BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008089
(578 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 100/244 (40%), Gaps = 29/244 (11%)
Query: 46 LYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDG 105
L V GG+G + V +D Q WS S R + ++ + +YV GG DG
Sbjct: 17 LLVVGGFGSQQSPIDVVEKYDPKTQEWS---FLPSITRKRRYVASVSLHDRIYVIGGYDG 73
Query: 106 MNPLRDLHILDTSSH---TWISPSVRGEGPEAREGHSAA-LVGKRLFIFGGC-GKSSNTN 160
+ L + LD ++ W S + R G + A +G +++ GG G +T+
Sbjct: 74 RSRLSSVECLDYTADEDGVWYSVAPM----NVRRGLAGATTLGDMIYVSGGFDGSRRHTS 129
Query: 161 DEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVH 220
E Y ++ + + G+ +AR+ I +GG DG + L+ V
Sbjct: 130 MERYDPNI----------DQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLN-ILNSVE 178
Query: 221 ILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYD-DLYMIDVDSGL 279
D T W + + + R+G +++V GGF + +L + Y I DS
Sbjct: 179 KYDPHTGHWTNVTP---MATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS-- 233
Query: 280 WTKV 283
WT V
Sbjct: 234 WTTV 237
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 78/197 (39%), Gaps = 23/197 (11%)
Query: 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGG 102
G +YV GG+ T+ ++Q WS + G T R+ +Y GG
Sbjct: 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQ-WS---MLGDMQTAREGAGLVVASGVIYCLGG 167
Query: 103 TDGMNPLRDLHILDTSSHTWISPSVRGEGPEA--REGHSAALVGKRLFIFGGC-GKSSNT 159
DG+N L + D + W + + P A R G AL+ +++ GG G + +
Sbjct: 168 YDGLNILNSVEKYDPHTGHWTNVT-----PMATKRSGAGVALLNDHIYVVGGFDGTAHLS 222
Query: 160 NDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDV 219
+ E Y N T W T+ P R + + ++ I G DG+ LS +
Sbjct: 223 SVEAY-------NIRTDSWTTVTSMTTP---RCYVGATVLRGRLYAIAGYDGNS-LLSSI 271
Query: 220 HILDTDTLTWKELNTSG 236
D +W+ + + G
Sbjct: 272 ECYDPIIDSWEVVTSMG 288
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 81/211 (38%), Gaps = 33/211 (15%)
Query: 85 RDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG 144
R TT+G+ +YV GG DG + D + W S+ G+ AREG +
Sbjct: 103 RGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQW---SMLGDMQTAREGAGLVVAS 159
Query: 145 KRLFIFGGCGKSSNTNDEVYYNDLYILNT------ETFVWKRATTSGNPPSARDSHTCSS 198
++ GG Y+ L ILN+ T W T + R +
Sbjct: 160 GVIYCLGG------------YDGLNILNSVEKYDPHTGHWTNVTPM---ATKRSGAGVAL 204
Query: 199 WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFG 258
+ I V+GG DG +LS V + T +W + + + +PR L+
Sbjct: 205 LNDHIYVVGGFDGTA-HLSSVEAYNIRTDSWTTVTS---MTTPRCYVGATVLRGRLYAIA 260
Query: 259 GFTDSQNLYDDLYMID--VDSGLWTKVITTG 287
G+ D +L + D +DS W V + G
Sbjct: 261 GY-DGNSLLSSIECYDPIIDS--WEVVTSMG 288
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 90/219 (41%), Gaps = 24/219 (10%)
Query: 46 LYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTD- 104
+Y+ GG ++ ++ V +W K PPTPRDS + +Y GG++
Sbjct: 58 VYILGG--SQLFPIKRMDCYNVVKDSWYS---KLGPPTPRDSLAACAAEGKIYTSGGSEV 112
Query: 105 GMNPLRDLHILDTSSHTW-ISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEV 163
G + L DT + +W PS+ + R H +++ GG ++ + +
Sbjct: 113 GNSALYLFECYDTRTESWHTKPSMLTQ----RCSHGMVEANGLIYVCGGSLGNNVSGRVL 168
Query: 164 YYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILD 223
++Y TET+ T AR +H K+KI +GG++G L +V D
Sbjct: 169 NSCEVYDPATETW-----TELCPMIEARKNHGLVFVKDKIFAVGGQNGLG-GLDNVEYYD 222
Query: 224 TDTLTWKELNTSGMVLSPRAGHST--VAFGKNLFVFGGF 260
WK ++ P G + A G ++V GF
Sbjct: 223 IKLNEWKMVSP-----MPWKGVTVKCAAVGSIVYVLAGF 256
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 106/310 (34%), Gaps = 79/310 (25%)
Query: 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGEN 96
C A K GR +Y GGY + + + + ++ N +W + PR + VG
