Query 008089
Match_columns 578
No_of_seqs 337 out of 2543
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 19:19:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4693 Uncharacterized conser 100.0 7.9E-47 1.7E-51 362.1 22.7 339 20-371 4-376 (392)
2 PLN02153 epithiospecifier prot 100.0 3.3E-43 7.1E-48 369.8 38.4 301 26-330 17-338 (341)
3 PLN02193 nitrile-specifier pro 100.0 5E-43 1.1E-47 382.9 39.1 297 25-331 159-468 (470)
4 KOG0379 Kelch repeat-containin 100.0 9.4E-40 2E-44 356.8 30.9 390 23-431 52-449 (482)
5 KOG4152 Host cell transcriptio 100.0 2.4E-40 5.2E-45 340.0 20.7 301 24-334 25-366 (830)
6 PLN02193 nitrile-specifier pro 100.0 3.7E-37 8.1E-42 336.6 36.8 289 37-341 115-420 (470)
7 KOG4693 Uncharacterized conser 100.0 1.2E-37 2.6E-42 299.0 20.2 251 1-262 54-313 (392)
8 KOG4441 Proteins containing BT 100.0 8.8E-36 1.9E-40 330.7 30.1 283 28-340 272-555 (571)
9 PLN02153 epithiospecifier prot 100.0 1.1E-34 2.5E-39 305.0 33.9 262 68-339 5-292 (341)
10 TIGR03547 muta_rot_YjhT mutatr 100.0 4.5E-34 9.7E-39 301.0 32.4 278 27-329 3-344 (346)
11 PHA02713 hypothetical protein; 100.0 8.5E-35 1.9E-39 323.6 27.9 242 27-286 289-543 (557)
12 TIGR03548 mutarot_permut cycli 100.0 1.1E-33 2.4E-38 295.3 32.5 272 30-323 2-320 (323)
13 PHA02713 hypothetical protein; 100.0 8.1E-34 1.8E-38 315.7 30.2 261 45-336 259-538 (557)
14 KOG4441 Proteins containing BT 100.0 5.8E-34 1.3E-38 316.2 27.9 238 27-285 318-555 (571)
15 KOG1230 Protein containing rep 100.0 1.6E-34 3.4E-39 291.9 20.9 258 26-287 61-351 (521)
16 PRK14131 N-acetylneuraminic ac 100.0 8.8E-33 1.9E-37 294.4 32.3 280 27-331 24-368 (376)
17 KOG0379 Kelch repeat-containin 100.0 2.2E-33 4.8E-38 306.7 27.0 255 77-340 53-310 (482)
18 PHA03098 kelch-like protein; P 100.0 1.9E-32 4.1E-37 305.0 29.6 234 32-285 285-520 (534)
19 PHA03098 kelch-like protein; P 100.0 6.5E-31 1.4E-35 292.6 30.1 266 45-340 252-520 (534)
20 KOG1230 Protein containing rep 100.0 8.1E-32 1.7E-36 272.4 20.1 254 80-338 62-347 (521)
21 TIGR03548 mutarot_permut cycli 100.0 2E-30 4.3E-35 270.8 28.1 228 26-269 57-321 (323)
22 TIGR03547 muta_rot_YjhT mutatr 100.0 1.9E-29 4E-34 265.9 28.0 230 27-274 48-344 (346)
23 PRK14131 N-acetylneuraminic ac 100.0 3E-29 6.6E-34 267.2 28.2 235 30-282 73-374 (376)
24 PHA02790 Kelch-like protein; P 100.0 3.9E-29 8.4E-34 274.2 28.8 207 43-283 271-477 (480)
25 KOG4152 Host cell transcriptio 100.0 5.2E-28 1.1E-32 249.4 18.1 258 69-338 16-309 (830)
26 PHA02790 Kelch-like protein; P 100.0 2E-26 4.3E-31 252.8 29.0 211 90-338 267-477 (480)
27 KOG2437 Muskelin [Signal trans 99.8 2.6E-20 5.6E-25 192.7 2.7 314 10-331 235-612 (723)
28 COG3055 Uncharacterized protei 99.8 1.2E-16 2.6E-21 161.1 22.2 280 27-329 32-372 (381)
29 COG3055 Uncharacterized protei 99.6 2.1E-14 4.5E-19 145.0 20.8 232 31-278 82-376 (381)
30 KOG2437 Muskelin [Signal trans 99.6 9E-16 2E-20 159.3 6.9 271 69-342 238-545 (723)
31 PF13964 Kelch_6: Kelch motif 99.0 1.5E-09 3.3E-14 81.1 6.5 49 84-135 1-50 (50)
32 PLN02772 guanylate kinase 98.9 7E-09 1.5E-13 109.0 11.3 89 80-176 20-110 (398)
33 PLN02772 guanylate kinase 98.9 1.1E-08 2.3E-13 107.6 11.7 91 25-119 18-109 (398)
34 PF13964 Kelch_6: Kelch motif 98.9 4.7E-09 1E-13 78.5 6.4 50 190-242 1-50 (50)
35 PF13415 Kelch_3: Galactose ox 98.8 1.2E-08 2.7E-13 75.9 6.0 47 94-143 1-49 (49)
36 PF13415 Kelch_3: Galactose ox 98.7 2.8E-08 6.1E-13 73.9 6.3 48 43-93 1-49 (49)
37 PF03089 RAG2: Recombination a 98.6 3.3E-06 7.2E-11 83.6 19.7 163 97-263 41-231 (337)
38 PF07646 Kelch_2: Kelch motif; 98.6 7.6E-08 1.6E-12 71.6 6.5 44 84-127 1-47 (49)
39 PF07646 Kelch_2: Kelch motif; 98.6 6.2E-08 1.3E-12 72.1 6.0 46 241-286 1-48 (49)
40 PF01344 Kelch_1: Kelch motif; 98.6 7.4E-08 1.6E-12 70.8 5.5 46 241-286 1-46 (47)
41 PF13418 Kelch_4: Galactose ox 98.6 4.7E-08 1E-12 72.6 4.4 45 241-285 1-46 (49)
42 PF13418 Kelch_4: Galactose ox 98.6 7.1E-08 1.5E-12 71.7 4.2 45 190-234 1-46 (49)
43 PF03089 RAG2: Recombination a 98.6 1.1E-05 2.4E-10 79.9 20.6 179 131-319 19-232 (337)
44 PF01344 Kelch_1: Kelch motif; 98.5 1.3E-07 2.9E-12 69.4 4.8 45 190-234 1-45 (47)
45 PF13854 Kelch_5: Kelch motif 98.5 3.5E-07 7.6E-12 65.7 5.3 40 81-120 1-42 (42)
46 PF13854 Kelch_5: Kelch motif 98.4 4.5E-07 9.8E-12 65.2 5.6 41 238-278 1-42 (42)
47 smart00612 Kelch Kelch domain. 98.3 1.1E-06 2.3E-11 64.0 4.9 47 96-145 1-47 (47)
48 smart00612 Kelch Kelch domain. 98.1 4.7E-06 1E-10 60.5 4.7 47 202-252 1-47 (47)
49 PF07250 Glyoxal_oxid_N: Glyox 97.9 0.00053 1.1E-08 68.4 17.0 153 111-289 47-211 (243)
50 TIGR01640 F_box_assoc_1 F-box 97.9 0.0032 6.9E-08 62.4 22.4 197 60-278 14-230 (230)
51 PF07250 Glyoxal_oxid_N: Glyox 97.6 0.0023 4.9E-08 63.9 15.4 147 61-234 47-207 (243)
52 TIGR01640 F_box_assoc_1 F-box 97.6 0.015 3.2E-07 57.6 21.2 163 110-287 14-188 (230)
53 PF13360 PQQ_2: PQQ-like domai 97.2 0.21 4.6E-06 48.9 24.2 187 42-281 35-237 (238)
54 PRK11138 outer membrane biogen 97.1 0.33 7.2E-06 52.1 26.3 194 43-282 69-282 (394)
55 PF13360 PQQ_2: PQQ-like domai 97.0 0.4 8.6E-06 46.9 26.4 179 60-282 3-199 (238)
56 PRK11138 outer membrane biogen 96.9 0.54 1.2E-05 50.5 26.3 186 43-282 120-320 (394)
57 TIGR03300 assembly_YfgL outer 96.4 1.6 3.5E-05 46.4 25.7 188 43-282 65-267 (377)
58 PF07893 DUF1668: Protein of u 96.0 1.3 2.9E-05 46.7 21.8 128 89-235 70-217 (342)
59 PF07893 DUF1668: Protein of u 95.4 3.1 6.8E-05 43.9 21.9 122 36-182 70-215 (342)
60 PRK05137 tolB translocation pr 95.0 6.6 0.00014 42.7 23.9 195 60-284 226-420 (435)
61 KOG2055 WD40 repeat protein [G 94.5 0.5 1.1E-05 50.4 12.4 152 95-279 225-377 (514)
62 KOG2055 WD40 repeat protein [G 94.5 1.5 3.2E-05 46.9 15.8 161 34-228 215-377 (514)
63 cd00094 HX Hemopexin-like repe 94.1 3.7 8.1E-05 39.5 16.9 147 44-228 17-178 (194)
64 cd00094 HX Hemopexin-like repe 93.8 4.4 9.5E-05 39.0 16.7 152 90-279 12-178 (194)
65 PF12768 Rax2: Cortical protei 93.6 2.6 5.7E-05 43.2 15.3 113 164-285 14-130 (281)
66 TIGR03300 assembly_YfgL outer 93.2 13 0.00028 39.4 25.4 171 60-279 155-341 (377)
67 PF05096 Glu_cyclase_2: Glutam 93.2 6 0.00013 40.0 16.8 154 43-232 55-210 (264)
68 PRK04792 tolB translocation pr 93.0 17 0.00036 39.9 22.8 189 60-283 242-431 (448)
69 TIGR03866 PQQ_ABC_repeats PQQ- 92.8 11 0.00024 37.5 26.4 183 46-280 3-191 (300)
70 PF12768 Rax2: Cortical protei 92.6 1.6 3.6E-05 44.7 12.3 94 215-315 14-110 (281)
71 TIGR02800 propeller_TolB tol-p 92.5 17 0.00037 38.8 23.5 148 110-285 214-363 (417)
72 TIGR02800 propeller_TolB tol-p 92.5 17 0.00037 38.8 21.7 147 60-234 214-363 (417)
73 PF08450 SGL: SMP-30/Gluconola 92.3 13 0.00028 36.8 23.7 202 43-285 11-222 (246)
74 cd00216 PQQ_DH Dehydrogenases 91.8 24 0.00053 39.1 24.3 126 89-233 56-193 (488)
75 PRK04792 tolB translocation pr 91.8 23 0.0005 38.8 22.8 149 110-285 242-391 (448)
76 cd00200 WD40 WD40 domain, foun 91.4 14 0.0003 35.4 22.8 193 37-280 14-211 (289)
77 PRK00178 tolB translocation pr 91.2 25 0.00054 38.0 22.8 199 41-278 208-408 (430)
78 cd00216 PQQ_DH Dehydrogenases 91.2 28 0.0006 38.6 24.7 122 43-181 61-192 (488)
79 PRK05137 tolB translocation pr 91.1 26 0.00056 38.1 26.4 147 110-284 226-374 (435)
80 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.3 35 0.00077 38.3 21.8 124 89-233 64-199 (527)
81 PF09910 DUF2139: Uncharacteri 90.2 24 0.00052 36.3 19.5 159 27-206 28-219 (339)
82 PF08268 FBA_3: F-box associat 90.1 6.7 0.00015 34.9 12.3 85 199-285 4-89 (129)
83 TIGR02658 TTQ_MADH_Hv methylam 90.1 29 0.00062 36.9 23.5 233 28-279 43-333 (352)
84 PF08450 SGL: SMP-30/Gluconola 90.1 21 0.00045 35.3 18.0 180 94-312 11-200 (246)
85 PF10282 Lactonase: Lactonase, 89.9 28 0.00061 36.6 21.6 235 48-313 3-263 (345)
86 PRK04043 tolB translocation pr 89.1 37 0.00081 36.9 19.7 150 110-286 213-367 (419)
87 PF05096 Glu_cyclase_2: Glutam 88.6 30 0.00065 35.1 18.5 200 89-329 49-259 (264)
88 PRK04043 tolB translocation pr 88.4 42 0.00091 36.5 23.2 190 60-283 213-407 (419)
89 PF12217 End_beta_propel: Cata 88.1 31 0.00068 34.7 18.9 260 43-316 25-334 (367)
90 TIGR03075 PQQ_enz_alc_DH PQQ-d 87.9 52 0.0011 37.0 24.7 210 43-279 69-336 (527)
91 TIGR03866 PQQ_ABC_repeats PQQ- 87.6 31 0.00068 34.1 27.6 153 37-229 36-191 (300)
92 PRK04922 tolB translocation pr 87.5 47 0.001 36.1 23.4 184 60-279 228-414 (433)
93 PRK00178 tolB translocation pr 87.4 47 0.001 35.9 24.5 146 110-285 223-372 (430)
94 COG1520 FOG: WD40-like repeat 86.7 46 0.001 35.2 19.0 150 43-231 68-225 (370)
95 cd00200 WD40 WD40 domain, foun 86.5 31 0.00066 33.0 24.8 183 46-279 65-252 (289)
96 PRK04922 tolB translocation pr 84.9 63 0.0014 35.1 24.1 147 110-285 228-377 (433)
97 PRK13684 Ycf48-like protein; P 84.8 55 0.0012 34.3 23.9 223 38-315 51-279 (334)
98 PTZ00421 coronin; Provisional 84.6 73 0.0016 35.5 20.7 154 95-283 138-297 (493)
99 PF02897 Peptidase_S9_N: Proly 84.4 63 0.0014 34.7 19.6 194 59-284 201-412 (414)
100 PRK03629 tolB translocation pr 84.3 67 0.0015 34.9 22.5 190 60-283 223-413 (429)
101 PRK03629 tolB translocation pr 82.2 80 0.0017 34.3 24.9 149 110-285 223-372 (429)
102 PF10282 Lactonase: Lactonase, 81.8 42 0.00091 35.3 15.0 171 32-234 144-333 (345)
103 PF14870 PSII_BNR: Photosynthe 81.4 71 0.0015 33.2 22.2 227 38-316 22-253 (302)
104 PF08268 FBA_3: F-box associat 81.4 38 0.00083 30.0 12.5 86 92-183 3-89 (129)
105 PF09910 DUF2139: Uncharacteri 81.2 71 0.0015 33.0 19.1 147 88-257 40-219 (339)
106 PF02897 Peptidase_S9_N: Proly 80.8 84 0.0018 33.6 21.5 189 60-276 150-357 (414)
107 PF02191 OLF: Olfactomedin-lik 80.7 67 0.0015 32.4 17.0 189 94-312 30-236 (250)
108 PRK02889 tolB translocation pr 79.7 96 0.0021 33.6 22.4 148 110-285 220-369 (427)
109 PLN00181 protein SPA1-RELATED; 79.5 1.4E+02 0.003 35.3 23.1 139 95-277 545-691 (793)
110 TIGR03074 PQQ_membr_DH membran 77.9 1.5E+02 0.0033 34.9 23.2 31 88-124 188-220 (764)
111 PF03178 CPSF_A: CPSF A subuni 77.7 78 0.0017 32.7 15.3 122 110-259 62-190 (321)
112 PLN00033 photosystem II stabil 76.5 1.2E+02 0.0025 32.9 26.9 114 41-181 98-214 (398)
113 PF02191 OLF: Olfactomedin-lik 76.2 91 0.002 31.4 17.5 187 43-258 30-237 (250)
114 KOG0310 Conserved WD40 repeat- 75.4 1.3E+02 0.0028 32.9 19.4 175 92-318 120-302 (487)
115 KOG0310 Conserved WD40 repeat- 74.9 43 0.00093 36.4 12.2 147 92-278 77-227 (487)
116 PRK02889 tolB translocation pr 74.0 1.4E+02 0.003 32.4 22.3 184 60-277 220-404 (427)
117 PRK11028 6-phosphogluconolacto 71.1 1.3E+02 0.0028 30.9 23.9 67 45-125 3-73 (330)
118 COG3823 Glutamine cyclotransfe 70.7 1.1E+02 0.0024 30.1 12.8 153 45-234 57-216 (262)
119 PLN02919 haloacid dehalogenase 67.6 3E+02 0.0066 33.8 26.8 158 94-279 694-891 (1057)
120 PF02239 Cytochrom_D1: Cytochr 67.4 1E+02 0.0023 32.8 13.5 194 59-291 15-217 (369)
121 PRK13684 Ycf48-like protein; P 66.8 1.7E+02 0.0037 30.6 23.8 199 69-315 118-322 (334)
122 PF02239 Cytochrom_D1: Cytochr 63.9 2.1E+02 0.0045 30.6 15.3 259 34-335 80-351 (369)
123 PF14583 Pectate_lyase22: Olig 61.3 2.4E+02 0.0051 30.4 14.9 244 40-316 44-303 (386)
124 smart00284 OLF Olfactomedin-li 60.6 2E+02 0.0042 29.2 18.7 194 94-312 34-241 (255)
125 PRK01742 tolB translocation pr 59.9 2.5E+02 0.0055 30.3 20.9 163 60-260 228-391 (429)
126 KOG2048 WD40 repeat protein [G 59.6 3.2E+02 0.0069 31.3 19.0 115 196-334 389-508 (691)
127 PLN00033 photosystem II stabil 59.2 2.6E+02 0.0057 30.2 25.0 217 43-313 146-388 (398)
128 PTZ00421 coronin; Provisional 55.2 3.4E+02 0.0073 30.3 17.1 62 46-121 140-201 (493)
129 KOG2321 WD40 repeat protein [G 54.6 99 0.0021 34.6 10.3 77 30-121 132-208 (703)
130 KOG2321 WD40 repeat protein [G 53.7 89 0.0019 35.0 9.8 75 132-227 131-207 (703)
131 PLN00181 protein SPA1-RELATED; 53.6 4.4E+02 0.0095 31.1 24.6 174 61-278 556-740 (793)
132 PF06433 Me-amine-dh_H: Methyl 53.4 1.2E+02 0.0026 32.0 10.5 73 199-282 248-326 (342)
133 PF12217 End_beta_propel: Cata 52.2 2.7E+02 0.0059 28.3 14.0 215 34-261 77-334 (367)
134 PRK11028 6-phosphogluconolacto 52.1 2.8E+02 0.0061 28.4 23.9 231 38-313 41-292 (330)
135 COG4257 Vgb Streptogramin lyas 52.1 2.9E+02 0.0062 28.5 18.0 186 61-285 125-314 (353)
136 TIGR03074 PQQ_membr_DH membran 51.2 4.8E+02 0.01 30.9 23.6 61 213-279 410-480 (764)
137 COG2706 3-carboxymuconate cycl 50.2 3.3E+02 0.0072 28.7 18.7 185 26-235 135-333 (346)
138 PF03178 CPSF_A: CPSF A subuni 49.5 3.1E+02 0.0067 28.2 15.0 138 44-208 42-190 (321)
139 PF15525 DUF4652: Domain of un 46.7 1.5E+02 0.0033 28.5 9.0 77 208-286 79-158 (200)
140 KOG0286 G-protein beta subunit 44.8 3.7E+02 0.0079 27.9 11.9 143 140-323 72-215 (343)
141 PRK01029 tolB translocation pr 43.9 4.6E+02 0.0099 28.5 19.8 75 200-285 337-412 (428)
142 COG0823 TolB Periplasmic compo 43.5 4.6E+02 0.0099 28.6 13.6 108 165-287 261-370 (425)
143 KOG0649 WD40 repeat protein [G 42.6 3.7E+02 0.0081 27.1 19.6 109 27-152 111-225 (325)
144 KOG4378 Nuclear protein COP1 [ 41.7 4.9E+02 0.011 28.9 12.9 91 167-278 188-282 (673)
145 PF13088 BNR_2: BNR repeat-lik 41.5 3.6E+02 0.0079 26.6 20.0 229 69-311 29-275 (275)
146 PRK01742 tolB translocation pr 40.4 5E+02 0.011 28.0 21.8 141 110-284 228-369 (429)
147 COG4946 Uncharacterized protei 39.4 5.7E+02 0.012 28.3 20.0 186 59-285 286-486 (668)
148 KOG0296 Angio-associated migra 39.0 5.1E+02 0.011 27.6 15.1 147 40-228 72-223 (399)
149 PLN03215 ascorbic acid mannose 38.9 5.2E+02 0.011 27.7 15.5 105 69-185 189-305 (373)
150 PLN03215 ascorbic acid mannose 38.7 4.8E+02 0.01 28.0 12.4 100 175-287 189-305 (373)
151 KOG0266 WD40 repeat-containing 35.5 6.2E+02 0.014 27.6 21.4 93 61-178 226-322 (456)
152 KOG0281 Beta-TrCP (transducin 35.1 4.4E+02 0.0096 27.9 10.9 88 168-277 342-429 (499)
153 PF06433 Me-amine-dh_H: Methyl 35.1 5.1E+02 0.011 27.4 11.7 91 26-124 31-132 (342)
154 KOG0772 Uncharacterized conser 34.9 6.9E+02 0.015 27.9 16.8 124 188-334 314-448 (641)
155 KOG0316 Conserved WD40 repeat- 34.6 4.7E+02 0.01 26.3 10.5 91 166-280 81-177 (307)
156 cd05694 S1_Rrp5_repeat_hs2_sc2 34.5 40 0.00087 27.0 2.8 28 398-427 7-34 (74)
157 PF14870 PSII_BNR: Photosynthe 34.1 5.5E+02 0.012 26.6 20.1 176 68-285 4-183 (302)
158 KOG0316 Conserved WD40 repeat- 31.7 5.5E+02 0.012 25.9 15.2 153 38-227 107-259 (307)
159 PRK10115 protease 2; Provision 31.2 9E+02 0.019 28.2 25.9 166 94-284 182-354 (686)
160 KOG0318 WD40 repeat stress pro 30.8 5.1E+02 0.011 29.0 11.0 77 31-121 442-520 (603)
161 PF05182 Fip1: Fip1 motif; In 30.8 16 0.00035 26.5 -0.0 14 401-414 18-31 (45)
162 PRK10115 protease 2; Provision 29.2 9.6E+02 0.021 27.9 22.6 218 35-286 175-404 (686)
163 PLN02919 haloacid dehalogenase 29.1 1.2E+03 0.025 28.9 31.7 210 43-287 579-844 (1057)
164 KOG0649 WD40 repeat protein [G 28.2 6.4E+02 0.014 25.5 15.5 126 131-285 112-244 (325)
165 KOG0646 WD40 repeat protein [G 26.8 8.8E+02 0.019 26.6 15.8 203 35-279 85-310 (476)
166 KOG1645 RING-finger-containing 26.8 5.6E+02 0.012 27.7 10.2 28 139-176 240-268 (463)
167 TIGR02658 TTQ_MADH_Hv methylam 26.5 8E+02 0.017 26.1 27.7 116 45-180 14-142 (352)
168 KOG1332 Vesicle coat complex C 26.4 4.5E+02 0.0097 26.6 8.9 121 27-182 161-295 (299)
169 TIGR01624 LRP1_Cterm LRP1 C-te 26.1 75 0.0016 23.4 2.6 23 408-430 27-49 (50)
170 KOG1036 Mitotic spindle checkp 25.5 7.8E+02 0.017 25.6 16.5 130 61-228 36-166 (323)
171 PF13570 PQQ_3: PQQ-like domai 24.6 1.5E+02 0.0033 20.1 4.1 26 88-119 15-40 (40)
172 COG0823 TolB Periplasmic compo 22.6 1E+03 0.022 25.9 15.4 106 110-234 262-368 (425)
173 PF13088 BNR_2: BNR repeat-lik 22.3 7.5E+02 0.016 24.3 14.6 215 29-256 44-275 (275)
174 PF15525 DUF4652: Domain of un 22.3 7.2E+02 0.016 24.1 11.1 71 162-234 84-157 (200)
175 COG4880 Secreted protein conta 21.3 1.1E+03 0.024 25.9 13.4 197 49-283 395-597 (603)
176 KOG3881 Uncharacterized conser 20.8 9.3E+02 0.02 25.9 10.5 145 146-317 162-312 (412)
177 KOG0279 G protein beta subunit 20.4 9.5E+02 0.021 24.8 11.9 55 89-153 198-252 (315)
178 KOG0281 Beta-TrCP (transducin 20.3 8E+02 0.017 26.1 9.7 105 197-331 326-430 (499)
179 KOG0285 Pleiotropic regulator 20.1 8.6E+02 0.019 26.0 9.9 197 200-424 162-377 (460)
No 1
