Query 008088
Match_columns 578
No_of_seqs 261 out of 593
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 17:51:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008088.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008088hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 2.8E-29 9.6E-34 228.5 14.1 113 115-227 7-121 (130)
2 4i1k_A B3 domain-containing tr 99.7 1.8E-17 6E-22 153.9 10.4 98 118-225 45-144 (146)
3 1yel_A AT1G16640; CESG, protei 99.5 1.8E-14 6.2E-19 125.6 9.7 95 118-223 7-101 (104)
4 1na6_A Ecorii, restriction end 93.2 0.11 3.9E-06 55.1 6.4 93 118-211 17-123 (404)
5 2jng_A Cullin-7, CUL-7; P53 bi 66.9 4.3 0.00015 35.8 3.6 73 272-359 6-78 (105)
6 3p8d_A Medulloblastoma antigen 43.0 24 0.00083 28.6 4.0 54 285-357 3-56 (67)
7 3s6w_A Tudor domain-containing 38.6 31 0.0011 25.9 3.8 27 288-318 1-27 (54)
8 3qii_A PHD finger protein 20; 34.3 42 0.0015 28.5 4.3 53 286-357 19-71 (85)
9 1mhn_A SurviVal motor neuron p 33.2 36 0.0012 26.1 3.5 28 287-318 2-29 (59)
10 3o27_A Putative uncharacterize 32.7 40 0.0014 27.6 3.7 34 192-225 31-65 (68)
11 4a4f_A SurviVal of motor neuro 31.7 36 0.0012 26.7 3.3 43 285-340 5-47 (64)
12 3h8z_A FragIle X mental retard 31.5 62 0.0021 29.3 5.2 60 258-318 27-90 (128)
13 2equ_A PHD finger protein 20-l 29.0 45 0.0015 27.3 3.5 40 286-340 7-46 (74)
14 2e63_A KIAA1787 protein; struc 28.4 34 0.0012 32.1 3.1 24 197-220 115-138 (170)
15 3m7a_A Uncharacterized protein 27.4 53 0.0018 30.0 4.1 47 159-208 83-140 (140)
16 2kfw_A FKBP-type peptidyl-prol 26.7 90 0.0031 29.8 5.8 103 199-318 2-113 (196)
17 3pie_A 5'->3' exoribonuclease 24.8 88 0.003 37.6 6.2 47 287-342 1064-1110(1155)
18 1g5v_A SurviVal motor neuron p 23.9 59 0.002 27.4 3.4 29 286-318 8-36 (88)
19 2cbp_A Cucumber basic protein; 23.0 34 0.0012 29.0 1.8 19 194-212 18-36 (96)
20 2ldm_A Uncharacterized protein 28.5 18 0.00061 30.5 0.0 40 285-339 3-42 (81)
21 3cgm_A SLYD, peptidyl-prolyl C 21.6 80 0.0027 29.0 4.2 99 200-318 3-109 (158)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=2.8e-29 Score=228.53 Aligned_cols=113 Identities=32% Similarity=0.561 Sum_probs=104.4
Q ss_pred CCcceeEEEEecccccCCCCCceeEccccccccCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEcCCCcceEeccchhhh
Q 008088 115 EENNVVAFAKILTPSDANNGGGFSVPRFCADSIFPPLNYQVDPPVQNISVTDIHGAVWEFRHIYRGTPRRHLLTTGWSKF 194 (578)
Q Consensus 115 ~~~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~prr~lLTtGWs~F 194 (578)
..+...+|.|+||+|||+++++|+||+++|+.|||.++..+..+.++|.++|.+|++|+|||+||+++++|+|++||+.|
T Consensus 7 ~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~F 86 (130)
T 1wid_A 7 GRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRF 86 (130)
T ss_dssp -CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHH
T ss_pred CCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHH
Confidence 44578899999999999999999999999999999999876678899999999999999999999999999999999999
Q ss_pred hhccCCcCCCEEEEEEcCC--CcEEEEEEEccCCC
Q 008088 195 VNRKKLIAGDSVVFMRDSR--GKMYIGLRRSVRYG 227 (578)
Q Consensus 195 V~~K~L~aGD~VvF~R~~~--G~l~VgIRRa~r~~ 227 (578)
|++|+|++||+|+|++.++ +.|+|++||+.+..