Sbjct: 11 CRAPKVGRLIYTAGGYFRQS--LSYLEAYNPSNGSWLR---LADLQVPRSGLAGCVVGGL 65
Query: 97 LYVFGG-------------TDGMNPLR---------------------DLHILDT-SSHT 121
LY GG D NP+ D HI SH
Sbjct: 66 LYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHG 125
Query: 122 WI-SPSVRGEGPEAREGH------------SAALVGKRLFIFGGCGKSSNTND-EVYYND 167
I SV PE E H A++ + L+ GG ++ N E YY
Sbjct: 126 CIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYY-- 183
Query: 168 LYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTL 227
E W+ T + R N I GG DG D L+ V D +T
Sbjct: 184 -----PERNEWRMITPMN---TIRSGAGVCVLHNCIYAAGGYDGQD-QLNSVERYDVETE 234
Query: 228 TWKELNTSGMVLSPRAGHS-----TVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282
TW ++P H TV GK ++V GG+ D D + D DS W++
Sbjct: 235 TWT-------FVAPMRHHRSALGITVHQGK-IYVLGGY-DGHTFLDSVECYDPDSDTWSE 285
Query: 283 VITTGEGPSA 292
V G S
Sbjct: 286 VTRMTSGRSG 295
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 106/310 (34%), Gaps = 79/310 (25%)
Query: 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGEN 96
C A K GR +Y GGY + + + + ++ N +W + PR + VG
Sbjct: 12 CRAPKVGRLIYTAGGYFRQS--LSYLEAYNPSNGSWLR---LADLQVPRSGLAGCVVGGL 66
Query: 97 LYVFGG-------------TDGMNPLR---------------------DLHILDT-SSHT 121
LY GG D NP+ D HI SH
Sbjct: 67 LYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHG 126
Query: 122 WI-SPSVRGEGPEAREGH------------SAALVGKRLFIFGGCGKSSNTND-EVYYND 167
I SV PE E H A++ + L+ GG ++ N E YY
Sbjct: 127 CIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYY-- 184
Query: 168 LYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTL 227
E W+ T + R N I GG DG D L+ V D +T
Sbjct: 185 -----PERNEWRMITPMN---TIRSGAGVCVLHNCIYAAGGYDGQD-QLNSVERYDVETE 235
Query: 228 TWKELNTSGMVLSPRAGHS-----TVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282
TW ++P H TV GK ++V GG+ D D + D DS W++
Sbjct: 236 TWT-------FVAPMRHHRSALGITVHQGK-IYVLGGY-DGHTFLDSVECYDPDSDTWSE 286
Query: 283 VITTGEGPSA 292
V G S
Sbjct: 287 VTRMTSGRSG 296
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 96/261 (36%), Gaps = 39/261 (14%)
Query: 43 GRFLYVFGGYGKD---NCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYV 99
G LY GG N ++ + ++ WS P S PR+ + ++Y
Sbjct: 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPXTNQWS-PCAPXS--VPRNRIGVGVIDGHIYA 126
Query: 100 FGGTDGMNPLRDLHILDTSSHTW--ISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSS 157
GG+ G + + W ++P + R G A++ + L+ GG ++
Sbjct: 127 VGGSHGCIHHNSVERYEPERDEWHLVAPXL-----TRRIGVGVAVLNRLLYAVGGFDGTN 181
Query: 158 NTND-EVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYL 216
N E YY E W R T+ N + R N I GG DG D L
Sbjct: 182 RLNSAECYY-------PERNEW-RXITAXN--TIRSGAGVCVLHNCIYAAGGYDGQD-QL 230
Query: 217 SDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFG-----KNLFVFGGFTDSQNLYDDLY 271
+ V D +T TW ++P H A G ++V GG+ D D +
Sbjct: 231 NSVERYDVETETW-------TFVAPXK-HRRSALGITVHQGRIYVLGGY-DGHTFLDSVE 281
Query: 272 MIDVDSGLWTKVITTGEGPSA 292
D D+ W++V G S
Sbjct: 282 CYDPDTDTWSEVTRXTSGRSG 302
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 70/190 (36%), Gaps = 26/190 (13%)
Query: 83 TPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAAL 142
PR SH+ VG +Y GG L L + S+ TW+ + + R G + +
Sbjct: 14 VPRGSHA-PKVGRLIYTAGGYF-RQSLSYLEAYNPSNGTWLRLA---DLQVPRSGLAGCV 68
Query: 143 VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNK 202
VG L+ GG S + N + D Y N T W P +N+
Sbjct: 69 VGGLLYAVGGRNNSPDGNTDSSALDCY--NPXTNQWSPCAPXSVP------------RNR 114
Query: 203 IIVIGGEDGHDYYLSDVH--ILDTDTLTWK----ELNTSGMVLSPRAGHSTVAFGKNLFV 256
I V G DGH Y + H I ++ E + L+ R G + L+
Sbjct: 115 IGV-GVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPXLTRRIGVGVAVLNRLLYA 173