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=7.9e-47 Score=362.14 Aligned_cols=339 Identities=27% Similarity=0.515 Sum_probs=280.9
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCEEEEEcCCCCCC----CCcccEEEEEcCCCcEEEeee----------cCCCCCCC
Q 008089 20 VSSEISSSGPGKRWGHTCNAIKGGRFLYVFGGYGKDN----CQTNQVHVFDTVNQTWSQPVI----------KGSPPTPR 85 (578)
Q Consensus 20 ~~~~~~g~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~~----~~~~~v~~yD~~t~~W~~l~~----------~g~~P~~R 85 (578)
|..++. ++| +|++|+++++ |..||.|||+.... ...-|++++|..+..|.+++. .+..|..|
T Consensus 4 WTVHLe-GGP-rRVNHAavaV--G~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqR 79 (392)
T KOG4693|consen 4 WTVHLE-GGP-RRVNHAAVAV--GSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQR 79 (392)
T ss_pred EEEEec-CCc-ccccceeeee--cceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhh
Confidence 334443 345 8999999999 77999999984322 245689999999999998763 11246679
Q ss_pred cceeEEEECCEEEEEcccCC-CCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCcee
Q 008089 86 DSHSCTTVGENLYVFGGTDG-MNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVY 164 (578)
Q Consensus 86 ~~hs~~~~~~kIYv~GG~~~-~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~ 164 (578)
++|+.+.+++++||+||+++ .+.+|-+++||+.++.|.++++.|-+|.+|.+|++|++++.+|||||+.+. ...+
T Consensus 80 YGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~----a~~F 155 (392)
T KOG4693|consen 80 YGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEED----AQRF 155 (392)
T ss_pred cCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHH----HHhh
Confidence 99999999999999999987 678899999999999999999999999999999999999999999998643 5578
Q ss_pred eceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCC--------CCcccCceEEEECCCCceEEecCCC
Q 008089 165 YNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDG--------HDYYLSDVHILDTDTLTWKELNTSG 236 (578)
Q Consensus 165 ~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~--------~~~~~~di~~yD~~t~~W~~v~~~g 236 (578)
.++++.+|..|.+|+.+.+.+.+|..|.+|+++++++.+|||||... .+.+.+.|..+|+.++.|......+
T Consensus 156 S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~ 235 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENT 235 (392)
T ss_pred hccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999753 3457788999999999999998888
Q ss_pred CCCCCCceeEEEEeCCEEEEEcCccCCCC-ccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccc
Q 008089 237 MVLSPRAGHSTVAFGKNLFVFGGFTDSQN-LYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGC 315 (578)
Q Consensus 237 ~~p~~R~~hs~v~~~~~iyV~GG~~~~~~-~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~ 315 (578)
..|..|..|++.+++++||+|||++...+ -++|+|+||+.+..|..|...+..|++|..+++++. ++++|+|||.
T Consensus 236 ~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~----g~kv~LFGGT 311 (392)
T KOG4693|consen 236 MKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVS----GGKVYLFGGT 311 (392)
T ss_pred cCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEE----CCEEEEecCC
Confidence 89999999999999999999999987544 489999999999999999999999999999887654 8999999998
Q ss_pred cCCC------CccCcEEEEecccccceecccchhhHhhHh----hhhccccCCccccceEEecccC
Q 008089 316 NKSL------EALDDMYYLYTGLVNERKLEKLSLRKQLKL----KCQEQNFTPVHDRALVRIDTIS 371 (578)
Q Consensus 316 ~~~~------~~~~d~~~l~~~~~~~~~l~~ls~~k~lk~----~~~~~~~~p~~~~~~~~~~~~~ 371 (578)
.... ...+- ..-..++.+-+|+..|++.+.||. ..+.+.+.....+.-+|++...
T Consensus 312 sP~~~~~~Spt~~~G-~~~~~~LiD~SDLHvLDF~PsLKTLa~~~Vl~~~ldqs~Lp~diR~el~~ 376 (392)
T KOG4693|consen 312 SPLPCHPLSPTNYNG-MISPSGLIDLSDLHVLDFAPSLKTLAMQSVLMFELDQSELPADIRFELYC 376 (392)
T ss_pred CCCCCCCCCccccCC-CCCcccccccccceeeecChhHHHHHHHHHHHHhhhhhhcchhhhhhhee
Confidence 6521 00000 001124556788999999999883 3445555555556666666543
No 2
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=3.3e-43 Score=369.85 Aligned_cols=301 Identities=27% Similarity=0.427 Sum_probs=242.2
Q ss_pred CCCCCCCcceEEEEEcCCCEEEEEcCCCCC-CCCcccEEEEEcCCCcEEEeeecCCCCCC-CcceeEEEECCEEEEEccc
Q 008089 26 SSGPGKRWGHTCNAIKGGRFLYVFGGYGKD-NCQTNQVHVFDTVNQTWSQPVIKGSPPTP-RDSHSCTTVGENLYVFGGT 103 (578)
Q Consensus 26 g~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~-~~~~~~v~~yD~~t~~W~~l~~~g~~P~~-R~~hs~~~~~~kIYv~GG~ 103 (578)
|..|.+|.+|+++++ +++||||||.... ....+++|+||+.+++|..+...+..|.. +.+|++++++++||||||.
T Consensus 17 ~~~P~pR~~h~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~ 94 (341)
T PLN02153 17 GKGPGPRCSHGIAVV--GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGR 94 (341)
T ss_pred CCCCCCCCcceEEEE--CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCC
Confidence 357999999999988 5689999998543 23457899999999999987644444443 4589999999999999999
Q ss_pred CCCCCCCcEEEEECCCCeEEecccC--CCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEe
Q 008089 104 DGMNPLRDLHILDTSSHTWISPSVR--GEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRA 181 (578)
Q Consensus 104 ~~~~~~~~v~~yD~~t~~W~~l~~~--g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~ 181 (578)
++...++++++||+.+++|+.++.. ...|.+|.+|++++++++||||||+...........++++++||+.+++|..+
T Consensus 95 ~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l 174 (341)
T PLN02153 95 DEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQL 174 (341)
T ss_pred CCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeC
Confidence 8777789999999999999987632 12388999999999999999999975432222223468899999999999999
Q ss_pred ccCCCCCCCCCceeEEEeCCEEEEEecCCCC-------CcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEE
Q 008089 182 TTSGNPPSARDSHTCSSWKNKIIVIGGEDGH-------DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNL 254 (578)
Q Consensus 182 ~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~-------~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~i 254 (578)
+..+.+|.+|..|++++++++|||+||.... ...++++++||+++++|+++...+.+|.+|..|++++++++|
T Consensus 175 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~i 254 (341)
T PLN02153 175 PDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYI 254 (341)
T ss_pred CCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEE
Confidence 8776677899999999999999999996421 123678999999999999998877789999999999999999
Q ss_pred EEEcCccC--------CCCccCcEEEEECCCCcEEEEEeCCCCCCCc--eeeeEeeeeccCCCEEEEEccccCCCCccCc
Q 008089 255 FVFGGFTD--------SQNLYDDLYMIDVDSGLWTKVITTGEGPSAR--FSVAGDCLDPLKGGVLVFIGGCNKSLEALDD 324 (578)
Q Consensus 255 yV~GG~~~--------~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r--~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d 324 (578)
|||||... .....+++|+||+++++|+.+...+.+|.+| ..++.+.+ ..++.|||+||++...+.++|
T Consensus 255 yv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v--~~~~~~~~~gG~~~~~~~~~~ 332 (341)
T PLN02153 255 IIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATV--YGKNGLLMHGGKLPTNERTDD 332 (341)
T ss_pred EEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCcccccccccc--CCcceEEEEcCcCCCCccccc
Confidence 99999742 2335689999999999999997654444444 33333322 345689999999888788999
Q ss_pred EEEEec
Q 008089 325 MYYLYT 330 (578)
Q Consensus 325 ~~~l~~ 330 (578)
+|.++.
T Consensus 333 ~~~~~~ 338 (341)
T PLN02153 333 LYFYAV 338 (341)
T ss_pred eEEEec
Confidence 998864
No 3
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=5e-43 Score=382.86 Aligned_cols=297 Identities=28% Similarity=0.434 Sum_probs=250.5
Q ss_pred cCCCCCCCcceEEEEEcCCCEEEEEcCCCCCCC-CcccEEEEEcCCCcEEEeeecCCCCC-CCcceeEEEECCEEEEEcc
Q 008089 25 SSSGPGKRWGHTCNAIKGGRFLYVFGGYGKDNC-QTNQVHVFDTVNQTWSQPVIKGSPPT-PRDSHSCTTVGENLYVFGG 102 (578)
Q Consensus 25 ~g~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~~~-~~~~v~~yD~~t~~W~~l~~~g~~P~-~R~~hs~~~~~~kIYv~GG 102 (578)
.+..|.+|.+|+++++ +++||||||...... ..+++|+||+.+++|..+...+.+|. .|.+|++++++++||||||
T Consensus 159 ~~~~P~pR~~h~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG 236 (470)
T PLN02193 159 KGEGPGLRCSHGIAQV--GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGG 236 (470)
T ss_pred CCCCCCCccccEEEEE--CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECC
Confidence 4567999999999998 568999999854332 34689999999999998776666665 4679999999999999999
Q ss_pred cCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEec
Q 008089 103 TDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT 182 (578)
Q Consensus 103 ~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~ 182 (578)
.+....++++|+||+.+++|+++...+..|.+|.+|++++++++||||||+.. ....+++++||+.+++|..++
T Consensus 237 ~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~------~~~~~~~~~yd~~t~~W~~~~ 310 (470)
T PLN02193 237 RDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSA------TARLKTLDSYNIVDKKWFHCS 310 (470)
T ss_pred CCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCC------CCCcceEEEEECCCCEEEeCC
Confidence 98877889999999999999998765556899999999999999999999642 234689999999999999998
Q ss_pred cCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccC
Q 008089 183 TSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTD 262 (578)
Q Consensus 183 ~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~ 262 (578)
..+.+|.+|..|++++++++|||+||.++. .++++++||+++++|+.+...+..|.+|..|+++.++++||||||...
T Consensus 311 ~~~~~~~~R~~~~~~~~~gkiyviGG~~g~--~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~ 388 (470)
T PLN02193 311 TPGDSFSIRGGAGLEVVQGKVWVVYGFNGC--EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIA 388 (470)
T ss_pred CCCCCCCCCCCcEEEEECCcEEEEECCCCC--ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccC
Confidence 766778899999999999999999998654 468999999999999999887778999999999999999999999853
Q ss_pred C--------CCccCcEEEEECCCCcEEEEEeCC---CCCCCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEecc
Q 008089 263 S--------QNLYDDLYMIDVDSGLWTKVITTG---EGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 331 (578)
Q Consensus 263 ~--------~~~~~dv~~ydi~t~~W~~l~~~~---~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~~~ 331 (578)
. ...++++|+||+.+++|+.+...+ ..|.+|..++++......++.|++|||.+.....++|+|+|+++
T Consensus 389 ~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~ 468 (470)
T PLN02193 389 MDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGID 468 (470)
T ss_pred CccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecC
Confidence 1 235689999999999999998654 35788876654322223456799999999888899999999765
No 4
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=9.4e-40 Score=356.77 Aligned_cols=390 Identities=35% Similarity=0.554 Sum_probs=316.0
Q ss_pred cccCCCCCCCcceEEEEEcCCCEEEEEcCCCCCCCCcc-cEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEc
Q 008089 23 EISSSGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTN-QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFG 101 (578)
Q Consensus 23 ~~~g~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~-~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~G 101 (578)
...+..|.+|++|+++.+ ++++|||||........+ ++|+||..+..|......+..|.+|++|++++++++||+||
T Consensus 52 ~~~~~~p~~R~~hs~~~~--~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfG 129 (482)
T KOG0379|consen 52 DVLGVGPIPRAGHSAVLI--GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFG 129 (482)
T ss_pred ccCCCCcchhhccceeEE--CCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEc
Confidence 356789999999999999 678999999977654444 69999999999999999999999999999999999999999
Q ss_pred ccCC-CCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEE
Q 008089 102 GTDG-MNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR 180 (578)
Q Consensus 102 G~~~-~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~ 180 (578)
|.+. ...+++++.||+.|++|..+...+.+|.+|.+|+++.++++||||||++... ...|++|+||+.+.+|.+
T Consensus 130 G~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~-----~~~ndl~i~d~~~~~W~~ 204 (482)
T KOG0379|consen 130 GTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTG-----DSLNDLHIYDLETSTWSE 204 (482)
T ss_pred cccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcc-----cceeeeeeecccccccee
Confidence 9985 6678999999999999999999899999999999999999999999975432 278999999999999999
Q ss_pred eccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCc
Q 008089 181 ATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGF 260 (578)
Q Consensus 181 ~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~ 260 (578)
+.+.+..|.||++|++++++++++||||....+.+++|+|+||+.+..|..+...+..|.+|++|+++..+++++|+||.
T Consensus 205 ~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~ 284 (482)
T KOG0379|consen 205 LDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGG 284 (482)
T ss_pred cccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCC
Confidence 99999999999999999999999999999877779999999999999999999999999999999999999999999999
Q ss_pred cCCCC-ccCcEEEEECCCCcEEEEEeCC-CCCCCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEeccccc----
Q 008089 261 TDSQN-LYDDLYMIDVDSGLWTKVITTG-EGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN---- 334 (578)
Q Consensus 261 ~~~~~-~~~dv~~ydi~t~~W~~l~~~~-~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~~~~~~---- 334 (578)
..... .+.++|.||+++..|..+...+ ..|.+|+.++..+........+.++||........++++.+......
T Consensus 285 ~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (482)
T KOG0379|consen 285 TDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQIKLLSRKNE 364 (482)
T ss_pred cccccccccccccccccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhcccccccccccCCc
Confidence 77533 6899999999999999999887 88999999998888766677788888877776777777755543322
Q ss_pred ceecccchhhHhhHhhhhccccCCccccceEEecccCCCCCCCCccccCCCCCCCccCCcccceeeeeeccccCCceEEE
Q 008089 335 ERKLEKLSLRKQLKLKCQEQNFTPVHDRALVRIDTISDVHQPTPLLSYGEPRRNNFPLNEGKKTFQAKVTESFPLGYTIE 414 (578)
Q Consensus 335 ~~~l~~ls~~k~lk~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~~~f~~r~~~~~~~~~~~~ 414 (578)
+.+.......+.....+..... ...........+.- ........+....+.|+..+++..-...|++|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~r----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (482)
T KOG0379|consen 365 VQEPGTRAVEKVLALFRAESSA--ICIAELLYHERRRR----------NDSLKNTLQVKELSILCLDRIGLETFEKYTQE 432 (482)
T ss_pred ccccccccchhhHhhhhccccc--cchHHhhhcchhhh----------cccccceecccchhhhhhhhhhhhccchhhhh
Confidence 2223333333333333333210 00000000000000 11122233334677888898998999999999
Q ss_pred EeEcCceeeeeeeecCC
Q 008089 415 TTIDGKPLRGILFANKP 431 (578)
Q Consensus 415 ~~~~~~~~~~~l~~~~~ 431 (578)
.+++..-...+.|.++-
T Consensus 433 ~~~~~~~~~~~~~~~~~ 449 (482)
T KOG0379|consen 433 SLTLFLFGGNVDLTEES 449 (482)
T ss_pred hhhhhhhccccCcchhc
Confidence 99988888888887765
No 5
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2.4e-40 Score=340.03 Aligned_cols=301 Identities=32% Similarity=0.548 Sum_probs=259.7
Q ss_pred ccCCCCCCCcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEccc
Q 008089 24 ISSSGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGT 103 (578)
Q Consensus 24 ~~g~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~ 103 (578)
..|.-|.+|+||.+|+++ ..|+||||.++. ..+++++||..+++|..+...|++|.+.+.|+++..+.+||+|||+
T Consensus 25 ~tGPvPrpRHGHRAVaik--ELiviFGGGNEG--iiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGM 100 (830)
T KOG4152|consen 25 STGPVPRPRHGHRAVAIK--ELIVIFGGGNEG--IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGM 100 (830)
T ss_pred ccCCCCCccccchheeee--eeEEEecCCccc--chhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccE
Confidence 357889999999999994 489999997664 6788999999999999999999999999999999999999999999
Q ss_pred CCCC-CCCcEEEEECCCCeEEecc----cCCCCCCCCcccEEEEECCEEEEEccCCCCCC---CCCceeeceEEEEEcCc
Q 008089 104 DGMN-PLRDLHILDTSSHTWISPS----VRGEGPEAREGHSAALVGKRLFIFGGCGKSSN---TNDEVYYNDLYILNTET 175 (578)
Q Consensus 104 ~~~~-~~~~v~~yD~~t~~W~~l~----~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~---~~~~~~~ndv~~yd~~t 175 (578)
.+.+ +.|++|.+......|+++. ..|.+|.||.+|+..+++++.|+|||..++.+ ++-..|+||+|++++..