T Consensus 87 V~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 87 VKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 9999999999999999764 57999999998765
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.71 E-value=1.8e-17 Score=153.94 Aligned_cols=98 Identities=22% Similarity=0.304 Sum_probs=86.6
Q ss_pred ceeEEEEecccccCCCCCceeEccccccccCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEcCCCcceEeccchhhhhhc
Q 008088 118 NVVAFAKILTPSDANNGGGFSVPRFCADSIFPPLNYQVDPPVQNISVTDIHGAVWEFRHIYRGTPRRHLLTTGWSKFVNR 197 (578)
Q Consensus 118 ~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~prr~lLTtGWs~FV~~ 197 (578)
..++|.|+||+||+.++..|.||+++++.+||..+ +.+.++|. |+.|+|+|+|++. ++.|++||..||++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d 114 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE 114 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHH
Confidence 56799999999999987789999999999999753 46778888 6999999999874 69999999999999
Q ss_pred cCCcCCCEEEEEEcCCC--cEEEEEEEccC
Q 008088 198 KKLIAGDSVVFMRDSRG--KMYIGLRRSVR 225 (578)
Q Consensus 198 K~L~aGD~VvF~R~~~G--~l~VgIRRa~r 225 (578)
++|++||+|+|....+. .+.|.|.|+..
T Consensus 115 n~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp TTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred cCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence 99999999999997655 69999999863
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.54 E-value=1.8e-14 Score=125.64 Aligned_cols=95 Identities=23% Similarity=0.453 Sum_probs=82.3
Q ss_pred ceeEEEEecccccCCCCCceeEccccccccCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEcCCCcceEeccchhhhhhc
Q 008088 118 NVVAFAKILTPSDANNGGGFSVPRFCADSIFPPLNYQVDPPVQNISVTDIHGAVWEFRHIYRGTPRRHLLTTGWSKFVNR 197 (578)
Q Consensus 118 ~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~prr~lLTtGWs~FV~~ 197 (578)
..+.|.|+|+++|. ..+|.||++.++.+.+.+. ..+.++|..|++|++++.+++ ++.+|++||.+||++
T Consensus 7 ~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~ 75 (104)
T 1yel_A 7 GEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKD 75 (104)
T ss_dssp CCEEEEEECCHHHH--TTCEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHH
T ss_pred CCCCEEEEECCCCc--cceEECCHHHHHhcCccCC-------CEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHH
Confidence 44689999999994 3499999999988655432 468889999999999999874 468999999999999
Q ss_pred cCCcCCCEEEEEEcCCCcEEEEEEEc
Q 008088 198 KKLIAGDSVVFMRDSRGKMYIGLRRS 223 (578)
Q Consensus 198 K~L~aGD~VvF~R~~~G~l~VgIRRa 223 (578)
++|++||.|+|...++..+.|-|-|.
T Consensus 76 ~~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 76 NNLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp HTCCTTCEEEEEECSSSEEEEEEECS
T ss_pred cCCCCCCEEEEEEcCCCeEEEEEECC
Confidence 99999999999999999999999875
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=93.18 E-value=0.11 Score=55.14 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=67.4
Q ss_pred ceeEEEEecccccCCCC----CceeEccccccccCCCCCC-CCCCCceEEEEE--eCCCCeEEEEEEEcC------CCcc
Q 008088 118 NVVAFAKILTPSDANNG----GGFSVPRFCADSIFPPLNY-QVDPPVQNISVT--DIHGAVWEFRHIYRG------TPRR 184 (578)
Q Consensus 118 ~~~~F~K~LT~SDv~~~----grfsVPk~~Ae~~FP~Ld~-~~~~p~q~L~~~--D~~G~~W~Fr~~yrg------~prr 184 (578)
....|+|.|++.|++.. .++.+|+..+..+||.|+- .+..+.+.+.+. |...-++.++.+|.+ +...
