCSSSSCCCCSBCEEEECCEECHHHHHHHCTTSCCCT
T ss_pred CCCcEEEEEECCccccCCCcccCCCCCCccCcCCCCeEEEEecCCCCCCCChhhhhcEeeEEEECHHHhhhhhcCCCCCC
Confidence 469999999976 34456788888753 24578899999864321 11222333433322211111 1112
Q ss_pred eEEEEe-----cCCCCCCccceEEcc-CC--eEEEEEeccccccccCCceeeecchhHHHHHHHHH
Q 008087 262 LGLQID-----AAINSGNSGGPAFND-KG--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 262 ~~i~~d-----a~i~~G~SGGPlvn~-~G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
.+++.. ...|.|+|||||+.. +| .++||++....-......+...-+...+.++++..
T Consensus 170 ~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~ 235 (238)
T 3bg8_A 170 KMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 235 (238)
T ss_dssp TEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHH
T ss_pred CeEeecCCCCCCCcCCCCCCcceEEEECCeEEEEEEEEECCCCCCCCCCcEEEeHHHHHHHHHHHH
Confidence 345542 357899999999975 45 59999987542212223455677777777776643
No 100
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Probab=99.33 E-value=1.1e-11 Score=121.06 Aligned_cols=172 Identities=16% Similarity=0.098 Sum_probs=106.4
Q ss_pred ceEEEEEEEcCCEEEecccccCCCceEEEEEcCC-----CcEEEEEEEEEcC-------CCCEEEEEEeeCCCCCCeeeE
Q 008087 148 SSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGS-----DTKYLATVLAIGT-------ECDIAMLTVEDDEFWEGVLPV 215 (578)
Q Consensus 148 ~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~-----g~~~~a~vv~~d~-------~~DlAlLkv~~~~~~~~~~~l 215 (578)
...|+|.+|++.||||+|||+.+...+.|.+... ...+..+-+..++ .+|||||++++..+...+.|+
T Consensus 27 ~~~CgGtLIs~~~VLTAAHC~~~~~~~~v~~G~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DiALl~L~~~~~~~~v~pi 106 (230)
T 2hlc_A 27 RVWCGGSLIDNKWILTAAHCVHDAVSVVVYLGSAVQYEGEAVVNSERIISHSMFNPDTYLNDVALIKIPHVEYTDNIQPI 106 (230)
T ss_dssp EEEEEEEEEETTEEEECHHHHTTEEEEEEEESCSBTTCCSEEEECSEEEECTTCBTTTTBTCCEEEECSCCCCCSSCCCC
T ss_pred CEEEEEEEeeCCEEEECHHHCCCCcceEEEEeeeecCCCCeEEEEEEEEECCCCCCCCccccEEEEEecCCCcCCcEeee
Confidence 4579999999999999999999877788887321 1233333334443 479999999943455678888
Q ss_pred EcCCCC-----CCCCcEEEEeecCCCC----cceEEEeEEeceeeeeecCC-ceeeeEEEEe----cCCCCCCccceEEc
Q 008087 216 EFGELP-----ALQDAVTVVGYPIGGD----TISVTSGVVSRIEILSYVHG-STELLGLQID----AAINSGNSGGPAFN 281 (578)
Q Consensus 216 ~l~~~~-----~~g~~V~~iG~p~g~~----~~sv~~G~Is~~~~~~~~~~-~~~~~~i~~d----a~i~~G~SGGPlvn 281 (578)
.|.... ..+..+++.||..... ...+..-+++...+...... .....+++.. ...|.|+|||||+.
T Consensus 107 cLp~~~~~~~~~~~~~~~v~GwG~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~C~GDSGgPl~~ 186 (230)
T 2hlc_A 107 RLPSGEELNNKFENIWATVSGWGQSNTDTVILQYTYNLVIDNDRCAQEYPPGIIVESTICGDTSDGKSPCFGDSGGPFVL 186 (230)
T ss_dssp BCCCGGGGGCCCTTCEEEEEESSCCSSCCCBCEEEEEEEECHHHHHTTSCTTSSCTTEEEECCTTSCBCCTTCTTCEEEE
T ss_pred EcCCccccccccCCcEEEEEeeeecCCCCceeEEEEEEEeCHHHhhhhhCCCcccCCeEEecCCCCCCcCCCCCCCeeEE
Confidence 887532 3578899999865422 11223333433322211111 1112245543 35789999999996
Q ss_pred c-CCeEEEEEecccccc-ccCCceeeecchhHHHHHHHHH
Q 008087 282 D-KGKCVGIAFQSLKHE-DVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 282 ~-~G~vVGI~~~~~~~~-~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
. ++.++||++...... .....+....+...+.++++..
T Consensus 187 ~~~~~l~Gi~S~g~~~~C~~~~p~vyt~V~~~~~WI~~~~ 226 (230)
T 2hlc_A 187 SDKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQNT 226 (230)
T ss_dssp GGGTEEEEEEEECCTTCTTSCCCEEEEEGGGGHHHHHHHH
T ss_pred CcCCEEEEEEEEeCCCCCCCCCCCEEEEhHHhHHHHHHhh
Confidence 4 469999998743111 1123344567777777776643
No 101
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Probab=99.33 E-value=5.2e-12 Score=122.20 Aligned_cols=157 Identities=20% Similarity=0.196 Sum_probs=99.9
Q ss_pred eEEEEEEEcCCEEEecccccCCC--ceE----EEEEcCC-----CcEEEEEEEEEcC--------CCCEEEEEEeeCCCC
Q 008087 149 SSSSGFAIGGRRVLTNAHSVEHY--TQV----KLKKRGS-----DTKYLATVLAIGT--------ECDIAMLTVEDDEFW 209 (578)
Q Consensus 149 ~~GsGfvI~~g~ILT~aHvV~~~--~~i----~V~~~~~-----g~~~~a~vv~~d~--------~~DlAlLkv~~~~~~ 209 (578)
..|+|++|++.||||+|||+.+. ..+ .|.+... +..+..+-+..++ .+|||||+++.+ +.
T Consensus 30 ~~CgGtLIs~~~VLTAAHCv~~~~~~~~~~~~~v~~G~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~DiAll~L~~~-~~ 108 (215)
T 1p3c_A 30 SSCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVNGSANMTEFYVPSGYINTGASQYDFAVIKTDTN-IG 108 (215)
T ss_dssp CEEEEEEEETTEEEECHHHHEETTTTEECCCCEEEETCBTTBCTTCCEEEEEEECCHHHHHHCCGGGCCEEEEESSC-HH
T ss_pred ceEEEEEEeCCEEEECccEeccCCCCccccceEEEEcccCCCCCCCeEEEEEEEeCCccccCCCcccCEEEEEECCC-Cc
Confidence 47999999999999999999643 344 6776321 2234444444433 469999999974 43
Q ss_pred CCeeeEEcCCC-CCCCCcEEEEeecCCC------CcceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCccceEEcc
Q 008087 210 EGVLPVEFGEL-PALQDAVTVVGYPIGG------DTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFND 282 (578)
Q Consensus 210 ~~~~~l~l~~~-~~~g~~V~~iG~p~g~------~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGPlvn~ 282 (578)
..+.++.|... ...|+.++++||+... ....+...+++...+. ........|.|+|||||+..
T Consensus 109 ~~v~pi~l~~~~~~~g~~~~~~Gwg~~~~~~~~~~l~~~~~~~~~~~~c~----------~~~~~~~~C~GDSGgPl~~~ 178 (215)
T 1p3c_A 109 NTVGYRSIRQVTNLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDTN----------LAYYTIDTFSGNSGSAMLDQ 178 (215)
T ss_dssp HHHCCCCBCCCSCCTTCEEEEEECCHHHHHHHSSCCCEEEEEECCEECSS----------EEEECCCCCTTCTTCEEECT
T ss_pred ccceeeecCCCcccCCCeEEEecCCCCCcccccceechhccCccCcccch----------heeeccccCCCCCCCeeEcc
Confidence 45777888753 3468999999997321 1112333333322221 11135678999999999988
Q ss_pred CCeEEEEEeccccccccCCceeeecchhHHHHHHHH
Q 008087 283 KGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDY 318 (578)
Q Consensus 283 ~G~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l 318 (578)
+|.++||++..... ....+...-+.....++++.
T Consensus 179 ~g~lvGi~S~g~~c--~~~p~v~t~v~~~~~WI~~~ 212 (215)
T 1p3c_A 179 NQQIVGVHNAGYSN--GTINGGPKATAAFVEFINYA 212 (215)
T ss_dssp TSCEEEECCEEEGG--GTEEEEEBCCHHHHHHHHHH
T ss_pred CCeEEEEEecccCC--CccCceeEechHHHHHHHHH
Confidence 89999999865431 12233445555666666554
No 102
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Probab=99.32 E-value=1.4e-11 Score=122.13 Aligned_cols=184 Identities=18% Similarity=0.136 Sum_probs=108.1
Q ss_pred CCCCccccCCC----cceEEEEEEEcCCEEEecccccC--------CCceEEEEEcCCC--------cE-EEEEEEEEcC
Q 008087 136 NFSLPWQRKRQ----YSSSSSGFAIGGRRVLTNAHSVE--------HYTQVKLKKRGSD--------TK-YLATVLAIGT 194 (578)
Q Consensus 136 ~~~~p~~~~~~----~~~~GsGfvI~~g~ILT~aHvV~--------~~~~i~V~~~~~g--------~~-~~a~vv~~d~ 194 (578)
...+||+.... ....|+|.+|++.||||+|||+. ....+.|.+.... .. ...+-+..++
T Consensus 9 ~~~~Pw~v~l~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~v~~i~~hp 88 (259)
T 3rm2_H 9 IGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHP 88 (259)
T ss_dssp TTSSTTEEEEEEETTEEEEEEEEECSSSEEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCTTTCEEEEEEEEEECT
T ss_pred CCCcCCEEEEEECCCCceEEEEEEEeCCEEEEcHHhCcccccccccCcccEEEEECcccccccccCcceeeEEEEEEECC
Confidence 34456655431 23479999999999999999995 2345677773211 11 2233333433
Q ss_pred --------CCCEEEEEEeeC-CCCCCeeeEEcCCCC------CCCCcEEEEeecCCCCc-------------ceEEEeEE
Q 008087 195 --------ECDIAMLTVEDD-EFWEGVLPVEFGELP------ALQDAVTVVGYPIGGDT-------------ISVTSGVV 246 (578)
Q Consensus 195 --------~~DlAlLkv~~~-~~~~~~~~l~l~~~~------~~g~~V~~iG~p~g~~~-------------~sv~~G~I 246 (578)
.+|||||+++.+ .+...+.|+.|.... ..|..+.+.||...... ..+...++
T Consensus 89 ~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (259)
T 3rm2_H 89 RYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 168 (259)
T ss_dssp TCBTTTTCBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHCCTTCEEEEEESCCSSCC-------CCCSBCEEEEEEBC
T ss_pred CCCCCCCCCCcEEEEEeCCceEcCCCcccccCCCccccccccCCCCEEEEeecCCCcCcCCccccccccccceEEEEEEe
Confidence 359999999976 344567888886522 35888999998643211 11222222
Q ss_pred eceeeeeecCCceeeeEEEEe--------cCCCCCCccceEEccC---C--eEEEEEeccccccccCCceeeecchhHHH
Q 008087 247 SRIEILSYVHGSTELLGLQID--------AAINSGNSGGPAFNDK---G--KCVGIAFQSLKHEDVENIGYVIPTPVIMH 313 (578)
Q Consensus 247 s~~~~~~~~~~~~~~~~i~~d--------a~i~~G~SGGPlvn~~---G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~ 313 (578)
+...+...........+++.. ...|.|+|||||+..+ | .++||++....-......+.+.-+...+.
T Consensus 169 ~~~~C~~~~~~~~~~~~~Cag~~~~~~~~~~~C~GDsGgPL~~~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~ 248 (259)
T 3rm2_H 169 ERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 248 (259)
T ss_dssp CHHHHHHTCSSCCCTTEEEECCCGGGSCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCTTCCEEEEETGGGHH
T ss_pred CHHHhhhhhcccCCCceEeeeccCCCCCCCcccCCCCCCeeEEEECCCCCEEEEEEEEECCCCCCCCCCeEEEEHHHhHH
Confidence 222221111111112345552 2688999999999643 3 79999987543222223456677777777
Q ss_pred HHHHHH
Q 008087 314 FIQDYE 319 (578)
Q Consensus 314 ~l~~l~ 319 (578)
++++..
T Consensus 249 WI~~~i 254 (259)
T 3rm2_H 249 WIQKVI 254 (259)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 103
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens}
Probab=99.32 E-value=5.4e-11 Score=116.42 Aligned_cols=183 Identities=15% Similarity=0.148 Sum_probs=110.9
Q ss_pred CCCCccccCCC--cceEEEEEEEcCCEEEecccccCCC---ceEEEEEcC----CCcEEEEEEEEEcC-------CCCEE
Q 008087 136 NFSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHY---TQVKLKKRG----SDTKYLATVLAIGT-------ECDIA 199 (578)
Q Consensus 136 ~~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~---~~i~V~~~~----~g~~~~a~vv~~d~-------~~DlA 199 (578)
...+||+.... ....|+|.+|++.||||+|||+... ..+.|.+.. ++..+..+-+..++ .+|||
T Consensus 9 ~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAhC~~~~~~~~~~~v~~G~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIA 88 (232)
T 2oq5_A 9 EGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTTYKNPARWTASFGVTIKPSKMKRGLRRIIVHEKYKHPSHDYDIS 88 (232)
T ss_dssp TTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGGSSCCCGGGEEEEESSBSTTCSEEEEEEEEEECTTCCTTCCTTCCE
T ss_pred CCCCCeeEEEEeCCCeeEEEEEEcCCEEEECHHHcCCCCCCceEEEEEeeEECCCceEEeEEEEEeCCCCCCCCCCCCEE
Confidence 34566665432 2357999999999999999999753 356777632 12334444444544 46999
Q ss_pred EEEEeeC-CCCCCeeeEEcCCCC---CCCCcEEEEeecCCCC-------cceEEEeEEeceeeeee-cC-CceeeeEEEE
Q 008087 200 MLTVEDD-EFWEGVLPVEFGELP---ALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILSY-VH-GSTELLGLQI 266 (578)
Q Consensus 200 lLkv~~~-~~~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~~-~~-~~~~~~~i~~ 266 (578)
||+++.+ .+...+.|+.|.... ..|+.+++.||..... ...+..-+++...+... .. ......+++.
T Consensus 89 Ll~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca 168 (232)
T 2oq5_A 89 LAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCA 168 (232)
T ss_dssp EEEESSCCCCCSSSCCCBCCCTTCCCCTTCEEEEEESCCSSTTCCCCSBCEEEEEEEECHHHHTSTTTTTTCCCTTEEEE
T ss_pred EEEecCCCccCCceeEeECCCccccCCCCCEEEEEECCccCCCCCCCceeeEeEEEEeCHHHcCCccccCCccCCCEEee
Confidence 9999976 344567888887532 3478999999864211 11223334443333211 01 1111234554
Q ss_pred e-----cCCCCCCccceEEccC--C--eEEEEEeccccccccCCceeeecchhHHHHHHHH
Q 008087 267 D-----AAINSGNSGGPAFNDK--G--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDY 318 (578)
Q Consensus 267 d-----a~i~~G~SGGPlvn~~--G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l 318 (578)
. ...|.|+|||||+..+ | .++||++....-......+.+.-+...+.++++.
T Consensus 169 ~~~~~~~~~C~GDsGgPL~~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~ 229 (232)
T 2oq5_A 169 GSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSK 229 (232)
T ss_dssp ECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSBTTBCEEEEETGGGHHHHHHH
T ss_pred cCCCCCCccCCCCCCCcEEEECCCCCEEEEEEEEeCCCCCCCCCCeEEEEhHHhHHHHHHH
Confidence 3 3578999999999643 3 6999998743221122345566777777777654
No 104
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A*
Probab=99.32 E-value=4.5e-11 Score=121.25 Aligned_cols=171 Identities=16% Similarity=0.154 Sum_probs=105.1
Q ss_pred eEEEEEEEcCCEEEecccccCCC---ceEEEEEcCC-------------CcEEEEEEEEEcC-------CCCEEEEEEee
Q 008087 149 SSSSGFAIGGRRVLTNAHSVEHY---TQVKLKKRGS-------------DTKYLATVLAIGT-------ECDIAMLTVED 205 (578)
Q Consensus 149 ~~GsGfvI~~g~ILT~aHvV~~~---~~i~V~~~~~-------------g~~~~a~vv~~d~-------~~DlAlLkv~~ 205 (578)
..|+|.+|++.||||+|||+... ..+.|.+... .+.+..+-+..++ .+|||||+++.
T Consensus 30 ~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~~~~V~~i~~Hp~y~~~~~~nDIALl~L~~ 109 (290)
T 1fiw_A 30 HVCGGSLLNSQWLLTAAHCFRIKKKVTDWRLIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITP 109 (290)
T ss_dssp EEEEEEEEETTEEEECGGGGSSCCSGGGEEEEESCSBCCTTCCSCCCTTCEEEEEEEEEECTTCBTTTTBTCCEEEEEES
T ss_pred eEEEEEEeeCCEEEECHHhCCCCCCCcceEEEecceEEeccCCCcCCCCceEEEEEEEEECCCCCCCCCCCCEEEEEECC
Confidence 47999999999999999999753 3567776311 1223333344443 36999999997
Q ss_pred C-CCCCCeeeEEcCCC----CCCCCcEEEEeecCCCC--------cceEEEeEEeceeeeee--cCCceeeeEEEEe---
Q 008087 206 D-EFWEGVLPVEFGEL----PALQDAVTVVGYPIGGD--------TISVTSGVVSRIEILSY--VHGSTELLGLQID--- 267 (578)
Q Consensus 206 ~-~~~~~~~~l~l~~~----~~~g~~V~~iG~p~g~~--------~~sv~~G~Is~~~~~~~--~~~~~~~~~i~~d--- 267 (578)
+ .+...+.|+.|... +..++.+++.||..... ...+..-+++...+... ........+|+..
T Consensus 110 ~v~~~~~v~PicLp~~~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~~~i~~~~iCag~~~ 189 (290)
T 1fiw_A 110 PVTCGHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYNGRIRSTNVCAGYPE 189 (290)
T ss_dssp CCCCBTTBCCCBCCCTTCCSCCSSCEEEEEESCCSSTTCSSCCSBCEEEEEEEECHHHHTSTTTTTTCCCTTEEEEECTT
T ss_pred ccccCCccccccCCCccccCcCCCCeEEEEEeccCCCCCCCCCceeeEEEEEEecHHHhccccccCCcCCCCEEEEecCC
Confidence 6 44456788888642 23478899999864211 12233444443333211 1111112345553
Q ss_pred --cCCCCCCccceEEccC---C--eEEEEEeccccccccCCceeeecchhHHHHHHHHH
Q 008087 268 --AAINSGNSGGPAFNDK---G--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 268 --a~i~~G~SGGPlvn~~---G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
...|.|+|||||+..+ | .++||++.+..-......+...-+...+.++++..
T Consensus 190 ~~~~~C~GDSGGPLv~~~~~~~~~~l~GIvS~g~~C~~~~~p~vyt~V~~y~~WI~~~~ 248 (290)
T 1fiw_A 190 GKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWIASKI 248 (290)
T ss_dssp CSSBCCTTCTTCEEEEECSSSSCEEEEEEEEECSSSSBTTBCEEEEESGGGHHHHHHHH
T ss_pred CCCeeCCCCCchheEEEECCCCCEEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHh
Confidence 3678999999999653 3 69999987543212223455667777777776654
No 105
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Probab=99.31 E-value=1.3e-11 Score=121.09 Aligned_cols=183 Identities=17% Similarity=0.165 Sum_probs=111.1
Q ss_pred CCCCccccCCC--cceEEEEEEEcCCEEEecccccCCCceEEEEEcCC--------CcEEEEEEEEEcC---------CC
Q 008087 136 NFSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGS--------DTKYLATVLAIGT---------EC 196 (578)
Q Consensus 136 ~~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~--------g~~~~a~vv~~d~---------~~ 196 (578)
...+||+.... ....|+|.+|++.||||+|||+.....+.|.+... ...+...-+..++ .+
T Consensus 9 ~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAhC~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~ 88 (235)
T 2wph_S 9 PGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNFNAAINTYNH 88 (235)
T ss_dssp TTSSTTEEEEESSSTTCEEEEEEETTEEEECGGGCCTTSCCEEEESCCBTTSCCSCCEEEEEEEEEECTTTTSSSSCCTT
T ss_pred CCCCCeEEEEccCCCeeEEEEEEeCCEEEECHHHCcCCCCEEEEEcccccCCCCCCcEEeeeEEEEeCCCCcccCCcCCC
Confidence 34566665432 23579999999999999999998777778877321 1233333344433 36
Q ss_pred CEEEEEEeeC-CCCCCeeeEEcCCCC-----CCCCcEEEEeecCCCC-------cceEEEeEEeceeeeeecCCceeeeE
Q 008087 197 DIAMLTVEDD-EFWEGVLPVEFGELP-----ALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILSYVHGSTELLG 263 (578)
Q Consensus 197 DlAlLkv~~~-~~~~~~~~l~l~~~~-----~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~~~~~~~~~~~ 263 (578)
|||||+++.+ .+...+.|+.|.... ..+..+++.||..... ...+..-+++...+...........+
T Consensus 89 DIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~ 168 (235)
T 2wph_S 89 DIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTITNNM 168 (235)
T ss_dssp CCEEEEESSCCCCBTTBCCCBCCCHHHHHHHHHTCEEEEEESSBSSTTSCBCSBCEEEEEEEECHHHHHHTCSSCCCTTE
T ss_pred CEEEEEECCcCcCCCCccccCCCCCcccccccCCccEEEEeCCCccCCCCccchheEeeeeeeCHHHhcCcccCCCCCCE
Confidence 9999999976 344567888886532 1367889999864211 11223334443332211111111234
Q ss_pred EEEe-----cCCCCCCccceEEcc-CC--eEEEEEeccccccccCCceeeecchhHHHHHHHH
Q 008087 264 LQID-----AAINSGNSGGPAFND-KG--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDY 318 (578)
Q Consensus 264 i~~d-----a~i~~G~SGGPlvn~-~G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l 318 (578)
++.. ...|.|+|||||+.. +| .++||++....-......+....+...+.++++.
T Consensus 169 ~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~ 231 (235)
T 2wph_S 169 FCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEK 231 (235)
T ss_dssp EEESCTTCSCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHH
T ss_pred EEeCCCCCCCccCCCCCCCceEEeECCeEEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHH
Confidence 5552 357899999999964 45 5999998754321223345667777777777664
No 106
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ...
Probab=99.31 E-value=2.1e-11 Score=121.01 Aligned_cols=186 Identities=18% Similarity=0.197 Sum_probs=114.0
Q ss_pred CCCCCccccCCC--cceEEEEEEEcCCEEEecccccCCCc---eEEEEEcCC--------CcEEEEEEEEEcC-------
Q 008087 135 PNFSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHYT---QVKLKKRGS--------DTKYLATVLAIGT------- 194 (578)
Q Consensus 135 ~~~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~~---~i~V~~~~~--------g~~~~a~vv~~d~------- 194 (578)
....+||+.... ....|+|.+|++.||||+|||+.+.. .+.|.+... ...+..+-+..++
T Consensus 8 ~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~ 87 (254)
T 2bz6_H 8 PKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTT 87 (254)
T ss_dssp CTTSSTTEEEEEETTEEEEEEEECSSSEEEECGGGGTTCSCGGGEEEEESCCBTTCCCSCCEEEEEEEEEEETTCCTTSC
T ss_pred CCCCcCCEEEEEeCCCcEEEEEEecCCEEEECHHHcCCCCCcceEEEEECCcccCCCCCCcEEEEEEEEEECCCCCCCCC
Confidence 334566665432 23579999999999999999998654 377877321 2334444444444
Q ss_pred CCCEEEEEEeeC-CCCCCeeeEEcCCCC------CCCCcEEEEeecCCCC-------cceEEEeEEeceeeeeecCC---
Q 008087 195 ECDIAMLTVEDD-EFWEGVLPVEFGELP------ALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILSYVHG--- 257 (578)
Q Consensus 195 ~~DlAlLkv~~~-~~~~~~~~l~l~~~~------~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~~~~~--- 257 (578)
.+|||||+++.+ .+...+.|+.|.... ..++.+++.||..... ...+..-+++...+......
T Consensus 88 ~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~ 167 (254)
T 2bz6_H 88 NHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGD 167 (254)
T ss_dssp SSCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTGGGCCEEEEEESCBSSTTSCBCSBCEEEEEEEECHHHHHHHSCCCTT
T ss_pred cCcEEEEEECCccccCCCccceECCCCccccccccCCCcEEEEeCcccCCCCCCChhheeeeeeeecHHHHhhhhhcccc
Confidence 369999999976 344567888886522 2478899999864311 11222333433222111100
Q ss_pred --ceeeeEEEEe-----cCCCCCCccceEEcc-CC--eEEEEEeccccccccCCceeeecchhHHHHHHHHHH
Q 008087 258 --STELLGLQID-----AAINSGNSGGPAFND-KG--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 258 --~~~~~~i~~d-----a~i~~G~SGGPlvn~-~G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
.....++++. ...|.|+|||||+.. +| .++||++....-......+.+.-+...+.++++..+
T Consensus 168 ~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~ 240 (254)
T 2bz6_H 168 SPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMR 240 (254)
T ss_dssp CCCCCTTEEEESCSSSSCBCCGGGTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHT
T ss_pred CCccCCCEEeecCCCCCCccccccCCCceEEeECCEEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence 1112345552 357899999999965 45 599999875432122334567778888888877664
No 107
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}
Probab=99.31 E-value=2.7e-11 Score=121.97 Aligned_cols=170 Identities=18% Similarity=0.143 Sum_probs=101.9
Q ss_pred ceEEEEEEEcCCEEEecccccCCC------ceEEEEEcCC-------------------CcEEEEEEEEEcC--------
Q 008087 148 SSSSSGFAIGGRRVLTNAHSVEHY------TQVKLKKRGS-------------------DTKYLATVLAIGT-------- 194 (578)
Q Consensus 148 ~~~GsGfvI~~g~ILT~aHvV~~~------~~i~V~~~~~-------------------g~~~~a~vv~~d~-------- 194 (578)
...|+|.+|++.||||+|||+.+. ..+.|++... ...+..+-+..++
T Consensus 50 ~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~ 129 (278)
T 2olg_A 50 QFACGGSLINNRYIVTAAHCVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKD 129 (278)
T ss_dssp EEEEEEEECSSSEEEECGGGTSTHHHHHTCEEEEEEESCSBTTCSSCEETTTTEECSSCCEEECEEEEEECTTCCTTCSS
T ss_pred ceeEEEEEEeCCEEEEhHHhCCCcccccccceeEEEeCcccCCCCccccccccccCCCCceEEeeEEEEECCCCcCCCCC
Confidence 357999999999999999999752 3567776310 1223333333433
Q ss_pred -CCCEEEEEEeeC-CCCCCeeeEEcCCCC---CCCCcEEEEeecCCCC------cceEEEeEEeceeeeeecCC---cee
Q 008087 195 -ECDIAMLTVEDD-EFWEGVLPVEFGELP---ALQDAVTVVGYPIGGD------TISVTSGVVSRIEILSYVHG---STE 260 (578)
Q Consensus 195 -~~DlAlLkv~~~-~~~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~------~~sv~~G~Is~~~~~~~~~~---~~~ 260 (578)
.+|||||+++.+ .+...+.|+.|.... ..|+.++++||..... ...+..-+++...+...... ...
T Consensus 130 ~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~g~~~~v~GWG~t~~~~~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~ 209 (278)
T 2olg_A 130 RYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRTETGQYSTIKQKLAVPVVHAEQCAKTFGAAGVRVR 209 (278)
T ss_dssp CTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESCCSSSCCCCSBCEEEEEEBCCGGGGGGGGSSTTCCCC
T ss_pred CCCeEEEEEECCCCcCCCCcCccCcCCCCCCcCCCCEEEEEcCCcCCCCCccchhhcccccccCHHHHHHHhccccccCC
Confidence 479999999976 344567888887532 4588999999864321 11233333443333221110 111
Q ss_pred eeEEEEe----cCCCCCCccceEEcc--CC--eEEEEEeccccccccCCceeeecchhHHHHHHH
Q 008087 261 LLGLQID----AAINSGNSGGPAFND--KG--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQD 317 (578)
Q Consensus 261 ~~~i~~d----a~i~~G~SGGPlvn~--~G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~ 317 (578)
..+|+.. ...|.|+|||||+.. +| .++||++....-......+...-+...+.++++
T Consensus 210 ~~~~Ca~~~~~~~~C~GDSGGPL~~~~~~~~~~l~GIvS~g~~C~~~~~p~vyt~V~~y~~WI~~ 274 (278)
T 2olg_A 210 SSQLCAGGEKAKDSCGGDSGGPLLAERANQQFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIEG 274 (278)
T ss_dssp TTEEEECCTTCTTCCCCCTTCEEEEEEGGGEEEEEEEEEECCBCSTTCBCEEEEEGGGGHHHHHT
T ss_pred CceEeeecCCCCeeCCCccCcceEEEcCCCcEEEEEEEEECCCCCCCCCCcEEeEHHHHHHHHHH
Confidence 2345553 357899999999964 34 699999875321111223455666666666543
No 108
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Probab=99.31 E-value=3.3e-11 Score=119.11 Aligned_cols=186 Identities=17% Similarity=0.144 Sum_probs=113.1
Q ss_pred CCCCCccccCCCc-ceEEEEEEEcCCEEEecccccCCC---ceEEEEEcCC--------CcEEEEEEEEEc--------C
Q 008087 135 PNFSLPWQRKRQY-SSSSSGFAIGGRRVLTNAHSVEHY---TQVKLKKRGS--------DTKYLATVLAIG--------T 194 (578)
Q Consensus 135 ~~~~~p~~~~~~~-~~~GsGfvI~~g~ILT~aHvV~~~---~~i~V~~~~~--------g~~~~a~vv~~d--------~ 194 (578)
....+||+..... ...|+|.+|++.||||+|||+.+. ..+.|.+... ...+..+-+..+ .
T Consensus 8 ~~~~~Pw~v~l~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~ 87 (248)
T 2r0l_A 8 LPGSHPWLAAIYIGDSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPS 87 (248)
T ss_dssp CTTSSTTEEEEEETTEEEEEEEEETTEEEECGGGGTTCCCGGGEEEEESCCBTTCCCSSCEEECEEEEEECTTCCTTSTT
T ss_pred CCCCCCeEEEEEcCCceEEEEEEcCCEEEECHHHcCCCCCcCcEEEEEEeEEcCCCCCccEEEeeeEEEeCCccCcCCCC
Confidence 3345667654432 357999999999999999999764 4678877321 123333333333 2
Q ss_pred CCCEEEEEEeeC-----CCCCCeeeEEcCCCC---CCCCcEEEEeecCCCCc--------ceEEEeEEeceeeeee-cCC
Q 008087 195 ECDIAMLTVEDD-----EFWEGVLPVEFGELP---ALQDAVTVVGYPIGGDT--------ISVTSGVVSRIEILSY-VHG 257 (578)
Q Consensus 195 ~~DlAlLkv~~~-----~~~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~~--------~sv~~G~Is~~~~~~~-~~~ 257 (578)
.+|||||+++.+ .+...+.|+.|.... ..|+.+++.||...... ..+..-+++...+... ..+
T Consensus 88 ~~DiALl~L~~~~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~ 167 (248)
T 2r0l_A 88 DHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYG 167 (248)
T ss_dssp TTCCEEEEECCSSSCSSCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSSSCCSCCSBCEEEEEEBCCHHHHTSTTTTG
T ss_pred CCCEEEEEeCCcccccccCCCcEEEEECCCCCCCCCCCCEEEEEEccccCCCCCCCCchheEEEEeeeCHHHhCCccccC
Confidence 469999999876 344568888887532 35789999998643211 1122223332222211 000
Q ss_pred -ceeeeEEEEe-----cCCCCCCccceEEcc-CC--eEEEEEeccccccccCCceeeecchhHHHHHHHHHH
Q 008087 258 -STELLGLQID-----AAINSGNSGGPAFND-KG--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 258 -~~~~~~i~~d-----a~i~~G~SGGPlvn~-~G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
.....+++.. ...|.|+|||||+.. +| .++||++....-......+.+..+...+.++++..+
T Consensus 168 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~ 239 (248)
T 2r0l_A 168 ADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIR 239 (248)
T ss_dssp GGCCTTEEEESCSSSCCBCCTTCTTCEEEEEETTEEEEEEEEEECSTTTCTTCCEEEEEGGGGHHHHHHHHC
T ss_pred CcCCCCEEeECCCCCCCcCCCCccCCeEEEEECCcEEEEEEEEeCCCCCCCCCCcEEEEHHHHHHHHHHHhc
Confidence 1112345542 357899999999975 45 699999875432122334667778877888777654
No 109
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ...
Probab=99.30 E-value=3.4e-11 Score=118.68 Aligned_cols=171 Identities=16% Similarity=0.190 Sum_probs=104.4
Q ss_pred ceEEEEEEEcCCEEEecccccCCC---ceEEEEEcCC--------CcEEEEEEEEEcC---------CCCEEEEEEeeC-
Q 008087 148 SSSSSGFAIGGRRVLTNAHSVEHY---TQVKLKKRGS--------DTKYLATVLAIGT---------ECDIAMLTVEDD- 206 (578)
Q Consensus 148 ~~~GsGfvI~~g~ILT~aHvV~~~---~~i~V~~~~~--------g~~~~a~vv~~d~---------~~DlAlLkv~~~- 206 (578)
...|+|.+|++.||||+|||+.+. ..+.|.+... ...+..+-+..++ .+|||||+++.+
T Consensus 28 ~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIALl~L~~~~ 107 (247)
T 3mhw_U 28 TYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKE 107 (247)
T ss_dssp EEEEEEEEEETTEEEECGGGTTTSCCGGGEEEEESCCBSSSCCTTCEEEEEEEEEECTTCEEC-CCEESCCEEEEEECTT
T ss_pred ceEEEEEEEeCCEEEEcHHhCcCCCCCccEEEEeccccccCCCCCCEEEEEEEEEECCCCCCCcCCCCCcEEEEEeCCcc
Confidence 357999999999999999999753 3467776311 2234444444444 359999999875
Q ss_pred ----CCCCCeeeEEcCCC---CCCCCcEEEEeecCCCC--------cceEEEeEEeceeeeeec-C-CceeeeEEEEe--
Q 008087 207 ----EFWEGVLPVEFGEL---PALQDAVTVVGYPIGGD--------TISVTSGVVSRIEILSYV-H-GSTELLGLQID-- 267 (578)
Q Consensus 207 ----~~~~~~~~l~l~~~---~~~g~~V~~iG~p~g~~--------~~sv~~G~Is~~~~~~~~-~-~~~~~~~i~~d-- 267 (578)
.+...+.++.|... ...|+.+++.||..... ...+...+++...+.... . ......+++..
T Consensus 108 ~~~~~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~ 187 (247)
T 3mhw_U 108 GRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADP 187 (247)
T ss_dssp SCCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSTTCSSCCSBCEEEEEEEECHHHHTSTTTTGGGCCTTEEEEECT
T ss_pred ccccccCCcccccccCCCcCCCCCCCEEEEEecCCcCCCCcccchhheeeEEEEEChHHhcCccccCCcCCCCeEecCCC
Confidence 23456778888652 34588999999864311 112233333333322110 0 01111245542
Q ss_pred ---cCCCCCCccceEEcc-CC--eEEEEEeccccccccCCceeeecchhHHHHHHHH
Q 008087 268 ---AAINSGNSGGPAFND-KG--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDY 318 (578)
Q Consensus 268 ---a~i~~G~SGGPlvn~-~G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l 318 (578)
...|.|+|||||+.. +| .++||++....-......+....+...+.++++.
T Consensus 188 ~~~~~~C~GDSGgPl~~~~~~~~~l~Gi~S~g~~c~~~~~p~vyt~V~~~~~WI~~~ 244 (247)
T 3mhw_U 188 QWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSH 244 (247)
T ss_dssp TSCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSBTTBCEEEEEGGGCHHHHHHH
T ss_pred CCCCccCCCCCCCeEEEEECCCEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHHH
Confidence 367899999999964 44 5999998754322223345667777777777654
No 110
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2
Probab=99.30 E-value=2.6e-11 Score=120.23 Aligned_cols=171 Identities=14% Similarity=0.104 Sum_probs=104.5
Q ss_pred ceEEEEEEEcCCEEEecccccCCCceEEEEEcCC---------CcEEEEEEEEEcC-------CCCEEEEEEeeC-CCCC
Q 008087 148 SSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGS---------DTKYLATVLAIGT-------ECDIAMLTVEDD-EFWE 210 (578)
Q Consensus 148 ~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~---------g~~~~a~vv~~d~-------~~DlAlLkv~~~-~~~~ 210 (578)
...|+|.+|++.||||+|||+.+...+.|.+... ...+..+-+..++ .+|||||+++.+ .+..
T Consensus 40 ~~~CgGtLIs~~~VLTAAHC~~~~~~~~V~~G~~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~ 119 (251)
T 1pyt_D 40 RHTCGGTLITPNHVLTAAHCISNTLTYRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGD 119 (251)
T ss_dssp EEEEEEEEEETTEEEECGGGCCTTCCEEEEESCSBTTCSCCSSCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCCS
T ss_pred ceEEEeEEecCCEEEECHHHhCCCceEEEEEcccccccCCCCCcEEEEEEEEEECCCCCCCCCCCCEEEEEECCCcccCC
Confidence 3579999999999999999999877888887321 1233444444544 469999999876 3445
Q ss_pred CeeeEEcCCCC---CCCCcEEEEeecCCCCc-------ceEEEeEEeceeeeeec--CCceeeeEEEEe----cCCCCCC
Q 008087 211 GVLPVEFGELP---ALQDAVTVVGYPIGGDT-------ISVTSGVVSRIEILSYV--HGSTELLGLQID----AAINSGN 274 (578)
Q Consensus 211 ~~~~l~l~~~~---~~g~~V~~iG~p~g~~~-------~sv~~G~Is~~~~~~~~--~~~~~~~~i~~d----a~i~~G~ 274 (578)
.+.|+.|.... ..+..+++.||...... ..+..-+++...+.... .......+|+.. ...|.|+
T Consensus 120 ~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~C~GD 199 (251)
T 1pyt_D 120 TIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAGGDGVISACNGD 199 (251)
T ss_dssp SCCCCBCCCTTCCCCTTCEEEECBCCCSSCCSCCCSBCBCCEEECBCHHHHTSTTTTTTTCCTTEEEECCSCSSCCCCSC
T ss_pred CeeeeEcCCCcccCCCCCEEEEEecccCCCCCCcccchheeEeEeeCHHHcchhhccCCCcCCCeEEecCCCCCccCCCC
Confidence 67888887532 34788999998643211 11122222222221110 011112345553 2578999
Q ss_pred ccceEEcc-CC--eEEEEEecccc--ccccCCceeeecchhHHHHHHHH
Q 008087 275 SGGPAFND-KG--KCVGIAFQSLK--HEDVENIGYVIPTPVIMHFIQDY 318 (578)
Q Consensus 275 SGGPlvn~-~G--~vVGI~~~~~~--~~~~~~~~~aiPi~~i~~~l~~l 318 (578)
|||||+.. +| .++||++.... -......+.+.-+...+.++++.
T Consensus 200 SGgPL~~~~~~~~~l~GI~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~ 248 (251)
T 1pyt_D 200 SGGPLNCQADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQK 248 (251)
T ss_dssp TTCEEEEESSSSEEEEEEEEECCSSCTTBTTBCEEEEEGGGGHHHHHHH
T ss_pred CCCceEEEECCCEEEEEEEEECCCCCCCCCCCCeEEEEHHHHHHHHHHH
Confidence 99999965 45 69999987431 11112345566667666766654
No 111
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0
Probab=99.30 E-value=1.4e-11 Score=120.01 Aligned_cols=169 Identities=21% Similarity=0.214 Sum_probs=104.7
Q ss_pred EEEEEEEcCCEEEecccccCC--CceEEEEEcCC-------CcEEEEEEEEEc------CCCCEEEEEEeeCC-CCC-Ce
Q 008087 150 SSSGFAIGGRRVLTNAHSVEH--YTQVKLKKRGS-------DTKYLATVLAIG------TECDIAMLTVEDDE-FWE-GV 212 (578)
Q Consensus 150 ~GsGfvI~~g~ILT~aHvV~~--~~~i~V~~~~~-------g~~~~a~vv~~d------~~~DlAlLkv~~~~-~~~-~~ 212 (578)
.|+|.+|++.||||+|||+.+ ...+.|.+... +..+..+-+..+ ..+|||||+++.+. +.. .+
T Consensus 27 ~CgGtLI~~~~VLTAAHC~~~~~~~~~~v~~g~~~~~~~~~~~~~~v~~i~~h~y~~~~~~~DIALl~L~~~v~~~~~~v 106 (228)
T 3h7o_A 27 TCGGAILSQWFVLTAAHCVFDQKPETIVIQYESTNLWEDPGKSDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKS 106 (228)
T ss_dssp EEEEEESSSSEEEECHHHHTTSCGGGCEEEESCSBTTTBCCEEECCEEEEEESSCBTTTTBTCCEEEEESSCCCCCSSSS
T ss_pred EeeeEEeeCCEEEEcHHhcccCCCCcEEEEecccccccCCCceeeeEEEEEccccCCCCccCCEEEEEECCccccccccc
Confidence 799999999999999999954 34566666321 111222222322 24799999999763 333 56
Q ss_pred eeEEcCCC---CCCCCcEEEEeecCCCC-------cceEEEeEEeceeeeeecCC-ceeeeEEEEe---cCCCCCCccce
Q 008087 213 LPVEFGEL---PALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILSYVHG-STELLGLQID---AAINSGNSGGP 278 (578)
Q Consensus 213 ~~l~l~~~---~~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~~~~~-~~~~~~i~~d---a~i~~G~SGGP 278 (578)
.|+.|... ...++.+++.||..... ...+...+++...+...... .....+++.. ...|.|+||||
T Consensus 107 ~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~C~GDsGgP 186 (228)
T 3h7o_A 107 KPAKLPDIEFRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYGPIFLSLQVFCAQKVGVSLESGDAGDP 186 (228)
T ss_dssp CCCBCCCTTCCCCTTCEEEEEECCCSSCSCGGGGBCEEEEEEEECHHHHHHHHTTSCCCSSEEEEECTTCCCCGGGTTCE
T ss_pred ccccCCccccCCCCCCeeEEEEEecCCCCCCcccccccceeEEEcHHHHHHHhcCccCCceEEecCCCCCcCCCCCCCCc
Confidence 78888753 34688999999864321 12233444443333221111 1112244443 46789999999
Q ss_pred EEccCCeEEEEEeccccccccCCceeeecchhHHHHHHHHHH
Q 008087 279 AFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 279 lvn~~G~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
|+. +++++||++...... ....+...-+...+.++++..+
T Consensus 187 l~~-~~~l~Gi~S~g~~c~-~~~p~vyt~v~~~~~WI~~~i~ 226 (228)
T 3h7o_A 187 TVQ-QDTLVGVAAYFPKRP-EGAPEVFTKVGSYVSWIQDIIK 226 (228)
T ss_dssp EEE-TTEEEEEECCCTTCC-TTCCEEEEEGGGTHHHHHHHHT
T ss_pred cee-cCeEEEEEeecCcCC-CCCCcEEEEHHHHHHHHHHHhh
Confidence 998 688999998754321 1334566777777777777653
No 112
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Probab=99.30 E-value=5.2e-11 Score=117.90 Aligned_cols=171 Identities=18% Similarity=0.157 Sum_probs=105.1
Q ss_pred ceEEEEEEEcCCEEEecccccCCC---ceEEEEEcCC--------CcEEEEEEEEEcC-------CCCEEEEEEeeC---
Q 008087 148 SSSSSGFAIGGRRVLTNAHSVEHY---TQVKLKKRGS--------DTKYLATVLAIGT-------ECDIAMLTVEDD--- 206 (578)
Q Consensus 148 ~~~GsGfvI~~g~ILT~aHvV~~~---~~i~V~~~~~--------g~~~~a~vv~~d~-------~~DlAlLkv~~~--- 206 (578)
...|+|.+|++.||||+|||+... ..+.|.+... ...+..+-+..++ .+|||||+++.+
T Consensus 29 ~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~ 108 (252)
T 1rtf_B 29 RFLCGGILISSCWILSAAHCFQERFPPHHLTVILGRTYRVVPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSR 108 (252)
T ss_dssp EEEEEEEECSSSEEEECGGGGTTCCCGGGEEEEESCSBSSSCCTTCEEEEEEEEEECTTCCTTTCTTCCEEEEECCSSSC
T ss_pred CEEEEEEEEeCCEEEECHHHCCCCCCcccEEEEeCcccccCCCCcceEEEEEEEEeCCCCCcCCCCCCEEEEEECCcccc
Confidence 357999999999999999999753 4577877321 2334444444544 469999999876
Q ss_pred --CCCCCeeeEEcCCCC---CCCCcEEEEeecCCCC--------cceEEEeEEeceeeeeec--CCceeeeEEEEe----
Q 008087 207 --EFWEGVLPVEFGELP---ALQDAVTVVGYPIGGD--------TISVTSGVVSRIEILSYV--HGSTELLGLQID---- 267 (578)
Q Consensus 207 --~~~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~--------~~sv~~G~Is~~~~~~~~--~~~~~~~~i~~d---- 267 (578)
.+...+.|+.|.... ..+..+++.||..... ...+..-+++...+.... .......+++..
T Consensus 109 ~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~ 188 (252)
T 1rtf_B 109 CAQESSVVRTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRS 188 (252)
T ss_dssp CSCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSTTCSSCCSBCEEEEEEECCGGGSSTTTTTTCCCCTTEEEEECCC-
T ss_pred ccccCCceeceeCCCccccCCCCCEEEEEEcCCCCCCCccccchheEeeeEEecHHHhhhhhccCCCCCCCEEEecCCCC
Confidence 233467888886532 3468899999864321 112233333333332111 011111244542
Q ss_pred -------cCCCCCCccceEEcc-CC--eEEEEEeccccccccCCceeeecchhHHHHHHHH
Q 008087 268 -------AAINSGNSGGPAFND-KG--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDY 318 (578)
Q Consensus 268 -------a~i~~G~SGGPlvn~-~G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l 318 (578)
...|.|+|||||+.. +| .++||++....-......+.+.-+...+.++++.
T Consensus 189 ~~~~~~~~~~C~GDsGgPL~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~ 249 (252)
T 1rtf_B 189 GGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDN 249 (252)
T ss_dssp -----CCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHH
T ss_pred CCccCCCCccccCCCcCceEEEeCCcEEEEEEEEEcCCCCCCCCCeEEEEHHHHHHHHHHh
Confidence 357899999999965 45 7999998754321122345567777777777654
No 113
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B
Probab=99.29 E-value=2.3e-11 Score=119.07 Aligned_cols=181 Identities=14% Similarity=0.108 Sum_probs=108.4
Q ss_pred CCCccccCCC--cceEEEEEEEcCCEEEecccccCCC----ceEEEEEcC---------CCcEEEEEEEEEcCC------
Q 008087 137 FSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHY----TQVKLKKRG---------SDTKYLATVLAIGTE------ 195 (578)
Q Consensus 137 ~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~----~~i~V~~~~---------~g~~~~a~vv~~d~~------ 195 (578)
..+||+.... ....|+|.+|++.||||+|||+.+. ..+.|.+.. ....+..+-+..++.
T Consensus 10 ~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~ 89 (235)
T 4dgj_A 10 GAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLHMKSNLTSPQTVPRLIDEIVINPHYNRRRK 89 (235)
T ss_dssp TSSTTEEEEEETTEEEEEEEECSSSEEEECHHHHTTSCSSGGGEEEEESCCBTTCCSCTTCEEEEEEEEEECTTCBTTTT
T ss_pred CCCCcEEEEeeCCCeEEEEEEeeCCEEEECHHhcCCCCCCCccEEEEEeeecccccCCCceeEEeEEEEEECCCCCCCCC
Confidence 3456655432 2357999999999999999999542 346666631 112233444455554
Q ss_pred -CCEEEEEEeeC-CCCCCeeeEEcCCCC---CCCCcEEEEeecCCCC-------cceEEEeEEeceeeeeecCC-ceeee
Q 008087 196 -CDIAMLTVEDD-EFWEGVLPVEFGELP---ALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILSYVHG-STELL 262 (578)
Q Consensus 196 -~DlAlLkv~~~-~~~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~~~~~-~~~~~ 262 (578)
+|||||+++.+ .+...+.|+.|.... ..|+.+++.||..... ...+...+++...+...... .....
T Consensus 90 ~~DiALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~ 169 (235)
T 4dgj_A 90 DNDIAMMHLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMPEYNITEN 169 (235)
T ss_dssp BTCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSBSSTTCCBCSBCEEEEEEEECHHHHHHHCTTSCCCTT
T ss_pred CCeEEEEEECCccccCCcccccCCCCcccCCCCCCEEEEEecccCCCCCccchhheEeEeeecCHHHhhhhccCccCCCC
Confidence 69999999976 344567888887533 3578999999864211 11233344443333221111 11123
Q ss_pred EEEEe-----cCCCCCCccceEEcc-CC--eEEEEEeccccccccCCceeeecchhHHHHHHH
Q 008087 263 GLQID-----AAINSGNSGGPAFND-KG--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQD 317 (578)
Q Consensus 263 ~i~~d-----a~i~~G~SGGPlvn~-~G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~ 317 (578)
++++. ...|.|+|||||+.. +| .++||++....-......+.+..+...+.++++
T Consensus 170 ~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~Gi~S~g~~c~~~~~p~vyt~V~~~~~WI~~ 232 (235)
T 4dgj_A 170 MICAGYEEGGIDSCQGDSGGPLMCQENNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQS 232 (235)
T ss_dssp EEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGTHHHHHT
T ss_pred eEeecCCCCCCccCCCCCCCeEEEEECCcEEEEEEEEEcCCCCCCCCCEEEeeHHHHHHHHHH
Confidence 45552 257899999999965 34 499999875432222234556666666666654
No 114
>2jde_A Urokinase-type plasminogen activator; plasminogen activation, EGF-like domain, blood coagulation, inhibitor complex, UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Probab=99.29 E-value=4.7e-11 Score=119.95 Aligned_cols=170 Identities=15% Similarity=0.166 Sum_probs=105.0
Q ss_pred eEEEEEEEcCCEEEecccccCCC---ceEEEEEcCC--------CcEEEEEEEEEcC---------CCCEEEEEEeeC--
Q 008087 149 SSSSGFAIGGRRVLTNAHSVEHY---TQVKLKKRGS--------DTKYLATVLAIGT---------ECDIAMLTVEDD-- 206 (578)
Q Consensus 149 ~~GsGfvI~~g~ILT~aHvV~~~---~~i~V~~~~~--------g~~~~a~vv~~d~---------~~DlAlLkv~~~-- 206 (578)
..|+|.+|++.||||+|||+.+. ..+.|.+... +..+..+-+..++ .+|||||+++.+
T Consensus 52 ~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIALl~L~~~~~ 131 (276)
T 2jde_A 52 YVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEG 131 (276)
T ss_dssp EEEEEEEEETTEEEECGGGTTTSCCGGGEEEEESCCBSSSCCTTCEEEEEEEEEECTTCEECSSCEESCCEEEEEECTTS
T ss_pred eeeeeEEeeCCEEEEcHHhccCCCCcccEEEEecccccCCCCCCcEEEEEEEEEECCCCCCCCCcCCCcEEEEEeCCccc
Confidence 47999999999999999999753 3567776321 2234444444444 359999999875
Q ss_pred ---CCCCCeeeEEcCC---CCCCCCcEEEEeecCCCC--------cceEEEeEEeceeeeeec-C-CceeeeEEEEe---
Q 008087 207 ---EFWEGVLPVEFGE---LPALQDAVTVVGYPIGGD--------TISVTSGVVSRIEILSYV-H-GSTELLGLQID--- 267 (578)
Q Consensus 207 ---~~~~~~~~l~l~~---~~~~g~~V~~iG~p~g~~--------~~sv~~G~Is~~~~~~~~-~-~~~~~~~i~~d--- 267 (578)
.+...+.++.|.. ....|..+++.||..... ...+...+++...+.... . ......+|+..
T Consensus 132 ~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~ 211 (276)
T 2jde_A 132 RCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQ 211 (276)
T ss_dssp CCCCCBTTBCCCBCCBTTBCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEECHHHHTSTTTTGGGSCTTEEEEECTT
T ss_pred cccccCCceEccCCCCcccCCCCCCEEEEEECCccCCCCcccchhhhhceecccChHHhCcccccCccCCCCeEEecCCC
Confidence 3445678888864 234588999999864321 112233344433332110 0 01112245542
Q ss_pred --cCCCCCCccceEEcc-CC--eEEEEEeccccccccCCceeeecchhHHHHHHHH
Q 008087 268 --AAINSGNSGGPAFND-KG--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDY 318 (578)
Q Consensus 268 --a~i~~G~SGGPlvn~-~G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l 318 (578)
...|.|+|||||+.. +| .++||++....-......+....+...+.++++.
T Consensus 212 ~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~ 267 (276)
T 2jde_A 212 WKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSH 267 (276)
T ss_dssp SCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHT
T ss_pred CCCcccccccCcceEEEeCCcEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHHH
Confidence 367899999999964 44 5999998754322223345667777777777664
No 115
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A
Probab=99.28 E-value=4.6e-11 Score=120.61 Aligned_cols=192 Identities=17% Similarity=0.134 Sum_probs=115.4
Q ss_pred EEeeeeCCCCCCccccCCCc-ceEEEEEEEcCCEEEecccccCCC---ceEEEEEcCC--------CcEEEEEEEEEcC-
Q 008087 128 VFCVHTEPNFSLPWQRKRQY-SSSSSGFAIGGRRVLTNAHSVEHY---TQVKLKKRGS--------DTKYLATVLAIGT- 194 (578)
Q Consensus 128 I~~~~~~~~~~~p~~~~~~~-~~~GsGfvI~~g~ILT~aHvV~~~---~~i~V~~~~~--------g~~~~a~vv~~d~- 194 (578)
|..........+||+..... ...|+|.+|++.||||+|||+.+. ..+.|.+... ...+..+-+..++
T Consensus 36 IvgG~~a~~~~~Pw~v~l~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~hp~ 115 (283)
T 1yc0_A 36 IIGGSSSLPGSHPWLAAIYIGDSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYTL 115 (283)
T ss_dssp CBSCEECCTTSSTTEEEEEETTEEEEEEEEETTEEEECGGGGTTCCCGGGEEEEESCCBTTCCCSSCEEECEEEEEECTT
T ss_pred eECCeECCCCCCCeEEEEEcCCcEEEEEEeeCCEEEECHHHcCCCCCCceEEEEEeeeecccCCCceEEEeeEEEEecCc
Confidence 33444444456667654422 357999999999999999999764 4678877321 1233333333332
Q ss_pred -------CCCEEEEEEeeC-----CCCCCeeeEEcCCCC---CCCCcEEEEeecCCCC--------cceEEEeEEeceee
Q 008087 195 -------ECDIAMLTVEDD-----EFWEGVLPVEFGELP---ALQDAVTVVGYPIGGD--------TISVTSGVVSRIEI 251 (578)
Q Consensus 195 -------~~DlAlLkv~~~-----~~~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~--------~~sv~~G~Is~~~~ 251 (578)
.+|||||+++.+ .+...+.|+.|.... ..|+.++++||..... ...+..-+++...+
T Consensus 116 y~~~~~~~~DIALl~L~~~~~~~v~~~~~v~picLp~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~L~~~~v~i~~~~~C 195 (283)
T 1yc0_A 116 YSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKC 195 (283)
T ss_dssp CCTTSTTTTCCEEEEECCBTTBSSCCBTTBCCCBCCCTTCCCCTTCEEEEEESSCSBTTBCSCCSBCEEEEEEBCCHHHH
T ss_pred cccCCCCCCceEEEEeCCCccccccccCceeeeECCCCcCCCCCCCEEEEEEeCccCCCCCccCchheEeEEEEECHHHh
Confidence 469999999876 344568888887532 3578999999864311 11222233332222
Q ss_pred eee-cCC-ceeeeEEEEe-----cCCCCCCccceEEcc-CC--eEEEEEeccccccccCCceeeecchhHHHHHHHHH
Q 008087 252 LSY-VHG-STELLGLQID-----AAINSGNSGGPAFND-KG--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 252 ~~~-~~~-~~~~~~i~~d-----a~i~~G~SGGPlvn~-~G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
... ..+ .....+|+.. ...|.|+|||||+.. +| .++||++.+..-......+....+...+.++++..
T Consensus 196 ~~~~~~~~~~~~~~iCa~~~~~~~~~C~GDSGgPL~~~~~g~~~l~GIvS~g~~C~~~~~p~vyt~V~~y~~WI~~~i 273 (283)
T 1yc0_A 196 SSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRI 273 (283)
T ss_dssp TSTTTTGGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEETTEEEEEEEEEECSTTTCTTCCEEEEEGGGGHHHHHHHC
T ss_pred cCccccCCcCCCCEEeeCCCCCCCccCCCCCCCceEEEECCcEEEEEEEEECCCCCCCCCCeEEEEhhhHHHHHHHHh
Confidence 211 011 1112345552 357899999999975 45 59999987543212233456677777777777654
No 116
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Probab=99.28 E-value=2.5e-11 Score=119.85 Aligned_cols=183 Identities=19% Similarity=0.173 Sum_probs=110.0
Q ss_pred CCCccccCCCc-----ceEEEEEEEcCCEEEecccccCC----CceEEEEEcC-----CCcEEEEEEEEEcC-------C
Q 008087 137 FSLPWQRKRQY-----SSSSSGFAIGGRRVLTNAHSVEH----YTQVKLKKRG-----SDTKYLATVLAIGT-------E 195 (578)
Q Consensus 137 ~~~p~~~~~~~-----~~~GsGfvI~~g~ILT~aHvV~~----~~~i~V~~~~-----~g~~~~a~vv~~d~-------~ 195 (578)
..+||+..... ...|+|.+|++.||||+|||+.. ...+.|.+.. .++.+..+-+..++ .
T Consensus 10 ~~~Pw~v~l~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~v~~g~~~~~~~~~~~~v~~i~~Hp~y~~~~~~ 89 (245)
T 2f9n_A 10 SKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQLREQHLYYQDQLLPVSRIIVHPQFYIIQTG 89 (245)
T ss_dssp TSCTTEEEEEEESSSEEEEEEEEEEETTEEEECGGGGCSSCCCGGGEEEECSCSBTTTTCCCBCEEEEEECTTCCSSCCT
T ss_pred CCCCcEEEEEEcCCCcceEEEEEEeeCCEEEECHHhCCCCCCCcceEEEEeCCcccccCceEEEEEEEEECCCccCCCCC
Confidence 34566554322 34799999999999999999953 2457777632 12334444444554 3
Q ss_pred CCEEEEEEeeC-CCCCCeeeEEcCCCC---CCCCcEEEEeecCCCC---------cceEEEeEEeceeeeee-cC-----
Q 008087 196 CDIAMLTVEDD-EFWEGVLPVEFGELP---ALQDAVTVVGYPIGGD---------TISVTSGVVSRIEILSY-VH----- 256 (578)
Q Consensus 196 ~DlAlLkv~~~-~~~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~---------~~sv~~G~Is~~~~~~~-~~----- 256 (578)
+|||||+++.+ .+...+.|+.|.... ..|+.++++||..... ...+..-+++...+... ..
T Consensus 90 ~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~ 169 (245)
T 2f9n_A 90 ADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTG 169 (245)
T ss_dssp TCCEEEEESSCCCCCSSSCCCBCCCTTCCCCTTCCEEEEESCCSBTTBCCCTTCBCEEEECCEECHHHHHHHHHTTCCSC
T ss_pred CcEEEEEeCCCCcCCCCccccCCCCcccCCCCCCEEEEEEeCCCCCCCCCCccccceEEEEEEcCHHHhhhhhccccccc
Confidence 69999999986 344567888886532 3578899999864211 11222333433222111 00
Q ss_pred ---CceeeeEEEEe---cCCCCCCccceEEcc-CC--eEEEEEeccccccccCCceeeecchhHHHHHHHHH
Q 008087 257 ---GSTELLGLQID---AAINSGNSGGPAFND-KG--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 257 ---~~~~~~~i~~d---a~i~~G~SGGPlvn~-~G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
......+++.. ...|.|+|||||+.. +| .++||++....-......+...-+...+.++++..
T Consensus 170 ~~~~~~~~~~~Ca~~~~~~~C~GDSGgPL~~~~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~ 241 (245)
T 2f9n_A 170 DDVRIIRDDMLCAGNSQRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV 241 (245)
T ss_dssp TTSCCSCTTEEEECCSSSBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHS
T ss_pred ccccccccccEeecCCCCCcCCCCCCCceEEEECCEEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHHh
Confidence 00111245542 357899999999965 56 68999987543212223456677777777776653
No 117
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.28 E-value=2.2e-11 Score=138.59 Aligned_cols=148 Identities=14% Similarity=0.109 Sum_probs=103.9
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE--EEEE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI--LNFN 427 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~--~~~~ 427 (578)
..|++|..|.++|||++ | |+.||+|++|||+.+.++.... +..++. ..|+.+.|+|.|++.. ..++
T Consensus 88 ~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~--------~~~~l~--~~g~~v~l~v~R~~~~~~~~~~ 157 (721)
T 2xkx_A 88 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSA--------AVEALK--EAGSIVRLYVMRRKPPAEKVME 157 (721)
T ss_pred CCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHH--------HHHHhh--ccccccceEEEeccccccccee
Confidence 45899999999999999 9 9999999999999999986421 122332 3688999999998854 2344
Q ss_pred EEecccccccCCCCCCCCCCceeeccEEEeeh-HHHHHHhchhhhhhhhhccccccccccccCCCceEEEEe----ecCC
Q 008087 428 ITLATHRRLIPSHNKGRPPSYYIIAGFVFSRC-LYLISVLSMERIMNMKLRSSFWTSSCIQCHNCQMSSLLW----CLRS 502 (578)
Q Consensus 428 v~l~~~~~~~~~~~~~~~p~~~~~~Gl~~~~~-p~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~vvvs~----v~A~ 502 (578)
+++.... . -.||.+... ... ..+...++++.. ++|+
T Consensus 158 v~l~k~~-------~--------~lG~~i~~~~~~~------------------------~~~~~~gv~V~~V~~gs~A~ 198 (721)
T 2xkx_A 158 IKLIKGP-------K--------GLGFSIAGGVGNQ------------------------HIPGDNSIYVTKIIEGGAAH 198 (721)
T ss_pred eeeeeec-------C--------CCceeeccCCCcc------------------------ccCCCCceEEEEeCCCCchh
Confidence 4443210 0 013333221 000 001124566654 4899
Q ss_pred cCC-CCCCCEEEEeCCeecCCH--HHHHHHHHhcCCCeEEEEEecCeEEE
Q 008087 503 PLC-LNCFNKVLAFNGNPVKNL--KSLANMVENCDDEFLKFDLEYDQVVV 549 (578)
Q Consensus 503 ~aG-l~~GD~I~~VNG~~V~~~--~~l~~~l~~~~~~~v~l~v~R~~~~~ 549 (578)
++| |+.||+|++|||++|.++ .++..++++. ++.+.|+|.|++...