T Consensus 101 vEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~ 180 (830)
T KOG4152|consen 101 VEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRP 180 (830)
T ss_pred eeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEecc
Confidence 7764 7799999988888998764 35678999999999999999999999865543 33457899999999884
Q ss_pred ----ceEEEeccCCCCCCCCCceeEEEe------CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCcee
Q 008089 176 ----FVWKRATTSGNPPSARDSHTCSSW------KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGH 245 (578)
Q Consensus 176 ----~~W~~~~~~g~~p~~R~~h~~~~~------~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~h 245 (578)
-.|....+.|..|.+|.+|+++++ ..+||||||+.+. .++|+|.+|+++.+|.+....|..|.||+.|
T Consensus 181 Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~--RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLH 258 (830)
T KOG4152|consen 181 GSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC--RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLH 258 (830)
T ss_pred CCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc--cccceeEEecceeecccccccCCCCCCcccc
Confidence 369999999999999999999998 3479999999876 7999999999999999999999999999999
Q ss_pred EEEEeCCEEEEEcCccCC-------------CCccCcEEEEECCCCcEEEEEe----CCCCCCCceeeeEeeeeccCCCE
Q 008089 246 STVAFGKNLFVFGGFTDS-------------QNLYDDLYMIDVDSGLWTKVIT----TGEGPSARFSVAGDCLDPLKGGV 308 (578)
Q Consensus 246 s~v~~~~~iyV~GG~~~~-------------~~~~~dv~~ydi~t~~W~~l~~----~~~~P~~r~~~~~~~~~~~~~~~ 308 (578)
++..++++||||||+... -.+.+.+-++|+.+..|..+.. ....|++|.+|+++.+ +.+
T Consensus 259 sa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAi----gtR 334 (830)
T KOG4152|consen 259 SATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAI----GTR 334 (830)
T ss_pred cceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEe----ccE
Confidence 999999999999998521 1257889999999999998753 2247999999887765 889
Q ss_pred EEEEccccCC------CCccCcEEEEeccccc
Q 008089 309 LVFIGGCNKS------LEALDDMYYLYTGLVN 334 (578)
Q Consensus 309 l~v~GG~~~~------~~~~~d~~~l~~~~~~ 334 (578)
|||.-|.+.- ...+.|+|+|+++...
T Consensus 335 lYiWSGRDGYrKAwnnQVCCkDlWyLdTekPp 366 (830)
T KOG4152|consen 335 LYIWSGRDGYRKAWNNQVCCKDLWYLDTEKPP 366 (830)
T ss_pred EEEEeccchhhHhhccccchhhhhhhcccCCC
Confidence 9999887643 3446799999988765
No 6
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=3.7e-37 Score=336.60 Aligned_cols=289 Identities=26% Similarity=0.386 Sum_probs=239.4
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCccc--EEEEEcCC----CcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCC-C-C
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQ--VHVFDTVN----QTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGM-N-P 108 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~--v~~yD~~t----~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~-~-~ 108 (578)
.+.+. +++|+.|+|..... ++. +|.+++.+ ++|.++...+.+|.+|.+|+++.++++|||+||.... . .
T Consensus 115 ~f~~~-~~~ivgf~G~~~~~--~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~ 191 (470)
T PLN02193 115 KFVLQ-GGKIVGFHGRSTDV--LHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPI 191 (470)
T ss_pred EEEEc-CCeEEEEeccCCCc--EEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCe
Confidence 33444 66899999986543 444 45557544 7999988777789999999999999999999997532 2 3
Q ss_pred CCcEEEEECCCCeEEecccCCCCCC-CCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCC
Q 008089 109 LRDLHILDTSSHTWISPSVRGEGPE-AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 187 (578)
Q Consensus 109 ~~~v~~yD~~t~~W~~l~~~g~~P~-~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~ 187 (578)
.+++|+||+.+++|+.++..++.|. .|.+|+++.++++||||||+.. ...++++|+||+.+++|+++.+.+..
T Consensus 192 ~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~------~~~~ndv~~yD~~t~~W~~l~~~~~~ 265 (470)
T PLN02193 192 DKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDA------SRQYNGFYSFDTTTNEWKLLTPVEEG 265 (470)
T ss_pred eCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCC------CCCCccEEEEECCCCEEEEcCcCCCC
Confidence 4789999999999998776666665 4679999999999999999642 23578999999999999999876666
Q ss_pred CCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCcc
Q 008089 188 PSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLY 267 (578)
Q Consensus 188 p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~ 267 (578)
|.+|..|++++++++||||||.+... .++++++||+.+++|+.+...+.+|.+|.+|++++++++|||+||.... .+
T Consensus 266 P~~R~~h~~~~~~~~iYv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~--~~ 342 (470)
T PLN02193 266 PTPRSFHSMAADEENVYVFGGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC--EV 342 (470)
T ss_pred CCCccceEEEEECCEEEEECCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC--cc
Confidence 89999999999999999999987654 6789999999999999998766678899999999999999999998642 47
Q ss_pred CcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCC--------CCccCcEEEEecccccceecc
Q 008089 268 DDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS--------LEALDDMYYLYTGLVNERKLE 339 (578)
Q Consensus 268 ~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~--------~~~~~d~~~l~~~~~~~~~l~ 339 (578)
+++++||+.+++|+++.+.+..|.+|..++++.+ +++|||+||.... ...++|+|.|++.+..|..+.
T Consensus 343 ~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~ 418 (470)
T PLN02193 343 DDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV----GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLD 418 (470)
T ss_pred CceEEEECCCCEEEEeccCCCCCCCcceeEEEEE----CCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcc
Confidence 8999999999999999988888999988886654 7899999998641 235689999999999987765
Q ss_pred cc
Q 008089 340 KL 341 (578)
Q Consensus 340 ~l 341 (578)
.+
T Consensus 419 ~~ 420 (470)
T PLN02193 419 KF 420 (470)
T ss_pred cC
Confidence 44
No 7
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.2e-37 Score=298.97 Aligned_cols=251 Identities=29% Similarity=0.584 Sum_probs=222.2
Q ss_pred CceeeccCCChhhhhhhhcccccccC---CCCCCCcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeee
Q 008089 1 MRWEKVQPKSPQALVAQQLVSSEISS---SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVI 77 (578)
Q Consensus 1 ~~W~~~~~~~~~~~~~~~~~~~~~~g---~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~ 77 (578)
|||.++++- +--..|.+ .-|--|+||+.|.+.+ ++||+||.+.+....|-+|.||++++.|+++.+
T Consensus 54 ~RWtk~pp~---------~~ka~i~~~yp~VPyqRYGHtvV~y~d--~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v 122 (392)
T KOG4693|consen 54 YRWTKMPPG---------ITKATIESPYPAVPYQRYGHTVVEYQD--KAYVWGGRNDDEGACNLLYEFDPETNVWKKPEV 122 (392)
T ss_pred eeEEecCcc---------cccccccCCCCccchhhcCceEEEEcc--eEEEEcCccCcccccceeeeeccccccccccce
Confidence 799999942 22222332 3577899999999954 799999999877788999999999999999999
Q ss_pred cCCCCCCCcceeEEEECCEEEEEcccCC--CCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCC
Q 008089 78 KGSPPTPRDSHSCTTVGENLYVFGGTDG--MNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGK 155 (578)
Q Consensus 78 ~g~~P~~R~~hs~~~~~~kIYv~GG~~~--~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~ 155 (578)
.|..|.+|.+|+++++++.+|||||+.. ....++++++|+.|.+|+.+.+.|++|.-|..|+++++++.+|||||+.+
T Consensus 123 ~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D 202 (392)
T KOG4693|consen 123 EGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSD 202 (392)
T ss_pred eeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccc
Confidence 9999999999999999999999999854 34678999999999999999999999999999999999999999999865
Q ss_pred CCC---CCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCC-CcccCceEEEECCCCceEE
Q 008089 156 SSN---TNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGH-DYYLSDVHILDTDTLTWKE 231 (578)
Q Consensus 156 ~~~---~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~-~~~~~di~~yD~~t~~W~~ 231 (578)
... ...+.|.+.+..+|+.|..|....+.+..|..|.+|++.+++++||+|||+++. +.-++|+|+|||.+..|..
T Consensus 203 ~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~ 282 (392)
T KOG4693|consen 203 ESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSV 282 (392)
T ss_pred cCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchhee
Confidence 432 234678899999999999999998888889999999999999999999999864 3468999999999999999
Q ss_pred ecCCCCCCCCCceeEEEEeCCEEEEEcCccC
Q 008089 232 LNTSGMVLSPRAGHSTVAFGKNLFVFGGFTD 262 (578)
Q Consensus 232 v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~ 262 (578)
+...|.-|.+|..+++++.++++|+|||...
T Consensus 283 I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 283 ISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred eeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 9999999999999999999999999999753
No 8
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=8.8e-36 Score=330.65 Aligned_cols=283 Identities=23% Similarity=0.387 Sum_probs=243.7
Q ss_pred CCCCCcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccC-CC
Q 008089 28 GPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTD-GM 106 (578)
Q Consensus 28 ~P~~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~-~~ 106 (578)
.+.+|..... .....||++||+.......+.+..||+.++.|..+. ++|.+|..+++++++++||++||++ +.
T Consensus 272 ~~~~~t~~r~---~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a---~m~~~r~~~~~~~~~~~lYv~GG~~~~~ 345 (571)
T KOG4441|consen 272 MQSPRTRPRR---SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLA---PMPSPRCRVGVAVLNGKLYVVGGYDSGS 345 (571)
T ss_pred ccCCCcccCc---CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecC---CCCcccccccEEEECCEEEEEccccCCC
Confidence 4555544443 224579999999875557788999999999999965 8999999999999999999999999 78
Q ss_pred CCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCC
Q 008089 107 NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 186 (578)
Q Consensus 107 ~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~ 186 (578)
..++.+|+||+.+++|+.++ ++..+|.+++++++++.||++||++ +...++.+++||+.+++|..+. +
T Consensus 346 ~~l~~ve~YD~~~~~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~d------g~~~l~svE~YDp~~~~W~~va---~ 413 (571)
T KOG4441|consen 346 DRLSSVERYDPRTNQWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFD------GEKSLNSVECYDPVTNKWTPVA---P 413 (571)
T ss_pred cccceEEEecCCCCceeccC---CccCccccceeEEECCEEEEEeccc------cccccccEEEecCCCCcccccC---C
Confidence 88999999999999999876 8999999999999999999999964 5567899999999999999987 5
Q ss_pred CCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCc
Q 008089 187 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNL 266 (578)
Q Consensus 187 ~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~ 266 (578)
++.+|++|++++++++||++||.++...+++.+++|||.+++|+.+++ ++.+|.++++++++++||++||+++ ...
T Consensus 414 m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~---M~~~R~~~g~a~~~~~iYvvGG~~~-~~~ 489 (571)
T KOG4441|consen 414 MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAP---MNTRRSGFGVAVLNGKIYVVGGFDG-TSA 489 (571)
T ss_pred CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCC---cccccccceEEEECCEEEEECCccC-CCc
Confidence 677999999999999999999998877689999999999999999998 9999999999999999999999987 556
Q ss_pred cCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEecccccceeccc
Q 008089 267 YDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEK 340 (578)
Q Consensus 267 ~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~~~~~~~~~l~~ 340 (578)
+..+++||+++++|+.+.++ +.+|..+..+. .++++|++||++.. ..++.+-.++.....|.....
T Consensus 490 ~~~VE~ydp~~~~W~~v~~m---~~~rs~~g~~~----~~~~ly~vGG~~~~-~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 490 LSSVERYDPETNQWTMVAPM---TSPRSAVGVVV----LGGKLYAVGGFDGN-NNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred cceEEEEcCCCCceeEcccC---ccccccccEEE----ECCEEEEEecccCc-cccceeEEcCCCCCceeeCCC
Confidence 77799999999999999654 44555544333 48999999997654 567778888888877766544
No 9
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.1e-34 Score=305.01 Aligned_cols=262 Identities=29% Similarity=0.447 Sum_probs=213.3
Q ss_pred CCCcEEEeeec-CCCCCCCcceeEEEECCEEEEEcccCCC--CCCCcEEEEECCCCeEEecccCCCCCCC-CcccEEEEE
Q 008089 68 VNQTWSQPVIK-GSPPTPRDSHSCTTVGENLYVFGGTDGM--NPLRDLHILDTSSHTWISPSVRGEGPEA-REGHSAALV 143 (578)
Q Consensus 68 ~t~~W~~l~~~-g~~P~~R~~hs~~~~~~kIYv~GG~~~~--~~~~~v~~yD~~t~~W~~l~~~g~~P~~-R~~hs~~~~ 143 (578)
....|.++... +.+|.+|.+|++++++++|||+||.... ...+++|+||+.+++|++++..+..|.. +.+|+++++
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~ 84 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV 84 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE
Confidence 46779988643 4579999999999999999999998542 2458999999999999987755444443 458999999
Q ss_pred CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccC--CCCCCCCCceeEEEeCCEEEEEecCCCCC-----ccc
Q 008089 144 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTS--GNPPSARDSHTCSSWKNKIIVIGGEDGHD-----YYL 216 (578)
Q Consensus 144 ~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~--g~~p~~R~~h~~~~~~~~lyV~GG~~~~~-----~~~ 216 (578)
+++||||||+.. ...++++++||+.+++|+.++.. ...|.+|..|++++++++||||||..... ..+
T Consensus 85 ~~~iyv~GG~~~------~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 158 (341)
T PLN02153 85 GTKLYIFGGRDE------KREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERF 158 (341)
T ss_pred CCEEEEECCCCC------CCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCccc
Confidence 999999999642 23468999999999999988643 12378999999999999999999986432 245
Q ss_pred CceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCC-------CCccCcEEEEECCCCcEEEEEeCCCC
Q 008089 217 SDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS-------QNLYDDLYMIDVDSGLWTKVITTGEG 289 (578)
Q Consensus 217 ~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~-------~~~~~dv~~ydi~t~~W~~l~~~~~~ 289 (578)
+++++||+++++|+.+...+.+|.+|.+|++++++++|||+||.... ...++++++||+.+++|+++...+..
T Consensus 159 ~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~ 238 (341)
T PLN02153 159 RTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAK 238 (341)
T ss_pred ceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCC
Confidence 78999999999999998866667899999999999999999997521 12368899999999999999887778
Q ss_pred CCCceeeeEeeeeccCCCEEEEEccccC--------CCCccCcEEEEecccccceecc
Q 008089 290 PSARFSVAGDCLDPLKGGVLVFIGGCNK--------SLEALDDMYYLYTGLVNERKLE 339 (578)
Q Consensus 290 P~~r~~~~~~~~~~~~~~~l~v~GG~~~--------~~~~~~d~~~l~~~~~~~~~l~ 339 (578)
|.+|..++++++ +++||||||... .....+|+|.|++....|..+.
T Consensus 239 P~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 239 PSARSVFAHAVV----GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred CCCcceeeeEEE----CCEEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence 899988886654 789999999742 2234679999999998887664
No 10
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=4.5e-34 Score=300.99 Aligned_cols=278 Identities=23% Similarity=0.306 Sum_probs=215.3
Q ss_pred CCCCCCcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEc--CCCcEEEeeecCCCC-CCCcceeEEEECCEEEEEccc
Q 008089 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDT--VNQTWSQPVIKGSPP-TPRDSHSCTTVGENLYVFGGT 103 (578)
Q Consensus 27 ~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~--~t~~W~~l~~~g~~P-~~R~~hs~~~~~~kIYv~GG~ 103 (578)
.+|.+|..++++++ +++|||+||... +++++||+ .+++|..+. ++| .+|..|++++++++||++||.
T Consensus 3 ~lp~~~~~~~~~~~--~~~vyv~GG~~~-----~~~~~~d~~~~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~ 72 (346)
T TIGR03547 3 DLPVGFKNGTGAII--GDKVYVGLGSAG-----TSWYKLDLKKPSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGI 72 (346)
T ss_pred CCCccccCceEEEE--CCEEEEEccccC-----CeeEEEECCCCCCCceECC---CCCCCCcccceEEEECCEEEEEeCC
Confidence 56889998888788 568999999742 56899996 578899965 777 589999999999999999998
Q ss_pred CCCC------CCCcEEEEECCCCeEEecccCCCCCCCCcccEEE-EECCEEEEEccCCCCCC-----------C------
Q 008089 104 DGMN------PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAA-LVGKRLFIFGGCGKSSN-----------T------ 159 (578)
Q Consensus 104 ~~~~------~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~-~~~~~lyvfGG~~~~~~-----------~------ 159 (578)
.... .++++|+||+.+++|+++.. .+|.+|.+|+++ +++++||++||+..... .
T Consensus 73 ~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~ 150 (346)
T TIGR03547 73 GKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKD 150 (346)
T ss_pred CCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhh
Confidence 5422 47899999999999998762 467788888877 78999999999742100 0
Q ss_pred -----------CCceeeceEEEEEcCcceEEEeccCCCCCC-CCCceeEEEeCCEEEEEecCCCCCcccCceEEEE--CC
Q 008089 160 -----------NDEVYYNDLYILNTETFVWKRATTSGNPPS-ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILD--TD 225 (578)
Q Consensus 160 -----------~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~-~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD--~~ 225 (578)
....+.+++++||+.+++|+.+. ++|. +|..|+++.++++|||+||.........+++.|| ++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~ 227 (346)
T TIGR03547 151 KLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGG 227 (346)
T ss_pred hhHHHHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCC
Confidence 00012478999999999999986 4554 6888999999999999999865443345566665 57
Q ss_pred CCceEEecCCCCCCCCC-------ceeEEEEeCCEEEEEcCccCCC----------------CccCcEEEEECCCCcEEE
Q 008089 226 TLTWKELNTSGMVLSPR-------AGHSTVAFGKNLFVFGGFTDSQ----------------NLYDDLYMIDVDSGLWTK 282 (578)
Q Consensus 226 t~~W~~v~~~g~~p~~R-------~~hs~v~~~~~iyV~GG~~~~~----------------~~~~dv~~ydi~t~~W~~ 282 (578)
+++|+.+.. +|.+| .+|++++++++|||+||.+... .....+++||+++++|+.
T Consensus 228 ~~~W~~~~~---m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~ 304 (346)
T TIGR03547 228 KLEWNKLPP---LPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSK 304 (346)
T ss_pred CceeeecCC---CCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccc
Confidence 789999887 55443 4677888999999999985311 012468999999999999
Q ss_pred EEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEe
Q 008089 283 VITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLY 329 (578)
Q Consensus 283 l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~ 329 (578)
+..+ |.+|..++++. .+++|||+||.+.....++|+|.+.
T Consensus 305 ~~~l---p~~~~~~~~~~----~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 305 VGKL---PQGLAYGVSVS----WNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred cCCC---CCCceeeEEEE----cCCEEEEEeccCCCCCEeeeEEEEE
Confidence 8764 66776665433 4899999999988888899999764
No 11
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=8.5e-35 Score=323.55 Aligned_cols=242 Identities=16% Similarity=0.227 Sum_probs=208.0
Q ss_pred CCCCCCcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCC
Q 008089 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGM 106 (578)
Q Consensus 27 ~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~ 106 (578)
.+|.+|.+|+++++ +++||++||.+......+.+++||+.+++|..++ ++|.+|.++++++++++||++||.++.
T Consensus 289 ~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~---~m~~~R~~~~~~~~~g~IYviGG~~~~ 363 (557)
T PHA02713 289 TIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELP---PMIKNRCRFSLAVIDDTIYAIGGQNGT 363 (557)
T ss_pred CCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCC---CCcchhhceeEEEECCEEEEECCcCCC
Confidence 67889999998888 5689999998643445788999999999999854 899999999999999999999999877
Q ss_pred CCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCC------------CCceeeceEEEEEcC
Q 008089 107 NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNT------------NDEVYYNDLYILNTE 174 (578)
Q Consensus 107 ~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~------------~~~~~~ndv~~yd~~ 174 (578)
..++++++||+.+++|+.++ ++|.+|.++++++++++||++||....... ......+.+++|||.
T Consensus 364 ~~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~ 440 (557)
T PHA02713 364 NVERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV 440 (557)
T ss_pred CCCceEEEEECCCCeEEECC---CCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCC
Confidence 77889999999999999876 789999999999999999999997432100 011236789999999
Q ss_pred cceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCC-CceEEecCCCCCCCCCceeEEEEeCCE
Q 008089 175 TFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDT-LTWKELNTSGMVLSPRAGHSTVAFGKN 253 (578)
Q Consensus 175 t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t-~~W~~v~~~g~~p~~R~~hs~v~~~~~ 253 (578)
+++|+.++ +++.+|..+++++++++|||+||.++.....+.+++|||++ ++|+.+.. +|.+|..+++++++++
T Consensus 441 td~W~~v~---~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~---m~~~r~~~~~~~~~~~ 514 (557)
T PHA02713 441 NNIWETLP---NFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT---TESRLSALHTILHDNT 514 (557)
T ss_pred CCeEeecC---CCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc---cCcccccceeEEECCE
Confidence 99999887 67889999999999999999999875443445689999999 89999987 9999999999999999
Q ss_pred EEEEcCccCCCCccCcEEEEECCCCcEEEEEeC
Q 008089 254 LFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITT 286 (578)
Q Consensus 254 iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~ 286 (578)
||++||+++. ..+++||+.+++|+.+.+.