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred cchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCc
Confidence 56789999999999854 4699999889999999983 344566666654 333344599999986 4456
Q ss_pred eEeccchh-hhhhccCCcCCCEEEEEEc
Q 008088 185 HLLTTGWS-KFVNRKKLIAGDSVVFMRD 211 (578)
Q Consensus 185 ~lLTtGWs-~FV~~K~L~aGD~VvF~R~ 211 (578)
|.||. |. .+.-.....+||.++|-+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred eEEee-cCCCCcccccCCCCCEEEEEEe
Confidence 88873 22 3444577789999888764
No 5
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=66.93 E-value=4.3 Score=35.80 Aligned_cols=73 Identities=22% Similarity=0.297 Sum_probs=51.7
Q ss_pred CceEEeHHHHHhhhccCcccccEEEEeeeccCCCceeeEEEEEEecCCCCCCCCCCCCCCceeeccCccccccCCCCcCC
Q 008088 272 ADFIVRAEVVDSAMRVFWTAGMRVKMVVETEDSSRMTWIQGTVTAASMPDRGPWCGSPWGMLEVTWDEPEILQNAKRVSP 351 (578)
Q Consensus 272 ~EFvV~~~~y~~a~~~~w~~GmRFkM~fE~EDssr~~w~~GTI~~v~~~dp~rWp~S~WR~L~V~WDe~~~~~~~~RVSP 351 (578)
+||- .++.|-..++.+.+||||+||.=..|+-+..- .|++. ++ .+-. + ..||.|..... .-+|+-
T Consensus 6 sdF~-s~~~Ya~YVr~~l~pGM~VR~~~dyeev~~GD--~G~vl-~s-~~Gl-----~--~vQv~W~~~G~---TyWV~~ 70 (105)
T 2jng_A 6 SEFA-SGNTYALYVRDTLQPGMRVRMLDDYEEISAGD--EGEFR-QS-NNGV-----P--PVQVFWESTGR---TYWVHW 70 (105)
T ss_dssp GGSS-SSHHHHHHHHHHCCTTCEEEECSCBTTBCTTC--EEEEE-EE-CTTS-----S--EEEEEETTTTE---EEEEEG
T ss_pred hhcc-cchhHHHHHHhcCCCccEEeeehhhhhhccCC--ceeEE-ec-CCCC-----c--cceeeehhcCc---eEEEEe
Confidence 3443 56789999999999999999986666655432 78888 44 3222 2 89999997654 466766
Q ss_pred cceeecCC
Q 008088 352 WQIEFVSP 359 (578)
Q Consensus 352 WeIEpv~~ 359 (578)
=.||++..