T Consensus 199 ~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~-~~~v~l~V~R~g~~~ 247 (721)
T 2xkx_A 199 KDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT-YDVVYLKVAKPSNAY 247 (721)
T ss_pred hcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHcC-CCeEEEEEEeCCccc
Confidence 999 999999999999999985 6788888764 668999999987653
No 118
>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Probab=99.27 E-value=2.3e-11 Score=125.75 Aligned_cols=191 Identities=16% Similarity=0.182 Sum_probs=115.7
Q ss_pred EEEeeeeCCCCCCccccCCCcceEEEEEEEcCCEEEecccccCC-------CceEEEEEcCCC-------cEEEEEEEEE
Q 008087 127 KVFCVHTEPNFSLPWQRKRQYSSSSSGFAIGGRRVLTNAHSVEH-------YTQVKLKKRGSD-------TKYLATVLAI 192 (578)
Q Consensus 127 ~I~~~~~~~~~~~p~~~~~~~~~~GsGfvI~~g~ILT~aHvV~~-------~~~i~V~~~~~g-------~~~~a~vv~~ 192 (578)
+|..........+||+........|+|.+|++.||||+|||+.. ...+.|.+.... ..+..+-+..
T Consensus 89 rIvgG~~a~~~~~Pw~v~l~~~~~CgGsLIs~~~VLTAAHCv~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~V~~i~~ 168 (329)
T 1md8_A 89 RIIGGQKAKMGNFPWQVFTNIHGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSV 168 (329)
T ss_dssp -CBSCCBCCTTSCTTEEEEESSSEEEEEEETTTEEEECGGGTSCTTC-----CCCCEEESCSBHHHHHHHCCCCEEEEEE
T ss_pred cccCCEECCCCCCCCeEeeccCCCcceEEecCCEEEecCCEEEeCCcccCCCceEEEEeccccccccccccceeeEEEEE
Confidence 45555555666788987665556799999999999999999973 234567763211 1122333333
Q ss_pred cC----------CCCEEEEEEeeC-CCCCCeeeEEcCCCC---CCCCcEEEEeecCCCC-----cceEEEeEEeceeeee
Q 008087 193 GT----------ECDIAMLTVEDD-EFWEGVLPVEFGELP---ALQDAVTVVGYPIGGD-----TISVTSGVVSRIEILS 253 (578)
Q Consensus 193 d~----------~~DlAlLkv~~~-~~~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~-----~~sv~~G~Is~~~~~~ 253 (578)
++ .+|||||+++.+ .+...+.|+.|.... ..|..+++.||..... ...+..-+++...+..
T Consensus 169 Hp~y~~~~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~t~~~~~~~L~~~~v~i~~~~~C~~ 248 (329)
T 1md8_A 169 HPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACEN 248 (329)
T ss_dssp CSSCCSSCTTCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCBCSSSBCSBCEEEEEEBCCHHHHHH
T ss_pred CCCcccccCCCCCccEEEEEECCcccCCCceEccccCCCccccCCCCEEEEEeCCCCCCCCCccceEEEEEEcCHHHHHH
Confidence 33 359999999976 444568888887533 3578899999864321 1122333333222211
Q ss_pred ec-----CCceeeeEEEEe-----cCCCCCCccceEEcc---CC--eEEEEEeccccccccCCceeeecchhHHHHHHHH
Q 008087 254 YV-----HGSTELLGLQID-----AAINSGNSGGPAFND---KG--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDY 318 (578)
Q Consensus 254 ~~-----~~~~~~~~i~~d-----a~i~~G~SGGPlvn~---~G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l 318 (578)
.. .......+|+.. ...|.|+|||||+.. +| .++||++.+..- ..+.+...-+...+.++++.
T Consensus 249 ~~~~~~~~~~~~~~~iCAg~~~~~~d~C~GDSGGPL~~~~~~~~~~~l~GIvS~G~~C--~~~~gvyT~V~~y~~WI~~~ 326 (329)
T 1md8_A 249 WLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGC--SRGYGFYTKVLNYVDWIKKE 326 (329)
T ss_dssp HHHHTTCCCCCCTTEEEESCTTCSCBCCTTTTTCEEEEEETTTTEEEEEEEEEECSSS--SSSCEEEEEGGGTHHHHHHH
T ss_pred HhhcccccccCCCCeEeeecCCCCCcCCCCccccceEEEECCCCcEEEEEEEEECCCc--CCCCcEEEEHHHHHHHHHHH
Confidence 10 001111345552 357899999999863 23 599999875432 22456667777777777664
Q ss_pred H
Q 008087 319 E 319 (578)
Q Consensus 319 ~ 319 (578)
.
T Consensus 327 i 327 (329)
T 1md8_A 327 M 327 (329)
T ss_dssp H
T ss_pred H
Confidence 4
No 119
>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Probab=99.26 E-value=8.4e-11 Score=123.54 Aligned_cols=194 Identities=15% Similarity=0.115 Sum_probs=119.3
Q ss_pred EEEeeeeCCCCCCccccCCC--cceEEEEEEEcCCEEEecccccCC----CceEEEEEcC------CCcEEEEEEEEEcC
Q 008087 127 KVFCVHTEPNFSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEH----YTQVKLKKRG------SDTKYLATVLAIGT 194 (578)
Q Consensus 127 ~I~~~~~~~~~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~----~~~i~V~~~~------~g~~~~a~vv~~d~ 194 (578)
+|..........+||+.... ....|+|.+|++.||||+|||+.. ...+.|.+.. .+..+..+-+..++
T Consensus 117 rIvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHCv~~~~~~~~~~~V~~G~~~~~~~~~~~~~V~~i~~Hp 196 (372)
T 1z8g_A 117 RIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHG 196 (372)
T ss_dssp -CBSCEECCTTSSTTEEEEEETTEEEEEEEESSSSEEEECGGGCCGGGCCGGGEEEEESCSBTTCTTSEEECEEEEEEET
T ss_pred ceECCEECCCCCCCcEEEEEeCCceEEEEEEecCCEEEEChhhcCCCCCccceEEEEEeeEeccCCCCcEEEEEEEEECC
Confidence 45555555666788887653 245799999999999999999942 2457777632 12234444444443
Q ss_pred C-------------CCEEEEEEeeC-CCCCCeeeEEcCCCC---CCCCcEEEEeecCCCC-------cceEEEeEEecee
Q 008087 195 E-------------CDIAMLTVEDD-EFWEGVLPVEFGELP---ALQDAVTVVGYPIGGD-------TISVTSGVVSRIE 250 (578)
Q Consensus 195 ~-------------~DlAlLkv~~~-~~~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~ 250 (578)
. +|||||+++.+ .+...+.|+.|.... ..|+.+++.||..... ...+..-+++...
T Consensus 197 ~y~~~~~~~~~~~~nDIALlkL~~pv~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~t~~~~~~~~~L~~~~v~ii~~~~ 276 (372)
T 1z8g_A 197 GYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDV 276 (372)
T ss_dssp TCGGGTCTTCCCCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEEECHHH
T ss_pred CccccccCCCCCCCccEEEEEECCCCCCCCceeccccCCcccCCCCCCEEEEEecCCCCCCCCCCceeeEEEEEecChHH
Confidence 3 59999999976 344568888887532 3478899999864321 1223344444433
Q ss_pred eeee--cCCceeeeEEEEe-----cCCCCCCccceEEccC-----C--eEEEEEeccccccccCCceeeecchhHHHHHH
Q 008087 251 ILSY--VHGSTELLGLQID-----AAINSGNSGGPAFNDK-----G--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQ 316 (578)
Q Consensus 251 ~~~~--~~~~~~~~~i~~d-----a~i~~G~SGGPlvn~~-----G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~ 316 (578)
+... ........+|+.. ...|.|+|||||+..+ | .++||++....-......+...-+...+.+++
T Consensus 277 C~~~~~~~~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~~~~~~~~~~lvGIvS~G~~C~~~~~p~vyt~V~~y~~WI~ 356 (372)
T 1z8g_A 277 CNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIF 356 (372)
T ss_dssp HTSTTTTTTCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEEEEEBSSSSCTTCCEEEEEGGGGHHHHH
T ss_pred hCcchhcCCcCCCCeEeeecCCCCCcCCCCCCccceEeccCcCCCCCEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHH
Confidence 3211 1111112345553 2578999999999643 3 69999987543222233456677777777776
Q ss_pred HHHH
Q 008087 317 DYEK 320 (578)
Q Consensus 317 ~l~~ 320 (578)
+..+
T Consensus 357 ~~i~ 360 (372)
T 1z8g_A 357 QAIK 360 (372)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
No 120
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Probab=99.26 E-value=1.2e-11 Score=121.74 Aligned_cols=171 Identities=13% Similarity=0.117 Sum_probs=103.3
Q ss_pred eEEEEEEEcCCEEEecccccCCCceEEEEEcCCC-cEE--EE--EE-----EEEcC-------C--CCEEEEEEeeC-CC
Q 008087 149 SSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGSD-TKY--LA--TV-----LAIGT-------E--CDIAMLTVEDD-EF 208 (578)
Q Consensus 149 ~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~g-~~~--~a--~v-----v~~d~-------~--~DlAlLkv~~~-~~ 208 (578)
..|+|.+|++.||||+|||+.+...+.|.+.... ... .. +. +..++ . +|||||+++.+ .+
T Consensus 26 ~~CgGtLIs~~~VLTAAhC~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~v~~ 105 (240)
T 1fon_A 26 HTCGGSLIAPDWVVTAGHCISTSRTYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQL 105 (240)
T ss_dssp EEECCEEEETTEEEECGGGCCTTSCEEEEEEEEETTEEEEEEEEEEECTTSEEECTTCCTTCGGGCCCCEEEECSSCCCC
T ss_pred eEEEEEEeeCCEEEECHHHCCCCCceEEEeeeeeccccCCCceeEeeeeeEEEECCCCcCCCccCCCCEEEEEecCcccc
Confidence 5799999999999999999988777777763111 111 01 11 22332 3 89999999976 34
Q ss_pred CCCeeeEEcCCCC---CCCCcEEEEeecCCCC-------cceEEEeEEeceeeeee-cCC-ceeeeEEEEe---cCCCCC
Q 008087 209 WEGVLPVEFGELP---ALQDAVTVVGYPIGGD-------TISVTSGVVSRIEILSY-VHG-STELLGLQID---AAINSG 273 (578)
Q Consensus 209 ~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~-------~~sv~~G~Is~~~~~~~-~~~-~~~~~~i~~d---a~i~~G 273 (578)
...+.|+.|.... ..++.+++.||..... ...+...+++...+... ..+ .....+++.. ...|.|
T Consensus 106 ~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~C~G 185 (240)
T 1fon_A 106 GDKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVKKTMVCAGGDTRSGCNG 185 (240)
T ss_dssp TTSCCCCBCCCTTCCCCTTCCCEEEECTTCCCSSSCCSBCEEEECCEECHHHHTSTTTTGGGCCTTEEEECCSSSCSTTS
T ss_pred CCcccccCCCCcccCCCCCCeEEEEEEeEcCCCCCCChhheEEEEeeeCHHHhccceecCCccccceEeecCCCCcccCC
Confidence 4567888886532 3478899999864321 11222333333222211 001 1111245543 357899
Q ss_pred CccceEEcc--CC--eEEEEEeccc--cccccCCceeeecchhHHHHHHHHH
Q 008087 274 NSGGPAFND--KG--KCVGIAFQSL--KHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 274 ~SGGPlvn~--~G--~vVGI~~~~~--~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
+|||||+.. +| .++||++... .-......+...-+...+.++++..
T Consensus 186 DsGgPL~~~~~~~~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~~ 237 (240)
T 1fon_A 186 DSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETI 237 (240)
T ss_dssp CTTCEEEEECSSSCEEEEEEEEECCTTCSSBTTBCEEEEEGGGSHHHHHHHH
T ss_pred CCCCeEEeEcCCCCEEEEEEEEEcCCCCCCCCCCCcEEEEhHHHHHHHHHHH
Confidence 999999964 56 8999998743 1111123455677777777776654
No 121
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}
Probab=99.24 E-value=4.8e-11 Score=120.60 Aligned_cols=183 Identities=16% Similarity=0.093 Sum_probs=113.1
Q ss_pred CCCccccCCC---cceEEEEEEEcCCEEEecccccCCCceEEEEEcCC-----CcEEEEEEEEEcC-------CCCEEEE
Q 008087 137 FSLPWQRKRQ---YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGS-----DTKYLATVLAIGT-------ECDIAML 201 (578)
Q Consensus 137 ~~~p~~~~~~---~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~-----g~~~~a~vv~~d~-------~~DlAlL 201 (578)
..+||+.... ....|+|.+|++.||||+|||+.+...+.|++... ...+..+-+..++ .+|||||
T Consensus 62 ~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~V~~G~~~~~~~~~~~~v~~i~~Hp~y~~~~~~nDIALl 141 (283)
T 3f1s_B 62 QDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLHRNITVKTYFNRTSQDPLMIKITHVHVHMRYDADAGENDLSLL 141 (283)
T ss_dssp -CCTTEEEEECTTSCEEEEEEEEETTEEEECHHHHTSCSSCEEEECTTC-CCCCEEEEEEEEEECTTCBTTTTBTCCEEE
T ss_pred cccCCEEEEEecCCCeeeccEEecCCEEEEcHHhcCccCceEEEEeeeeCCCCcEEEEeEEEEECCCCCCCCCCCCEEEE
Confidence 3566665432 34579999999999999999998877888888421 2334444455554 4699999
Q ss_pred EEeeC-CCCCCeeeEEcCCCC------CCCCcEEEEeecCCCC-----cceEEEeEEeceeeeeecCCceeeeEEEE--e
Q 008087 202 TVEDD-EFWEGVLPVEFGELP------ALQDAVTVVGYPIGGD-----TISVTSGVVSRIEILSYVHGSTELLGLQI--D 267 (578)
Q Consensus 202 kv~~~-~~~~~~~~l~l~~~~------~~g~~V~~iG~p~g~~-----~~sv~~G~Is~~~~~~~~~~~~~~~~i~~--d 267 (578)
+++.+ .+...+.|+.|.... ..+..+++.||..... ...+...+++...+...........+|.. .
T Consensus 142 ~L~~pv~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~L~~~~v~~~~~~~C~~~~~~~~~~~~~Ca~~~ 221 (283)
T 3f1s_B 142 ELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNGTDLGNSLTTRPVTLVEGEECGQVLNVTVTTRTYCERSS 221 (283)
T ss_dssp EESSCCCTTTTCCCCBCCCHHHHHHTTTTTSCEEEEECBCC-------CEEEEEEEECHHHHHHHHTSCCCTTEEEEECS
T ss_pred EeCCcccCCCCEEeEECCCCccccccccCCCEEEEEECCCCCCCCCceeeEEEEeEeCHHHHhhhhcCCCCCCeEcccCC
Confidence 99976 345568888887532 3578899999864211 11233334433222211111111123443 2
Q ss_pred cCCCCCCccceEEcc-CCe--EEEEEeccccccccCCceeeecchhHHHHHHHHHH
Q 008087 268 AAINSGNSGGPAFND-KGK--CVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 268 a~i~~G~SGGPlvn~-~G~--vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
.....|+|||||+.. +|+ ++||++... .......+...-+...+.++++..+
T Consensus 222 ~~~~~gDSGgPlv~~~~~~~~l~GIvS~g~-c~~~~~p~vyt~V~~y~~WI~~~~~ 276 (283)
T 3f1s_B 222 VAAMHWMDGSVVTREHRGSWFLTGVLGSQP-VGGQAHMVLVTKVSRYSLWFKQIMN 276 (283)
T ss_dssp SCGGGBCTTCEEEEECSSCEEEEEEECCCS-GGGCSSEEEEEEGGGGHHHHHHHHT
T ss_pred CCCCCCCCCCcEEEEECCEEEEEEEEEeCC-CCCCCcceEEEEhHHhHHHHHHHhh
Confidence 234578999999964 555 999997632 1112234566777777788777654
No 122
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A
Probab=99.22 E-value=6.8e-11 Score=125.53 Aligned_cols=193 Identities=16% Similarity=0.171 Sum_probs=120.9
Q ss_pred EEEeeeeCCCCCCccccCCCcceEEEEEEEcCCEEEecccccCC----CceEEEEEcCC------CcEEEEEEEEEcC--
Q 008087 127 KVFCVHTEPNFSLPWQRKRQYSSSSSGFAIGGRRVLTNAHSVEH----YTQVKLKKRGS------DTKYLATVLAIGT-- 194 (578)
Q Consensus 127 ~I~~~~~~~~~~~p~~~~~~~~~~GsGfvI~~g~ILT~aHvV~~----~~~i~V~~~~~------g~~~~a~vv~~d~-- 194 (578)
+|..........+||+........|+|.+|++.||||+|||+.+ ...+.|++... ...+..+-+..++
T Consensus 161 rIvgG~~a~~~~~Pw~v~l~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~V~~G~~~~~~~~~~~~~v~~i~~Hp~y 240 (403)
T 1zjk_A 161 QIYGGQKAKPGDFPWQVLILGGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAVFIHEGY 240 (403)
T ss_dssp CCSSCEECCTTSSTTEEEEEESCCEEEEEETTTEEEECHHHHGGGTTCSTTEEEEESCSBTTCSCCEEEEEEEEEECTTC
T ss_pred cccCCcCCCCCCcCCEeEeccCCceEEEEecCCEEEEcHHhCCCCCCCcceEEEEccccccCCCCceEEeEEEEEECCCC
Confidence 45555556667889988765556799999999999999999964 35677887321 1233344444443
Q ss_pred ------CCCEEEEEEeeC-CCCCCeeeEEcCCCC-----CCCCcEEEEeecCCCC------cceEEEeEEeceeeeeecC
Q 008087 195 ------ECDIAMLTVEDD-EFWEGVLPVEFGELP-----ALQDAVTVVGYPIGGD------TISVTSGVVSRIEILSYVH 256 (578)
Q Consensus 195 ------~~DlAlLkv~~~-~~~~~~~~l~l~~~~-----~~g~~V~~iG~p~g~~------~~sv~~G~Is~~~~~~~~~ 256 (578)
.+|||||+++.+ .+...+.|+.|.... ..++.+++.||..... ...+..-+++...+.....
T Consensus 241 ~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L~~~~v~v~~~~~C~~~~~ 320 (403)
T 1zjk_A 241 THDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYE 320 (403)
T ss_dssp CTTSCCTTCCEEEEESSCCCCBTTBCCCBCCCGGGGGGSSTTCEEEEEESCTTSSSCCCSBCEEEEEEEECHHHHHHHTT
T ss_pred CCCCCCcccEEEEEeCCcCcCCCceecccCCCcccccccCCCCeEEEEcCCcCCCCccCcccEEEEEeEeCHHHHhhhhh
Confidence 469999999986 445578888887532 3578899999865321 1123334444332221111
Q ss_pred C------ceeeeEEEEe-----cCCCCCCccceEEcc---CC--eEEEEEecc-ccccccCCceeeecchhHHHHHHHHH
Q 008087 257 G------STELLGLQID-----AAINSGNSGGPAFND---KG--KCVGIAFQS-LKHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 257 ~------~~~~~~i~~d-----a~i~~G~SGGPlvn~---~G--~vVGI~~~~-~~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
. .....+|++. ...+.|+|||||+.. +| .++||++.. ..-......+...-+...+.++++..
T Consensus 321 ~~~~~~~~i~~~~~Cag~~~~~~~~C~GDSGGPL~~~~~~~~~~~l~GIvS~g~~~C~~~~~p~vyt~V~~y~~WI~~~i 400 (403)
T 1zjk_A 321 KPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 400 (403)
T ss_dssp SSSCCSSCSCTTEEEECCSSCCTTSCSCSTTCEEEEEETTTTEEEEEEEEEEECSCC--CCCCEEEEEGGGGHHHHHHHH
T ss_pred ccccccCcCCCCeEeeccCCCCCCCCcCCCCccEEEEECCCCcEEEEEEEEECCCCCCCCCCCeEEEEHHHHHHHHHHHH
Confidence 0 1112345552 357899999999864 34 599999874 22111123466677777777776654
No 123
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Probab=99.20 E-value=9.4e-11 Score=124.24 Aligned_cols=191 Identities=17% Similarity=0.194 Sum_probs=117.6
Q ss_pred EEEeeeeCCCCCCccccCCCcceEEEEEEEcCCEEEecccccCCC-------ceEEEEEcCCC-------cEEEEEEEEE
Q 008087 127 KVFCVHTEPNFSLPWQRKRQYSSSSSGFAIGGRRVLTNAHSVEHY-------TQVKLKKRGSD-------TKYLATVLAI 192 (578)
Q Consensus 127 ~I~~~~~~~~~~~p~~~~~~~~~~GsGfvI~~g~ILT~aHvV~~~-------~~i~V~~~~~g-------~~~~a~vv~~ 192 (578)
+|..........+||+........|+|.+|++.||||+|||+... ..+.|.+.... ..+..+-+..
T Consensus 157 rIvgG~~a~~~~~Pw~v~l~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~ 236 (399)
T 1gpz_A 157 QIIGGQKAKMGNFPWQVFTNIHGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSV 236 (399)
T ss_dssp CCCSCEECCTTSSTTEEEEESSSEEEEEEETTTEEEECGGGTSCTTC-----CCCEEEESCSBHHHHHHTCCCCEEEEEE
T ss_pred EEECCEECCCCCCCCEEEECCCCCeEEEEeCCCEEEeChhcccccccccCCcceEEEEeccccccccccccccceEEEEE
Confidence 566666677778999987655568999999999999999999743 24567763211 1122333333
Q ss_pred cC----------CCCEEEEEEeeC-CCCCCeeeEEcCCCC---CCCCcEEEEeecCCCC-----cceEEEeEEeceeeee
Q 008087 193 GT----------ECDIAMLTVEDD-EFWEGVLPVEFGELP---ALQDAVTVVGYPIGGD-----TISVTSGVVSRIEILS 253 (578)
Q Consensus 193 d~----------~~DlAlLkv~~~-~~~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~-----~~sv~~G~Is~~~~~~ 253 (578)
++ .+|||||+++.+ .|...+.|+.|.... ..|..+++.||..... ...+..-+++...+..
T Consensus 237 Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~L~~~~~~i~~~~~C~~ 316 (399)
T 1gpz_A 237 HPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACEN 316 (399)
T ss_dssp CSSCCSSSSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECC-----CCSBCEEEEEEEECHHHHHC
T ss_pred CCCCCcCCCCCCCCcEEEEEECCcCcCCCceeeeecCCCccccCCCCEEEEEccCCCCCccCccceEEEEEEcCHHHhhh
Confidence 33 359999999976 445568888887543 3578889999864321 1233444444333221
Q ss_pred ecCC-----ceeeeEEEEe-----cCCCCCCccceEEcc---CC--eEEEEEeccccccccCCceeeecchhHHHHHHHH
Q 008087 254 YVHG-----STELLGLQID-----AAINSGNSGGPAFND---KG--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDY 318 (578)
Q Consensus 254 ~~~~-----~~~~~~i~~d-----a~i~~G~SGGPlvn~---~G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l 318 (578)
.... .....+|+.. ...+.|+|||||+.. +| .++||++.+..- ..+.+...-+...+.++++.
T Consensus 317 ~~~~~~~~~~~~~~~~Cag~~~~~~d~C~GDSGGPl~~~~~~~~~~~l~GivS~g~~C--~~~~~vyt~V~~y~~WI~~~ 394 (399)
T 1gpz_A 317 WLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGC--SRGYGFYTKVLNYVDWIKKE 394 (399)
T ss_dssp -----------CCSEEEEECGGGGGGGGCSCSSCEEEEEETTTTEEEEEEEECCCTTT--TTTEEEEEEGGGGHHHHHHH
T ss_pred hhhcccccCcCCCCeEecccCCCCCccCCCCCchHeEEEECCCCeEEEEEEEEeCCCc--CCCCeEEEEhHHhHHHHHHH
Confidence 1100 0111345542 357899999999853 23 589999875431 22356667777777777665
Q ss_pred H
Q 008087 319 E 319 (578)
Q Consensus 319 ~ 319 (578)
.
T Consensus 395 ~ 395 (399)
T 1gpz_A 395 M 395 (399)
T ss_dssp T
T ss_pred h
Confidence 4
No 124
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia}
Probab=99.19 E-value=1.8e-10 Score=121.81 Aligned_cols=195 Identities=15% Similarity=0.130 Sum_probs=119.7
Q ss_pred EEEee-eeCCCCCCccccCCC----------cceEEEEEEEcCCEEEecccccCCC----ceEEEEEcCC----------
Q 008087 127 KVFCV-HTEPNFSLPWQRKRQ----------YSSSSSGFAIGGRRVLTNAHSVEHY----TQVKLKKRGS---------- 181 (578)
Q Consensus 127 ~I~~~-~~~~~~~~p~~~~~~----------~~~~GsGfvI~~g~ILT~aHvV~~~----~~i~V~~~~~---------- 181 (578)
+|... .......+||+.... ....|+|.+|++.||||+|||+.+. ..+.|++...
T Consensus 129 rIvgG~~~a~~~e~PW~v~l~~~~~~~~~~~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~~~V~~G~~~~~~~~~~~~ 208 (394)
T 2b9l_A 129 KITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNSYQSNLDAIKIRAGEWDTLTEKERLP 208 (394)
T ss_dssp EEESCSSBCCTTSSTTEEEEEECC------CCSEEEEEEEEETTEEEECHHHHGGGTTCGGGEEEEESCCBTTCCCSSSC
T ss_pred eeeCCccccCCCCCCcEEEEeeccccccccccceEeeEEEEeCCEEEeccceecCCCCCcccEEEEeceeeccCCcCCCc
Confidence 56655 455566788876432 2357999999999999999999753 4578887321
Q ss_pred CcEEEEEEEEEcC-------CCCEEEEEEeeC-CCCCCeeeEEcCCCC--CCCCcEEEEeecCCCC---------cceEE
Q 008087 182 DTKYLATVLAIGT-------ECDIAMLTVEDD-EFWEGVLPVEFGELP--ALQDAVTVVGYPIGGD---------TISVT 242 (578)
Q Consensus 182 g~~~~a~vv~~d~-------~~DlAlLkv~~~-~~~~~~~~l~l~~~~--~~g~~V~~iG~p~g~~---------~~sv~ 242 (578)
...+..+-+..++ .+|||||+++.+ .+...+.|+.|.... ..+..+++.||..... ...+.
T Consensus 209 ~~~~~V~~ii~Hp~y~~~~~~nDIALL~L~~pv~~~~~v~PicLp~~~~~~~~~~~~v~GWG~t~~~~~~~~s~~L~~~~ 288 (394)
T 2b9l_A 209 YQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICLPQQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQ 288 (394)
T ss_dssp CEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCBCCTTCCCCBCCCTTCCCCCSCEEEEECCTTTTTCTTSSCCBCEEEE
T ss_pred cEEEEEEEEEECCCCCCCccccceEEEEecCccccCCceeeeEcCCcccCccCCEEEEEeccCccCCCCCcccccceEEE
Confidence 1233444444554 369999999976 344568888887533 2367899999864211 12233
Q ss_pred EeEEeceeeeee-cC---C---ceeeeEEEEe----cCCCCCCccceEEcc----CC--eEEEEEeccccccccCCceee
Q 008087 243 SGVVSRIEILSY-VH---G---STELLGLQID----AAINSGNSGGPAFND----KG--KCVGIAFQSLKHEDVENIGYV 305 (578)
Q Consensus 243 ~G~Is~~~~~~~-~~---~---~~~~~~i~~d----a~i~~G~SGGPlvn~----~G--~vVGI~~~~~~~~~~~~~~~a 305 (578)
.-+++...+... .. + .....+|+.. ...|.|+|||||+.. +| .++||++.+..-.....-+..
T Consensus 289 v~iv~~~~C~~~~~~~~~~~~~~i~~~~iCAg~~~g~d~C~GDSGGPLv~~~~~~~~~~~lvGIvS~G~~C~~~~~PgVY 368 (394)
T 2b9l_A 289 LPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQGKDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVY 368 (394)
T ss_dssp ECEECHHHHHHHHHTTTTCTTCCCCTTEEEECCBSSCSCCSSCTTCEEEEEETTEEEEEEEEEEESCTTCCCBSSSCEEE
T ss_pred EEEECHHHHHHHHhhcccccceecCCCEEEeeCCCCCcCCCCCcchhhEEEEcCCCCeEEEEEEEEECCCCCCCCCCeEE
Confidence 444443332211 00 0 0111345542 357899999999963 23 689999875432122234566
Q ss_pred ecchhHHHHHHHHHHc
Q 008087 306 IPTPVIMHFIQDYEKN 321 (578)
Q Consensus 306 iPi~~i~~~l~~l~~~ 321 (578)
.-+...+.++++..+.
T Consensus 369 T~V~~y~~WI~~~i~~ 384 (394)
T 2b9l_A 369 ANVAHFRNWIDQEMQA 384 (394)
T ss_dssp EEGGGGHHHHHHHHHH
T ss_pred EEHHHhHHHHHHHHHh
Confidence 7777777777766543
No 125
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=99.19 E-value=2.1e-11 Score=104.40 Aligned_cols=101 Identities=14% Similarity=0.194 Sum_probs=80.7
Q ss_pred chhHHHHHHHHHHcCceeccccCCcccccccChhhhhhhccccCCCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCC
Q 008087 308 TPVIMHFIQDYEKNGAYTGFPLLGVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIAN 386 (578)
Q Consensus 308 i~~i~~~l~~l~~~g~v~~~~~lGi~~~~~~~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~ 386 (578)
.+.+.++.+++.+++... ++++|+..... . + ...|++|..+.|.|||++ ||++||+|++|||++|.+
T Consensus 4 ~~~~~~~~~~l~~~~~~~-~~~~g~~~~~~-~-------~---~~~G~~V~~~~pas~A~~aGl~~GDvI~~ing~~v~~ 71 (105)
T 2i4s_A 4 EDKVDAIREAIARNPQEI-FQYVRLSQVKR-D-------D---KVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTD 71 (105)
T ss_dssp HHHHHHHHHHHHHSGGGH-HHHEEEEEEEE-T-------T---EEEEEEEEECSCTHHHHHHTCCTTCEEEEETTEETTS
T ss_pred hHHHHHHHHHHHHCHHHH-HhhceeEEEec-C-------C---cEEEEEEecCCCCCHHHHcCCCCCCEEEEECCEECCC
Confidence 356778889999998887 88888875422 0 0 013677777888888899 999999999999999999
Q ss_pred CCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEEEEEe
Q 008087 387 DGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNITL 430 (578)
Q Consensus 387 ~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v~l 430 (578)
|.+ +..++.....|+.+.|+|.|+|+.+++.+++
T Consensus 72 ~~d----------~~~~~~~~~~g~~v~l~v~R~g~~~~~~v~l 105 (105)
T 2i4s_A 72 PNV----------MNTLFQSMNEMTEMSLTVERDGQQHDVYIQF 105 (105)
T ss_dssp TTH----------HHHHHHHHTTCSEEEEEEEETTEEEEEEEEC
T ss_pred HHH----------HHHHHHhcCCCCeEEEEEEECCEEEEEEEeC
Confidence 988 5566766667899999999999988887764
No 126
>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}
Probab=99.19 E-value=3.5e-10 Score=113.43 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=100.7
Q ss_pred eEEEEEEEcCCEEEecccccCCC---ceEEEEEcC--------CCcEEEEEEEEEcC---------CCCEEEEEEeeCC-
Q 008087 149 SSSSGFAIGGRRVLTNAHSVEHY---TQVKLKKRG--------SDTKYLATVLAIGT---------ECDIAMLTVEDDE- 207 (578)
Q Consensus 149 ~~GsGfvI~~g~ILT~aHvV~~~---~~i~V~~~~--------~g~~~~a~vv~~d~---------~~DlAlLkv~~~~- 207 (578)
..|+|.+|++.||||+|||+.+. ..+.|.+.. .+..+..+-+..++ ..|||||+++...
T Consensus 52 ~~CgGsLIs~~~VLTAAHCv~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~Diall~L~~~~~ 131 (276)
T 2vnt_A 52 YVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEG 131 (276)
T ss_dssp EEEEEEEEETTEEEECGGGTTTCCCGGGEEEEESCCBSSSCCTTCEEEEEEEEEECTTCEECSSCEESCCEEEEEECTTS
T ss_pred eEEEEEEeeCCEEEECcccccCCCCCccEEEEeeeeeccCCCCceEEEEEEEEEEccccccccccccchhhhhhhhcccc
Confidence 47999999999999999999753 335555521 12234444444443 3699999998542
Q ss_pred ----CCCCeeeEEcCCC---CCCCCcEEEEeecCCCCc--------ceEEEeEEeceeeeeecCC--ceeeeEEEE----
Q 008087 208 ----FWEGVLPVEFGEL---PALQDAVTVVGYPIGGDT--------ISVTSGVVSRIEILSYVHG--STELLGLQI---- 266 (578)
Q Consensus 208 ----~~~~~~~l~l~~~---~~~g~~V~~iG~p~g~~~--------~sv~~G~Is~~~~~~~~~~--~~~~~~i~~---- 266 (578)
+...+.++.|... ...|..+.+.|+...... ..+..-+++...+...... ......+..
T Consensus 132 ~~~~~~~~v~picL~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~~~~ 211 (276)
T 2vnt_A 132 RCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQ 211 (276)
T ss_dssp CCCCCCSSCCCCBCCCSSCCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEECHHHHTSTTTTGGGSCTTEEEEECTT
T ss_pred ccccCcccccccccccccccccccceEEEEEeeccccCCCCcchhheeeeeeEecHHHhhhhhccCcccCccceeeccCC
Confidence 3345777777642 345788888887643211 1223333433322211110 001112222
Q ss_pred -ecCCCCCCccceEEcc-CC--eEEEEEeccccccccCCceeeecchhHHHHHHHHHH
Q 008087 267 -DAAINSGNSGGPAFND-KG--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 267 -da~i~~G~SGGPlvn~-~G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
....|.|+|||||+.. +| .++||++.+..-.....-+...-+...+.++++..+
T Consensus 212 ~~~~~C~GDSGGPLv~~~~~~~~lvGIvS~G~~C~~~~~P~vyt~V~~y~~WI~~~~~ 269 (276)
T 2vnt_A 212 WKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTK 269 (276)
T ss_dssp SCCCCCTTCTTCEEEEEETTEEEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHHS
T ss_pred CCCCCCCCCCCCeEEEeeCCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhh
Confidence 1357899999999954 34 499999875432122223556677777777777654
No 127
>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}
Probab=99.18 E-value=1.1e-10 Score=121.35 Aligned_cols=193 Identities=16% Similarity=0.170 Sum_probs=118.6
Q ss_pred EEEEeeeeCCCCCCccccCCC--cceEEEEEEEcCCEEEecccccCCCc-----------eEEEEEcCCCcEEEEEEEEE
Q 008087 126 VKVFCVHTEPNFSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHYT-----------QVKLKKRGSDTKYLATVLAI 192 (578)
Q Consensus 126 V~I~~~~~~~~~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~~-----------~i~V~~~~~g~~~~a~vv~~ 192 (578)
-+|..........+||+.... ....|.|.+|++.||||+|||+.... ...+.. ...+.+..+-+..
T Consensus 101 ~RIvGG~~a~~g~~Pw~v~l~~~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~V~~i~~ 179 (347)
T 4f4o_C 101 QRIMGGSLDAKGSFPWQAKMISHHNLTSGATLINEQWLLTTAKNLRLGHKNDTKAKDIAPTLRLYV-GKKQEVEIEKVIF 179 (347)
T ss_dssp --CCSCCBCCSCCCTTCEEEECTTCCEEECCBCSSSEEEECHHHHTTTSCTTCCHHHHGGGCEEEE-TTTEEECEEEEEE
T ss_pred CeEECCEECCCCCCCcEEEEEeCCCEEEEEEEEcCCEEEeCcccccCCCCCcceEEeeeeeeeecC-CCeEEEEEEEEEE
Confidence 466666667777888987543 34579999999999999999996421 133333 2445555555566
Q ss_pred cCC---CCEEEEEEeeC-CCCCCeeeEEcCCC--CCCCCcEEEEeecCCCC------cceEEEeEEeceeeeeecC----
Q 008087 193 GTE---CDIAMLTVEDD-EFWEGVLPVEFGEL--PALQDAVTVVGYPIGGD------TISVTSGVVSRIEILSYVH---- 256 (578)
Q Consensus 193 d~~---~DlAlLkv~~~-~~~~~~~~l~l~~~--~~~g~~V~~iG~p~g~~------~~sv~~G~Is~~~~~~~~~---- 256 (578)
++. +|||||+++.+ .|...+.|+.|... ...|..+++.|+..... ...+...+++...+.....
T Consensus 180 HP~y~~nDIALlkL~~~v~~~~~v~PicLp~~~~~~~g~~~~v~GWG~~~~~~~s~~L~~~~v~iv~~~~C~~~~~~~~~ 259 (347)
T 4f4o_C 180 HPDNSTVDIGLIKLKQKVPVNERVMPICLPSKDYVNVGLVGYVSGWGRNANLNFTEHLKYVMLPVADQEKCVQYYEGSTV 259 (347)
T ss_dssp CSCTTTCCCEEEEESSCCCCSSSCCCCBCCSSCCCCTTCEEEEEECSBCTTSSBCSSCEEEEEEEECHHHHHHHHSSCSS
T ss_pred CcCCCCCCEEEEEECCCccCCCceeeeecCccccCCCCcEEEEeccccCCCCCCCccceEEEEEEeCHHHHHHHhccccc
Confidence 664 69999999976 45567888888653 34578888888764321 1234444554432211100
Q ss_pred -------------CceeeeEEEEe-----cCCCCCCccceEEcc---CC--eEEEEEeccccccccCCceeeecchhHHH
Q 008087 257 -------------GSTELLGLQID-----AAINSGNSGGPAFND---KG--KCVGIAFQSLKHEDVENIGYVIPTPVIMH 313 (578)
Q Consensus 257 -------------~~~~~~~i~~d-----a~i~~G~SGGPlvn~---~G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~ 313 (578)
......+|+.. ...|.|+|||||+-. +| .++||++.+..- +....+...-+...+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~iCAG~~~~~~d~C~GDSGGPLv~~~~~~~~~~lvGIvS~G~~C-~~~~pgVYTrVs~y~~ 338 (347)
T 4f4o_C 260 PEKKTPKSPVGVQPILNEHTFCAGLSKYQEDTCYGDAGSAFAVHDKDDDTWYAAGILSFDKSC-RTAEYGVYVRVTSILD 338 (347)
T ss_dssp GGGCCCCCSSSSCCCCSTTEEEECCCTTCCCCCTTCTTCEEEEEETTTTEEEEEEEEEECCCT-TTSSCEEEEEHHHHHH
T ss_pred cccccccccccccccccCCeEEecCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEEEeCCCC-CCCCCeEEEEHHHHHH
Confidence 00111245542 246889999999842 34 499999874432 1223455666777777
Q ss_pred HHHHHHH
Q 008087 314 FIQDYEK 320 (578)
Q Consensus 314 ~l~~l~~ 320 (578)
++++.++
T Consensus 339 WI~~~i~ 345 (347)
T 4f4o_C 339 WIQTTIA 345 (347)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 7776543
No 128
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica}
Probab=99.17 E-value=2.3e-10 Score=111.16 Aligned_cols=165 Identities=14% Similarity=0.042 Sum_probs=91.3
Q ss_pred ceEEEEEEEc---CCEEEecccccCCC------ceEEEEEcCC-C----cEEEEEEEEEc--------CCCCEEEEEEee
Q 008087 148 SSSSSGFAIG---GRRVLTNAHSVEHY------TQVKLKKRGS-D----TKYLATVLAIG--------TECDIAMLTVED 205 (578)
Q Consensus 148 ~~~GsGfvI~---~g~ILT~aHvV~~~------~~i~V~~~~~-g----~~~~a~vv~~d--------~~~DlAlLkv~~ 205 (578)
...|+|.+|+ +.||||+|||+.+. ..+.|..... . ..+..+-+..+ ..+|||||+++.
T Consensus 20 ~~~CgGslI~s~s~~~VLTAAHC~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~v~~~~~hp~y~~~~~~~~DiAll~L~~ 99 (218)
T 3cp7_A 20 DFVCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAPAYDYGESEHGVWAAEELVTSAEWANRGDFEHDYAFAVLET 99 (218)
T ss_dssp EEEEEEEEBCCTTSCEEEECGGGTBCCTTCBBCEEEEEEETCSSSCCTTCCEEEEEEEECHHHHHHCCGGGCCEEEEECC
T ss_pred CeEEEEEEEecCCCCEEEEChHhcCcCCCCeeecCEEEECcccCCCCCccEEEEEEEEECcccccCCCCcCCEEEEEEeC
Confidence 3579999998 99999999999653 3456665221 1 13344333332 357999999998
Q ss_pred C---CCCCCee-eEEcCCCCCCCCcEEEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCccceEEc
Q 008087 206 D---EFWEGVL-PVEFGELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFN 281 (578)
Q Consensus 206 ~---~~~~~~~-~l~l~~~~~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGPlvn 281 (578)
+ .+...+. ++.|......|..+.+.||+........ .........+...... ..+.+-|+.+.|+|||||+.
T Consensus 100 ~~~~~~~~~v~~~~~l~~~~~~g~~~~v~GwG~~~~~~~~---~l~~C~~~~~~~~~~~-~~~~~~Ca~~~GDSGGPlv~ 175 (218)
T 3cp7_A 100 KGGTTVQQQVGTASPIAFNQPRGQYYSAYGYPAAAPFNGQ---ELHSCHGTATNDPMGS-STQGIPCNMTGGSSGGPWFL 175 (218)
T ss_dssp BTTBCHHHHHSCCBCBCCSCCSSCEEEEEECCCSTTCCSS---SCEEEEEECEECTTSS-SCEEEECCCCTTCTTCEEEE
T ss_pred CCCcChhHhcCcccceeecCCCCCEEEEEeCCCCCCCCCc---eeeEeeeeEEcCCCCC-ceEEecCCCCCCCcCCeeEE
Confidence 6 2222344 5555543346889999999864211000 0000000001000000 01122233568999999997
Q ss_pred c---CCeEEEEEeccccccccCCceeeec-chhHHHHHHHH
Q 008087 282 D---KGKCVGIAFQSLKHEDVENIGYVIP-TPVIMHFIQDY 318 (578)
Q Consensus 282 ~---~G~vVGI~~~~~~~~~~~~~~~aiP-i~~i~~~l~~l 318 (578)
. .++++||++.... ......|.-. -+.++.+++..
T Consensus 176 ~~~g~~~lvGIvS~G~g--c~~~~~~~p~~~~~~~~l~~~a 214 (218)
T 3cp7_A 176 GNGTGGAQNSTNSYGYT--FLPNVMFGPYFGSGAQQNYNYA 214 (218)
T ss_dssp SSSSSSCEEEECCEEET--TEEEEEEECCCCHHHHHHHHHH
T ss_pred ccCCCeEEEEEEccccC--CCCCcEEcCcCCHHHHHHHHHH
Confidence 5 3789999987543 1222333322 25566666554
No 129
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Probab=99.17 E-value=5.7e-11 Score=127.03 Aligned_cols=193 Identities=17% Similarity=0.111 Sum_probs=117.8
Q ss_pred EEEeeeeCCCCCCccccCCC----cceEEEEEEEcCCEEEecccccC--------CCceEEEEEcCC---------CcEE
Q 008087 127 KVFCVHTEPNFSLPWQRKRQ----YSSSSSGFAIGGRRVLTNAHSVE--------HYTQVKLKKRGS---------DTKY 185 (578)
Q Consensus 127 ~I~~~~~~~~~~~p~~~~~~----~~~~GsGfvI~~g~ILT~aHvV~--------~~~~i~V~~~~~---------g~~~ 185 (578)
+|..........+||+.... ....|+|.+|++.||||+|||+. ....+.|++... .+.+
T Consensus 165 RIvgG~~a~~g~~Pw~v~l~~~~~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~~~~~~~V~lG~~~~~~~~~~~~~~~ 244 (424)
T 3nxp_A 165 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKIS 244 (424)
T ss_dssp CCCCCEECCTTSCTTEEEEEETTTTEEEEEEEESSSSEEEECHHHHEEGGGTEECCGGGEEEEESCCBSSSCCTTTCEEE
T ss_pred eeECCEECCCCCCCCEEEEeecCCCCccceeEEEcCCEEEEhHHhcCccccccccCcccEEEEeCcccccccCCCceeEE
Confidence 56666667777889987653 23579999999999999999984 234577877321 1122
Q ss_pred EEEEEEEcC--------CCCEEEEEEeeC-CCCCCeeeEEcCCCC------CCCCcEEEEeecCC-------------CC
Q 008087 186 LATVLAIGT--------ECDIAMLTVEDD-EFWEGVLPVEFGELP------ALQDAVTVVGYPIG-------------GD 237 (578)
Q Consensus 186 ~a~vv~~d~--------~~DlAlLkv~~~-~~~~~~~~l~l~~~~------~~g~~V~~iG~p~g-------------~~ 237 (578)
..+-+..++ .+|||||+++.+ .+...+.|+.|.... ..|..+.+.||... ..
T Consensus 245 ~V~~ii~Hp~y~~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~g~~~~v~GWG~t~~~~~~~~~~~~~~~ 324 (424)
T 3nxp_A 245 MLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 324 (424)
T ss_dssp CEEEEEECTTCBTTTTSBTCCEEEEESSCCCCCSSCCCCBCCCHHHHHHHHHHCSEEEEEESSHHHHHHHHC----CCSB
T ss_pred EEEEEEeCCCCCCCCCCcCCeEEEEecCccccCCcccccCCCCcccccccccCCCeEEEEecCCCCccCccccCCCCCcc
Confidence 233333433 469999999976 345567888886532 24788999998631 01
Q ss_pred cceEEEeEEeceeeeeecCCceeeeEEEEe--------cCCCCCCccceEEcc---CC--eEEEEEeccccccccCCcee
Q 008087 238 TISVTSGVVSRIEILSYVHGSTELLGLQID--------AAINSGNSGGPAFND---KG--KCVGIAFQSLKHEDVENIGY 304 (578)
Q Consensus 238 ~~sv~~G~Is~~~~~~~~~~~~~~~~i~~d--------a~i~~G~SGGPlvn~---~G--~vVGI~~~~~~~~~~~~~~~ 304 (578)
...+...+++...+...........+|+.. ...|.|+|||||+.. +| .++||++.+..-......+.
T Consensus 325 L~~~~v~ii~~~~C~~~~~~~i~~~~iCAg~~~~~~~~~d~C~GDSGGPLv~~~~~~~~~~l~GIvS~G~~C~~~~~pgV 404 (424)
T 3nxp_A 325 LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGF 404 (424)
T ss_dssp CEEEEEEBCCHHHHHHTCSSCCCTTEEEESCCCBTTBCCCTTCSCTTCEEEEECTTTCCEEEEEEECCSSCTTTCCSCEE
T ss_pred ceEEEeeEEcHHHhhhhccCcCCCCeEecccCCCCCCCCccCCCcCCCceEEEECCCCcEEEEEEEEeCCCCCCCCCCEE
Confidence 112333344332222111111112345552 267899999999964 34 69999987543222223456
Q ss_pred eecchhHHHHHHHHH
Q 008087 305 VIPTPVIMHFIQDYE 319 (578)
Q Consensus 305 aiPi~~i~~~l~~l~ 319 (578)
..-+...+.++++..
T Consensus 405 yT~Vs~y~~WI~~~i 419 (424)
T 3nxp_A 405 YTHVFRLKKWIQKVI 419 (424)
T ss_dssp EEECTTCHHHHHHHH
T ss_pred EEEHHHHHHHHHHHH
Confidence 677776666666543
No 130
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.17 E-value=2.1e-10 Score=130.41 Aligned_cols=168 Identities=12% Similarity=0.055 Sum_probs=102.3
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEEEEE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNIT 429 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v~ 429 (578)
..|++|..|.++|+|++ | |++||+|++|||++|.++.... +..++. ..|+.+.|+|.|+|+.....+.
T Consensus 183 ~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~--------~~~~l~--~~~~~v~l~V~R~g~~~~~~~~ 252 (721)
T 2xkx_A 183 DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHED--------AVAALK--NTYDVVYLKVAKPSNAYLSDSY 252 (721)
T ss_pred CCceEEEEeCCCCchhhcCCCCCCCEEEEECCeeCCCCCHHH--------HHHHHH--cCCCeEEEEEEeCCcccccCCC
Confidence 46999999999999999 9 9999999999999999975311 223332 3478999999999876533321
Q ss_pred ecccccccC-------CCC--------------CCC-----CCCceeecc-------EEEeehHHHHHHhchhhhhhhhh
Q 008087 430 LATHRRLIP-------SHN--------------KGR-----PPSYYIIAG-------FVFSRCLYLISVLSMERIMNMKL 476 (578)
Q Consensus 430 l~~~~~~~~-------~~~--------------~~~-----~p~~~~~~G-------l~~~~~p~~~~~~g~~~~~~~~~ 476 (578)
..+.... .+. ... .|......+ .....+..-...+|+
T Consensus 253 --~~p~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~l~~~~~~lG~-------- 322 (721)
T 2xkx_A 253 --APPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIHRGSTGLGF-------- 322 (721)
T ss_pred --CCCCcccCCCCCcccccCCcccccccccccCCCCCCcccCCcccccccccccccceEEEEEEECCCCccE--------
Confidence 0000000 000 000 000000000 000000000001110
Q ss_pred ccccccccccccCCCceEEEEe----ecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 477 RSSFWTSSCIQCHNCQMSSLLW----CLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 477 l~~~~~~~~~~~~~~~~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
.+....+..+++|.. ++|+++| |+.||+|++|||++|.+ ++++.++|++. ++.+.|.+.|+..
T Consensus 323 -------~i~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~-~~~v~L~v~r~~~ 392 (721)
T 2xkx_A 323 -------NIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA-GQTVTIIAQYKPE 392 (721)
T ss_pred -------EEeccCCCCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhc-CCeEEEEEEeCch
Confidence 001111234666665 4799999 99999999999999987 89999999875 6678899988754
No 131
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=99.16 E-value=2e-10 Score=117.85 Aligned_cols=182 Identities=16% Similarity=0.086 Sum_probs=111.5
Q ss_pred CCCCccccCCC---cceEEEEEEEcCCEEEecccccCCCceEEEEEcC-----CCcEEEEEEEEEcC-------CCCEEE
Q 008087 136 NFSLPWQRKRQ---YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRG-----SDTKYLATVLAIGT-------ECDIAM 200 (578)
Q Consensus 136 ~~~~p~~~~~~---~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~-----~g~~~~a~vv~~d~-------~~DlAl 200 (578)
...+||+.... ....|+|.+|++.||||+|||+.....+.|++.. ....+..+-+..++ .+||||
T Consensus 102 ~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~V~~G~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIAL 181 (317)
T 3h5c_B 102 LQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLHRNITVKTYFNRTSQDPLMIKITHVHVHMRYDADAGENDLSL 181 (317)
T ss_dssp TTCCTTEEEEECSSSCEEEEEEEEETTEEEECHHHHHSCSSCEEEECTTSCTTSCEEEEEEEEEECTTCBTTTTBSCCEE
T ss_pred cCCCCcEEEEeccCCceeeeeEEeeCCEEEEChHhcCcCCceEEEEeeecCCCCcEEEEeeEEEECCCCCCCCCCCCeEE
Confidence 34566665432 2457999999999999999999877778888732 12345555455554 469999
Q ss_pred EEEeeC-CCCCCeeeEEcCCC------CCCCCcEEEEeecCCCC-----cceEEEeEEeceeeeeecCCceeeeEEEE--
Q 008087 201 LTVEDD-EFWEGVLPVEFGEL------PALQDAVTVVGYPIGGD-----TISVTSGVVSRIEILSYVHGSTELLGLQI-- 266 (578)
Q Consensus 201 Lkv~~~-~~~~~~~~l~l~~~------~~~g~~V~~iG~p~g~~-----~~sv~~G~Is~~~~~~~~~~~~~~~~i~~-- 266 (578)
|+++.+ .+...+.|+.|... ...++.+++.||..... ...+...+++...............+|..
T Consensus 182 l~L~~pv~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~L~~~~v~~~~~~~C~~~~~~~~~~~~~Ca~~ 261 (317)
T 3h5c_B 182 LELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNGTDLGNSLTTRPVTLVEGEECGQVLNVTVTTRTYCERS 261 (317)
T ss_dssp EEESSCCCTTTSCCCCBCCCHHHHHHTTTTTSCEEEEBCCTTCCSSSCCCBCCEEEEECHHHHHHHHTCCCCTTEEEEEC
T ss_pred EEeCCcccCCCCccceeCCCcccccccccCCCeEEEEecCCCCCCCCccceEEEEEEECHHHHhhhhcCcCCCceeECCC
Confidence 999976 34456788888753 24588899999864211 12233444443322211111111123443
Q ss_pred ecCCCCCCccceEEcc-CCe--EEEEEeccccccccCCceeeecchhHHHHHHHH
Q 008087 267 DAAINSGNSGGPAFND-KGK--CVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDY 318 (578)
Q Consensus 267 da~i~~G~SGGPlvn~-~G~--vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l 318 (578)
......|+|||||+.. +|+ ++||++... .......+....+...+.++++.
T Consensus 262 ~~~~~~gDsGgPl~~~~~~~~~l~Gi~S~g~-~~~~~~p~vyt~V~~y~~WI~~~ 315 (317)
T 3h5c_B 262 SVAAMHWMDGSVVTREHRGSWFLTGVLGSQP-VGGQAHMVLVTKVSRYSLWFKQI 315 (317)
T ss_dssp SCCCCCCCTTCEEEEEETTEEEEEEEECCCC-SSCCTTEEEEEEGGGCHHHHHHH
T ss_pred CCCCcCCCCCCCEEEecCCEEEEEEEEEECC-CCCCCcceEEEEhHHhHHHHHHH
Confidence 3345679999999965 554 999997632 11122344566777777776654
No 132
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=99.16 E-value=7.1e-11 Score=100.14 Aligned_cols=73 Identities=23% Similarity=0.358 Sum_probs=65.2
Q ss_pred CCCcEEEEeCCCCcccCCCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEEEEEec
Q 008087 352 QKGVRIRRVDPTAPESEVLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNITLA 431 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v~l~ 431 (578)
..|++|..|.++|||++||++||+|++|||++|.+|.+ |...+.....|+.+.|+|.|+|+..++.+++.
T Consensus 6 ~~Gv~V~~V~~~spA~~GL~~GD~I~~Ing~~v~~~~d----------l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~ 75 (100)
T 3i18_A 6 YDGVYVMSVKDDVPAADVLHAGDLITEIDGNAFKSSQE----------FIDYIHSKKVGDTVKINYKHGDKNEQADIKLT 75 (100)
T ss_dssp CCCEEEEEECTTSGGGGTCCTTCEEEEETTBCCSSHHH----------HHHHHHTSCTTCEEEEEEEETTEEEEEEEECE
T ss_pred CCCEEEEEeCCCCchHHCCCCCCEEEEECCEECCCHHH----------HHHHHHhCCCCCEEEEEEEECCEEEEEEEEEe
Confidence 46999999999999988999999999999999999987 55677766678999999999999999999887
Q ss_pred ccc
Q 008087 432 THR 434 (578)
Q Consensus 432 ~~~ 434 (578)
.++
T Consensus 76 ~~~ 78 (100)
T 3i18_A 76 AID 78 (100)
T ss_dssp ECS
T ss_pred cCC
Confidence 664
No 133
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1
Probab=99.16 E-value=1.7e-10 Score=119.32 Aligned_cols=190 Identities=16% Similarity=0.092 Sum_probs=114.4
Q ss_pred EEEeeeeCCCCCCccccCCCcceEEEEEEEcCCEEEecccccCCCceEEEEEcCC------CcEEEE---EEEEEc----
Q 008087 127 KVFCVHTEPNFSLPWQRKRQYSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGS------DTKYLA---TVLAIG---- 193 (578)
Q Consensus 127 ~I~~~~~~~~~~~p~~~~~~~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~------g~~~~a---~vv~~d---- 193 (578)
+|..........+||+.... ...|+|.+|++.||||+|||+.+.....|.+... ...+.. +-+..+
T Consensus 82 rIvgG~~a~~~~~Pw~v~l~-~~~CgGsLIs~~~VLTAAHC~~~~~~~~v~~G~~~~~~~~~~~~~v~~v~~i~~Hp~y~ 160 (333)
T 1elv_A 82 RIIGGSDADIKNFPWQVFFD-NPWAGGALINEYWVLTAAHVVEGNREPTMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWK 160 (333)
T ss_dssp -CBTCEECCGGGSTTEEEEE-TTEEEEEEEETTEEEECHHHHTTCSSCCEECSCSBCC-------CEECEEEEEECTTSC
T ss_pred eeecCcccCCCCcCeEEEec-CCceeEEEecCCEEEehhheeCCCCCCeEEEeeeecccCccceeeeeccceEEECCCCc
Confidence 45555555666788988763 3379999999999999999998755445554211 111111 223333
Q ss_pred ----------CCCCEEEEEEeeC-CCCCCeeeEEcCCCC-----CCCCcEEEEeecCCCC------cceEEEeEEeceee
Q 008087 194 ----------TECDIAMLTVEDD-EFWEGVLPVEFGELP-----ALQDAVTVVGYPIGGD------TISVTSGVVSRIEI 251 (578)
Q Consensus 194 ----------~~~DlAlLkv~~~-~~~~~~~~l~l~~~~-----~~g~~V~~iG~p~g~~------~~sv~~G~Is~~~~ 251 (578)
..+|||||+++.+ .|...+.|+.|.... ..|+.+++.||..... ...+..-+++...+
T Consensus 161 ~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~~~~~g~~~~v~GWG~t~~~~~~~~L~~~~v~v~~~~~C 240 (333)
T 1elv_A 161 LLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRDRAVRLKAARLPVAPLRKC 240 (333)
T ss_dssp CCSSCTTCCCCTTCCEEEEESSCCCCBTTBCCCBCCCSSGGGCCCTTCEEEEEESCCCSSCSSCSBCEEEEEEEECHHHH
T ss_pred ccccccccCCCcceEEEEEeCCCCcCCCcccceecCCCcccccccCCcEEEEEECcCcCCCCcCceeEEEEEEEEcHHHh
Confidence 2469999999986 344568888887532 2378899999864321 11233334443222
Q ss_pred eeecCC---------ceeeeEEEEe----cCCCCCCccceEEcc---CC---eEEEEEeccccccccCCceeeecchhHH
Q 008087 252 LSYVHG---------STELLGLQID----AAINSGNSGGPAFND---KG---KCVGIAFQSLKHEDVENIGYVIPTPVIM 312 (578)
Q Consensus 252 ~~~~~~---------~~~~~~i~~d----a~i~~G~SGGPlvn~---~G---~vVGI~~~~~~~~~~~~~~~aiPi~~i~ 312 (578)
...... .....+|+.. ...|.|+|||||+.. +| .++||++.+..- . ..+...-+...+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~Cag~~~~~~~C~GDSGGPL~~~~~~~~~~~~l~GIvS~g~~C--~-~~~vyt~V~~y~ 317 (333)
T 1elv_A 241 KEVKVEKPTADAEAYVFTPNMICAGGEKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQC--G-TYGLYTRVKNYV 317 (333)
T ss_dssp HTC----------CCCCCTTEEEEECSTTCBCCTTCTTCEEEEECSSCTTCEEEEEEEEECSST--T-SEEEEEEGGGGH
T ss_pred hhhhhcccccccccccCCCCeECccCCCCCCcCcCcCCCceEEEECCCCcEEEEEEEEeeCCCC--C-CCcEEeEHHHHH
Confidence 211000 1111245542 357899999999964 23 599999875422 1 256677777777
Q ss_pred HHHHHHHH
Q 008087 313 HFIQDYEK 320 (578)
Q Consensus 313 ~~l~~l~~ 320 (578)
.++++..+
T Consensus 318 ~WI~~~~~ 325 (333)
T 1elv_A 318 DWIMKTMQ 325 (333)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 87776554
No 134
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster}
Probab=99.14 E-value=4.6e-10 Score=119.21 Aligned_cols=173 Identities=18% Similarity=0.187 Sum_probs=104.2
Q ss_pred ceEEEEEEEcCCEEEecccccCCC--ceEEEEEcCC--------------------CcEEEEEEEEEcC-------CCCE
Q 008087 148 SSSSSGFAIGGRRVLTNAHSVEHY--TQVKLKKRGS--------------------DTKYLATVLAIGT-------ECDI 198 (578)
Q Consensus 148 ~~~GsGfvI~~g~ILT~aHvV~~~--~~i~V~~~~~--------------------g~~~~a~vv~~d~-------~~Dl 198 (578)
...|+|.+|++.||||+|||+.+. ..+.|++... ...+..+-+..++ .+||
T Consensus 145 ~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~~c~~~~~~~~V~~ii~Hp~y~~~~~~nDI 224 (408)
T 2xxl_A 145 RFLCGGAMISERYILTAAHCVHGLQNDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDI 224 (408)
T ss_dssp EEEEEEEEEETTEEEECGGGTTTCTTTEEEEEESCSBTTCSCCEEEETTEEEECCCCEEEEEEEEEECTTCBTTTTBSCC
T ss_pred eEEEEEEEEECCEEEEcHHhcCCCCCceEEEEeeeeECCCccchhhcccccccCCceEEEeEEEEEeCCCCCccccccce
Confidence 357999999999999999999754 4677877321 0123333334443 3699
Q ss_pred EEEEEeeC-CCCCCeeeEEcCCC------CCCCCcEEEEeecCCCC------cceEEEeEEeceeeeeecCCceeeeEEE
Q 008087 199 AMLTVEDD-EFWEGVLPVEFGEL------PALQDAVTVVGYPIGGD------TISVTSGVVSRIEILSYVHGSTELLGLQ 265 (578)
Q Consensus 199 AlLkv~~~-~~~~~~~~l~l~~~------~~~g~~V~~iG~p~g~~------~~sv~~G~Is~~~~~~~~~~~~~~~~i~ 265 (578)
|||+++.+ .|...+.|+.|... ...+..+++.||..... ...+..-+++...+...........+|+
T Consensus 225 ALL~L~~~v~~~~~V~PICLp~~~~~~~~~~~~~~~~v~GWG~t~~~~~s~~L~~~~v~iv~~~~C~~~~~~~~~~~~iC 304 (408)
T 2xxl_A 225 ALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTTENGSSSDVLLQANVPLQPRSACSQAYRRAVPLSQLC 304 (408)
T ss_dssp EEEEESSCCCCBTTBCCCBCCCSHHHHHHTTTCSEEEEEECCCBTTBCSCSBCEEEEEEEECHHHHHHHHTSCCCTTEEE
T ss_pred EEEEECCccccccCccccCCCCcccccccccCCCEEEEEEeCcCCCCCCCchheEeeeeecCHHHHHHHhcccCCCceEe
Confidence 99999976 34556888888753 24578899999864321 1123333444332221111101113455
Q ss_pred Ee----cCCCCCCccceE------Ecc-CC--eEEEEEecc-ccccccCCceeeecchhHHHHHHHHHH
Q 008087 266 ID----AAINSGNSGGPA------FND-KG--KCVGIAFQS-LKHEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 266 ~d----a~i~~G~SGGPl------vn~-~G--~vVGI~~~~-~~~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
.. ...|.|+||||| +.. +| .++||++.+ ..-.....-+...-+...+.++++..+
T Consensus 305 Ag~~~g~d~C~GDSGGPL~~~~~~~~~~~~~~~l~GIvS~G~~~Cg~~~~PgVYTrVs~y~~WI~~~i~ 373 (408)
T 2xxl_A 305 VGGGDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDTMA 373 (408)
T ss_dssp ECCSCSSSGGGSCTTCEEEEEECCTTCSSCEEEEEEEEEECCCCTTSCCCCEEEEEGGGGHHHHHHHHH
T ss_pred ecCCCCCccCCCcccChhhcCccceEEECCEEEEEEEEEECCCCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence 43 356889999999 432 33 789999875 221111224556677777777766543
No 135
>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus}
Probab=99.13 E-value=3.2e-10 Score=106.98 Aligned_cols=150 Identities=15% Similarity=0.156 Sum_probs=97.9
Q ss_pred eEEEEEEEc---CCEEEecccccCCCc-eEEEEEcCCCcEEE-----EEEEEEcCCCCEEEEEEeeCCC-CCCeeeEEcC
Q 008087 149 SSSSGFAIG---GRRVLTNAHSVEHYT-QVKLKKRGSDTKYL-----ATVLAIGTECDIAMLTVEDDEF-WEGVLPVEFG 218 (578)
Q Consensus 149 ~~GsGfvI~---~g~ILT~aHvV~~~~-~i~V~~~~~g~~~~-----a~vv~~d~~~DlAlLkv~~~~~-~~~~~~l~l~ 218 (578)
..|+|++|. ..+||||+||+.+.. .+... .++..++ ..+-..|+..|||||++++... .-.+..+.|.