T Consensus 515 iyv~Gg~~~~----~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 515 IMMLHCYESY----MLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred EEEEeeecce----eehhhcCcccccccchhhh
Confidence 9999998752 4789999999999998664
No 12
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.1e-33 Score=295.34 Aligned_cols=272 Identities=19% Similarity=0.260 Sum_probs=209.3
Q ss_pred CCCcceEEEEEcCCCEEEEEcCCCCCC---------CCcccEEEEEcCC--CcEEEeeecCCCCCCCcceeEEEECCEEE
Q 008089 30 GKRWGHTCNAIKGGRFLYVFGGYGKDN---------CQTNQVHVFDTVN--QTWSQPVIKGSPPTPRDSHSCTTVGENLY 98 (578)
Q Consensus 30 ~~R~ghs~v~v~~g~~Iyv~GG~~~~~---------~~~~~v~~yD~~t--~~W~~l~~~g~~P~~R~~hs~~~~~~kIY 98 (578)
..+.+|.++++ ++.|||+||++... ...+++|+|+... .+|..+ +++|.+|..+++++++++||
T Consensus 2 ~~~~g~~~~~~--~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~---~~lp~~r~~~~~~~~~~~ly 76 (323)
T TIGR03548 2 LGVAGCYAGII--GDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKD---GQLPYEAAYGASVSVENGIY 76 (323)
T ss_pred CceeeEeeeEE--CCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEc---ccCCccccceEEEEECCEEE
Confidence 46778999998 66899999986543 1346789886333 268875 48899999899999999999
Q ss_pred EEcccCCCCCCCcEEEEECCCCeEE-ecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcce
Q 008089 99 VFGGTDGMNPLRDLHILDTSSHTWI-SPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV 177 (578)
Q Consensus 99 v~GG~~~~~~~~~v~~yD~~t~~W~-~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~ 177 (578)
++||.++...++++|+||+.+++|. .....+++|.+|..|++++++++|||+||.. .....+++++||+.+++
T Consensus 77 viGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~------~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 77 YIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNR------NGKPSNKSYLFNLETQE 150 (323)
T ss_pred EEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcC------CCccCceEEEEcCCCCC
Confidence 9999988778899999999999983 2222347899999999999999999999953 12346899999999999
Q ss_pred EEEeccCCCCC-CCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCC--CCCCCCceeEEE-EeCCE
Q 008089 178 WKRATTSGNPP-SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSG--MVLSPRAGHSTV-AFGKN 253 (578)
Q Consensus 178 W~~~~~~g~~p-~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g--~~p~~R~~hs~v-~~~~~ 253 (578)
|+.++. +| .+|..|++++++++||||||.+.. ...++++||+++++|+.+.... ..|..+.+++++ ..+++
T Consensus 151 W~~~~~---~p~~~r~~~~~~~~~~~iYv~GG~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~ 225 (323)
T TIGR03548 151 WFELPD---FPGEPRVQPVCVKLQNELYVFGGGSNI--AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESL 225 (323)
T ss_pred eeECCC---CCCCCCCcceEEEECCEEEEEcCCCCc--cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCE
Confidence 999863 34 478899999999999999998654 3467899999999999997632 223334445544 45789
Q ss_pred EEEEcCccCCC-------------------------------CccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeee
Q 008089 254 LFVFGGFTDSQ-------------------------------NLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLD 302 (578)
Q Consensus 254 iyV~GG~~~~~-------------------------------~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~ 302 (578)
|||+||.+... .+.+++++||+.+++|+.+..++ ..+|..++++.
T Consensus 226 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p--~~~r~~~~~~~-- 301 (323)
T TIGR03548 226 LLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSP--FFARCGAALLL-- 301 (323)
T ss_pred EEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccc--ccccCchheEE--
Confidence 99999986321 12467999999999999987542 24676665544
Q ss_pred ccCCCEEEEEccccCCCCccC
Q 008089 303 PLKGGVLVFIGGCNKSLEALD 323 (578)
Q Consensus 303 ~~~~~~l~v~GG~~~~~~~~~ 323 (578)
.++.||++||.........
T Consensus 302 --~~~~iyv~GG~~~pg~rt~ 320 (323)
T TIGR03548 302 --TGNNIFSINGELKPGVRTP 320 (323)
T ss_pred --ECCEEEEEeccccCCcCCc
Confidence 3889999999876554433
No 13
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=8.1e-34 Score=315.73 Aligned_cols=261 Identities=14% Similarity=0.145 Sum_probs=214.2
Q ss_pred EEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccC-CCCCCCcEEEEECCCCeEE
Q 008089 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTD-GMNPLRDLHILDTSSHTWI 123 (578)
Q Consensus 45 ~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~-~~~~~~~v~~yD~~t~~W~ 123 (578)
.|++.||... .....+++||+.+++|..+. ++|.+|.+|++++++++||++||.+ ....++++++||+.+++|.
T Consensus 259 ~l~~~~g~~~--~~~~~v~~yd~~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~ 333 (557)
T PHA02713 259 CLVCHDTKYN--VCNPCILVYNINTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHV 333 (557)
T ss_pred EEEEecCccc--cCCCCEEEEeCCCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEe
Confidence 3556665321 12346899999999999965 8899999999999999999999986 3446789999999999998
Q ss_pred ecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEE
Q 008089 124 SPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKI 203 (578)
Q Consensus 124 ~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~l 203 (578)
.++ ++|.+|.++++++++++||++||.. .....+++++||+.+++|..++ ++|.+|..+++++++++|
T Consensus 334 ~~~---~m~~~R~~~~~~~~~g~IYviGG~~------~~~~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~I 401 (557)
T PHA02713 334 ELP---PMIKNRCRFSLAVIDDTIYAIGGQN------GTNVERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYI 401 (557)
T ss_pred eCC---CCcchhhceeEEEECCEEEEECCcC------CCCCCceEEEEECCCCeEEECC---CCCcccccccEEEECCEE
Confidence 876 7899999999999999999999963 2234678999999999999987 689999999999999999
Q ss_pred EEEecCCCCC-----------------cccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCc
Q 008089 204 IVIGGEDGHD-----------------YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNL 266 (578)
Q Consensus 204 yV~GG~~~~~-----------------~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~ 266 (578)
||+||.++.. ..++.+++|||++++|+.+.+ ++.+|..+++++++++|||+||.++....
T Consensus 402 YviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~---m~~~r~~~~~~~~~~~IYv~GG~~~~~~~ 478 (557)
T PHA02713 402 YIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN---FWTGTIRPGVVSHKDDIYVVCDIKDEKNV 478 (557)
T ss_pred EEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCC---CCcccccCcEEEECCEEEEEeCCCCCCcc
Confidence 9999976431 125789999999999999987 88999999999999999999998754434
Q ss_pred cCcEEEEECCC-CcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEecccccce
Q 008089 267 YDDLYMIDVDS-GLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNER 336 (578)
Q Consensus 267 ~~dv~~ydi~t-~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~~~~~~~~ 336 (578)
.+.+++||+++ ++|+.+.++ |.+|..+.++++ +++||++||++.. ..+..++..+.+|.
T Consensus 479 ~~~ve~Ydp~~~~~W~~~~~m---~~~r~~~~~~~~----~~~iyv~Gg~~~~----~~~e~yd~~~~~W~ 538 (557)
T PHA02713 479 KTCIFRYNTNTYNGWELITTT---ESRLSALHTILH----DNTIMMLHCYESY----MLQDTFNVYTYEWN 538 (557)
T ss_pred ceeEEEecCCCCCCeeEcccc---CcccccceeEEE----CCEEEEEeeecce----eehhhcCccccccc
Confidence 45689999999 899998765 677877766554 8999999999763 24555665555553
No 14
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=5.8e-34 Score=316.16 Aligned_cols=238 Identities=27% Similarity=0.481 Sum_probs=214.7
Q ss_pred CCCCCCcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCC
Q 008089 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGM 106 (578)
Q Consensus 27 ~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~ 106 (578)
.+|.+|..|+++++ +++||++||++.....++.+++||+.+++|..++ +|+.+|.++++++++++||++||+++.
T Consensus 318 ~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~dg~ 392 (571)
T KOG4441|consen 318 PMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFDGE 392 (571)
T ss_pred CCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccC---CccCccccceeEEECCEEEEEeccccc
Confidence 68899998888888 5589999999853447789999999999999954 899999999999999999999999999
Q ss_pred CCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCC
Q 008089 107 NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 186 (578)
Q Consensus 107 ~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~ 186 (578)
+.++++++||+.+++|+.+. +++.+|++|++++++++||++||+... ..+++.+++|||.+++|+.++ +
T Consensus 393 ~~l~svE~YDp~~~~W~~va---~m~~~r~~~gv~~~~g~iYi~GG~~~~-----~~~l~sve~YDP~t~~W~~~~---~ 461 (571)
T KOG4441|consen 393 KSLNSVECYDPVTNKWTPVA---PMLTRRSGHGVAVLGGKLYIIGGGDGS-----SNCLNSVECYDPETNTWTLIA---P 461 (571)
T ss_pred cccccEEEecCCCCcccccC---CCCcceeeeEEEEECCEEEEEcCcCCC-----ccccceEEEEcCCCCceeecC---C
Confidence 99999999999999998765 788899999999999999999996432 227899999999999999998 6
Q ss_pred CCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCc
Q 008089 187 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNL 266 (578)
Q Consensus 187 ~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~ 266 (578)
++.+|.++++++++++||++||.++ ...+..+++||+++++|+.+.. ++.+|..+.++.+++++|++||++. ...
T Consensus 462 M~~~R~~~g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~~W~~v~~---m~~~rs~~g~~~~~~~ly~vGG~~~-~~~ 536 (571)
T KOG4441|consen 462 MNTRRSGFGVAVLNGKIYVVGGFDG-TSALSSVERYDPETNQWTMVAP---MTSPRSAVGVVVLGGKLYAVGGFDG-NNN 536 (571)
T ss_pred cccccccceEEEECCEEEEECCccC-CCccceEEEEcCCCCceeEccc---CccccccccEEEECCEEEEEecccC-ccc
Confidence 8999999999999999999999988 4467779999999999999976 8899999999999999999999754 557
Q ss_pred cCcEEEEECCCCcEEEEEe
Q 008089 267 YDDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 267 ~~dv~~ydi~t~~W~~l~~ 285 (578)
++.+..||+.+++|+.+..
T Consensus 537 l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 537 LNTVECYDPETDTWTEVTE 555 (571)
T ss_pred cceeEEcCCCCCceeeCCC
Confidence 8999999999999999765
No 15
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=291.93 Aligned_cols=258 Identities=29% Similarity=0.553 Sum_probs=223.8
Q ss_pred CCCCCCCcceEEEEEcCCCEEEEEcCCCCC---CCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEEC-CEEEEEc
Q 008089 26 SSGPGKRWGHTCNAIKGGRFLYVFGGYGKD---NCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVG-ENLYVFG 101 (578)
Q Consensus 26 g~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~---~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~kIYv~G 101 (578)
=.+|.||.+.+.++-...+-|++|||.--. ....+++|+||+.+++|+++. .+..|.||.+|.++++. +.+||||
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~-spn~P~pRsshq~va~~s~~l~~fG 139 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVV-SPNAPPPRSSHQAVAVPSNILWLFG 139 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEec-cCCCcCCCccceeEEeccCeEEEec
Confidence 368999999999888777789999996322 235689999999999999987 67889999999999995 8999999
Q ss_pred ccCC----C--CCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCc
Q 008089 102 GTDG----M--NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET 175 (578)
Q Consensus 102 G~~~----~--~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t 175 (578)
|--. . -.+.++|.||+.+++|+++...| .|.+|.||-|++...+|+||||+.+. +....|+||+|+||+++
T Consensus 140 GEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~--nr~y~YyNDvy~FdLdt 216 (521)
T KOG1230|consen 140 GEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDS--NRDYIYYNDVYAFDLDT 216 (521)
T ss_pred cccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecC--CCceEEeeeeEEEeccc
Confidence 9622 1 14689999999999999998765 89999999999999999999998765 45678999999999999
Q ss_pred ceEEEeccCCCCCCCCCceeEEEe-CCEEEEEecCC--------CCCcccCceEEEECCC-----CceEEecCCCCCCCC
Q 008089 176 FVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGED--------GHDYYLSDVHILDTDT-----LTWKELNTSGMVLSP 241 (578)
Q Consensus 176 ~~W~~~~~~g~~p~~R~~h~~~~~-~~~lyV~GG~~--------~~~~~~~di~~yD~~t-----~~W~~v~~~g~~p~~ 241 (578)
.+|.++.+.|..|.+|.+|++++. .+.|||+||+. ..+...+|+|.++++. -.|..+.+.|..|.|
T Consensus 217 ykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPsp 296 (521)
T KOG1230|consen 217 YKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSP 296 (521)
T ss_pred eeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCC
Confidence 999999998889999999999998 99999999984 2345789999999988 789999999999999
Q ss_pred CceeEEEEeCC-EEEEEcCccCC--------CCccCcEEEEECCCCcEEEEEeCC
Q 008089 242 RAGHSTVAFGK-NLFVFGGFTDS--------QNLYDDLYMIDVDSGLWTKVITTG 287 (578)
Q Consensus 242 R~~hs~v~~~~-~iyV~GG~~~~--------~~~~~dv~~ydi~t~~W~~l~~~~ 287 (578)
|.++++++..+ +.|+|||..+- ..++||+|.||+..++|......+
T Consensus 297 Rsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~ 351 (521)
T KOG1230|consen 297 RSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQG 351 (521)
T ss_pred CCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhhcc
Confidence 99999988865 89999998762 236899999999999999876543
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=8.8e-33 Score=294.39 Aligned_cols=280 Identities=21% Similarity=0.259 Sum_probs=212.8
Q ss_pred CCCCCCcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcC--CCcEEEeeecCCCC-CCCcceeEEEECCEEEEEccc
Q 008089 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTV--NQTWSQPVIKGSPP-TPRDSHSCTTVGENLYVFGGT 103 (578)
Q Consensus 27 ~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~--t~~W~~l~~~g~~P-~~R~~hs~~~~~~kIYv~GG~ 103 (578)
.+|.+|..++++++ +++|||+||... +.+++||+. ++.|..+. ++| .+|.+|+++.++++|||+||.
T Consensus 24 ~lP~~~~~~~~~~~--~~~iyv~gG~~~-----~~~~~~d~~~~~~~W~~l~---~~p~~~r~~~~~v~~~~~IYV~GG~ 93 (376)
T PRK14131 24 DLPVPFKNGTGAID--NNTVYVGLGSAG-----TSWYKLDLNAPSKGWTKIA---AFPGGPREQAVAAFIDGKLYVFGGI 93 (376)
T ss_pred CCCcCccCCeEEEE--CCEEEEEeCCCC-----CeEEEEECCCCCCCeEECC---cCCCCCcccceEEEECCEEEEEcCC
Confidence 67889988888777 568999999743 358999986 47899864 565 489999999999999999998
Q ss_pred CC------CCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEE-ECCEEEEEccCCCCCC------------------
Q 008089 104 DG------MNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSN------------------ 158 (578)
Q Consensus 104 ~~------~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~lyvfGG~~~~~~------------------ 158 (578)
.. ...++++|+||+.+++|+.+.. ..|.+|.+|+++. .+++||++||......
T Consensus 94 ~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~ 171 (376)
T PRK14131 94 GKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKD 171 (376)
T ss_pred CCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhh
Confidence 64 1246899999999999999762 3577788888877 8999999999742100
Q ss_pred ----------CCCceeeceEEEEEcCcceEEEeccCCCCCC-CCCceeEEEeCCEEEEEecCCCCCcccCceE--EEECC
Q 008089 159 ----------TNDEVYYNDLYILNTETFVWKRATTSGNPPS-ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVH--ILDTD 225 (578)
Q Consensus 159 ----------~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~-~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~--~yD~~ 225 (578)
.......+++++||+.+++|..+. .+|. +|..|+++.++++|||+||.........+++ .||++
T Consensus 172 ~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~ 248 (376)
T PRK14131 172 KINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGN 248 (376)
T ss_pred hhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCC
Confidence 000013578999999999999876 4554 6888899999999999999754433445555 45778
Q ss_pred CCceEEecCCCCCCCCCc--------eeEEEEeCCEEEEEcCccCCCC----------------ccCcEEEEECCCCcEE
Q 008089 226 TLTWKELNTSGMVLSPRA--------GHSTVAFGKNLFVFGGFTDSQN----------------LYDDLYMIDVDSGLWT 281 (578)
Q Consensus 226 t~~W~~v~~~g~~p~~R~--------~hs~v~~~~~iyV~GG~~~~~~----------------~~~dv~~ydi~t~~W~ 281 (578)
+++|..+.. +|.+|. ++.+++++++|||+||.+.... ....+++||+++++|+
T Consensus 249 ~~~W~~~~~---~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~ 325 (376)
T PRK14131 249 NLKWQKLPD---LPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQ 325 (376)
T ss_pred CcceeecCC---CCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccc
Confidence 999999886 555553 3346778999999999763211 0124679999999999
Q ss_pred EEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEecc
Q 008089 282 KVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 331 (578)
Q Consensus 282 ~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~~~ 331 (578)
.+..+ |.+|..++++. .++.|||+||.......+++++.|...
T Consensus 326 ~~~~l---p~~r~~~~av~----~~~~iyv~GG~~~~~~~~~~v~~~~~~ 368 (376)
T PRK14131 326 KVGEL---PQGLAYGVSVS----WNNGVLLIGGETAGGKAVSDVTLLSWD 368 (376)
T ss_pred ccCcC---CCCccceEEEE----eCCEEEEEcCCCCCCcEeeeEEEEEEc
Confidence 88654 66777765443 489999999997766788999988744
No 17
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=2.2e-33 Score=306.71 Aligned_cols=255 Identities=36% Similarity=0.637 Sum_probs=230.0
Q ss_pred ecCCCCCCCcceeEEEECCEEEEEcccCCCCCCC--cEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCC
Q 008089 77 IKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLR--DLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCG 154 (578)
Q Consensus 77 ~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~--~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~ 154 (578)
..+..|.+|.+|+++.+++++|||||........ ++|+||..+..|......+..|.+|++|+++.++++||+|||..
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~ 132 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTD 132 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEcccc
Confidence 3567899999999999999999999986655444 59999999999999999999999999999999999999999975
Q ss_pred CCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecC
Q 008089 155 KSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT 234 (578)
Q Consensus 155 ~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~ 234 (578)
. .....++++.||+.+.+|..+...+.+|.+|.+|++++++++||||||.+.....++++|+||+++.+|.++..
T Consensus 133 ~-----~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~ 207 (482)
T KOG0379|consen 133 K-----KYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDT 207 (482)
T ss_pred C-----CCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceeccc
Confidence 4 22347899999999999999999999999999999999999999999998877789999999999999999999
Q ss_pred CCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEcc
Q 008089 235 SGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGG 314 (578)
Q Consensus 235 ~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG 314 (578)
.|..|.||.+|++++++++++||||.+....+++|+|+||+.+..|..+...+..|.+|+.|+..+ .+..++|+||
T Consensus 208 ~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~----~~~~~~l~gG 283 (482)
T KOG0379|consen 208 QGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTV----SGDHLLLFGG 283 (482)
T ss_pred CCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEE----ECCEEEEEcC
Confidence 999999999999999999999999998777889999999999999999999999999999999775 4889999999
Q ss_pred ccCCCC-ccCcEEEEecccccceeccc
Q 008089 315 CNKSLE-ALDDMYYLYTGLVNERKLEK 340 (578)
Q Consensus 315 ~~~~~~-~~~d~~~l~~~~~~~~~l~~ 340 (578)
...... .+.|+|.|+.....|..++-
T Consensus 284 ~~~~~~~~l~~~~~l~~~~~~w~~~~~ 310 (482)
T KOG0379|consen 284 GTDPKQEPLGDLYGLDLETLVWSKVES 310 (482)
T ss_pred Ccccccccccccccccccccceeeeec
Confidence 977544 68999999988666655544
No 18
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.9e-32 Score=304.96 Aligned_cols=234 Identities=21% Similarity=0.351 Sum_probs=202.6
Q ss_pred CcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCc
Q 008089 32 RWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRD 111 (578)
Q Consensus 32 R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~ 111 (578)
+..|+++++ ++.||++||........+++++||+.+++|..++ ++|.+|.+|++++++++||++||.++...+++
T Consensus 285 ~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~ 359 (534)
T PHA03098 285 VYCFGSVVL--NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP---ELIYPRKNPGVTVFNNRIYVIGGIYNSISLNT 359 (534)
T ss_pred cccceEEEE--CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECC---CCCcccccceEEEECCEEEEEeCCCCCEecce
Confidence 456677777 5689999999766556678999999999998854 78899999999999999999999987777899
Q ss_pred EEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCC
Q 008089 112 LHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSAR 191 (578)
Q Consensus 112 v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R 191 (578)
+++||+.+++|+..+ ++|.+|.+|+++.++++|||+||.... ....+++++||+.+++|..+. ++|.+|
T Consensus 360 v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~iYv~GG~~~~-----~~~~~~v~~yd~~t~~W~~~~---~~p~~r 428 (534)
T PHA03098 360 VESWKPGESKWREEP---PLIFPRYNPCVVNVNNLIYVIGGISKN-----DELLKTVECFSLNTNKWSKGS---PLPISH 428 (534)
T ss_pred EEEEcCCCCceeeCC---CcCcCCccceEEEECCEEEEECCcCCC-----CcccceEEEEeCCCCeeeecC---CCCccc
Confidence 999999999998865 788999999999999999999996432 223688999999999999886 578899
Q ss_pred CceeEEEeCCEEEEEecCCCCCc--ccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCc
Q 008089 192 DSHTCSSWKNKIIVIGGEDGHDY--YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDD 269 (578)
Q Consensus 192 ~~h~~~~~~~~lyV~GG~~~~~~--~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~d 269 (578)
..|++++++++|||+||.+.... .++.+++||+++++|+.+.. ++.+|..++++.++++|||+||.... ...++
T Consensus 429 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~ 504 (534)
T PHA03098 429 YGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS---LNFPRINASLCIFNNKIYVVGGDKYE-YYINE 504 (534)
T ss_pred cCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC---CCcccccceEEEECCEEEEEcCCcCC-cccce
Confidence 99999999999999999764432 35679999999999999976 77889999999999999999998753 34688
Q ss_pred EEEEECCCCcEEEEEe
Q 008089 270 LYMIDVDSGLWTKVIT 285 (578)
Q Consensus 270 v~~ydi~t~~W~~l~~ 285 (578)
+++||+++++|+.+..