T Consensus 71 ~~~Ellg~ 78 (105)
T 2jng_A 71 HMLEILGF 78 (105)
T ss_dssp GGEEECCC
T ss_pred ehhhhcCC
Confidence 67777753
No 6
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=43.00 E-value=24 Score=28.64 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=37.2
Q ss_pred hccCcccccEEEEeeeccCCCceeeEEEEEEecCCCCCCCCCCCCCCceeeccCccccccCCCCcCCcceeec
Q 008088 285 MRVFWTAGMRVKMVVETEDSSRMTWIQGTVTAASMPDRGPWCGSPWGMLEVTWDEPEILQNAKRVSPWQIEFV 357 (578)
Q Consensus 285 ~~~~w~~GmRFkM~fE~EDssr~~w~~GTI~~v~~~dp~rWp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEpv 357 (578)
|...|++|+++--+| + | .+||-++|++|... ....|..++.. .+.|..=+|.|+
T Consensus 3 ~~~~~~vGd~vmArW-~-D---~~yYpA~I~si~~~----------~~Y~V~F~dG~----~etvk~~~ikp~ 56 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-S-D---CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAF 56 (67)
T ss_dssp --CCCCTTCEEEEEC-T-T---SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEEC
T ss_pred cCcccccCCEEEEEc-C-C---CCEeeEEEEEECCC----------CeEEEEEeCCc----eEEEeHHHcccC
Confidence 556899999999999 3 4 25899999999732 45889999832 344444444443
No 7
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=38.56 E-value=31 Score=25.93 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=21.7
Q ss_pred CcccccEEEEeeeccCCCceeeEEEEEEecC
Q 008088 288 FWTAGMRVKMVVETEDSSRMTWIQGTVTAAS 318 (578)
Q Consensus 288 ~w~~GmRFkM~fE~EDssr~~w~~GTI~~v~ 318 (578)
.|.+|+..--.|..+. .||.++|.++.
T Consensus 1 ~wk~G~~c~A~~s~Dg----~wYrA~I~~i~ 27 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN----KFYRAEVEALH 27 (54)
T ss_dssp CCCTTCEEEEEETTTT----EEEEEEEEEC-
T ss_pred CCCCCCEEEEEECCCC----CEEEEEEEEEe
Confidence 4999999999984333 69999999986
No 8
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=34.28 E-value=42 Score=28.51 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=37.0
Q ss_pred ccCcccccEEEEeeeccCCCceeeEEEEEEecCCCCCCCCCCCCCCceeeccCccccccCCCCcCCcceeec
Q 008088 286 RVFWTAGMRVKMVVETEDSSRMTWIQGTVTAASMPDRGPWCGSPWGMLEVTWDEPEILQNAKRVSPWQIEFV 357 (578)
Q Consensus 286 ~~~w~~GmRFkM~fE~EDssr~~w~~GTI~~v~~~dp~rWp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEpv 357 (578)
...|.+|+++--+| + | .+||-++|++|... ....|.+++.. .+.|.+=+|.|+
T Consensus 19 ~~~f~vGd~VlArW-~-D---~~yYPAkI~sV~~~----------~~YtV~F~DG~----~etvk~~~IKp~ 71 (85)
T 3qii_A 19 SSEFQINEQVLACW-S-D---CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAF 71 (85)
T ss_dssp --CCCTTCEEEEEC-T-T---SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEEC
T ss_pred CcccccCCEEEEEe-C-C---CCEeeEEEEEECCC----------CeEEEEEeCCC----eEEecHHHcccC
Confidence 45899999999999 3 4 25999999999832 35899999933 244444445444
No 9
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=33.22 E-value=36 Score=26.15 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=22.9
Q ss_pred cCcccccEEEEeeeccCCCceeeEEEEEEecC
Q 008088 287 VFWTAGMRVKMVVETEDSSRMTWIQGTVTAAS 318 (578)
Q Consensus 287 ~~w~~GmRFkM~fE~EDssr~~w~~GTI~~v~ 318 (578)
..|.+|+.+...|. +|. .||.++|.++.