T Consensus 27 h~G~g~~V~~~G~~~LlTA~Hv~~~~~~~~~~~--k~g~~ip~~~~~~~~~~~d~~~D~all~vp~~~~s~lg~~~a~~~ 104 (191)
T 1zyo_A 27 TIGFGCRTKIDGEDCLLTAHHVWCNSMRPTGLA--KAGKQVSVEDWEISMSSSDKMLDFAIVRVPTHVWSKLGVKSTPLV 104 (191)
T ss_dssp EEEEEEEEEC--CEEEEECHHHHTSSSCCCEEE--ETTEEEECCSCEEEEEECCTTTCEEEEECCHHHHHHHTCCCCCBC
T ss_pred EEEEEEEEEECCCcEEEEChhhCcCCcceeeec--CCCCEEEcccceeeEccCCCCCcEEEEEcCCChhhhcCcceeEee
Confidence 479999994 469999999998752 22222 2444433 3444457789999999986420 0023444443
Q ss_pred CCCCCCCcEEEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCccceEEccCCeEEEEEeccccccc
Q 008087 219 ELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHED 298 (578)
Q Consensus 219 ~~~~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~ 298 (578)
. ...++.|.++|++..... ....|+.... ... .++++++...+|.||+|+||.+ .||||+.+.- .
T Consensus 105 ~-~~~~~~vt~yg~~~~~~~-~s~~g~~~~~------~~~---~~~~~~~~T~~G~SGsP~~ng~-~IVGvh~G~~---~ 169 (191)
T 1zyo_A 105 C-PSSKDVITCYGGSSSDCL-MSGVGSSSTS------EFT---WKLTHTCPTAAGWSGTPLYSSR-GVVGMHVGFE---E 169 (191)
T ss_dssp C-CCSCEEEEEEEESSTTSE-EEEEEEEEEC------SST---TEEEECCCCCTTCTTCEEECSS-CEEEEEEEEE---E
T ss_pred c-CCCCccEEEEeecCCCCE-eecccceeec------cCC---cEEEEEcCCCCCCCCCcEEcCC-eEEEEEeCcc---c
Confidence 2 224789999999865443 3334422111 101 2578888899999999999974 7889998832 3
Q ss_pred cCCceeeecchhHHHHH
Q 008087 299 VENIGYVIPTPVIMHFI 315 (578)
Q Consensus 299 ~~~~~~aiPi~~i~~~l 315 (578)
..+.+.++-+..++.+|
T Consensus 170 ~~~~N~a~n~~~~~~~~ 186 (191)
T 1zyo_A 170 IGKLNRGVNMFYVANYL 186 (191)
T ss_dssp TTTEEEEECHHHHHHHT
T ss_pred CCceeeeeehHHHhhhh
Confidence 45678888888887763
No 136
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=99.12 E-value=2.9e-11 Score=108.94 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=69.0
Q ss_pred cCceeccccCCcccccccChh-hhhhhccccCCCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCC--CCCCccccCc
Q 008087 321 NGAYTGFPLLGVEWQKMENPD-LRVAMSMKADQKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIAN--DGTVPFRHGE 396 (578)
Q Consensus 321 ~g~v~~~~~lGi~~~~~~~~~-~~~~lgl~~~~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~--~~~v~~~~~~ 396 (578)
.+++. +++||+.+....+.+ ..+.+++.....|++|..|.++|||++ ||++||+|++|||++|.+ +.+
T Consensus 32 ~~~~~-~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~------- 103 (139)
T 2vz5_A 32 LRQGE-NLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQ------- 103 (139)
T ss_dssp EEETT-EEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHH-------
T ss_pred cCCCC-cccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCCHHH-------
Confidence 44444 789999985421222 123455544467999999999999999 999999999999999996 333
Q ss_pred chhHHHHHhccCCCCEEEEEEEECCEEEEEEEEecc
Q 008087 397 RIGFSYLVSQKYTGDSAAVKVLRDSKILNFNITLAT 432 (578)
Q Consensus 397 ~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v~l~~ 432 (578)
+..++.. ..|+.+.|+|.|+|+..++.+.+..
T Consensus 104 ---~~~~l~~-~~g~~v~l~v~R~g~~~~v~~~~~~ 135 (139)
T 2vz5_A 104 ---ARKRLTK-RSEEVVRLLVTRQSLQKAVQQSMLS 135 (139)
T ss_dssp ---HHHHHCC-TTCSEEEEEEEECC-------CCCC
T ss_pred ---HHHHHHh-CCCCEEEEEEEECCEEEEEEEeece
Confidence 4455554 5789999999999998887776543
No 137
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Probab=99.10 E-value=7.1e-10 Score=126.49 Aligned_cols=194 Identities=19% Similarity=0.195 Sum_probs=121.4
Q ss_pred EEEeeeeCCCCCCccccCCC---cceEEEEEEEcCCEEEecccccCCC---ceEEEEEcCC--------CcEEEEEEEEE
Q 008087 127 KVFCVHTEPNFSLPWQRKRQ---YSSSSSGFAIGGRRVLTNAHSVEHY---TQVKLKKRGS--------DTKYLATVLAI 192 (578)
Q Consensus 127 ~I~~~~~~~~~~~p~~~~~~---~~~~GsGfvI~~g~ILT~aHvV~~~---~~i~V~~~~~--------g~~~~a~vv~~ 192 (578)
+|..........+||+.... ....|+|.||++.||||+|||+... ..+.|.+... .+.+...-+..
T Consensus 561 RIvGG~~a~~~~~PW~VsL~~~~~~~~CGGSLIs~~wVLTAAHCv~~~~~~~~~~V~lG~~~~~~~~~~~q~~~V~~i~~ 640 (791)
T 4dur_A 561 RVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFL 640 (791)
T ss_dssp TCTTCEECCTTSSTTEEEEECTTSCEEEEEEEEETTEEEECGGGGSSCCCGGGCEEEESCCBSSSCCTTCEEEEEEEEEE
T ss_pred ceECCEECCCCCCCeEEEEEecCCCeEEEEEEEeCCEEEECHHHcCCcCCCceEEEEeccccccCCCCccEEEEEEEEEC
Confidence 56666666777899998653 3457999999999999999999753 4567776321 12333333344
Q ss_pred cC-CCCEEEEEEeeC-CCCCCeeeEEcCCCC---CCCCcEEEEeecCCCC------cceEEEeEEeceeeeee--cCCce
Q 008087 193 GT-ECDIAMLTVEDD-EFWEGVLPVEFGELP---ALQDAVTVVGYPIGGD------TISVTSGVVSRIEILSY--VHGST 259 (578)
Q Consensus 193 d~-~~DlAlLkv~~~-~~~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~------~~sv~~G~Is~~~~~~~--~~~~~ 259 (578)
++ .+|||||+++.+ .+...+.++.|.... ..+..+++.|+..... ...+...+++...+... .....
T Consensus 641 hp~~nDIALLkL~~pv~~s~~V~PIcLP~~~~~~~~g~~~~vsGWG~t~~~~~s~~L~~~~v~ii~~~~C~~~~~~~~~i 720 (791)
T 4dur_A 641 EPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRV 720 (791)
T ss_dssp CTTCCSCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCCC---CCTTBCEEEEEEEECHHHHTSTTTTTTCC
T ss_pred CCCCCceEEEEecCccccCCceeeeeccCcccccCCCCEEEEEEeCCCCCCCCCCeeEEEEEEEeCHHHhhcccccCCCC
Confidence 43 579999999976 344567888886532 3478899999864311 12334444443333221 11111
Q ss_pred eeeEEEEe-----cCCCCCCccceEEccC-C--eEEEEEeccccccccCCceeeecchhHHHHHHHHHH
Q 008087 260 ELLGLQID-----AAINSGNSGGPAFNDK-G--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEK 320 (578)
Q Consensus 260 ~~~~i~~d-----a~i~~G~SGGPlvn~~-G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~~ 320 (578)
...+|... ...+.|+|||||+..+ | .++||++.+..-......+...-+...+.+|++.++
T Consensus 721 ~~~~iCAg~~~gg~daC~GDSGGPLv~~~~~~~~LvGIvS~G~gC~~~~~PgVYTrVs~y~dWI~~~i~ 789 (791)
T 4dur_A 721 QSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMR 789 (791)
T ss_dssp CTTEEEESCSSSCCCBCCSCTTCEEEEEETTEEEEEEECCTTTCCBBTTBCEEEEEGGGTHHHHHHHHH
T ss_pred CCCeEEeccCCCCCCCCCCCcccceEEEeCCeEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHHHH
Confidence 22344542 3567899999999643 3 599999875432222334667777777777776553
No 138
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=99.09 E-value=5.3e-11 Score=99.97 Aligned_cols=71 Identities=13% Similarity=0.182 Sum_probs=60.5
Q ss_pred cEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECC--EEEEEEEEec
Q 008087 355 VRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDS--KILNFNITLA 431 (578)
Q Consensus 355 v~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g--~~~~~~v~l~ 431 (578)
-+|..|.++|||++ ||++||+|++|||++|.+|.+ +...+.....++.+.++|.|+| ..+++++++.
T Consensus 4 p~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~d----------~~~~l~~~~~~~~v~l~v~R~g~~~~~~~~l~l~ 73 (95)
T 3id1_A 4 PVVGEIAANSIAAEAQIAPGTELKAVDGIETPDWDA----------VRLQLVDKIGDESTTITVAPFGSDQRRDVKLDLR 73 (95)
T ss_dssp CBEEEECTTSHHHHTTCCTTCEEEEETTEECSSHHH----------HHHHHHHTTTCSEEEEEEECTTCCCCEEEEEECT
T ss_pred CEEEeeCCCCHHHHcCCCCCCEEEEECCEECCCHHH----------HHHHHHHhcCCCcEEEEEEECCCCceEEEEEEcc
Confidence 35889999999999 999999999999999999988 4566665555689999999987 5788899998
Q ss_pred cccc
Q 008087 432 THRR 435 (578)
Q Consensus 432 ~~~~ 435 (578)
.+..
T Consensus 74 ~~~~ 77 (95)
T 3id1_A 74 HWAF 77 (95)
T ss_dssp TCCC
T ss_pred cccc
Confidence 8754
No 139
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=99.08 E-value=2.4e-11 Score=101.16 Aligned_cols=71 Identities=24% Similarity=0.334 Sum_probs=63.1
Q ss_pred CcEEEEeCCCCcccCCCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEEEEEeccc
Q 008087 354 GVRIRRVDPTAPESEVLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNITLATH 433 (578)
Q Consensus 354 Gv~V~~V~p~spA~~GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v~l~~~ 433 (578)
|++|..|.++|||++||++||+|++|||++|.++.+ |..++.....|+.+.|+|+|+|+.+++++++...
T Consensus 2 Gv~V~~V~~~spA~~GL~~GD~I~~InG~~v~~~~~----------l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~ 71 (91)
T 2kjp_A 2 GIYASSVVENMPAKGKIEVGDKIISADGKNYQSAEK----------LIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQF 71 (91)
T ss_dssp CSSCCCCCCSSCCSSCCCSSCEEEEETTBCCSSHHH----------HHHHHSSCCSSCEECEEEESSSCEECCCEECCCC
T ss_pred ceEEEEECCCChHHHcCCCCCEEEEECCEECCCHHH----------HHHHHHcCCCCCEEEEEEEECCEEEEEEEEEecc
Confidence 788999999999988999999999999999999876 5567776667999999999999999999988765
Q ss_pred c
Q 008087 434 R 434 (578)
Q Consensus 434 ~ 434 (578)
+
T Consensus 72 ~ 72 (91)
T 2kjp_A 72 P 72 (91)
T ss_dssp T
T ss_pred C
Confidence 4
No 140
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=99.08 E-value=9.9e-11 Score=98.08 Aligned_cols=73 Identities=29% Similarity=0.396 Sum_probs=64.5
Q ss_pred CCCcEEEEeCCCCcccCCCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEEEEEec
Q 008087 352 QKGVRIRRVDPTAPESEVLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNITLA 431 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v~l~ 431 (578)
..|++|..|.++|||++||++||+|++|||++|.++.+ |..++.....|+.+.|+|.|+|+.+++++++.
T Consensus 4 ~~Gv~V~~V~~~spA~~GL~~GD~Il~InG~~v~~~~~----------l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~ 73 (94)
T 2kl1_A 4 AKGVYVMSVLPNMPAAGRLEAGDRIAAIDGQPINTSEQ----------IVSYVREKQAGDRVRVTFIRDRKQHEAELVLK 73 (94)
T ss_dssp CCCEECCCCCTTSTTBTTBCTTCEEEEETTBCCCCHHH----------HHHHHHHSCTTCCEEEEEEETTEEEEEEECCC
T ss_pred CCcEEEEEECCCChHHhCCCCCCEEEEECCEECCCHHH----------HHHHHHhCCCCCEEEEEEEECCEEEEEEEEEe
Confidence 46899999999999988999999999999999999876 55677766689999999999999999998887
Q ss_pred ccc
Q 008087 432 THR 434 (578)
Q Consensus 432 ~~~ 434 (578)
..+
T Consensus 74 ~~~ 76 (94)
T 2kl1_A 74 PFP 76 (94)
T ss_dssp BCS
T ss_pred eCC
Confidence 654
No 141
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=99.02 E-value=1.7e-10 Score=95.11 Aligned_cols=68 Identities=16% Similarity=0.257 Sum_probs=58.3
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEEEEEe
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNITL 430 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v~l 430 (578)
.|++|..+.|+|||++ ||++||+|++|||++|.+|.+ +..++.....|+.+.|+|.|+|+..++.+++
T Consensus 19 ~G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~~~~d----------~~~~~~~~~~g~~v~l~v~R~g~~~~~~v~l 87 (87)
T 2i6v_A 19 LGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNV----------MNTLFQSMNEMTEMSLTVERDGQQHDVYIQF 87 (87)
T ss_dssp EEEEEEECSCHHHHHHTTCCTTCEEEEETTEETTCHHH----------HHHHHHTGGGCSEEEEEEEETTEEEEEEEEC
T ss_pred EEEEEEeCCCCCHHHHCCCCCCCEEEEECCEECCCHHH----------HHHHHHhcCCCCEEEEEEEECCEEEEEEEEC
Confidence 3788888888888899 999999999999999999987 5566766667899999999999988877754
No 142
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.00 E-value=9.5e-11 Score=102.26 Aligned_cols=94 Identities=15% Similarity=0.189 Sum_probs=70.4
Q ss_pred HHcCceeccccC----CcccccccChhhhhhhccccCCCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccc
Q 008087 319 EKNGAYTGFPLL----GVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFR 393 (578)
Q Consensus 319 ~~~g~v~~~~~l----Gi~~~~~~~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~ 393 (578)
.++|++. ++|+ |+.+... +..+...+.... ..|++|..|.++|||++ ||++||+|++|||++|.++.+
T Consensus 7 ~~~g~v~-r~~l~~~~~v~l~~~-~~~lG~~~~~~~-~~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~---- 79 (117)
T 1uit_A 7 GGERRKD-RPYVEEPRHVKVQKG-SEPLGISIVSGE-KGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATE---- 79 (117)
T ss_dssp CCCCCSC-CCCSCCCEEEEEECS-SCCCCEEEEECT-TSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCH----
T ss_pred cccCccc-cccCCCCEEEEEEeC-CCCccEEEEccC-CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCH----
Confidence 3578888 8999 8888765 322222221111 35899999999999999 999999999999999999876
Q ss_pred cCcchhHHHHHhccCCCCEEEEEEEECCEEEE
Q 008087 394 HGERIGFSYLVSQKYTGDSAAVKVLRDSKILN 425 (578)
Q Consensus 394 ~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~ 425 (578)
+...+.....++.+.|+|.|+++..+
T Consensus 80 ------~~~~~~~~~~g~~v~l~v~r~~~~~~ 105 (117)
T 1uit_A 80 ------QQARLIIGQQCDTITILAQYNPHVHQ 105 (117)
T ss_dssp ------HHHHHHTTSCCSEEEEEECCCSCCCC
T ss_pred ------HHHHHHHHcCCCeEEEEEEECCchhh
Confidence 33344344578999999999887543
No 143
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Probab=98.97 E-value=1.4e-09 Score=121.67 Aligned_cols=191 Identities=17% Similarity=0.177 Sum_probs=105.8
Q ss_pred EEEeeeeCCCCCCccccCCC-----cceEEEEEEEcCCEEEecccccCCC---ceEEEEEcC--------CCcEEEEEEE
Q 008087 127 KVFCVHTEPNFSLPWQRKRQ-----YSSSSSGFAIGGRRVLTNAHSVEHY---TQVKLKKRG--------SDTKYLATVL 190 (578)
Q Consensus 127 ~I~~~~~~~~~~~p~~~~~~-----~~~~GsGfvI~~g~ILT~aHvV~~~---~~i~V~~~~--------~g~~~~a~vv 190 (578)
+|..........+||+.... ....|+|.+|++.||||+|||+.+. ..+.|.+.. +...+..+-+
T Consensus 387 rIvgG~~a~~~~~Pw~v~L~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~V~~i 466 (625)
T 2f83_A 387 RIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEI 466 (625)
T ss_dssp CCCSSSSCCTTSSTTEEEEEECSSSSEEEEEEEECSSSEEEECGGGGSSCCCGGGEEEEESCSBGGGCCSSCCCEEEEEE
T ss_pred ceECCEECCCCCCCeEEEEEEecCCCcEEEEEEEECCCEEEEcHHhCCCCCCCceEEEEEEeccCCCCCCCceEEeEEEE
Confidence 34444444555677766442 2357999999999999999999753 346777631 1223444444
Q ss_pred EEcC-------CCCEEEEEEeeC-CCCCCeeeEEcCCCC---CCCCcEEEEeecCCCCc-------ceEEEeEEeceeee
Q 008087 191 AIGT-------ECDIAMLTVEDD-EFWEGVLPVEFGELP---ALQDAVTVVGYPIGGDT-------ISVTSGVVSRIEIL 252 (578)
Q Consensus 191 ~~d~-------~~DlAlLkv~~~-~~~~~~~~l~l~~~~---~~g~~V~~iG~p~g~~~-------~sv~~G~Is~~~~~ 252 (578)
..++ .+|||||+++.+ .+...+.|+.|.... ..+..+++.||...... ..+..-+++...+.
T Consensus 467 i~Hp~y~~~~~~nDIALlkL~~pv~~~~~v~PicLp~~~~~~~~~~~~~v~GWG~~~~~~~~s~~L~~~~v~i~~~~~C~ 546 (625)
T 2f83_A 467 IIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQ 546 (625)
T ss_dssp EECTTCCBTTTBCCCEEEEESSCCCCBTTBCCCBCCCGGGTTCCCCCEEECBCC------CCCSBCBCCEECCCCHHHHH
T ss_pred EECCccCcCCccccEEEEEECCcccCCCceeeeEcCCccCCccCCCEEEEEEecCCCCCCcCCcccEEEEEEEcCHHHHH
Confidence 5554 369999999976 344567888887532 35788899998642110 11222222222111
Q ss_pred e-ecCCceeeeEEEE-----ecCCCCCCccceEEcc-CC--eEEEEEeccccccccCCceeeecchhHHHHHHH
Q 008087 253 S-YVHGSTELLGLQI-----DAAINSGNSGGPAFND-KG--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQD 317 (578)
Q Consensus 253 ~-~~~~~~~~~~i~~-----da~i~~G~SGGPlvn~-~G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~ 317 (578)
. +........+|.. ....+.|+|||||+.. +| .++||++.+..-......+...-+...+.++++
T Consensus 547 ~~~~~~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~~~~~~lvGIvS~G~~C~~~~~P~vyT~V~~y~~WI~~ 620 (625)
T 2f83_A 547 KRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILE 620 (625)
T ss_dssp TTCTTSCCCTTBCCC----------CCCTTCEEEEEETTEEEEEEEEEECCC----CCCCEEEEGGGGHHHHHH
T ss_pred HHhccCCCCCCeEEeecCCCCCcCCCCCcccceEEEECCeEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHH
Confidence 1 1000001112222 2357899999999964 45 699999875421111223455666666666654
No 144
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.95 E-value=1.8e-09 Score=117.53 Aligned_cols=185 Identities=15% Similarity=0.181 Sum_probs=106.7
Q ss_pred CCCccccCCC------cceEEEEEEEcCCEEEecccccCCC---ceEEEEEcCCCcEEEEEEEEEcC-------------
Q 008087 137 FSLPWQRKRQ------YSSSSSGFAIGGRRVLTNAHSVEHY---TQVKLKKRGSDTKYLATVLAIGT------------- 194 (578)
Q Consensus 137 ~~~p~~~~~~------~~~~GsGfvI~~g~ILT~aHvV~~~---~~i~V~~~~~g~~~~a~vv~~d~------------- 194 (578)
..+||+.... ....|.|.+|++.||||+|||+... ..+.|.+....+.+..+-+..++
T Consensus 224 ~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~v~~i~~Hp~y~~~~~~~~~~~ 303 (497)
T 1rrk_A 224 HKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIP 303 (497)
T ss_dssp HHSTTEEEEEECC--CCCEEEEEEECSSSEEEECGGGCCTTCCGGGEEEEETTCSSCEEEEEEEECTTCCTTTTGGGTCS
T ss_pred cccCcEEEEEEEcCCCCCceeEEEEecCCEEEECHHhCCCCCCceEEEEEeCCccceeeeEEEEeCCCcccccccccccc
Confidence 3578876543 2457999999999999999999753 46888885444555555444443
Q ss_pred ---CCCEEEEEEeeC-CCCCCeeeEEcCCCC--------CCCCcEEEEeecC--------------CCCcceEEEeEEec
Q 008087 195 ---ECDIAMLTVEDD-EFWEGVLPVEFGELP--------ALQDAVTVVGYPI--------------GGDTISVTSGVVSR 248 (578)
Q Consensus 195 ---~~DlAlLkv~~~-~~~~~~~~l~l~~~~--------~~g~~V~~iG~p~--------------g~~~~sv~~G~Is~ 248 (578)
.+|||||+++.+ .+...+.|+.|.... ..|..+.+.|+.. ......+..-+++.
T Consensus 304 ~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~L~~~~v~i~~~ 383 (497)
T 1rrk_A 304 EFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNG 383 (497)
T ss_dssp SCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEESSSCEEEEEEEEECS
T ss_pred ccCCCcEEEEEECCCCcCCCCeeeeeCCCCCccccccccCCCCchhcccccccCCccccceeeccCCCcceeeeEEEecC
Confidence 359999999976 345568888887521 2243333333211 10111223333431
Q ss_pred ---eeeee-------ecC-----CceeeeEEEEe-------cCCCCCCccceEEcc-CC--eEEEEEecccc--cc----
Q 008087 249 ---IEILS-------YVH-----GSTELLGLQID-------AAINSGNSGGPAFND-KG--KCVGIAFQSLK--HE---- 297 (578)
Q Consensus 249 ---~~~~~-------~~~-----~~~~~~~i~~d-------a~i~~G~SGGPlvn~-~G--~vVGI~~~~~~--~~---- 297 (578)
..|.. +.. ......+|+.. ...|.|+|||||+.. +| .++||++.+.. -.
T Consensus 384 ~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~iCag~~~~~~~~~~C~GDSGGPL~~~~~~~~~l~GIvS~g~~~~C~~~~~ 463 (497)
T 1rrk_A 384 DKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKR 463 (497)
T ss_dssp TTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEETTEEEEEEEEEEESCCCC-----
T ss_pred cccchhhhhhhhcccccccccccccCCCCeEEeCCCCCCCCCcCCCCCCCCeeEEEeCCEEEEEEEEEecCCCCCCCccc
Confidence 11211 100 00112346653 257899999999965 34 49999987541 11
Q ss_pred --ccCCc--eeeecchhHHHHHHHHHHc
Q 008087 298 --DVENI--GYVIPTPVIMHFIQDYEKN 321 (578)
Q Consensus 298 --~~~~~--~~aiPi~~i~~~l~~l~~~ 321 (578)
+..++ +...-+...+.++++..+.
T Consensus 464 ~~~~P~~~r~vyt~V~~~~~WI~~~~~~ 491 (497)
T 1rrk_A 464 QKQVPAHARDFHINLFQVLPWLKEKLQD 491 (497)
T ss_dssp ---CCTTCEEEEEEGGGGHHHHHHHTTT
T ss_pred cCCCCCccceeeeeHHHHHHHHHHHhCc
Confidence 00111 2445577777787776544
No 145
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=98.92 E-value=3.6e-10 Score=93.62 Aligned_cols=61 Identities=15% Similarity=0.238 Sum_probs=51.0
Q ss_pred CCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEe--CCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 352 QKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDI--ANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V--~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
..|++|..|.++|||++ ||++||+|++|||++| .++.+ +..++.....|+.+.|+|.|+|+
T Consensus 27 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~----------~~~~l~~~~~g~~v~l~v~R~g~ 90 (90)
T 2eaq_A 27 IPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKE----------WEEAMAKAQETGHLVMDVRRYGK 90 (90)
T ss_dssp TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHH----------HHHHHHHHHHHTEEEEEEEEEC-
T ss_pred CCCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHH----------HHHHHHhcCCCCEEEEEEEeCCC
Confidence 35899999999999999 9999999999999999 66665 45566554468899999999874
No 146
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Probab=98.92 E-value=1.1e-08 Score=102.28 Aligned_cols=128 Identities=13% Similarity=0.172 Sum_probs=72.2
Q ss_pred eEEEEEEEcC------CEEEecccccCCC----ceEEEEEcC---C---------C--------cE-EEEEEEEEcCCCC
Q 008087 149 SSSSGFAIGG------RRVLTNAHSVEHY----TQVKLKKRG---S---------D--------TK-YLATVLAIGTECD 197 (578)
Q Consensus 149 ~~GsGfvI~~------g~ILT~aHvV~~~----~~i~V~~~~---~---------g--------~~-~~a~vv~~d~~~D 197 (578)
..|+|++|++ .||||||||+.+. ..+.|.+.. + + .. ....+++....+|
T Consensus 34 ~~CGGSLI~~~~~~~~~~VLTAAHCv~~~~~~~~~~~v~~~~~~~~c~~~~~~~~~~~~~~~~~~~~v~~~i~h~~~~nD 113 (268)
T 1arb_A 34 LACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNSTCRAPNTPASGANGDGSMSQTQSGSTVKATYATSD 113 (268)
T ss_dssp EEEEEEEBCCTTCCCCCEEEEEGGGSCCSHHHHHTCEEEESCCCSSCCCTTSGGGGSCCCCCCCCEEECEEEEEEETTTT
T ss_pred cEEeEEEEcCCCCCCCCEEEEcHHhCCCccCcceEEEEEeCCCCCccccccccccccccCCcceEEeccceEecCCCCCc
Confidence 5799999986 6999999999752 345666521 0 0 11 2234445567799
Q ss_pred EEEEEEeeCCCCCCeeeEEcCCCCCCCCcEEEEeec---------------CCCCcceEEEeEEeceeeeeecCCceeee
Q 008087 198 IAMLTVEDDEFWEGVLPVEFGELPALQDAVTVVGYP---------------IGGDTISVTSGVVSRIEILSYVHGSTELL 262 (578)
Q Consensus 198 lAlLkv~~~~~~~~~~~l~l~~~~~~g~~V~~iG~p---------------~g~~~~sv~~G~Is~~~~~~~~~~~~~~~ 262 (578)
|||||++.+.. .+..+++.||. .+... .+....+.... ..+ .......
T Consensus 114 IALLrL~~~v~--------------~~~~~~vsGWG~t~~~~~~~~~~~~~~~~l~-~i~~~~~~~~~-~~~-~~~~~~~ 176 (268)
T 1arb_A 114 FTLLELNNAAN--------------PAFNLFWAGWDRRDQNYPGAIAIHHPNVAEK-RISNSTSPTSF-VAW-GGGAGTT 176 (268)
T ss_dssp EEEEEESSCCC--------------GGGCCEEBCEECCSCCCSCEEEEECGGGCSC-EEEEECSCCEE-ECT-TSSSCSS
T ss_pred eEEEEecCCCC--------------CCCceEEeCcCccCCCCCcceeeccCCcccE-EEEeecccccc-ccc-cccccCC
Confidence 99999997521 11223333332 21111 12222111100 011 1111112
Q ss_pred EEEEe-----cCCCCCCccceEEccCCeEEEEEecc
Q 008087 263 GLQID-----AAINSGNSGGPAFNDKGKCVGIAFQS 293 (578)
Q Consensus 263 ~i~~d-----a~i~~G~SGGPlvn~~G~vVGI~~~~ 293 (578)
+|++. ...|.|+|||||++.+++++||++..
T Consensus 177 ~iCag~~~~~gdtC~gdsGgPl~~~~~~~~Gi~s~g 212 (268)
T 1arb_A 177 HLNVQWQPSGGVTEPGSSGSPIYSPEKRVLGQLHGG 212 (268)
T ss_dssp EEEEECCTTSCCCCTTCTTCEEECTTSCEEEEEEEC
T ss_pred eEEEeeecCCCCCccCcccCCcEeeCCEEEEEEeec
Confidence 44442 24789999999998789999999874
No 147
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=98.87 E-value=2.2e-09 Score=90.13 Aligned_cols=82 Identities=18% Similarity=0.325 Sum_probs=60.8
Q ss_pred cccCCcccccccChhhhhhhccccCCCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHh
Q 008087 327 FPLLGVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVS 405 (578)
Q Consensus 327 ~~~lGi~~~~~~~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~ 405 (578)
+++||+.+..-.... .......|++|..|.++|||++ ||++||+|++|||++|.++.++ .....
T Consensus 13 ~~glG~~i~~g~~~~-----~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~----------~~~~~ 77 (97)
T 2w4f_A 13 TGGLGISIAGGKGST-----PYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHH----------EAVEA 77 (97)
T ss_dssp TTBSSEEEEECTTSC-----CSBTTBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHH----------HHHHH
T ss_pred CCceeEEEECCccCC-----cccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHH----------HHHHH
Confidence 567888876421100 0111246999999999999999 9999999999999999998762 22333
Q ss_pred ccCCCCEEEEEEEECCEE
Q 008087 406 QKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 406 ~~~~g~~v~l~V~R~g~~ 423 (578)
....|+.+.|+|.|+|+.
T Consensus 78 ~~~~g~~v~l~v~R~g~~ 95 (97)
T 2w4f_A 78 LRGAGTAVQMRVWRERET 95 (97)
T ss_dssp HHTSCSEEEEEEECCSSC
T ss_pred HhCCCCeEEEEEEeCCcc
Confidence 334789999999999864
No 148
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=98.87 E-value=9.2e-09 Score=117.47 Aligned_cols=191 Identities=14% Similarity=0.173 Sum_probs=106.9
Q ss_pred eeCCCCCCccccCC------CcceEEEEEEEcCCEEEecccccCC---CceEEEEEcCCCcEEEEEEEEEcC--------
Q 008087 132 HTEPNFSLPWQRKR------QYSSSSSGFAIGGRRVLTNAHSVEH---YTQVKLKKRGSDTKYLATVLAIGT-------- 194 (578)
Q Consensus 132 ~~~~~~~~p~~~~~------~~~~~GsGfvI~~g~ILT~aHvV~~---~~~i~V~~~~~g~~~~a~vv~~d~-------- 194 (578)
.......+||+... .....|+|.+|++.||||+|||+.. ...+.|.+......+..+-+..++
T Consensus 461 ~~~~~~~~Pw~~~v~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~v~~i~~Hp~y~~~~~~ 540 (741)
T 3hrz_D 461 KGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNINGKK 540 (741)
T ss_dssp --CCTTTCTTEEEEEECCCC-----EEEEECSSSEEEECGGGCC-----CCEEEEETTCSCCEEEEEEEECTTCCTTTTG
T ss_pred CcccccCcCCeEEEEEEeCCCCCCEEEEEEecCCEEEEchhhccccCCcceEEEEeCCCceEEEEEEEEECCCCCccccc
Confidence 33445678994322 2345799999999999999999974 456888885455556655555554
Q ss_pred --------CCCEEEEEEeeC-CCCCCeeeEEcCCC--------CCCCCcEEEEeecCCCCc--------------ceEEE
Q 008087 195 --------ECDIAMLTVEDD-EFWEGVLPVEFGEL--------PALQDAVTVVGYPIGGDT--------------ISVTS 243 (578)
Q Consensus 195 --------~~DlAlLkv~~~-~~~~~~~~l~l~~~--------~~~g~~V~~iG~p~g~~~--------------~sv~~ 243 (578)
.+|||||+++.+ .+...+.|+.|... ...|..+.+.|+...... .....
T Consensus 541 ~~~~~~~~~nDIALlkL~~pv~~s~~v~picLp~~~~~~~~~~~~~~~~~~~~gwg~~~~~~~~~~~~~~~~~~L~~~~v 620 (741)
T 3hrz_D 541 EAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEV 620 (741)
T ss_dssp GGTCSCCCTTCCEEEEESSCCCCCSSCCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEESSSCEEEEEE
T ss_pred ccccCCccCCcEEEEEECCcCcCCCCccccccCCcccccchhccCCCCccccccccccccccccceecccccccccccee
Confidence 359999999876 34456788888632 123444444444321111 01112
Q ss_pred eEEe---ceeeee-------ec-----CCceeeeEEEEe-------cCCCCCCccceEEcc-CC--eEEEEEecccccc-
Q 008087 244 GVVS---RIEILS-------YV-----HGSTELLGLQID-------AAINSGNSGGPAFND-KG--KCVGIAFQSLKHE- 297 (578)
Q Consensus 244 G~Is---~~~~~~-------~~-----~~~~~~~~i~~d-------a~i~~G~SGGPlvn~-~G--~vVGI~~~~~~~~- 297 (578)
-+++ ...+.. +. .......+|++. ...|.|+|||||+.. +| .++||++.+....
T Consensus 621 ~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~i~~~~lCag~~~~~~~~~~C~GDSGGPL~~~~~~~~~lvGIvS~G~~~~C 700 (741)
T 3hrz_D 621 YIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVC 700 (741)
T ss_dssp EEECSTTHHHHHHGGGGSTTCTTCSSGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEETTEEEEEEEEEEESSCCC
T ss_pred EeecCcccchhhhhhhhccccccccccccccCCCeEecCCcCCCCCCCcCcCcccCceEEeeCCeEEEEEEEeecCCccc
Confidence 2222 000000 00 001112345552 347889999999965 33 4999998854111
Q ss_pred -c---cCCc-----eeeecchhHHHHHHHHHHcC
Q 008087 298 -D---VENI-----GYVIPTPVIMHFIQDYEKNG 322 (578)
Q Consensus 298 -~---~~~~-----~~aiPi~~i~~~l~~l~~~g 322 (578)
. .... ++..-+...+.++++..+..
T Consensus 701 ~~~~~~~~p~~~~~~vyt~V~~~~~WI~~~i~~~ 734 (741)
T 3hrz_D 701 KNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDE 734 (741)
T ss_dssp C------CCCTTCEEEEEEGGGSHHHHHHHTTTS
T ss_pred CCcccccCCCCCccceEEEhHHhHHHHHHHhcCC
Confidence 1 1122 56677888888888876543
No 149
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=98.85 E-value=1.2e-08 Score=112.97 Aligned_cols=191 Identities=17% Similarity=0.144 Sum_probs=94.0
Q ss_pred EEEeeeeCCCCCCccccCCC--cceEEEEEEEcCCEEEecccccCCC--ceEEEEEcC---------CCcEEEEEEEEEc
Q 008087 127 KVFCVHTEPNFSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHY--TQVKLKKRG---------SDTKYLATVLAIG 193 (578)
Q Consensus 127 ~I~~~~~~~~~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~--~~i~V~~~~---------~g~~~~a~vv~~d 193 (578)
+|..........+||+.... ....|+|.+|++.||||+|||+... ..+.|.+.. ....+..+-+..+
T Consensus 321 rIvgG~~a~~g~~Pw~v~l~~~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~V~~G~~~~~~~~~~~~~~~~V~~ii~H 400 (565)
T 2xrc_A 321 RIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCLRASKTHRYQIWTTVVDWIHPDLKRIVIEYVDRIIFH 400 (565)
T ss_dssp -----------CCTTBCEEEESSSCCCCCEEEETTEEEECHHHHTTCSSCCEEEEC-------------CEEEEEEEEEC
T ss_pred ceECCEECCCCCCCcEEEEecCCceeeeEEEEeCCEEEEChhhcccCCCcceEEEEEEeeccCCCCCccEEEEEEEEEeC
Confidence 56566666667889987653 2347999999999999999999753 345565421 1122333434454
Q ss_pred C-------CCCEEEEEEeeCCCC-----CCeeeEEcCCCC---CCCCcEEEEeecCCCCc------ceEEEeEEeceeee
Q 008087 194 T-------ECDIAMLTVEDDEFW-----EGVLPVEFGELP---ALQDAVTVVGYPIGGDT------ISVTSGVVSRIEIL 252 (578)
Q Consensus 194 ~-------~~DlAlLkv~~~~~~-----~~~~~l~l~~~~---~~g~~V~~iG~p~g~~~------~sv~~G~Is~~~~~ 252 (578)
+ .+|||||+++.+... ..+.|+.|.... ..++.+++.||...... ..+..-+++. ..
T Consensus 401 p~Y~~~~~~nDIALlkL~~~v~~~~~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~t~~~~~~~~L~~~~v~i~~~--C~ 478 (565)
T 2xrc_A 401 ENYNAGTYQNDIALIEMKKDGNKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREKDNERVFSLQWGEVKLISN--CS 478 (565)
T ss_dssp TTCCTTTCTTCCEEEEECCCSSSSCSCCTTCCCCBCCSCTTSSCTTCEEEEEC-------------CEEEEEECSC--TH
T ss_pred CCCCCCcccccceeeeeccccccccccccceeeeecCCcccccCCCCEEEEEeCccCCCCCccceeeEEeeeehHH--hH
Confidence 4 369999999976311 235677675432 34788999998643211 1112222221 11
Q ss_pred eecCCce-eeeEEEEe-----cCCCCCCccceEEcc--CC--eEEEEEeccccccccCCceeeecchhHHHHHHHHH
Q 008087 253 SYVHGST-ELLGLQID-----AAINSGNSGGPAFND--KG--KCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 253 ~~~~~~~-~~~~i~~d-----a~i~~G~SGGPlvn~--~G--~vVGI~~~~~~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
....... ...+|... ...+.|+|||||+.. +| .++||++.+..-......+...-+...+.+|++..
T Consensus 479 ~~~~~~~~~~~~iCAg~~~g~~d~C~GDSGGPLv~~~~~~~~~lvGIvS~G~~C~~~~~PgVYTrVs~y~~WI~~~i 555 (565)
T 2xrc_A 479 KFYGNRFYEKEMECAGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVSWGENCGKPEFPGVYTKVANYFDWISYHV 555 (565)
T ss_dssp HHHTTSCCTTTEEEEEEC----------CCCEEEEECTTCCEEEEEEECC------CCCCEEEEEGGGGHHHHHHHC
T ss_pred HhhccCcCCCceEEeCCCCCCCccCCCccccceEEEeCCCcEEEEEEEeeCCCCCCCCCCEEEEEHHHHHHHHHHHh
Confidence 1101111 11134432 357889999999954 34 48999987542111123455667777777776654
No 150
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=98.85 E-value=1.1e-09 Score=90.96 Aligned_cols=77 Identities=10% Similarity=0.213 Sum_probs=54.5
Q ss_pred ChhhhhhhccccCCCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeC--CCCCCccccCcchhHHHHHhccCCCCEEE
Q 008087 339 NPDLRVAMSMKADQKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIA--NDGTVPFRHGERIGFSYLVSQKYTGDSAA 414 (578)
Q Consensus 339 ~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~--~~~~v~~~~~~~~~~~~~~~~~~~g~~v~ 414 (578)
+++.++.||+... .|++|..|.++|||++ | |++||+|++|||+++. ++.+ +..++.. .++.+.
T Consensus 10 ~~~~~~~~g~~~~-~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~----------~~~~l~~--~~~~v~ 76 (92)
T 3cyy_A 10 KSAKNEEYGLRLA-SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTD----------AKTLIER--SKGKLK 76 (92)
T ss_dssp CSSTTSCCCEEEE-EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHH----------HHHHHHT--TTTEEE
T ss_pred eCCCCCCCCEEEe-CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHH----------HHHHHHc--CCCcEE
Confidence 4556667777642 5899999999999999 9 9999999999999999 6655 4455544 345899
Q ss_pred EEEEECCEEEEEEE
Q 008087 415 VKVLRDSKILNFNI 428 (578)
Q Consensus 415 l~V~R~g~~~~~~v 428 (578)
|+|.|+|+..++.+
T Consensus 77 l~v~r~g~~~~~~v 90 (92)
T 3cyy_A 77 MVVQRDERATLLNV 90 (92)
T ss_dssp EEEEC---------
T ss_pred EEEEeCCceeeeeC
Confidence 99999998766654
No 151
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=98.81 E-value=2.7e-09 Score=90.60 Aligned_cols=82 Identities=20% Similarity=0.222 Sum_probs=56.3
Q ss_pred cccCCcccccccChhhhhhhccccCCCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCC--CCCCccccCcchhHHH
Q 008087 327 FPLLGVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIAN--DGTVPFRHGERIGFSY 402 (578)
Q Consensus 327 ~~~lGi~~~~~~~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~--~~~v~~~~~~~~~~~~ 402 (578)
+++||+.+... .....+.+++.. ..|++|..|.++|||++ | |++||+|++|||++|.+ +.+ +..
T Consensus 15 ~~~lG~~~~~~-~~~~~~~~~~~~-~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~----------~~~ 82 (103)
T 2fcf_A 15 SKSLGISIVGG-RGMGSRLSNGEV-MRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQ----------AVE 82 (103)
T ss_dssp -CCCCEEEECC-CC--------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHH----------HHH
T ss_pred CCceeEEEEcc-CCCCcccccCCC-CCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHH----------HHH
Confidence 57899999876 444444445433 46899999999999999 9 99999999999999988 444 445
Q ss_pred HHhccCCCCEEEEEEEECCE
Q 008087 403 LVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 403 ~~~~~~~g~~v~l~V~R~g~ 422 (578)
++... ++.+.|+|.|.++
T Consensus 83 ~l~~~--~~~v~l~v~r~~~ 100 (103)
T 2fcf_A 83 AIRKA--GNPVVFMVQSIIS 100 (103)
T ss_dssp HHHTC--CSSEEEEEECCCC
T ss_pred HHHhC--CCcEEEEEEECCC
Confidence 55543 4589999998654
No 152
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=98.81 E-value=2.3e-09 Score=88.84 Aligned_cols=68 Identities=25% Similarity=0.368 Sum_probs=57.4
Q ss_pred CcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEEEEEecc
Q 008087 354 GVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNITLAT 432 (578)
Q Consensus 354 Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v~l~~ 432 (578)
.++|..|.++|||++ ||++||+|++|||+++.+|.+ +...+... .|+.+.++|.|+|+.+++.+++..
T Consensus 5 ~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~----------~~~~l~~~-~g~~v~l~v~R~g~~~~~~v~~~~ 73 (91)
T 2zpm_A 5 EPVLENVQPNSAASXAGLQAGDRIVXVDGQPLTQWVT----------FVMLVRDN-PGXSLALEIERQGSPLSLTLIPES 73 (91)
T ss_dssp -CBCSEECTTSHHHHTTCCTTCEEEEETTEECCCHHH----------HHHHHHHC-TTCCEEEEEEETTEEEEEEECCEE
T ss_pred CeEEEEECCCChHHhcCCCCCCEEEEECCeEcCCHHH----------HHHHHhcC-CCCeEEEEEEECCeEEEEEEEEee
Confidence 366889999999998 999999999999999999977 45566554 688999999999998888877643
No 153
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.81 E-value=5.5e-09 Score=89.87 Aligned_cols=83 Identities=19% Similarity=0.302 Sum_probs=60.1
Q ss_pred cccCCcccccccChhhhhhhccccCCCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHh
Q 008087 327 FPLLGVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVS 405 (578)
Q Consensus 327 ~~~lGi~~~~~~~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~ 405 (578)
+..||+.+..-... ..+.....|++|..|.++|||++ ||++||+|++|||++|.+..+. .....
T Consensus 25 ~~glG~~i~~g~~~-----~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~----------~~~~~ 89 (110)
T 1x5q_A 25 TGGLGISIAGGKGS-----TPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHH----------EAVEA 89 (110)
T ss_dssp SSSCSEEEEECTTS-----CCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHH----------HHHHH
T ss_pred CCeeeEEEEccccC-----CccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHH----------HHHHH
Confidence 45677777532110 01112356999999999999999 9999999999999999997652 22222
Q ss_pred ccCCCCEEEEEEEECCEEE
Q 008087 406 QKYTGDSAAVKVLRDSKIL 424 (578)
Q Consensus 406 ~~~~g~~v~l~V~R~g~~~ 424 (578)
....|+.+.|+|+|+|+.+
T Consensus 90 ~~~~g~~v~l~v~R~g~~~ 108 (110)
T 1x5q_A 90 LRGAGTAVQMRVWRESGPS 108 (110)
T ss_dssp HHSCCSEEEEEEEECSSCC
T ss_pred hhCCCCeEEEEEEECCccC
Confidence 2337899999999998753
No 154
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=6.6e-09 Score=87.80 Aligned_cols=75 Identities=15% Similarity=0.129 Sum_probs=59.2
Q ss_pred cccCCcccccccChhhhhhhccccCCCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHh
Q 008087 327 FPLLGVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVS 405 (578)
Q Consensus 327 ~~~lGi~~~~~~~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~ 405 (578)
.++||+.+... .. ...|++|..|.++|||++ ||++||+|++|||++|.++. + .+++.
T Consensus 21 ~~~lG~~~~~~-~~----------~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~----------~~~~~ 78 (100)
T 2eeh_A 21 AGRLGFSVRGG-SE----------HGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTT-M----------GSAVK 78 (100)
T ss_dssp SSSCSEEEECC-TT----------TTCCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCC-H----------HHHHH
T ss_pred CCCccEEEEcc-cc----------CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-H----------HHHHH
Confidence 57899998754 11 135899999999999999 99999999999999999874 1 23443
Q ss_pred ccCCCCEEEEEEEECCEE
Q 008087 406 QKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 406 ~~~~g~~v~l~V~R~g~~ 423 (578)
....++.+.|+|+|+|+.
T Consensus 79 ~~~~~~~v~l~v~R~g~~ 96 (100)
T 2eeh_A 79 VLTSSSRLHMMVRRMGSG 96 (100)
T ss_dssp HHHSCSSEEEEEEECSCC
T ss_pred hhcCCCEEEEEEEECCcC
Confidence 333478999999998864
No 155
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=98.81 E-value=8.9e-09 Score=87.52 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=60.5
Q ss_pred cccCCcccccccChhhhh-hhccccCCCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCC--CCccccCcchhHHH
Q 008087 327 FPLLGVEWQKMENPDLRV-AMSMKADQKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDG--TVPFRHGERIGFSY 402 (578)
Q Consensus 327 ~~~lGi~~~~~~~~~~~~-~lgl~~~~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~--~v~~~~~~~~~~~~ 402 (578)
+++||+.+..-.+.+.+. .++......|++|..|.++|||++ ||++||+|++|||+++.+.. + +..
T Consensus 18 ~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~----------~~~ 87 (104)
T 3sfj_A 18 NLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQ----------ARK 87 (104)
T ss_dssp EEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHH----------HHH
T ss_pred CCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHH----------HHH
Confidence 457999987221222221 233333467999999999999999 99999999999999998765 4 334
Q ss_pred HHhccCCCCEEEEEEEEC
Q 008087 403 LVSQKYTGDSAAVKVLRD 420 (578)
Q Consensus 403 ~~~~~~~g~~v~l~V~R~ 420 (578)
.+.. ..|+.+.|+|.|+
T Consensus 88 ~l~~-~~g~~v~l~v~R~ 104 (104)
T 3sfj_A 88 RLTK-RSEEVVRLLVTRQ 104 (104)
T ss_dssp HHTC-TTCSEEEEEEEEC
T ss_pred HHHh-CCCCEEEEEEEcC
Confidence 4443 4688999999884
No 156
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=98.80 E-value=2.1e-09 Score=86.80 Aligned_cols=77 Identities=10% Similarity=0.201 Sum_probs=58.7
Q ss_pred CcccccccChhhhhhhccccCCCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeC--CCCCCccccCcchhHHHHHhc
Q 008087 331 GVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIA--NDGTVPFRHGERIGFSYLVSQ 406 (578)
Q Consensus 331 Gi~~~~~~~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~--~~~~v~~~~~~~~~~~~~~~~ 406 (578)
|+++..+ +++..+.||+... .|++|..|.++|||++ | |++||+|++|||+++. ++.+ +..++..
T Consensus 1 G~~~~~~-~~~~~~~~g~~~~-~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~----------~~~~l~~ 68 (81)
T 2rcz_A 1 GSKVTLV-KSRKNEEYGLRLA-SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTD----------AKTLIER 68 (81)
T ss_dssp CEEEEEE-CCSTTCCCCEEEE-EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHH----------HHHHHHT
T ss_pred CeEEEEE-ECCCCCCCCEEEe-CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHH----------HHHHHHC
Confidence 4555666 6667777887642 5899999999999999 9 9999999999999999 6555 4455544
Q ss_pred cCCCCEEEEEEEECC
Q 008087 407 KYTGDSAAVKVLRDS 421 (578)
Q Consensus 407 ~~~g~~v~l~V~R~g 421 (578)
.++.+.|+|.|+|
T Consensus 69 --~~~~v~l~v~R~g 81 (81)
T 2rcz_A 69 --SKGKLKMVVQRDE 81 (81)
T ss_dssp --STTEEEEEEEC--
T ss_pred --CCCeEEEEEEeCC
Confidence 2358999998875
No 157
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=98.79 E-value=3.3e-09 Score=87.95 Aligned_cols=62 Identities=21% Similarity=0.243 Sum_probs=52.2
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEE
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKIL 424 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~ 424 (578)
.|++|..|.++|||++ ||++||+|++|||++|.++.... +..++.. .|+.+.|+|.|+|+.+
T Consensus 27 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~--------~~~~l~~--~g~~v~l~v~R~g~~~ 89 (91)
T 2pkt_A 27 QPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLE--------AQNRIKG--CTDNLTLTVARSEHES 89 (91)
T ss_dssp EEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHH--------HHHHHHT--CSSEEEEEEEEECCCC
T ss_pred CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH--------HHHHHHc--CCCeEEEEEEECCccc
Confidence 4899999999999999 99999999999999999988211 3445544 7899999999988754
No 158
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.76 E-value=6.7e-09 Score=113.39 Aligned_cols=182 Identities=14% Similarity=0.144 Sum_probs=100.5
Q ss_pred CCccccCCC--cceEEEEEEEcCCEEEecccccCCC---ceEEEEEcCC----CcEEEEEEEEEcC--------------
Q 008087 138 SLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHY---TQVKLKKRGS----DTKYLATVLAIGT-------------- 194 (578)
Q Consensus 138 ~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~---~~i~V~~~~~----g~~~~a~vv~~d~-------------- 194 (578)
.+||+.... ....|.|.+|++.||||+|||+.+. ..+.|.+... +..+..+-+..++
T Consensus 234 ~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~~~~ 313 (509)
T 2odp_A 234 RTPWHVTIKPKSQETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKSQWGKEFLIEKAVISPGFDVFAKKNQGILE 313 (509)
T ss_dssp HCTTEEEEEC----CEEEEECSSSEEEECGGGC--------CEEEECCTTCTTCEEECEEEEEECTTCCTTTTGGGTCCC
T ss_pred CCCcEEEEEeCCCcEEEEEEEcCCEEEEcHHHcCCCCCcceEEEEeCCcccCCCceeeeEEEEECCCCcccccccccccc
Confidence 578887543 2347999999999999999999753 4567777322 2344444444443
Q ss_pred --CCCEEEEEEeeC-CCCCCeeeEEcCCCC--------CCCCcEEEEeecCCCCc-----------ceEEEeEEe---ce
Q 008087 195 --ECDIAMLTVEDD-EFWEGVLPVEFGELP--------ALQDAVTVVGYPIGGDT-----------ISVTSGVVS---RI 249 (578)
Q Consensus 195 --~~DlAlLkv~~~-~~~~~~~~l~l~~~~--------~~g~~V~~iG~p~g~~~-----------~sv~~G~Is---~~ 249 (578)
.+|||||+++.+ .+...+.|+.|.... ..|..+.+.|+...... ..+...++. ..
T Consensus 314 ~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~g~~~~~~g~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 393 (509)
T 2odp_A 314 FYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWT 393 (509)
T ss_dssp CCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEECTTSCEEEEEEECTHHHH
T ss_pred ccCCCeEEEEECCcccCCCCcccccCCCCcccchhhccCCCCccccccccccccccceeeeecccCceeeEEEecCccHH
Confidence 369999999976 344568888887421 23555444443211110 012222221 11
Q ss_pred eeee--------ec-----CCceeeeEEEEe----cCCCCCCccceEEccC-C--eEEEEEecccccccc----------
Q 008087 250 EILS--------YV-----HGSTELLGLQID----AAINSGNSGGPAFNDK-G--KCVGIAFQSLKHEDV---------- 299 (578)
Q Consensus 250 ~~~~--------~~-----~~~~~~~~i~~d----a~i~~G~SGGPlvn~~-G--~vVGI~~~~~~~~~~---------- 299 (578)
.|.. +. .......+|+.. ...|.|+|||||+... | .++||++.+....-.
T Consensus 394 ~C~~~~~~~~~~~~~~~~~~~~~~~~~iCag~~~~~~~C~GDSGGPL~~~~~~~~~l~GIvS~G~~~~C~~~~~~~~~~~ 473 (509)
T 2odp_A 394 SCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQEDESPCKGESGGAVFLERRFRFFQVGLVSWGLYNPCLGSADKNSRKR 473 (509)
T ss_dssp HHHHGGGGCTTTCTTCSSGGGTSCTTEEEECCTTCCCCCGGGTTCEEEEEETTEEEEEEEEEEESCCTTC-----CCCCC
T ss_pred HHHHHhhcccccccccccccccccCCEEEeCCCCCCcccCCCccCceEEEECCeEEEEEEEEEcCCCCCCCccccccccc
Confidence 1211 10 001112356653 3578999999999753 3 599999875421110
Q ss_pred ---CCc----eeeecchhHHHHHHHHH
Q 008087 300 ---ENI----GYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 300 ---~~~----~~aiPi~~i~~~l~~l~ 319 (578)
.+. ++..-+...+.++++..
T Consensus 474 ~~~Pg~~y~~~vyt~V~~~~~WI~~~~ 500 (509)
T 2odp_A 474 APRSKVPPPRDFHINLFRMQPWLRQHL 500 (509)
T ss_dssp CCTTCSSCCCEEEEEGGGCHHHHHHHH
T ss_pred CcccCCCCCCceeeeHHHHhHHHHHHh
Confidence 111 34556777777777654
No 159
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.73 E-value=3.3e-09 Score=93.42 Aligned_cols=80 Identities=20% Similarity=0.302 Sum_probs=63.7
Q ss_pred cccCCcccccccChhhhhhhccccCCCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHH
Q 008087 327 FPLLGVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLV 404 (578)
Q Consensus 327 ~~~lGi~~~~~~~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~ 404 (578)
+.+||+.+... ... ....|++|..|.++|||++ | |++||+|++|||++|.++.+ +..++
T Consensus 31 ~~~lG~~~~~~-~~~--------~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~----------~~~~l 91 (124)
T 1wh1_A 31 QDKLGLTVCYR-TDD--------EDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREE----------AVALL 91 (124)
T ss_dssp TCCCCEEEECC-CCC--------SSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSHHH----------HHHHH
T ss_pred CCcccEEEEec-CCC--------CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCHHH----------HHHHH
Confidence 35689988866 221 1136999999999999999 9 99999999999999998776 55666
Q ss_pred hccCCCCEEEEEEEECCEEEEE
Q 008087 405 SQKYTGDSAAVKVLRDSKILNF 426 (578)
Q Consensus 405 ~~~~~g~~v~l~V~R~g~~~~~ 426 (578)
.. ..|+.+.|+|.|+|+.++.
T Consensus 92 ~~-~~g~~v~l~v~R~g~~~~~ 112 (124)
T 1wh1_A 92 TS-EENKNFSLLIARPELQLDE 112 (124)
T ss_dssp TC-SSCCSCCEEEEECSSCCCC
T ss_pred Hh-CCCCEEEEEEEECCEEeec
Confidence 55 4688999999999876433
No 160
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=98.73 E-value=5e-09 Score=86.90 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=46.4
Q ss_pred CCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeC--CCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEE
Q 008087 352 QKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIA--NDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKIL 424 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~--~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~ 424 (578)
..|++|..|.++|||++ ||++||+|++|||++|. ++.+ +..++... |+.+.|+|.|+++..
T Consensus 26 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~----------~~~~l~~~--g~~v~l~v~r~~~~~ 89 (91)
T 2vsp_A 26 LPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEK----------VVDRIQSS--GKNVTLLVCGKKAQD 89 (91)
T ss_dssp CSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHH----------HHHHHTTS--CSEEEEEEEC-----
T ss_pred CCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHH----------HHHHHHcC--CCEEEEEEEeCCccc
Confidence 35899999999999999 99999999999999998 5544 44555543 899999999987653
No 161
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=98.72 E-value=1e-08 Score=90.16 Aligned_cols=82 Identities=20% Similarity=0.222 Sum_probs=58.5
Q ss_pred cccCCcccccccChhhhhhhccccCCCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCC--CCCCccccCcchhHHH
Q 008087 327 FPLLGVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIAN--DGTVPFRHGERIGFSY 402 (578)
Q Consensus 327 ~~~lGi~~~~~~~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~--~~~v~~~~~~~~~~~~ 402 (578)
+++||+.+... .....+.+++.. ..|++|..|.++|||++ | |++||+|++|||++|.+ +.+ +..