T Consensus 505 v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 505 IEVYDDKTNTWTLFCK 520 (534)
T ss_pred eEEEeCCCCEEEecCC
Confidence 9999999999998865
No 19
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=6.5e-31 Score=292.63 Aligned_cols=266 Identities=15% Similarity=0.213 Sum_probs=215.8
Q ss_pred EEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCC-CCCcEEEEECCCCeEE
Q 008089 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMN-PLRDLHILDTSSHTWI 123 (578)
Q Consensus 45 ~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~-~~~~v~~yD~~t~~W~ 123 (578)
.+++.||... ....+..|+..+++|..+. ..| .+..|++++++++||++||.+... ..+++++||+.+++|.
T Consensus 252 ~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (534)
T PHA03098 252 IIYIHITMSI---FTYNYITNYSPLSEINTII---DIH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN 324 (534)
T ss_pred ceEeecccch---hhceeeecchhhhhccccc---Ccc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeee
Confidence 4556566541 2344667888888898754 333 245678999999999999987644 5679999999999998
Q ss_pred ecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEE
Q 008089 124 SPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKI 203 (578)
Q Consensus 124 ~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~l 203 (578)
.++ ++|.+|.+|+++.++++||++||.. .....+++++||+.+++|+.++ ++|.+|..|+++.++++|
T Consensus 325 ~~~---~~~~~R~~~~~~~~~~~lyv~GG~~------~~~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~i 392 (534)
T PHA03098 325 KVP---ELIYPRKNPGVTVFNNRIYVIGGIY------NSISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNLI 392 (534)
T ss_pred ECC---CCCcccccceEEEECCEEEEEeCCC------CCEecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCEE
Confidence 865 6888999999999999999999964 2345789999999999999886 578899999999999999
Q ss_pred EEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCC--ccCcEEEEECCCCcEE
Q 008089 204 IVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQN--LYDDLYMIDVDSGLWT 281 (578)
Q Consensus 204 yV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~--~~~dv~~ydi~t~~W~ 281 (578)
||+||.......++++++||+.+++|+.+.. +|.+|.+|+++.++++|||+||...... .++.+++||+.+++|+
T Consensus 393 Yv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 393 YVIGGISKNDELLKTVECFSLNTNKWSKGSP---LPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred EEECCcCCCCcccceEEEEeCCCCeeeecCC---CCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 9999976555567899999999999999876 8889999999999999999999864332 3577999999999999
Q ss_pred EEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEecccccceeccc
Q 008089 282 KVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEK 340 (578)
Q Consensus 282 ~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~~~~~~~~~l~~ 340 (578)
.+..+ |.+|..++++.+ +++|||+||.+.. ...++++.++.....|..+..
T Consensus 470 ~~~~~---~~~r~~~~~~~~----~~~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 470 ELSSL---NFPRINASLCIF----NNKIYVVGGDKYE-YYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred eCCCC---CcccccceEEEE----CCEEEEEcCCcCC-cccceeEEEeCCCCEEEecCC
Confidence 98654 556776665443 8899999999754 346789999988888765543
No 20
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=8.1e-32 Score=272.39 Aligned_cols=254 Identities=29% Similarity=0.522 Sum_probs=214.5
Q ss_pred CCCCCCcceeEEEE--CCEEEEEccc--CCCC--CCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEEC-CEEEEEcc
Q 008089 80 SPPTPRDSHSCTTV--GENLYVFGGT--DGMN--PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG-KRLFIFGG 152 (578)
Q Consensus 80 ~~P~~R~~hs~~~~--~~kIYv~GG~--~~~~--~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~lyvfGG 152 (578)
++|+||.+.++++. .+.|+||||- ++.. .+|++|.||+.+++|+++.. .+.|.||.+|.++++. +.+|||||
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~s-pn~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVS-PNAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEecc-CCCcCCCccceeEEeccCeEEEecc
Confidence 57899999999887 4579999994 5443 57999999999999999874 4679999999999886 89999999
Q ss_pred CCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCC---CcccCceEEEECCCCce
Q 008089 153 CGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGH---DYYLSDVHILDTDTLTW 229 (578)
Q Consensus 153 ~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~---~~~~~di~~yD~~t~~W 229 (578)
--.+.+...-.-+.|+|+||+.+++|+++...| .|++|.+|-|+++.++|++|||.... -.|+||+|+||+++.+|
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW 219 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKW 219 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceee
Confidence 654433333334789999999999999998765 79999999999999999999997433 35899999999999999
Q ss_pred EEecCCCCCCCCCceeEEEEe-CCEEEEEcCccC--------CCCccCcEEEEECCC-----CcEEEEEeCCCCCCCcee
Q 008089 230 KELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTD--------SQNLYDDLYMIDVDS-----GLWTKVITTGEGPSARFS 295 (578)
Q Consensus 230 ~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~--------~~~~~~dv~~ydi~t-----~~W~~l~~~~~~P~~r~~ 295 (578)
.++.+.|.-|.||++|++++. .+.|||+||++. .+...+|+|.++++. -.|.++.+.+..|.+|.+
T Consensus 220 ~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsg 299 (521)
T KOG1230|consen 220 SKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSG 299 (521)
T ss_pred eeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCc
Confidence 999999989999999999988 899999999974 234678999999999 589999999999999998
Q ss_pred eeEeeeeccCCCEEEEEccccC--------CCCccCcEEEEecccccceec
Q 008089 296 VAGDCLDPLKGGVLVFIGGCNK--------SLEALDDMYYLYTGLVNERKL 338 (578)
Q Consensus 296 ~~~~~~~~~~~~~l~v~GG~~~--------~~~~~~d~~~l~~~~~~~~~l 338 (578)
++..+. .+++-++|||... ....+||+|.++....+|.+.
T Consensus 300 fsv~va---~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 300 FSVAVA---KNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred eeEEEe---cCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 875543 5778999999754 134589999999998888765
No 21
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.98 E-value=2e-30 Score=270.78 Aligned_cols=228 Identities=18% Similarity=0.263 Sum_probs=180.8
Q ss_pred CCCCCCCcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEE-EeeecCCCCCCCcceeEEEECCEEEEEcccC
Q 008089 26 SSGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWS-QPVIKGSPPTPRDSHSCTTVGENLYVFGGTD 104 (578)
Q Consensus 26 g~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~-~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~ 104 (578)
..+|.+|..|+++++ +++||++||.+... ..+++++||+.+++|. .....+++|.+|.+|++++++++||++||..
T Consensus 57 ~~lp~~r~~~~~~~~--~~~lyviGG~~~~~-~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~ 133 (323)
T TIGR03548 57 GQLPYEAAYGASVSV--ENGIYYIGGSNSSE-RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNR 133 (323)
T ss_pred ccCCccccceEEEEE--CCEEEEEcCCCCCC-CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcC
Confidence 367889988888888 56899999986543 5688999999999983 2223568999999999999999999999986
Q ss_pred CCCCCCcEEEEECCCCeEEecccCCCCC-CCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEecc
Q 008089 105 GMNPLRDLHILDTSSHTWISPSVRGEGP-EAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATT 183 (578)
Q Consensus 105 ~~~~~~~v~~yD~~t~~W~~l~~~g~~P-~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~ 183 (578)
....++++++||+.+++|+.++ ++| .+|..|+++.++++||||||.... ...++++||+.+++|+.+..
T Consensus 134 ~~~~~~~v~~yd~~~~~W~~~~---~~p~~~r~~~~~~~~~~~iYv~GG~~~~-------~~~~~~~yd~~~~~W~~~~~ 203 (323)
T TIGR03548 134 NGKPSNKSYLFNLETQEWFELP---DFPGEPRVQPVCVKLQNELYVFGGGSNI-------AYTDGYKYSPKKNQWQKVAD 203 (323)
T ss_pred CCccCceEEEEcCCCCCeeECC---CCCCCCCCcceEEEECCEEEEEcCCCCc-------cccceEEEecCCCeeEECCC
Confidence 6667899999999999999876 455 479999999999999999996321 23578999999999999975
Q ss_pred CC--CCCCCCCceeEE-EeCCEEEEEecCCCCC-------------------------------cccCceEEEECCCCce
Q 008089 184 SG--NPPSARDSHTCS-SWKNKIIVIGGEDGHD-------------------------------YYLSDVHILDTDTLTW 229 (578)
Q Consensus 184 ~g--~~p~~R~~h~~~-~~~~~lyV~GG~~~~~-------------------------------~~~~di~~yD~~t~~W 229 (578)
.. ..|..+..++.+ +.+++|||+||.+... .+.+++++||+.+++|
T Consensus 204 ~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 283 (323)
T TIGR03548 204 PTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKW 283 (323)
T ss_pred CCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCee
Confidence 42 234444445444 4479999999986421 1236799999999999
Q ss_pred EEecCCCCCC-CCCceeEEEEeCCEEEEEcCccCCCCccCc
Q 008089 230 KELNTSGMVL-SPRAGHSTVAFGKNLFVFGGFTDSQNLYDD 269 (578)
Q Consensus 230 ~~v~~~g~~p-~~R~~hs~v~~~~~iyV~GG~~~~~~~~~d 269 (578)
+.+.. +| .+|.+++++.++++||++||........++
T Consensus 284 ~~~~~---~p~~~r~~~~~~~~~~~iyv~GG~~~pg~rt~~ 321 (323)
T TIGR03548 284 KSIGN---SPFFARCGAALLLTGNNIFSINGELKPGVRTPD 321 (323)
T ss_pred eEccc---ccccccCchheEEECCEEEEEeccccCCcCCcC
Confidence 99975 55 589999999999999999998665444433
No 22
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=1.9e-29 Score=265.89 Aligned_cols=230 Identities=20% Similarity=0.312 Sum_probs=179.3
Q ss_pred CCC-CCCcceEEEEEcCCCEEEEEcCCCCCC-----CCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEE-EECCEEEE
Q 008089 27 SGP-GKRWGHTCNAIKGGRFLYVFGGYGKDN-----CQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCT-TVGENLYV 99 (578)
Q Consensus 27 ~~P-~~R~ghs~v~v~~g~~Iyv~GG~~~~~-----~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~-~~~~kIYv 99 (578)
.+| .+|.+|+++++ +++||++||+.... ..++++++||+.+++|+.+. ..+|.+|.+|+++ +++++||+
T Consensus 48 ~~p~~~R~~~~~~~~--~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~--~~~p~~~~~~~~~~~~~g~IYv 123 (346)
T TIGR03547 48 DFPGGPRNQAVAAAI--DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLD--TRSPVGLLGASGFSLHNGQAYF 123 (346)
T ss_pred CCCCCCcccceEEEE--CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCC--CCCCCcccceeEEEEeCCEEEE
Confidence 456 48999998888 56899999985432 24678999999999999975 2457778888777 68999999
Q ss_pred EcccCCCC----------------------------------CCCcEEEEECCCCeEEecccCCCCCC-CCcccEEEEEC
Q 008089 100 FGGTDGMN----------------------------------PLRDLHILDTSSHTWISPSVRGEGPE-AREGHSAALVG 144 (578)
Q Consensus 100 ~GG~~~~~----------------------------------~~~~v~~yD~~t~~W~~l~~~g~~P~-~R~~hs~~~~~ 144 (578)
+||.++.. .++++++||+.+++|+.+. ++|. +|.+|+++.++
T Consensus 124 iGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~ 200 (346)
T TIGR03547 124 TGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKG 200 (346)
T ss_pred EcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEEC
Confidence 99986421 2478999999999999875 6675 68999999999
Q ss_pred CEEEEEccCCCCCCCCCceeeceEEEEE--cCcceEEEeccCCCCCCCC-------CceeEEEeCCEEEEEecCCCCC--
Q 008089 145 KRLFIFGGCGKSSNTNDEVYYNDLYILN--TETFVWKRATTSGNPPSAR-------DSHTCSSWKNKIIVIGGEDGHD-- 213 (578)
Q Consensus 145 ~~lyvfGG~~~~~~~~~~~~~ndv~~yd--~~t~~W~~~~~~g~~p~~R-------~~h~~~~~~~~lyV~GG~~~~~-- 213 (578)
++|||+||..... ....+++.|+ +.+++|..+.. +|.+| ..|++++++++|||+||.+...
T Consensus 201 ~~iyv~GG~~~~~-----~~~~~~~~y~~~~~~~~W~~~~~---m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~ 272 (346)
T TIGR03547 201 NKLLLINGEIKPG-----LRTAEVKQYLFTGGKLEWNKLPP---LPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQ 272 (346)
T ss_pred CEEEEEeeeeCCC-----ccchheEEEEecCCCceeeecCC---CCCCCCCccccccEEeeeEECCEEEEeecCCCCCch
Confidence 9999999964221 1234455554 57789999874 34333 4566788999999999975321
Q ss_pred --------------cccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEE
Q 008089 214 --------------YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMID 274 (578)
Q Consensus 214 --------------~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~yd 274 (578)
.....+++||+++++|+.+.. +|.+|..++++.++++|||+||.+.....+++++.|.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~---lp~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 273 ENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGK---LPQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred hhhhcCCccccCCCCceeEeeEEEecCCcccccCC---CCCCceeeEEEEcCCEEEEEeccCCCCCEeeeEEEEE
Confidence 012358899999999999976 8889999999999999999999987777788888764
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=3e-29 Score=267.20 Aligned_cols=235 Identities=20% Similarity=0.327 Sum_probs=182.3
Q ss_pred CCCcceEEEEEcCCCEEEEEcCCCCC-----CCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEE-ECCEEEEEccc
Q 008089 30 GKRWGHTCNAIKGGRFLYVFGGYGKD-----NCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGT 103 (578)
Q Consensus 30 ~~R~ghs~v~v~~g~~Iyv~GG~~~~-----~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~kIYv~GG~ 103 (578)
.+|.+|+++++ +++|||+||+... ...++++|+||+.+++|..+.. ..|.+|.+|++++ .+++||++||.
T Consensus 73 ~~r~~~~~v~~--~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 73 GPREQAVAAFI--DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGV 148 (376)
T ss_pred CCcccceEEEE--CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCC
Confidence 48999988888 5689999998641 1236789999999999999752 3467788888877 79999999997
Q ss_pred CCC----------------------------------CCCCcEEEEECCCCeEEecccCCCCCC-CCcccEEEEECCEEE
Q 008089 104 DGM----------------------------------NPLRDLHILDTSSHTWISPSVRGEGPE-AREGHSAALVGKRLF 148 (578)
Q Consensus 104 ~~~----------------------------------~~~~~v~~yD~~t~~W~~l~~~g~~P~-~R~~hs~~~~~~~ly 148 (578)
+.. ...+++++||+.+++|+.+. ++|. +|.+|+++.++++||
T Consensus 149 ~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~iY 225 (376)
T PRK14131 149 NKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNKLW 225 (376)
T ss_pred CHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEECCEEE
Confidence 531 12478999999999998865 5675 788999999999999
Q ss_pred EEccCCCCCCCCCceeeceEE--EEEcCcceEEEeccCCCCCCCCC--------ceeEEEeCCEEEEEecCCCCCc----
Q 008089 149 IFGGCGKSSNTNDEVYYNDLY--ILNTETFVWKRATTSGNPPSARD--------SHTCSSWKNKIIVIGGEDGHDY---- 214 (578)
Q Consensus 149 vfGG~~~~~~~~~~~~~ndv~--~yd~~t~~W~~~~~~g~~p~~R~--------~h~~~~~~~~lyV~GG~~~~~~---- 214 (578)
|+||..... ....+++ .||+++++|..+.. +|.+|. .+.+++++++|||+||.+....
T Consensus 226 v~GG~~~~~-----~~~~~~~~~~~~~~~~~W~~~~~---~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~ 297 (376)
T PRK14131 226 LINGEIKPG-----LRTDAVKQGKFTGNNLKWQKLPD---LPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENY 297 (376)
T ss_pred EEeeeECCC-----cCChhheEEEecCCCcceeecCC---CCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhh
Confidence 999963321 1223444 55778999999873 444442 2335678999999999763210
Q ss_pred -----c-------cCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEE
Q 008089 215 -----Y-------LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (578)
Q Consensus 215 -----~-------~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~ 282 (578)
+ ...+++||+++++|+.+.. +|.+|.+++++.++++|||+||........+++++|+++.+.|..
T Consensus 298 ~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~---lp~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 298 QNGKLYAHEGLKKSWSDEIYALVNGKWQKVGE---LPQGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred hcCCcccccCCcceeehheEEecCCcccccCc---CCCCccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 0 1246789999999998875 899999999999999999999987666678999999999887764
No 24
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=3.9e-29 Score=274.21 Aligned_cols=207 Identities=15% Similarity=0.326 Sum_probs=181.2
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeE
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W 122 (578)
++.||++||.+... ..+.+++||+.+++|..++ ++|.+|..+++++++++||++||.++. +.+++||+.+++|
T Consensus 271 ~~~lyviGG~~~~~-~~~~v~~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~~iYviGG~~~~---~sve~ydp~~n~W 343 (480)
T PHA02790 271 GEVVYLIGGWMNNE-IHNNAIAVNYISNNWIPIP---PMNSPRLYASGVPANNKLYVVGGLPNP---TSVERWFHGDAAW 343 (480)
T ss_pred CCEEEEEcCCCCCC-cCCeEEEEECCCCEEEECC---CCCchhhcceEEEECCEEEEECCcCCC---CceEEEECCCCeE
Confidence 55899999986533 5678999999999999965 889999999999999999999998543 5699999999999
Q ss_pred EecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCE
Q 008089 123 ISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNK 202 (578)
Q Consensus 123 ~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~ 202 (578)
..++ ++|.+|.+|++++++++||++||.... .+.+++||+.+++|+.++ +++.+|..|++++++++
T Consensus 344 ~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~--------~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 344 VNMP---SLLKPRCNPAVASINNVIYVIGGHSET--------DTTTEYLLPNHDQWQFGP---STYYPHYKSCALVFGRR 409 (480)
T ss_pred EECC---CCCCCCcccEEEEECCEEEEecCcCCC--------CccEEEEeCCCCEEEeCC---CCCCccccceEEEECCE
Confidence 9876 789999999999999999999996311 256889999999999986 57889999999999999
Q ss_pred EEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEE
Q 008089 203 IIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (578)
Q Consensus 203 lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~ 282 (578)
|||+||. +.+||+++++|+.+.. ++.+|..+++++++++|||+||.+.. ...+.+++||+++++|+.
T Consensus 410 IYv~GG~---------~e~ydp~~~~W~~~~~---m~~~r~~~~~~v~~~~IYviGG~~~~-~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 410 LFLVGRN---------AEFYCESSNTWTLIDD---PIYPRDNPELIIVDNKLLLIGGFYRG-SYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred EEEECCc---------eEEecCCCCcEeEcCC---CCCCccccEEEEECCEEEEECCcCCC-cccceEEEEECCCCeEEe
Confidence 9999983 5789999999999986 88899999999999999999998643 346789999999999986
Q ss_pred E
Q 008089 283 V 283 (578)
Q Consensus 283 l 283 (578)
.