T Consensus 2 ~~~~~G~~c~A~~s-~Dg---~wYrA~I~~i~ 29 (59)
T 1mhn_A 2 QQWKVGDKCSAIWS-EDG---CIYPATIASID 29 (59)
T ss_dssp CCCCTTCEEEEECT-TTS---CEEEEEEEEEE
T ss_pred CcCCcCCEEEEEEC-CCC---CEEEEEEEEEc
Confidence 46999999999884 342 59999999996
No 10
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=32.67 E-value=40 Score=27.59 Aligned_cols=34 Identities=9% Similarity=0.279 Sum_probs=29.6
Q ss_pred hhhhhccCCcCCCEEEEEEc-CCCcEEEEEEEccC
Q 008088 192 SKFVNRKKLIAGDSVVFMRD-SRGKMYIGLRRSVR 225 (578)
Q Consensus 192 s~FV~~K~L~aGD~VvF~R~-~~G~l~VgIRRa~r 225 (578)
.+++++-+|+.||.+...-+ .+|++.+..+|-++
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk 65 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKE 65 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGG
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhh
Confidence 48999999999999999885 58889999999664
No 11
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=31.73 E-value=36 Score=26.68 Aligned_cols=43 Identities=14% Similarity=0.218 Sum_probs=30.7
Q ss_pred hccCcccccEEEEeeeccCCCceeeEEEEEEecCCCCCCCCCCCCCCceeeccCcc
Q 008088 285 MRVFWTAGMRVKMVVETEDSSRMTWIQGTVTAASMPDRGPWCGSPWGMLEVTWDEP 340 (578)
Q Consensus 285 ~~~~w~~GmRFkM~fE~EDssr~~w~~GTI~~v~~~dp~rWp~S~WR~L~V~WDe~ 340 (578)
....|.+|+.+.-.|.. |. .||.++|.++... . ....|...+=
T Consensus 5 ~~~~~~vGd~c~A~~s~-Dg---~wYrA~I~~v~~~-~--------~~~~V~fvdY 47 (64)
T 4a4f_A 5 PTHSWKVGDKCMAVWSE-DG---QCYEAEIEEIDEE-N--------GTAAITFAGY 47 (64)
T ss_dssp CSSCCCTTCEEEEECTT-TS---SEEEEEEEEEETT-T--------TEEEEEETTT
T ss_pred cCCCCCCCCEEEEEECC-CC---CEEEEEEEEEcCC-C--------CEEEEEEEec
Confidence 34679999999999943 32 5999999999732 1 2456766654
No 12
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=31.50 E-value=62 Score=29.27 Aligned_cols=60 Identities=10% Similarity=0.049 Sum_probs=39.7
Q ss_pred CCCEEEEEecCCCCCceEEeHHHHHh----hhccCcccccEEEEeeeccCCCceeeEEEEEEecC
Q 008088 258 GLPFEVVYYPRAGWADFIVRAEVVDS----AMRVFWTAGMRVKMVVETEDSSRMTWIQGTVTAAS 318 (578)
Q Consensus 258 g~~F~V~Y~Pra~~~EFvV~~~~y~~----a~~~~w~~GmRFkM~fE~EDssr~~w~~GTI~~v~ 318 (578)
...++|.|.--. .++-.|+.+.+.- +....++.|+.|......+|...-.||.|+|+.+.
T Consensus 27 ~d~~~V~f~n~w-~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~k 90 (128)
T 3h8z_A 27 EDSVTIFFENNW-QSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMK 90 (128)
T ss_dssp SSEEEEEETTCT-TCCEEEEGGGEECCCCC----CCCTTCEEEEEECC---CCCEEEEEEEEEEE
T ss_pred CCcEEEEEcccc-CcceEechhhEEcCCCcccccCCCCCCEEEEEecCCCCCcCccEEEEEEEee
Confidence 344888886431 2377787766653 23357899999999887766444579999999986
No 13
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.99 E-value=45 Score=27.33 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=30.9