Query: 257 FGGFTDSQNL 266
GGF + L
Sbjct: 174 VGGFDGTNRL 183
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 74/192 (38%), Gaps = 22/192 (11%)
Query: 130 EGPEAREGHSAALVGKRLFIFGGCGKSSNTND----EVYYNDLYILNTETFVWKRATTSG 185
E P R+ + G +F GG N+ ++Y+ + + N E +S
Sbjct: 383 ECPINRKFGDVDVAGNDVFYMGG-SNPYRVNEILQLSIHYDKIDMKNIEV-------SSS 434
Query: 186 NPPSARDSHTCS--SWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRA 243
P AR HT + S N++++IGG LSD I D T W + + R
Sbjct: 435 EVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLS---HTRF 491
Query: 244 GHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLD 302
HS + N+ + GG T+ + + +V ++ V E AG D
Sbjct: 492 RHSACSLPDGNVLILGGVTEGPA----MLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD 547
Query: 303 PLKGGVLVFIGG 314
P+ ++ GG
Sbjct: 548 PVSKQGIILGGG 559
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 81 PPTPRDSHSCTTVGENLYVFGG----TDGMNP-LRDLHILDTSSHTWISPSVRGEGPEAR 135
P PRD + + NLYVFGG ++G+ D+H + +++W+ + P
Sbjct: 52 PGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWV--KLXSHAPXGX 109
Query: 136 EGHSAALVGKRLFIFGGC 153
GH + + ++ GG
Sbjct: 110 AGHVTFVHNGKAYVTGGV 127
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 13/136 (9%)
Query: 97 LYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKS 156
LY GG DG N L + W + R G ++ ++ GG
Sbjct: 171 LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT---IRSGAGVCVLHNCIYAAGG---- 223
Query: 157 SNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYL 216
+ D++ + Y + TET+ T R + + + +I V+GG DGH +L
Sbjct: 224 YDGQDQLNSVERYDVETETW-----TFVAPMKHRRSALGITVHQGRIYVLGGYDGHT-FL 277
Query: 217 SDVHILDTDTLTWKEL 232
V D DT TW E+
Sbjct: 278 DSVECYDPDTDTWSEV 293
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 70/190 (36%), Gaps = 26/190 (13%)
Query: 83 TPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAAL 142
PR SH+ VG +Y GG L L + S TW+ + + R G + +
Sbjct: 14 VPRGSHA-PKVGRLIYTAGGYF-RQSLSYLEAYNPSDGTWLRLA---DLQVPRSGLAGCV 68
Query: 143 VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNK 202
VG L+ GG S + N + D Y N T W P +N+
Sbjct: 69 VGGLLYAVGGRNNSPDGNTDSSALDCY--NPMTNQWSPCAPMSVP------------RNR 114
Query: 203 IIVIGGEDGHDYYLSDVH--ILDTDTLTWK----ELNTSGMVLSPRAGHSTVAFGKNLFV 256
I V G DGH Y + H I ++ E + +L+ R G + L+
Sbjct: 115 IGV-GVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYA 173
Query: 257 FGGFTDSQNL 266
GGF + L
Sbjct: 174 VGGFDGTNRL 183
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 23/186 (12%)
Query: 146 RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP--SARDSHTCSSWKNKI 203
++++ GG D+ + + L+ + W G PP SAR +KI
Sbjct: 58 QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW-----VGLPPLPSARCLFGLGEVDDKI 112
Query: 204 IVIGGEDGH-DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTD 262
V+ G+D + L V D W E+ + + GH+ ++ ++ GG TD
Sbjct: 113 YVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVY---GHNVISHNGMIYCLGGKTD 169
Query: 263 SQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK----- 317
+ + +++ + G W K + + P + F VA + G +V GG +
Sbjct: 170 DKKCTNRVFIYNPKKGDW-KDLAPMKTPRSMFGVA------IHKGKIVIAGGVTEDGLSA 222
Query: 318 SLEALD 323
S+EA D
Sbjct: 223 SVEAFD 228
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 47/126 (37%), Gaps = 12/126 (9%)
Query: 29 PGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSH 88
P K +GH N I +Y GG D TN+V +++ W TPR
Sbjct: 146 PIKVYGH--NVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD---LAPMKTPRSMF 200
Query: 89 SCTTVGENLYVFGGT--DGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKR 146
+ + GG DG++ + D ++ W V E P+ R S +