T Consensus 477 ~ 477 (480)
T PHA02790 477 W 477 (480)
T ss_pred c
Confidence 4
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=5.2e-28 Score=249.36 Aligned_cols=258 Identities=28% Similarity=0.541 Sum_probs=214.9
Q ss_pred CCcEEEee-ecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEE
Q 008089 69 NQTWSQPV-IKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRL 147 (578)
Q Consensus 69 t~~W~~l~-~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~l 147 (578)
--.|+++. ..|+.|.+|.+|-++++..-|.||||-++ +-.+++++||..+++|....+.|+.|.+...|+.+..+.+|
T Consensus 16 ~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNE-GiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtri 94 (830)
T KOG4152|consen 16 VVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNE-GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRI 94 (830)
T ss_pred ccceEEEecccCCCCCccccchheeeeeeEEEecCCcc-cchhhhhhhccccceeecchhcCCCCCchhhcceEecCceE
Confidence 34698765 47889999999999999999999999643 45689999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCceeeceEEEEEcCcceEEEec----cCCCCCCCCCceeEEEeCCEEEEEecCCCC--------Ccc
Q 008089 148 FIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT----TSGNPPSARDSHTCSSWKNKIIVIGGEDGH--------DYY 215 (578)
Q Consensus 148 yvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~----~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~--------~~~ 215 (578)
|+|||... ...|.||+|.+-..--.|+++. ..|.+|.+|-+|+.+.++++.|+|||..+. -.|
T Consensus 95 lvFGGMvE-----YGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrY 169 (830)
T KOG4152|consen 95 LVFGGMVE-----YGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRY 169 (830)
T ss_pred EEEccEee-----eccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchh
Confidence 99999743 3458899988888888898875 457889999999999999999999996432 247
Q ss_pred cCceEEEECCC----CceEEecCCCCCCCCCceeEEEEe------CCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEe
Q 008089 216 LSDVHILDTDT----LTWKELNTSGMVLSPRAGHSTVAF------GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 216 ~~di~~yD~~t----~~W~~v~~~g~~p~~R~~hs~v~~------~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~ 285 (578)
+||+|++++.- -.|......|..|.+|..|+++++ ..+||||||.++ -.+.|+|.+|+++..|.+...
T Consensus 170 LnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G--~RLgDLW~Ldl~Tl~W~kp~~ 247 (830)
T KOG4152|consen 170 LNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG--CRLGDLWTLDLDTLTWNKPSL 247 (830)
T ss_pred hcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc--ccccceeEEecceeecccccc
Confidence 99999999863 359999999999999999999988 236999999875 358999999999999999999
Q ss_pred CCCCCCCceeeeEeeeeccCCCEEEEEccccCC-------------CCccCcEEEEecccccceec
Q 008089 286 TGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS-------------LEALDDMYYLYTGLVNERKL 338 (578)
Q Consensus 286 ~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~-------------~~~~~d~~~l~~~~~~~~~l 338 (578)
.|..|.+|.-|++..+ ++++|||||.-.. .+..+.+=+++++.+.|..+
T Consensus 248 ~G~~PlPRSLHsa~~I----GnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl 309 (830)
T KOG4152|consen 248 SGVAPLPRSLHSATTI----GNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETL 309 (830)
T ss_pred cCCCCCCcccccceee----cceeEEecceeeeeccccccccccceeeeccceeeeeecchheeee
Confidence 9999999999998765 8999999997421 12233344556666666554
No 26
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=2e-26 Score=252.83 Aligned_cols=211 Identities=19% Similarity=0.235 Sum_probs=179.5
Q ss_pred EEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEE
Q 008089 90 CTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLY 169 (578)
Q Consensus 90 ~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~ 169 (578)
++..++.||++||.++....+.+++||+.+++|..++ +++.+|..++++.++++||++||... .+.++
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~~iYviGG~~~---------~~sve 334 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIP---PMNSPRLYASGVPANNKLYVVGGLPN---------PTSVE 334 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECC---CCCchhhcceEEEECCEEEEECCcCC---------CCceE
Confidence 3458999999999977777889999999999999876 78899999999999999999999531 15689
Q ss_pred EEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEE
Q 008089 170 ILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA 249 (578)
Q Consensus 170 ~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~ 249 (578)
+||+.+++|..++ ++|.+|..|++++++++|||+||.... .+.+++||+++++|+.+.+ ++.+|.+|++++
T Consensus 335 ~ydp~~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~---m~~~r~~~~~~~ 405 (480)
T PHA02790 335 RWFHGDAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPS---TYYPHYKSCALV 405 (480)
T ss_pred EEECCCCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCC---CCCccccceEEE
Confidence 9999999999887 678899999999999999999997643 3678999999999999877 889999999999
Q ss_pred eCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEe
Q 008089 250 FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLY 329 (578)
Q Consensus 250 ~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~ 329 (578)
++++|||+||. +.+||+++++|+.+.++ |.+|..+.++++ +++|||+||.+.. ..++.+..++
T Consensus 406 ~~~~IYv~GG~---------~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~----~~~IYviGG~~~~-~~~~~ve~Yd 468 (480)
T PHA02790 406 FGRRLFLVGRN---------AEFYCESSNTWTLIDDP---IYPRDNPELIIV----DNKLLLIGGFYRG-SYIDTIEVYN 468 (480)
T ss_pred ECCEEEEECCc---------eEEecCCCCcEeEcCCC---CCCccccEEEEE----CCEEEEECCcCCC-cccceEEEEE
Confidence 99999999984 57899999999998764 567777765544 8899999998743 3457788888
Q ss_pred cccccceec
Q 008089 330 TGLVNERKL 338 (578)
Q Consensus 330 ~~~~~~~~l 338 (578)
....+|..+
T Consensus 469 ~~~~~W~~~ 477 (480)
T PHA02790 469 NRTYSWNIW 477 (480)
T ss_pred CCCCeEEec
Confidence 887777543
No 27
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.79 E-value=2.6e-20 Score=192.66 Aligned_cols=314 Identities=20% Similarity=0.312 Sum_probs=220.1
Q ss_pred ChhhhhhhhcccccccC----CCCCCCcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCC
Q 008089 10 SPQALVAQQLVSSEISS----SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPR 85 (578)
Q Consensus 10 ~~~~~~~~~~~~~~~~g----~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R 85 (578)
.++-++|++....+..+ ..|..|.||.+|.....++||++||++.-. ...|+|.|+...+.|..+...+..|-.|
T Consensus 235 ~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~W~~iN~~t~~PG~R 313 (723)
T KOG2437|consen 235 QEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ-DLADFWAYSVKENQWTCINRDTEGPGAR 313 (723)
T ss_pred ccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch-hHHHHHhhcCCcceeEEeecCCCCCcch
Confidence 34555666555555333 479999999999998888999999998765 6789999999999999998777799999
Q ss_pred cceeEEEECC--EEEEEcccCCC------CCCCcEEEEECCCCeEEecccCC---CCCCCCcccEEEEECCE--EEEEcc
Q 008089 86 DSHSCTTVGE--NLYVFGGTDGM------NPLRDLHILDTSSHTWISPSVRG---EGPEAREGHSAALVGKR--LFIFGG 152 (578)
Q Consensus 86 ~~hs~~~~~~--kIYv~GG~~~~------~~~~~v~~yD~~t~~W~~l~~~g---~~P~~R~~hs~~~~~~~--lyvfGG 152 (578)
.+|-++.... |+|+.|-+-+. ....|+|+||..++.|..+.... ..|...+.|.|++.+++ +|||||
T Consensus 314 sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGG 393 (723)
T KOG2437|consen 314 SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGG 393 (723)
T ss_pred hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecC
Confidence 9999999866 89999987433 23479999999999998775432 36889999999999987 999999
Q ss_pred CCCCCCCCCceeeceEEEEEcCcceEEEeccC-------CCCCCCCCceeEEEe--CCEEEEEecCCCCCcccCceEEEE
Q 008089 153 CGKSSNTNDEVYYNDLYILNTETFVWKRATTS-------GNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILD 223 (578)
Q Consensus 153 ~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~-------g~~p~~R~~h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD 223 (578)
+.- ..++..+..+|.||.....|+.+... -.-...|.+|+|-.+ ++++|+|||..... -++-+..||
T Consensus 394 r~~---~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~-El~L~f~y~ 469 (723)
T KOG2437|consen 394 RIL---TCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKT-ELNLFFSYD 469 (723)
T ss_pred eec---cCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccce-EEeehhcce
Confidence 742 23345578899999999999876421 112345778887665 67899999976553 344456666
Q ss_pred CCCCceEEecC-----CCCCCCCCceeEEEEe---CCEEEEEcCccCC-----CCccCcEEEEECCCCcEEEEEeC----
Q 008089 224 TDTLTWKELNT-----SGMVLSPRAGHSTVAF---GKNLFVFGGFTDS-----QNLYDDLYMIDVDSGLWTKVITT---- 286 (578)
Q Consensus 224 ~~t~~W~~v~~-----~g~~p~~R~~hs~v~~---~~~iyV~GG~~~~-----~~~~~dv~~ydi~t~~W~~l~~~---- 286 (578)
+....-..+.. ....|.+ ....-+.. ...|.+.-|.... ....+.+|+|++.++.|..+...
T Consensus 470 I~~E~~~~~s~~~k~dsS~~pS~-~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~I~~~~ 548 (723)
T KOG2437|consen 470 IDSEHVDIISDGTKKDSSMVPST-GFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYKIDQAA 548 (723)
T ss_pred eccccchhhhccCcCccccCCCc-chhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhhhHHhh
Confidence 54433332221 0111111 11111122 3457777776532 23578899999999999876211
Q ss_pred -----------------CCCCCCceeeeEeeeeccCCCEEEEEccccCCC----CccCcEEEEecc
Q 008089 287 -----------------GEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSL----EALDDMYYLYTG 331 (578)
Q Consensus 287 -----------------~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~----~~~~d~~~l~~~ 331 (578)
-..+.+|+.|+-+ .......+|++||..... ..++|.|.+...
T Consensus 549 ~d~dtvfsvpFp~ks~~~~~~~~rf~h~~~--~dL~~~~~yl~Ggn~~~~~~~~m~l~dfW~l~I~ 612 (723)
T KOG2437|consen 549 KDNDTVFSVPFPTKSLQEEEPCPRFAHQLV--YDLLHKVHYLFGGNPGKSCSPKMRLDDFWSLKIC 612 (723)
T ss_pred ccCCceeeccCCcccccceeccccchhHHH--HHHhhhhhhhhcCCCCCCCCchhhhhhHHHHhhc
Confidence 0247778777633 234567789999986543 236788877655
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.75 E-value=1.2e-16 Score=161.05 Aligned_cols=280 Identities=21% Similarity=0.308 Sum_probs=203.1
Q ss_pred CCCCCCcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCC--CcEEEeeecCCCC-CCCcceeEEEECCEEEEEccc
Q 008089 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVN--QTWSQPVIKGSPP-TPRDSHSCTTVGENLYVFGGT 103 (578)
Q Consensus 27 ~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t--~~W~~l~~~g~~P-~~R~~hs~~~~~~kIYv~GG~ 103 (578)
+.|.+--+-+...+ ++.+||-=|... ...|.+|+.. ..|+++. ..| .+|.+..+++++++||+|||.
T Consensus 32 dlPvg~KnG~Ga~i--g~~~YVGLGs~G-----~afy~ldL~~~~k~W~~~a---~FpG~~rnqa~~a~~~~kLyvFgG~ 101 (381)
T COG3055 32 DLPVGFKNGAGALI--GDTVYVGLGSAG-----TAFYVLDLKKPGKGWTKIA---DFPGGARNQAVAAVIGGKLYVFGGY 101 (381)
T ss_pred CCCcccccccccee--cceEEEEeccCC-----ccceehhhhcCCCCceEcc---cCCCcccccchheeeCCeEEEeecc
Confidence 45655555566666 457888656322 4588999874 5899965 444 579999999999999999998
Q ss_pred CCCC-----CCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECC-EEEEEccCCCCCCC------------------
Q 008089 104 DGMN-----PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNT------------------ 159 (578)
Q Consensus 104 ~~~~-----~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-~lyvfGG~~~~~~~------------------ 159 (578)
.... .++++|+||+.+++|.++.+. .|....+++++.+++ +||++||+.+....
T Consensus 102 Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~--sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~ 179 (381)
T COG3055 102 GKSVSSSPQVFNDAYRYDPSTNSWHKLDTR--SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDK 179 (381)
T ss_pred ccCCCCCceEeeeeEEecCCCChhheeccc--cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHH
Confidence 5433 469999999999999998753 566788999999987 89999997533111
Q ss_pred ----------CCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECC--CC
Q 008089 160 ----------NDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTD--TL 227 (578)
Q Consensus 160 ----------~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~--t~ 227 (578)
.+..+...+..|++.++.|+.+.. .+-.++.+.+++.-+|++.++-|.-....+...++.++.. ..
T Consensus 180 i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~--~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~ 257 (381)
T COG3055 180 IIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE--NPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNL 257 (381)
T ss_pred HHHHHhCCCHHHhcccccccccccccchhhhcCc--CcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCce
Confidence 122345678999999999998753 3455677767666788899999987666667778887764 66
Q ss_pred ceEEecCCC----CCCCCCceeEEEEeCCEEEEEcCccCC------------------CCccCcEEEEECCCCcEEEEEe
Q 008089 228 TWKELNTSG----MVLSPRAGHSTVAFGKNLFVFGGFTDS------------------QNLYDDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 228 ~W~~v~~~g----~~p~~R~~hs~v~~~~~iyV~GG~~~~------------------~~~~~dv~~ydi~t~~W~~l~~ 285 (578)
+|..+.... ...+...++-.-..++.++|.||.+-. ..+.++||.|| .+.|+.+..
T Consensus 258 ~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~Ge 335 (381)
T COG3055 258 KWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGE 335 (381)
T ss_pred eeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecc
Confidence 799986621 111334444445667889999996521 13568899999 899999866
Q ss_pred CCCCCCCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEe
Q 008089 286 TGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLY 329 (578)
Q Consensus 286 ~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~ 329 (578)
.+. +...-++. ..++.||++||.+........++.+.
T Consensus 336 Lp~---~l~YG~s~----~~nn~vl~IGGE~~~Gka~~~v~~l~ 372 (381)
T COG3055 336 LPQ---GLAYGVSL----SYNNKVLLIGGETSGGKATTRVYSLS 372 (381)
T ss_pred cCC---CccceEEE----ecCCcEEEEccccCCCeeeeeEEEEE
Confidence 543 33222211 35889999999999999999998775
No 29
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.64 E-value=2.1e-14 Score=144.98 Aligned_cols=232 Identities=20% Similarity=0.340 Sum_probs=167.3
Q ss_pred CCcceEEEEEcCCCEEEEEcCCCCCCC----CcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECC-EEEEEcccCC
Q 008089 31 KRWGHTCNAIKGGRFLYVFGGYGKDNC----QTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGE-NLYVFGGTDG 105 (578)
Q Consensus 31 ~R~ghs~v~v~~g~~Iyv~GG~~~~~~----~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-kIYv~GG~~~ 105 (578)
+|-+..++++ +.+||+|||.+.... ..+++|+||+.+++|.++.. ..|....+++++.+++ +||++||.+.
T Consensus 82 ~rnqa~~a~~--~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~ 157 (381)
T COG3055 82 ARNQAVAAVI--GGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQ 157 (381)
T ss_pred ccccchheee--CCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccH
Confidence 6767777666 558999999966543 46899999999999999874 4566688999999988 8999999732
Q ss_pred C----------------------------------CCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEc
Q 008089 106 M----------------------------------NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFG 151 (578)
Q Consensus 106 ~----------------------------------~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfG 151 (578)
. .....++.|++.++.|+.+-. .+-.++++.+.+.-++++.++-
T Consensus 158 ~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~--~pf~~~aGsa~~~~~n~~~lIn 235 (381)
T COG3055 158 NIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE--NPFYGNAGSAVVIKGNKLTLIN 235 (381)
T ss_pred HhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCc--CcccCccCcceeecCCeEEEEc
Confidence 1 114679999999999976531 3446677766666678899999
Q ss_pred cCCCCCCCCCceeeceEEEEEc--CcceEEEeccCCCCC----CCCCceeEEEeCCEEEEEecCCC--------------
Q 008089 152 GCGKSSNTNDEVYYNDLYILNT--ETFVWKRATTSGNPP----SARDSHTCSSWKNKIIVIGGEDG-------------- 211 (578)
Q Consensus 152 G~~~~~~~~~~~~~ndv~~yd~--~t~~W~~~~~~g~~p----~~R~~h~~~~~~~~lyV~GG~~~-------------- 211 (578)
|.-+.+.. +..+++++. ...+|..+.....++ ....++-.-..++.++|.||.+-
T Consensus 236 GEiKpGLR-----t~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~A 310 (381)
T COG3055 236 GEIKPGLR-----TAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYA 310 (381)
T ss_pred ceecCCcc-----ccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhccccc
Confidence 97555433 334445554 467899986432211 11112222234788999998641
Q ss_pred ----CCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCC
Q 008089 212 ----HDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (578)
Q Consensus 212 ----~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~ 278 (578)
...+.++||.|| .+.|+.+.. +|.++.+..++..++++|++||.++.+.....++.+-...+
T Consensus 311 H~Gl~K~w~~~Vy~~d--~g~Wk~~Ge---Lp~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l~~~gk 376 (381)
T COG3055 311 HEGLSKSWNSEVYIFD--NGSWKIVGE---LPQGLAYGVSLSYNNKVLLIGGETSGGKATTRVYSLSWDGK 376 (381)
T ss_pred ccchhhhhhceEEEEc--CCceeeecc---cCCCccceEEEecCCcEEEEccccCCCeeeeeEEEEEEcCc
Confidence 112467899999 889998865 99999999999999999999999988877777776655443
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.60 E-value=9e-16 Score=159.29 Aligned_cols=271 Identities=21% Similarity=0.316 Sum_probs=193.7
Q ss_pred CCcEEEeeecC-------CCCCCCcceeEEEECC--EEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccE
Q 008089 69 NQTWSQPVIKG-------SPPTPRDSHSCTTVGE--NLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHS 139 (578)
Q Consensus 69 t~~W~~l~~~g-------~~P~~R~~hs~~~~~~--kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs 139 (578)
+..|.++.... .-|..|.+|.++...+ -||++||++|...+.|+|.|+...+.|+.....+..|..|..|-
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR 317 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHR 317 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhh
Confidence 45687765433 3578899999998855 79999999999999999999999999999887778999999999
Q ss_pred EEEECC--EEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCC---CCCCCCCceeEEEeCCE--EEEEecCCC-
Q 008089 140 AALVGK--RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG---NPPSARDSHTCSSWKNK--IIVIGGEDG- 211 (578)
Q Consensus 140 ~~~~~~--~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g---~~p~~R~~h~~~~~~~~--lyV~GG~~~- 211 (578)
|+.... +||+.|-+-.++..+......|+|+||..++.|.-++... ..|...+.|.|++.+.+ +|||||..-
T Consensus 318 MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~ 397 (723)
T KOG2437|consen 318 MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILT 397 (723)
T ss_pred hhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeecc
Confidence 998865 8999999876665555567889999999999999886321 34778899999999877 999999743
Q ss_pred -CCcccCceEEEECCCCceEEecCCC-------CCCCCCceeEEEEe--CCEEEEEcCccCCCCccCcEEEEECCCCcEE
Q 008089 212 -HDYYLSDVHILDTDTLTWKELNTSG-------MVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (578)
Q Consensus 212 -~~~~~~di~~yD~~t~~W~~v~~~g-------~~p~~R~~hs~v~~--~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~ 281 (578)
+...+..++.||.....|..+...- .....|.+|++-.+ +..+|++||..... .++-...|++....=.
T Consensus 398 ~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~-El~L~f~y~I~~E~~~ 476 (723)
T KOG2437|consen 398 CNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKT-ELNLFFSYDIDSEHVD 476 (723)
T ss_pred CCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccce-EEeehhcceeccccch
Confidence 2235678999999999999875421 11235778876444 56799999986543 2444556666554332
Q ss_pred EEE-----eCCCCCCCceeeeEeeeeccCCCEEEEEccccCC-----CCccCcEEEEecccccceecccch
Q 008089 282 KVI-----TTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS-----LEALDDMYYLYTGLVNERKLEKLS 342 (578)
Q Consensus 282 ~l~-----~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~-----~~~~~d~~~l~~~~~~~~~l~~ls 342 (578)
.+. .....|++.+... .+.++....|.+.-|.... ....+..|.++.....|..+.++.