Q ss_pred ccCcccccEEEEeeeccCCCceeeEEEEEEecCCCCCCCCCCCCCCceeeccCcc
Q 008088 286 RVFWTAGMRVKMVVETEDSSRMTWIQGTVTAASMPDRGPWCGSPWGMLEVTWDEP 340 (578)
Q Consensus 286 ~~~w~~GmRFkM~fE~EDssr~~w~~GTI~~v~~~dp~rWp~S~WR~L~V~WDe~ 340 (578)
...|.+|+++.-.|. |. .||-++|.+|... ....|..++-
T Consensus 7 ~~~~kvGd~clA~ws--Dg---~~Y~A~I~~v~~~----------~~~~V~f~Dy 46 (74)
T 2equ_A 7 GFDFKAGEEVLARWT--DC---RYYPAKIEAINKE----------GTFTVQFYDG 46 (74)
T ss_dssp CCCCCTTCEEEEECS--SS---SEEEEEEEEESTT----------SSEEEEETTS
T ss_pred CCCCCCCCEEEEECC--CC---CEEEEEEEEECCC----------CEEEEEEecC
Confidence 457999999999997 42 5999999999621 3467887764
No 14
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.39 E-value=34 Score=32.06 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.0
Q ss_pred ccCCcCCCEEEEEEcCCCcEEEEE
Q 008088 197 RKKLIAGDSVVFMRDSRGKMYIGL 220 (578)
Q Consensus 197 ~K~L~aGD~VvF~R~~~G~l~VgI 220 (578)
-..|.+||.|-|++..+|+|.+.|
T Consensus 115 l~~l~~Gd~ig~~~~~~G~l~~~i 138 (170)
T 2e63_A 115 LDQLGEGDRVGVERTVAGELRLWV 138 (170)
T ss_dssp GGGCCSSCCEEEEECTTSCEEEEE
T ss_pred ccccCCCCEEEEEEcCCcEEEEEE
Confidence 345789999999999999999886
No 15
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=27.41 E-value=53 Score=29.98 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=33.8
Q ss_pred ceEEEEEeCCCCeEEEEEEEc---------CCCcceEe--ccchhhhhhccCCcCCCEEEE
Q 008088 159 VQNISVTDIHGAVWEFRHIYR---------GTPRRHLL--TTGWSKFVNRKKLIAGDSVVF 208 (578)
Q Consensus 159 ~q~L~~~D~~G~~W~Fr~~yr---------g~prr~lL--TtGWs~FV~~K~L~aGD~VvF 208 (578)
..++.+.|..|++=....--. ..+-+|+| ..|| ..+.++++||.|.|
T Consensus 83 PLDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~---~~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 83 PLDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGL---AARLGIKPGDKVEW 140 (140)
T ss_dssp CEEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTH---HHHHTCCTTCEEEC
T ss_pred ceEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcCh---HHHcCCCCCCEEeC
Confidence 367888898888777654221 12346888 6887 68899999999875
No 16
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=26.65 E-value=90 Score=29.77 Aligned_cols=103 Identities=17% Similarity=0.098 Sum_probs=60.9
Q ss_pred CCcCCCEEEE-EE--cCCCcEEEEEEEccCCCCCCCCCCcccccCccCCHHHHHHHHHHHHcCCCEEEEEecCCC-----
Q 008088 199 KLIAGDSVVF-MR--DSRGKMYIGLRRSVRYGNNGDSAGARWREQTGMKAEAVAVAVERAVLGLPFEVVYYPRAG----- 270 (578)
Q Consensus 199 ~L~aGD~VvF-~R--~~~G~l~VgIRRa~r~~~~~~~~~~~~~~~~~~~~~~v~~A~~~aa~g~~F~V~Y~Pra~----- 270 (578)
..+.||.|.+ |. ..+|+++-.-+.. .|.. ..-....+ +..+-+|......|..++|..-|-..