T Consensus 35 ~~~lGi~v~~~-~~~~~~~~~~~~-~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~----------~~~ 102 (123)
T 2iwq_A 35 SKSLGISIVGG-RGMGSRLSNGEV-MRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQ----------AVE 102 (123)
T ss_dssp TSCCSEEEEEC-C---------CC-CCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHH----------HHH
T ss_pred CCCccEEEEec-cCccccccccCC-CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHH----------HHH
Confidence 57899998766 443334344433 46999999999999999 9 99999999999999988 444 345
Q ss_pred HHhccCCCCEEEEEEEECCE
Q 008087 403 LVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 403 ~~~~~~~g~~v~l~V~R~g~ 422 (578)
++... ++.+.|+|.|.+.
T Consensus 103 ~l~~~--~~~v~l~v~r~~~ 120 (123)
T 2iwq_A 103 AIRKA--GNPVVFMVQSIIS 120 (123)
T ss_dssp HHHHC--CSSEEEEEECCCC
T ss_pred HHHcC--CCeEEEEEEECCc
Confidence 55443 5589999998653
No 162
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=98.71 E-value=1.4e-08 Score=87.61 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=58.2
Q ss_pred CCCcEEEEeCCCCcccC-CC-CCCCEEEEECCEEeCC--CCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEEE
Q 008087 352 QKGVRIRRVDPTAPESE-VL-KPSDIILSFDGIDIAN--DGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFN 427 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-GL-~~GDiIl~InG~~V~~--~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~ 427 (578)
..|++|..|.++|||++ || ++||+|++|||+++.+ +.+ +..++.. ..|+.+.|+|.|+|+..++.
T Consensus 25 ~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~----------~~~~l~~-~~g~~v~l~v~R~g~~~~~~ 93 (112)
T 1qau_A 25 KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDS----------ALEVLRG-IASETHVVLILRGPEGFTTH 93 (112)
T ss_dssp SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHH----------HHHHHHH-SCSSSEEEEEEECCTTSEEE
T ss_pred CCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHH----------HHHHHHh-CCCCcEEEEEEeCCcccceE
Confidence 35899999999999999 98 9999999999999998 444 4455554 46889999999999887777
Q ss_pred EEecc
Q 008087 428 ITLAT 432 (578)
Q Consensus 428 v~l~~ 432 (578)
+....
T Consensus 94 ~~~~~ 98 (112)
T 1qau_A 94 LETTF 98 (112)
T ss_dssp EEEEE
T ss_pred eeeec
Confidence 76543
No 163
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.70 E-value=3.7e-09 Score=92.31 Aligned_cols=62 Identities=16% Similarity=0.310 Sum_probs=53.4
Q ss_pred CCCcEEEEeCC--CCcccC-CCCCCCEEEEECCEEeCCC--CCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEE
Q 008087 352 QKGVRIRRVDP--TAPESE-VLKPSDIILSFDGIDIAND--GTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILN 425 (578)
Q Consensus 352 ~~Gv~V~~V~p--~spA~~-GL~~GDiIl~InG~~V~~~--~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~ 425 (578)
..|++|..|.+ +|||++ ||++||+|++|||++|.+| .+ +..++... |+.+.|+|.|+|+.++
T Consensus 43 ~~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~d----------l~~~l~~~--g~~v~l~v~R~g~~~~ 109 (118)
T 2yub_A 43 ATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEE----------VEDAIKQT--SQTLQLLIEHDPVPQR 109 (118)
T ss_dssp CCEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHH----------HHHHHHCC--SSCEEEEEEECSSCCC
T ss_pred CCcEEEEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHH----------HHHHHHhC--CCEEEEEEEECCEEEe
Confidence 46899999999 999999 9999999999999999999 66 44566554 8899999999987644
No 164
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Probab=98.69 E-value=7.7e-08 Score=85.30 Aligned_cols=99 Identities=21% Similarity=0.169 Sum_probs=67.4
Q ss_pred CCCCCccccCCC---cceEEEEEEEcCCEEEecccccCCCceEEEEEcC--------CCcEEEEEEEEEcC-------CC
Q 008087 135 PNFSLPWQRKRQ---YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKKRG--------SDTKYLATVLAIGT-------EC 196 (578)
Q Consensus 135 ~~~~~p~~~~~~---~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~--------~g~~~~a~vv~~d~-------~~ 196 (578)
....+||+.... ....|+|.+|++.||||+|||+.+ ..+.|.+.. ..+.+..+-+..++ .+
T Consensus 8 ~~~~~Pw~v~l~~~~~~~~CgGsLIs~~~VLTAAHC~~~-~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~ 86 (131)
T 1yph_C 8 VPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVT-TSDVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINN 86 (131)
T ss_dssp CTTSSTTEEEEECTTSCEEEEEEEEETTEEEECGGGCCC-TTSEEEESCSBTTCSSSCCEEEEEEEEEECTTCCTTTCCS
T ss_pred CCCCcCcEEEEEeCCCCEEEEEEEeeCCEEEECHHHCCC-CCeEEEEeEccCCCCCCceEEEEEEEEEeCCCCCCCCCCC
Confidence 334567766543 235799999999999999999976 445566521 12234444444443 46
Q ss_pred CEEEEEEeeC-CCCCCeeeEEcCCCC---CCCCcEEEEeecC
Q 008087 197 DIAMLTVEDD-EFWEGVLPVEFGELP---ALQDAVTVVGYPI 234 (578)
Q Consensus 197 DlAlLkv~~~-~~~~~~~~l~l~~~~---~~g~~V~~iG~p~ 234 (578)
|||||+++.+ .+...+.|+.|.... ..|+.+++.||..
T Consensus 87 DIALl~L~~~~~~~~~v~picLp~~~~~~~~g~~~~v~GWG~ 128 (131)
T 1yph_C 87 DITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGL 128 (131)
T ss_dssp CCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCC
T ss_pred CEEEEEECCcccCCCcCcceECCCcccCCCCCCEEEEEcCCc
Confidence 9999999976 344568888887533 3578899999764
No 165
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.68 E-value=2.5e-08 Score=95.98 Aligned_cols=84 Identities=20% Similarity=0.225 Sum_probs=67.3
Q ss_pred cccCCcccccccChhhhhhhccccCCCCcEEEEeCCCCcccC-CCCC-CCEEEEECCEEeCCCCCCccccCcchhHHHHH
Q 008087 327 FPLLGVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESE-VLKP-SDIILSFDGIDIANDGTVPFRHGERIGFSYLV 404 (578)
Q Consensus 327 ~~~lGi~~~~~~~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-GL~~-GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~ 404 (578)
+++||+.+..+ +++.+. ..|++|..|.++|||++ ||++ ||+|++|||+ |.++.+ |...+
T Consensus 94 ~~~lGi~~~~~-~~~~~~-------~~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~~~~~----------l~~~l 154 (209)
T 3rle_A 94 QGLLGVSIRFC-SFDGAN-------ENVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MNESED----------LFSLI 154 (209)
T ss_dssp SSSSCEEEEEE-ECTTGG-------GSCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CCSSSC----------HHHHH
T ss_pred cCccceEEeec-ChhHcc-------ccceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eCCHHH----------HHHHH
Confidence 57899998876 444332 25899999999999999 9999 9999999998 999988 56777
Q ss_pred hccCCCCEEEEEEEECCE--EEEEEEEe
Q 008087 405 SQKYTGDSAAVKVLRDSK--ILNFNITL 430 (578)
Q Consensus 405 ~~~~~g~~v~l~V~R~g~--~~~~~v~l 430 (578)
... .|+.+.|+|+|++. ..+++++.
T Consensus 155 ~~~-~g~~v~l~v~r~~~~~~~~v~l~p 181 (209)
T 3rle_A 155 ETH-EAKPLKLYVYNTDTDNCREVIITP 181 (209)
T ss_dssp HHT-TTSCEEEEEEETTTTEEEEEEECC
T ss_pred HhC-CCCeEEEEEEECCceEEEEEEEEe
Confidence 765 78999999999764 34455443
No 166
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=98.67 E-value=4.4e-08 Score=108.57 Aligned_cols=79 Identities=15% Similarity=0.331 Sum_probs=67.1
Q ss_pred hhccc--cCCCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECC
Q 008087 345 AMSMK--ADQKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDS 421 (578)
Q Consensus 345 ~lgl~--~~~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g 421 (578)
.+|+. .+..|++|..|.++|||++ ||++||+|++|||++| ++.+ +..++.....|++|.|+|.|+|
T Consensus 486 ~lG~~~~~~~~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v-~~~~----------l~~~l~~~~~g~~v~l~v~R~g 554 (597)
T 4fgm_A 486 NFGAKYKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQA-TEQS----------VKRILERYIPGDTVTIHAFRRD 554 (597)
T ss_dssp CCSEEEEEETTEEEEEEECTTSHHHHHTCCTTCEEEEETTEEC-CTTT----------HHHHHTTCCTTCEEEEEEEETT
T ss_pred ccceEEeccCCeEEEEEeCCCChHHHCCCCCCCEEEEECCEEC-CHHH----------HHHHHHhcCCCCEEEEEEEECC
Confidence 56653 3345899999999999999 9999999999999999 5666 6677777678999999999999
Q ss_pred EEEEEEEEecccc
Q 008087 422 KILNFNITLATHR 434 (578)
Q Consensus 422 ~~~~~~v~l~~~~ 434 (578)
+.+++++++...+
T Consensus 555 ~~~~~~v~l~~~~ 567 (597)
T 4fgm_A 555 ELMTLELTWQEPA 567 (597)
T ss_dssp EEEEEEEECCCCC
T ss_pred EEEEEEEEecCCC
Confidence 9999999887543
No 167
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=98.67 E-value=3.9e-08 Score=80.86 Aligned_cols=60 Identities=18% Similarity=0.355 Sum_probs=47.1
Q ss_pred CCCcEEEEeCCCCcccCCCCCCCEEEEECCEEeCCC--CCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 352 QKGVRIRRVDPTAPESEVLKPSDIILSFDGIDIAND--GTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~GL~~GDiIl~InG~~V~~~--~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
..|++|..+ ++|||+.||++||+|++|||+++.++ .+ +..++.....|+++.|+|.|+|+
T Consensus 26 ~~~~~v~~v-~~spA~aGl~~GD~I~~vng~~v~~~~~~~----------~~~~l~~~~~g~~v~l~v~R~g~ 87 (88)
T 3bpu_A 26 GGGQRVKQI-VDSPRSRGLKEGDLIVEVNKKNVQALTHNQ----------VVDMLVESPKGSEVTLLVQRQTR 87 (88)
T ss_dssp SSSEEEEEC-CC--CCTTCCTTCEEEEETTEECTTSCHHH----------HHHHHHTSCTTCEEEEEEEEECC
T ss_pred CCcEEEEEe-cCChhHhCCCCCCEEEEECCEEcCCCCHHH----------HHHHHHhCCCCCEEEEEEEeCCc
Confidence 358888887 99999889999999999999999998 33 33455545578999999999874
No 168
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=98.65 E-value=4.4e-08 Score=81.50 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=50.1
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.|++|..|.++|||++ ||++||+|++|||++|.++.+. +++.....|+.+.|+|+|++.
T Consensus 29 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~-----------~~~~~~~~g~~v~l~v~R~~~ 88 (93)
T 2dls_A 29 RIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHL-----------EVVKLIKSGAYVALTLLGSSS 88 (93)
T ss_dssp SSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHH-----------HHHHHHTSSSEEEEEEECCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHH-----------HHHHhhcCCCEEEEEEEECCC
Confidence 4899999999999999 9999999999999999987652 344444579999999999764
No 169
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=98.64 E-value=5.4e-08 Score=83.10 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=52.2
Q ss_pred CCCcEEEEeCCCCcccCCCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 352 QKGVRIRRVDPTAPESEVLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
..|++|..|.++|||+.||++||+|++|||++|.++.+ +...+.....|+.+.|+|.|+|+.
T Consensus 38 ~~gv~V~~V~~~spA~agl~~GD~I~~vng~~v~~~~~----------~~~~~~~~~~g~~v~l~v~R~~~~ 99 (107)
T 2h2b_A 38 ETSIVISDVLKGGPAEGQLQENDRVAMVNGVSMDNVEH----------AFAVQQLRKSGKNAKITIRRKKGG 99 (107)
T ss_dssp CCCEEEEEECTTSTTBTTBCTTCEEEEETTEECTTCCH----------HHHHHHHHTCCSEEEEEEEEESCC
T ss_pred CCCEEEEEECCCCchhhCCCCCCEEEEECCEECCCccH----------HHHHHHhhCCCCEEEEEEEECCCC
Confidence 45899999999999988999999999999999999976 334444445789999999998764
No 170
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=98.64 E-value=1.9e-09 Score=93.52 Aligned_cols=67 Identities=21% Similarity=0.303 Sum_probs=53.1
Q ss_pred CCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEEEE
Q 008087 352 QKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNI 428 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v 428 (578)
..|++|..|.++|||++ ||++||+|++|||++|.++... .+..++.. .|+.+.|+|.|+|+..++.+
T Consensus 37 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~--------~~~~~l~~--~g~~v~l~v~R~~~~~~~~~ 104 (114)
T 2edz_A 37 TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHA--------QVVELVRK--SGNSVTLLVLDGDSYEKAVK 104 (114)
T ss_dssp CCSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSSSCHH--------HHHHHHHH--TCSEEEEEEECHHHHHHHHH
T ss_pred CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHH--------HHHHHHHc--CCCEEEEEEEECCcceehhh
Confidence 46999999999999999 9999999999999999986221 03344443 48999999999887655443
No 171
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.63 E-value=1.6e-08 Score=85.47 Aligned_cols=60 Identities=17% Similarity=0.198 Sum_probs=50.7
Q ss_pred CCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 352 QKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
..|++|..|.++|||++ ||++||+|++|||++|.++.+. .++.....++.+.|+|+|+|+
T Consensus 34 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~-----------~~~~~~~~~~~v~l~v~R~g~ 94 (101)
T 1uez_A 34 GVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHA-----------EAVKALKGSKKLVLSVYSAGR 94 (101)
T ss_dssp TCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHH-----------HHHHHSSSSSSCCEEECCCCC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHH-----------HHHHhhcCCCeEEEEEEECCc
Confidence 35899999999999999 9999999999999999998762 344444567788999999876
No 172
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.62 E-value=1e-08 Score=85.62 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=49.6
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCC--CCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIAND--GTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~--~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
.|++|..|.++|||++ ||++||+|++|||++|.++ .+ +..++... ++.+.|+|.|+|+.
T Consensus 30 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~----------~~~~l~~~--~~~v~l~v~R~g~~ 91 (94)
T 1vb7_A 30 TPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAE----------AQSKIRQS--ASPLRLQLDRSSGP 91 (94)
T ss_dssp EEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHH----------HHHHHHTC--CSSEEEEEECCCCC
T ss_pred CCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHH----------HHHHHHhC--CCcEEEEEEECCcC
Confidence 4899999999999999 9999999999999999997 44 34555443 37899999999864
No 173
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=98.62 E-value=4.4e-08 Score=81.75 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=48.9
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
..|++|..|.++|||++ | |++||+|++|||+++.+..... ....+. ..|+.+.|+|.|+|+
T Consensus 28 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~--------~~~~~~--~~g~~v~l~v~R~~~ 90 (95)
T 2vwr_A 28 EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPEL--------AAQIIQ--ASGERVNLTIARPGK 90 (95)
T ss_dssp SCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHH--------HHHHHH--HCCSEEEEEEEEESC
T ss_pred CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHH--------HHHHHH--cCCCEEEEEEEcCCc
Confidence 35899999999999999 9 9999999999999998865421 112222 358999999999775
No 174
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=98.61 E-value=7e-09 Score=86.85 Aligned_cols=61 Identities=15% Similarity=0.234 Sum_probs=50.8
Q ss_pred CCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCC--CCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEE
Q 008087 352 QKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIAND--GTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKIL 424 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~--~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~ 424 (578)
..|++|..|.++|||++ ||++||+|++|||++|.++ .+ +..++.. .|+.+.|+|.|+|+..
T Consensus 29 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~----------~~~~l~~--~g~~v~l~v~r~~~~~ 92 (96)
T 2v90_A 29 RPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEE----------TVSRIQG--QGSCVSLTVVDPEADR 92 (96)
T ss_dssp CEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHH----------HHHHHHT--TTTEEEEEEECCCTTS
T ss_pred CCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHH----------HHHHHHc--CCCEEEEEEECCCCcc
Confidence 34899999999999999 9999999999999999984 33 3445544 3899999999988654
No 175
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=98.61 E-value=5.8e-08 Score=83.49 Aligned_cols=63 Identities=16% Similarity=0.316 Sum_probs=51.4
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
.|++|..|.++|||++ | |++||+|++|||++|.++..- .+..++.....|+.+.|+|.|+|+.
T Consensus 39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~--------~~~~~l~~~~~g~~v~l~v~R~~~~ 103 (111)
T 2koj_A 39 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQE--------EVVSLLRSTKMEGTVSLLVFRQEEA 103 (111)
T ss_dssp SCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHH--------HHHHHHHHCCCSSEEEEEEEECCCC
T ss_pred cCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHH--------HHHHHHHhCCCCCeEEEEEEeCCCC
Confidence 5899999999999999 9 999999999999999876311 1345555544689999999998864
No 176
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=98.60 E-value=4e-08 Score=82.45 Aligned_cols=61 Identities=25% Similarity=0.340 Sum_probs=49.2
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
..|++|..|.++|||++ | |++||+|++|||++|.++.... +..++.. .|+.+.|+|.|+|+
T Consensus 36 ~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~--------~~~~l~~--~g~~v~l~v~R~g~ 98 (98)
T 1ihj_A 36 TTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQA--------VIDLIKE--ADFKIELEIQTFDK 98 (98)
T ss_dssp EEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHH--------HHHHHHH--SCSEEEEEEEEC--
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHhc--CCCeEEEEEEeCCC
Confidence 34899999999999999 9 9999999999999999984311 3344544 68999999999874
No 177
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.59 E-value=2.4e-08 Score=88.32 Aligned_cols=70 Identities=21% Similarity=0.183 Sum_probs=58.3
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEEEEEec
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNITLA 431 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v~l~ 431 (578)
.|++|..|.++|||++ ||++||+|++|||++|.++.+ .+++.....++.+.|+|.|+|+..++.+++.
T Consensus 46 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~-----------~~~~~~~~~~~~v~l~v~R~g~~~~~~v~~~ 114 (128)
T 1uf1_A 46 LGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILH-----------DEAVRLLKSSRHLILTVKDVGRLPHARTTVD 114 (128)
T ss_dssp CCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCH-----------HHHHHHHTTCSEEEEEEECCSCCSSCSCCCC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCH-----------HHHHHHHhcCCeEEEEEEECCcccccccccc
Confidence 4899999999999999 999999999999999999754 1344444557899999999999887777665
Q ss_pred cc
Q 008087 432 TH 433 (578)
Q Consensus 432 ~~ 433 (578)
..
T Consensus 115 ~~ 116 (128)
T 1uf1_A 115 ET 116 (128)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 178
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=98.59 E-value=3e-08 Score=81.32 Aligned_cols=58 Identities=16% Similarity=0.242 Sum_probs=49.1
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCC--CCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIAND--GTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~--~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.|++|..|.++|||++ ||++||+|++|||+++.++ .+ +..++.... +.+.|+|.|+|+
T Consensus 26 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~----------~~~~l~~~~--~~v~l~v~R~~~ 86 (87)
T 2pa1_A 26 TPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAE----------AQSKIRQSP--SPLRLQLDRITS 86 (87)
T ss_dssp EEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHH----------HHHHHHTCC--SSEEEEEEECCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHH----------HHHHHHcCC--CeEEEEEEecCC
Confidence 4899999999999999 9999999999999999984 44 445565543 789999999875
No 179
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=98.59 E-value=5.8e-08 Score=82.70 Aligned_cols=69 Identities=12% Similarity=0.127 Sum_probs=49.1
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEEEEE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNIT 429 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v~ 429 (578)
..|++|..|.++|||++ | |++||+|++|||+++.+..... +...+ ...++.+.|+|.|+++...+.++
T Consensus 32 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~--------~~~~~--~~~~~~v~l~v~R~~~~~~~~~~ 101 (105)
T 2awx_A 32 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEE--------AVTAL--KNTSDFVYLKVAKPTSMYISRHH 101 (105)
T ss_dssp BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHH--------HHHHH--HSCCSEEEEEEECCCC-------
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHH--------HHHHH--HcCCCeEEEEEEcCCCCCCcccc
Confidence 35899999999999999 9 9999999999999998754311 11222 23478999999999987776655
Q ss_pred e
Q 008087 430 L 430 (578)
Q Consensus 430 l 430 (578)
.
T Consensus 102 p 102 (105)
T 2awx_A 102 H 102 (105)
T ss_dssp -
T ss_pred c
Confidence 4
No 180
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=98.59 E-value=4.3e-08 Score=80.53 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=48.6
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.+++|..|.++|||++ ||++||+|++|||+++.++.... +..++.. .++.+.|+|.|+|.
T Consensus 27 ~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~--------~~~~~~~--~g~~v~l~v~R~g~ 87 (88)
T 2uzc_A 27 MPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLE--------AQNKIKG--CTGSLNMTLQRESD 87 (88)
T ss_dssp EEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHH--------HHHHHHT--CCSEEEEEEECCCC
T ss_pred CCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHH--------HHHHHHh--CCCeEEEEEEeCCC
Confidence 4799999999999999 99999999999999999984210 2334433 38899999999874
No 181
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=98.58 E-value=3.5e-08 Score=86.90 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=52.7
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCC--CCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIAND--GTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~--~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
.|++|..|.++|||++ ||++||+|++|||++|.++ .+ +...+.....|+.+.|+|.|+++.
T Consensus 51 ~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~----------~~~~l~~~~~g~~v~l~v~R~~~~ 114 (124)
T 3tsv_A 51 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREE----------AVLFLLDLPKGEEVTILAQKKKDV 114 (124)
T ss_dssp SCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHH----------HHHHHHHSCTTCEEEEEEEECHHH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH----------HHHHHHhcCCCCEEEEEEEECCch
Confidence 5899999999999999 9999999999999999998 44 445566556889999999998753
No 182
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=98.57 E-value=4.6e-08 Score=80.79 Aligned_cols=59 Identities=24% Similarity=0.400 Sum_probs=49.6
Q ss_pred CCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCC--CCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 352 QKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIAND--GTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~--~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
..|++|..|.++|||++ ||++||+|++|||++|.++ .+ +..++... |+.+.|+|.|.+.
T Consensus 27 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~----------~~~~l~~~--~~~v~l~v~r~~~ 88 (90)
T 2he4_A 27 RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAE----------VVASIKAR--EDEARLLVVGPST 88 (90)
T ss_dssp SSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHH----------HHHHHTTS--SSEEEEEEECCCC
T ss_pred CCCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHH----------HHHHHHcC--CCcEEEEEEccCC
Confidence 35899999999999999 9999999999999999998 43 34555443 7899999999764
No 183
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=98.57 E-value=9e-08 Score=81.74 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=52.6
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE-EEEEEE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK-ILNFNI 428 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~-~~~~~v 428 (578)
..|++|..|.++|||++ | |++||+|++|||++|.++.... +..++ ...++.+.|+|.|+++ ...+++
T Consensus 31 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~--------~~~~l--~~~~~~v~l~v~R~~~~~~~~~v 100 (106)
T 4amh_A 31 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEE--------AVTAL--KNTSDFVYLKVAKPGSGEKIMEI 100 (106)
T ss_dssp BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHH--------HHHHH--HSCCSEEEEEEECCSSSCSEEEE
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHH--------HHHHH--hCCCCeEEEEEEeCCCCCeEEEE
Confidence 45899999999999999 9 9999999999999998754311 22233 2357899999999875 333445
Q ss_pred Eec
Q 008087 429 TLA 431 (578)
Q Consensus 429 ~l~ 431 (578)
++.
T Consensus 101 ~l~ 103 (106)
T 4amh_A 101 KLI 103 (106)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 184
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=98.57 E-value=2.2e-08 Score=83.90 Aligned_cols=60 Identities=30% Similarity=0.434 Sum_probs=50.9
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCC--CCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIAN--DGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~--~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
..|++|..|.++|||++ | |++||+|++|||+++.+ +.+ +..++.. .|+.+.|+|.|+++.
T Consensus 31 ~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~----------~~~~l~~--~g~~v~l~v~R~~~~ 94 (97)
T 2jil_A 31 SRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAE----------AMSILKQ--CGQEAALLIEYDVSE 94 (97)
T ss_dssp CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHH----------HHHHHHH--SCSEEEEEEEEECCC
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHH----------HHHHHHc--CCCeEEEEEEeCCCc
Confidence 35899999999999999 9 99999999999999998 444 3455554 789999999998764
No 185
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.57 E-value=8.1e-08 Score=84.61 Aligned_cols=67 Identities=27% Similarity=0.444 Sum_probs=56.4
Q ss_pred CCCcEEEEeCCCCcccCCCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEEEEEec
Q 008087 352 QKGVRIRRVDPTAPESEVLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNITLA 431 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v~l~ 431 (578)
..|++|..|.++|||++.|++||+|++|||++|.+|.+ |...+.....|+.+.|+| |+|+ +++++.
T Consensus 24 ~~gv~V~~V~~~spA~~aL~~GD~Il~InG~~v~~~~d----------l~~~l~~~~~g~~v~l~V-R~g~---~~v~l~ 89 (125)
T 2hga_A 24 PDGVQIDSVVPGSPASKVLTPGLVIESINGMPTSNLTT----------YSAALKTISVGEVINITT-DQGT---FHLKTG 89 (125)
T ss_dssp CCCEEEEEECSSSGGGGTSCTTCEEEEETTEECSSHHH----------HHHHHTTCCTTCEEEEEE-TTEE---EEEECC
T ss_pred CCceEEEEECCCChHHHhcCCCCEEEEECCEEcCCHHH----------HHHHHHhcCCCCEEEEEE-ECCE---EEEEEe
Confidence 46899999999999977799999999999999999987 556666556789999999 9987 555554
Q ss_pred c
Q 008087 432 T 432 (578)
Q Consensus 432 ~ 432 (578)
.
T Consensus 90 ~ 90 (125)
T 2hga_A 90 R 90 (125)
T ss_dssp B
T ss_pred c
Confidence 3
No 186
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.56 E-value=1.7e-08 Score=85.81 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=50.0
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCC--CCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIAN--DGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~--~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
.+++|..|.++|||++ ||++||+|++|||++|.+ +.+ +..++... ++.+.|+|.|+|+.
T Consensus 29 ~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~----------~~~~l~~~--g~~v~l~v~R~g~~ 90 (103)
T 1v5l_A 29 QPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHAD----------AQDRIKAA--SYQLCLKIDRAETR 90 (103)
T ss_dssp EEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHH----------HHHHHTTC--CSEEECEECCCTTT
T ss_pred CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH----------HHHHHHhC--CCeEEEEEEECCeE
Confidence 3789999999999999 999999999999999998 554 44555543 89999999998864
No 187
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=98.56 E-value=1.4e-08 Score=89.95 Aligned_cols=82 Identities=15% Similarity=0.198 Sum_probs=60.6
Q ss_pred cCCcccccccChhhhhhhccccCCCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhc
Q 008087 329 LLGVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQ 406 (578)
Q Consensus 329 ~lGi~~~~~~~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~ 406 (578)
.||+.+... ....+..+|+.. ..|++|..|.++|||++ | |++||+|++|||++|.+...-. +..++..
T Consensus 43 ~lG~~i~~~-~~~~~~~~g~~~-~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~--------~~~~l~~ 112 (128)
T 1nf3_C 43 PLGFYIRDG-SSVRVTPHGLEK-VPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQ--------VTDMMIA 112 (128)
T ss_dssp CCCEEEEEE-EEEEEETTEEEE-EEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHH--------HHHHHHH
T ss_pred CccEEEEcc-ccccccccccCC-CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHc
Confidence 477777765 444555566644 35899999999999999 9 9999999999999995543210 3344443
Q ss_pred cCCCCEEEEEEEECCE
Q 008087 407 KYTGDSAAVKVLRDSK 422 (578)
Q Consensus 407 ~~~g~~v~l~V~R~g~ 422 (578)
.++.+.|+|.|+|+
T Consensus 113 --~~~~v~l~v~r~~~ 126 (128)
T 1nf3_C 113 --NSRNLIITVRPANQ 126 (128)
T ss_dssp --TTTSEEEEEECCCC
T ss_pred --CCCeEEEEEEECCc
Confidence 46679999999875
No 188
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.55 E-value=9.8e-08 Score=78.89 Aligned_cols=58 Identities=22% Similarity=0.394 Sum_probs=47.4
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEEC
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRD 420 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~ 420 (578)
.|++|..|.++|||++ ||++||+|++|||+++.++.+.. +..++. ..|+.+.|+|.|+
T Consensus 32 ~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~--------~~~~~~--~~g~~v~l~v~R~ 90 (91)
T 1m5z_A 32 KGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCL--------VVPLIA--ESGNKLDLVISRN 90 (91)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHH--------HHHHHH--TSTTEEEEEEEEC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH--------HHHHHH--cCCCEEEEEEEeC
Confidence 5899999999999999 99999999999999999986421 112222 3588999999886
No 189
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=98.55 E-value=5.8e-08 Score=79.14 Aligned_cols=60 Identities=12% Similarity=0.297 Sum_probs=47.4
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.|++|..|.++|||++ ||++||+|++|||+++.++.... +..++. ..++.+.|+|.|+|+
T Consensus 25 ~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~--------~~~~~~--~~~~~v~l~v~R~~~ 85 (85)
T 1rgw_A 25 MPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE--------AQNKIK--SASYNLSLTLQKSKR 85 (85)
T ss_dssp SCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHH--------HHHHHT--TCSSCEEEEEESCCC
T ss_pred CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHH--------HHHHHH--cCCCeEEEEEEeCCC
Confidence 4899999999999999 99999999999999999984211 222222 246779999999863
No 190
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=98.53 E-value=1.9e-08 Score=84.47 Aligned_cols=60 Identities=23% Similarity=0.417 Sum_probs=50.1
Q ss_pred CCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCC--CCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 352 QKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIAN--DGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~--~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
..|++|..|.++|||++ ||++||+|++|||++|.+ +.+ +..++... .++.+.|+|.|+|+
T Consensus 32 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~----------~~~~l~~~-~~~~~~l~v~R~g~ 94 (98)
T 2jxo_A 32 KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGD----------VVSAIRAG-GDETKLLVVDRETD 94 (98)
T ss_dssp SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHH----------HHHHHHTT-TTEEEEEECCHHHH
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH----------HHHHHHhC-CCcEEEEEEECCch
Confidence 35899999999999999 999999999999999998 544 44566555 67778899988765
No 191
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=98.53 E-value=1e-07 Score=83.44 Aligned_cols=62 Identities=15% Similarity=0.310 Sum_probs=50.7
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.|++|..|.++|||++ | |++||+|++|||++|.++..- .+..++.....|+.+.|+|.|+|+
T Consensus 58 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~--------~~~~~l~~~~~g~~v~l~v~R~g~ 121 (121)
T 2kom_A 58 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQE--------EVVSLLRSTKMEGTVSLLVFRQED 121 (121)
T ss_dssp CCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHH--------HHHHHHHHCCSSCEEEEEEEECCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHH--------HHHHHHhcCCCCCEEEEEEEeCCC
Confidence 5899999999999999 9 999999999999999986310 134555554468999999999874
No 192
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.52 E-value=2.5e-08 Score=88.08 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=57.1
Q ss_pred CCcEEEEeCCCCcccC-CC-CCCCEEEEECCEEeCC--CCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEEEE
Q 008087 353 KGVRIRRVDPTAPESE-VL-KPSDIILSFDGIDIAN--DGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNI 428 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL-~~GDiIl~InG~~V~~--~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v 428 (578)
.|++|..|.++|||++ || ++||+|++|||++|.+ +.+ +..++.. ..|+.+.|+|.|+|+..++.+
T Consensus 33 ~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~----------~~~~l~~-~~g~~v~l~v~R~g~~~~~~~ 101 (127)
T 1b8q_A 33 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDS----------ALEVLRG-IASETHVVLILRGPEGFTTHL 101 (127)
T ss_dssp SCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHH----------HHHHHHS-CCSSCEEEEEECCCCSEEECC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH----------HHHHHHh-CCCCeEEEEEEeCCceEEEEE
Confidence 4899999999999999 98 9999999999999998 444 4455554 468899999999998887776
Q ss_pred Eec
Q 008087 429 TLA 431 (578)
Q Consensus 429 ~l~ 431 (578)
.+.
T Consensus 102 ~~~ 104 (127)
T 1b8q_A 102 ETT 104 (127)
T ss_dssp CCC
T ss_pred EEE
Confidence 653
No 193
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.51 E-value=1.5e-08 Score=85.98 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=52.7
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEEEEE
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNIT 429 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v~ 429 (578)
.+++|..|.++|||++ ||++||+|++|||+++.++.... +..++.. .++.+.|+|+|+++..++.++
T Consensus 29 ~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~--------~~~~~~~--~g~~v~l~v~R~g~~~~~~v~ 96 (103)
T 1wf7_A 29 MPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLE--------AQNKIKA--CTGSLNMTLQRASAAAKSEPV 96 (103)
T ss_dssp EEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHH--------HHHHHHH--CSSEEEEEECCCSCCCCCCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH--------HHHHHHc--CCCeEEEEEEeCCCcCCCCCC
Confidence 3689999999999999 99999999999999999984311 2223333 478999999999987665544
No 194
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=98.51 E-value=1.2e-07 Score=79.51 Aligned_cols=62 Identities=19% Similarity=0.213 Sum_probs=49.5
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKIL 424 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~ 424 (578)
.|++|..|.++|||++ | |++||+|++|||+++.++.... +..++. ..++.+.|+|.|+++..
T Consensus 30 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~--------~~~~~~--~~~~~v~l~v~R~~~~~ 93 (98)
T 2opg_A 30 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDE--------AINVLR--QTPQRVRLTLYRDEAPY 93 (98)
T ss_dssp CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHH--------HHHHHH--TCCSEEEEEEEECSSCC
T ss_pred CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHH--------HHHHHH--hCCCeEEEEEEcCCCCC
Confidence 5899999999999999 9 9999999999999999875211 222333 24589999999988654
No 195
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=98.51 E-value=9.1e-08 Score=78.77 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=47.9
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.|++|..|.++|||++ ||++||+|++|||+++.++.... +..++.. .|+.+.|+|.|+++
T Consensus 27 ~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~--------~~~~~~~--~g~~v~l~v~R~~~ 87 (89)
T 2q3g_A 27 VPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIE--------AQNKIRA--CGERLSLGLSRAIT 87 (89)
T ss_dssp EEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHH--------HHHHHHT--CTTEEEEEEEEECC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH--------HHHHHHh--CCCEEEEEEEeCCC
Confidence 4799999999999999 99999999999999999773211 2233332 47899999999875
No 196
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=6.9e-08 Score=80.45 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=48.4
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.+++|..|.++|||++ ||++||+|++|||++|.++.... +..++. ..++.+.|+|.|+|+
T Consensus 32 ~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~--------~~~~~~--~~g~~v~l~v~R~g~ 92 (94)
T 2eeg_A 32 APLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLE--------AQNRIK--GCHDHLTLSVSSGPS 92 (94)
T ss_dssp SCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHH--------HHHHHH--TCCSCEEEEEECCSS
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH--------HHHHHH--cCCCeEEEEEEeCCC
Confidence 4799999999999999 99999999999999999974311 222332 267889999999875
No 197
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.50 E-value=9.5e-08 Score=81.23 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=54.5
Q ss_pred ccCCcccccccChhhhhhhccccCCCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCC--CCCCccccCcchhHHHHH
Q 008087 328 PLLGVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIAN--DGTVPFRHGERIGFSYLV 404 (578)
Q Consensus 328 ~~lGi~~~~~~~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~--~~~v~~~~~~~~~~~~~~ 404 (578)
+++|+.+..-. ....|++|..|.++|||++ ||++||+|++|||++|.+ +.+ +..++
T Consensus 27 ~~lG~~~~~~~-----------~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~----------~~~~l 85 (104)
T 1wi2_A 27 AQLGFNIRGGK-----------ASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSK----------AVEIL 85 (104)
T ss_dssp CCCSEEEECCS-----------SSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHH----------HHHHH
T ss_pred CCccEEEEccc-----------CCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHH----------HHHHH
Confidence 56788776421 1135899999999999999 999999999999999998 333 33444
Q ss_pred hccCCCCEEEEEEEECCE
Q 008087 405 SQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 405 ~~~~~g~~v~l~V~R~g~ 422 (578)
.. ++.+.|+|.|+..
T Consensus 86 ~~---~~~v~l~v~r~~~ 100 (104)
T 1wi2_A 86 KT---AREISMRVRFFSG 100 (104)
T ss_dssp HH---SSSEEEEEECCCC
T ss_pred hC---CCEEEEEEEECCC
Confidence 43 7889999988653
No 198
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=98.50 E-value=2e-07 Score=77.76 Aligned_cols=79 Identities=14% Similarity=0.259 Sum_probs=56.5
Q ss_pred cccCCcccccccChhhhhhhccccCCCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHH
Q 008087 327 FPLLGVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLV 404 (578)
Q Consensus 327 ~~~lGi~~~~~~~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~ 404 (578)
...||+.+....... .....|++|..|.++|||++ | |++||+|++|||+++.++.... +..++
T Consensus 14 ~~~lG~~i~~~~~~~-------~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~--------~~~~~ 78 (97)
T 2iwn_A 14 VQGLGITIAGYIGDK-------KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQ--------AVEVL 78 (97)
T ss_dssp TTBSCEEEECCCCC-----------CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHH--------HHHHH
T ss_pred CCCCcEEEEccCCCC-------CCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHH--------HHHHH
Confidence 345788776431110 01245899999999999999 9 9999999999999999875311 22233
Q ss_pred hccCCCCEEEEEEEECCE
Q 008087 405 SQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 405 ~~~~~g~~v~l~V~R~g~ 422 (578)
. ..++.+.|+|.|+|+
T Consensus 79 ~--~~~~~v~l~v~r~g~ 94 (97)
T 2iwn_A 79 R--HTGQTVLLTLMRRGE 94 (97)
T ss_dssp H--TCCSEEEEEEEEEEE
T ss_pred H--cCCCeEEEEEEeCCC
Confidence 3 278899999999775
No 199
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=98.50 E-value=1.5e-07 Score=78.21 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=48.1
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
..|++|..|.++|||++ | |++||+|++|||+++.++.... +..++. ..++.+.|+|.|+|+
T Consensus 32 ~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~--------~~~~~~--~~~~~v~l~v~R~g~ 94 (94)
T 2fe5_A 32 DNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEE--------AVASLK--NTSDMVYLKVAKPGS 94 (94)
T ss_dssp BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHH--------HHHHHH--TCCSEEEEEEECCCC
T ss_pred CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHH--cCCCeEEEEEEcCCC
Confidence 45899999999999999 9 9999999999999999874311 222332 246789999999864
No 200
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.50 E-value=1e-07 Score=84.25 Aligned_cols=96 Identities=11% Similarity=0.111 Sum_probs=68.0
Q ss_pred cCCCCEEEEEEEECCEEEEEEEEecccccccCCCCCCCCCCceeeccEEEeehHHHHHHhchhhhhhhhhcccccccccc
Q 008087 407 KYTGDSAAVKVLRDSKILNFNITLATHRRLIPSHNKGRPPSYYIIAGFVFSRCLYLISVLSMERIMNMKLRSSFWTSSCI 486 (578)
Q Consensus 407 ~~~g~~v~l~V~R~g~~~~~~v~l~~~~~~~~~~~~~~~p~~~~~~Gl~~~~~p~~~~~~g~~~~~~~~~l~~~~~~~~~ 486 (578)
..+|+++.++|+|+|+.+++.+++.... ..||.+.... .+
T Consensus 5 ~~~g~~v~l~v~R~g~~~~v~v~~~~~~----------------~lG~~~~~~~----~~-------------------- 44 (128)
T 1uf1_A 5 SSGDRRSTLHLLQGGDEKKVNLVLGDGR----------------SLGLTIRGGA----EY-------------------- 44 (128)
T ss_dssp CSTTTSCCSCCCCCSSEEEEEEECCSSC----------------CCCEEEECCT----TT--------------------
T ss_pred CCCCCEEEEEEEeCCcEEEEEEEECCCC----------------ccCEEEECcc----cC--------------------
Confidence 3578889999999999999998875320 1255443210 00
Q ss_pred ccCCCceEEEE----eecCCcCCCCCCCEEEEeCCeecCCH--HHHHHHHHhcCCCeEEEEEecCeEE
Q 008087 487 QCHNCQMSSLL----WCLRSPLCLNCFNKVLAFNGNPVKNL--KSLANMVENCDDEFLKFDLEYDQVV 548 (578)
Q Consensus 487 ~~~~~~~vvvs----~v~A~~aGl~~GD~I~~VNG~~V~~~--~~l~~~l~~~~~~~v~l~v~R~~~~ 548 (578)
..++++. +++|+++||++||+|++|||++|.++ .++.+.++. ++.+.|++.|++..
T Consensus 45 ----~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~v~l~v~R~g~~ 106 (128)
T 1uf1_A 45 ----GLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKS--SRHLILTVKDVGRL 106 (128)
T ss_dssp ----TCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTT--CSEEEEEEECCSCC
T ss_pred ----CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHhc--CCeEEEEEEECCcc
Confidence 0134444 45899999999999999999999986 445555554 46899999998754
No 201
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=98.49 E-value=2e-07 Score=77.10 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=47.8
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEE
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKIL 424 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~ 424 (578)
.|++|..|.++|||++ ||++||+|++|||++|.++.... +..++.. .++.+.|+|.|++...
T Consensus 24 ~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~--------~~~~l~~--~~~~v~l~v~R~~~~~ 86 (91)
T 2f5y_A 24 SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVE--------LAHEIRS--CPSEIILLVWRMVPQV 86 (91)
T ss_dssp SSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHH--------HHHHHHT--CSSEEEEEEEECC---
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH--------HHHHHHc--CCCeEEEEEEeCCCCC
Confidence 4799999999999999 99999999999999999874211 2333433 4678999999987653
No 202
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=98.49 E-value=6.1e-08 Score=82.64 Aligned_cols=62 Identities=23% Similarity=0.358 Sum_probs=50.7
Q ss_pred CCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 352 QKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
..|++|..|.++|||++ ||++||+|++|||+++.++.... +..++. ..|+.+.|+|.|+++.
T Consensus 25 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~--------~~~~l~--~~g~~v~l~v~r~~~~ 87 (106)
T 3ngh_A 25 TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQ--------VVELVR--KSGNSVTLLVLDGDSY 87 (106)
T ss_dssp CCSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHH--------HHHHHH--HTTTEEEEEEECHHHH
T ss_pred CCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHH--------HHHHHH--hCCCEEEEEEEECCee
Confidence 45899999999999999 99999999999999999987211 334454 3688999999997654
No 203
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=98.48 E-value=1.8e-07 Score=77.41 Aligned_cols=61 Identities=21% Similarity=0.207 Sum_probs=48.2
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
..|++|..|.++|||++ | |++||+|++|||+++.+..... +..++.. .++.+.|+|.|.+.
T Consensus 28 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~--------~~~~~~~--~~~~v~l~v~R~~~ 90 (92)
T 2qg1_A 28 DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEA--------VAALLKC--SLGTVTLEVGRIST 90 (92)
T ss_dssp SCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHH--------HHHHHHH--CCSEEEEEEECCCC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHc--CCCeEEEEEEcccc
Confidence 45899999999999999 9 9999999999999998864311 2223322 57889999999763
No 204
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=98.48 E-value=1.7e-07 Score=78.39 Aligned_cols=59 Identities=19% Similarity=0.135 Sum_probs=46.6
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEEC
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRD 420 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~ 420 (578)
..|++|..|.++|||++ | |++||+|++|||++|.+.... .........++++.|+|.|.
T Consensus 30 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~----------~~~~~~~~~~~~v~l~v~R~ 90 (96)
T 2qkv_A 30 EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQ----------VSYALFKGANGKVSMEVTRP 90 (96)
T ss_dssp SSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHH----------HHHHHHHTCSSEEEEEEECC
T ss_pred CCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHH----------HHHHHHhcCCCcEEEEEEeC
Confidence 35899999999999999 9 999999999999999985441 11222234567899999985
No 205
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=98.48 E-value=2.7e-08 Score=86.09 Aligned_cols=63 Identities=21% Similarity=0.319 Sum_probs=49.9
Q ss_pred CCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEEC-CEEEE
Q 008087 352 QKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRD-SKILN 425 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~-g~~~~ 425 (578)
..|++|..|.++|||++ ||++||+|++|||++|.++.+.. +..++.. ++.+.|+|+|+ |+..+
T Consensus 40 ~~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~--------~~~~~~~---~~~v~l~v~r~~g~~~~ 104 (114)
T 1x5n_A 40 KPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKE--------AVNVLKS---SRSLTISIVAAAGRELF 104 (114)
T ss_dssp SCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTH--------HHHHHHH---CSSEEEEECSSTTTHHH
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH--------HHHHHhc---CCeEEEEEEcCCCCceE
Confidence 45899999999999999 99999999999999999987521 2223332 35789999998 76543
No 206
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=98.47 E-value=7.2e-08 Score=81.09 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=48.2
Q ss_pred CcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 354 GVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 354 Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
|++|..|.++|||++ ||++||+|++|||+++.++.... +...+. ..|+.+.|+|.|+|+.
T Consensus 35 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~--------~~~~l~--~~g~~v~l~v~r~~~~ 95 (99)
T 3khf_A 35 HHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMD--------VVELLL--KSGNKISLRTTALENT 95 (99)
T ss_dssp EEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHH--------HHHHHH--HSCSEEEEEEECSCSS
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH--------HHHHHh--cCCCEEEEEEEECCCc
Confidence 678999999999999 99999999999999999543211 334444 4689999999997753
No 207
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=98.47 E-value=6e-07 Score=79.98 Aligned_cols=56 Identities=7% Similarity=-0.009 Sum_probs=48.8
Q ss_pred ceEEEEe----ecCCcCCCCCCCEEEEeCCeecCCHHHHHHHHHhc-CCCeEEEEEecCeEE
Q 008087 492 QMSSLLW----CLRSPLCLNCFNKVLAFNGNPVKNLKSLANMVENC-DDEFLKFDLEYDQVV 548 (578)
Q Consensus 492 ~~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~~~~l~~~l~~~-~~~~v~l~v~R~~~~ 548 (578)
.++++.. ++|+ +||++||+|++|||++|.++.+|.+++... +++.+.|++.|+++.
T Consensus 57 ~g~~V~~V~~~spA~-aGL~~GD~I~~inG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~ 117 (134)
T 2l97_A 57 SGVIVRSVQSNMPAN-GHLEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKITYYRNGKE 117 (134)
T ss_dssp SCEEEEECSTTSGGG-TTSCSSCEEEEETTEECCCHHHHHHHHHHSSTTCEEEEEEEETTEE
T ss_pred CCEEEEEECCCCchH-HCCCCCCEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 4566654 4789 999999999999999999999999999987 688999999998764
No 208
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=98.47 E-value=7.9e-08 Score=80.42 Aligned_cols=52 Identities=6% Similarity=-0.098 Sum_probs=46.5
Q ss_pred EEEeecCCcCCCCCCCEEEEeCCeecCCHHHHHHHHHhcCC-CeEEEEEecCe
Q 008087 495 SLLWCLRSPLCLNCFNKVLAFNGNPVKNLKSLANMVENCDD-EFLKFDLEYDQ 546 (578)
Q Consensus 495 vvs~v~A~~aGl~~GD~I~~VNG~~V~~~~~l~~~l~~~~~-~~v~l~v~R~~ 546 (578)
+..+++|+++||++||+|++|||++|.+|++|...|....+ +.+.|++.|++
T Consensus 9 V~~~spA~~aGl~~GD~I~~ing~~v~~~~d~~~~l~~~~~~~~v~l~v~R~g 61 (95)
T 3id1_A 9 IAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFG 61 (95)
T ss_dssp ECTTSHHHHTTCCTTCEEEEETTEECSSHHHHHHHHHHTTTCSEEEEEEECTT
T ss_pred eCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHHhcCCCcEEEEEEECC
Confidence 44567999999999999999999999999999999987755 78999999886
No 209
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=98.47 E-value=1.7e-07 Score=76.41 Aligned_cols=59 Identities=14% Similarity=0.203 Sum_probs=48.0
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLR 419 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R 419 (578)
.|++|..|.++|||++ | |++||+|++|||+++.++..- .+..++.....|+.+.|+|.|
T Consensus 25 ~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~--------~~~~~l~~~~~g~~v~l~v~R 85 (85)
T 2i04_A 25 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHA--------QVVKIFQSIPIGASVDLELCR 85 (85)
T ss_dssp BCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHH--------HHHHHHHTSCTTCEEEEEEEC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHH--------HHHHHHHhCCCCCeEEEEEEC
Confidence 4799999999999999 9 999999999999999976321 144566655568899998876
No 210
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=98.45 E-value=2.1e-07 Score=79.30 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=49.3
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
..|++|..|.++|||++ | |++||+|++|||+++.+..... +..++ ...|+.+.|+|.|+|+.
T Consensus 37 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~--------~~~~~--~~~g~~v~l~v~R~~~~ 100 (106)
T 3axa_A 37 KLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQER--------AAELM--TRTSSVVTLEVAKQGAI 100 (106)
T ss_dssp SEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHH--------HHHHH--HTCCSEEEEEEECCCSS
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHH--HcCCCeEEEEEEeCCcc
Confidence 45899999999999999 9 9999999999999998754311 12223 23689999999998763
No 211
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=98.45 E-value=4.8e-07 Score=85.72 Aligned_cols=72 Identities=21% Similarity=0.387 Sum_probs=58.2
Q ss_pred CCCcEEEEeCCCCcccCCCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEE---CCEEEEEEE
Q 008087 352 QKGVRIRRVDPTAPESEVLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLR---DSKILNFNI 428 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R---~g~~~~~~v 428 (578)
..|++|..|.++|||++||++||+|++|||++|.+..... ....+ ...++.+.|+|+| +|+..++.+
T Consensus 23 ~~g~~V~~v~~~spA~~gl~~GD~I~~vng~~v~~~~~~~--------~~~~~--~~~~~~v~l~v~r~~~~G~~~~~~v 92 (195)
T 2qbw_A 23 DDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQ--------AVSLL--KTFQNTVELIIVREVGNGAKQEIRV 92 (195)
T ss_dssp CCSEEEEEECTTSTTTTTCCTTCEEEEETTEECTTCCHHH--------HHHHH--HHCCSEEEEEEEEECSSSCEEEEEE
T ss_pred CCCEEEEEECCCChHHhCCCCCCEEEEECCEECCCCCHHH--------HHHHH--HcCCCeEEEEEEEcCCCCCCceeEe
Confidence 4699999999999999999999999999999999875421 11222 2346799999999 999998888
Q ss_pred Eeccc
Q 008087 429 TLATH 433 (578)
Q Consensus 429 ~l~~~ 433 (578)
.+...
T Consensus 93 ~~~~~ 97 (195)
T 2qbw_A 93 RVEKD 97 (195)
T ss_dssp EEECC
T ss_pred Eeecc
Confidence 88643
No 212
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=98.45 E-value=2.3e-07 Score=78.25 Aligned_cols=61 Identities=21% Similarity=0.274 Sum_probs=48.9
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
..|++|..|.++|||++ | |++||+|++|||+++.++.... +..++. ..|+.+.|+|.|+++
T Consensus 36 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~--------~~~~~~--~~g~~v~l~v~R~~~ 98 (101)
T 2jik_A 36 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQD--------AVDLFR--NAGYAVSLRVQHRLE 98 (101)
T ss_dssp BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHH--------HHHHHH--TCCSEEEEEEEEESC
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHH--------HHHHHH--hCCCeEEEEEEeCCC
Confidence 45899999999999999 9 9999999999999999874311 223333 247899999999765
No 213
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=98.45 E-value=1.6e-07 Score=78.53 Aligned_cols=56 Identities=20% Similarity=0.329 Sum_probs=46.7
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCC--CCCccccCcchhHHHHHhccCCCCEEEEEEEEC
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIAND--GTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRD 420 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~--~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~ 420 (578)
.|++|..|.++|||++ ||++||+|++|||+++.++ .+ +..++... ++.+.|+|.|+
T Consensus 37 ~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~----------~~~~l~~~--~~~v~l~v~~~ 95 (96)
T 2ego_A 37 MVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHRE----------IVDIIKAS--GNVLRLETLYG 95 (96)
T ss_dssp EEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHH----------HHHHHHHT--TTEEEEEEECC
T ss_pred CCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHH----------HHHHHHhC--CCeEEEEEEEC
Confidence 4899999999999999 9999999999999999986 33 44555554 56899998874
No 214
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=98.45 E-value=2e-07 Score=79.63 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=46.4
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEEC
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRD 420 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~ 420 (578)
..|++|..|.++|||++ | |++||+|++|||++|.+..+. .........++++.|+|.|.
T Consensus 24 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~----------~~~~~~~~~~~~v~l~v~R~ 84 (106)
T 2la8_A 24 EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQ----------VCYALFKGANGKVSMEVTRP 84 (106)
T ss_dssp SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHH----------HHHHHHHSCBSCEEEEEEEC
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHH----------HHHHHHhCCCCeEEEEEEeC
Confidence 35899999999999999 9 999999999999999885441 11222233567799999985
No 215
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.44 E-value=1.8e-07 Score=79.14 Aligned_cols=62 Identities=24% Similarity=0.446 Sum_probs=49.3
Q ss_pred CCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 352 QKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
..|++|..|.++|||++ ||++||+|++|||++|.++..- .+..++.. .|+.+.|+|.|++..
T Consensus 29 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~--------~~~~~l~~--~g~~v~l~v~r~~~~ 91 (102)
T 2d90_A 29 QKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHD--------GVVEMIRK--GGDQTTLLVLDKEAE 91 (102)
T ss_dssp SSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHH--------HHHHHHHH--STTEEEEEECSTTCC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHH--------HHHHHHHc--CCCEEEEEEEECCCc
Confidence 45899999999999999 9999999999999999986410 03334433 488999999986653
No 216
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.44 E-value=8e-08 Score=84.63 Aligned_cols=58 Identities=17% Similarity=0.266 Sum_probs=50.2
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeC--CCCCCccccCcchhHHHHHhccCCCCEEEEEEEEC
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIA--NDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRD 420 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~--~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~ 420 (578)
.+++|..|.++|||++ | |++||+|++|||++|. ++.+ +..++.....|+.+.|+|.|+
T Consensus 49 ~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d----------~~~~l~~~~~G~~v~l~V~R~ 110 (126)
T 1wif_A 49 PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLRE----------FLKLLQNITIGTVLQIKAYRG 110 (126)
T ss_dssp TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHH----------HHHHHTSCCSSCEEEEEEESS
T ss_pred CcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHH----------HHHHHhcCCCCCEEEEEEEEC
Confidence 4688999999999999 9 9999999999999996 5655 456676666799999999997
No 217
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=98.44 E-value=1.5e-07 Score=78.94 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=46.9
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCC--CCCCccccCcchhHHHHHhccCCCCEEEEEEEEC
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIAN--DGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRD 420 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~--~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~ 420 (578)
.|++|..|.++|||++ | |++||+|++|||++|.+ |.+ +..++... ++.+.|+|.+.
T Consensus 36 ~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~----------~~~~l~~~--~~~v~L~V~~~ 95 (97)
T 2ejy_A 36 QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQ----------LQKAMKET--KGMISLKVIPN 95 (97)
T ss_dssp CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHH----------HHHHHHHC--CEEEEEEEECC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH----------HHHHHHcC--CCeEEEEEEEC
Confidence 5899999999999999 9 99999999999999996 665 45666553 56888888764
No 218
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=98.44 E-value=2.1e-07 Score=77.88 Aligned_cols=61 Identities=11% Similarity=0.192 Sum_probs=49.7
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
.|++|..|.++|||++ | |++||+|++|||+++.++..- .+..++. ..|+.+.|+|.|+|+.
T Consensus 30 ~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~--------~~~~~l~--~~g~~v~l~v~R~~~~ 92 (97)
T 1n7e_A 30 DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLS--------EAIHLLQ--MAGETVTLKIKKQTDA 92 (97)
T ss_dssp SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHH--------HHHHHHH--TCCSEEEEEEECCCCC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHH--------HHHHHHH--cCCCeEEEEEEeCCCC
Confidence 5899999999999999 9 999999999999999876321 0334444 4688999999998764
No 219
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=98.44 E-value=1.9e-07 Score=78.85 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=48.7
Q ss_pred CCcEEEEeCCCCcccC--CCCCCCEEEEECCEEe--CCCCCCccccCcchhHHHHHhccCCCCEEEEEEEEC
Q 008087 353 KGVRIRRVDPTAPESE--VLKPSDIILSFDGIDI--ANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRD 420 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~--GL~~GDiIl~InG~~V--~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~ 420 (578)
.+++|..|.++|||++ ||++||+|++|||++| .++.+ +..++.....|+.++|+|.|.
T Consensus 37 ~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~----------~~~~l~~~~~g~~v~l~v~R~ 98 (101)
T 2yt7_A 37 PTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAA----------CQAAVRETKSQTSVTLSIVHC 98 (101)
T ss_dssp CCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHH----------HHHHHHHTTTSSEEEEEECCC
T ss_pred cCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH----------HHHHHHhCCCCCeEEEEEEeC
Confidence 3799999999999998 5999999999999999 56655 556676655789999999873
No 220
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=98.44 E-value=8.6e-08 Score=81.99 Aligned_cols=62 Identities=15% Similarity=0.356 Sum_probs=50.3
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
..|++|..|.++|||++ | |++||+|++|||++|.++... .+..++.. .|+.+.|+|.|+++.
T Consensus 43 ~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~--------~~~~~l~~--~g~~v~l~v~R~~~~ 106 (108)
T 2jre_A 43 ATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQS--------DVVEVLRN--AGNPVRLLLIRRLPL 106 (108)
T ss_dssp CCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHH--------HHHHHHHH--HCSEEEEEEEECCCC
T ss_pred CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHH--------HHHHHHHc--CCCeEEEEEEeCCcC
Confidence 45899999999999999 9 999999999999999986321 02334433 588999999998864
No 221
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=1.2e-07 Score=78.55 Aligned_cols=67 Identities=21% Similarity=0.283 Sum_probs=53.5
Q ss_pred ccCCcccccccChhhhhhhccccCCCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEe-CCCCCCccccCcchhHHHHH
Q 008087 328 PLLGVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDI-ANDGTVPFRHGERIGFSYLV 404 (578)
Q Consensus 328 ~~lGi~~~~~~~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V-~~~~~v~~~~~~~~~~~~~~ 404 (578)
.+||+.+... ..|++|..|.++|||++ | |++||+|++|||++| .++.+ +..++
T Consensus 18 ~~lG~~i~~~--------------~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v~~~~~~----------~~~~l 73 (91)
T 2e7k_A 18 EHLGVTFRVE--------------GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPRA----------LQELL 73 (91)
T ss_dssp CCCCEEEEES--------------SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCHHH----------HHHHH
T ss_pred CcEeEEEEec--------------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCHHH----------HHHHH
Confidence 5678777641 35899999999999999 7 999999999999999 66655 44556
Q ss_pred hccCCCCEEEEEEEEC
Q 008087 405 SQKYTGDSAAVKVLRD 420 (578)
Q Consensus 405 ~~~~~g~~v~l~V~R~ 420 (578)
.. .++++.|+|.|.
T Consensus 74 ~~--~~~~v~l~v~~~ 87 (91)
T 2e7k_A 74 RN--ASGSVILKILSG 87 (91)
T ss_dssp HT--CCSSBCEEEECC
T ss_pred Hc--CCCeEEEEEEEC
Confidence 54 367889998874
No 222
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=98.42 E-value=2.6e-07 Score=79.64 Aligned_cols=62 Identities=16% Similarity=0.182 Sum_probs=49.3
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
..|++|..|.++|||++ | |++||+|++|||++|.++.... +..++. ..|+.+.|+|.|+++.
T Consensus 48 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~--------~~~~l~--~~g~~v~l~v~R~~~~ 111 (112)
T 2r4h_A 48 NMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSR--------AIELIK--NGGRRVRLFLKRGETS 111 (112)
T ss_dssp TCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHH--------HHHHHH--TTTTEEEEEEECCEEE
T ss_pred CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHH--cCCCeEEEEEEeCCcc
Confidence 35899999999999999 9 9999999999999999874311 222332 2688999999998764
No 223
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=98.42 E-value=3.5e-07 Score=76.20 Aligned_cols=60 Identities=23% Similarity=0.423 Sum_probs=47.9
Q ss_pred CCCcEEEEeCCCCcccCCCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECC
Q 008087 352 QKGVRIRRVDPTAPESEVLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDS 421 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g 421 (578)
..|++|..|.++|||++||++||+|++|||++|.++.... +...+. ..++.+.|+|.|+.
T Consensus 34 ~~gv~V~~V~~~spA~~gL~~GD~I~~vng~~v~~~~~~~--------~~~~~~--~~~~~v~l~v~R~~ 93 (95)
T 1mfg_A 34 DDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQ--------AVSLLK--TFQNTVELIIVREV 93 (95)
T ss_dssp CCCEEEEEECTTSTTTTTCCTTCEEEEETTEECTTCBHHH--------HHHHHH--HCCSEEEEEEEEEC
T ss_pred CCCEEEEEECCCCchhhCCCCCCEEEEECCEEcCCCCHHH--------HHHHhh--cCCCeEEEEEEeCC
Confidence 4589999999999998899999999999999999865421 112222 35889999999864
No 224
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.42 E-value=2.4e-07 Score=81.26 Aligned_cols=62 Identities=15% Similarity=0.268 Sum_probs=50.9
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECC
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDS 421 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g 421 (578)
..|++|..|.++|||++ | |++||+|++|||++|.++... .+..++.....|+.+.|+|.|++
T Consensus 43 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~--------~~~~~l~~~~~g~~v~l~v~R~~ 106 (123)
T 1ueq_A 43 DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHA--------DVVKLFQSVPIGQSVNLVLCRGY 106 (123)
T ss_dssp SCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHH--------HHHHHHHTSCTTCEEEEEEEESC
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHH--------HHHHHHHhCCCCCeEEEEEEeCC
Confidence 35899999999999999 9 999999999999999965321 14456666556899999999986
No 225
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.41 E-value=3.9e-07 Score=74.72 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=44.5
Q ss_pred cCCcCCCCCCCEEEEeCCeecCCHHHHHHHHHhc-CCCeEEEEEecCeEEE
Q 008087 500 LRSPLCLNCFNKVLAFNGNPVKNLKSLANMVENC-DDEFLKFDLEYDQVVV 549 (578)
Q Consensus 500 ~A~~aGl~~GD~I~~VNG~~V~~~~~l~~~l~~~-~~~~v~l~v~R~~~~~ 549 (578)
+|+++||++||+|++|||++|.+|.+|.++++.. +++.+.|++.|+++..