T Consensus 477 ~~s~~~k~dsS~~pS~~f~qR--s~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~I~ 545 (723)
T KOG2437|consen 477 IISDGTKKDSSMVPSTGFTQR--ATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYKID 545 (723)
T ss_pred hhhccCcCccccCCCcchhhh--cccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhhhH
Confidence 222 1112233332222 1233456667776666432 234678899988877775554433
No 31
>PF13964 Kelch_6: Kelch motif
Probab=98.97 E-value=1.5e-09 Score=81.12 Aligned_cols=49 Identities=37% Similarity=0.622 Sum_probs=44.9
Q ss_pred CCcceeEEEECCEEEEEcccCC-CCCCCcEEEEECCCCeEEecccCCCCCCCC
Q 008089 84 PRDSHSCTTVGENLYVFGGTDG-MNPLRDLHILDTSSHTWISPSVRGEGPEAR 135 (578)
Q Consensus 84 ~R~~hs~~~~~~kIYv~GG~~~-~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R 135 (578)
||.+|++++++++|||+||... ...++++++||+.+++|++++ ++|.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 6899999999999999999988 678899999999999999986 778776
No 32
>PLN02772 guanylate kinase
Probab=98.91 E-value=7e-09 Score=109.02 Aligned_cols=89 Identities=27% Similarity=0.540 Sum_probs=76.7
Q ss_pred CCCCCCcceeEEEECCEEEEEcccCCCC-CCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEEC-CEEEEEccCCCCC
Q 008089 80 SPPTPRDSHSCTTVGENLYVFGGTDGMN-PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG-KRLFIFGGCGKSS 157 (578)
Q Consensus 80 ~~P~~R~~hs~~~~~~kIYv~GG~~~~~-~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~lyvfGG~~~~~ 157 (578)
--+.++.+|+++.+++++|||||.++.. ..+.+|+||..+++|..+.+.|..|.+|.+|++|+++ ++|+|+++....
T Consensus 20 ~~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~- 98 (398)
T PLN02772 20 FGVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP- 98 (398)
T ss_pred ccCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC-
Confidence 3456899999999999999999998765 7799999999999999999999999999999999995 799999885322
Q ss_pred CCCCceeeceEEEEEcCcc
Q 008089 158 NTNDEVYYNDLYILNTETF 176 (578)
Q Consensus 158 ~~~~~~~~ndv~~yd~~t~ 176 (578)
..++|.+.+.|.
T Consensus 99 -------~~~~w~l~~~t~ 110 (398)
T PLN02772 99 -------DDSIWFLEVDTP 110 (398)
T ss_pred -------ccceEEEEcCCH
Confidence 367888877763
No 33
>PLN02772 guanylate kinase
Probab=98.88 E-value=1.1e-08 Score=107.62 Aligned_cols=91 Identities=21% Similarity=0.403 Sum_probs=77.7
Q ss_pred cCCCCCCCcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEccc
Q 008089 25 SSSGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGT 103 (578)
Q Consensus 25 ~g~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~ 103 (578)
.|-.+.+|.+|+++++ +.++|||||.+......+.+|+||+.+++|..+.+.|..|.+|.+|+++.+ +++|+|+++.
T Consensus 18 ~~~~~~~~~~~tav~i--gdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 18 NGFGVKPKNRETSVTI--GDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKG 95 (398)
T ss_pred cCccCCCCCcceeEEE--CCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCC
Confidence 3456779999999999 668999999877554678999999999999999999999999999999999 6799999875
Q ss_pred CCCCCCCcEEEEECCC
Q 008089 104 DGMNPLRDLHILDTSS 119 (578)
Q Consensus 104 ~~~~~~~~v~~yD~~t 119 (578)
.+. -+++|.+.+.|
T Consensus 96 ~~~--~~~~w~l~~~t 109 (398)
T PLN02772 96 SAP--DDSIWFLEVDT 109 (398)
T ss_pred CCC--ccceEEEEcCC
Confidence 443 36788887766
No 34
>PF13964 Kelch_6: Kelch motif
Probab=98.88 E-value=4.7e-09 Score=78.47 Aligned_cols=50 Identities=36% Similarity=0.569 Sum_probs=45.4
Q ss_pred CCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCC
Q 008089 190 ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPR 242 (578)
Q Consensus 190 ~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R 242 (578)
+|..|++++++++||||||.......++++++||+++++|+.+.+ +|.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~---mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPP---MPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCC---CCCCC
Confidence 589999999999999999998856689999999999999999986 77776
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.79 E-value=1.2e-08 Score=75.86 Aligned_cols=47 Identities=43% Similarity=0.875 Sum_probs=42.1
Q ss_pred CCEEEEEcccC--CCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE
Q 008089 94 GENLYVFGGTD--GMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV 143 (578)
Q Consensus 94 ~~kIYv~GG~~--~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~ 143 (578)
+++||||||.+ ....++++|+||+.+++|+++ +++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 57899999998 566889999999999999987 589999999999874
No 36
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.73 E-value=2.8e-08 Score=73.93 Aligned_cols=48 Identities=44% Similarity=0.857 Sum_probs=41.9
Q ss_pred CCEEEEEcCCC-CCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE
Q 008089 43 GRFLYVFGGYG-KDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV 93 (578)
Q Consensus 43 g~~Iyv~GG~~-~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~ 93 (578)
|++||||||++ ......+++|+||+.+++|+++ +++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 45799999998 4456789999999999999996 689999999999874
No 37
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.65 E-value=3.3e-06 Score=83.60 Aligned_cols=163 Identities=18% Similarity=0.237 Sum_probs=100.7
Q ss_pred EEEEcccCCCCC-CCcEEEEECCCCe--------EEecccCCCCCCCCcccEEEEEC----CEEEEEccCCCCC------
Q 008089 97 LYVFGGTDGMNP-LRDLHILDTSSHT--------WISPSVRGEGPEAREGHSAALVG----KRLFIFGGCGKSS------ 157 (578)
Q Consensus 97 IYv~GG~~~~~~-~~~v~~yD~~t~~--------W~~l~~~g~~P~~R~~hs~~~~~----~~lyvfGG~~~~~------ 157 (578)
.+|.||++.++. ...+|++.+.+.. +......|+.|.+|++|++.++- ....+|||+..-.
T Consensus 41 YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTT 120 (337)
T PF03089_consen 41 YLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTT 120 (337)
T ss_pred EEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccch
Confidence 677799887654 4678888765432 34445678999999999998873 2478899974221
Q ss_pred --CCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCC-CcccCceEEEECCCC---ceEE
Q 008089 158 --NTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGH-DYYLSDVHILDTDTL---TWKE 231 (578)
Q Consensus 158 --~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~-~~~~~di~~yD~~t~---~W~~ 231 (578)
.+.--.....|+.+|++-.....-. ...+..+..+|.+..-++.+|++||..-. +.....++.+..+-- -+-.
T Consensus 121 enWNsVvDC~P~VfLiDleFGC~tah~-lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~vs 199 (337)
T PF03089_consen 121 ENWNSVVDCPPQVFLIDLEFGCCTAHT-LPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAVS 199 (337)
T ss_pred hhcceeccCCCeEEEEecccccccccc-chhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCceeE
Confidence 1111223456788888877665442 22455677788888889999999997532 223445665543211 0111
Q ss_pred ecCCCCCCCCCceeEEEEe---CCEEEEEcCccCC
Q 008089 232 LNTSGMVLSPRAGHSTVAF---GKNLFVFGGFTDS 263 (578)
Q Consensus 232 v~~~g~~p~~R~~hs~v~~---~~~iyV~GG~~~~ 263 (578)
... +.....-.++++. .++.+|+||+...
T Consensus 200 C~v---l~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 200 CTV---LQGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred EEE---CCCCceEeeeeEeecCCCceEEEeccccc
Confidence 111 2334444444433 3679999999754
No 38
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.65 E-value=7.6e-08 Score=71.61 Aligned_cols=44 Identities=34% Similarity=0.685 Sum_probs=39.4
Q ss_pred CCcceeEEEECCEEEEEccc---CCCCCCCcEEEEECCCCeEEeccc
Q 008089 84 PRDSHSCTTVGENLYVFGGT---DGMNPLRDLHILDTSSHTWISPSV 127 (578)
Q Consensus 84 ~R~~hs~~~~~~kIYv~GG~---~~~~~~~~v~~yD~~t~~W~~l~~ 127 (578)
||.+|++++++++||||||. +.....+++++||+.+++|+.++.
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 68999999999999999999 445578999999999999998763
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.64 E-value=6.2e-08 Score=72.07 Aligned_cols=46 Identities=30% Similarity=0.771 Sum_probs=41.0
Q ss_pred CCceeEEEEeCCEEEEEcCc--cCCCCccCcEEEEECCCCcEEEEEeC
Q 008089 241 PRAGHSTVAFGKNLFVFGGF--TDSQNLYDDLYMIDVDSGLWTKVITT 286 (578)
Q Consensus 241 ~R~~hs~v~~~~~iyV~GG~--~~~~~~~~dv~~ydi~t~~W~~l~~~ 286 (578)
||.+|++++++++||||||+ .......+++++||+++++|+.+.++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 68999999999999999999 44456789999999999999998765
No 40
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.61 E-value=7.4e-08 Score=70.77 Aligned_cols=46 Identities=24% Similarity=0.661 Sum_probs=42.4
Q ss_pred CCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeC
Q 008089 241 PRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITT 286 (578)
Q Consensus 241 ~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~ 286 (578)
||.+|+++.++++|||+||.......++++++||+.+++|+.+.++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 6899999999999999999998777899999999999999999875
No 41
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.61 E-value=4.7e-08 Score=72.60 Aligned_cols=45 Identities=36% Similarity=0.823 Sum_probs=31.3
Q ss_pred CCceeEEEEe-CCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEe
Q 008089 241 PRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 241 ~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~ 285 (578)
||.+|+++.+ +++||||||.......++++|+||+++++|+++..
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPS 46 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--S
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCC
Confidence 6999999998 48999999998877789999999999999999944
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.56 E-value=7.1e-08 Score=71.65 Aligned_cols=45 Identities=38% Similarity=0.596 Sum_probs=31.3
Q ss_pred CCCceeEEEe-CCEEEEEecCCCCCcccCceEEEECCCCceEEecC
Q 008089 190 ARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT 234 (578)
Q Consensus 190 ~R~~h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~ 234 (578)
+|.+|+++.. +++||||||.+.....++++|+||+++++|+++..
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPS 46 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--S
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCC
Confidence 6899999998 59999999998877799999999999999999954
No 43
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.56 E-value=1.1e-05 Score=79.92 Aligned_cols=179 Identities=18% Similarity=0.238 Sum_probs=111.6
Q ss_pred CCCCCcccEEEEEC---C---EEEEEccCCCCCCCCCceeeceEEEEEcCcce--------EEEeccCCCCCCCCCceeE
Q 008089 131 GPEAREGHSAALVG---K---RLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--------WKRATTSGNPPSARDSHTC 196 (578)
Q Consensus 131 ~P~~R~~hs~~~~~---~---~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~--------W~~~~~~g~~p~~R~~h~~ 196 (578)
+|..|+-+.+...+ + ..+|.||. ..+......+|++.+.+.. ..+-.-.|..|.+|++|++
T Consensus 19 LPPLR~PAv~~~~~~~~~~~~~YlIHGGr-----TPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~ 93 (337)
T PF03089_consen 19 LPPLRCPAVCHLSDPSDGEPEQYLIHGGR-----TPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTI 93 (337)
T ss_pred CCCCCCccEeeecCCCCCCeeeEEecCCc-----CCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceE
Confidence 55555544443312 1 35666886 3445567888888776433 2333455789999999999
Q ss_pred EEe----CCEEEEEecCCCC----------C---cccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcC
Q 008089 197 SSW----KNKIIVIGGEDGH----------D---YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGG 259 (578)
Q Consensus 197 ~~~----~~~lyV~GG~~~~----------~---~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG 259 (578)
.++ +...++|||+... + .....++.+|++-+..+.... ..+......|.+..-+|.+|++||
T Consensus 94 ~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l-pEl~dG~SFHvslar~D~VYilGG 172 (337)
T PF03089_consen 94 NVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL-PELQDGQSFHVSLARNDCVYILGG 172 (337)
T ss_pred EEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc-hhhcCCeEEEEEEecCceEEEEcc
Confidence 876 2347889997421 0 123458888988887776543 234567888999999999999999
Q ss_pred ccCCCC-ccCcEEEEECCCC---cEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCCC
Q 008089 260 FTDSQN-LYDDLYMIDVDSG---LWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSL 319 (578)
Q Consensus 260 ~~~~~~-~~~dv~~ydi~t~---~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~ 319 (578)
..-..+ ....++++..+-- -+..... -....+.++++++.......+|+||+....
T Consensus 173 Hsl~sd~Rpp~l~rlkVdLllGSP~vsC~v----l~~glSisSAIvt~~~~~e~iIlGGY~sds 232 (337)
T PF03089_consen 173 HSLESDSRPPRLYRLKVDLLLGSPAVSCTV----LQGGLSISSAIVTQTGPHEYIILGGYQSDS 232 (337)
T ss_pred EEccCCCCCCcEEEEEEeecCCCceeEEEE----CCCCceEeeeeEeecCCCceEEEecccccc
Confidence 863322 2445666543321 1222222 123344555555556668899999997553
No 44
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.52 E-value=1.3e-07 Score=69.41 Aligned_cols=45 Identities=40% Similarity=0.623 Sum_probs=41.1
Q ss_pred CCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecC
Q 008089 190 ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT 234 (578)
Q Consensus 190 ~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~ 234 (578)
+|..|++++++++|||+||.+.....++++++||+++++|+.+..
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 588999999999999999998866789999999999999999875
No 45
>PF13854 Kelch_5: Kelch motif
Probab=98.45 E-value=3.5e-07 Score=65.73 Aligned_cols=40 Identities=45% Similarity=0.768 Sum_probs=35.7
Q ss_pred CCCCCcceeEEEECCEEEEEcccCC--CCCCCcEEEEECCCC
Q 008089 81 PPTPRDSHSCTTVGENLYVFGGTDG--MNPLRDLHILDTSSH 120 (578)
Q Consensus 81 ~P~~R~~hs~~~~~~kIYv~GG~~~--~~~~~~v~~yD~~t~ 120 (578)
+|.+|.+|+++.++++||||||.+. ...++++|+||+.++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4889999999999999999999984 567899999998763
No 46
>PF13854 Kelch_5: Kelch motif
Probab=98.44 E-value=4.5e-07 Score=65.15 Aligned_cols=41 Identities=41% Similarity=0.875 Sum_probs=36.7
Q ss_pred CCCCCceeEEEEeCCEEEEEcCccC-CCCccCcEEEEECCCC
Q 008089 238 VLSPRAGHSTVAFGKNLFVFGGFTD-SQNLYDDLYMIDVDSG 278 (578)
Q Consensus 238 ~p~~R~~hs~v~~~~~iyV~GG~~~-~~~~~~dv~~ydi~t~ 278 (578)
.|.+|.+|+++.++++||||||... ....++|+|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4789999999999999999999984 6778999999999863
No 47
>smart00612 Kelch Kelch domain.
Probab=98.29 E-value=1.1e-06 Score=63.96 Aligned_cols=47 Identities=30% Similarity=0.674 Sum_probs=41.2
Q ss_pred EEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECC
Q 008089 96 NLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK 145 (578)
Q Consensus 96 kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~ 145 (578)
+||++||.++...++++++||+.+++|+.++ ++|.+|..|+++.+++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 4899999977677899999999999998866 7899999999988764
No 48
>smart00612 Kelch Kelch domain.
Probab=98.10 E-value=4.7e-06 Score=60.52 Aligned_cols=47 Identities=36% Similarity=0.663 Sum_probs=40.3
Q ss_pred EEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCC
Q 008089 202 KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGK 252 (578)
Q Consensus 202 ~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~ 252 (578)
+|||+||.... ..++++++||+.+++|+.+.. ++.+|..|+++.+++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPS---MPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCC---CCCccccceEEEeCC
Confidence 48999998753 468899999999999999886 889999999887754
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.92 E-value=0.00053 Score=68.44 Aligned_cols=153 Identities=16% Similarity=0.203 Sum_probs=93.8
Q ss_pred cEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCc----ceEEEeccCCC
Q 008089 111 DLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET----FVWKRATTSGN 186 (578)
Q Consensus 111 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t----~~W~~~~~~g~ 186 (578)
.-..||+.+++++.+.+..+.-+ ...+..-++++++.||.... ...+..|++.+ ..|.+... .
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FC---Sgg~~L~dG~ll~tGG~~~G--------~~~ir~~~p~~~~~~~~w~e~~~--~ 113 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFC---SGGAFLPDGRLLQTGGDNDG--------NKAIRIFTPCTSDGTCDWTESPN--D 113 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcc---cCcCCCCCCCEEEeCCCCcc--------ccceEEEecCCCCCCCCceECcc--c
Confidence 35679999999998765433221 12233447899999996431 23455677654 67887653 3
Q ss_pred CCCCCCceeEEEe-CCEEEEEecCCCCCcccCceEEEECCC-----CceEEecCCC-CCCCCCceeEEEEeCCEEEEEcC
Q 008089 187 PPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDT-----LTWKELNTSG-MVLSPRAGHSTVAFGKNLFVFGG 259 (578)
Q Consensus 187 ~p~~R~~h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~~t-----~~W~~v~~~g-~~p~~R~~hs~v~~~~~iyV~GG 259 (578)
+..+|...++..+ +++++|+||..... .+.+.... ..|..+.... ..+...+=+..+.-+++||+++.
T Consensus 114 m~~~RWYpT~~~L~DG~vlIvGG~~~~t-----~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an 188 (243)
T PF07250_consen 114 MQSGRWYPTATTLPDGRVLIVGGSNNPT-----YEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN 188 (243)
T ss_pred ccCCCccccceECCCCCEEEEeCcCCCc-----ccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc
Confidence 7888998888776 89999999987322 22222211 1222222111 12222333444555789999998
Q ss_pred ccCCCCccCcEEEEECCCCcE-EEEEeCCCC
Q 008089 260 FTDSQNLYDDLYMIDVDSGLW-TKVITTGEG 289 (578)
Q Consensus 260 ~~~~~~~~~dv~~ydi~t~~W-~~l~~~~~~ 289 (578)
.. -.+||..++++ +.++..+..
T Consensus 189 ~~--------s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 189 RG--------SIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred CC--------cEEEeCCCCeEEeeCCCCCCC
Confidence 53 57899999976 566655443
No 50
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.90 E-value=0.0032 Score=62.42 Aligned_cols=197 Identities=12% Similarity=0.152 Sum_probs=111.8
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCC---Ccce-eEEEECC-----EEEEEcccCCCCCCCcEEEEECCCCeEEecccCCC
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTP---RDSH-SCTTVGE-----NLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGE 130 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~---R~~h-s~~~~~~-----kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~ 130 (578)
..++++||.|++|..++. ++.+ ...+ ....++. ||..+...........+++|+..++.|+.+...
T Consensus 14 ~~~~V~NP~T~~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~-- 88 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECS-- 88 (230)
T ss_pred CcEEEECCCCCCEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccC--
Confidence 468999999999999762 2221 1111 1111222 455554332222335789999999999987622
Q ss_pred CCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEE-eccCCCCCCCC----CceeEEEeCCEEEE
Q 008089 131 GPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR-ATTSGNPPSAR----DSHTCSSWKNKIIV 205 (578)
Q Consensus 131 ~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~-~~~~g~~p~~R----~~h~~~~~~~~lyV 205 (578)
.+........+.+++.||.+.-.... . ....+..||+.+.+|.. ++ +|..+ .....+.++++|.+
T Consensus 89 ~~~~~~~~~~v~~~G~lyw~~~~~~~----~--~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L~~ 158 (230)
T TIGR01640 89 PPHHPLKSRGVCINGVLYYLAYTLKT----N--PDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKLAV 158 (230)
T ss_pred CCCccccCCeEEECCEEEEEEEECCC----C--CcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEEEE
Confidence 12111222367789999988753210 1 11268999999999995 54 23222 13345667888888
Q ss_pred EecCCCCCcccCceEEEE-CCCCceEEecCCCCCCCCCc----eeEEEEeCCEEEEEcCccCCCCccC-cEEEEECCCC
Q 008089 206 IGGEDGHDYYLSDVHILD-TDTLTWKELNTSGMVLSPRA----GHSTVAFGKNLFVFGGFTDSQNLYD-DLYMIDVDSG 278 (578)
Q Consensus 206 ~GG~~~~~~~~~di~~yD-~~t~~W~~v~~~g~~p~~R~----~hs~v~~~~~iyV~GG~~~~~~~~~-dv~~ydi~t~ 278 (578)
+....... .-+||+++ -....|++.-.-...+.+.. ....+..+++|++.... ... -+..||+.++
T Consensus 159 v~~~~~~~--~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-----~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 159 LKQKKDTN--NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-----ENPFYIFYYNVGEN 230 (230)
T ss_pred EEecCCCC--cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-----CCceEEEEEeccCC
Confidence 76543221 13688875 44667998654221112211 12345567787776652 111 2788888764
No 51
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.58 E-value=0.0023 Score=63.95 Aligned_cols=147 Identities=14% Similarity=0.178 Sum_probs=91.7
Q ss_pred cEEEEEcCCCcEEEeeecCCCCCCCcceeEEE-ECCEEEEEcccCCCCCCCcEEEEECCC----CeEEecccCCCCCCCC
Q 008089 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRDLHILDTSS----HTWISPSVRGEGPEAR 135 (578)
Q Consensus 61 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~kIYv~GG~~~~~~~~~v~~yD~~t----~~W~~l~~~g~~P~~R 135 (578)
....||+.+++++.+.+. .--.+.+.+. -++++++.||..+. ...+-.|++.+ ..|.... ..+-.+|
T Consensus 47 ~s~~yD~~tn~~rpl~v~----td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~--~~m~~~R 118 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQ----TDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESP--NDMQSGR 118 (243)
T ss_pred EEEEEecCCCcEEeccCC----CCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECc--ccccCCC
Confidence 456899999999986532 2222222222 37899999998542 34577788765 5787654 2488999
Q ss_pred cccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcC------cceEEEeccC-CCCCCCCCceeEEEeCCEEEEEe
Q 008089 136 EGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTE------TFVWKRATTS-GNPPSARDSHTCSSWKNKIIVIG 207 (578)
Q Consensus 136 ~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~------t~~W~~~~~~-g~~p~~R~~h~~~~~~~~lyV~G 207 (578)
++.+++.+ +++++|+||... ..+.|-+. ...|..+... ...+..-+-+....-+++||+|+
T Consensus 119 WYpT~~~L~DG~vlIvGG~~~-----------~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~a 187 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSNN-----------PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFA 187 (243)
T ss_pred ccccceECCCCCEEEEeCcCC-----------CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEE
Confidence 99999887 579999999531 11122222 1223222211 12233444455556699999998
Q ss_pred cCCCCCcccCceEEEECCCCce-EEecC
Q 008089 208 GEDGHDYYLSDVHILDTDTLTW-KELNT 234 (578)
Q Consensus 208 G~~~~~~~~~di~~yD~~t~~W-~~v~~ 234 (578)
.. +-.+||..++++ +.+..