T Consensus 2 ~i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~--f~lG~g~v-ipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~ 72 (196)
T 2kfw_A 2 KVAKDLVVSLAYQVRTEDGVLVDESPVS------APLD--YLHGHGSL-ISGLETALEGHEVGDKFDVAVGANDAYGQYD 72 (196)
T ss_dssp CCCSSCEEEEEEEEEETTTEEEEECCTT------SCCE--EESSSSSS-CHHHHHHHSSSCTTCEEEEECSTTTTSSCCC
T ss_pred CCCCCCEEEEEEEEEECCCCEEEecCCC------CCEE--EEECCCCc-chHHHHHHcCCCCCCEEEEEeCcHHhcCCCC
Confidence 3678999876 33 3577755433211 1111 00001123 23466666666778888887665432
Q ss_pred -CCceEEeHHHHHhhhccCcccccEEEEeeeccCCCceeeEEEEEEecC
Q 008088 271 -WADFIVRAEVVDSAMRVFWTAGMRVKMVVETEDSSRMTWIQGTVTAAS 318 (578)
Q Consensus 271 -~~EFvV~~~~y~~a~~~~w~~GmRFkM~fE~EDssr~~w~~GTI~~v~ 318 (578)
-.=+.|+++.+.. ...+.+||+|.+ ++++. -+.++|+.|.
T Consensus 73 ~~lV~~vp~~~f~~--~~~~~~G~~~~~--~~~~G----~~~~~V~~v~ 113 (196)
T 2kfw_A 73 ENLVQRVPKDVFMG--VDELQVGMRFLA--ETDQG----PVPVEITAVE 113 (196)
T ss_dssp TTTCEEECGGGCCC--SSCCCTTCEEEE--EETTE----EEEEEBCCCC
T ss_pred hhhEEEEEHHHCCC--ccCcccCCEEEE--ECCCC----cEEEEEEEEc
Confidence 3347788888853 246899999964 55553 2689999887
No 17
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=24.75 E-value=88 Score=37.63 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=34.2
Q ss_pred cCcccccEEEEeeeccCCCceeeEEEEEEecCCCCCCCCCCCCCCceeeccCcccc
Q 008088 287 VFWTAGMRVKMVVETEDSSRMTWIQGTVTAASMPDRGPWCGSPWGMLEVTWDEPEI 342 (578)
Q Consensus 287 ~~w~~GmRFkM~fE~EDssr~~w~~GTI~~v~~~dp~rWp~S~WR~L~V~WDe~~~ 342 (578)
..+..|+||-|.-+.-..+-- ..|||+||.-.. .=.+|+|-||++=.
T Consensus 1064 Q~F~LGDRVv~VqdsG~VPl~--~kGTVVGi~~~~-------~~~~ldVvFD~~F~ 1110 (1155)
T 3pie_A 1064 QRFHLGDRVMYIQDSGKVPLH--SKGTVVGYTSIG-------KNVSIQVLFDNEII 1110 (1155)
T ss_pred CcccCCCeEEEecCCCCCccc--cceEEEEEecCC-------CceEEEEEeccCcc
Confidence 459999999998775443322 479999998432 24689999999743
No 18
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=23.85 E-value=59 Score=27.44 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=23.5
Q ss_pred ccCcccccEEEEeeeccCCCceeeEEEEEEecC
Q 008088 286 RVFWTAGMRVKMVVETEDSSRMTWIQGTVTAAS 318 (578)
Q Consensus 286 ~~~w~~GmRFkM~fE~EDssr~~w~~GTI~~v~ 318 (578)
...|.+|+.+.-.|. +|. .||.++|.+|.
T Consensus 8 ~~~~kvGd~C~A~ys-~Dg---~wYrA~I~~i~ 36 (88)
T 1g5v_A 8 LQQWKVGDKCSAIWS-EDG---CIYPATIASID 36 (88)
T ss_dssp -CCCCSSCEEEEECT-TTC---CEEEEEEEEEE
T ss_pred cCCCCCCCEEEEEEC-CCC---CEEEEEEEEec
Confidence 357999999999994 342 59999999996
No 19
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=23.00 E-value=34 Score=29.00 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=15.9
Q ss_pred hhhccCCcCCCEEEEEEcC
Q 008088 194 FVNRKKLIAGDSVVFMRDS 212 (578)
Q Consensus 194 FV~~K~L~aGD~VvF~R~~ 212 (578)
....|...+||+|+|--..