T Consensus 31 ~A~~aGl~~GD~I~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R~g~~~ 81 (87)
T 2i6v_A 31 LFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQQH 81 (87)
T ss_dssp HHHHTTCCTTCEEEEETTEETTCHHHHHHHHHTGGGCSEEEEEEEETTEEE
T ss_pred HHHHCCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 3489999999999999999999999999999876 5778999999987653
No 226
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.41 E-value=1.3e-07 Score=82.87 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=51.8
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCC--CCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIAN--DGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~--~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.+++|..|.++|||++ | |++||+|++|||++|.+ +.+ +..++.....++.+.|+|.|+++
T Consensus 45 ~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~----------~~~~l~~~~~g~~v~l~v~R~~~ 108 (122)
T 1v5q_A 45 SPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEE----------ANQLLRDSSITSKVTLEIEFDVA 108 (122)
T ss_dssp SCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHH----------HHHHHHHHTTTTCEEEEEEEECC
T ss_pred CCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHH----------HHHHHHhCCCCCeEEEEEEECCc
Confidence 4689999999999999 9 99999999999999988 555 55667666568899999999875
No 227
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.41 E-value=1e-07 Score=80.84 Aligned_cols=63 Identities=19% Similarity=0.192 Sum_probs=49.4
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
..+++|..|.++|||++ | |++||+|++|||++|.++..- .+..++.....|+.+.|+|.|++.
T Consensus 33 ~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~--------~~~~~l~~~~~g~~v~l~v~R~~~ 97 (103)
T 1uep_A 33 GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHR--------YVIDLMHHAARNGQVNLTVRRKVL 97 (103)
T ss_dssp TSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHH--------HHHHHHHHHHHHTEEEEEEEEECC
T ss_pred CCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHH--------HHHHHHHhCCCCCcEEEEEEeCCC
Confidence 35899999999999999 9 999999999999999775321 133445443337899999999764
No 228
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=98.41 E-value=7.5e-07 Score=76.72 Aligned_cols=83 Identities=12% Similarity=0.071 Sum_probs=63.5
Q ss_pred eccEEEeeh-HHHHHHhchhhhhhhhhccccccccccccCCCceEEEEe----ecCCcCCCCCCCEEEEeCCeecCCHHH
Q 008087 451 IAGFVFSRC-LYLISVLSMERIMNMKLRSSFWTSSCIQCHNCQMSSLLW----CLRSPLCLNCFNKVLAFNGNPVKNLKS 525 (578)
Q Consensus 451 ~~Gl~~~~~-p~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~~~~ 525 (578)
+.|+.+..+ +.+...++... ..+. ....++++.. ++|+++||++||+|++|||++|.++.+
T Consensus 7 ~lGi~~~~l~~~~~~~~~~~~------------~~~~--~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~ 72 (113)
T 2pzd_A 7 YIGVMMLTLSPSILAELQLRE------------PSFP--DVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAED 72 (113)
T ss_dssp ECCEEEEECCHHHHHHHHHHC------------SSCC--CCSSCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECCSHHH
T ss_pred EeEEEEEeCCHHHHHHhcccc------------cccc--CCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCHHH
Confidence 568999998 88887777311 0000 1134566665 479999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEEecCeEEE
Q 008087 526 LANMVENCDDEFLKFDLEYDQVVV 549 (578)
Q Consensus 526 l~~~l~~~~~~~v~l~v~R~~~~~ 549 (578)
|.++++. ++.+.|++.|+++..
T Consensus 73 ~~~~l~~--~~~v~l~v~R~g~~~ 94 (113)
T 2pzd_A 73 VYEAVRT--QSQLAVQIRRGRETL 94 (113)
T ss_dssp HHHHHHH--CSSEEEEEEETTEEE
T ss_pred HHHHHhC--CCeEEEEEEECCEEE
Confidence 9999987 578999999987643
No 229
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=98.40 E-value=2.8e-07 Score=77.83 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=50.3
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKIL 424 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~ 424 (578)
..|++|..|.++|||++ | |++||+|++|||+++.+..... +...+.. .|+.+.|+|.|+++..
T Consensus 33 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~--------~~~~~~~--~g~~v~l~v~R~~~~~ 97 (102)
T 2i1n_A 33 DPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSR--------AVEALKE--AGPVVRLVVRRRQPPP 97 (102)
T ss_dssp CCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHH--------HHHHHHH--SCSEEEEEEEEECCCC
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHc--CCCeEEEEEEeCCCCC
Confidence 45899999999999999 9 9999999999999998854311 2233333 5899999999987653
No 230
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=98.40 E-value=3e-08 Score=86.22 Aligned_cols=97 Identities=13% Similarity=0.192 Sum_probs=65.1
Q ss_pred chhHHHHHHHHHHcCcee-----c--cccCCcccccccChhhhhhhccccCCCCcEEEEeCCCCcccC-C-CCCCCEEEE
Q 008087 308 TPVIMHFIQDYEKNGAYT-----G--FPLLGVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESE-V-LKPSDIILS 378 (578)
Q Consensus 308 i~~i~~~l~~l~~~g~v~-----~--~~~lGi~~~~~~~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-G-L~~GDiIl~ 378 (578)
.+.....++++.....+. + ...||+.+... ... .....|++|..|.++|||++ | |++||+|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~v~l~k~~~~~lG~~i~~~-~~~-------~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ 76 (117)
T 2o2t_A 5 CDEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVGL-RSE-------NRGELGIFVQEIQEGSVAHRDGRLKETDQILA 76 (117)
T ss_dssp CHHHHHHHHHHHTTSCEEEEEEECCSSSCSSCCEEEE-ECC-------C--CEEEEECCCCTTSHHHHHCCCCTTCEEEE
T ss_pred hHHHHHHHHhhccCCeEEEEEEEECCCCCCCEEEeec-ccC-------CCCCCCEEEEEECCCCHHHHCCCCCCCCEEEE
Confidence 345556666665544331 0 13466666533 100 01135899999999999999 9 999999999
Q ss_pred ECCEEeC---CCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEE
Q 008087 379 FDGIDIA---NDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKIL 424 (578)
Q Consensus 379 InG~~V~---~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~ 424 (578)
|||++|. ++.+ +..++.. .|+.+.|+|.|+++..
T Consensus 77 ing~~v~~~~~~~~----------~~~~l~~--~~~~v~l~v~R~~~~~ 113 (117)
T 2o2t_A 77 INGQALDQTITHQQ----------AISILQK--AKDTVQLVIARGSLPQ 113 (117)
T ss_dssp ETTEECCTTSCHHH----------HHHHHHH--CCSEEEEEEESSCCGG
T ss_pred ECCEECCCCCCHHH----------HHHHHHc--CCCEEEEEEEeCCcce
Confidence 9999998 4433 3344443 5889999999988653
No 231
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.39 E-value=1.7e-07 Score=77.51 Aligned_cols=68 Identities=16% Similarity=0.259 Sum_probs=51.1
Q ss_pred ChhhhhhhccccCCCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeC--CCCCCccccCcchhHHHHHhccCCCCEEEE
Q 008087 339 NPDLRVAMSMKADQKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIA--NDGTVPFRHGERIGFSYLVSQKYTGDSAAV 415 (578)
Q Consensus 339 ~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~--~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l 415 (578)
.++....||+.. ..| +|..|.++|||++ ||++||+|++|||++|. ++.+ +..++.. .|+.+.|
T Consensus 19 ~~~~~~~lG~~~-~~G-~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~----------~~~~l~~--~g~~v~l 84 (90)
T 1y7n_A 19 RPDLRYQLGFSV-QNG-IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEK----------IVHILSN--AVGEIHM 84 (90)
T ss_dssp ESSTTSCCCEEE-ETT-EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHH----------HHHHHHH--CCEEEEE
T ss_pred eCCCccccCeEe-cCC-EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH----------HHHHHHc--CCCeEEE
Confidence 344455566644 236 8999999999999 99999999999999995 4544 4455553 4788899
Q ss_pred EEEEC
Q 008087 416 KVLRD 420 (578)
Q Consensus 416 ~V~R~ 420 (578)
+|++.
T Consensus 85 ~v~p~ 89 (90)
T 1y7n_A 85 KTMPA 89 (90)
T ss_dssp EEECC
T ss_pred EEEEC
Confidence 88764
No 232
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.39 E-value=1.2e-07 Score=83.88 Aligned_cols=61 Identities=16% Similarity=0.350 Sum_probs=51.4
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCC--CCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIAN--DGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKIL 424 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~--~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~ 424 (578)
..|++|..|.++|||++ | |++||+|++|||++|.+ +.+ +..++.. .++.+.|+|.|+|+..
T Consensus 45 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~----------~~~~l~~--~~~~v~l~v~R~~~~~ 109 (129)
T 2dmz_A 45 ASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHD----------VVEVLRN--AGQVVHLTLVRRKTSS 109 (129)
T ss_dssp CCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHH----------HHHHHHH--CCSSEEEEEEEESSSS
T ss_pred CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH----------HHHHHHc--CCCeEEEEEEeCCccc
Confidence 45899999999999999 9 99999999999999998 433 4455554 6889999999988643
No 233
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=98.39 E-value=2.4e-07 Score=76.49 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=48.4
Q ss_pred EEEeecCCcCCCCCCCEEEEeCCeecCCHHHHHHHHHhcCCCeEEEEEecCeEE
Q 008087 495 SLLWCLRSPLCLNCFNKVLAFNGNPVKNLKSLANMVENCDDEFLKFDLEYDQVV 548 (578)
Q Consensus 495 vvs~v~A~~aGl~~GD~I~~VNG~~V~~~~~l~~~l~~~~~~~v~l~v~R~~~~ 548 (578)
+..+++|+++||+.||+|++|||++|.++.+|.+.+...+++.+.|++.|+++.
T Consensus 11 v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~~~g~~v~l~v~R~g~~ 64 (91)
T 2zpm_A 11 VQPNSAASXAGLQAGDRIVXVDGQPLTQWVTFVMLVRDNPGXSLALEIERQGSP 64 (91)
T ss_dssp ECTTSHHHHTTCCTTCEEEEETTEECCCHHHHHHHHHHCTTCCEEEEEEETTEE
T ss_pred ECCCChHHhcCCCCCCEEEEECCeEcCCHHHHHHHHhcCCCCeEEEEEEECCeE
Confidence 445678999999999999999999999999999999988888999999998764
No 234
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.39 E-value=2.9e-07 Score=78.96 Aligned_cols=67 Identities=21% Similarity=0.258 Sum_probs=51.9
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEEEE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNI 428 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v 428 (578)
..|++|..|.++|||++ | |++||+|++|||++|.+..... +...+ ...++.+.|+|.|+++..++.+
T Consensus 35 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~--------~~~~~--~~~~~~v~l~v~R~~~~~~~~v 103 (110)
T 1um1_A 35 APGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLR--------AVDLI--RHGGKKMRFLVAKSDVETAKKI 103 (110)
T ss_dssp CSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHH--------HHHHH--HTCCSEEEEEEECCCHHHHHHH
T ss_pred CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHH--HcCCCeEEEEEEeCCcceeEEE
Confidence 45899999999999999 9 9999999999999998754311 12222 2358899999999987654433
No 235
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=98.38 E-value=2.8e-07 Score=76.69 Aligned_cols=59 Identities=22% Similarity=0.419 Sum_probs=47.4
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCC--CCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIAND--GTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~--~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
.|++|..|.++|||++ ||++||+|++|||+++.++ .+ +..++.. .++.+.+.+.|.+..
T Consensus 29 ~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~----------~~~~l~~--~~~~~~~~~~r~~~~ 90 (95)
T 3r68_A 29 KGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDG----------VVEMIRK--GGDQTTLLVLDKELE 90 (95)
T ss_dssp CSEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHH----------HHHHHHT--TTTEEEEEEEECC--
T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHH----------HHHHHHh--CCCeEEEEEECCccc
Confidence 4899999999999999 9999999999999999998 34 3345544 567788888876543
No 236
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.38 E-value=5e-07 Score=75.59 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=47.2
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.|++|..|.+. |++ ||++||+|++|||++|.++..- .+..++.....|+.+.|+|.|+|+
T Consensus 32 ~Gv~V~~v~~~--a~~aGL~~GD~I~~vng~~v~~~~~~--------~~~~~l~~~~~g~~v~l~v~R~g~ 92 (96)
T 1ujv_A 32 TGQRVKQILDI--QGCPGLCEGDLIVEINQQNVQNLSHT--------EVVDILKDCPIGSETSLIIHRGSG 92 (96)
T ss_dssp TEEEEEEESCG--GGSTTCCSSCEEEEETTEECSSCCHH--------HHHHHHHHSCTTSEEEEEEECCSS
T ss_pred CCEEEEEEecc--cccCCCCCCCEEEEECCEECCCCCHH--------HHHHHHHcCCCCCEEEEEEEECCC
Confidence 37999999883 566 9999999999999999886321 144566665568999999999875
No 237
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=98.38 E-value=4.9e-07 Score=75.42 Aligned_cols=61 Identities=13% Similarity=0.271 Sum_probs=48.7
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
..|++|..|.++|||++ | |++||+|++|||+++.++.... +..++.. .|+.+.|+|.|++.
T Consensus 32 ~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~--------~~~~l~~--~g~~v~l~v~R~~~ 94 (96)
T 1d5g_A 32 HGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQ--------AVETLRN--TGQVVHLLLEKGQS 94 (96)
T ss_dssp SSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHH--------HHHHHHS--CCSEEEEEEECCSC
T ss_pred cCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHc--CCCeEEEEEEcCCC
Confidence 35899999999999999 9 9999999999999999763211 2233333 68899999999764
No 238
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=98.38 E-value=3.1e-07 Score=77.82 Aligned_cols=60 Identities=22% Similarity=0.333 Sum_probs=48.2
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.|++|..|.++|||++ | |++||+|++|||+++.++.... +...+ ...++.+.|+|.|+++
T Consensus 35 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~--------~~~~~--~~~~~~v~l~v~r~~~ 96 (104)
T 3i4w_A 35 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ--------AAIAL--KNAGQTVTIIAQYKPE 96 (104)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHH--------HHHHH--HTSCSEEEEEEEECHH
T ss_pred CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHH--------HHHHH--HcCCCeEEEEEEECcc
Confidence 4899999999999999 9 9999999999999998876521 11222 3367899999999754
No 239
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=98.37 E-value=2.4e-07 Score=76.77 Aligned_cols=53 Identities=8% Similarity=0.132 Sum_probs=47.3
Q ss_pred EEEeecCCcCCCCCCCEEEEeCCeecCCHHHHHHHHHhc-CCCeEEEEEecCeEE
Q 008087 495 SLLWCLRSPLCLNCFNKVLAFNGNPVKNLKSLANMVENC-DDEFLKFDLEYDQVV 548 (578)
Q Consensus 495 vvs~v~A~~aGl~~GD~I~~VNG~~V~~~~~l~~~l~~~-~~~~v~l~v~R~~~~ 548 (578)
+..+++|++ ||++||+|++|||++|.++.+|.++++.. +++.+.|++.|+++.
T Consensus 8 V~~~spA~~-GL~~GD~I~~InG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~ 61 (91)
T 2kjp_A 8 VVENMPAKG-KIEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTLKIEREEKE 61 (91)
T ss_dssp CCCSSCCSS-CCCSSCEEEEETTBCCSSHHHHHHHHSSCCSSCEECEEEESSSCE
T ss_pred ECCCChHHH-cCCCCCEEEEECCEECCCHHHHHHHHHcCCCCCEEEEEEEECCEE
Confidence 345678998 99999999999999999999999999987 688999999998754
No 240
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.37 E-value=1.9e-07 Score=80.62 Aligned_cols=59 Identities=20% Similarity=0.261 Sum_probs=48.5
Q ss_pred CCcEEEEeCCCCcccC-CC-CCCCEEEEECCEEeCCCC--CCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 353 KGVRIRRVDPTAPESE-VL-KPSDIILSFDGIDIANDG--TVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL-~~GDiIl~InG~~V~~~~--~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
.|++|..|.++|||++ || ++||+|++|||++|.++. + +..++.. .++++.|+|.|+++.
T Consensus 48 ~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~----------~~~~l~~--~~~~v~l~v~r~~~~ 110 (113)
T 1va8_A 48 DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNE----------VFDLLSD--MHGTLTFVLIPSSGP 110 (113)
T ss_dssp SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHH----------HHHHHHH--CCEEEEEEEECCCCC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH----------HHHHHHc--CCCeEEEEEEECCcc
Confidence 5899999999999999 99 999999999999999653 3 3345543 346899999998764
No 241
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.37 E-value=2.6e-07 Score=78.32 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=49.5
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
..+++|..|.++|||++ | |++||+|++|||++|.++.... +..++.. .|+.+.|+|.|+|+.
T Consensus 37 ~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~--------~~~~~~~--~g~~v~l~v~R~g~~ 100 (104)
T 2djt_A 37 DTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQ--------AVERIRA--GGPQLHLVIRRPLSG 100 (104)
T ss_dssp ECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHH--------HHHHHHH--TCSEEEEEECCCCCC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHc--CCCeEEEEEEECCCC
Confidence 35899999999999999 9 9999999999999999874211 2233333 588999999998753
No 242
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.36 E-value=4.7e-07 Score=77.34 Aligned_cols=62 Identities=13% Similarity=0.252 Sum_probs=49.7
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
..|++|..|.++|||++ | |++||+|++|||+++.+..... +..++.. .|+.+.|+|.|+++.
T Consensus 41 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~--------~~~~~~~--~g~~v~l~v~R~~~~ 104 (108)
T 1q7x_A 41 HGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQ--------AVETLRN--TGQVVHLLLEKGQSP 104 (108)
T ss_dssp SCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSH--------HHHHHHH--TTSEEEEEEECCCCS
T ss_pred CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHc--CCCeEEEEEEeCCcc
Confidence 45899999999999999 9 9999999999999999543321 2334433 589999999998764
No 243
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=98.36 E-value=2.3e-07 Score=75.23 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=46.0
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEEC
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRD 420 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~ 420 (578)
.|++|..|.++|||++ ||++||+|++|||+++.++.... +..++.. .++.+.|+|.|+
T Consensus 23 ~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~--------~~~~l~~--~~~~v~l~v~R~ 81 (83)
T 2kv8_A 23 APCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHED--------VVKLIGK--CSGVLHMVIAEG 81 (83)
T ss_dssp SSCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHH--------HHHHHTT--CSSCEEEEEECC
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHH--------HHHHHHh--CCCeEEEEEEcC
Confidence 4789999999999999 99999999999999999984210 2334432 457799999886
No 244
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=98.36 E-value=2.9e-07 Score=80.03 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=47.9
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
.|++|..|.++|||++ | |++||+|++|||++|.+..... +..++.. .++++.|+|.|+|+.
T Consensus 53 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~--------~~~~l~~--~~~~v~l~v~R~g~~ 115 (117)
T 2fne_A 53 LPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEE--------AVAILKR--TKGTVTLMVLSSDET 115 (117)
T ss_dssp EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHH--------HHHHHHH--CCSSEEEEEEECSCE
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHc--CCCeEEEEEEeCCcc
Confidence 4899999999999999 8 9999999999999999543210 2233433 456799999998875
No 245
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=98.35 E-value=1.9e-07 Score=76.95 Aligned_cols=61 Identities=16% Similarity=0.233 Sum_probs=47.1
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECC
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDS 421 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g 421 (578)
.+++|..|.++|||++ | |++||+|++|||+++.+..... +..++.....++.+.|+|.|.+
T Consensus 27 ~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~--------~~~~l~~~~~~~~v~l~v~R~~ 89 (90)
T 2q9v_A 27 EPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQL--------VVQLMQQAAKQGHVNLTVRQTR 89 (90)
T ss_dssp SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHH--------HHHHHHHHHHHTEEEEEEEECC
T ss_pred CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHhCCCCCeEEEEEEecc
Confidence 4799999999999999 9 9999999999999996543211 3344544434558999999864
No 246
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=98.35 E-value=4.2e-07 Score=79.12 Aligned_cols=60 Identities=22% Similarity=0.338 Sum_probs=49.3
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.|++|..|.++|||++ | |++||+|++|||++|.++.+. .........++.+.|+|.|++.
T Consensus 38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~----------~~~~~~~~~~~~v~l~v~r~~~ 99 (119)
T 1tp5_A 38 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHE----------QAAIALKNAGQTVTIIAQYKPE 99 (119)
T ss_dssp CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHH----------HHHHHHHTSCSEEEEEEEECHH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHH----------HHHHHHHcCCCeEEEEEEECCc
Confidence 5899999999999999 9 999999999999999998652 2222223468899999998753
No 247
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=98.35 E-value=1.3e-06 Score=73.61 Aligned_cols=57 Identities=9% Similarity=0.109 Sum_probs=48.3
Q ss_pred ceEEEEee----cCCcCCCCCCCEEEEeCCeecCCHHHHHHHHHhc-CCCeEEEEEecCeEEE
Q 008087 492 QMSSLLWC----LRSPLCLNCFNKVLAFNGNPVKNLKSLANMVENC-DDEFLKFDLEYDQVVV 549 (578)
Q Consensus 492 ~~vvvs~v----~A~~aGl~~GD~I~~VNG~~V~~~~~l~~~l~~~-~~~~v~l~v~R~~~~~ 549 (578)
.++++..+ +|+. ||++||+|++|||++|.++.+|.+++... +++.+.|++.|+++..
T Consensus 7 ~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~v~~~~dl~~~l~~~~~g~~v~l~v~R~g~~~ 68 (100)
T 3i18_A 7 DGVYVMSVKDDVPAAD-VLHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKINYKHGDKNE 68 (100)
T ss_dssp CCEEEEEECTTSGGGG-TCCTTCEEEEETTBCCSSHHHHHHHHHTSCTTCEEEEEEEETTEEE
T ss_pred CCEEEEEeCCCCchHH-CCCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence 46666654 6775 99999999999999999999999999985 5789999999987653
No 248
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=98.35 E-value=8.7e-07 Score=76.24 Aligned_cols=82 Identities=11% Similarity=0.044 Sum_probs=62.0
Q ss_pred eccEEEeeh-HHHHHHhchhhhhhhhhccccccccccccCCCceEEEEee----cCCcCCCCCCCEEEEeCCeecCCHHH
Q 008087 451 IAGFVFSRC-LYLISVLSMERIMNMKLRSSFWTSSCIQCHNCQMSSLLWC----LRSPLCLNCFNKVLAFNGNPVKNLKS 525 (578)
Q Consensus 451 ~~Gl~~~~~-p~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~vvvs~v----~A~~aGl~~GD~I~~VNG~~V~~~~~ 525 (578)
+.|+.+.++ +.++..++... ..+ .....++++..+ +|+++||++||+|++|||++|.++.+
T Consensus 7 ~lGi~~~~l~~~~~~~~~~~~------------~~~--~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~ 72 (112)
T 2p3w_A 7 FIGIRMRTITPSLVDELKASN------------PDF--PEVSSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSE 72 (112)
T ss_dssp ECCEEEEECCHHHHHHHHHHC------------TTC----CCSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHH
T ss_pred eeeEEEecCCHHHHHHhcccC------------cCc--ccCCCCeEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHH
Confidence 579999999 88887777311 000 011245666654 78899999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEEecCeEE
Q 008087 526 LANMVENCDDEFLKFDLEYDQVV 548 (578)
Q Consensus 526 l~~~l~~~~~~~v~l~v~R~~~~ 548 (578)
|.+++. .++.+.|++.|+++.
T Consensus 73 ~~~~l~--~g~~v~l~v~R~g~~ 93 (112)
T 2p3w_A 73 LQEAVL--TESPLLLEVRRGNDD 93 (112)
T ss_dssp HHHHHH--HCSSEEEEEEETTEE
T ss_pred HHHHHh--CCCeEEEEEEECCEE
Confidence 999995 367899999998754
No 249
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=98.35 E-value=1.6e-07 Score=82.80 Aligned_cols=63 Identities=22% Similarity=0.377 Sum_probs=52.9
Q ss_pred CCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCC--CCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEE
Q 008087 352 QKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIAN--DGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILN 425 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~--~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~ 425 (578)
..|++|..|.++|||++ ||++||+|++|||+++.+ +.+ +..++... .++.+.++|.|+|+..+
T Consensus 32 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~----------~~~~l~~~-~~~~~~l~v~R~g~~~~ 97 (128)
T 2kjd_A 32 KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGD----------VVSAIRAG-GDETKLLVVDRETDEFF 97 (128)
T ss_dssp SCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHH----------HHHHHHTT-CSEEEEEEECHHHHHHH
T ss_pred CCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHH----------HHHHHHhC-CCCEEEEEEEeCCcceE
Confidence 35899999999999999 999999999999999998 544 44566554 67888899999887655
No 250
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=98.35 E-value=7.2e-07 Score=74.34 Aligned_cols=56 Identities=11% Similarity=0.186 Sum_probs=48.0
Q ss_pred ceEEEEe----ecCCcCCCCCCCEEEEeCCeecCCHHHHHHHHHhc-CCCeEEEEEecCeEE
Q 008087 492 QMSSLLW----CLRSPLCLNCFNKVLAFNGNPVKNLKSLANMVENC-DDEFLKFDLEYDQVV 548 (578)
Q Consensus 492 ~~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~~~~l~~~l~~~-~~~~v~l~v~R~~~~ 548 (578)
.++++.. ++|++ ||++||+|++|||++|.++.+|.++++.. +++.+.|++.|+++.
T Consensus 5 ~Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~ 65 (94)
T 2kl1_A 5 KGVYVMSVLPNMPAAG-RLEAGDRIAAIDGQPINTSEQIVSYVREKQAGDRVRVTFIRDRKQ 65 (94)
T ss_dssp CCEECCCCCTTSTTBT-TBCTTCEEEEETTBCCCCHHHHHHHHHHSCTTCCEEEEEEETTEE
T ss_pred CcEEEEEECCCChHHh-CCCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 3455544 47888 99999999999999999999999999987 688999999998764
No 251
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=98.34 E-value=5.9e-07 Score=78.06 Aligned_cols=61 Identities=10% Similarity=0.137 Sum_probs=48.5
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
..|++|..|.++|||++ | |++||+|++|||++|.+..... +..++. ..|+.+.|+|.|+++
T Consensus 53 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~--------~~~~l~--~~g~~v~l~v~R~~~ 115 (117)
T 2byg_A 53 DNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEE--------AVAILK--NTSEVVYLKVGKPTT 115 (117)
T ss_dssp BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHH--------HHHHHH--TCCSEEEEEEEEEEE
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHH--cCCCeEEEEEEeCCc
Confidence 45899999999999999 9 9999999999999999543211 223343 347899999999765
No 252
>3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral protein, hydrolase; 1.70A {Tobacco vein mottling virus} SCOP: b.47.1.0
Probab=98.33 E-value=1.9e-05 Score=75.87 Aligned_cols=169 Identities=18% Similarity=0.266 Sum_probs=103.4
Q ss_pred ccCCCCcEEEEeeeeCCCCCCccccCCCcceEEEEEEEc-CCEEEecccccCCC-ceEEEEEcCCCcEEEEE-----EEE
Q 008087 119 VPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFAIG-GRRVLTNAHSVEHY-TQVKLKKRGSDTKYLAT-----VLA 191 (578)
Q Consensus 119 ~~~~~sVV~I~~~~~~~~~~~p~~~~~~~~~~GsGfvI~-~g~ILT~aHvV~~~-~~i~V~~~~~g~~~~a~-----vv~ 191 (578)
.++...|+++..... . ...+-+-|. ..||+||+|..... ..++|+.. .|. |... -+.
T Consensus 12 n~ia~~iC~l~n~sd------------g--~~~~l~gigyG~~iItn~HLf~rnng~L~I~s~-hG~-f~v~nt~~lki~ 75 (241)
T 3mmg_A 12 NPISACVCLLENSSD------------G--HSERLFGIGFGPYIIANQHLFRRNNGELTIKTM-HGE-FAVANSTQLQMK 75 (241)
T ss_dssp HHHHTTEEEEEEEET------------T--EEEEEEEEEETTEEEECGGGGSSTTCEEEEEET-TEE-EEEEEGGGSCEE
T ss_pred ChhhheEEEEEEEeC------------C--CEEEEEEEeECCEEEEChhhcccCCCeEEEEEC-Cce-EEccCCCceeeE
Confidence 444557777776541 1 123334444 67999999998855 45888873 343 3222 255
Q ss_pred EcCCCCEEEEEEeeCCCCCCeeeEEcC---CCCCCCCcEEEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEEec
Q 008087 192 IGTECDIAMLTVEDDEFWEGVLPVEFG---ELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDA 268 (578)
Q Consensus 192 ~d~~~DlAlLkv~~~~~~~~~~~l~l~---~~~~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~da 268 (578)
.-...||.++|+..+ ++|.+-. ..+..++.|.++|..+..... .-.||.........+. .+-..-.
T Consensus 76 ~i~g~DiiiIrmPkD-----fpPf~~kl~FR~P~~~E~V~lVg~~fq~k~~---~s~vSesS~i~p~~~~---~fWkHwI 144 (241)
T 3mmg_A 76 PVEGRDIIVIKMAKD-----FPPFPQKLKFRQPTIKDRVCMVSTNFQQKSV---SSLVSESSHIVHKEDT---SFWQHWI 144 (241)
T ss_dssp ECTBSSCEEEECCTT-----SCCCCSCCCBCCCCTTCCEEEEEEEECSSCE---EEEEEEEECCEECTTS---SEEEECB
T ss_pred EeCCccEEEEeCCCC-----CCCcchhcccCCCCCCCeEEEEEeecccCCc---cEEECCcceeEEcCCC---CEEEEEc
Confidence 667899999999764 4443222 256789999999987664331 2223333221111111 2344555
Q ss_pred CCCCCCccceEEcc-CCeEEEEEeccccccccCCceeeecch--hHHHHHHH
Q 008087 269 AINSGNSGGPAFND-KGKCVGIAFQSLKHEDVENIGYVIPTP--VIMHFIQD 317 (578)
Q Consensus 269 ~i~~G~SGGPlvn~-~G~vVGI~~~~~~~~~~~~~~~aiPi~--~i~~~l~~ 317 (578)
.+..|+-|+|+++. ||.+|||++... .....+|+.|+. .+..+|+.
T Consensus 145 sT~~G~CGlPlVs~~Dg~IVGiHsl~~---~~~~~N~F~~f~~~f~~~~L~~ 193 (241)
T 3mmg_A 145 TTKDGQAGSPLVSIIDGNILGIHSLTH---TTNGSNYFVEFPEKFVATYLDA 193 (241)
T ss_dssp CCCTTCTTCEEEETTTCCEEEEEEEEE---TTTCCEEEEECCTTHHHHHTTC
T ss_pred CCCCCcCCCeEEEcCCCcEEEEEeccc---CCCCcEEEEcCCHHHHHHHhhC
Confidence 66789999999987 899999998854 334467777664 33334433
No 253
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=98.33 E-value=4.1e-07 Score=80.78 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=50.8
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.|++|..|.++|||++ | |++||+|++|||+++.+...- .+..++.....++.+.|+|.|++.
T Consensus 65 ~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~--------~~~~~l~~~~~g~~v~l~v~R~g~ 128 (131)
T 1wfg_A 65 LCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFE--------EVYNIILESKPEPQVELVVSRSGP 128 (131)
T ss_dssp EEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHH--------HHHHHHHHTSSSSEEEEEEEEECS
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHH--------HHHHHHHhcCCCCEEEEEEEcCCC
Confidence 4899999999999999 9 999999999999999875321 144566666578999999999763
No 254
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=98.33 E-value=3.3e-07 Score=75.35 Aligned_cols=58 Identities=17% Similarity=0.250 Sum_probs=47.7
Q ss_pred CCcEEEEeCCCCcccC--CCCCCCEEEEECCEEeC--CCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE--VLKPSDIILSFDGIDIA--NDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~--GL~~GDiIl~InG~~V~--~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.+++|..|.++|||++ ||++||+|++|||+++. +|.+ +..++... .+ .+.|+|.|.++
T Consensus 25 ~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~----------~~~~l~~~-~~-~v~l~v~r~~~ 86 (88)
T 1kwa_A 25 NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQ----------LQKMLREM-RG-SITFKIVPSYR 86 (88)
T ss_dssp GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHH----------HHHHHHHC-CE-EEEEEEECCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH----------HHHHHhcC-CC-cEEEEEECCcC
Confidence 3799999999999998 69999999999999999 6555 44566554 34 89999998764
No 255
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=98.32 E-value=1.4e-07 Score=82.41 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=49.2
Q ss_pred CCcEEEEeCCCCcccC--CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEE
Q 008087 353 KGVRIRRVDPTAPESE--VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILN 425 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~--GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~ 425 (578)
.|++|..|.++|||++ ||++||+|++|||+++.++.... +..++.. .++++.|+|+|+|+..+
T Consensus 53 ~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~--------~~~~l~~--~~~~v~l~v~r~g~~~~ 117 (120)
T 2iwo_A 53 VPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQ--------AVNLLKN--ASGSIEMQVVAGGDVSE 117 (120)
T ss_dssp EEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHH--------HHHHHHH--CCSEEEEEEECCTTSSS
T ss_pred CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHc--CCCeEEEEEEECCccce
Confidence 4799999999999986 89999999999999999874311 2223333 47789999999886543
No 256
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=98.31 E-value=7.5e-07 Score=72.87 Aligned_cols=54 Identities=11% Similarity=0.035 Sum_probs=47.5
Q ss_pred eEEEEe----ecCCcCCCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPLCLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
++++.. ++|+++||++||+|++|||++|.+ +.++.++++..+ +.+.|++.|++.
T Consensus 27 g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~~ 86 (87)
T 2pa1_A 27 PIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLDRITS 86 (87)
T ss_dssp EEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCC-SSEEEEEEECCC
T ss_pred CEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEecCC
Confidence 455554 589999999999999999999998 899999999887 889999999864
No 257
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=98.31 E-value=1.9e-07 Score=78.30 Aligned_cols=57 Identities=14% Similarity=0.076 Sum_probs=47.0
Q ss_pred CCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeC--CCCCCccccCcchhHHHHHhcc-CCCCEEEEEEE
Q 008087 352 QKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIA--NDGTVPFRHGERIGFSYLVSQK-YTGDSAAVKVL 418 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~--~~~~v~~~~~~~~~~~~~~~~~-~~g~~v~l~V~ 418 (578)
..+.+|..|.++|||++ ||++||+|++|||++|. +|.+ +...+... ..|+.+.|.|.
T Consensus 38 ~~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~d----------v~~~i~~~~~~g~~v~LLV~ 98 (101)
T 3qik_A 38 NKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSE----------VESILNQSFCSRRPLRLLVA 98 (101)
T ss_dssp TTEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHH----------HHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHH----------HHHHHHHhhccCCeEEEEEe
Confidence 45789999999999999 99999999999999985 8877 45566553 46888888764
No 258
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=98.31 E-value=6.6e-07 Score=76.59 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=46.7
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCC--CCCccccCcchhHHHHHhccCCCCEEEEEEEEC
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIAND--GTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRD 420 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~--~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~ 420 (578)
.|++|..|.++|||++ ||++||+|++|||++|.++ .+ +..++.. .++.+.|+|.|.
T Consensus 45 ~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~----------~~~~l~~--~~~~v~l~v~~~ 103 (109)
T 1q3o_A 45 ALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQ----------VVNMIRQ--GGNTLMVKVVMV 103 (109)
T ss_dssp SSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHH----------HHHHHHH--TTTEEEEEEEEE
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH----------HHHHHHh--CCCEEEEEEEEC
Confidence 4899999999999999 9999999999999999998 33 3344443 378899998874
No 259
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.31 E-value=4.1e-07 Score=77.32 Aligned_cols=61 Identities=18% Similarity=0.314 Sum_probs=48.1
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
..|++|..|.++|||++ | |++||+|++|||++|.++.... +..++.. .++.+.|+|.|++.
T Consensus 37 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~--------~~~~l~~--~g~~v~l~v~R~~~ 99 (105)
T 1wha_A 37 DAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDH--------AVSLLTA--ASPTIALLLEREAG 99 (105)
T ss_dssp CCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHH--------HHHHHTS--CCSCEEEEEEECCC
T ss_pred CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHc--CCCeEEEEEEECCC
Confidence 35899999999999999 9 9999999999999998853210 2233332 37889999999753
No 260
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.30 E-value=5.9e-07 Score=77.93 Aligned_cols=61 Identities=26% Similarity=0.351 Sum_probs=47.7
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
..|++|..|.++|||++ | |++||+|++|||++|.+..... +..++. ..++.+.|+|.|.+.
T Consensus 49 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~--------~~~~~~--~~g~~v~l~v~r~~~ 111 (117)
T 2ehr_A 49 LKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSE--------AVEAIK--NAGNPVVFIVQSLSS 111 (117)
T ss_dssp CCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHH--------HHHHHH--TSCSSEEEEECCBSC
T ss_pred cCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHH--cCCCeEEEEEEECCC
Confidence 35899999999999999 9 9999999999999998865311 122332 357889999987543
No 261
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.30 E-value=6.2e-07 Score=76.97 Aligned_cols=61 Identities=23% Similarity=0.345 Sum_probs=48.9
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
.|++|..|.++|||++ | |++||+|++|||++|.++.... +..++.. .|+.+.|+|.|++..
T Consensus 38 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~--------~~~~l~~--~g~~v~l~v~R~~~~ 100 (111)
T 2dlu_A 38 SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQ--------VAQVLRN--CGNSVRMLVARDPAG 100 (111)
T ss_dssp SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHH--------HHHHHHH--HCSEEEEEEEESCTT
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHh--CCCeEEEEEEeCCCC
Confidence 5899999999999999 9 9999999999999999763211 3344443 478999999997653
No 262
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B
Probab=98.29 E-value=4.3e-06 Score=75.92 Aligned_cols=125 Identities=15% Similarity=0.138 Sum_probs=76.0
Q ss_pred CCCCEEEEEEeeC-CCCCCeeeEEcCCC-CCCCCcEEEEeecCCCC----------cceEEEeEEeceeeeeecCCceee
Q 008087 194 TECDIAMLTVEDD-EFWEGVLPVEFGEL-PALQDAVTVVGYPIGGD----------TISVTSGVVSRIEILSYVHGSTEL 261 (578)
Q Consensus 194 ~~~DlAlLkv~~~-~~~~~~~~l~l~~~-~~~g~~V~~iG~p~g~~----------~~sv~~G~Is~~~~~~~~~~~~~~ 261 (578)
..+|||||+++.+ .+...+.|+.|... ...|+.+++.||..... ...+..-+++...+..........
T Consensus 6 ~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~~~~~ 85 (152)
T 2pka_B 6 YSHDLMLLRLQSPAKITDAVKVLELPTQEPELGSTCEASGWGSIEPGPDDFEFPDEIQCVQLTLLQNTFCADAHPDKVTE 85 (152)
T ss_dssp CTTCCEEEEESSCCCCCSSCCCCCCCSSCCCTTCEEEEEESSCSSCCSSCCCCCSBCEEEEEEEECHHHHHHHCSSBCCT
T ss_pred CCCCEEEEEECCCCcCCCCEEeEECCCCCCCCCCEEEEEecccccCCCCcCCCCccceEEEeEEcCHHHhhhhhcCCCCC
Confidence 4689999999986 34456888888753 34588999999864211 112333444433332211111112
Q ss_pred eEEEEe-----cCCCCCCccceEEccCCeEEEEEecc-ccccccCCceeeecchhHHHHHHHHH
Q 008087 262 LGLQID-----AAINSGNSGGPAFNDKGKCVGIAFQS-LKHEDVENIGYVIPTPVIMHFIQDYE 319 (578)
Q Consensus 262 ~~i~~d-----a~i~~G~SGGPlvn~~G~vVGI~~~~-~~~~~~~~~~~aiPi~~i~~~l~~l~ 319 (578)
.+|+.. ...|.|+|||||+.. |+++||++.. ..-......+...-+...+.++++..
T Consensus 86 ~~iCa~~~~~~~~~C~GDsGgPL~~~-g~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~ 148 (152)
T 2pka_B 86 SMLCAGYLPGGKDTCMGDSGGPLICN-GMWQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTI 148 (152)
T ss_dssp TEEEEECTTSSCBCCTTCTTCEEEET-TEEEEEECCCCSSTTCTTCCEEEEEGGGGHHHHHHHH
T ss_pred CEEeeccCCCCCcccCCccccceEEC-CEEEEEEecCCCCCCCCCCCeEEEEHHHHHHHHHHHh
Confidence 345553 357899999999984 8999999875 22111123456677777777776654
No 263
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=98.29 E-value=1e-06 Score=91.24 Aligned_cols=80 Identities=9% Similarity=0.093 Sum_probs=64.9
Q ss_pred eccEEEeeh-HHHHHHhchhhhhhhhhccccccccccccCCCceEEEEe----ecCCcCCCCCCCEEEEeCCeecCCHHH
Q 008087 451 IAGFVFSRC-LYLISVLSMERIMNMKLRSSFWTSSCIQCHNCQMSSLLW----CLRSPLCLNCFNKVLAFNGNPVKNLKS 525 (578)
Q Consensus 451 ~~Gl~~~~~-p~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~~~~ 525 (578)
+.|+.++++ +.+...++.+ ...++++.+ ++|+++||++||+|++|||++|.++.+
T Consensus 241 ~lGv~~~~~~~~~a~~~gl~--------------------~~~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~~~~~ 300 (345)
T 3stj_A 241 LLGIKGTEMSADIAKAFNLD--------------------VQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAE 300 (345)
T ss_dssp ECCEEEEECCHHHHHHTTCS--------------------CCSSEEEEEECTTSHHHHHTCCTTCEECEETTEECSCHHH
T ss_pred ccceeeEeecHHHHHhcCCC--------------------CCceEEEEEeccCChHHHcCCCCCCEEEEECCEECCCHHH
Confidence 678888877 7777777621 124566665 489999999999999999999999999
Q ss_pred HHHHHHhc-CCCeEEEEEecCeEEEE
Q 008087 526 LANMVENC-DDEFLKFDLEYDQVVVL 550 (578)
Q Consensus 526 l~~~l~~~-~~~~v~l~v~R~~~~~l 550 (578)
|.++|... +++.+.|++.|+++..-
T Consensus 301 l~~~l~~~~~g~~v~l~v~R~g~~~~ 326 (345)
T 3stj_A 301 LRSRIATTEPGTKVKLGLLRNGKPLE 326 (345)
T ss_dssp HHHHHHTSCTTCEEEEEEEETTEEEE
T ss_pred HHHHHHhcCCCCEEEEEEEECCEEEE
Confidence 99999875 68899999999977543
No 264
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=98.29 E-value=3.6e-07 Score=78.73 Aligned_cols=65 Identities=11% Similarity=0.150 Sum_probs=51.2
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNF 426 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~ 426 (578)
..|++|..|.++|||++ | |++||+|++|||+++.++.... +..++.. .|+.+.|+|.|+++..++
T Consensus 34 ~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~--------~~~~~~~--~g~~v~l~v~R~~~~~~~ 100 (113)
T 2g5m_B 34 KLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSF--------AASVLRN--TKGRVRFMIGRERPGEQS 100 (113)
T ss_dssp CEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHH--------HHHHHHH--SCSSCEEEEEECCCCTTS
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHhc--CCCeEEEEEEeCCCCCcc
Confidence 45899999999999999 9 9999999999999998765411 2223333 488999999999875443
No 265
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=98.28 E-value=4.9e-07 Score=80.01 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=50.8
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.|++|..|.++|||++ | |++||+|++|||++|.++... .+..++.....|+.+.|+|.|++.
T Consensus 43 ~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~--------~~~~~l~~~~~g~~v~l~v~R~~~ 106 (129)
T 2kpk_A 43 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHA--------QVVKIFQSIPIGASVDLELCRGYP 106 (129)
T ss_dssp EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHH--------HHHHHHHHSCTTEEEEEEEEECSC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHH--------HHHHHHHhCCCCCeEEEEEEeCCC
Confidence 3799999999999999 9 999999999999999975421 144566666568899999999763
No 266
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=98.28 E-value=6.8e-07 Score=75.66 Aligned_cols=60 Identities=23% Similarity=0.423 Sum_probs=47.8
Q ss_pred CCCcEEEEeCCCCcccCCCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECC
Q 008087 352 QKGVRIRRVDPTAPESEVLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDS 421 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g 421 (578)
..|++|..|.++|||++||++||+|++|||+++.+..... +...+. ..++.+.|+|.|+.
T Consensus 42 ~~gv~V~~V~~~spA~~gL~~GD~I~~vng~~v~~~~~~~--------~~~~~~--~~g~~v~l~v~R~~ 101 (103)
T 1n7t_A 42 DDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQ--------AVSLLK--TFQNTVELIIVREV 101 (103)
T ss_dssp CCSEECCCBSSSSTTSSSCCTTCEEEEETTEECSSCCHHH--------HHHHHH--HCCSEEEEEEECCC
T ss_pred CCCEEEEEECCCCchHHCCCCCCEEEEECCEECCCCCHHH--------HHHHhh--cCCCeEEEEEEecC
Confidence 4689999999999998899999999999999998865421 122232 35889999999863
No 267
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=98.28 E-value=6e-07 Score=73.92 Aligned_cols=54 Identities=11% Similarity=0.058 Sum_probs=46.8
Q ss_pred eEEEEe----ecCCcCCCCCCCEEEEeCCeec--CCHHHHHHHHHhc-CCCeEEEEEecCe
Q 008087 493 MSSLLW----CLRSPLCLNCFNKVLAFNGNPV--KNLKSLANMVENC-DDEFLKFDLEYDQ 546 (578)
Q Consensus 493 ~vvvs~----v~A~~aGl~~GD~I~~VNG~~V--~~~~~l~~~l~~~-~~~~v~l~v~R~~ 546 (578)
++++.. ++|+++||++||+|++|||++| .++.+|.++++.. +++.+.|++.|++
T Consensus 29 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 89 (90)
T 2eaq_A 29 GIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYG 89 (90)
T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeCC
Confidence 455554 4899999999999999999999 8999999999874 5788999999876
No 268
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.28 E-value=5.1e-07 Score=78.45 Aligned_cols=61 Identities=20% Similarity=0.283 Sum_probs=48.8
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
.|++|..|.++|||++ | |++||+|++|||+++.++.... +..++.. .++.+.|+|.|+++.
T Consensus 49 ~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~--------~~~~l~~--~~~~v~l~v~R~~~~ 111 (117)
T 1ujd_A 49 IGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEE--------VQSIISQ--QSGEAEICVRLDLNM 111 (117)
T ss_dssp EEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHH--------HHHHHSC--CSSCEEEEEESSCCC
T ss_pred cCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHH--------HHHHHhc--CCCEEEEEEEECCcc
Confidence 4799999999999999 9 9999999999999998754311 2233333 678899999998764
No 269
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=5.6e-07 Score=78.48 Aligned_cols=62 Identities=21% Similarity=0.299 Sum_probs=49.6
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
..|++|..|.++|||++ | |++||+|++|||++|.++.... +..++.. .++.+.|+|.|+++.
T Consensus 46 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~--------~~~~~~~--~g~~v~l~v~R~~~~ 109 (120)
T 2eno_A 46 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQD--------AVDLFRN--AGYAVSLRVQHRLQV 109 (120)
T ss_dssp CCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHH--------HHHHHHH--HCSEEEEEEEEEEEC
T ss_pred CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHc--CCCeEEEEEEeCCcC
Confidence 46899999999999999 9 9999999999999999876311 2233333 478999999997663
No 270
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=98.28 E-value=4.5e-07 Score=77.59 Aligned_cols=62 Identities=11% Similarity=0.202 Sum_probs=48.6
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCC--CCCccccCcchhHHHHHhccC-CCCEEEEEEEECCEE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIAND--GTVPFRHGERIGFSYLVSQKY-TGDSAAVKVLRDSKI 423 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~--~~v~~~~~~~~~~~~~~~~~~-~g~~v~l~V~R~g~~ 423 (578)
..|++|..|.++|||++ | |++||+|++|||+++.+. .+ +..++.... .+..+.|+|.|.++.
T Consensus 32 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~----------~~~~l~~~~~~~~~v~l~v~R~~~~ 98 (108)
T 3cbz_A 32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDD----------AVRVLRDIVHKPGPIVLTVAKSGGG 98 (108)
T ss_dssp CCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHH----------HHHHHHHHHTSSSCEEEEEECCCC-
T ss_pred CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHH----------HHHHHHhcccCCCeEEEEEEeCCCC
Confidence 45899999999999999 9 999999999999999984 33 345555441 234699999997653
No 271
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.28 E-value=5.3e-07 Score=76.94 Aligned_cols=61 Identities=15% Similarity=0.219 Sum_probs=48.6
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
..|++|..|.++|||++ | |++||+|++|||++|.++.... +..++.. .++.+.|+|.|++.
T Consensus 39 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~--------~~~~~~~--~~~~v~l~v~R~~~ 101 (107)
T 1wf8_A 39 KLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNF--------AATVLRN--TKGNVRFVIGREKP 101 (107)
T ss_dssp EEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHH--------HHHHHHH--CCSEEEEEEEEECC
T ss_pred CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHhc--CCCeEEEEEEeCCC
Confidence 35899999999999999 9 9999999999999998765421 2233333 58899999999654
No 272
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.27 E-value=1.1e-06 Score=74.88 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=46.7
Q ss_pred EEEeecC---CcCCCCCCCEEEEeCCeecCCHHHHHHHHHhc-CCCeEEEEEecCeEEE
Q 008087 495 SLLWCLR---SPLCLNCFNKVLAFNGNPVKNLKSLANMVENC-DDEFLKFDLEYDQVVV 549 (578)
Q Consensus 495 vvs~v~A---~~aGl~~GD~I~~VNG~~V~~~~~l~~~l~~~-~~~~v~l~v~R~~~~~ 549 (578)
|....++ +++||++||+|++|||++|.+|.+|.++++.. +++.+.|++.|+++.+
T Consensus 41 V~~~~pas~A~~aGl~~GDvI~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R~g~~~ 99 (105)
T 2i4s_A 41 VSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQQH 99 (105)
T ss_dssp EEECSCTHHHHHHTCCTTCEEEEETTEETTSTTHHHHHHHHHTTCSEEEEEEEETTEEE
T ss_pred EecCCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCeEEEEEEECCEEE
Confidence 4444455 89999999999999999999999999999874 5779999999987653
No 273
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=98.26 E-value=2.4e-07 Score=77.66 Aligned_cols=55 Identities=9% Similarity=0.060 Sum_probs=48.1
Q ss_pred eEEEEe----ecCCcCCCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPLCLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
++++.. ++|+++||++||+|++|||++|.+ +.++.++|++.+++.+.|++.|+++
T Consensus 34 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~ 94 (98)
T 2jxo_A 34 GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD 94 (98)
T ss_dssp CEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEECCHHHH
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCch
Confidence 566654 489999999999999999999999 9999999999877788899988764
No 274
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=98.26 E-value=7.2e-07 Score=74.15 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=40.9
Q ss_pred ccCCcccccccChhhhhhhccccCCCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCC
Q 008087 328 PLLGVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDG 388 (578)
Q Consensus 328 ~~lGi~~~~~~~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~ 388 (578)
..+|+.+..+ +. ....|++|..|.++|||++ ||++||+|++|||++|.++.
T Consensus 20 ~~~Gf~v~~~-~~---------~~~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~ 71 (94)
T 3kzd_A 20 DTYGFSLSSV-EE---------DGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALN 71 (94)
T ss_dssp -CCSEEEEEE-CS---------SSSCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCC
T ss_pred CCcCEEEEec-CC---------CCcCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC
Confidence 3577777654 21 1235899999999999999 99999999999999999753
No 275
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=4.6e-07 Score=75.76 Aligned_cols=60 Identities=17% Similarity=0.165 Sum_probs=47.0
Q ss_pred CCCcEEEEeCCCCcccCCCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECC
Q 008087 352 QKGVRIRRVDPTAPESEVLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDS 421 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g 421 (578)
..+++|..|.++|||+.||++||+|++|||++|.+..... +..++.. .|+.+.|+|+|++
T Consensus 30 ~~~~~V~~V~~~spA~agL~~GD~Il~ing~~v~~~~~~~--------~~~~~~~--~g~~v~l~v~R~~ 89 (96)
T 2edv_A 30 SLPLTVVAVTAGGSAHGKLFPGDQILQMNNEPAEDLSWER--------AVDILRE--AEDSLSITVVRCT 89 (96)
T ss_dssp SSSCBCCCBCSSSSSTTTSCTTCBEEEESSCBSTTCCHHH--------HHHHHHH--CSSCEEEEEEECC
T ss_pred CCCeEEEEECCCCchhhCCCCCCEEEEECCEECCCCCHHH--------HHHHHHc--CCCeEEEEEEECC
Confidence 3489999999999995599999999999999998864311 1222322 6899999999976
No 276
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.26 E-value=6e-07 Score=77.54 Aligned_cols=58 Identities=24% Similarity=0.393 Sum_probs=49.1
Q ss_pred CcEEEEeCCCCcccC--CCCCCCEEEEECCEEeCCC--CCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 354 GVRIRRVDPTAPESE--VLKPSDIILSFDGIDIAND--GTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 354 Gv~V~~V~p~spA~~--GL~~GDiIl~InG~~V~~~--~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
+++|..|.++|||++ ||++||+|++|||++|.++ .+ +..++.. .++.+.|+|.|+++.
T Consensus 44 ~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~----------~~~~l~~--~g~~v~l~v~r~~~~ 105 (114)
T 1uew_A 44 PHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHAD----------IVKLIKD--AGLSVTLRIIPQEEL 105 (114)
T ss_dssp SCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHH----------HHHHHHH--TTTEEEEEECCCSCC
T ss_pred CeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHH----------HHHHHHc--CCCeEEEEEEeCCcC
Confidence 679999999999997 9999999999999999885 44 4455554 689999999998764
No 277
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=4.6e-07 Score=77.11 Aligned_cols=61 Identities=13% Similarity=0.270 Sum_probs=47.7
Q ss_pred CCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 352 QKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
..|++|..|.++|||++ ||++||+|++|||++|.++.... +..++.. .++.+.|+|.|++.
T Consensus 31 ~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~--------~~~~~~~--~~~~v~l~v~r~~~ 92 (106)
T 2eei_A 31 KKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEE--------VVEKVKK--SGSRVMFLLVDKET 92 (106)
T ss_dssp CCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHH--------HHHHHHH--HCSEEEEEECCTTT
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH--------HHHHHHh--CCCeEEEEEEcCch
Confidence 35899999999999999 99999999999999998764311 2223322 47889999988764
No 278
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=98.25 E-value=6.2e-07 Score=76.43 Aligned_cols=60 Identities=22% Similarity=0.305 Sum_probs=46.4
Q ss_pred CCcEEEEeCCCCcccC-C--CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCC--CCEEEEEEEEC
Q 008087 353 KGVRIRRVDPTAPESE-V--LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYT--GDSAAVKVLRD 420 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G--L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~--g~~v~l~V~R~ 420 (578)
.+++|..|.++|||++ | |++||+|++|||++|.++.... +..++..... +..+.|+|.|+
T Consensus 43 ~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~--------~~~~i~~~~~~~~~~v~l~v~r~ 107 (107)
T 3nfk_A 43 MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQ--------VVLFIKASCERHSGELMLLVRPN 107 (107)
T ss_dssp EEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHH--------HHHHHHCGGGSBTTBEEEEEECC
T ss_pred CCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHH--------HHHHHHhccccCCcEEEEEEEcC
Confidence 4799999999999999 9 9999999999999999886421 2234433321 34899998874
No 279
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=98.24 E-value=9.9e-07 Score=75.62 Aligned_cols=58 Identities=21% Similarity=0.215 Sum_probs=46.1
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCC--CCCccccCcchhHHHHHhccCCCCEEEEEEEECC
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIAND--GTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDS 421 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~--~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g 421 (578)
.+++|..|.++|||++ ||++||+|++|||++|.+| .+ +..++.. ..+..+.|+|.|..
T Consensus 44 ~~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~d----------v~~~i~~-~~~~~v~l~V~~~~ 104 (109)
T 2vsv_A 44 APVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSE----------VMKLLKS-FGEDEIEMKVVSLL 104 (109)
T ss_dssp SSCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHH----------HHHHHHT-TTTSCEEEEEESCC
T ss_pred CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH----------HHHHHHh-CCCCeEEEEEEECC
Confidence 4789999999999999 9999999999999999966 44 3345543 23445899988754
No 280
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=98.24 E-value=5.4e-07 Score=74.42 Aligned_cols=50 Identities=8% Similarity=0.006 Sum_probs=43.8
Q ss_pred EeecCCcCCCCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 497 LWCLRSPLCLNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 497 s~v~A~~aGl~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
.+++|+++||++||+|++|||++|. +++++.++++.. ++.+.|++.|++.
T Consensus 36 ~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~ 87 (91)
T 2vsp_A 36 KGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSS-GKNVTLLVCGKKA 87 (91)
T ss_dssp TTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-CSEEEEEEEC---
T ss_pred CCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeCCc
Confidence 3568999999999999999999999 999999999987 8899999998765
No 281
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.24 E-value=5.9e-07 Score=75.67 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=46.9
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.+++|..|.++|||++ ||++||+|++|||++|.++.... +..++.. .++.+.|+|.|++.
T Consensus 36 ~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~--------~~~~l~~--~~~~v~l~v~R~~~ 96 (100)
T 1whd_A 36 SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVE--------LAHEIRS--CPSEIILLVWRVSG 96 (100)
T ss_dssp SSCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHH--------HHHHHHH--CSSEEEEEEEECCS
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH--------HHHHHHc--CCCeEEEEEEECCC
Confidence 4788999999999999 99999999999999999763211 3344443 35679999999753
No 282
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.23 E-value=6.9e-07 Score=78.41 Aligned_cols=61 Identities=10% Similarity=0.205 Sum_probs=48.4
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
.|++|..|.++|||++ | |++||+|++|||++|.++.... +..++. ..++.+.|+|.|+++.
T Consensus 51 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~--------~~~~~~--~~~~~v~l~v~R~~~~ 113 (124)
T 2daz_A 51 MSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQN--------ASAIIK--TAPSKVKLVFIRNEDA 113 (124)
T ss_dssp CCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHH--------HHHHHH--HSCSEEEEEEEECTTH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHH--cCCCeEEEEEEeCCCc
Confidence 5899999999999999 9 9999999999999998765421 112232 2467999999998754
No 283
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=98.23 E-value=9.4e-07 Score=72.92 Aligned_cols=54 Identities=11% Similarity=0.091 Sum_probs=47.3
Q ss_pred eEEEEe----ecCCcCCCCCCCEEEEeCCeecCCHH--HHHHHHHhcCCCeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPLCLNCFNKVLAFNGNPVKNLK--SLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~~~--~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
++++.. ++|+++||++||+|++|||++|.++. ++.+++++ +++.+.|++.|+++
T Consensus 28 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~g~ 87 (91)
T 2pkt_A 28 PLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKG-CTDNLTLTVARSEH 87 (91)
T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEEECC
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCc
Confidence 455554 48999999999999999999999988 99999998 88899999999864
No 284
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=98.23 E-value=1.8e-06 Score=71.91 Aligned_cols=54 Identities=7% Similarity=0.059 Sum_probs=47.5
Q ss_pred eEEEEe----ecCCcCCCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPLCLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
++++.. ++|+++||++||+|++|||++|.+ +.++.++++.. ++.+.|++.|++.
T Consensus 31 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~ 90 (96)
T 2v90_A 31 GQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQ-GSCVSLTVVDPEA 90 (96)
T ss_dssp EEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEECCCT
T ss_pred CeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEECCCC
Confidence 566654 489999999999999999999998 89999999985 8899999999863
No 285
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.22 E-value=3.2e-07 Score=77.58 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=48.4
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.|++|..|.++|||++ | |++||+|++|||+++.++.... +..++. ..|+.+.|+|.|+++
T Consensus 36 ~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~--------~~~~~~--~~g~~v~l~v~R~~~ 97 (103)
T 1wfv_A 36 MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHAR--------AIELIK--SGGRRVRLLLKRGTG 97 (103)
T ss_dssp EEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHH--------HHHHHH--HHCSEECEEEECTTC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHH--cCCCeEEEEEEECCC
Confidence 3899999999999999 9 9999999999999999874311 223333 357899999999875
No 286
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.22 E-value=1.9e-06 Score=92.13 Aligned_cols=69 Identities=17% Similarity=0.350 Sum_probs=59.6
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEEEEEec
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNITLA 431 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v~l~ 431 (578)
.|++|..|.++|||++ ||++||+|++|||++|.+|.+ |..++.. .++.+.|+|.|+|+.+.+.+...
T Consensus 363 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~----------~~~~l~~--~~~~v~l~v~R~g~~~~~~~~~~ 430 (436)
T 4a8c_A 363 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAE----------MRKVLAA--KPAIIALQIVRGNESIYLLMRLE 430 (436)
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCHHH----------HHHHHHh--CCCeEEEEEEECCEEEEEEEEec
Confidence 5899999999999999 999999999999999999988 5566665 34589999999999988887765
Q ss_pred cc
Q 008087 432 TH 433 (578)
Q Consensus 432 ~~ 433 (578)
.+
T Consensus 431 ~~ 432 (436)
T 4a8c_A 431 HH 432 (436)
T ss_pred cc
Confidence 54
No 287
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.22 E-value=3.9e-07 Score=79.17 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=48.1
Q ss_pred CcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCC--CCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 354 GVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIAN--DGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 354 Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~--~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
+++|..|.++|||++ | |++||+|++|||++|.+ +.+ +..++. ..|+.+.|+|.|+++.