Sbjct: 201 GVAIHKGKIVIAGGVTEDGLSA--SVEAFDLKTNKW---EVMTEFPQERSSISLVSLAGS 255
Query: 147 LFIFGG 152
L+ GG
Sbjct: 256 LYAIGG 261
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 13/136 (9%)
Query: 97 LYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKS 156
LY GG DG N L + W + R G ++ ++ GG
Sbjct: 172 LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT---IRSGAGVCVLHNCIYAAGG---- 224
Query: 157 SNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYL 216
+ D++ + Y + TET+ T R + + + +I V+GG DGH +L
Sbjct: 225 YDGQDQLNSVERYDVETETW-----TFVAPMKHRRSALGITVHQGRIYVLGGYDGHT-FL 278
Query: 217 SDVHILDTDTLTWKEL 232
V D DT TW E+
Sbjct: 279 DSVECYDPDTDTWSEV 294
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 69/190 (36%), Gaps = 25/190 (13%)
Query: 83 TPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAAL 142
PR SH VG +Y GG L L + S TW+ + + R G + +
Sbjct: 14 VPRGSHMAPKVGRLIYTAGGYF-RQSLSYLEAYNPSDGTWLRLA---DLQVPRSGLAGCV 69
Query: 143 VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNK 202
VG L+ GG S + N + D Y N T W P +N+
Sbjct: 70 VGGLLYAVGGRNNSPDGNTDSSALDCY--NPMTNQWSPCAPMSVP------------RNR 115
Query: 203 IIVIGGEDGHDYYLSDVH--ILDTDTLTWK----ELNTSGMVLSPRAGHSTVAFGKNLFV 256
I V G DGH Y + H I ++ E + +L+ R G + L+
Sbjct: 116 IGV-GVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYA 174
Query: 257 FGGFTDSQNL 266
GGF + L
Sbjct: 175 VGGFDGTNRL 184
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 5/122 (4%)
Query: 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTD 104
LY GGY D + + N T ++ T R + LY GG D
Sbjct: 157 LLYAVGGY--DVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHD 214
Query: 105 GMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVY 164
G + + + D +++ W + + R V L++ GG S N Y
Sbjct: 215 GPLVRKSVEVYDPTTNAWRQVA---DMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEY 271
Query: 165 YN 166
YN
Sbjct: 272 YN 273
>pdb|4GKB|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans,
Unliganded Structure
pdb|4GKB|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans,
Unliganded Structure
pdb|4GKB|C Chain C, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans,
Unliganded Structure
pdb|4GKB|D Chain D, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans,
Unliganded Structure
pdb|4GLO|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nad
pdb|4GLO|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nad
pdb|4GLO|C Chain C, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nad
pdb|4GLO|D Chain D, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nad
pdb|4GVX|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nadp And L-Fucose
pdb|4GVX|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nadp And L-Fucose
pdb|4GVX|C Chain C, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nadp And L-Fucose
pdb|4GVX|D Chain D, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nadp And L-Fucose
Length = 258
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Query: 233 NTSGMVLSPRAGHSTVAFGKNLFVFGGFT 261
+T+ +LSPRA H+T G+ LFV GG+T
Sbjct: 226 DTAVFLLSPRASHTT---GEWLFVDGGYT 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,076,758
Number of Sequences: 62578
Number of extensions: 858170
Number of successful extensions: 1258
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1209
Number of HSP's gapped (non-prelim): 37
length of query: 578
length of database: 14,973,337
effective HSP length: 104
effective length of query: 474
effective length of database: 8,465,225
effective search space: 4012516650
effective search space used: 4012516650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)