T Consensus 18 Wa~~~~f~vGD~L~F~y~~ 36 (96)
T 2cbp_A 18 WPKGKRFRAGDILLFNYNP 36 (96)
T ss_dssp TTTTCCBCTTCEEEEECCT
T ss_pred hccCceEcCCCEEEEEecC
Confidence 3778999999999997654
No 20
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=28.50 E-value=18 Score=30.48 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=31.3
Q ss_pred hccCcccccEEEEeeeccCCCceeeEEEEEEecCCCCCCCCCCCCCCceeeccCc
Q 008088 285 MRVFWTAGMRVKMVVETEDSSRMTWIQGTVTAASMPDRGPWCGSPWGMLEVTWDE 339 (578)
Q Consensus 285 ~~~~w~~GmRFkM~fE~EDssr~~w~~GTI~~v~~~dp~rWp~S~WR~L~V~WDe 339 (578)
|-..|.+|+++--.|. | ..||-++|.+|... ....|.-++
T Consensus 3 ~~~~~kvGd~clAkws--D---g~wY~A~I~~v~~~----------~~y~V~F~D 42 (81)
T 2ldm_A 3 MSSEFQINEQVLASWS--D---SRFYPAKVTAVNKD----------GTYTVKFYD 42 (81)
Confidence 5678999999999998 3 25999999998621 146788887
No 21
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=21.59 E-value=80 Score=28.96 Aligned_cols=99 Identities=12% Similarity=0.057 Sum_probs=61.6
Q ss_pred CcCCCEEEEE-Ec-CCCcEEEEEEEccCCCCCCCCCCcccccCccCCHHHHHHHHHHHHcCCCEEEEEecCCCC------
Q 008088 200 LIAGDSVVFM-RD-SRGKMYIGLRRSVRYGNNGDSAGARWREQTGMKAEAVAVAVERAVLGLPFEVVYYPRAGW------ 271 (578)
Q Consensus 200 L~aGD~VvF~-R~-~~G~l~VgIRRa~r~~~~~~~~~~~~~~~~~~~~~~v~~A~~~aa~g~~F~V~Y~Pra~~------ 271 (578)
.+.||.|.+- .. .+|+.+-.-+ .... .+ .+.+- ..+-+|......|..++|.--|-...
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~--~~f~---------~G-~g~vi-pG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~ 69 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE--LSYL---------HG-HRNLI-PGLEEALEGREEGEAFQAHVPAEKAYGPHDPE 69 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE--EEEE---------TT-SSSSC-HHHHHHHTTCBTTCEEEEEECGGGTTCCCCGG
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE--EEEE---------EC-CCCcC-hHHHHHHcCCCCCCEEEEEECcHHHcCCCCcc
Confidence 5678888663 22 5776654433 1110 00 11232 24667777777888888887664433
Q ss_pred CceEEeHHHHHhhhccCcccccEEEEeeeccCCCceeeEEEEEEecC
Q 008088 272 ADFIVRAEVVDSAMRVFWTAGMRVKMVVETEDSSRMTWIQGTVTAAS 318 (578)
Q Consensus 272 ~EFvV~~~~y~~a~~~~w~~GmRFkM~fE~EDssr~~w~~GTI~~v~ 318 (578)
.-+.|+++.+... ..|.+||+|.+ .+++.. -+.|+|+.|.
T Consensus 70 lv~~v~~~~f~~~--~~~~~G~~~~~--~~~~G~---~~~~~V~~v~ 109 (158)
T 3cgm_A 70 GVQVVPLSAFPED--AEVVPGAQFYA--QDMEGN---PMPLTVVAVE 109 (158)
T ss_dssp GEEEEEGGGSCTT--SCCCTTCEEEE--EETTTE---EEEEEEEEEE
T ss_pred eEEEEEHHHCCCC--CCCccCCEEEE--ECCCCC---EEEEEEEEEC
Confidence 3467888888643 57999999985 454542 2689999987
Done!