T Consensus 43 ~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~----------~~~~l~--~~g~~v~l~v~r~~~~ 104 (117)
T 1v62_A 43 VITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLE----------ATKLLA--SISEKVRLEILPVPQS 104 (117)
T ss_dssp EEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHH----------HHHHHH--SCSSEEEEEECCBTTB
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH----------HHHHHH--hCCCeEEEEEEECCCC
Confidence 499999999999999 9 99999999999999954 444 345555 3689999999997653
No 288
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.21 E-value=7.5e-07 Score=77.08 Aligned_cols=61 Identities=23% Similarity=0.267 Sum_probs=48.6
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
.|++|..|.++|||++ | |++||+|++|||++|.++.... +..++.. .++.+.|+|.|+++.
T Consensus 43 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~--------~~~~l~~--~~~~v~l~v~R~~~~ 105 (116)
T 2dm8_A 43 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEE--------AITALRQ--TPQKVRLVVYRDEAH 105 (116)
T ss_dssp SSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHH--------HHHHHHT--CCSEEEEEEECCSSC
T ss_pred CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHh--CCCeEEEEEEeCCcc
Confidence 4899999999999999 9 9999999999999999864210 2233332 458899999998764
No 289
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=98.20 E-value=4.7e-07 Score=74.44 Aligned_cols=63 Identities=21% Similarity=0.301 Sum_probs=47.1
Q ss_pred hhccccCCCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCC--CCCccccCcchhHHHHHhccCCCCEEEEEEEEC
Q 008087 345 AMSMKADQKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIAND--GTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRD 420 (578)
Q Consensus 345 ~lgl~~~~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~--~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~ 420 (578)
.+|+.- ..|++|..|.++|||++ | |+.||+|++|||+++.+. .+ +..++.. .+.++.|++.+.
T Consensus 14 ~~G~~~-~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~----------~~~~i~~--~~~~v~L~v~~~ 80 (88)
T 3e17_A 14 EYGLRL-GSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTD----------ARKLIEK--SRGKLQLVVLRD 80 (88)
T ss_dssp CCCEEE-EEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHH----------HHHHHHH--TTTEEEEEECCC
T ss_pred CCCEEE-eCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH----------HHHHHHc--CCCeEEEEEeCC
Confidence 455543 24899999999999999 9 999999999999999544 33 3345544 356788877653
No 290
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=98.20 E-value=9.9e-07 Score=75.12 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=46.7
Q ss_pred CcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCC--CCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 354 GVRIRRVDPTAPESE-VLKPSDIILSFDGIDIAND--GTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 354 Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~--~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
+++|..|.++|||++ ||++||+|++|||++|.++ .+ +..++.. .|+.+.|+|.|.+.
T Consensus 44 ~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~----------~~~~l~~--~g~~v~l~v~r~~~ 103 (107)
T 3qe1_A 44 LQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQ----------VVDLIRA--GEKELILTVLSVES 103 (107)
T ss_dssp CEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHH----------HHHHHHH--CSSEEEEEEECSSC
T ss_pred ceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH----------HHHHHHc--CCCEEEEEEEcCCC
Confidence 567999999999999 9999999999999999954 33 3344543 58899999998654
No 291
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.20 E-value=1.1e-06 Score=72.74 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=46.7
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECC
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDS 421 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g 421 (578)
..|++|..|.++|||++ | |++||+|++|||+++.++.... +..++.. .++.+.|+|.|++
T Consensus 29 ~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~--------~~~~~~~--~~~~v~l~v~r~~ 90 (93)
T 2dkr_A 29 NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEK--------AVELLKA--AQGSVKLVVRSGP 90 (93)
T ss_dssp SCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHH--------HHHHHHH--CCSEEEEEECCCC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHh--CCCcEEEEEEeCC
Confidence 45899999999999998 7 9999999999999999763210 2233333 3568999998865
No 292
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=98.19 E-value=1.8e-06 Score=77.39 Aligned_cols=59 Identities=8% Similarity=0.041 Sum_probs=49.1
Q ss_pred ceEEEEee----cCCcCCCCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCeEEEE
Q 008087 492 QMSSLLWC----LRSPLCLNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQVVVL 550 (578)
Q Consensus 492 ~~vvvs~v----~A~~aGl~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~~~~l 550 (578)
.+++|..+ +|+++||++||+|++|||++|. ++.++.++|+..+++.+.|++.|++....
T Consensus 64 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~ 128 (139)
T 2vz5_A 64 KGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKA 128 (139)
T ss_dssp CCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHCCTTCSEEEEEEEECC----
T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCEEEEEEEECCEEEE
Confidence 46766654 8999999999999999999999 69999999998778899999999876543
No 293
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.19 E-value=4.1e-07 Score=78.15 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=47.5
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
..|++|..|.++|||++ | |++||+|++|||++|.+..... +..++. ..++.+.|+|.|+..
T Consensus 43 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~--------~~~~l~--~~g~~v~l~v~r~~~ 105 (111)
T 1uju_A 43 DEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGE--------AVQLLR--SVGDTLTVLVCDGFE 105 (111)
T ss_dssp CCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHH--------HHHHHS--SCSSEEEECCCCCCC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHH--cCCCeEEEEEEECCC
Confidence 45899999999999999 9 9999999999999999653210 223332 367899999988653
No 294
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=98.18 E-value=7.1e-07 Score=78.74 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=49.4
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhcc-----CCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQK-----YTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~-----~~g~~v~l~V~R~g~ 422 (578)
.|++|..|.++|||++ | |++||+|++|||+.+.+...-. +..++... ..++.|.|+|.|++.
T Consensus 55 ~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~--------~~~~l~~~~~~~g~~~~~v~l~v~R~~~ 123 (127)
T 1wg6_A 55 LGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHE--------AMETLRRSMSMEGNIRGMIQLVILRRSG 123 (127)
T ss_dssp EEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHH--------HHHHHHHHHHHHHHHTCEEEEEEEECSC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHHhhccccCCCCEEEEEEEeCCC
Confidence 4899999999999999 8 9999999999999998864210 33445443 247899999999765
No 295
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.18 E-value=3.7e-06 Score=70.20 Aligned_cols=55 Identities=9% Similarity=0.086 Sum_probs=47.2
Q ss_pred eEEEEee--cCCcCCCCCCCEEEEeCCeecCC--HHHHHHHHHhcC-CCeEEEEEecCeE
Q 008087 493 MSSLLWC--LRSPLCLNCFNKVLAFNGNPVKN--LKSLANMVENCD-DEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~v--~A~~aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~-~~~v~l~v~R~~~ 547 (578)
++++..+ .|+++||++||+|++|||++|.+ +.++.++|+..+ ++.+.|+|.|++.
T Consensus 33 Gv~V~~v~~~a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 92 (96)
T 1ujv_A 33 GQRVKQILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSG 92 (96)
T ss_dssp EEEEEEESCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCSS
T ss_pred CEEEEEEecccccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCC
Confidence 4666655 38899999999999999999986 599999999985 8899999999864
No 296
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.18 E-value=2.1e-07 Score=82.06 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=48.9
Q ss_pred CCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeC--CCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 352 QKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIA--NDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~--~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
..|++|..|.++|||++ ||++||+|++|||++|. ++.+ +..++.. .|+.+.|+|.|+++
T Consensus 60 ~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~----------~~~~l~~--~g~~v~l~v~r~~~ 121 (126)
T 2yuy_A 60 MDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQ----------VIALIQN--SDTTLELSVMPKDS 121 (126)
T ss_dssp CCCCCBCCCCSSSHHHHHTCCSSCCCCEETTEECSSCCHHH----------HHHHHHT--CTTEEEEECCCCCC
T ss_pred CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHH----------HHHHHHc--CCCEEEEEEEECCC
Confidence 35899999999999999 99999999999999998 4444 3445544 38999999999775
No 297
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=98.18 E-value=2.6e-06 Score=69.73 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=46.3
Q ss_pred eEEEEe----ecCCcCCCCCCCEEEEeCCeecCCH--HHHHHHHHhcCCCeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPLCLNCFNKVLAFNGNPVKNL--KSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~~--~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
++++.. ++|+++||++||+|++|||++|.++ .++.++++.. ++.+.|++.|++.
T Consensus 28 ~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~g~ 87 (88)
T 2uzc_A 28 PLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGC-TGSLNMTLQRESD 87 (88)
T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECCCC
T ss_pred CeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeCCC
Confidence 455554 4899999999999999999999988 8899888876 7889999999864
No 298
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.18 E-value=1.2e-06 Score=76.84 Aligned_cols=57 Identities=7% Similarity=0.073 Sum_probs=49.8
Q ss_pred ceEEEEe----ecCCcCC-CCCCCEEEEeCCeecCCHHHHHHHHHhcCCCeEEEEEecCeEE
Q 008087 492 QMSSLLW----CLRSPLC-LNCFNKVLAFNGNPVKNLKSLANMVENCDDEFLKFDLEYDQVV 548 (578)
Q Consensus 492 ~~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~~~~~l~~~l~~~~~~~v~l~v~R~~~~ 548 (578)
.+++|.. ++|+++| |++||+|++|||++|.++.+|.++|+..+++.+.|+|.|++..
T Consensus 48 ~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~l~~~~g~~v~l~v~R~g~~ 109 (124)
T 1wh1_A 48 IGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIARPELQ 109 (124)
T ss_dssp CCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSHHHHHHHHTCSSCCSCCEEEEECSSC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCHHHHHHHHHhCCCCEEEEEEEECCEE
Confidence 3566654 4899999 9999999999999999999999999987788999999998753
No 299
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.18 E-value=1e-06 Score=76.40 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=48.1
Q ss_pred CCCcEEEEeCCCCcccCCCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 352 QKGVRIRRVDPTAPESEVLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
..|++|..|.++|||+.||++||+|++|||++|.++.... +..++.. .++.+.|+|.|.++
T Consensus 45 ~~gv~V~~V~~~spA~~gL~~GD~I~~Vng~~v~~~~~~~--------~~~~l~~--~~~~v~l~v~R~~~ 105 (117)
T 2csj_A 45 ETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVLHSF--------AVQQLRK--SGKIAAIVVKRPRK 105 (117)
T ss_dssp CCBCEEEEECTTSSHHHHBCTTCEEEEESSCBCBTCCHHH--------HHHHHHH--SCSEEEEEEEEEEE
T ss_pred CCCEEEEEECCCCcccccCCCCCEEEEECCEECCCcCHHH--------HHHHHhc--CCCeEEEEEEECCc
Confidence 4589999999999996699999999999999998875421 2223333 58899999999654
No 300
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=98.18 E-value=1.8e-06 Score=74.66 Aligned_cols=70 Identities=13% Similarity=0.133 Sum_probs=50.5
Q ss_pred cccCCcccccccChhhhhhhccccCCCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEe--CCCCCCccccCcchhHHH
Q 008087 327 FPLLGVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDI--ANDGTVPFRHGERIGFSY 402 (578)
Q Consensus 327 ~~~lGi~~~~~~~~~~~~~lgl~~~~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V--~~~~~v~~~~~~~~~~~~ 402 (578)
.+.+|+.+..- . ....+++|..|.++|||++ | |++||+|++|||++| .++.+ +..
T Consensus 35 ~~~lG~~l~~~-~----------~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~----------~~~ 93 (114)
T 2gzv_A 35 QNLIGISIGGG-A----------QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVE----------VAK 93 (114)
T ss_dssp TSCCSEEEEEC-C----------C--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHH----------HHH
T ss_pred CCcEeEEEEeC-C----------CCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHH----------HHH
Confidence 35677777543 1 1124799999999999999 9 999999999999999 55555 334
Q ss_pred HHhccCCCCEEEEEEEE
Q 008087 403 LVSQKYTGDSAAVKVLR 419 (578)
Q Consensus 403 ~~~~~~~g~~v~l~V~R 419 (578)
++.. .++.+.|+|++
T Consensus 94 ~l~~--~~~~v~l~v~~ 108 (114)
T 2gzv_A 94 MIQE--VKGEVTIHYNK 108 (114)
T ss_dssp HHHH--CCSEEEEEEEC
T ss_pred HHHc--CCCeEEEEEEe
Confidence 5543 24567887764
No 301
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=98.17 E-value=2e-06 Score=71.89 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=46.5
Q ss_pred ceEEEEe----ecCCcCC-CCCCCEEEEeCCeecCCH--HHHHHHHHhcCCCeEEEEEecCeE
Q 008087 492 QMSSLLW----CLRSPLC-LNCFNKVLAFNGNPVKNL--KSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 492 ~~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~~~--~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
.++++.. ++|+++| |++||+|++|||++|.++ .++.+++++ +++.+.|++.|+++
T Consensus 37 ~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~g~ 98 (98)
T 1ihj_A 37 TGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE-ADFKIELEIQTFDK 98 (98)
T ss_dssp EEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH-SCSEEEEEEEEC--
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEEeCCC
Confidence 3566665 4799999 999999999999999987 889999987 78899999999863
No 302
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=98.17 E-value=2e-06 Score=70.70 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=44.8
Q ss_pred CCcEEEEeCCCCcccC--CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEE
Q 008087 353 KGVRIRRVDPTAPESE--VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLR 419 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~--GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R 419 (578)
.|++|..|.++|||++ ||++||+|++|||++|.++.... +..++ ...++.+.|+|.|
T Consensus 30 ~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~--------~~~~~--~~~~~~v~l~v~r 88 (90)
T 1qav_A 30 MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDE--------AVQAL--KKTGKEVVLEVKY 88 (90)
T ss_dssp EEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHH--------HHHHH--HTCCSEEEEEEEE
T ss_pred CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHH--------HHHHH--HhCCCeEEEEEEE
Confidence 4899999999999986 79999999999999999864311 11222 2357889999887
No 303
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=98.16 E-value=1e-06 Score=83.10 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=50.6
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCC--CCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIAN--DGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILN 425 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~--~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~ 425 (578)
.|++|..|.++|||++ | |++||+|++|||++|.+ |.+ +..++.. .++.+.|+|.|++....
T Consensus 130 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~----------~~~~l~~--~~~~v~l~v~R~~~~~~ 194 (196)
T 3gsl_A 130 NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHED----------AVAALKN--TYDVVYLKVAKPSNAET 194 (196)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHH----------HHHHHHS--CCEEEEEEEEEESCCCE
T ss_pred CCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHH----------HHHHHHc--CCCeEEEEEeCCCCccc
Confidence 5899999999999999 9 99999999999999998 444 3344543 47899999999886543
No 304
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.16 E-value=8.4e-07 Score=76.07 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=49.3
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccC--CCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKY--TGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~--~g~~v~l~V~R~g~ 422 (578)
.+++|..|.+++||++ | |++||+|++|||+++.++..- .+..++.... .+..+.|+|.|+++
T Consensus 41 ~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~--------~~~~~l~~~~~r~~~~~~l~v~R~~~ 106 (109)
T 1wi4_A 41 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFE--------EAKSIITRAKLRSESPWEIAFIRSGP 106 (109)
T ss_dssp SSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHH--------HHHHHHHHSCCSSSSCEEEEEECCCC
T ss_pred CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHH--------HHHHHHHccccCCCceEEEEEEeCCC
Confidence 3799999999999999 9 999999999999999874321 1345555543 47889999999764
No 305
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.16 E-value=1.4e-06 Score=72.40 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=47.0
Q ss_pred eEEEEe----ecCCcCCCCCCCEEEEeCCeecCCH--HHHHHHHHhcCCCeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPLCLNCFNKVLAFNGNPVKNL--KSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~~--~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
++++.. ++|+++||++||+|++|||++|.++ .++.++++..+ +.+.|++.|+++
T Consensus 31 g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~g~ 90 (94)
T 1vb7_A 31 PIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SPLRLQLDRSSG 90 (94)
T ss_dssp EEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEECCCC
T ss_pred CeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEECCc
Confidence 455554 5899999999999999999999987 99999999876 889999999864
No 306
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=98.16 E-value=3.4e-06 Score=69.49 Aligned_cols=50 Identities=20% Similarity=0.198 Sum_probs=41.8
Q ss_pred eecCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCeEE
Q 008087 498 WCLRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQVV 548 (578)
Q Consensus 498 ~v~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~~~ 548 (578)
+++|+++| |+.||+|++|||+++. ++.++.+++++.. +.+.|++.|++..
T Consensus 33 ~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~g~~ 85 (92)
T 3cyy_A 33 DSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK-GKLKMVVQRDERA 85 (92)
T ss_dssp TCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTT-TEEEEEEEC----
T ss_pred CChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CcEEEEEEeCCce
Confidence 35799999 9999999999999999 9999999999855 4899999998754
No 307
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=98.16 E-value=2e-06 Score=76.40 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=48.0
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.|++|..|.++|||++ ||++||+|++|||++|.++.... +..++.. .|+.+.|+|.|.+.
T Consensus 65 ~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~--------~~~~l~~--~g~~v~l~v~~~~~ 125 (132)
T 3l4f_D 65 ALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQ--------VVNMIRQ--GGNTLMVKVVMVTR 125 (132)
T ss_dssp CSEEEEEECTTSGGGGGTCCTTCEEEEESSSBCTTSCHHH--------HHHHHHH--TTTEEEEEEECCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH--------HHHHHHc--CCCEEEEEEEECCC
Confidence 4899999999999999 99999999999999999764311 2233433 67899999988654
No 308
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=98.16 E-value=1.7e-06 Score=75.24 Aligned_cols=59 Identities=24% Similarity=0.343 Sum_probs=46.7
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEEC
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRD 420 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~ 420 (578)
..|++|..|.++|||++ | |++||+|++|||+++.++.... +..++.. .++++.|+|.|.
T Consensus 52 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~--------~~~~l~~--~~~~v~L~v~R~ 112 (118)
T 3b76_A 52 DLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSE--------AVALLKR--TSSSIVLKALEV 112 (118)
T ss_dssp CCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHH--------HHHHHHS--CCSEEEEEEEEE
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHc--CCCeEEEEEEEC
Confidence 45899999999999999 9 9999999999999999543211 2334443 478899999984
No 309
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.15 E-value=2.6e-06 Score=72.58 Aligned_cols=60 Identities=18% Similarity=0.320 Sum_probs=46.9
Q ss_pred CCCcEEEEeCCCCcccC--CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECC
Q 008087 352 QKGVRIRRVDPTAPESE--VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDS 421 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~--GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g 421 (578)
..|++|..|.++|||++ ||++||+|++|||++|.+..... +..++.. .++.+.|+|.|++
T Consensus 40 ~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~--------~~~~~~~--~~~~v~l~v~R~~ 101 (107)
T 1uhp_A 40 SEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQ--------AVEAFKT--AKEPIVVQVLRRT 101 (107)
T ss_dssp SCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHH--------HHHHHHH--CCSSEEEEEEECC
T ss_pred CCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHc--CCCcEEEEEEeCC
Confidence 46899999999999987 79999999999999998754311 1223332 5788999999865
No 310
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=98.15 E-value=2.1e-06 Score=71.60 Aligned_cols=55 Identities=9% Similarity=0.052 Sum_probs=48.3
Q ss_pred ceEEEEe----ecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 492 QMSSLLW----CLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 492 ~~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
.++++.. ++|+++| |++||+|++|||+++.+ +.++.++++. .++.+.|++.|++.
T Consensus 32 ~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~ 93 (97)
T 2jil_A 32 RPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQEAALLIEYDVS 93 (97)
T ss_dssp EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEEECC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence 3566665 4899999 99999999999999999 9999999998 78899999998764
No 311
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=98.15 E-value=1.4e-06 Score=82.63 Aligned_cols=59 Identities=19% Similarity=0.185 Sum_probs=48.2
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.|++|..|.++|||++ ||++||+|++|||++|.++..-. +..++. .|+.+.|+|.|+|+
T Consensus 110 ~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~--------~~~~l~---~~~~v~l~v~r~g~ 169 (192)
T 3k1r_A 110 CGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEE--------VINLIR---TEKTVSIKVRHIGL 169 (192)
T ss_dssp EEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHH--------HHHHHT---SSSEEEEEEEECCE
T ss_pred CCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHH--------HHHHHc---CCCeEEEEEEECCc
Confidence 4899999999999999 99999999999999999843210 223333 38999999999987
No 312
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.15 E-value=1e-06 Score=74.57 Aligned_cols=51 Identities=10% Similarity=0.058 Sum_probs=46.4
Q ss_pred eecCCcCCCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeEEE
Q 008087 498 WCLRSPLCLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQVVV 549 (578)
Q Consensus 498 ~v~A~~aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~~~ 549 (578)
+++|+++||++||+|++|||++|.+ +.++.++|+.. ++.+.|++.|+++.+
T Consensus 39 ~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~g~~~ 91 (103)
T 1v5l_A 39 GSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA-SYQLCLKIDRAETRL 91 (103)
T ss_dssp TSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTC-CSEEECEECCCTTTT
T ss_pred CCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEECCeEc
Confidence 4589999999999999999999999 99999999987 889999999987543
No 313
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=98.15 E-value=8.4e-07 Score=78.27 Aligned_cols=58 Identities=24% Similarity=0.296 Sum_probs=47.2
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeC-C--CCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIA-N--DGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~-~--~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.|++|..|.+++||++ | |++||+|++|||++|. + +.+ +..++.. .++.+.|+|.|++.
T Consensus 54 ~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~----------~~~~l~~--~~~~v~l~v~r~~~ 116 (128)
T 2db5_A 54 VDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQ----------AIALLQQ--TTGSLRLIVAREPV 116 (128)
T ss_dssp EEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHH----------HHHHHHH--CCSEEEEEEEECCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHH----------HHHHHHc--CCCeEEEEEEcCCC
Confidence 4899999999999999 9 9999999999999997 3 333 3334443 57899999999753
No 314
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=98.14 E-value=3.5e-06 Score=69.37 Aligned_cols=36 Identities=25% Similarity=0.470 Sum_probs=33.9
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCC
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDG 388 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~ 388 (578)
.|++|..|.++|||++ ||++||+|++|||+++.++.
T Consensus 27 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~ 63 (91)
T 1g9o_A 27 LGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKET 63 (91)
T ss_dssp SSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCC
Confidence 5899999999999999 99999999999999999864
No 315
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=98.14 E-value=3.4e-06 Score=69.01 Aligned_cols=54 Identities=13% Similarity=0.077 Sum_probs=43.9
Q ss_pred eEEEE---eecCCcCCCCCCCEEEEeCCeecCCH--HHHHHHHHhc-CCCeEEEEEecCeE
Q 008087 493 MSSLL---WCLRSPLCLNCFNKVLAFNGNPVKNL--KSLANMVENC-DDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs---~v~A~~aGl~~GD~I~~VNG~~V~~~--~~l~~~l~~~-~~~~v~l~v~R~~~ 547 (578)
++++. +++|+ +||++||+|++|||++|.++ .++.+++++. +++.+.|++.|+++
T Consensus 28 ~~~v~~v~~spA~-aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 87 (88)
T 3bpu_A 28 GQRVKQIVDSPRS-RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQTR 87 (88)
T ss_dssp SEEEEECCC--CC-TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEECC
T ss_pred cEEEEEecCChhH-hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEEEEeCCc
Confidence 45444 55788 99999999999999999987 9999999864 67899999988764
No 316
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.14 E-value=1.6e-06 Score=93.07 Aligned_cols=64 Identities=17% Similarity=0.291 Sum_probs=56.2
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEEEE
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNI 428 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v 428 (578)
.|++|..|.++|||++ ||++||+|++|||++|.++.+ |..++.. .++.+.|+|.|+|+.+.+.+
T Consensus 386 ~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~~~~----------~~~~l~~--~~~~v~l~v~R~g~~~~v~l 450 (451)
T 3pv2_A 386 IGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKS----------LQTIAQE--KKKELLVQVLRGPGSMYLLV 450 (451)
T ss_dssp EEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHH----------HHHHTTS--SCSCEEEEEEETTEEEEEEE
T ss_pred CceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCHHH----------HHHHHhc--CCCeEEEEEEECCEEEEEEe
Confidence 4899999999999999 999999999999999999877 5566655 57889999999999877765
No 317
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=98.14 E-value=2.9e-06 Score=69.73 Aligned_cols=55 Identities=9% Similarity=0.089 Sum_probs=47.4
Q ss_pred ceEEEEe----ecCCcCCCCCCCEEEEeCCeecCCH--HHHHHHHHhcCCCeEEEEEecCeE
Q 008087 492 QMSSLLW----CLRSPLCLNCFNKVLAFNGNPVKNL--KSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 492 ~~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~~--~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
.++++.. ++|+++||++||+|++|||++|.++ .++.++++.. ++.+.|++.|.+.
T Consensus 28 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~ 88 (90)
T 2he4_A 28 PGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR-EDEARLLVVGPST 88 (90)
T ss_dssp SSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-SSEEEEEEECCCC
T ss_pred CCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEEccCC
Confidence 3566664 4799999999999999999999998 9999999986 7889999988753
No 318
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=1.5e-06 Score=73.16 Aligned_cols=59 Identities=8% Similarity=0.164 Sum_probs=46.6
Q ss_pred CCcEEEEeCCCCcccC--CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE--VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~--GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.+++|..|.++|||++ ||++||+|++|||++|.++ ... +..++.. .++.+.|+|.|+++
T Consensus 35 ~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~--------~~~~~~~--~~~~v~l~v~R~~~ 95 (100)
T 2edp_A 35 EPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQE--------ALILIKG--SFRILKLIVRRRNS 95 (100)
T ss_dssp EEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHH--------HHHHHHT--CCSSCEEEEEECCC
T ss_pred CCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHH--------HHHHHHh--CCCeEEEEEEeCCC
Confidence 3789999999999988 7999999999999999985 210 2223332 47889999999875
No 319
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=98.14 E-value=3.5e-06 Score=67.52 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=44.0
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCe
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
++++.. ++|+++| |++||+|++|||+++. ++.++.+++++..+ .+.|++.|++
T Consensus 22 gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~R~g 81 (81)
T 2rcz_A 22 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKG-KLKMVVQRDE 81 (81)
T ss_dssp EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTT-EEEEEEEC--
T ss_pred CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-eEEEEEEeCC
Confidence 455554 4788999 9999999999999999 99999999998654 8899998864
No 320
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.14 E-value=1.1e-06 Score=75.45 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=47.9
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.|++|..|.++|||++ | |++||+|++|||++|.++.... +..++. ..++.+.|+|.|+++
T Consensus 39 ~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~--------~~~~~~--~~~~~v~l~v~r~~~ 100 (113)
T 1um7_A 39 EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQ--------AAAALK--RAGQSVTIVAQYRPE 100 (113)
T ss_dssp CCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHH--------HHHHHH--SCCSEEEEEEECCHH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHH--hCCCcEEEEEEECcc
Confidence 5899999999999999 9 9999999999999999985311 222332 357899999998754
No 321
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=98.13 E-value=9.4e-07 Score=72.63 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=44.3
Q ss_pred eecCCc-CCCCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 498 WCLRSP-LCLNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 498 ~v~A~~-aGl~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
+++|++ +||++||+|++|||+++. +++++.++|+..++ .+.|++.|++.
T Consensus 35 gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~r~~~ 86 (88)
T 1kwa_A 35 GGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRG-SITFKIVPSYR 86 (88)
T ss_dssp TSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCE-EEEEEEECCCC
T ss_pred CCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC-cEEEEEECCcC
Confidence 457999 899999999999999999 99999999999877 89999988764
No 322
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=98.12 E-value=1.9e-06 Score=71.34 Aligned_cols=59 Identities=14% Similarity=0.249 Sum_probs=45.8
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeC--CCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIA--NDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~--~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
..+++|..|.++|||++ | |++||+|++|||+++. ++.+ +..++.. .+..+.|+|.|..+
T Consensus 27 ~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~----------~~~~l~~--~~~~v~l~v~~~~~ 89 (93)
T 3o46_A 27 TGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEE----------IIQILAQ--SQGAITFKIIPGSK 89 (93)
T ss_dssp TCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHH----------HHHHHHH--CCEEEEEEEECC--
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH----------HHHHHHh--CCCeEEEEEEeCCC
Confidence 35899999999999999 9 9999999999999994 4444 3455544 34588999987654
No 323
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=98.11 E-value=3.3e-06 Score=86.40 Aligned_cols=57 Identities=7% Similarity=-0.008 Sum_probs=49.8
Q ss_pred ceEEEEe----ecCCcCCCCCCCEEEEeCCeecCCHHHHHHHHHh-cCCCeEEEEEecCeEE
Q 008087 492 QMSSLLW----CLRSPLCLNCFNKVLAFNGNPVKNLKSLANMVEN-CDDEFLKFDLEYDQVV 548 (578)
Q Consensus 492 ~~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~~~~l~~~l~~-~~~~~v~l~v~R~~~~ 548 (578)
.++++.. ++|+++||++||+|++|||++|.++.+|.++|+. .+++.+.|++.|+++.
T Consensus 244 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~ 305 (318)
T 1te0_A 244 QGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQ 305 (318)
T ss_dssp CCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCCHHHHHHHHHTSCTTCEEEEEEESSSCE
T ss_pred CcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 4565554 4899999999999999999999999999999997 5788999999998754
No 324
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.11 E-value=2.6e-06 Score=74.54 Aligned_cols=61 Identities=5% Similarity=-0.036 Sum_probs=51.7
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhcC-CCeEEEEEecCeEEEEech
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENCD-DEFLKFDLEYDQVVVLRTK 553 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~~-~~~v~l~v~R~~~~~l~~~ 553 (578)
+++|.. ++|+++| |+.||+|++|||++|. ++.++.++|++.+ ++.+.|+|.|++...++..
T Consensus 45 gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~~~~~ 113 (123)
T 1ueq_A 45 FLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPE 113 (123)
T ss_dssp CCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESCCCCCCSS
T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCCCCCCCC
Confidence 455554 4899999 9999999999999998 7899999999885 8899999999987666544
No 325
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.11 E-value=5.7e-07 Score=78.28 Aligned_cols=64 Identities=20% Similarity=0.196 Sum_probs=48.3
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEE
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKIL 424 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~ 424 (578)
..|++|..|.+++||++ | |++||+|++|||++|.++.... +..++.. ..+..+.+++.|+++..
T Consensus 41 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~--------~~~~l~~-~~~~~~~l~v~R~~~~~ 106 (119)
T 1x6d_A 41 NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHD--------ALAILRQ-AREPRQAVIVTRKLTPE 106 (119)
T ss_dssp CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHH--------HHHHHHH-TTSSSEEEEEEECCCSS
T ss_pred CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHh-CCCCeEEEEEEcCCCcc
Confidence 35899999999999999 9 9999999999999998643311 2233433 24556678889988653
No 326
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=98.10 E-value=2.8e-06 Score=70.01 Aligned_cols=57 Identities=7% Similarity=0.028 Sum_probs=46.9
Q ss_pred ceEEEEe----ecCCcCCCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeEE
Q 008087 492 QMSSLLW----CLRSPLCLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQVV 548 (578)
Q Consensus 492 ~~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~~ 548 (578)
.++++.. ++|+++||++||+|++|||++|.+ +.++.+++++..+..+.+.+.|++..
T Consensus 27 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~ 89 (91)
T 1g9o_A 27 LGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDE 89 (91)
T ss_dssp SSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCCCSC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcCCccc
Confidence 3555554 489999999999999999999997 79999999988777777777777643
No 327
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=98.08 E-value=1e-06 Score=74.66 Aligned_cols=54 Identities=13% Similarity=0.266 Sum_probs=43.1
Q ss_pred CCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeC--CCCCCccccCcchhHHHHHhccCCCCEEEEEE
Q 008087 352 QKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIA--NDGTVPFRHGERIGFSYLVSQKYTGDSAAVKV 417 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~--~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V 417 (578)
..|++|..|.++|||++ ||++||+|++|||++|. ++.+ +..++... ++.+.|+|
T Consensus 47 ~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~----------~~~~l~~~--~~~v~l~v 103 (104)
T 2z17_A 47 EMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQ----------VVDLIRSS--GNLLTIET 103 (104)
T ss_dssp SCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCHHH----------HHHHHHHT--TTEEEEEC
T ss_pred CCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCCHHH----------HHHHHHhC--CCcEEEEE
Confidence 45899999999999999 99999999999999999 4444 44555554 34777765
No 328
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=98.08 E-value=3.1e-06 Score=69.44 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=45.1
Q ss_pred eEEEEe----ecCCcCCCCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPLCLNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
++++.. ++|+++||++||+|++|||++|. ++.++.+++++. ++.+.|++.|++.
T Consensus 28 ~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~~~ 87 (89)
T 2q3g_A 28 PLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRAC-GERLSLGLSRAIT 87 (89)
T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTC-TTEEEEEEEEECC
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEeCCC
Confidence 455554 47999999999999999999999 568888888875 6789999988764
No 329
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.07 E-value=1.8e-06 Score=82.13 Aligned_cols=60 Identities=28% Similarity=0.460 Sum_probs=51.1
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeC--CCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIA--NDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKIL 424 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~--~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~ 424 (578)
.|++|..|.++|||++ | |++||+|++|||++|. ++.+ +..++.. .++.+.|+|.|+++.+
T Consensus 135 ~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~----------~~~~l~~--~~~~v~l~v~R~~~~~ 198 (200)
T 2qt5_A 135 RPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAE----------AMSILKQ--CGQEATLLIEYDVSVM 198 (200)
T ss_dssp EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHH----------HHHHHHT--TCSEEEEEEEEEEEC-
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHH----------HHHHHHc--CCCeEEEEEEECCccC
Confidence 4899999999999999 9 9999999999999999 6655 4456655 6899999999987754
No 330
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=98.07 E-value=2.9e-06 Score=72.67 Aligned_cols=50 Identities=8% Similarity=0.087 Sum_probs=44.0
Q ss_pred EEeecCCcCCCCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecC
Q 008087 496 LLWCLRSPLCLNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYD 545 (578)
Q Consensus 496 vs~v~A~~aGl~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~ 545 (578)
..+++|+++||++||+|++|||++|. ++.++.+++++..++.+.|+|.|.
T Consensus 52 ~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~V~~~ 103 (109)
T 2vsv_A 52 DPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSL 103 (109)
T ss_dssp CTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESC
T ss_pred CCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEEC
Confidence 34568999999999999999999999 669999999988777799998775
No 331
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=1.7e-06 Score=74.75 Aligned_cols=57 Identities=19% Similarity=0.140 Sum_probs=44.8
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECC
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDS 421 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g 421 (578)
.|++|..|.++|||++ ||++||+|++|||++|.++..- .+..++. +..+.|+|.|..
T Consensus 44 ~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~--------~~~~~l~----~~~v~l~v~R~p 101 (114)
T 2d8i_A 44 RRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSS--------MLKDFLS----QPSLGLLVRTYP 101 (114)
T ss_dssp EEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHH--------HHHHHHT----SSEEEEEEEECC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHH--------HHHHHHh----CCcEEEEEEECC
Confidence 4799999999999999 9999999999999999986410 0233333 358888888854
No 332
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.06 E-value=1.2e-06 Score=75.30 Aligned_cols=56 Identities=25% Similarity=0.353 Sum_probs=45.6
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeC--CCCCCccccCcchhHHHHHhccCCCCEEEEEEEE
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIA--NDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLR 419 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~--~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R 419 (578)
.+++|..|.+++||++ ||++||+|++|||++|. +|.+ +..++... .++.+.|+|+|
T Consensus 36 ~~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d----------~~~~i~~~-~~~~v~l~V~~ 94 (111)
T 1vae_A 36 TPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSE----------VMKLLKSF-GGEEVEMKVVS 94 (111)
T ss_dssp SSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHH----------HHHHHHHT-TTSEECEEEEC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH----------HHHHHHhC-CCceEEEEEEe
Confidence 4788999999999999 99999999999999999 6665 44555543 45678888876
No 333
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=98.06 E-value=3.9e-06 Score=71.85 Aligned_cols=60 Identities=5% Similarity=-0.021 Sum_probs=49.8
Q ss_pred ceEEEEe----ecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhc-CCCeEEEEEecCeEEEEe
Q 008087 492 QMSSLLW----CLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENC-DDEFLKFDLEYDQVVVLR 551 (578)
Q Consensus 492 ~~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~-~~~~v~l~v~R~~~~~l~ 551 (578)
.++++.. ++|+++| |++||+|++|||++|.+ +.++.++++.. +++.+.|+|.|++..++.
T Consensus 39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~~~ 106 (111)
T 2koj_A 39 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAFHP 106 (111)
T ss_dssp SCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEEEEECCCCCCC
T ss_pred cCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCCCccc
Confidence 3565554 4899999 99999999999999965 69999999986 478999999998875543
No 334
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=98.06 E-value=5.9e-06 Score=70.56 Aligned_cols=56 Identities=5% Similarity=-0.104 Sum_probs=47.9
Q ss_pred ceEEEEee----cCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhc--CCCeEEEEEecCeE
Q 008087 492 QMSSLLWC----LRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENC--DDEFLKFDLEYDQV 547 (578)
Q Consensus 492 ~~vvvs~v----~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~--~~~~v~l~v~R~~~ 547 (578)
.+++|..+ +|+++| |+.||+|++|||+++.+ ++++.++|++. +.+.+.|+|.|.+.
T Consensus 33 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~~~ 97 (108)
T 3cbz_A 33 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGG 97 (108)
T ss_dssp CEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECCCC
T ss_pred CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEEEEeCCC
Confidence 45666654 799999 99999999999999998 99999999987 55679999988653
No 335
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=98.05 E-value=5.9e-06 Score=69.80 Aligned_cols=55 Identities=9% Similarity=0.023 Sum_probs=46.7
Q ss_pred CceEEEEee----cCCcCCCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecC
Q 008087 491 CQMSSLLWC----LRSPLCLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYD 545 (578)
Q Consensus 491 ~~~vvvs~v----~A~~aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~ 545 (578)
..++++..+ +|+++||++||+|++|||++|.+ ++++.++++..+++.+.|++.|+
T Consensus 44 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~ 104 (104)
T 3sfj_A 44 DKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 104 (104)
T ss_dssp CCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEEEEEEEC
T ss_pred CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEcC
Confidence 356766654 79999999999999999999965 67999999887788999998874
No 336
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=98.05 E-value=3.1e-06 Score=68.43 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=42.1
Q ss_pred EeecCCcCCCCCCCEEEEeCCeecCCH--HHHHHHHHhcCCCeEEEEEecC
Q 008087 497 LWCLRSPLCLNCFNKVLAFNGNPVKNL--KSLANMVENCDDEFLKFDLEYD 545 (578)
Q Consensus 497 s~v~A~~aGl~~GD~I~~VNG~~V~~~--~~l~~~l~~~~~~~v~l~v~R~ 545 (578)
.+++|+++||++||+|++|||++|.++ .++.+++++. ++.+.|++.|+
T Consensus 32 ~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~ 81 (83)
T 2kv8_A 32 RGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKC-SGVLHMVIAEG 81 (83)
T ss_dssp TTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTTC-SSCEEEEEECC
T ss_pred CCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEcC
Confidence 456899999999999999999999998 8999999765 45699999886
No 337
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=98.05 E-value=5.1e-06 Score=72.09 Aligned_cols=56 Identities=9% Similarity=0.087 Sum_probs=48.1
Q ss_pred ceEEEEee----cCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCeEE
Q 008087 492 QMSSLLWC----LRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQVV 548 (578)
Q Consensus 492 ~~vvvs~v----~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~~~ 548 (578)
.+++|..+ +|+++| |++||+|++|||++|. ++.++.+++++. ++.+.|+|.|++..
T Consensus 54 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~~~~ 116 (117)
T 2byg_A 54 NSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNT-SEVVYLKVGKPTTI 116 (117)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEEEEEC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCCcc
Confidence 45666654 799999 9999999999999999 899999999875 78899999998753
No 338
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=98.04 E-value=4.7e-06 Score=73.13 Aligned_cols=56 Identities=9% Similarity=-0.065 Sum_probs=47.4
Q ss_pred ceEEEEe----ecCCcCCCCCCCEEEEeCCeecCCH--HHHHHHHHh-cCCCeEEEEEecCeE
Q 008087 492 QMSSLLW----CLRSPLCLNCFNKVLAFNGNPVKNL--KSLANMVEN-CDDEFLKFDLEYDQV 547 (578)
Q Consensus 492 ~~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~~--~~l~~~l~~-~~~~~v~l~v~R~~~ 547 (578)
.+++|.. ++|+++||++||+|++|||++|.++ +++.++|.+ .+++.+.|++.|+++
T Consensus 51 ~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 113 (124)
T 3tsv_A 51 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKD 113 (124)
T ss_dssp SCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECHH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCc
Confidence 3565554 4899999999999999999999998 999998886 567899999988754
No 339
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=98.04 E-value=2.2e-06 Score=90.23 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=50.7
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.|++|..|.++|||++ ||++||+|++|||++|.+...- .+..++.....|+.+.|+|.|+|+
T Consensus 31 ~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~--------e~~~~l~~~~~g~~v~l~v~r~~~ 93 (391)
T 3tsz_A 31 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIRE--------EAVLFLLDLPKGEEVTILAQKKKD 93 (391)
T ss_dssp TEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHH--------HHHHHHHHSCTTSEEEEEEEECHH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHH--------HHHHHHHhhcCCCeEEEEEeeCCc
Confidence 5899999999999999 9999999999999999874221 034455554689999999999764
No 340
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=98.04 E-value=7.8e-06 Score=66.34 Aligned_cols=52 Identities=6% Similarity=0.004 Sum_probs=44.0
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhcC-CCeEEEEEec
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENCD-DEFLKFDLEY 544 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~~-~~~v~l~v~R 544 (578)
++++.. ++|+++| |++||+|++|||++|. ++.++.++++..+ ++.+.|++.|
T Consensus 26 ~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 85 (85)
T 2i04_A 26 FLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85 (85)
T ss_dssp CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence 455554 4899999 9999999999999999 5699999999875 7788888865
No 341
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.04 E-value=3.8e-06 Score=73.05 Aligned_cols=49 Identities=20% Similarity=0.385 Sum_probs=44.8
Q ss_pred eecCCcCCCCCCCEEEEeCCeecCCH--HHHHHHHHhcCCCeEEEEEecCeE
Q 008087 498 WCLRSPLCLNCFNKVLAFNGNPVKNL--KSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 498 ~v~A~~aGl~~GD~I~~VNG~~V~~~--~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
+++|+++||+.||+|++|||++|.++ ++|.++|+.. ++.+.|+|.|+++
T Consensus 56 ~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~-g~~v~l~v~R~g~ 106 (118)
T 2yub_A 56 ISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQT-SQTLQLLIEHDPV 106 (118)
T ss_dssp SCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCC-SSCEEEEEEECSS
T ss_pred CChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhC-CCEEEEEEEECCE
Confidence 35789999999999999999999999 9999999988 8899999998864
No 342
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.03 E-value=1.2e-05 Score=70.48 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=48.9
Q ss_pred ceEEEEe----ecCCcCCCCCCCEEEEeCCeecCCHHHHHHHHHh-cCCCeEEEEEecCeEEEEec
Q 008087 492 QMSSLLW----CLRSPLCLNCFNKVLAFNGNPVKNLKSLANMVEN-CDDEFLKFDLEYDQVVVLRT 552 (578)
Q Consensus 492 ~~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~~~~l~~~l~~-~~~~~v~l~v~R~~~~~l~~ 552 (578)
.++++.. ++|+++ |++||+|++|||++|.+|.+|.+++.. .+++.+.|++ |+++.-+..
T Consensus 25 ~gv~V~~V~~~spA~~a-L~~GD~Il~InG~~v~~~~dl~~~l~~~~~g~~v~l~V-R~g~~~v~l 88 (125)
T 2hga_A 25 DGVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITT-DQGTFHLKT 88 (125)
T ss_dssp CCEEEEEECSSSGGGGT-SCTTCEEEEETTEECSSHHHHHHHHTTCCTTCEEEEEE-TTEEEEEEC
T ss_pred CceEEEEECCCChHHHh-cCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEE-ECCEEEEEE
Confidence 4555554 489999 999999999999999999999999986 4688999999 998833333
No 343
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=98.03 E-value=6.7e-06 Score=69.35 Aligned_cols=55 Identities=5% Similarity=0.034 Sum_probs=45.8
Q ss_pred ceEEEEe----ecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 492 QMSSLLW----CLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 492 ~~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
.++++.. ++|+++| |++||+|++|||++|.+ +.++.++++...+ .+.|++.|...
T Consensus 39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~r~~~ 100 (103)
T 2fcf_A 39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGN-PVVFMVQSIIS 100 (103)
T ss_dssp --EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCS-SEEEEEECCCC
T ss_pred CCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC-cEEEEEEECCC
Confidence 3566554 4899999 99999999999999998 9999999998754 89999988653
No 344
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=98.02 E-value=5.4e-06 Score=69.40 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=44.3
Q ss_pred eEEEE----eecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecC
Q 008087 493 MSSLL----WCLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYD 545 (578)
Q Consensus 493 ~vvvs----~v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~ 545 (578)
++++. +++|+++| |++||+|++|||++|.+ ++++.++|+.. ++.+.|+|.+.
T Consensus 37 gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~-~~~v~L~V~~~ 95 (97)
T 2ejy_A 37 SCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET-KGMISLKVIPN 95 (97)
T ss_dssp CEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHC-CEEEEEEEECC
T ss_pred CEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 45555 45899999 99999999999999995 99999999986 56888888765
No 345
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=98.02 E-value=8.9e-06 Score=85.58 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=56.4
Q ss_pred CCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE---EEEEE
Q 008087 352 QKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK---ILNFN 427 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~---~~~~~ 427 (578)
..+++|..|.++|||++ ||++||+|++|||++|.++..- .+..++. ...|+++.|+|.|+|+ .++++
T Consensus 98 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~--------~~~~~l~-~~~g~~v~l~v~r~g~~~~~~~~~ 168 (388)
T 1fc6_A 98 GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLY--------DVSDLLQ-GEADSQVEVVLHAPGAPSNTRTLQ 168 (388)
T ss_dssp SSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHH--------HHHHHHC-BSTTCEEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHH--------HHHHHHh-cCCCCEEEEEEEeCCCCcceEEEE
Confidence 35899999999999999 9999999999999999997310 0334443 3578999999999998 66666
Q ss_pred EEec
Q 008087 428 ITLA 431 (578)
Q Consensus 428 v~l~ 431 (578)
++..
T Consensus 169 l~r~ 172 (388)
T 1fc6_A 169 LTRQ 172 (388)
T ss_dssp EECB
T ss_pred EEEc
Confidence 6544
No 346
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=98.02 E-value=7.4e-06 Score=68.59 Aligned_cols=49 Identities=8% Similarity=-0.025 Sum_probs=43.9
Q ss_pred eecCCcCCCCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 498 WCLRSPLCLNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 498 ~v~A~~aGl~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
+++|+++||+.||+|++|||++|. ++.++..+++ .+++.+.|++.|++.
T Consensus 44 ~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~ 94 (99)
T 3khf_A 44 GSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLL-KSGNKISLRTTALEN 94 (99)
T ss_dssp TSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEECSCS
T ss_pred CCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHh-cCCCEEEEEEEECCC
Confidence 458999999999999999999999 8999999999 467899999999754
No 347
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=98.01 E-value=1.2e-06 Score=84.38 Aligned_cols=60 Identities=27% Similarity=0.458 Sum_probs=50.8
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeC--CCCCCccccCcchhHHHHHhccCCCCEE-EEEEEECCEEE
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIA--NDGTVPFRHGERIGFSYLVSQKYTGDSA-AVKVLRDSKIL 424 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~--~~~~v~~~~~~~~~~~~~~~~~~~g~~v-~l~V~R~g~~~ 424 (578)
.|++|..|.++|||++ ||++||+|++|||++|. ++.+ +..++... |+.+ .|+|.|+|+..
T Consensus 33 ~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~d----------l~~~l~~~--g~~v~~l~V~R~g~~~ 96 (216)
T 2krg_A 33 PGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGD----------VVSAIRAG--GDETKLLVVDRETDEF 96 (216)
T ss_dssp CSCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHH----------HHHHHHHH--CSEEEEEECCHHHHHH
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHH----------HHHHHHhc--CCeEEEEEEEECCEEE
Confidence 4899999999999999 99999999999999999 6655 44555544 7888 89999988765
No 348
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.01 E-value=2.1e-06 Score=75.02 Aligned_cols=51 Identities=16% Similarity=0.303 Sum_probs=46.2
Q ss_pred eecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcC-CCeEEEEEecCeEE
Q 008087 498 WCLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCD-DEFLKFDLEYDQVV 548 (578)
Q Consensus 498 ~v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~-~~~v~l~v~R~~~~ 548 (578)
+++|+++| |++||+|++|||++|.+ ++++.++|+..+ ++.+.|+|.|++..
T Consensus 55 ~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~ 109 (122)
T 1v5q_A 55 DSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAE 109 (122)
T ss_dssp TSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEEEEECCC
T ss_pred CChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEECCcc
Confidence 45899999 99999999999999987 999999999887 88999999998653
No 349
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=98.01 E-value=8.3e-06 Score=69.91 Aligned_cols=55 Identities=13% Similarity=0.007 Sum_probs=48.3
Q ss_pred eEEEEe----ecCCcCCC-CCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPLCL-NCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~aGl-~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
++++.. ++|+++|| +.||+|++|||+++.+ ++++.++++..+++.+.|++.|+++
T Consensus 27 ~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~ 88 (112)
T 1qau_A 27 PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE 88 (112)
T ss_dssp CEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEECCT
T ss_pred CEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEEEeCCc
Confidence 455554 48999998 9999999999999999 9999999998888899999998763
No 350
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.01 E-value=1.1e-05 Score=67.90 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=45.5
Q ss_pred ceEEEEe----ecCCcCCCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCe
Q 008087 492 QMSSLLW----CLRSPLCLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 492 ~~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
.++++.. ++|+++||+.||+|++|||++|.+ +.++.+++++ .++.+.|++.|++
T Consensus 30 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~ 89 (102)
T 2d90_A 30 KGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTTLLVLDKE 89 (102)
T ss_dssp SSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHH-STTEEEEEECSTT
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECC
Confidence 4566664 489999999999999999999998 5899999987 4778999997753
No 351
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.01 E-value=4.6e-06 Score=70.50 Aligned_cols=50 Identities=8% Similarity=0.133 Sum_probs=44.0
Q ss_pred eecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcC-CCeEEEEEecCeE
Q 008087 498 WCLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCD-DEFLKFDLEYDQV 547 (578)
Q Consensus 498 ~v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~-~~~v~l~v~R~~~ 547 (578)
+++|+++| |++||+|++|||++|.+ +.++.++|+..+ ++.+.|+|.|++.
T Consensus 44 ~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 97 (103)
T 1uep_A 44 MGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVL 97 (103)
T ss_dssp TSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred CChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEeCCC
Confidence 45899999 99999999999999964 899999999875 7899999988753
No 352
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=98.01 E-value=7e-06 Score=71.61 Aligned_cols=55 Identities=5% Similarity=0.018 Sum_probs=47.0
Q ss_pred ceEEEEe----ecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcC-CCeEEEEEecCe
Q 008087 492 QMSSLLW----CLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCD-DEFLKFDLEYDQ 546 (578)
Q Consensus 492 ~~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~-~~~v~l~v~R~~ 546 (578)
.+++|.. ++|+++| |++||+|++|||++|.+ +.++.++++..+ ++.+.|+|.|++
T Consensus 58 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 120 (121)
T 2kom_A 58 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQE 120 (121)
T ss_dssp CCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEEEEECC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEeCC
Confidence 3466554 4899999 99999999999999998 699999999864 789999999875
No 353
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=98.01 E-value=6.5e-06 Score=71.40 Aligned_cols=55 Identities=9% Similarity=0.050 Sum_probs=46.9
Q ss_pred eEEEEee----cCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCeEE
Q 008087 493 MSSLLWC----LRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQVV 548 (578)
Q Consensus 493 ~vvvs~v----~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~~~ 548 (578)
+++|..+ +|+++| |++||+|++|||++|. ++.++.++++...+ .+.|+|.|+++.
T Consensus 54 gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~-~v~l~v~R~g~~ 115 (117)
T 2fne_A 54 PIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKG-TVTLMVLSSDET 115 (117)
T ss_dssp EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS-SEEEEEEECSCE
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-eEEEEEEeCCcc
Confidence 5666654 799999 9999999999999999 89999999998655 599999998754
No 354
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=97.99 E-value=1.6e-05 Score=66.96 Aligned_cols=53 Identities=11% Similarity=0.066 Sum_probs=45.4
Q ss_pred eEEEEe----ecCCc-CCCCCCCEEEEeCCeec--CCHHHHHHHHHhc-CCCeEEEEEecC
Q 008087 493 MSSLLW----CLRSP-LCLNCFNKVLAFNGNPV--KNLKSLANMVENC-DDEFLKFDLEYD 545 (578)
Q Consensus 493 ~vvvs~----v~A~~-aGl~~GD~I~~VNG~~V--~~~~~l~~~l~~~-~~~~v~l~v~R~ 545 (578)
++++.. ++|++ +||+.||+|++|||++| .+++++.++|+.. +++.+.|++.|.
T Consensus 38 ~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 98 (101)
T 2yt7_A 38 TAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHC 98 (101)
T ss_dssp CEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence 355554 47888 67999999999999999 8999999999986 678999999874
No 355
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=97.99 E-value=1e-05 Score=67.26 Aligned_cols=54 Identities=19% Similarity=0.119 Sum_probs=45.7
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
++++.. ++|+++| |+.||+|++|||++|. ++.++.++++. .++.+.|++.|++.
T Consensus 34 g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~ 94 (96)
T 1d5g_A 34 GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHLLLEKGQS 94 (96)
T ss_dssp CCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEEECCSC
T ss_pred CEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEcCCC
Confidence 455554 4799999 9999999999999999 67899999987 57889999988753
No 356
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=97.99 E-value=6.2e-06 Score=71.06 Aligned_cols=54 Identities=13% Similarity=0.022 Sum_probs=46.0
Q ss_pred ceEEEE----eecCCcCCCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCe
Q 008087 492 QMSSLL----WCLRSPLCLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 492 ~~vvvs----~v~A~~aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
.++++. +++|+++||++||+|++|||++|.+ +.++.+++++. ++.+.|++.|++
T Consensus 38 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~~ 97 (114)
T 2edz_A 38 DGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKS-GNSVTLLVLDGD 97 (114)
T ss_dssp CSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSSSCHHHHHHHHHHT-CSEEEEEEECHH
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEECC
Confidence 345555 4589999999999999999999987 49999999874 889999998875
No 357
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=97.99 E-value=6.1e-06 Score=67.31 Aligned_cols=57 Identities=18% Similarity=0.300 Sum_probs=43.6
Q ss_pred CCcEEEEeCCCCcccC--CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEE
Q 008087 353 KGVRIRRVDPTAPESE--VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLR 419 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~--GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R 419 (578)
.+++|..|.++|||++ ||++||+|++|||+++.++.... +..++. ..++.+.|+|.+
T Consensus 28 ~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~--------~~~~~~--~~~~~v~l~v~~ 86 (87)
T 4e34_A 28 VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKE--------AVTILS--QQRGEIEFEVVY 86 (87)
T ss_dssp EEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHH--------HHHHHH--HCCSEEEEEEEE
T ss_pred CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHH--cCCCeEEEEEEE
Confidence 4789999999999986 99999999999999998764311 223343 356788887754
No 358
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=97.98 E-value=1.2e-05 Score=66.88 Aligned_cols=52 Identities=12% Similarity=0.215 Sum_probs=44.6
Q ss_pred eEEEEe----ecCCcCCCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecC
Q 008087 493 MSSLLW----CLRSPLCLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYD 545 (578)
Q Consensus 493 ~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~ 545 (578)
++++.. ++|+++||++||+|++|||++|.+ ++++.++|+.. ++.+.|++.++
T Consensus 38 ~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~ 95 (96)
T 2ego_A 38 VTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKAS-GNVLRLETLYG 95 (96)
T ss_dssp EEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEEECC
T ss_pred CeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEEC
Confidence 455554 489999999999999999999998 69999999987 45899988775
No 359
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=97.98 E-value=6.5e-06 Score=71.22 Aligned_cols=55 Identities=9% Similarity=0.124 Sum_probs=48.0
Q ss_pred ceEEEEe----ecCCcCC-CCCCCEEEEeCCeecC---CHHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 492 QMSSLLW----CLRSPLC-LNCFNKVLAFNGNPVK---NLKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 492 ~~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~---~~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
.++++.. ++|+++| |++||+|++|||++|. ++.++.++++. .++.+.|++.|++.
T Consensus 49 ~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~R~~~ 111 (117)
T 2o2t_A 49 LGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQK-AKDTVQLVIARGSL 111 (117)
T ss_dssp EEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHH-CCSEEEEEEESSCC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc-CCCEEEEEEEeCCc
Confidence 4566665 4899999 9999999999999999 99999999987 57899999999864
No 360
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=97.98 E-value=4.6e-06 Score=69.51 Aligned_cols=57 Identities=7% Similarity=-0.012 Sum_probs=44.8
Q ss_pred ceEEEEe----ecCCcCCCCCCCEEEEeCCeecCCHHHHHHHHHh-cCCCeEEEEEecCeEE
Q 008087 492 QMSSLLW----CLRSPLCLNCFNKVLAFNGNPVKNLKSLANMVEN-CDDEFLKFDLEYDQVV 548 (578)
Q Consensus 492 ~~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~~~~l~~~l~~-~~~~~v~l~v~R~~~~ 548 (578)
.++++.. ++|+++||++||+|++|||++|.++.++..+... .+++.+.|++.|+++.
T Consensus 34 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~ 95 (97)
T 2w4f_A 34 EGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRERET 95 (97)
T ss_dssp CSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEECCSSC
T ss_pred CCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhCCCCeEEEEEEeCCcc
Confidence 4566654 4899999999999999999999998775443322 3688999999998753
No 361
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=97.98 E-value=2.9e-06 Score=68.93 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=41.3
Q ss_pred eecCCcCCCCCCCEEEEeCCeecCCH--HHHHHHHHhcCCCeEEEEEecCe
Q 008087 498 WCLRSPLCLNCFNKVLAFNGNPVKNL--KSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 498 ~v~A~~aGl~~GD~I~~VNG~~V~~~--~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
+++|+++||++||+|++|||+++.++ .++...++.. ++.+.|++.|++
T Consensus 35 ~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~ 84 (85)
T 1rgw_A 35 GSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA-SYNLSLTLQKSK 84 (85)
T ss_dssp TSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTC-SSCEEEEEESCC
T ss_pred CCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence 45899999999999999999999987 8888888765 456999999875
No 362
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.98 E-value=4.9e-06 Score=71.70 Aligned_cols=51 Identities=12% Similarity=0.157 Sum_probs=45.5
Q ss_pred EeecCCc-CCCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeEE
Q 008087 497 LWCLRSP-LCLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQVV 548 (578)
Q Consensus 497 s~v~A~~-aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~~ 548 (578)
.+++|++ +||++||+|++|||++|.+ ++++.++|++ .++.+.|+|.|++..
T Consensus 52 ~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~~ 105 (114)
T 1uew_A 52 DGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD-AGLSVTLRIIPQEEL 105 (114)
T ss_dssp TTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHH-TTTEEEEEECCCSCC
T ss_pred CCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCcC
Confidence 3458999 9999999999999999998 6999999998 788999999998653
No 363
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=97.97 E-value=8e-06 Score=77.82 Aligned_cols=59 Identities=19% Similarity=0.146 Sum_probs=47.0
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEEC
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRD 420 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~ 420 (578)
..|++|..|.++|+|++ | |++||+|++|||++|.++.... +..++. ..++.+.|+|.|.
T Consensus 135 ~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~--------~~~~l~--~~~~~v~L~V~R~ 195 (206)
T 3r0h_A 135 EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQV--------CYALFK--GANGKVSMEVTRP 195 (206)
T ss_dssp SSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHH--------HHHHHH--TCCSEEEEEEEEE
T ss_pred CceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHH--cCCCeEEEEEEeC
Confidence 35899999999999999 8 9999999999999999874311 223443 3567899999984
No 364
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.97 E-value=2.4e-06 Score=73.50 Aligned_cols=48 Identities=10% Similarity=0.142 Sum_probs=43.7
Q ss_pred eecCCcCCCCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecC
Q 008087 498 WCLRSPLCLNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYD 545 (578)
Q Consensus 498 ~v~A~~aGl~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~ 545 (578)
+++|+++||+.||+|++|||++|. +++++.++|++..++.+.|+|.|.
T Consensus 46 ~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~~ 95 (111)
T 1vae_A 46 HCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSL 95 (111)
T ss_dssp TSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEECE
T ss_pred CCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEec
Confidence 458999999999999999999999 999999999998888889988764
No 365
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=97.97 E-value=6.4e-06 Score=72.22 Aligned_cols=57 Identities=14% Similarity=0.192 Sum_probs=45.1
Q ss_pred CCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEE
Q 008087 353 KGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLR 419 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R 419 (578)
.+++|..|.++|||++ | |++||+|++|||+++.++.... +..++.. .++.+.|+|.|
T Consensus 45 ~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~--------~~~~l~~--~~~~v~l~v~r 103 (125)
T 3hpk_A 45 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVE--------VAKMIQE--VKGEVTIHYNK 103 (125)
T ss_dssp SSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHH--------HHHHHHH--SCSEEEEEEEE
T ss_pred CCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHc--CCCeEEEEEEE
Confidence 4799999999999999 9 9999999999999998653211 3344444 45679999987
No 366
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=97.97 E-value=1.8e-05 Score=81.18 Aligned_cols=83 Identities=12% Similarity=0.069 Sum_probs=63.8
Q ss_pred eccEEEeeh-HHHHHHhchhhhhhhhhccccccccccccCCCceEEEEee----cCCcCCCCCCCEEEEeCCeecCCHHH
Q 008087 451 IAGFVFSRC-LYLISVLSMERIMNMKLRSSFWTSSCIQCHNCQMSSLLWC----LRSPLCLNCFNKVLAFNGNPVKNLKS 525 (578)
Q Consensus 451 ~~Gl~~~~~-p~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~vvvs~v----~A~~aGl~~GD~I~~VNG~~V~~~~~ 525 (578)
+.|+.+..+ +.+...++... ..+ .+...++++..+ +|+++||++||+|++|||++|.++.+
T Consensus 228 ~lGv~~~~l~~~~~~~~~l~~------------~~~--~~~~~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~~~~ 293 (325)
T 1lcy_A 228 YIGVMMLTLSPSILAELQLRE------------PSF--PDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAED 293 (325)
T ss_dssp ECCEEEEECCHHHHHHHTTSC------------TTS--CCCSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHH
T ss_pred ccceEeecCCHHHHHhhCccc------------ccc--ccCCCCeEEEEeCcCChHHHCCCCCCCEEEEECCEEcCCHHH
Confidence 568888888 87777776211 000 011246766654 79999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEEecCeEEE
Q 008087 526 LANMVENCDDEFLKFDLEYDQVVV 549 (578)
Q Consensus 526 l~~~l~~~~~~~v~l~v~R~~~~~ 549 (578)
|.++|+. ++.+.|++.|+++.+
T Consensus 294 l~~~l~~--~~~v~l~v~R~g~~~ 315 (325)
T 1lcy_A 294 VYEAVRT--QSQLAVQIRRGRETL 315 (325)
T ss_dssp HHHHHTT--CSSEEEEEEETTEEE
T ss_pred HHHHHhC--CCeEEEEEEECCEEE
Confidence 9999986 578999999987654
No 367
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=97.96 E-value=6.7e-06 Score=76.22 Aligned_cols=59 Identities=12% Similarity=0.223 Sum_probs=47.4
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEEC
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRD 420 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~ 420 (578)
..|++|..|.++|||++ | |++||+|++|||+.|.++.... +..++.. .|..+.|+|.|+
T Consensus 110 ~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~--------~~~~l~~--~g~~v~L~V~R~ 170 (170)
T 3egg_C 110 KLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSF--------AASVLRN--TKGRVRFMIGRE 170 (170)
T ss_dssp SBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHH--------HHHHHHH--CCSEEEEEEEEC
T ss_pred CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHc--CCCEEEEEEEeC
Confidence 35899999999999999 9 9999999999999997654311 2334443 678999999985
No 368
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=97.96 E-value=3.9e-06 Score=79.56 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=50.1
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCC--CCCCccccCcchhHHHHHhccCCCCEEEEEEEECC
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIAN--DGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDS 421 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~--~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g 421 (578)
..|++|..|.++|||++ | |++||+|++|||+++.+ +.+ +..++... ++.+.|+|.|++
T Consensus 134 ~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~----------~~~~l~~~--~~~v~l~v~R~~ 195 (196)
T 1p1d_A 134 GDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMED----------AVQILQQC--EDLVKLKIRKDE 195 (196)
T ss_dssp TCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHH----------HHHHHHHC--TTCEEEEEECCC
T ss_pred CCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHH----------HHHHHHhC--CCEEEEEEEeCC
Confidence 35899999999999999 9 99999999999999998 555 45666654 889999999976
No 369
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.96 E-value=4.3e-06 Score=73.47 Aligned_cols=49 Identities=10% Similarity=0.021 Sum_probs=44.6
Q ss_pred EeecCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhc-CCCeEEEEEecC
Q 008087 497 LWCLRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENC-DDEFLKFDLEYD 545 (578)
Q Consensus 497 s~v~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~-~~~~v~l~v~R~ 545 (578)
.+++|+++| |+.||+|++|||++|. ++.++.++|+.. +++.+.|+|.|+
T Consensus 58 ~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~R~ 110 (126)
T 1wif_A 58 NKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRG 110 (126)
T ss_dssp TTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred CCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence 356899999 9999999999999995 899999999985 588999999998
No 370
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.96 E-value=8.6e-06 Score=68.36 Aligned_cols=53 Identities=11% Similarity=0.012 Sum_probs=44.5
Q ss_pred eEEEEe----ecCCcCCCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPLCLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
++++.. ++|+++||++||+|++|||++|.+ +.++.+.++. ++.+.|++.|+++
T Consensus 37 gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~--~~~v~l~v~R~g~ 95 (100)
T 2eeh_A 37 GIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS--SSRLHMMVRRMGS 95 (100)
T ss_dssp CEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS--CSSEEEEEEECSC
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC--CCEEEEEEEECCc
Confidence 465554 479999999999999999999998 5777777776 6889999999864
No 371
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.95 E-value=9.7e-06 Score=68.61 Aligned_cols=52 Identities=10% Similarity=0.020 Sum_probs=45.2
Q ss_pred eEEEEe----ecCCcCCCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCe
Q 008087 493 MSSLLW----CLRSPLCLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 493 ~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
+++|.. ++|+++||++||+|++|||++|.+ +.++.++++. ++.+.|+|.|+.
T Consensus 42 g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~--~~~v~l~v~r~~ 99 (104)
T 1wi2_A 42 GIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT--AREISMRVRFFS 99 (104)
T ss_dssp CCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH--SSSEEEEEECCC
T ss_pred CEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCEEEEEEEECC
Confidence 455554 479999999999999999999998 9999999998 678999998874
No 372
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=97.95 E-value=4.5e-06 Score=71.12 Aligned_cols=55 Identities=9% Similarity=-0.004 Sum_probs=46.8
Q ss_pred ceEEEEe----ecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 492 QMSSLLW----CLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 492 ~~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
.+++|.. ++|+++| |++||+|++|||++|.+ +.++.++++. .++.+.|++.|++.
T Consensus 44 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~ 105 (108)
T 2jre_A 44 TGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRN-AGNPVRLLLIRRLP 105 (108)
T ss_dssp CCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHH-HCSEEEEEEEECCC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCc
Confidence 3565554 4799999 99999999999999998 7899999987 67889999988864
No 373
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=97.95 E-value=1.3e-05 Score=66.39 Aligned_cols=54 Identities=9% Similarity=0.084 Sum_probs=44.8
Q ss_pred ceEEEEee----cCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCe
Q 008087 492 QMSSLLWC----LRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 492 ~~vvvs~v----~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
.++++..+ +|+++| |++||+|++|||++|.+ +.++..+++... +.+.|++.|++
T Consensus 33 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~g 93 (94)
T 2fe5_A 33 NSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTS-DMVYLKVAKPG 93 (94)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCC-SEEEEEEECCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEcCC
Confidence 45666654 799999 99999999999999987 578888888654 58999998875
No 374
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=97.95 E-value=6.7e-06 Score=68.18 Aligned_cols=56 Identities=18% Similarity=0.149 Sum_probs=42.6
Q ss_pred eEEEEe----ecCCcCCCCCCCEEEEeCCeecCCH--HHHHHHHHhcCCCeEEEEEecCeEE
Q 008087 493 MSSLLW----CLRSPLCLNCFNKVLAFNGNPVKNL--KSLANMVENCDDEFLKFDLEYDQVV 548 (578)
Q Consensus 493 ~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~~--~~l~~~l~~~~~~~v~l~v~R~~~~ 548 (578)
++++.. ++|+++||+.||+|++|||++|.++ .++.++|+...+..+.+.+.+++..
T Consensus 30 ~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~r~~~~~ 91 (95)
T 3r68_A 30 GQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKELER 91 (95)
T ss_dssp SEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEECC---
T ss_pred CEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEECCcccc
Confidence 455554 5899999999999999999999988 9999999986555555555555443
No 375
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=97.95 E-value=1.5e-05 Score=68.38 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=48.0
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEE
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKIL 424 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~ 424 (578)
.|..|..|.+ ++.. ||++||+|++|||++|.+...-. +..++.....|+.+.|+|.|+|...
T Consensus 34 ~g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~e--------vv~~lk~~~~G~~v~L~V~R~g~~~ 96 (113)
T 3soe_A 34 TGQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQ--------VVEVLKQFPVGADVPLLILRGGPPS 96 (113)
T ss_dssp TEEEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHH--------HHHHHHHSCTTCEEEEEEEESSCC-
T ss_pred CCcEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHcCCCCCEEEEEEEECCccC
Confidence 3666888877 5667 99999999999999999765211 4466766667999999999988643
No 376
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.95 E-value=4.4e-06 Score=69.34 Aligned_cols=49 Identities=12% Similarity=0.084 Sum_probs=42.0
Q ss_pred eecCCcCCCCCCCEEEEeCCeecCCH--HHHHHHHHhcCCCeEEEEEecCeE
Q 008087 498 WCLRSPLCLNCFNKVLAFNGNPVKNL--KSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 498 ~v~A~~aGl~~GD~I~~VNG~~V~~~--~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
+++|+++||++||+|++|||++|.++ .++...++. .++.+.|++.|++.
T Consensus 42 ~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~ 92 (94)
T 2eeg_A 42 GSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKG-CHDHLTLSVSSGPS 92 (94)
T ss_dssp SSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHT-CCSCEEEEEECCSS
T ss_pred CCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence 45899999999999999999999985 777778876 57789999998763
No 377
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=97.95 E-value=8.3e-06 Score=68.28 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=41.8
Q ss_pred EeecCCcCCCCCCCEEEEeCCeecC--CHHHHHHHHHhc--CCCeEEEEEe
Q 008087 497 LWCLRSPLCLNCFNKVLAFNGNPVK--NLKSLANMVENC--DDEFLKFDLE 543 (578)
Q Consensus 497 s~v~A~~aGl~~GD~I~~VNG~~V~--~~~~l~~~l~~~--~~~~v~l~v~ 543 (578)
.+++|++|||++||+|++|||++|. +|+++.+.++++ +++.+.|.|.
T Consensus 48 ~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~ 98 (101)
T 3qik_A 48 RGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVA 98 (101)
T ss_dssp TTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEe
Confidence 3558999999999999999999984 999999999984 7888888874
No 378
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.94 E-value=1.5e-06 Score=75.60 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=45.9
Q ss_pred CcEEEEeCCCCcccC--CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccC--CCCEEEEEEEEC
Q 008087 354 GVRIRRVDPTAPESE--VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKY--TGDSAAVKVLRD 420 (578)
Q Consensus 354 Gv~V~~V~p~spA~~--GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~--~g~~v~l~V~R~ 420 (578)
.++|..|.++|||++ ||++||+|++|||+++.++..-. +..++.... .|+.++|+|.|.
T Consensus 44 ~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~--------~~~~l~~~~~~~g~~v~l~v~r~ 106 (118)
T 1v6b_A 44 KVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAE--------AEAALQKAWNQGGDWIDLVVAVC 106 (118)
T ss_dssp SEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHH--------HHHHHHHHHHHTCSEEEEEEECC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHHhhhcCCCeEEEEEEeC
Confidence 489999999999987 79999999999999999864100 234444332 388999999984
No 379
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=97.94 E-value=4e-06 Score=71.56 Aligned_cols=60 Identities=12% Similarity=0.111 Sum_probs=46.1
Q ss_pred CCCcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEEC
Q 008087 352 QKGVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRD 420 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~ 420 (578)
..|++|..|.++|||++ | |++||+|++|||+++.++..-. +..++... .++.+.|+|.|.
T Consensus 43 ~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~--------~~~~l~~~-~~~~v~l~v~R~ 104 (108)
T 2d92_A 43 RSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAE--------AVEILKAV-PPGLVHLGICSG 104 (108)
T ss_dssp CEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHH--------HHHHHHHS-CSEEEEEEEECC
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHhC-CCCeEEEEEEcC
Confidence 35899999999999999 9 9999999999999998743210 23444432 356899999874
No 380
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.94 E-value=1.3e-05 Score=68.43 Aligned_cols=55 Identities=7% Similarity=0.026 Sum_probs=43.8
Q ss_pred ceEEEEe----ecCCcCCCCCCCEEEEeCCeecCCH--HHHHHHHHhcCCCeEEEEEecCeE
Q 008087 492 QMSSLLW----CLRSPLCLNCFNKVLAFNGNPVKNL--KSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 492 ~~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~~--~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
.+++|.. ++|+++||++||+|++|||++|.++ .+....++. +++.+.|+|.|+++
T Consensus 46 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~ 106 (110)
T 1x5q_A 46 EGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTAVQMRVWRESG 106 (110)
T ss_dssp CSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEEEECSS
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhC-CCCeEEEEEEECCc
Confidence 4566655 4899999999999999999999985 444455554 78899999999864
No 381
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.94 E-value=5.3e-06 Score=68.45 Aligned_cols=48 Identities=8% Similarity=0.087 Sum_probs=42.0
Q ss_pred EeecCCcCCCCCCCEEEEeCCeec--CCHHHHHHHHHhcCCCeEEEEEecC
Q 008087 497 LWCLRSPLCLNCFNKVLAFNGNPV--KNLKSLANMVENCDDEFLKFDLEYD 545 (578)
Q Consensus 497 s~v~A~~aGl~~GD~I~~VNG~~V--~~~~~l~~~l~~~~~~~v~l~v~R~ 545 (578)
.+++|+++||+.||+|++|||++| .++.++.++|++. ++.+.|++.+.
T Consensus 40 ~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~p~ 89 (90)
T 1y7n_A 40 RGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNA-VGEIHMKTMPA 89 (90)
T ss_dssp TTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHC-CEEEEEEEECC
T ss_pred CCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 356899999999999999999999 5899999999964 77888888754
No 382
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=97.94 E-value=1.2e-05 Score=68.45 Aligned_cols=54 Identities=6% Similarity=0.039 Sum_probs=46.7
Q ss_pred ceEEEEe----ecCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecC
Q 008087 492 QMSSLLW----CLRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYD 545 (578)
Q Consensus 492 ~~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~ 545 (578)
.++++.. ++|+++| |++||+|++|||++|. +++++.++|+..+++.+.|+|.|.
T Consensus 44 ~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~ 104 (108)
T 2d92_A 44 SVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSG 104 (108)
T ss_dssp EEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcC
Confidence 4566665 4799999 9999999999999996 489999999998778899999885
No 383
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=97.93 E-value=5.7e-06 Score=68.21 Aligned_cols=50 Identities=18% Similarity=0.138 Sum_probs=41.8
Q ss_pred eecCCcCCCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeEE
Q 008087 498 WCLRSPLCLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQVV 548 (578)
Q Consensus 498 ~v~A~~aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~~ 548 (578)
+++|+++||+.||+|++|||++|.+ +.++.+++++. ++.+.|++.|++..
T Consensus 34 ~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~~~ 85 (91)
T 2f5y_A 34 GGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC-PSEIILLVWRMVPQ 85 (91)
T ss_dssp TSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-SSEEEEEEEECC--
T ss_pred CCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCCCC
Confidence 4589999999999999999999995 68899999874 45799999987654
No 384
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=97.93 E-value=1.3e-05 Score=70.13 Aligned_cols=54 Identities=6% Similarity=0.033 Sum_probs=46.0
Q ss_pred ceEEEEe----ecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCe
Q 008087 492 QMSSLLW----CLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 492 ~~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
.+++|.. ++|+++| |++||+|++|||++|.+ ++++.++|+... +.+.|+|.|..
T Consensus 59 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~~ 119 (123)
T 2iwq_A 59 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAG-NPVVFMVQSII 119 (123)
T ss_dssp CSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SSEEEEEECCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECC
Confidence 3566654 4899999 99999999999999998 999999999874 48999998864
No 385
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.93 E-value=1e-05 Score=69.19 Aligned_cols=55 Identities=4% Similarity=-0.030 Sum_probs=47.9
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcC---CCeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCD---DEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~---~~~v~l~v~R~~~ 547 (578)
+++|.. ++|+++| |+.||+|++|||+++.+ ++++.++|++.+ +..+.|.+.|++.
T Consensus 42 ~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R~~~ 106 (109)
T 1wi4_A 42 LVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSGP 106 (109)
T ss_dssp SEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEECCCC
T ss_pred CEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEeCCC
Confidence 355554 4899999 99999999999999986 999999999988 8899999999753
No 386
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=97.93 E-value=7.4e-06 Score=72.03 Aligned_cols=55 Identities=9% Similarity=0.060 Sum_probs=48.3
Q ss_pred eEEEEe----ecCCcCCCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPLCLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
++++.. ++|+++||+.||+|++|||++|.+ +.++.++++...+..+.|.+.|++.
T Consensus 34 gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~ 94 (128)
T 2kjd_A 34 GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD 94 (128)
T ss_dssp SEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEECHHHH
T ss_pred CEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEeCCc
Confidence 565554 479999999999999999999999 9999999999877888899988764
No 387
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=97.93 E-value=2e-05 Score=67.71 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=45.8
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeEE
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQVV 548 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~~ 548 (578)
+++|.. ++|+++| |++||+|++|||++|.+ +.++..+++. .++.+.|+|.|++..
T Consensus 50 gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~ 111 (112)
T 2r4h_A 50 DLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKN-GGRRVRLFLKRGETS 111 (112)
T ss_dssp CEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHT-TTTEEEEEEECCEEE
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCcc
Confidence 455554 4899999 99999999999999976 5788888886 577899999998764
No 388
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=97.93 E-value=5.4e-06 Score=70.36 Aligned_cols=53 Identities=13% Similarity=0.024 Sum_probs=44.4
Q ss_pred eEEEE----eecCCcCCCCCCCEEEEeCCeecCCHH--HHHHHHHhcCCCeEEEEEecCe
Q 008087 493 MSSLL----WCLRSPLCLNCFNKVLAFNGNPVKNLK--SLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 493 ~vvvs----~v~A~~aGl~~GD~I~~VNG~~V~~~~--~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
++++. +++|+++||+.||+|++|||++|.++. ++.+++++ .++.+.|++.|++
T Consensus 27 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~ 85 (106)
T 3ngh_A 27 GHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRK-SGNSVTLLVLDGD 85 (106)
T ss_dssp SCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHHH-TTTEEEEEEECHH
T ss_pred CEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCEEEEEEEECC
Confidence 45555 458999999999999999999999876 99999984 5778999998764
No 389
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=97.92 E-value=2.4e-05 Score=67.13 Aligned_cols=48 Identities=4% Similarity=-0.110 Sum_probs=43.1
Q ss_pred cCCcCCCCCCCEEEEeCCeecC--CHHHHHHHHHhcC-CCeEEEEEecCeE
Q 008087 500 LRSPLCLNCFNKVLAFNGNPVK--NLKSLANMVENCD-DEFLKFDLEYDQV 547 (578)
Q Consensus 500 ~A~~aGl~~GD~I~~VNG~~V~--~~~~l~~~l~~~~-~~~v~l~v~R~~~ 547 (578)
+++.+||++||+|++|||++|. ++++++++|++++ +..+.|+|.|++.
T Consensus 44 ~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~ 94 (113)
T 3soe_A 44 SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGP 94 (113)
T ss_dssp GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESSC
T ss_pred hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCc
Confidence 5788999999999999999999 5689999999876 7799999999874
No 390
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=97.92 E-value=1.1e-05 Score=67.79 Aligned_cols=55 Identities=11% Similarity=-0.018 Sum_probs=46.6
Q ss_pred ceEEEEee----cCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 492 QMSSLLWC----LRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 492 ~~vvvs~v----~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
.++++..+ +|+++| |++||+|++|||++|.+ +.++..+++. .++.+.|++.|++.
T Consensus 34 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~ 95 (102)
T 2i1n_A 34 PGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKE-AGPVVRLVVRRRQP 95 (102)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEEECC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence 46766654 799999 99999999999999986 8888888887 57889999988764
No 391
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=97.91 E-value=7.1e-06 Score=66.36 Aligned_cols=54 Identities=11% Similarity=0.217 Sum_probs=42.7
Q ss_pred EEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEE
Q 008087 356 RIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLR 419 (578)
Q Consensus 356 ~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R 419 (578)
.|..|.+++||++ ||+.||+|++|||+.+.....-. +..++. ..|.+++|+|..
T Consensus 26 ~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~e--------vv~llr--~~g~~V~L~v~p 80 (82)
T 1r6j_A 26 KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQ--------IADILS--TSGTVVTITIMP 80 (82)
T ss_dssp EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHH--------HHHHHH--HSCSEEEEEEEE
T ss_pred EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH--------HHHHHh--cCCCEEEEEEEe
Confidence 3789999999999 99999999999999998875311 234444 468889998864
No 392
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=97.91 E-value=1e-05 Score=71.34 Aligned_cols=55 Identities=9% Similarity=0.120 Sum_probs=48.4
Q ss_pred ceEEEEee----cCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 492 QMSSLLWC----LRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 492 ~~vvvs~v----~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
.++++..+ +|+++| |++||+|++|||++|.+ +.++.++|+. .++.+.|+|.|++.
T Consensus 46 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~ 107 (129)
T 2dmz_A 46 SGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN-AGQVVHLTLVRRKT 107 (129)
T ss_dssp CEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHH-CCSSEEEEEEEESS
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCc
Confidence 46666654 799999 99999999999999998 9999999998 78899999988764
No 393
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.90 E-value=8.9e-06 Score=68.68 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=45.0
Q ss_pred eEEEEe----ecCCcCCCCCCCEEEEeCCeecCCH--HHHHHHHHhcCCCeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPLCLNCFNKVLAFNGNPVKNL--KSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~~--~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
++++.. ++|+++||++||+|++|||++|.++ .++..++++. ++.+.|++.|+++
T Consensus 30 ~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~g~ 89 (103)
T 1wf7_A 30 PLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKAC-TGSLNMTLQRASA 89 (103)
T ss_dssp EEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHC-SSEEEEEECCCSC
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCCC
Confidence 355544 5899999999999999999999987 7777888765 7789999999875
No 394
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.90 E-value=1e-05 Score=68.56 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=46.1
Q ss_pred ceEEEEe----ecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCe
Q 008087 492 QMSSLLW----CLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 492 ~~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
.+++|.. ++|+++| |++||+|++|||++|.+ +.++.+++++. ++.+.|+|.|+.
T Consensus 38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~~ 98 (105)
T 1wha_A 38 AGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA-SPTIALLLEREA 98 (105)
T ss_dssp CSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC-CSCEEEEEEECC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence 3566654 4899999 99999999999999987 89999999876 778999998874
No 395
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=97.90 E-value=1.5e-05 Score=66.46 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=43.1
Q ss_pred eecCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 498 WCLRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 498 ~v~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
+++|+++| |++||+|++|||++|. ++.++.++++ ..++.+.|++.|++.
T Consensus 40 ~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~-~~g~~v~l~v~R~~~ 91 (97)
T 1n7e_A 40 GGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ-MAGETVTLKIKKQTD 91 (97)
T ss_dssp TSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEEECCCC
T ss_pred CCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEeCCC
Confidence 45899999 9999999999999997 4799999998 467899999998864
No 396
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.90 E-value=4.7e-06 Score=70.08 Aligned_cols=49 Identities=18% Similarity=0.161 Sum_probs=42.1
Q ss_pred EeecCCcCCCCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCe
Q 008087 497 LWCLRSPLCLNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 497 s~v~A~~aGl~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
.+++|+++||++||+|++|||++|. ++.++.++++...+ .+.|+|.|+.
T Consensus 45 ~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~-~v~l~v~R~~ 95 (100)
T 1whd_A 45 SGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPS-EIILLVWRVS 95 (100)
T ss_dssp TTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHCSS-EEEEEEEECC
T ss_pred CCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-eEEEEEEECC
Confidence 4568999999999999999999999 56999999988654 4999998874
No 397
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.90 E-value=9.5e-06 Score=68.55 Aligned_cols=49 Identities=12% Similarity=0.035 Sum_probs=43.0
Q ss_pred eecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 498 WCLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 498 ~v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
+++|+++| |+.||+|++|||++|.+ +.++.++++. .++.+.|+|.|+++
T Consensus 48 ~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~ 99 (104)
T 2djt_A 48 DGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRA-GGPQLHLVIRRPLS 99 (104)
T ss_dssp TCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHH-TCSEEEEEECCCCC
T ss_pred CCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCC
Confidence 45899999 99999999999999987 6888888887 67899999999864
No 398
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=97.89 E-value=1.8e-05 Score=65.40 Aligned_cols=54 Identities=11% Similarity=0.138 Sum_probs=44.7
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeec--CCHHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPV--KNLKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V--~~~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
++++.. ++|+++| |+.||+|++|||++| .+++++.++|++..+ .+.|++.+...
T Consensus 29 ~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~~~~~ 89 (93)
T 3o46_A 29 AIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQG-AITFKIIPGSK 89 (93)
T ss_dssp CEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCE-EEEEEEECC--
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC-eEEEEEEeCCC
Confidence 455554 5899999 999999999999999 899999999998765 88999887643
No 399
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.89 E-value=1.1e-05 Score=69.96 Aligned_cols=55 Identities=13% Similarity=0.107 Sum_probs=46.8
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeEE
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQVV 548 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~~ 548 (578)
++++.. ++|+++| |++||+|++|||++|.+ +.++.+++++ .++.+.|+|.|++..
T Consensus 50 g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~ 111 (117)
T 1ujd_A 50 GAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQ-QSGEAEICVRLDLNM 111 (117)
T ss_dssp EEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSC-CSSCEEEEEESSCCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc-CCCEEEEEEEECCcc
Confidence 566665 4799999 99999999999999975 7899999987 567899999998754
No 400
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=97.89 E-value=1.5e-05 Score=70.63 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=46.8
Q ss_pred eEEEEee----cCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhc-CCCeEEEEEecCe
Q 008087 493 MSSLLWC----LRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENC-DDEFLKFDLEYDQ 546 (578)
Q Consensus 493 ~vvvs~v----~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~-~~~~v~l~v~R~~ 546 (578)
+++|..+ +|+++| |++||+|++|||++|.+ ++++.++|++. +++.+.|+|.|++
T Consensus 66 gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 127 (131)
T 1wfg_A 66 CAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSG 127 (131)
T ss_dssp EEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEEC
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcCC
Confidence 5666654 799999 99999999999999974 69999999987 6789999998864
No 401
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=97.88 E-value=1.2e-05 Score=67.59 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=45.2
Q ss_pred ceEEEEee----cCCcCC-CCCCCEEEEeCCeecCCH--HHHHHHHHhcCCCeEEEEEecCeE
Q 008087 492 QMSSLLWC----LRSPLC-LNCFNKVLAFNGNPVKNL--KSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 492 ~~vvvs~v----~A~~aG-l~~GD~I~~VNG~~V~~~--~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
.++++..+ +|+++| |+.||+|++|||++|.++ .++.+++++. ++.+.|+|.|+++
T Consensus 37 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~~~ 98 (101)
T 2jik_A 37 SGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA-GYAVSLRVQHRLE 98 (101)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTC-CSEEEEEEEEESC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeCCC
Confidence 45666654 799999 999999999999999874 7888888864 6789999988753
No 402
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=97.88 E-value=1.6e-05 Score=70.20 Aligned_cols=58 Identities=5% Similarity=-0.004 Sum_probs=48.6
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhcC-CCeEEEEEecCeEEEE
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENCD-DEFLKFDLEYDQVVVL 550 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~~-~~~v~l~v~R~~~~~l 550 (578)
+++|.. ++|+++| |+.||+|++|||++|. ++.++.++|+..+ ++.+.|+|.|+...-.
T Consensus 44 ~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~~ 109 (129)
T 2kpk_A 44 FLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPF 109 (129)
T ss_dssp EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEECSCCSS
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCCCCC
Confidence 355554 4899999 9999999999999998 5789999999987 7889999999875333
No 403
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=97.88 E-value=1.2e-05 Score=67.90 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=45.7
Q ss_pred CCcEEEEeCCCCcccC--CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE--VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~--GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.|++|..|.++|||++ ||++||+|++|||+++.+..... +..++.. .++++.|+|.|...
T Consensus 35 ~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~--------~~~~l~~--~~~~v~l~v~~~~~ 96 (103)
T 2dc2_A 35 VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKE--------AVTILSQ--QRGEIEFEVVYVAL 96 (103)
T ss_dssp EEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHH--------HHHHHHH--CCSEEEEEEEECC-
T ss_pred CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHh--CCCcEEEEEEecCC
Confidence 3799999999999987 89999999999999998753210 2233333 45689999998654
No 404
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=97.88 E-value=2.3e-05 Score=64.81 Aligned_cols=48 Identities=10% Similarity=0.141 Sum_probs=39.3
Q ss_pred EeecCCcCCCCCCCEEEEeCCeecCCHHH--HHHHHHhcCCCeEEEEEecCe
Q 008087 497 LWCLRSPLCLNCFNKVLAFNGNPVKNLKS--LANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 497 s~v~A~~aGl~~GD~I~~VNG~~V~~~~~--l~~~l~~~~~~~v~l~v~R~~ 546 (578)
.+++|+++||+.||+|++|||++|.++.+ +.+.++ +++.+.|+|.|++
T Consensus 38 ~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~--~g~~v~l~v~R~~ 87 (93)
T 2dls_A 38 PGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK--SGAYVALTLLGSS 87 (93)
T ss_dssp SSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHT--SSSEEEEEEECCC
T ss_pred CCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhc--CCCEEEEEEEECC
Confidence 35689999999999999999999998644 444444 5789999999875
No 405
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=97.88 E-value=1e-05 Score=66.43 Aligned_cols=54 Identities=9% Similarity=0.177 Sum_probs=44.8
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeec--CCHHHHHHHHHhcCC-CeEEEEEecCe
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPV--KNLKSLANMVENCDD-EFLKFDLEYDQ 546 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V--~~~~~l~~~l~~~~~-~~v~l~v~R~~ 546 (578)
++++.. ++|+++| |++||+|++|||++| .++.++.+++++.++ +.+.|++.|..
T Consensus 28 ~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~v~R~~ 89 (90)
T 2q9v_A 28 PIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQTR 89 (90)
T ss_dssp CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEECC
T ss_pred CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEecc
Confidence 355554 5899999 999999999999999 579999999998764 48999998763
No 406
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=97.87 E-value=1.8e-05 Score=67.54 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=44.2
Q ss_pred eEEEEee----cCCcCCCCCCCEEEEeCCeecCCH--HHHHHHHHhcCCCeEEEEEecC
Q 008087 493 MSSLLWC----LRSPLCLNCFNKVLAFNGNPVKNL--KSLANMVENCDDEFLKFDLEYD 545 (578)
Q Consensus 493 ~vvvs~v----~A~~aGl~~GD~I~~VNG~~V~~~--~~l~~~l~~~~~~~v~l~v~R~ 545 (578)
++++..+ +|+++||+.||+|++|||++|.++ .++.++++.. ++.+.|++.|.
T Consensus 46 gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~ 103 (109)
T 1q3o_A 46 LQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQG-GNTLMVKVVMV 103 (109)
T ss_dssp SEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEEEEE
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEEC
Confidence 5666654 799999999999999999999999 9999999875 67788888664
No 407
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=97.87 E-value=2e-05 Score=66.68 Aligned_cols=57 Identities=12% Similarity=0.100 Sum_probs=45.8
Q ss_pred ceEEEEee----cCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeEEE
Q 008087 492 QMSSLLWC----LRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQVVV 549 (578)
Q Consensus 492 ~~vvvs~v----~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~~~ 549 (578)
.+++|..+ +|+++| |+.||+|++|||++|.+ +.++...+++. ++.+.|++.|++...
T Consensus 33 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~~~~ 96 (105)
T 2awx_A 33 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNT-SDFVYLKVAKPTSMY 96 (105)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSC-CSEEEEEEECCCC--
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEcCCCCC
Confidence 45666654 799999 99999999999999975 77788888765 688999999986543
No 408
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=97.86 E-value=1.1e-05 Score=66.91 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=45.3
Q ss_pred ceEEEEe----ecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeEE
Q 008087 492 QMSSLLW----CLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQVV 548 (578)
Q Consensus 492 ~~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~~ 548 (578)
.++++.. ++|+++| |++||+|++|||++|.+ +.+....+++ .++.+.|++.|++..
T Consensus 29 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~~ 91 (95)
T 2vwr_A 29 PGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQA-SGERVNLTIARPGKP 91 (95)
T ss_dssp CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEEEESCS
T ss_pred CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEcCCcC
Confidence 3566665 4799999 99999999999999976 6777777775 478899999987654
No 409
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.86 E-value=7.7e-06 Score=71.00 Aligned_cols=62 Identities=19% Similarity=0.263 Sum_probs=46.4
Q ss_pred CCcEEEEeCCCCcccC---CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCC--CCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE---VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYT--GDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~---GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~--g~~v~l~V~R~g~ 422 (578)
.|++|..|.++|||++ ||++||+|++|||++|.++.... +..++..... +..+.|+|.|+..
T Consensus 41 ~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~--------~~~~~~~~~~~~~~~v~l~v~R~~~ 107 (119)
T 2cs5_A 41 MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQ--------VVLFIKASCERHSGELMLLVRPNAV 107 (119)
T ss_dssp EEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHH--------HHHHHHHHHHCCSSCEEEEEECCCC
T ss_pred CCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHH--------HHHHHHhccccCCCEEEEEEEcccc
Confidence 3799999999999987 89999999999999998864311 2233333211 3579999999754
No 410
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=1.7e-05 Score=65.44 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=43.8
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeec-CCHHHHHHHHHhcCCCeEEEEEecC
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPV-KNLKSLANMVENCDDEFLKFDLEYD 545 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V-~~~~~l~~~l~~~~~~~v~l~v~R~ 545 (578)
++++.. ++|+++| |+.||+|++|||++| .+++++.++|+.. ++.+.|++.|.
T Consensus 30 ~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v~~~~~~~~~~l~~~-~~~v~l~v~~~ 87 (91)
T 2e7k_A 30 ELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPRALQELLRNA-SGSVILKILSG 87 (91)
T ss_dssp SEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCHHHHHHHHHTC-CSSBCEEEECC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 455554 4799976 999999999999999 9999999999985 56788888765
No 411
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=97.85 E-value=1.8e-05 Score=67.12 Aligned_cols=56 Identities=11% Similarity=-0.028 Sum_probs=45.0
Q ss_pred ceEEEEee----cCCcCCCCCCCEEEEeCCeecCCHHHHHHHHHh-cCCCeEEEEEecCeEE
Q 008087 492 QMSSLLWC----LRSPLCLNCFNKVLAFNGNPVKNLKSLANMVEN-CDDEFLKFDLEYDQVV 548 (578)
Q Consensus 492 ~~vvvs~v----~A~~aGl~~GD~I~~VNG~~V~~~~~l~~~l~~-~~~~~v~l~v~R~~~~ 548 (578)
.++++..+ +|+ +||++||+|++|||++|.++.++..++.. ..++.+.|++.|++..
T Consensus 39 ~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~ 99 (107)
T 2h2b_A 39 TSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGG 99 (107)
T ss_dssp CCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEESCC
T ss_pred CCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCccHHHHHHHhhCCCCEEEEEEEECCCC
Confidence 45666654 788 99999999999999999999887766544 3578899999887653
No 412
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.85 E-value=1.8e-05 Score=68.05 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=45.9
Q ss_pred eEEEEe----ecCCcCCC-CCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPLCL-NCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~aGl-~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
+++|.. ++|+++|| +.||+|++|||++|. +++++.++|+... +.+.|++.|+++
T Consensus 49 gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~~~ 109 (113)
T 1va8_A 49 SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH-GTLTFVLIPSSG 109 (113)
T ss_dssp SEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-EEEEEEEECCCC
T ss_pred CEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECCc
Confidence 455554 48999999 999999999999999 7889999998765 579999988764
No 413
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=97.85 E-value=2.5e-05 Score=66.36 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=45.4
Q ss_pred ceEEEEee----cCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCe
Q 008087 492 QMSSLLWC----LRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 492 ~~vvvs~v----~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
.++++..+ +|+++| |+.||+|++|||++|. ++.++..++++. ++.+.|++.|++
T Consensus 32 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~ 92 (106)
T 4amh_A 32 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNT-SDFVYLKVAKPG 92 (106)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSC-CSEEEEEEECCS
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEEEeCC
Confidence 46766654 899999 9999999999999996 578888888775 568999999975
No 414
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=97.85 E-value=8.3e-06 Score=71.66 Aligned_cols=57 Identities=12% Similarity=-0.004 Sum_probs=49.7
Q ss_pred eEEEE----eecCCcCCC-CCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeEEE
Q 008087 493 MSSLL----WCLRSPLCL-NCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQVVV 549 (578)
Q Consensus 493 ~vvvs----~v~A~~aGl-~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~~~ 549 (578)
++++. +++|+++|| +.||+|++|||++|.+ +.++.++++..+++.+.|++.|+++..
T Consensus 34 ~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~ 97 (127)
T 1b8q_A 34 PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF 97 (127)
T ss_dssp CEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEECCCCSE
T ss_pred CEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEeCCceE
Confidence 45555 458999999 9999999999999999 999999999888889999999987644
No 415
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=97.84 E-value=2.2e-05 Score=65.41 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=45.0
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
++++.. ++|+++| |++||+|++|||++|.+ +.++..+++... +.+.|++.|++.
T Consensus 31 gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~~~ 91 (98)
T 2opg_A 31 AIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTP-QRVRLTLYRDEA 91 (98)
T ss_dssp SEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SEEEEEEEECSS
T ss_pred CEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEcCCC
Confidence 465554 4899999 99999999999999987 678888888754 789999988764
No 416
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.84 E-value=8.5e-06 Score=70.50 Aligned_cols=57 Identities=12% Similarity=0.081 Sum_probs=46.5
Q ss_pred ceEEEEee----cCCcCCCCCCCEEEEeCCeecCCHHHHHHHHHh-cCCCeEEEEEecCeEE
Q 008087 492 QMSSLLWC----LRSPLCLNCFNKVLAFNGNPVKNLKSLANMVEN-CDDEFLKFDLEYDQVV 548 (578)
Q Consensus 492 ~~vvvs~v----~A~~aGl~~GD~I~~VNG~~V~~~~~l~~~l~~-~~~~~v~l~v~R~~~~ 548 (578)
.++++..+ +|+++||++||+|++|||++|.++.++..++.. ..++.+.|++.|++..
T Consensus 42 ~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~~~ 103 (117)
T 1uit_A 42 GGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHV 103 (117)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEECCCSCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCch
Confidence 35666654 799999999999999999999999888776543 4678999999998653
No 417
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=97.84 E-value=7e-06 Score=87.77 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=51.6
Q ss_pred CCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.|++|..|.++|||++ ||++||+|++|||++|.+...- .+..++.....|+.+.|+|.|+|+
T Consensus 23 ~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~--------e~~~~L~~~~~g~~v~L~V~r~g~ 85 (468)
T 3shw_A 23 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIRE--------EAVLFLLDLPKGEEVTILAQKKKD 85 (468)
T ss_dssp TEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHH--------HHHHHHHHSCTTSEEEEEEEECHH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHH--------HHHHHHHhcCCCCEEEEEEEECCc
Confidence 5899999999999999 9999999999999999884221 144566665689999999999764
No 418
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=97.83 E-value=2e-05 Score=69.26 Aligned_cols=54 Identities=11% Similarity=0.093 Sum_probs=47.3
Q ss_pred ceEEEEee----cCCcCC-CCCCCEEEEeCCeecC---CHHHHHHHHHhcCCCeEEEEEecCe
Q 008087 492 QMSSLLWC----LRSPLC-LNCFNKVLAFNGNPVK---NLKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 492 ~~vvvs~v----~A~~aG-l~~GD~I~~VNG~~V~---~~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
.+++|..+ +|+++| |+.||+|++|||++|. ++.++.++|+. .++.+.|+|.|+.
T Consensus 54 ~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~r~~ 115 (128)
T 2db5_A 54 VDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQ-TTGSLRLIVAREP 115 (128)
T ss_dssp EEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHH-CCSEEEEEEEECC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc-CCCeEEEEEEcCC
Confidence 35777654 799999 9999999999999998 99999999998 5788999998874
No 419
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.83 E-value=2e-05 Score=68.18 Aligned_cols=57 Identities=9% Similarity=0.076 Sum_probs=48.5
Q ss_pred eEEEEee----cCCcCC-CCCCCEEEEeCCeec--CCHHHHHHHHHhcCCCeEEEEEecCeEEEE
Q 008087 493 MSSLLWC----LRSPLC-LNCFNKVLAFNGNPV--KNLKSLANMVENCDDEFLKFDLEYDQVVVL 550 (578)
Q Consensus 493 ~vvvs~v----~A~~aG-l~~GD~I~~VNG~~V--~~~~~l~~~l~~~~~~~v~l~v~R~~~~~l 550 (578)
+++|..+ +|+++| |++||+|++|||++| .+++++.++|++ .++.+.|+|.|++...+
T Consensus 43 ~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~~~~ 106 (117)
T 1v62_A 43 VITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLAS-ISEKVRLEILPVPQSQR 106 (117)
T ss_dssp EEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHS-CSSEEEEEECCBTTBCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEECCCCCc
Confidence 3666654 799999 999999999999999 679999999995 68899999999865433
No 420
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=97.83 E-value=3.3e-05 Score=65.44 Aligned_cols=56 Identities=7% Similarity=0.092 Sum_probs=47.1
Q ss_pred ceEEEEee----cCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCeEE
Q 008087 492 QMSSLLWC----LRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQVV 548 (578)
Q Consensus 492 ~~vvvs~v----~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~~~ 548 (578)
.++++..+ +|+++| |+.||+|++|||++|. ++.++..+++. .++.+.|++.|++..
T Consensus 38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~~ 100 (106)
T 3axa_A 38 LGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR-TSSVVTLEVAKQGAI 100 (106)
T ss_dssp EEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEECCCSS
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCcc
Confidence 45666654 799999 9999999999999998 58888888876 578899999998753
No 421
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=97.82 E-value=1.5e-05 Score=84.03 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=48.0
Q ss_pred CcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEE
Q 008087 354 GVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKI 423 (578)
Q Consensus 354 Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~ 423 (578)
.++|..|.++|||++ ||++||+|++|||++|.++. + ..++.. .|.+++|+|.|+|+.
T Consensus 91 ~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~~-~----------~~~l~~--~g~~v~l~v~R~g~~ 148 (403)
T 3k50_A 91 NALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKV-E----------SELLQG--STRQLQIGVYKEVVG 148 (403)
T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTBCBCTTT-G----------GGGTSC--SCEEEEEEEEEEEC-
T ss_pred eEEEEEeCCCChHHHcCCCCCCEEEEECCEEccchh-H----------HHHhhC--CCCEEEEEEEeCCcc
Confidence 378999999999999 99999999999999999984 2 244544 789999999998764
No 422
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=97.81 E-value=1.9e-05 Score=69.57 Aligned_cols=55 Identities=20% Similarity=0.155 Sum_probs=46.5
Q ss_pred ceEEEEee----cCCcCC-CCCCCEEEEeCCeec--CCHHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 492 QMSSLLWC----LRSPLC-LNCFNKVLAFNGNPV--KNLKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 492 ~~vvvs~v----~A~~aG-l~~GD~I~~VNG~~V--~~~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
.+++|..+ +|+++| |+.||+|++|||++| .+++++.++++... +.+.|++.|+++
T Consensus 65 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~~~ 126 (128)
T 1nf3_C 65 PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANS-RNLIITVRPANQ 126 (128)
T ss_dssp EEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHHHTT-TSEEEEEECCCC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECCc
Confidence 35666654 799999 899999999999999 78999999998654 569999998864
No 423
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=97.81 E-value=3.3e-05 Score=63.45 Aligned_cols=53 Identities=8% Similarity=0.082 Sum_probs=41.9
Q ss_pred ceEEEEe----ecCCcCCCCCCCEEEEeCCeecCCHH--HHHHHHHhcCCCeEEEEEecC
Q 008087 492 QMSSLLW----CLRSPLCLNCFNKVLAFNGNPVKNLK--SLANMVENCDDEFLKFDLEYD 545 (578)
Q Consensus 492 ~~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~~~--~l~~~l~~~~~~~v~l~v~R~ 545 (578)
.++++.. ++|+++||++||+|++|||++|.++. ++...+++ .++.+.|++.|+
T Consensus 32 ~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 90 (91)
T 1m5z_A 32 KGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAE-SGNKLDLVISRN 90 (91)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-STTEEEEEEEEC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEeC
Confidence 3565554 48999999999999999999999864 45566664 477899999875
No 424
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=97.81 E-value=2.1e-05 Score=69.49 Aligned_cols=49 Identities=8% Similarity=0.074 Sum_probs=44.3
Q ss_pred eecCCcC-CCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCe
Q 008087 498 WCLRSPL-CLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 498 ~v~A~~a-Gl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
+++|+++ ||+.||+|++|||+++.+ ++++.++|+..++..+.|++.|++
T Consensus 67 gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~ 118 (130)
T 1i16_A 67 GAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKS 118 (130)
T ss_dssp SCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEES
T ss_pred CCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeCC
Confidence 4589999 999999999999999986 799999999988888999998864
No 425
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=97.81 E-value=1.3e-05 Score=70.87 Aligned_cols=62 Identities=18% Similarity=0.265 Sum_probs=47.0
Q ss_pred CCCcEEEEeCCCCcccC--CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 352 QKGVRIRRVDPTAPESE--VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~--GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
..+++|..|.+++||++ ||++||+|++|||+.+.++..-. +..++.. ..+..+.|+|.|++.
T Consensus 56 ~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~--------~~~~l~~-~~~~~v~l~v~r~~~ 119 (130)
T 1i16_A 56 DKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFE--------AWNIIKA-LPDGPVTIVIRRKSL 119 (130)
T ss_dssp CCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHH--------HHHHHHT-SCSSEEEEEEEEESS
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH--------HHHHHHh-CCCceEEEEEEeCCC
Confidence 34799999999999987 89999999999999999863210 2234433 245679999988643
No 426
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=97.80 E-value=1.2e-05 Score=68.26 Aligned_cols=48 Identities=13% Similarity=0.132 Sum_probs=43.1
Q ss_pred eecCCcCCCCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCe
Q 008087 498 WCLRSPLCLNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 498 ~v~A~~aGl~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
+++|+++||+.||+|++|||++|. ++.++.+++++ .++.+.|++.|..
T Consensus 53 ~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~ 102 (107)
T 3qe1_A 53 GGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRA-GEKELILTVLSVE 102 (107)
T ss_dssp TSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHH-CSSEEEEEEECSS
T ss_pred CCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEcCC
Confidence 458999999999999999999999 88999999986 5788999998864
No 427
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=97.80 E-value=1.2e-05 Score=69.83 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=47.0
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
+++|.. ++|+++| |++||+|++|||++|. ++.++.++++..++..+.+.+.|++.
T Consensus 43 gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~~~ 104 (119)
T 1x6d_A 43 VITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLT 104 (119)
T ss_dssp SCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEECCC
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCCC
Confidence 455554 4899999 9999999999999999 69999999999888888888888764
No 428
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.79 E-value=4.5e-06 Score=73.38 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=45.0
Q ss_pred EeecCCcCCCCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 497 LWCLRSPLCLNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 497 s~v~A~~aGl~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
.+++|+++||++||+|++|||++|. +++++.++|+.. ++.+.|+|.|++.
T Consensus 70 ~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~ 121 (126)
T 2yuy_A 70 EGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNS-DTTLELSVMPKDS 121 (126)
T ss_dssp SSSHHHHHTCCSSCCCCEETTEECSSCCHHHHHHHHHTC-TTEEEEECCCCCC
T ss_pred CCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEECCC
Confidence 3568999999999999999999998 999999999975 8899999998764
No 429
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=97.79 E-value=2.3e-05 Score=64.96 Aligned_cols=54 Identities=6% Similarity=0.012 Sum_probs=44.7
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
++++.. ++|+++| |++||+|++|||++|.+ +.++..+++. .++.+.|++.|++.
T Consensus 34 ~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~g~ 94 (97)
T 2iwn_A 34 GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH-TGQTVLLTLMRRGE 94 (97)
T ss_dssp CCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCSEEEEEEEEEEE
T ss_pred CEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence 455554 4899999 99999999999999995 4777888876 77899999988774
No 430
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=3.3e-05 Score=67.06 Aligned_cols=55 Identities=15% Similarity=0.098 Sum_probs=46.1
Q ss_pred ceEEEEee----cCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 492 QMSSLLWC----LRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 492 ~~vvvs~v----~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
.+++|..+ +|+++| |+.||+|++|||++|.+ +.++..++++. ++.+.|+|.|+..
T Consensus 47 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~~~ 108 (120)
T 2eno_A 47 SGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA-GYAVSLRVQHRLQ 108 (120)
T ss_dssp CSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHH-CSEEEEEEEEEEE
T ss_pred CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCCc
Confidence 45666654 799999 99999999999999998 55888888875 6789999999876
No 431
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.79 E-value=1.8e-05 Score=67.36 Aligned_cols=55 Identities=18% Similarity=0.108 Sum_probs=46.7
Q ss_pred ceEEEEe----ecCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 492 QMSSLLW----CLRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 492 ~~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
.++++.. ++|+++| |+.||+|++|||++|. ++.++..+++.. ++.+.|++.|++.
T Consensus 42 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~~~ 103 (108)
T 1q7x_A 42 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT-GQVVHLLLEKGQS 103 (108)
T ss_dssp CCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHHT-TSEEEEEEECCCC
T ss_pred CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCCc
Confidence 3455554 5899999 9999999999999999 888999999874 7899999999864
No 432
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=97.79 E-value=1.8e-05 Score=68.17 Aligned_cols=55 Identities=11% Similarity=0.055 Sum_probs=46.3
Q ss_pred eEEEE----eecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeEE
Q 008087 493 MSSLL----WCLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQVV 548 (578)
Q Consensus 493 ~vvvs----~v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~~ 548 (578)
+++|. +++|+++| |+.||+|++|||++|.+ +.++.++++... +.+.|+|.|++..
T Consensus 44 gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~~~ 105 (116)
T 2dm8_A 44 AIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTP-QKVRLVVYRDEAH 105 (116)
T ss_dssp SEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCC-SEEEEEEECCSSC
T ss_pred CEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEeCCcc
Confidence 45555 45899999 99999999999999987 789999998765 7899999998754
No 433
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=97.78 E-value=4.5e-05 Score=63.17 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=49.5
Q ss_pred CcEEEEeCCCCcccC--CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEE
Q 008087 354 GVRIRRVDPTAPESE--VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLR 419 (578)
Q Consensus 354 Gv~V~~V~p~spA~~--GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R 419 (578)
.++|.+|.++++|++ .|+.||.|++|||+.+..+.... +..++.....|.+++|++.+
T Consensus 29 ~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~e--------vv~lLk~~~~g~~~~L~lv~ 88 (95)
T 3gge_A 29 YAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYD--------VAKKLKELKKEELFTMKLIE 88 (95)
T ss_dssp CCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHH--------HHHHHHHSCTTCEEEEEEEE
T ss_pred cEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHH--------HHHHHHhCCCCCEEEEEEEC
Confidence 478999999999998 59999999999999999986532 55778888888899888875
No 434
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.78 E-value=8.3e-06 Score=69.04 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=45.9
Q ss_pred CcEEEEeCCCCcccC-C-CCCCCEEEEECCEEeCC--CCCCccccCcchhHHHHHhcc---CCCCEEEEEEEECCE
Q 008087 354 GVRIRRVDPTAPESE-V-LKPSDIILSFDGIDIAN--DGTVPFRHGERIGFSYLVSQK---YTGDSAAVKVLRDSK 422 (578)
Q Consensus 354 Gv~V~~V~p~spA~~-G-L~~GDiIl~InG~~V~~--~~~v~~~~~~~~~~~~~~~~~---~~g~~v~l~V~R~g~ 422 (578)
+++|..|.+++||++ | |++||+|++|||+++.+ |.+ +..++... ..++.+.+.|.|.++
T Consensus 33 ~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~----------~~~~l~~~~~~~~~~~i~l~v~r~~~ 98 (103)
T 1ufx_A 33 LPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHRE----------AARIIAEAFKTKDRDYIDFLVTEFNS 98 (103)
T ss_dssp SCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHH----------HHHHHHHHHHCSSCSEEEEEECCCCC
T ss_pred cEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHH----------HHHHHHHhcccCCCCeEEEEEEEccc
Confidence 458999999999999 9 99999999999999977 443 23444432 247788898888654
No 435
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=97.78 E-value=5.8e-05 Score=62.50 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=42.8
Q ss_pred ceEEEEee----cCCcCCCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecC
Q 008087 492 QMSSLLWC----LRSPLCLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYD 545 (578)
Q Consensus 492 ~~vvvs~v----~A~~aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~ 545 (578)
.++++..+ +|++ ||++||+|++|||++|.+ +.++..+++. .++.+.|++.|+
T Consensus 35 ~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~ 92 (95)
T 1mfg_A 35 DGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKT-FQNTVELIIVRE 92 (95)
T ss_dssp CCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHHHHH-CCSEEEEEEEEE
T ss_pred CCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHHhhc-CCCeEEEEEEeC
Confidence 46666654 7888 999999999999999987 6777777774 578899999886
No 436
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.78 E-value=1.1e-05 Score=67.74 Aligned_cols=55 Identities=11% Similarity=0.027 Sum_probs=43.1
Q ss_pred ceEEEEee----cCCcCCCCCCCEEEEeCCeecCCHHHHHHHHHh-cCCCeEEEEEecCeE
Q 008087 492 QMSSLLWC----LRSPLCLNCFNKVLAFNGNPVKNLKSLANMVEN-CDDEFLKFDLEYDQV 547 (578)
Q Consensus 492 ~~vvvs~v----~A~~aGl~~GD~I~~VNG~~V~~~~~l~~~l~~-~~~~~v~l~v~R~~~ 547 (578)
.+++|..+ +|+++||++||+|++|||++|.++.+. +++.. ..++.+.|+|.|+++
T Consensus 35 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~-~~~~~~~~~~~v~l~v~R~g~ 94 (101)
T 1uez_A 35 VGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHA-EAVKALKGSKKLVLSVYSAGR 94 (101)
T ss_dssp CCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHH-HHHHHSSSSSSCCEEECCCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHH-HHHHhhcCCCeEEEEEEECCc
Confidence 35666554 799999999999999999999999884 34444 345678899998864
No 437
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=97.77 E-value=3.2e-05 Score=67.11 Aligned_cols=54 Identities=6% Similarity=-0.019 Sum_probs=45.7
Q ss_pred ceEEEEee----cCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCe
Q 008087 492 QMSSLLWC----LRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 492 ~~vvvs~v----~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
.++++..+ +|+++| |++||+|++|||+++. ++.++.+++++. ++.+.|++.|..
T Consensus 53 ~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~-~~~v~L~v~R~~ 113 (118)
T 3b76_A 53 LPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRT-SSSIVLKALEVK 113 (118)
T ss_dssp CCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSC-CSEEEEEEEEEE
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence 35666654 899999 9999999999999999 999999999976 567899887743
No 438
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=97.77 E-value=5.3e-05 Score=77.56 Aligned_cols=57 Identities=7% Similarity=-0.012 Sum_probs=48.8
Q ss_pred ceEEEEe----ecCCcCCCCCCCEEEEeCCeecCCHHHHHHHHHhc-CCCeEEEEEec-CeEE
Q 008087 492 QMSSLLW----CLRSPLCLNCFNKVLAFNGNPVKNLKSLANMVENC-DDEFLKFDLEY-DQVV 548 (578)
Q Consensus 492 ~~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~~~~l~~~l~~~-~~~~v~l~v~R-~~~~ 548 (578)
.++++.. ++|+++||++||+|++|||++|.++.+|..++... +++.+.|++.| +++.
T Consensus 242 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R~~g~~ 304 (324)
T 1y8t_A 242 LGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAVRSKAPGATVALTFQDPSGGS 304 (324)
T ss_dssp SSEEEEEECTTSTTTTTTCCTTCEEEEETTEECCSHHHHHHHHHTSCTTCEEEEEEECSSCCE
T ss_pred CceEEEEECCCChHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCCCE
Confidence 4555554 48999999999999999999999999999999874 68899999999 7643
No 439
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=97.75 E-value=4.3e-05 Score=62.53 Aligned_cols=52 Identities=17% Similarity=0.108 Sum_probs=43.6
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeec--CCHHHHHHHHHhcCCCeEEEEEecC
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPV--KNLKSLANMVENCDDEFLKFDLEYD 545 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V--~~~~~l~~~l~~~~~~~v~l~v~R~ 545 (578)
++++.. ++|+++| |+.||+|++|||+++ .+++++.+++++..+ .+.|++.+.
T Consensus 22 gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~-~v~L~v~~~ 80 (88)
T 3e17_A 22 QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRG-KLQLVVLRD 80 (88)
T ss_dssp EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTT-EEEEEECCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-eEEEEEeCC
Confidence 355554 5899999 999999999999999 799999999998654 788888664
No 440
>1lvm_A Catalytic domain of the nuclear inclusion protein A (NIA); beta barrel, chymotrypsin-type cystein protease, enzyme- peptide complex; 1.80A {Tobacco etch virus} SCOP: b.47.1.3 PDB: 1lvb_A 1q31_A
Probab=97.74 E-value=0.0011 Score=63.27 Aligned_cols=171 Identities=17% Similarity=0.211 Sum_probs=101.9
Q ss_pred cccCCCCcEEEEeeeeCCCCCCccccCCCcceEEEEEEEc-CCEEEecccccCCC-ceEEEEEcCCCcEEEEE-----EE
Q 008087 118 VVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFAIG-GRRVLTNAHSVEHY-TQVKLKKRGSDTKYLAT-----VL 190 (578)
Q Consensus 118 ~~~~~~sVV~I~~~~~~~~~~~p~~~~~~~~~~GsGfvI~-~g~ILT~aHvV~~~-~~i~V~~~~~g~~~~a~-----vv 190 (578)
..++...|+++...... . ..+=+-|. ..||+|++|..... ..++|+.. .| .|... -+
T Consensus 19 yn~Ia~~ic~l~n~sdg------------~--~~~l~gigyG~~iItn~HLf~~nnG~L~I~s~-hG-~f~v~nt~~lki 82 (229)
T 1lvm_A 19 YNPISSTICHLTNESDG------------H--TTSLYGIGFGPFIITNKHLFRRNNGTLLVQSL-HG-VFKVKNTTTLQQ 82 (229)
T ss_dssp CHHHHTTEEEEEEEETT------------E--EEEEEEEEETTEEEECGGGGGCCSSEEEEEET-TE-EEEESCGGGSEE
T ss_pred CChhheEEEEEEeccCC------------c--eEEEEEEeECCEEEeChhhhccCCCcEEEEeC-CC-eEEeCCCCceee
Confidence 34455678888776411 1 12222233 67999999999865 56777762 33 23211 13
Q ss_pred EEcCCCCEEEEEEeeCCCCCCeeeEEcC---CCCCCCCcEEEEeecCCCCcceEEEeEEeceeeeee-cCCceeeeEEEE
Q 008087 191 AIGTECDIAMLTVEDDEFWEGVLPVEFG---ELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSY-VHGSTELLGLQI 266 (578)
Q Consensus 191 ~~d~~~DlAlLkv~~~~~~~~~~~l~l~---~~~~~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~-~~~~~~~~~i~~ 266 (578)
..-...||.+||+..+ ++|.+-. ..+..++.|..+|.-+.... ..-.||....... ..+.....+|
T Consensus 83 ~~i~g~DiiiIrmPkD-----fpPf~~~l~FR~P~~~e~V~lVg~~fq~k~---~~s~vSesS~i~p~~~~~fWkHwI-- 152 (229)
T 1lvm_A 83 HLIDGRDMIIIRMPKD-----FPPFPQKLKFREPQREERICLVTTNFQTKS---MSSMVSDTSCTFPSSDGIFWKHWI-- 152 (229)
T ss_dssp EECTTSSCEEEECCTT-----SCCCCSCCCBCCCCTTCEEEEEEEECSSSS---CEEEECCCEECEEETTTTEEEECB--
T ss_pred EEeCCccEEEEeCCCc-----CCCcccccccCCCCCCCeEEEEEeEeecCC---ccEEECCcceeEecCCCCEeEEEe--
Confidence 4456899999999875 3443221 35678999999998766333 1223443322211 1222222333
Q ss_pred ecCCCCCCccceEEcc-CCeEEEEEeccccccccCCceeeecchh-HHHHHHHHH
Q 008087 267 DAAINSGNSGGPAFND-KGKCVGIAFQSLKHEDVENIGYVIPTPV-IMHFIQDYE 319 (578)
Q Consensus 267 da~i~~G~SGGPlvn~-~G~vVGI~~~~~~~~~~~~~~~aiPi~~-i~~~l~~l~ 319 (578)
....|+=|.|+++. +|.+|||.+... .....+|+.|+.. +..+|+...
T Consensus 153 --sT~~G~CGlPlVs~~Dg~IVGiHsl~~---~~~~~NyF~~f~~~f~~~L~~~~ 202 (229)
T 1lvm_A 153 --QTKDGQCGSPLVSTRDGFIVGIHSASN---FTNTNNYFTSVPKNFMELLTNQE 202 (229)
T ss_dssp --CCCTTCTTCEEEETTTCCEEEEEEEEE---TTSCSEEEEECCTTHHHHHHCGG
T ss_pred --eCCCCcCCCcEEECCCCcEEEEEcccc---cCCCeEEEeCCCHHHHHHHhccc
Confidence 34568889999986 899999998843 2344677777643 336666554
No 441
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=97.74 E-value=2.5e-05 Score=64.26 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=43.7
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
++++.. ++|+++| |++||+|++|||+++.+ +.++..+++. .++.+.|++.|.+.
T Consensus 30 gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~ 90 (92)
T 2qg1_A 30 GVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKC-SLGTVTLEVGRIST 90 (92)
T ss_dssp SCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEECCCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEcccc
Confidence 455554 4899999 99999999999999976 5778888876 46679999988763
No 442
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=97.73 E-value=2.9e-05 Score=66.42 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=44.9
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
++++.. ++|+++| |+.||+|++|||++|. ++.++.++++.. ++.+.|+|.|++.
T Consensus 39 g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~~~ 99 (111)
T 2dlu_A 39 GVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNC-GNSVRMLVARDPA 99 (111)
T ss_dssp SBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHH-CSEEEEEEEESCT
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeCCC
Confidence 455554 4899999 9999999999999999 568999999874 6789999988753
No 443
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=97.72 E-value=1.5e-05 Score=64.36 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=41.6
Q ss_pred EEEeecCCcCCCCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEe
Q 008087 495 SLLWCLRSPLCLNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLE 543 (578)
Q Consensus 495 vvs~v~A~~aGl~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~ 543 (578)
++.+++|+++||+.||+|++|||+.|. +.+++.++|+ ..+..++|++.
T Consensus 30 v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr-~~g~~V~L~v~ 79 (82)
T 1r6j_A 30 IVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITIM 79 (82)
T ss_dssp ECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEE
T ss_pred ecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHh-cCCCEEEEEEE
Confidence 445679999999999999999999996 6789999999 56778888875
No 444
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.72 E-value=2.6e-05 Score=64.95 Aligned_cols=49 Identities=10% Similarity=0.082 Sum_probs=41.5
Q ss_pred EEeecCCcCCCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCe
Q 008087 496 LLWCLRSPLCLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 496 vs~v~A~~aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
..+++|+ +||++||+|++|||++|.+ +.++...+++ .++.+.|++.|+.
T Consensus 39 ~~~spA~-agL~~GD~Il~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 89 (96)
T 2edv_A 39 TAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILRE-AEDSLSITVVRCT 89 (96)
T ss_dssp CSSSSST-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHH-CSSCEEEEEEECC
T ss_pred CCCCchh-hCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 3455785 9999999999999999986 7788888887 5788999999875
No 445
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.72 E-value=4.6e-05 Score=65.00 Aligned_cols=54 Identities=9% Similarity=0.105 Sum_probs=45.3
Q ss_pred ceEEEEe----ecCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCe
Q 008087 492 QMSSLLW----CLRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 492 ~~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
.++++.. ++|+++| |++||+|++|||++|. ++.++..+++.. ++.+.|++.|++
T Consensus 36 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~ 96 (110)
T 1um1_A 36 PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHG-GKKMRFLVAKSD 96 (110)
T ss_dssp SSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence 3566665 4799999 9999999999999997 578888888874 788999999875
No 446
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=96.88 E-value=5e-06 Score=71.54 Aligned_cols=34 Identities=24% Similarity=0.507 Sum_probs=31.5
Q ss_pred CCcEEEEeCCCCcccC--CCCCCCEEEEECCEEeCC
Q 008087 353 KGVRIRRVDPTAPESE--VLKPSDIILSFDGIDIAN 386 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~--GL~~GDiIl~InG~~V~~ 386 (578)
.|++|..|.++|||++ ||++||+|++|||++|.+
T Consensus 53 ~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~ 88 (112)
T 2lob_A 53 VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRD 88 (112)
Confidence 4799999999999997 899999999999999955
No 447
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=97.70 E-value=4.1e-05 Score=66.61 Aligned_cols=54 Identities=7% Similarity=0.100 Sum_probs=44.6
Q ss_pred eEEEEe----ecCCcC-CCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPL-CLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~a-Gl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
+++|.. ++|+++ ||+.||+|++|||++|.+ +.++..+++... +.+.|+|.|++.
T Consensus 54 ~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~g~ 114 (120)
T 2iwo_A 54 PIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNAS-GSIEMQVVAGGD 114 (120)
T ss_dssp EEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHCC-SEEEEEEECCTT
T ss_pred CEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECCc
Confidence 455554 478888 999999999999999986 788899998864 559999998763
No 448
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.69 E-value=2.3e-05 Score=65.73 Aligned_cols=54 Identities=9% Similarity=0.062 Sum_probs=44.6
Q ss_pred eEEEE----eecCCcC-CCCCCCEEEEeCCeecCCH-HHHHHHHHhcCCCeEEEEEecCeE
Q 008087 493 MSSLL----WCLRSPL-CLNCFNKVLAFNGNPVKNL-KSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs----~v~A~~a-Gl~~GD~I~~VNG~~V~~~-~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
+++|. +++|+++ ||++||+|++|||++|.++ .++.+++++. ++.+.|++.|++.
T Consensus 36 ~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~v~l~v~R~~~ 95 (100)
T 2edp_A 36 PLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGSRQEALILIKGS-FRILKLIVRRRNS 95 (100)
T ss_dssp EEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSCSHHHHHHHHTC-CSSCEEEEEECCC
T ss_pred CeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccchHHHHHHHHHhC-CCeEEEEEEeCCC
Confidence 35554 4589999 9999999999999999984 7788888865 6788999999865
No 449
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=97.69 E-value=8e-05 Score=65.90 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=44.7
Q ss_pred eEEEEe----ecCCcCCCCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCe
Q 008087 493 MSSLLW----CLRSPLCLNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 493 ~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
+++|.. ++|+++||+.||+|++|||++|. ++.++.+++++ .++.+.|++.|..
T Consensus 66 gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~~~~ 124 (132)
T 3l4f_D 66 LQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQ-GGNTLMVKVVMVT 124 (132)
T ss_dssp SEEEEEECTTSGGGGGTCCTTCEEEEESSSBCTTSCHHHHHHHHHH-TTTEEEEEEECCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECC
Confidence 466654 48999999999999999999998 58889999987 5678889887754
No 450
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=97.69 E-value=4.4e-05 Score=72.10 Aligned_cols=56 Identities=7% Similarity=0.157 Sum_probs=48.8
Q ss_pred eEEEEe----ecCCcCCCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeEEEE
Q 008087 493 MSSLLW----CLRSPLCLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQVVVL 550 (578)
Q Consensus 493 ~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~~~l 550 (578)
+++|.. ++|+++||+.||+|++|||++|.+ +.++.++++. ++.+.|+|.|++..-.
T Consensus 111 ~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~--~~~v~l~v~r~g~~p~ 172 (192)
T 3k1r_A 111 GLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT--EKTVSIKVRHIGLIPV 172 (192)
T ss_dssp EEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS--SSEEEEEEEECCEEEE
T ss_pred CEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC--CCeEEEEEEECCccCC
Confidence 455554 589999999999999999999998 9999999987 7899999999988544
No 451
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=97.69 E-value=3.6e-05 Score=65.98 Aligned_cols=55 Identities=7% Similarity=0.030 Sum_probs=46.6
Q ss_pred ceEEEEee----cCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 492 QMSSLLWC----LRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 492 ~~vvvs~v----~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
.++++..+ +|+++| |++||+|++|||++|.+ +.++..+++.. ++.+.|++.|++.
T Consensus 35 ~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~~~ 96 (113)
T 2g5m_B 35 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNT-KGRVRFMIGRERP 96 (113)
T ss_dssp EEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHS-CSSCEEEEEECCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CCeEEEEEEeCCC
Confidence 46777654 799999 99999999999999985 77888888875 7889999998864
No 452
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.69 E-value=4.9e-05 Score=62.60 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=43.4
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCe
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
++++.. ++|+++| |+.||+|++|||++|. ++.++.++++... +.+.|++.|+.
T Consensus 31 ~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~r~~ 90 (93)
T 2dkr_A 31 PIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQ-GSVKLVVRSGP 90 (93)
T ss_dssp CCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCC-SEEEEEECCCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEeCC
Confidence 455554 4799996 9999999999999999 5788999998764 57999998864
No 453
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=97.68 E-value=5.1e-05 Score=65.34 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=40.0
Q ss_pred eecCCcCC-CCCCCEEEEeCCeec--CCHHHHHHHHHhcCCCeEEEEEec
Q 008087 498 WCLRSPLC-LNCFNKVLAFNGNPV--KNLKSLANMVENCDDEFLKFDLEY 544 (578)
Q Consensus 498 ~v~A~~aG-l~~GD~I~~VNG~~V--~~~~~l~~~l~~~~~~~v~l~v~R 544 (578)
+++|+++| |++||+|++|||++| .++.++.++++...+ .+.|++.+
T Consensus 60 gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~~ 108 (114)
T 2gzv_A 60 NTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKG-EVTIHYNK 108 (114)
T ss_dssp TSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS-EEEEEEEC
T ss_pred CChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-eEEEEEEe
Confidence 45899999 999999999999999 899999999997654 57887754
No 454
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=97.68 E-value=9.5e-05 Score=63.79 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=44.6
Q ss_pred ceEEEEee----cCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCe
Q 008087 492 QMSSLLWC----LRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 492 ~~vvvs~v----~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
.+++|..+ +|+++| |+.||+|++|||++|.+ +.++..+++. .++.+.|+|.|..
T Consensus 50 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~r~~ 110 (117)
T 2ehr_A 50 KGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKN-AGNPVVFIVQSLS 110 (117)
T ss_dssp CSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHT-SCSSEEEEECCBS
T ss_pred CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 45666654 899999 99999999999999975 7788888886 4778899987754
No 455
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.68 E-value=5.6e-05 Score=65.47 Aligned_cols=55 Identities=13% Similarity=0.058 Sum_probs=45.4
Q ss_pred eEEEEe----ecCCcC--CCCCCCEEEEeCCeecCC--HHHHHHHHHhcCC---CeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPL--CLNCFNKVLAFNGNPVKN--LKSLANMVENCDD---EFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~a--Gl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~---~~v~l~v~R~~~ 547 (578)
+++|.. ++|+++ ||+.||+|++|||++|.+ +.++.++++...+ ..+.|++.|+..
T Consensus 42 ~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~ 107 (119)
T 2cs5_A 42 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAV 107 (119)
T ss_dssp EEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECCCC
T ss_pred CeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEEEcccc
Confidence 455554 589999 999999999999999975 6888899988754 589999999854
No 456
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.67 E-value=2.1e-05 Score=66.14 Aligned_cols=54 Identities=7% Similarity=0.085 Sum_probs=44.8
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
++++.. ++|+++| |+.||+|++|||++|.+ +.++.++++ ..++.+.|++.|++.
T Consensus 37 ~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~~~ 97 (103)
T 1wfv_A 37 DLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIK-SGGRRVRLLLKRGTG 97 (103)
T ss_dssp EEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHH-HHCSEECEEEECTTC
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEECCC
Confidence 565554 4899999 99999999999999987 578888887 457789999998865
No 457
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=97.67 E-value=3.2e-05 Score=67.97 Aligned_cols=54 Identities=7% Similarity=-0.024 Sum_probs=46.1
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhc------CCCeEEEEEecCe
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENC------DDEFLKFDLEYDQ 546 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~------~~~~v~l~v~R~~ 546 (578)
+++|.. ++|+++| |+.||+|++|||+++.+ +.++.++|+.. ++..+.|+|.|++
T Consensus 56 gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~ 122 (127)
T 1wg6_A 56 GIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRS 122 (127)
T ss_dssp EEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECS
T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhccccCCCCEEEEEEEeCC
Confidence 466654 4899999 99999999999999987 77999999975 4789999998875
No 458
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=97.67 E-value=5.2e-05 Score=64.29 Aligned_cols=53 Identities=11% Similarity=0.054 Sum_probs=43.5
Q ss_pred eEEEEe----ecCCcCC--CCCCCEEEEeCCeecCCH--HHHHHHHHhcCC---CeEEEEEecC
Q 008087 493 MSSLLW----CLRSPLC--LNCFNKVLAFNGNPVKNL--KSLANMVENCDD---EFLKFDLEYD 545 (578)
Q Consensus 493 ~vvvs~----v~A~~aG--l~~GD~I~~VNG~~V~~~--~~l~~~l~~~~~---~~v~l~v~R~ 545 (578)
+++|.. ++|+++| |+.||+|++|||++|.++ .++..+++...+ +.+.|+|.|+
T Consensus 44 ~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~v~r~ 107 (107)
T 3nfk_A 44 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPN 107 (107)
T ss_dssp EEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEEEECC
T ss_pred CeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEEEEcC
Confidence 455554 4899999 999999999999999955 788888887653 5899999885
No 459
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=97.66 E-value=8e-05 Score=62.66 Aligned_cols=53 Identities=11% Similarity=0.023 Sum_probs=43.2
Q ss_pred ceEEEEe----ecCCcCCCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCe
Q 008087 492 QMSSLLW----CLRSPLCLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 492 ~~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
.++++.. ++|++ ||++||+|++|||++|.+ +.++...++. .++.+.|++.|+.
T Consensus 43 ~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 101 (103)
T 1n7t_A 43 DGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKT-FQNTVELIIVREV 101 (103)
T ss_dssp CSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHHHHHHHHHH-CCSEEEEEEECCC
T ss_pred CCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHHHHHHHhhc-CCCeEEEEEEecC
Confidence 4565554 48999 999999999999999986 7778888874 5788999998873
No 460
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=97.66 E-value=3.3e-05 Score=65.23 Aligned_cols=50 Identities=10% Similarity=0.177 Sum_probs=42.2
Q ss_pred ceEEEEe----ecCCcCCCCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEE
Q 008087 492 QMSSLLW----CLRSPLCLNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDL 542 (578)
Q Consensus 492 ~~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v 542 (578)
.++++.. ++|+++||++||+|++|||++|. +++++.++|+...+ .+.|+|
T Consensus 48 ~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~-~v~l~v 103 (104)
T 2z17_A 48 MFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGN-LLTIET 103 (104)
T ss_dssp CCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCHHHHHHHHHHTTT-EEEEEC
T ss_pred CCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEE
Confidence 3566554 48999999999999999999999 99999999999855 777764
No 461
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=97.66 E-value=5.5e-05 Score=62.91 Aligned_cols=52 Identities=8% Similarity=0.083 Sum_probs=40.2
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecC
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYD 545 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~ 545 (578)
++++.. ++|+++| |++||+|++|||++|.+ +.+...+++. .++.+.|++.|.
T Consensus 32 gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~ 90 (96)
T 2qkv_A 32 GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKG-ANGKVSMEVTRP 90 (96)
T ss_dssp SEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEECC
T ss_pred cEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCcEEEEEEeC
Confidence 455554 4899999 99999999999999986 3444555554 456799999885
No 462
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.66 E-value=6.4e-06 Score=88.27 Aligned_cols=65 Identities=18% Similarity=0.340 Sum_probs=0.0
Q ss_pred CCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCEEEEEEE
Q 008087 352 QKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNI 428 (578)
Q Consensus 352 ~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~~~~~~v 428 (578)
..|++|..|.++|||++ ||++||+|++|||++|.++.++ ..++... .+ .+.|+|.|+|+.+.+.+
T Consensus 382 ~~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~~~~l----------~~~l~~~-~~-~v~l~v~R~g~~~~~~l 447 (448)
T 1ky9_A 382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAEL----------RKVLDSK-PS-VLALNIQRGDSTIYLLM 447 (448)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCeEEEEEecCCCHHHHcCCCCCCEEEEECCEECCCHHHH----------HHHHHcC-CC-eEEEEEEECCEEEEEEe
Confidence 35899999999999999 9999999999999999999884 4555543 33 88999999998776654
No 463
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=97.65 E-value=9.6e-05 Score=61.25 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=39.6
Q ss_pred eEEEEe----ecCCcCCCCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEe
Q 008087 493 MSSLLW----CLRSPLCLNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLE 543 (578)
Q Consensus 493 ~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~ 543 (578)
++++.. ++|+++||+.||+|++|||++|. +++++.+++++ ..+.|+|.
T Consensus 36 g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~~---~~l~ltV~ 89 (94)
T 3kzd_A 36 RLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ---PSLGLLVR 89 (94)
T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHS---SEEEEEEE
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC---CeEEEEEE
Confidence 566654 48999999999999999999999 57999999984 55777664
No 464
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.65 E-value=4.7e-05 Score=64.63 Aligned_cols=54 Identities=7% Similarity=0.057 Sum_probs=45.1
Q ss_pred ceEEEEee----cCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCe
Q 008087 492 QMSSLLWC----LRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 492 ~~vvvs~v----~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
.++++..+ +|+++| |+.||+|++|||++|. ++.++..+++.. ++.+.|+|.|+.
T Consensus 40 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~ 100 (107)
T 1wf8_A 40 LGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNT-KGNVRFVIGREK 100 (107)
T ss_dssp EEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHC-CSEEEEEEEEEC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CCeEEEEEEeCC
Confidence 46766654 799999 9999999999999998 477888888874 788999998864
No 465
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.65 E-value=1.5e-05 Score=68.25 Aligned_cols=54 Identities=7% Similarity=-0.087 Sum_probs=46.1
Q ss_pred ceEEEEee----cCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCe
Q 008087 492 QMSSLLWC----LRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 492 ~~vvvs~v----~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
.+++|..+ +|+++| |+.||+|++|||++|. ++.++..+++. .++.+.|+|.|+.
T Consensus 44 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~ 104 (111)
T 1uju_A 44 EGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRS-VGDTLTVLVCDGF 104 (111)
T ss_dssp CCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSS-CSSEEEECCCCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 45666654 799999 9999999999999999 79999999987 5788999998874
No 466
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=97.63 E-value=6.7e-05 Score=65.61 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=41.0
Q ss_pred eecCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEec
Q 008087 498 WCLRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEY 544 (578)
Q Consensus 498 ~v~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R 544 (578)
+++|+++| |++||+|++|||++|. ++.++.+++++..+. +.|++.|
T Consensus 55 gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~-v~l~v~r 103 (125)
T 3hpk_A 55 NTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE-VTIHYNK 103 (125)
T ss_dssp TSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSE-EEEEEEE
T ss_pred CCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe-EEEEEEE
Confidence 45899999 9999999999999998 789999999987665 8888876
No 467
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.63 E-value=1.6e-05 Score=67.21 Aligned_cols=50 Identities=14% Similarity=0.178 Sum_probs=44.0
Q ss_pred EeecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhc----CCCeEEEEEecCe
Q 008087 497 LWCLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENC----DDEFLKFDLEYDQ 546 (578)
Q Consensus 497 s~v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~----~~~~v~l~v~R~~ 546 (578)
.+++|+++| |+.||+|++|||+++.+ ++++.++|+++ .++.+.|.+.|.+
T Consensus 41 ~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~r~~ 97 (103)
T 1ufx_A 41 RGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFN 97 (103)
T ss_dssp TTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECCCC
T ss_pred CCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCCeEEEEEEEcc
Confidence 455899999 99999999999999975 99999999986 6788999998864
No 468
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=97.63 E-value=7e-05 Score=64.27 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=42.8
Q ss_pred eEEEEee----cCCcCCCCCCCEEEEeCCeecCCHHH--HHHHHHhcCCCeEEEEEecC-e
Q 008087 493 MSSLLWC----LRSPLCLNCFNKVLAFNGNPVKNLKS--LANMVENCDDEFLKFDLEYD-Q 546 (578)
Q Consensus 493 ~vvvs~v----~A~~aGl~~GD~I~~VNG~~V~~~~~--l~~~l~~~~~~~v~l~v~R~-~ 546 (578)
++++..+ +|+++||+.||+|++|||++|.++.+ +..+++.. +.+.|++.|+ +
T Consensus 42 gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~--~~v~l~v~r~~g 100 (114)
T 1x5n_A 42 GIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS--RSLTISIVAAAG 100 (114)
T ss_dssp SEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHC--SSEEEEECSSTT
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcC--CeEEEEEEcCCC
Confidence 5666654 89999999999999999999998854 77778764 5788999887 5
No 469
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.63 E-value=7.9e-05 Score=63.20 Aligned_cols=54 Identities=7% Similarity=0.039 Sum_probs=43.6
Q ss_pred ceEEEEe----ecCCcC-CCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCe
Q 008087 492 QMSSLLW----CLRSPL-CLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 492 ~~vvvs~----v~A~~a-Gl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
.++++.. ++|+++ ||+.||+|++|||++|.+ +.++..++++ .++.+.|++.|.+
T Consensus 41 ~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~ 101 (107)
T 1uhp_A 41 EGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKT-AKEPIVVQVLRRT 101 (107)
T ss_dssp CCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHH-CCSSEEEEEEECC
T ss_pred CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCcEEEEEEeCC
Confidence 4565554 479999 999999999999999975 7788888887 4667888888764
No 470
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=97.61 E-value=9.1e-05 Score=60.63 Aligned_cols=51 Identities=10% Similarity=0.135 Sum_probs=41.7
Q ss_pred eEEEEe----ecCCcC-CCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEec
Q 008087 493 MSSLLW----CLRSPL-CLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEY 544 (578)
Q Consensus 493 ~vvvs~----v~A~~a-Gl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R 544 (578)
++++.. ++|+++ ||++||+|++|||++|.+ +.++..++++. ++.+.|++.|
T Consensus 31 g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-~~~v~l~v~r 88 (90)
T 1qav_A 31 PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT-GKEVVLEVKY 88 (90)
T ss_dssp EEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEE
T ss_pred CEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEE
Confidence 455554 489999 999999999999999985 67788888865 5678888876
No 471
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=4.3e-05 Score=65.85 Aligned_cols=51 Identities=14% Similarity=0.048 Sum_probs=42.2
Q ss_pred eEEEEe----ecCCcCCCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCe
Q 008087 493 MSSLLW----CLRSPLCLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 493 ~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
++++.. ++|+++||++||+|++|||++|.+ |.++.++++. ..+.|+|.|..
T Consensus 45 gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~---~~v~l~v~R~p 101 (114)
T 2d8i_A 45 RLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ---PSLGLLVRTYP 101 (114)
T ss_dssp EEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTS---SEEEEEEEECC
T ss_pred CEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC---CcEEEEEEECC
Confidence 466654 479999999999999999999998 6788888874 47888888753
No 472
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=97.59 E-value=9.5e-05 Score=68.41 Aligned_cols=53 Identities=8% Similarity=0.036 Sum_probs=45.4
Q ss_pred ceEEEEee----cCCcCC-CCCCCEEEEeCCeec--CCHHHHHHHHHhcCCCeEEEEEecC
Q 008087 492 QMSSLLWC----LRSPLC-LNCFNKVLAFNGNPV--KNLKSLANMVENCDDEFLKFDLEYD 545 (578)
Q Consensus 492 ~~vvvs~v----~A~~aG-l~~GD~I~~VNG~~V--~~~~~l~~~l~~~~~~~v~l~v~R~ 545 (578)
.+++|..+ +|+++| |+.||+|++|||++| .++.++.++|+. .+..+.|+|.|+
T Consensus 111 ~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~-~g~~v~L~V~R~ 170 (170)
T 3egg_C 111 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN-TKGRVRFMIGRE 170 (170)
T ss_dssp BEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHH-CCSEEEEEEEEC
T ss_pred CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEeC
Confidence 45666654 799999 999999999999999 578899999998 567899999885
No 473
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=97.58 E-value=6.9e-05 Score=63.63 Aligned_cols=52 Identities=8% Similarity=0.087 Sum_probs=40.3
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecC
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYD 545 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~ 545 (578)
++++.. ++|+++| |++||+|++|||++|.+ ..+...+++. .++.+.|++.|.
T Consensus 26 gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~ 84 (106)
T 2la8_A 26 GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG-ANGKVSMEVTRP 84 (106)
T ss_dssp SEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHS-CBSCEEEEEEEC
T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCCeEEEEEEeC
Confidence 466664 4899999 99999999999999986 4445555554 456799999885
No 474
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=97.55 E-value=0.0001 Score=61.99 Aligned_cols=53 Identities=13% Similarity=0.113 Sum_probs=43.0
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCe
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
++++.. ++|+++| |+.||+|++|||++|. ++.++...++. .++.+.|++.|+.
T Consensus 36 gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 95 (104)
T 3i4w_A 36 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTIIAQYKP 95 (104)
T ss_dssp CEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEECH
T ss_pred CEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECc
Confidence 566654 4799999 9999999999999995 56677777776 5678999998864
No 475
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=97.55 E-value=4.5e-05 Score=78.95 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=49.3
Q ss_pred ceEEEEe----ecCCcCCCCC-----------CCEEEEeCCeecCCHHHHHHHHHhc-CCCeEEEEEecCeEE
Q 008087 492 QMSSLLW----CLRSPLCLNC-----------FNKVLAFNGNPVKNLKSLANMVENC-DDEFLKFDLEYDQVV 548 (578)
Q Consensus 492 ~~vvvs~----v~A~~aGl~~-----------GD~I~~VNG~~V~~~~~l~~~l~~~-~~~~v~l~v~R~~~~ 548 (578)
.|+++.+ ++|++|||+. ||+|++|||++|.++.+|.++|.+. +++.+.|++.|+++.
T Consensus 251 ~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~~dl~~~l~~~~~g~~v~l~v~R~g~~ 323 (348)
T 3qo6_A 251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLYRILDQCKVGDEVTVEVLRGDHK 323 (348)
T ss_dssp SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSSSHHHHHHHTTCCTTCEEEEEEECSSSE
T ss_pred ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeCCHHHHHHHHHhCCCcCEEEEEEEECCEE
Confidence 4666664 4899999999 9999999999999999999999764 588999999998654
No 476
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=97.54 E-value=7.7e-05 Score=65.16 Aligned_cols=54 Identities=6% Similarity=0.004 Sum_probs=44.0
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeE
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQV 547 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~ 547 (578)
+++|.. ++|+++| |++||+|++|||++|.+ +.++..+++... ..+.|+|.|++.
T Consensus 52 gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~~~ 112 (124)
T 2daz_A 52 SIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAP-SKVKLVFIRNED 112 (124)
T ss_dssp CEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSC-SEEEEEEEECTT
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEeCCC
Confidence 465554 4799999 99999999999999965 778888888764 589999988753
No 477
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.54 E-value=3.4e-05 Score=66.87 Aligned_cols=48 Identities=10% Similarity=0.134 Sum_probs=42.2
Q ss_pred eecCCcC-CCCCCCEEEEeCCeecCC--HHHHHHHHHhc---CCCeEEEEEecC
Q 008087 498 WCLRSPL-CLNCFNKVLAFNGNPVKN--LKSLANMVENC---DDEFLKFDLEYD 545 (578)
Q Consensus 498 ~v~A~~a-Gl~~GD~I~~VNG~~V~~--~~~l~~~l~~~---~~~~v~l~v~R~ 545 (578)
+++|+++ ||++||+|++|||+++.+ ++++.++|++. .++.+.|++.|.
T Consensus 53 gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r~ 106 (118)
T 1v6b_A 53 GGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVC 106 (118)
T ss_dssp TSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred CCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEEeC
Confidence 4589999 999999999999999997 78999999875 378899999885
No 478
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=97.53 E-value=0.00016 Score=85.38 Aligned_cols=66 Identities=15% Similarity=0.181 Sum_probs=54.6
Q ss_pred CCCcEEEEeCCC--------CcccC-C--CCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEEC
Q 008087 352 QKGVRIRRVDPT--------APESE-V--LKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRD 420 (578)
Q Consensus 352 ~~Gv~V~~V~p~--------spA~~-G--L~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~ 420 (578)
..+++|..|.++ |||++ | |+ ||+|++|||+++.++.+ +..++.. ..|.++.|+|.|+
T Consensus 747 ~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~~----------~~~~~~~-~~g~~v~l~v~r~ 814 (1045)
T 1k32_A 747 GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGSN----------IYRVLSE-KAGTSARIRLSGK 814 (1045)
T ss_dssp TTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTBC----------HHHHHHT-TTTSEEEEEEECS
T ss_pred CCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchhh----------HHHhhcC-CCCCEEEEEEECC
Confidence 357899999987 99999 9 99 99999999999999876 3455554 5799999999998
Q ss_pred C-EEEEEEEE
Q 008087 421 S-KILNFNIT 429 (578)
Q Consensus 421 g-~~~~~~v~ 429 (578)
| +.++++++
T Consensus 815 ~~~~~~~~~~ 824 (1045)
T 1k32_A 815 GGDKRDLMID 824 (1045)
T ss_dssp SSCEEEEEEE
T ss_pred CCceEEEEEE
Confidence 7 55566665
No 479
>2b0f_A Picornain 3C (protease 3C) (P3C); beta barrel, hydrolase-hydrolase inhibitor complex; HET: CA1; NMR {Human rhinovirus 14} PDB: 2in2_A
Probab=97.51 E-value=0.004 Score=57.68 Aligned_cols=145 Identities=17% Similarity=0.203 Sum_probs=89.0
Q ss_pred EEEEEEcCCEEEecccccCCCceEEEEEcCCCcEEE--EEEEEEcC---CCCEEEEEEeeCCCCCCeeeEEcCCCCCCCC
Q 008087 151 SSGFAIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYL--ATVLAIGT---ECDIAMLTVEDDEFWEGVLPVEFGELPALQD 225 (578)
Q Consensus 151 GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~g~~~~--a~vv~~d~---~~DlAlLkv~~~~~~~~~~~l~l~~~~~~g~ 225 (578)
-||.-|-+.+.|...|...+. .+.+ +++.+. -...-.|. ..||++|+++..+-..++... +.+.....+
T Consensus 25 ~t~LgI~d~~~vvP~Ha~~~~---~i~i--~g~~~~v~d~~~l~~~~~~~~eltlv~l~~~~kfRDIrkf-i~~~~~~~~ 98 (182)
T 2b0f_A 25 FTGLGIHDRVCVIPTHAQPGD---DVLV--NGQKIRVKDKYKLVDPENINLELTVLTLDRNEKFRDIRGF-ISEDLEGVD 98 (182)
T ss_dssp EEEEEEEBTEEEEESTTCCCS---EEEE--TTEEEEEEEEEEEEETTTEEEEEEEEEECCSSCBCCGGGT-BCSSCCCSE
T ss_pred EEEEEEeeeEEEEecCCCCcc---EEEE--CCEEEEeeeeeEEEcCCCCeeEEEEEECCCcccccchHHh-cCCCCCCCc
Confidence 377888999999999997653 3455 555432 12222232 579999999876433333331 222211123
Q ss_pred cEEEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCccceEEccCCeEEEEEeccccccccCCceee
Q 008087 226 AVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYV 305 (578)
Q Consensus 226 ~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~~~~~~~a 305 (578)
.+.++ +-.+.....+..|.+....... ..+.....++..+++...|.=||+|+. +|+++||+++ ++...||+
T Consensus 99 ~~lv~-n~~~~p~~~~~vg~~~~~g~i~-l~G~~t~~~~~Y~~pTk~G~CGgvl~~-~gkIlGIHva-----G~G~~Gfa 170 (182)
T 2b0f_A 99 ATLVV-HSNNFTNTILEVGPVTMAGLIN-LSSTPTNRMIRYDYATKTGQCGGVLCA-TGKIFGIHVG-----GNGRQGFS 170 (182)
T ss_dssp EEEEE-ESSSCEEEEEEEEEEEEEEEEE-ETTEEEEEEEEEESCCCTTCTTCEEEE-TTEEEEEEEE-----EETTEEEE
T ss_pred eEEEE-EcCCCceEEEEecceEEeceEc-CCCcEecceEEeccCCCCcccCCeEEe-CCCEEEEEeC-----CCCCceEe
Confidence 34444 3333232234566665543322 234344457788999999999999987 7899999999 55677887
Q ss_pred ecch
Q 008087 306 IPTP 309 (578)
Q Consensus 306 iPi~ 309 (578)
.++.
T Consensus 171 a~l~ 174 (182)
T 2b0f_A 171 AQLK 174 (182)
T ss_dssp EECC
T ss_pred hhhh
Confidence 7664
No 480
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.51 E-value=5.9e-05 Score=63.80 Aligned_cols=53 Identities=11% Similarity=0.067 Sum_probs=43.0
Q ss_pred eEEEEe----ecCCcCCCCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCe
Q 008087 493 MSSLLW----CLRSPLCLNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 493 ~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
++++.. ++|+++||++||+|++|||++|. ++.++...+++. ++.+.|++.|.+
T Consensus 33 g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r~~ 91 (106)
T 2eei_A 33 GVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKS-GSRVMFLLVDKE 91 (106)
T ss_dssp SCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHH-CSEEEEEECCTT
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEcCc
Confidence 455554 48999999999999999999998 468888888765 667888887764
No 481
>3qzr_A 3C protein; chymotrypsin-fold, beta-ribbon, hydrolysis, nucleus, hydrola hydrolase inhibitor complex; HET: AG7; 1.04A {Human enterovirus 71} SCOP: b.47.1.0 PDB: 3osy_A 3qzq_A* 3r0f_A* 3sjo_A* 3sjk_A 3sji_A* 3sj8_A* 3sj9_A
Probab=97.49 E-value=0.0071 Score=56.08 Aligned_cols=147 Identities=14% Similarity=0.164 Sum_probs=92.0
Q ss_pred EEEEEEEcCCEEEecccccCCCceEEEEEcCCCcEEEEE-E-EEEcC---CCCEEEEEEeeCCCCCCeeeEEcCCCCCCC
Q 008087 150 SSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYLAT-V-LAIGT---ECDIAMLTVEDDEFWEGVLPVEFGELPALQ 224 (578)
Q Consensus 150 ~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~g~~~~a~-v-v~~d~---~~DlAlLkv~~~~~~~~~~~l~l~~~~~~g 224 (578)
.-||+-|-+.+.|-+.|.-.+ .. |.+ +|++++.. . .-.|. ..||++|+++..+-..++... |.+.....
T Consensus 28 ~ft~LgI~dr~~vvP~Ha~~~-~~--i~i--~g~~~~v~d~~~L~~~~g~~~Elt~v~l~~~~kfRDIrkf-i~~~~~~~ 101 (187)
T 3qzr_A 28 HFTMLGVRDRLAVLPRHSQPG-KT--IWI--EHKLVNVLDAVELVDEQGVNLALTLITLDTNEKFRDITKF-IPENISTA 101 (187)
T ss_dssp EEEEEEEEBTEEEEEGGGCCC-SE--EEE--TTEEEEEEEEEECCCTTCCCCSEEEEEECSSCCBCCCGGG-SCSSCCCE
T ss_pred eEEEEEEeeeEEEEeCCCCCC-CE--EEE--CCEEEEeeeeEEEECCCCCEEEEEEEEcCCCccccchHHh-CccCcCCC
Confidence 358888989999999999433 33 555 67666531 1 11122 469999999975422233221 23322222
Q ss_pred CcEEEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCccceEEccCCeEEEEEeccccccccCCcee
Q 008087 225 DAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGY 304 (578)
Q Consensus 225 ~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~~~~~~~ 304 (578)
..+..+-+........+..|.+....... ..+......+..+++...|.=||+|+. .|+++||+.+ ++...||
T Consensus 102 ~~~~L~~ns~~~~~~~~~vG~v~~~g~in-lsg~~t~r~l~Y~~pTk~G~CGgvl~~-~gkIiGIHva-----GnG~~G~ 174 (187)
T 3qzr_A 102 SDATLVINTEHMPSMFVPVGDVVQYGFLN-LSGKPTHRTMMYNFPTKAGQCGGVVTS-VGKIIGIHIG-----GNGRQGF 174 (187)
T ss_dssp EEEEEEECCSSSCSEEEEEEEEEEEEEEE-ETTEEEEEEEEESSCCCTTCTTCEEEE-TTEEEEEEEE-----ECSSCEE
T ss_pred CceEEEEEcCCCcceEEEeccEEEeceEe-CCCCccccEEEECCCCCCCccCCeEEe-cCcEEEEEEC-----CCCCcEE
Confidence 34555555444434345567666654332 223333457888999999999999997 7999999999 5556788
Q ss_pred eecch
Q 008087 305 VIPTP 309 (578)
Q Consensus 305 aiPi~ 309 (578)
+.++.
T Consensus 175 ~a~L~ 179 (187)
T 3qzr_A 175 CAGLK 179 (187)
T ss_dssp EEECC
T ss_pred EEEee
Confidence 77654
No 482
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=97.49 E-value=3.4e-05 Score=76.39 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=48.1
Q ss_pred CCcEEEEeCCCCcccC--CCCCCCEEEEECCEEeCCCCCCccccCcchhHHHHHhccCCCCEEEEEEEECCE
Q 008087 353 KGVRIRRVDPTAPESE--VLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSK 422 (578)
Q Consensus 353 ~Gv~V~~V~p~spA~~--GL~~GDiIl~InG~~V~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~V~R~g~ 422 (578)
.|++|..|.++|||++ ||++||+|++|||++|.++.... +..++.. .|+.+.|+|.|.++
T Consensus 103 ~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e--------~v~~l~~--~g~~V~L~V~R~~~ 164 (263)
T 1z87_A 103 MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDE--------AVQALKK--TGKEVVLEVKYMKE 164 (263)
T ss_dssp EEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHH--------HHHHHHH--CCSCCCEEEECCSS
T ss_pred CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHH--------HHHHHhc--CCCeEEEEEEeCcc
Confidence 4899999999999997 89999999999999999874311 2233433 47889999999765
No 483
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=97.49 E-value=0.00014 Score=66.85 Aligned_cols=53 Identities=17% Similarity=0.115 Sum_probs=43.5
Q ss_pred eEEEEe----ecCCcCCCCCCCEEEEeCCeecCCHHH-HH-HHHHhcCCCeEEEEEecC
Q 008087 493 MSSLLW----CLRSPLCLNCFNKVLAFNGNPVKNLKS-LA-NMVENCDDEFLKFDLEYD 545 (578)
Q Consensus 493 ~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~~~~-l~-~~l~~~~~~~v~l~v~R~ 545 (578)
++++.. ++|+++||+.||+|++|||++|.++.+ +. .+++..+++.+.|++.|+
T Consensus 28 g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~vr~~ 86 (166)
T 1w9e_A 28 GIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDR 86 (166)
T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECC
T ss_pred CEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEcC
Confidence 455554 489999999999999999999999987 55 566666777999999665
No 484
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=97.43 E-value=0.00021 Score=57.99 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=40.4
Q ss_pred eEEEEe----ecCCc-CCCCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEec
Q 008087 493 MSSLLW----CLRSP-LCLNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEY 544 (578)
Q Consensus 493 ~vvvs~----v~A~~-aGl~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R 544 (578)
++++.. ++|++ +||+.||+|++|||+++. ++.++..++++. ++.+.|++.+
T Consensus 29 ~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~~ 86 (87)
T 4e34_A 29 PILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ-RGEIEFEVVY 86 (87)
T ss_dssp EEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHC-CSEEEEEEEE
T ss_pred CEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEE
Confidence 355554 47888 799999999999999995 668999999864 5568887753
No 485
>3q3y_A HEVB EV93 3C protease; cysteine trypsin-like protease, 3C cysteine protease (picorn antiviral compound 1 (AG7404); HET: XNV; 1.32A {Human enterovirus B} SCOP: b.47.1.4 PDB: 3q3x_A* 3ruo_A* 3zyd_A 3zz5_A* 3zz6_A* 3zz7_A* 3zz8_A* 3zz9_A* 3zza_A* 3zzb_A* 2ztx_A 2vb0_A 2zty_A 2ztz_A 2zu3_A* 3zye_A 3zz3_A 2zu1_A 3zz4_A 3zzc_A* ...
Probab=97.42 E-value=0.0085 Score=55.49 Aligned_cols=147 Identities=13% Similarity=0.147 Sum_probs=91.4
Q ss_pred EEEEEEEcCCEEEecccccCCCceEEEEEcCCCcEEEE-E-EEEEcC---CCCEEEEEEeeCCCCCCeeeEEcCCCCCCC
Q 008087 150 SSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYLA-T-VLAIGT---ECDIAMLTVEDDEFWEGVLPVEFGELPALQ 224 (578)
Q Consensus 150 ~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~g~~~~a-~-vv~~d~---~~DlAlLkv~~~~~~~~~~~l~l~~~~~~g 224 (578)
.-||+-|-+.++|-+.|.-. ... |.+ +|++++. . ..-.|. ..||++|+++..+-+.++.. =+.+.....
T Consensus 26 ~ft~LgI~dr~~vvPtHa~~-~~~--i~i--~G~~~~v~d~~~L~~~~g~~lElt~v~l~~~~kFRDIrk-fi~~~~~~~ 99 (191)
T 3q3y_A 26 EFTMLGIYDRWAVLPRHAKP-GPT--ILM--NDQEVGVLDAKELVDKDGTNLELTLLKLNRNEKFRDIRG-FLAREEVEV 99 (191)
T ss_dssp EEEEEEEEBTEEEEEGGGCC-CSE--EEE--TTEEEEEEEEEEEECTTCCEEEEEEEEEECSSCBCCCGG-GBCSSCCCE
T ss_pred cEEEEEEeceEEEEECCCCC-CCE--EEE--CCEEEEeeeEEEEEcCCCCEEEEEEEECCCCccccchHH-hcccccccC
Confidence 35788888999999999943 333 555 6777653 1 111233 35999999998642233332 123333333
Q ss_pred CcEEEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCccceEEccCCeEEEEEeccccccccCCcee
Q 008087 225 DAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGY 304 (578)
Q Consensus 225 ~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~~~~~~~ 304 (578)
.....+.+-.......+..|.+........ .+......+..+++...|.=||+|+. .|+++||..+ ++...||
T Consensus 100 ~~~~Lv~ns~~~p~~~~~vG~v~~~g~inl-sg~~t~r~l~Y~~pTk~G~CGgvL~~-~gkIiGIHvg-----GnG~~Gf 172 (191)
T 3q3y_A 100 NEAVLAINTSKFPNMYIPVGQVTDYGFLNL-GGTPTKRMLVYNFPTRAGQCGGVLMS-TGKVLGIHVG-----GNGHQGF 172 (191)
T ss_dssp EEEEEEECSSSSTTEEEEEEEEEEEEEEEE-TTEEEEEEEEEESCCCTTCTTCEEEE-TTEEEEEEEE-----EETTEEE
T ss_pred CceEEEEEcCCCcceEEEeccEEEcceEeC-CCCcccCEEEecCCCCCCccCCEEEe-CCCEEEEEEC-----CCCcceE
Confidence 334444444444333456676666433222 23333457888999999999999987 6999999998 5556777
Q ss_pred eecch
Q 008087 305 VIPTP 309 (578)
Q Consensus 305 aiPi~ 309 (578)
+.++.
T Consensus 173 aa~L~ 177 (191)
T 3q3y_A 173 SAALL 177 (191)
T ss_dssp EEECC
T ss_pred Eeehh
Confidence 76654
No 486
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.40 E-value=0.00012 Score=63.21 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=45.1
Q ss_pred ceEEEEee----cCCcCCCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEecCeEEEE
Q 008087 492 QMSSLLWC----LRSPLCLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEYDQVVVL 550 (578)
Q Consensus 492 ~~vvvs~v----~A~~aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R~~~~~l 550 (578)
.+++|..+ +|+ +||++||+|++|||++|.+ +.++..++++ .++.+.|+|.|.+...+
T Consensus 46 ~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~~ 108 (117)
T 2csj_A 46 TSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRK-SGKIAAIVVKRPRKVQV 108 (117)
T ss_dssp CBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHH-SCSEEEEEEEEEEECCC
T ss_pred CCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcCHHHHHHHHhc-CCCeEEEEEEECCcccc
Confidence 35666654 675 9999999999999999986 4778888887 57889999999766443
No 487
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=97.40 E-value=0.00024 Score=59.77 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=43.2
Q ss_pred eEEEEe----ecCCc-CCCCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeEEEEEecCe
Q 008087 493 MSSLLW----CLRSP-LCLNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 493 ~vvvs~----v~A~~-aGl~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
++++.. ++|++ +||+.||+|++|||++|. ++.++.+++++..+ .+.|++.|..
T Consensus 36 ~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~~~~ 95 (103)
T 2dc2_A 36 PILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRG-EIEFEVVYVA 95 (103)
T ss_dssp EEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCS-EEEEEEEECC
T ss_pred CEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC-cEEEEEEecC
Confidence 455554 47888 599999999999999996 58999999998654 7888887754
No 488
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.34 E-value=0.00011 Score=62.81 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=41.4
Q ss_pred EeecCCcCC-CCCCCEEEEeCCeecCCH--HHHHHHHHhcCCCeEEEEEecCe
Q 008087 497 LWCLRSPLC-LNCFNKVLAFNGNPVKNL--KSLANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 497 s~v~A~~aG-l~~GD~I~~VNG~~V~~~--~~l~~~l~~~~~~~v~l~v~R~~ 546 (578)
.+++|+++| |++||+|++|||++|.++ .++..+++. .++.+.|++.|+.
T Consensus 48 ~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 99 (113)
T 1um7_A 48 AGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKR-AGQSVTIVAQYRP 99 (113)
T ss_dssp SSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHS-CCSEEEEEEECCH
T ss_pred CCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCcEEEEEEECc
Confidence 345899999 999999999999999987 777777775 5778999998875
No 489
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A
Probab=97.32 E-value=0.00039 Score=55.48 Aligned_cols=42 Identities=26% Similarity=0.278 Sum_probs=30.3
Q ss_pred CCCCCccccCCC--cceEEEEEEEcCCEEEecccccCCCceEEEEE
Q 008087 135 PNFSLPWQRKRQ--YSSSSSGFAIGGRRVLTNAHSVEHYTQVKLKK 178 (578)
Q Consensus 135 ~~~~~p~~~~~~--~~~~GsGfvI~~g~ILT~aHvV~~~~~i~V~~ 178 (578)
....+||+.... ....|.|.+|++.||||+|||+.+. ..|.+
T Consensus 8 ~~~~~Pw~v~l~~~~~~~CgGslIs~~~VLTAAHC~~~~--~~v~~ 51 (80)
T 2pka_A 8 EKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHCKNDN--YEVWL 51 (80)
T ss_dssp CTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCCSC--CEEEE
T ss_pred CCCCCCcEEEEEECCceEEEEEEEcCCEEEECHHHCCCC--cEEEE
Confidence 334567766542 2357999999999999999999753 34555
No 490
>3zve_A 3C protease; hydrolase, michael inhibitor; HET: G84; 1.80A {Human enterovirus} PDB: 3zv8_A* 3zva_A* 3zvb_A* 3zv9_A* 3zvd_A* 3zvc_A* 3zvf_A* 3zvg_A*
Probab=97.31 E-value=0.0083 Score=56.03 Aligned_cols=145 Identities=16% Similarity=0.202 Sum_probs=85.9
Q ss_pred EEEEEEEcCCEEEecccccCCCceEEEEEcCCCcEEE---EEEEEEcC---CCCEEEEEEeeCCCCCCeeeEEcCCC-CC
Q 008087 150 SSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYL---ATVLAIGT---ECDIAMLTVEDDEFWEGVLPVEFGEL-PA 222 (578)
Q Consensus 150 ~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~g~~~~---a~vv~~d~---~~DlAlLkv~~~~~~~~~~~l~l~~~-~~ 222 (578)
.-||..|-+.++|.+.|...+. ++.+ +|+.+. ...+ .|. ..||++++++..+-..++... |.+. ..
T Consensus 24 ~ft~LgI~dr~~lvP~Ha~~~~---ti~i--~g~~~~v~d~~~l-~~~~~~~~Dlt~v~l~~~~kFRDIr~~-~~~~~~~ 96 (190)
T 3zve_A 24 EFTMLGVHDRVAVIPTHASVGE---TIYI--NDVETKVLDACAL-RDLTDTNLEITIVKLDRNQKFRDIRHF-LPRYEDD 96 (190)
T ss_dssp EEEEEEEEBTEEEEEGGGCCCS---EEEE--TTEEEEEEEEEEE-ECTTCCEEEEEEEEECCSSCBCCCGGG-SCSSCCC
T ss_pred EEEEEEEeCCEEEEecCCCCCc---EEEE--CCEEEEeeEEEEE-EcCCCCeEEEEEEEcCCCcccCchHHh-ccccCCC
Confidence 4578889999999999975432 3444 444432 2222 233 459999999876422333221 2222 22
Q ss_pred CCCcEEEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCccceEEccCCeEEEEEeccccccccCCc
Q 008087 223 LQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENI 302 (578)
Q Consensus 223 ~g~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~~~~~ 302 (578)
..+.+.++-... .....+..|.+........ .+.....++..+++..+|.=||||+. +|+++||..+ +....
T Consensus 97 ~~~~~l~i~s~~-~~~~~~~v~~v~~~~~i~l-~g~~~~~~~~Y~~pT~~G~CG~~li~-~gkI~GiHva-----G~G~~ 168 (190)
T 3zve_A 97 YNDAVLSVHTSK-FPNMYIPVGQVTNYGFLNL-GGTPTHRILMYNFPTRAGQCGGVVTT-TGKVIGIHVG-----GNGAQ 168 (190)
T ss_dssp EEEEEEEECSSS-CSSEEEEEEEEEEEEEEEE-TTEEEEEEEEESSCCCTTCTTCEEEE-TTEEEEEEEE-----ECSSC
T ss_pred CCCeEEEEECCC-CcceEEecccceEeceeec-CCCeeeeeEEEecCCCCCccCCeEEE-CCCEEEEEEC-----cCCCc
Confidence 233444443332 2332344555554443222 23333456788899999999999996 6999999998 44556
Q ss_pred eeeecch
Q 008087 303 GYVIPTP 309 (578)
Q Consensus 303 ~~aiPi~ 309 (578)
||+.++.
T Consensus 169 g~~~~l~ 175 (190)
T 3zve_A 169 GFAAMLL 175 (190)
T ss_dssp EEEEECC
T ss_pred eEehhhh
Confidence 7776653
No 491
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=97.31 E-value=0.00024 Score=74.61 Aligned_cols=57 Identities=11% Similarity=-0.073 Sum_probs=49.1
Q ss_pred ceEEEEe----ecCCcCCCCCCCEEEEeCCeecCC--HHHHHHHHHh-cCCCeEEEEEecCeEE
Q 008087 492 QMSSLLW----CLRSPLCLNCFNKVLAFNGNPVKN--LKSLANMVEN-CDDEFLKFDLEYDQVV 548 (578)
Q Consensus 492 ~~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~-~~~~~v~l~v~R~~~~ 548 (578)
.+++|.. ++|+++||++||+|++|||++|.+ ++++..+|+. .+++.+.|++.|+++.
T Consensus 31 ~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~~~ 94 (391)
T 3tsz_A 31 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDV 94 (391)
T ss_dssp TEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHHH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCCcc
Confidence 4566664 489999999999999999999986 9999999997 5788999999998644
No 492
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=97.28 E-value=0.0006 Score=64.06 Aligned_cols=52 Identities=12% Similarity=0.031 Sum_probs=42.3
Q ss_pred CceEEEEee----cCCcCCCCCCCEEEEeCCeecCC--HHHHHHHHHhcCCCeEEEEEec
Q 008087 491 CQMSSLLWC----LRSPLCLNCFNKVLAFNGNPVKN--LKSLANMVENCDDEFLKFDLEY 544 (578)
Q Consensus 491 ~~~vvvs~v----~A~~aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~~~~~~v~l~v~R 544 (578)
+.+++|..+ +|++ ||+.||+|++|||++|.+ +.+...+++... +.+.|.+.|
T Consensus 23 ~~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~r 80 (195)
T 2qbw_A 23 DDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ-NTVELIIVR 80 (195)
T ss_dssp CCSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEEEE
T ss_pred CCCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEE
Confidence 356777654 7899 999999999999999987 567777777654 489999988
No 493
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=97.28 E-value=5.9e-05 Score=72.58 Aligned_cols=49 Identities=6% Similarity=0.050 Sum_probs=43.8
Q ss_pred eecCCcCCCCCCCEEEEeCCeecC--CHHHHHHHHHhcCCCeE-EEEEecCeE
Q 008087 498 WCLRSPLCLNCFNKVLAFNGNPVK--NLKSLANMVENCDDEFL-KFDLEYDQV 547 (578)
Q Consensus 498 ~v~A~~aGl~~GD~I~~VNG~~V~--~~~~l~~~l~~~~~~~v-~l~v~R~~~ 547 (578)
+++|+++||+.||+|++|||++|. ++.++.++|+.. ++.+ .|++.|++.
T Consensus 43 gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~-g~~v~~l~V~R~g~ 94 (216)
T 2krg_A 43 DSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG-GDETKLLVVDRETD 94 (216)
T ss_dssp TSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHH-CSEEEEEECCHHHH
T ss_pred CChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhc-CCeEEEEEEEECCE
Confidence 458999999999999999999999 999999999987 7778 888888763
No 494
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=97.28 E-value=3.8e-05 Score=78.97 Aligned_cols=53 Identities=9% Similarity=0.137 Sum_probs=0.0
Q ss_pred EEEeecCCcCCCCCCCEEEEeCCeecCCHHHHHHHHHhcCCCeEEEEEecCeEEE
Q 008087 495 SLLWCLRSPLCLNCFNKVLAFNGNPVKNLKSLANMVENCDDEFLKFDLEYDQVVV 549 (578)
Q Consensus 495 vvs~v~A~~aGl~~GD~I~~VNG~~V~~~~~l~~~l~~~~~~~v~l~v~R~~~~~ 549 (578)
+..+++|+++||++||+|++|||++|.++.+|.++++. ++.+.|++.|+++.+
T Consensus 261 v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~--~~~v~l~v~R~g~~~ 313 (332)
T 3num_A 261 VIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKR--ESTLNMVVRRGNEDI 313 (332)
T ss_dssp -------------------------------------------------------
T ss_pred eccCCChHHcCCCCCCEEEEECCEECCCHHHHHHHHhC--CCeEEEEEEECCEEE
Confidence 34466899999999999999999999999999999985 678999999987653
No 495
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=97.27 E-value=0.00027 Score=61.01 Aligned_cols=53 Identities=15% Similarity=0.116 Sum_probs=41.1
Q ss_pred eEEEEe----ecCCcCC-CCCCCEEEEeCCeecCCHHHH--HHHHHhcCCCeEEEEEecCe
Q 008087 493 MSSLLW----CLRSPLC-LNCFNKVLAFNGNPVKNLKSL--ANMVENCDDEFLKFDLEYDQ 546 (578)
Q Consensus 493 ~vvvs~----v~A~~aG-l~~GD~I~~VNG~~V~~~~~l--~~~l~~~~~~~v~l~v~R~~ 546 (578)
++++.. ++|+++| |++||+|++|||++|.++.++ ...++. .++.+.|++.|+.
T Consensus 39 gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 98 (119)
T 1tp5_A 39 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTIIAQYKP 98 (119)
T ss_dssp CEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEECH
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 465554 4899999 999999999999999988543 344443 5778999998764
No 496
>1cqq_A Type 2 rhinovirus 3C protease; viral protein, hydrolase; HET: AG7; 1.85A {Human rhinovirus 2} SCOP: b.47.1.4 PDB: 2xya_A*
Probab=97.25 E-value=0.017 Score=53.57 Aligned_cols=147 Identities=13% Similarity=0.128 Sum_probs=87.7
Q ss_pred EEEEEEEcCCEEEecccccCCCceEEEEEcCCCcEEEEE--EEEEcC---CCCEEEEEEeeCCCCCCeeeEEcCCCCCCC
Q 008087 150 SSSGFAIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYLAT--VLAIGT---ECDIAMLTVEDDEFWEGVLPVEFGELPALQ 224 (578)
Q Consensus 150 ~GsGfvI~~g~ILT~aHvV~~~~~i~V~~~~~g~~~~a~--vv~~d~---~~DlAlLkv~~~~~~~~~~~l~l~~~~~~g 224 (578)
..|+.-|.+.++|...|...+. .+.+ +|+.+.-. ...+|+ ..||+|++++..+-..++.. -+.+.....
T Consensus 24 ~~t~Lgi~~~~~lvP~Ha~~~~---~i~i--~g~~v~i~d~~~l~d~~g~~~El~lv~l~~~~kfrDi~k-fip~~~~~~ 97 (180)
T 1cqq_A 24 KFTGLGVYDRFVVVPTHADPGK---EIQV--DGITTKVIDSYDLYNKNGIKLEITVLKLDRNEKFRDIRR-YIPNNEDDY 97 (180)
T ss_dssp EEEEEEEEBTEEEEEGGGCCCS---EEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEECSSCCBCCGGG-GSCSSCCCE
T ss_pred cEEEEEEeeEEEEEccCcCccc---EEEE--CCEEEEeccceEEEcCCCCeEEEEEEEcCCccccCccHh-hcCCCcCCC
Confidence 3778888899999999998864 3444 45544322 223343 36999999987542223332 122222111
Q ss_pred CcEEEEeecCCCCcceEEEeEEeceeeeeecCCceeeeEEEEecCCCCCCccceEEccCCeEEEEEeccccccccCCcee
Q 008087 225 DAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGY 304 (578)
Q Consensus 225 ~~V~~iG~p~g~~~~sv~~G~Is~~~~~~~~~~~~~~~~i~~da~i~~G~SGGPlvn~~G~vVGI~~~~~~~~~~~~~~~ 304 (578)
...+.+-+-.......+..|.+...+.... .+.....++..+++...|.=||+|+.. |+++||+.+ ++...||
T Consensus 98 ~~~~l~~n~~~~~~~~v~~g~~~~~g~i~~-~g~~~~r~l~Y~~pT~~G~CGsvl~~~-gkIiGIHvA-----G~G~~G~ 170 (180)
T 1cqq_A 98 PNCNLALLANQPEPTIINVGDVVSYGNILL-SGNQTARMLKYSYPTKSGYCGGVLYKI-GQVLGIHVG-----GNGRDGF 170 (180)
T ss_dssp EEEEEEECTTSSSCEEEEEEEEEECCCEEE-TTEEECSEEEECCCCCTTCTTCEEEET-TEEEEEEEE-----ECSSCEE
T ss_pred CceEEEEEcCCCceEEEEccceeeeeeEec-CCcEeccEEEecCCCCCCcCCCeEEEC-CCEEEEEEC-----CCCCcEE
Confidence 223333333322322355565554332211 233333568889999999999999974 799999999 4556788
Q ss_pred eecch
Q 008087 305 VIPTP 309 (578)
Q Consensus 305 aiPi~ 309 (578)
+.++.
T Consensus 171 aa~l~ 175 (180)
T 1cqq_A 171 SAMLL 175 (180)
T ss_dssp EEECC
T ss_pred Eeeee
Confidence 77653
No 497
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=96.29 E-value=5.1e-05 Score=65.14 Aligned_cols=48 Identities=17% Similarity=0.141 Sum_probs=38.8
Q ss_pred EEEeecCCc-CCCCCCCEEEEeCCeec--CCHHHHHHHHHhcCCCeEEEEEe
Q 008087 495 SLLWCLRSP-LCLNCFNKVLAFNGNPV--KNLKSLANMVENCDDEFLKFDLE 543 (578)
Q Consensus 495 vvs~v~A~~-aGl~~GD~I~~VNG~~V--~~~~~l~~~l~~~~~~~v~l~v~ 543 (578)
+..+++|++ +||++||+|++|||++| .++.++.+++++..+. +.|+|.
T Consensus 60 V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~-v~l~V~ 110 (112)
T 2lob_A 60 IHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGE-IEFEVV 110 (112)
Confidence 345678999 99999999999999999 5688999999865444 777653
No 498
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=97.20 E-value=0.00026 Score=78.34 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=48.4
Q ss_pred ceEEEEee----cCCcCCCCCCCEEEEeCCeecCCHHHHHHHHHhc-CCCeEEEEEecCeEEE
Q 008087 492 QMSSLLWC----LRSPLCLNCFNKVLAFNGNPVKNLKSLANMVENC-DDEFLKFDLEYDQVVV 549 (578)
Q Consensus 492 ~~vvvs~v----~A~~aGl~~GD~I~~VNG~~V~~~~~l~~~l~~~-~~~~v~l~v~R~~~~~ 549 (578)
++++|..+ +|+++||++||+|++|||++| +..+|.++|++. +++.+.|+|.|+++..
T Consensus 496 ~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v-~~~~l~~~l~~~~~g~~v~l~v~R~g~~~ 557 (597)
T 4fgm_A 496 QGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQA-TEQSVKRILERYIPGDTVTIHAFRRDELM 557 (597)
T ss_dssp TEEEEEEECTTSHHHHHTCCTTCEEEEETTEEC-CTTTHHHHHTTCCTTCEEEEEEEETTEEE
T ss_pred CeEEEEEeCCCChHHHCCCCCCCEEEEECCEEC-CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 45666654 899999999999999999999 689999999874 6789999999987653
No 499
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=97.18 E-value=0.00055 Score=74.44 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=60.1
Q ss_pred ccCCcccccccChhhhhhhccc-----------------cCCCCcEEEEeCCCCcccC-CCCCCCEEEEECCEEeCCCCC
Q 008087 328 PLLGVEWQKMENPDLRVAMSMK-----------------ADQKGVRIRRVDPTAPESE-VLKPSDIILSFDGIDIANDGT 389 (578)
Q Consensus 328 ~~lGi~~~~~~~~~~~~~lgl~-----------------~~~~Gv~V~~V~p~spA~~-GL~~GDiIl~InG~~V~~~~~ 389 (578)
.+.|+.|+++ +..+.+.++.. .+.+|++|..|.+++++.. |++.||+|++|||++|.+..+
T Consensus 374 ~~~Gl~f~~L-t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s~~~ 452 (539)
T 4fln_A 374 IVAGLVFTPL-SEPLIEEECEDTIGLKLLTKARYSVARFRGEQIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNIHH 452 (539)
T ss_dssp CSTTEEEEEC-CHHHHTTSCSSSSCHHHHHHHHHCCCSSTTCCCEEEEEECCCGGGTTCSSCCSEEEEEETTEECCSHHH
T ss_pred cccceEEeeC-CHHHHHhhcccccCceeeehhhhhhhccCCceEEEEEEecCCchhhhcCCCCCCEEEeECCEEcCCHHH
Confidence 4678999888 66655543321 2356899999999999999 999999999999999999988
Q ss_pred CccccCcchhHHHHHhccCCCCEEEEEE
Q 008087 390 VPFRHGERIGFSYLVSQKYTGDSAAVKV 417 (578)
Q Consensus 390 v~~~~~~~~~~~~~~~~~~~g~~v~l~V 417 (578)
|.+++... .++.+.+++
T Consensus 453 ----------l~~~l~~~-k~~~l~~~~ 469 (539)
T 4fln_A 453 ----------LAHLIDMC-KDKYLVFEF 469 (539)
T ss_dssp ----------HHHHHHTC-CSSEEEEEE
T ss_pred ----------HHHHHHHc-CCCeEEEEE
Confidence 66777664 455555553
No 500
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=97.10 E-value=0.00052 Score=73.33 Aligned_cols=56 Identities=9% Similarity=-0.085 Sum_probs=48.4
Q ss_pred ceEEEEe----ecCCcCCCCCCCEEEEeCCeecCC--HHHHHHHHHhc-CCCeEEEEEecCeE
Q 008087 492 QMSSLLW----CLRSPLCLNCFNKVLAFNGNPVKN--LKSLANMVENC-DDEFLKFDLEYDQV 547 (578)
Q Consensus 492 ~~vvvs~----v~A~~aGl~~GD~I~~VNG~~V~~--~~~l~~~l~~~-~~~~v~l~v~R~~~ 547 (578)
.+++|.. ++|+++||+.||+|++|||++|.+ +.++..+|+.. +++.+.|++.|+++
T Consensus 23 ~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g~ 85 (468)
T 3shw_A 23 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKD 85 (468)
T ss_dssp TEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCc
Confidence 4566664 489999999999999999999987 99999999985 67899999999764
Done!