T Consensus 188 n~--------~s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 188 NR--------GSIIYDYKTNTVVRTLPD 207 (243)
T ss_pred cC--------CcEEEeCCCCeEEeeCCC
Confidence 74 356789999977 55554
No 52
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.56 E-value=0.015 Score=57.57 Aligned_cols=163 Identities=12% Similarity=0.125 Sum_probs=93.0
Q ss_pred CcEEEEECCCCeEEecccCCCCCCCCccc-EEEEEC----C-EEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEecc
Q 008089 110 RDLHILDTSSHTWISPSVRGEGPEAREGH-SAALVG----K-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATT 183 (578)
Q Consensus 110 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~h-s~~~~~----~-~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~ 183 (578)
..++++||.|.+|..++...........+ ...-.+ . ++..+.... .......+++|+..+++|+.+..
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~------~~~~~~~~~Vys~~~~~Wr~~~~ 87 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS------GNRNQSEHQVYTLGSNSWRTIEC 87 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeec------CCCCCccEEEEEeCCCCcccccc
Confidence 46999999999999886321100001111 111111 1 344443311 00123468899999999999873
Q ss_pred CCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEE-ecCCCCCCCCC----ceeEEEEeCCEEEEEc
Q 008089 184 SGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE-LNTSGMVLSPR----AGHSTVAFGKNLFVFG 258 (578)
Q Consensus 184 ~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~-v~~~g~~p~~R----~~hs~v~~~~~iyV~G 258 (578)
. ++........+.+++.||-+.-..... ....|..||+.+.+|.. +.. |..+ .....+.++++|.++.
T Consensus 88 ~--~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~~----P~~~~~~~~~~~L~~~~G~L~~v~ 160 (230)
T TIGR01640 88 S--PPHHPLKSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIPL----PCGNSDSVDYLSLINYKGKLAVLK 160 (230)
T ss_pred C--CCCccccCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeeec----CccccccccceEEEEECCEEEEEE
Confidence 2 221111222667799998886433211 11269999999999995 543 3322 2345667788888776
Q ss_pred CccCCCCccCcEEEEE-CCCCcEEEEEeCC
Q 008089 259 GFTDSQNLYDDLYMID-VDSGLWTKVITTG 287 (578)
Q Consensus 259 G~~~~~~~~~dv~~yd-i~t~~W~~l~~~~ 287 (578)
...... .-+||+++ -....|+++-..+
T Consensus 161 ~~~~~~--~~~IWvl~d~~~~~W~k~~~i~ 188 (230)
T TIGR01640 161 QKKDTN--NFDLWVLNDAGKQEWSKLFTVP 188 (230)
T ss_pred ecCCCC--cEEEEEECCCCCCceeEEEEEc
Confidence 543211 24688886 4456799876554
No 53
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.17 E-value=0.21 Score=48.93 Aligned_cols=187 Identities=23% Similarity=0.319 Sum_probs=106.0
Q ss_pred CCCEEEEEcCCCCCCCCcccEEEEEcCCC--cEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCC
Q 008089 42 GGRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSS 119 (578)
Q Consensus 42 ~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t 119 (578)
++++||+..+ ...+++||..++ .|+.- ++. +.....+..++.+|+..+. +.++.+|..+
T Consensus 35 ~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~-----~~~-~~~~~~~~~~~~v~v~~~~------~~l~~~d~~t 95 (238)
T PF13360_consen 35 DGGRVYVASG-------DGNLYALDAKTGKVLWRFD-----LPG-PISGAPVVDGGRVYVGTSD------GSLYALDAKT 95 (238)
T ss_dssp ETTEEEEEET-------TSEEEEEETTTSEEEEEEE-----CSS-CGGSGEEEETTEEEEEETT------SEEEEEETTT
T ss_pred eCCEEEEEcC-------CCEEEEEECCCCCEEEEee-----ccc-cccceeeecccccccccce------eeeEecccCC
Confidence 3567888732 256999999876 47662 222 2222247778999888631 2799999777
Q ss_pred C--eEE-ecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcc--eEEEeccCCCCCC-----
Q 008089 120 H--TWI-SPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPS----- 189 (578)
Q Consensus 120 ~--~W~-~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~--~W~~~~~~g~~p~----- 189 (578)
. .|+ ..... +....+......+.++.+|+... ...++.+|+.+. .|+..........
T Consensus 96 G~~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 162 (238)
T PF13360_consen 96 GKVLWSIYLTSS-PPAGVRSSSSPAVDGDRLYVGTS------------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSF 162 (238)
T ss_dssp SCEEEEEEE-SS-CTCSTB--SEEEEETTEEEEEET------------CSEEEEEETTTTEEEEEEESSTT-SS--EEEE
T ss_pred cceeeeeccccc-cccccccccCceEecCEEEEEec------------cCcEEEEecCCCcEEEEeecCCCCCCcceeee
Confidence 5 487 33311 11112334445555777777653 356899998865 4766432111000
Q ss_pred CCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCc--eEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCcc
Q 008089 190 ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLY 267 (578)
Q Consensus 190 ~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~--W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~ 267 (578)
.......++.++.+|+..+... +..+|.+++. |+.. ..+ ........++.+|+.. . .
T Consensus 163 ~~~~~~~~~~~~~v~~~~~~g~-------~~~~d~~tg~~~w~~~-~~~------~~~~~~~~~~~l~~~~-~------~ 221 (238)
T PF13360_consen 163 SDINGSPVISDGRVYVSSGDGR-------VVAVDLATGEKLWSKP-ISG------IYSLPSVDGGTLYVTS-S------D 221 (238)
T ss_dssp TTEEEEEECCTTEEEEECCTSS-------EEEEETTTTEEEEEEC-SS-------ECECEECCCTEEEEEE-T------T
T ss_pred cccccceEEECCEEEEEcCCCe-------EEEEECCCCCEEEEec-CCC------ccCCceeeCCEEEEEe-C------C
Confidence 0112333444678888765331 5666998886 7443 211 1112445567777766 2 1
Q ss_pred CcEEEEECCCCc--EE
Q 008089 268 DDLYMIDVDSGL--WT 281 (578)
Q Consensus 268 ~dv~~ydi~t~~--W~ 281 (578)
..++++|+++++ |+
T Consensus 222 ~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 222 GRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TEEEEEETTTTEEEEE
T ss_pred CEEEEEECCCCCEEeE
Confidence 459999999984 64
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.07 E-value=0.33 Score=52.12 Aligned_cols=194 Identities=15% Similarity=0.220 Sum_probs=106.4
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCC--cEEEeeecC--CCC---CCCcceeEEEECCEEEEEcccCCCCCCCcEEEE
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKG--SPP---TPRDSHSCTTVGENLYVFGGTDGMNPLRDLHIL 115 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g--~~P---~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~y 115 (578)
+++||+.+.. ..++.||..++ .|+.-.... ... ..+...+.+..+++||+.+. + ..+++|
T Consensus 69 ~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-~-----g~l~al 135 (394)
T PRK11138 69 YNKVYAADRA-------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-K-----GQVYAL 135 (394)
T ss_pred CCEEEEECCC-------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-C-----CEEEEE
Confidence 4578886542 36899998765 587522110 000 11333345667889987542 1 369999
Q ss_pred ECCCC--eEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcce--EEEeccCCCCCCCC
Q 008089 116 DTSSH--TWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--WKRATTSGNPPSAR 191 (578)
Q Consensus 116 D~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~--W~~~~~~g~~p~~R 191 (578)
|..+. .|+... .+ . ...+-++.++.+|+..+ ...++.||+++.+ |+.-... +....+
T Consensus 136 d~~tG~~~W~~~~-~~----~-~~ssP~v~~~~v~v~~~------------~g~l~ald~~tG~~~W~~~~~~-~~~~~~ 196 (394)
T PRK11138 136 NAEDGEVAWQTKV-AG----E-ALSRPVVSDGLVLVHTS------------NGMLQALNESDGAVKWTVNLDV-PSLTLR 196 (394)
T ss_pred ECCCCCCcccccC-CC----c-eecCCEEECCEEEEECC------------CCEEEEEEccCCCEeeeecCCC-Cccccc
Confidence 98775 586522 11 1 12233456788887544 2458999998764 8764321 111112
Q ss_pred CceeEEEeCCEEEEEecCCCCCcccCceEEEECCCC--ceEEecCC--CCCCCC---CceeEEEEeCCEEEEEcCccCCC
Q 008089 192 DSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTL--TWKELNTS--GMVLSP---RAGHSTVAFGKNLFVFGGFTDSQ 264 (578)
Q Consensus 192 ~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~--~W~~v~~~--g~~p~~---R~~hs~v~~~~~iyV~GG~~~~~ 264 (578)
...+-++.++.+|+-.+ + ..++.+|+++. .|+.-... +..... ....+-++.++.+|+.+..
T Consensus 197 ~~~sP~v~~~~v~~~~~-~------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~---- 265 (394)
T PRK11138 197 GESAPATAFGGAIVGGD-N------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN---- 265 (394)
T ss_pred CCCCCEEECCEEEEEcC-C------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC----
Confidence 22233445666666332 2 34778888765 47643210 000000 1123345668888876531
Q ss_pred CccCcEEEEECCCC--cEEE
Q 008089 265 NLYDDLYMIDVDSG--LWTK 282 (578)
Q Consensus 265 ~~~~dv~~ydi~t~--~W~~ 282 (578)
..++.+|+.++ .|+.
T Consensus 266 ---g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 266 ---GNLVALDLRSGQIVWKR 282 (394)
T ss_pred ---CeEEEEECCCCCEEEee
Confidence 35899999987 4875
No 55
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.00 E-value=0.4 Score=46.95 Aligned_cols=179 Identities=21% Similarity=0.277 Sum_probs=101.7
Q ss_pred ccEEEEEcCCC--cEEEeeecCCCCCCCccee--EEEECCEEEEEcccCCCCCCCcEEEEECCCCe--EEecccCCCCCC
Q 008089 60 NQVHVFDTVNQ--TWSQPVIKGSPPTPRDSHS--CTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVRGEGPE 133 (578)
Q Consensus 60 ~~v~~yD~~t~--~W~~l~~~g~~P~~R~~hs--~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~ 133 (578)
..+..+|+.++ .|+.- +.....+.. .+..++++|+..+ ...+++||..+.+ |+... +.
T Consensus 3 g~l~~~d~~tG~~~W~~~-----~~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~-----~~ 66 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYD-----LGPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL-----PG 66 (238)
T ss_dssp SEEEEEETTTTEEEEEEE-----CSSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC-----SS
T ss_pred CEEEEEECCCCCEEEEEE-----CCCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec-----cc
Confidence 35788998766 47762 111122222 3347888998842 3579999998765 76522 11
Q ss_pred CCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcc--eEE-EeccCCCCCCCCCceeEEEeCCEEEEEecCC
Q 008089 134 AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWK-RATTSGNPPSARDSHTCSSWKNKIIVIGGED 210 (578)
Q Consensus 134 ~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~--~W~-~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~ 210 (578)
+ .....+..++.+|+..+ .+.++.+|..+. .|+ ........+ .+......+.++.+|+...
T Consensus 67 ~-~~~~~~~~~~~v~v~~~------------~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-- 130 (238)
T PF13360_consen 67 P-ISGAPVVDGGRVYVGTS------------DGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTS-- 130 (238)
T ss_dssp C-GGSGEEEETTEEEEEET------------TSEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEET--
T ss_pred c-ccceeeecccccccccc------------eeeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEec--
Confidence 1 22224777889988764 136889997654 688 343211111 2233344455777777643
Q ss_pred CCCcccCceEEEECCCCc--eEEecCCCCCCC-----CCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCc--EE
Q 008089 211 GHDYYLSDVHILDTDTLT--WKELNTSGMVLS-----PRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL--WT 281 (578)
Q Consensus 211 ~~~~~~~di~~yD~~t~~--W~~v~~~g~~p~-----~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~--W~ 281 (578)
...++.+|+++++ |..-...+.... .......+..++.+|+..+... +..+|..++. |+
T Consensus 131 -----~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-------~~~~d~~tg~~~w~ 198 (238)
T PF13360_consen 131 -----SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR-------VVAVDLATGEKLWS 198 (238)
T ss_dssp -----CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS-------EEEEETTTTEEEEE
T ss_pred -----cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe-------EEEEECCCCCEEEE
Confidence 3458999988764 666432111000 1112334445678888776431 6667999996 74
Q ss_pred E
Q 008089 282 K 282 (578)
Q Consensus 282 ~ 282 (578)
.
T Consensus 199 ~ 199 (238)
T PF13360_consen 199 K 199 (238)
T ss_dssp E
T ss_pred e
Confidence 3
No 56
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.92 E-value=0.54 Score=50.47 Aligned_cols=186 Identities=16% Similarity=0.233 Sum_probs=103.3
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCC--cEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCC
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH 120 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~ 120 (578)
++.||+.+. ...++.||..++ .|+... +.+ ...+-+..++.+|+..+. ..++.||..+.
T Consensus 120 ~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~-----~~~-~~ssP~v~~~~v~v~~~~------g~l~ald~~tG 180 (394)
T PRK11138 120 GGKVYIGSE-------KGQVYALNAEDGEVAWQTKV-----AGE-ALSRPVVSDGLVLVHTSN------GMLQALNESDG 180 (394)
T ss_pred CCEEEEEcC-------CCEEEEEECCCCCCcccccC-----CCc-eecCCEEECCEEEEECCC------CEEEEEEccCC
Confidence 446776332 246999998765 687622 111 122334567888875432 36999999876
Q ss_pred e--EEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcc--eEEEeccC--CCCCC---CC
Q 008089 121 T--WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTS--GNPPS---AR 191 (578)
Q Consensus 121 ~--W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~--~W~~~~~~--g~~p~---~R 191 (578)
+ |+... ..+....+...+-++.++.+|+-.+ ...++.+|+.+. .|+..... +.... ..
T Consensus 181 ~~~W~~~~-~~~~~~~~~~~sP~v~~~~v~~~~~------------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~ 247 (394)
T PRK11138 181 AVKWTVNL-DVPSLTLRGESAPATAFGGAIVGGD------------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVD 247 (394)
T ss_pred CEeeeecC-CCCcccccCCCCCEEECCEEEEEcC------------CCEEEEEEccCChhhheeccccCCCccchhcccc
Confidence 5 86532 1111111222233445677776444 235777888765 47643211 00000 01
Q ss_pred CceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCc--eEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCc
Q 008089 192 DSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDD 269 (578)
Q Consensus 192 ~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~--W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~d 269 (578)
...+-++.++.+|+.+. + ..++.+|+.+.+ |+.-.. .. ...+..++.||+.... ..
T Consensus 248 ~~~sP~v~~~~vy~~~~-~------g~l~ald~~tG~~~W~~~~~-----~~---~~~~~~~~~vy~~~~~-------g~ 305 (394)
T PRK11138 248 VDTTPVVVGGVVYALAY-N------GNLVALDLRSGQIVWKREYG-----SV---NDFAVDGGRIYLVDQN-------DR 305 (394)
T ss_pred cCCCcEEECCEEEEEEc-C------CeEEEEECCCCCEEEeecCC-----Cc---cCcEEECCEEEEEcCC-------Ce
Confidence 11233456888887642 1 358999998764 875321 11 1245678889887532 35
Q ss_pred EEEEECCCC--cEEE
Q 008089 270 LYMIDVDSG--LWTK 282 (578)
Q Consensus 270 v~~ydi~t~--~W~~ 282 (578)
++.+|++++ .|+.
T Consensus 306 l~ald~~tG~~~W~~ 320 (394)
T PRK11138 306 VYALDTRGGVELWSQ 320 (394)
T ss_pred EEEEECCCCcEEEcc
Confidence 999999877 4864
No 57
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.45 E-value=1.6 Score=46.36 Aligned_cols=188 Identities=17% Similarity=0.227 Sum_probs=99.4
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCC--cEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCC
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH 120 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~ 120 (578)
++.||+.+.. ..++.||..++ .|+.- .+. +...+.+..++++|+.+. + ..++.||..+.
T Consensus 65 ~~~v~v~~~~-------g~v~a~d~~tG~~~W~~~-----~~~-~~~~~p~v~~~~v~v~~~-~-----g~l~ald~~tG 125 (377)
T TIGR03300 65 GGKVYAADAD-------GTVVALDAETGKRLWRVD-----LDE-RLSGGVGADGGLVFVGTE-K-----GEVIALDAEDG 125 (377)
T ss_pred CCEEEEECCC-------CeEEEEEccCCcEeeeec-----CCC-CcccceEEcCCEEEEEcC-C-----CEEEEEECCCC
Confidence 4567765432 35999998765 58752 111 122234445777776542 2 36999998765
Q ss_pred --eEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcc--eEEEeccCCCCCCCCCceeE
Q 008089 121 --TWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTC 196 (578)
Q Consensus 121 --~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~--~W~~~~~~g~~p~~R~~h~~ 196 (578)
.|+... +.. ...+.++.++.+|+..+ ...++.+|+++. .|+.-... .....+...+.
T Consensus 126 ~~~W~~~~-----~~~-~~~~p~v~~~~v~v~~~------------~g~l~a~d~~tG~~~W~~~~~~-~~~~~~~~~sp 186 (377)
T TIGR03300 126 KELWRAKL-----SSE-VLSPPLVANGLVVVRTN------------DGRLTALDAATGERLWTYSRVT-PALTLRGSASP 186 (377)
T ss_pred cEeeeecc-----Cce-eecCCEEECCEEEEECC------------CCeEEEEEcCCCceeeEEccCC-CceeecCCCCC
Confidence 486522 111 12233445677777543 245889998765 47654321 11111222333
Q ss_pred EEeCCEEEEEecCCCCCcccCceEEEECCCC--ceEEecCC--CCCCCCC---ceeEEEEeCCEEEEEcCccCCCCccCc
Q 008089 197 SSWKNKIIVIGGEDGHDYYLSDVHILDTDTL--TWKELNTS--GMVLSPR---AGHSTVAFGKNLFVFGGFTDSQNLYDD 269 (578)
Q Consensus 197 ~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~--~W~~v~~~--g~~p~~R---~~hs~v~~~~~iyV~GG~~~~~~~~~d 269 (578)
++.++.+| +|..+ ..++.+|+++. .|+.-... +.....| ...+.++.++.+|+.... ..
T Consensus 187 ~~~~~~v~-~~~~~------g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~-------g~ 252 (377)
T TIGR03300 187 VIADGGVL-VGFAG------GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ-------GR 252 (377)
T ss_pred EEECCEEE-EECCC------CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC-------CE
Confidence 45566554 44322 24888998765 47643210 0000011 122344567777775431 34
Q ss_pred EEEEECCCC--cEEE
Q 008089 270 LYMIDVDSG--LWTK 282 (578)
Q Consensus 270 v~~ydi~t~--~W~~ 282 (578)
++.||++++ .|..
T Consensus 253 l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 253 VAALDLRSGRVLWKR 267 (377)
T ss_pred EEEEECCCCcEEEee
Confidence 899999876 4765
No 58
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.01 E-value=1.3 Score=46.71 Aligned_cols=128 Identities=15% Similarity=0.266 Sum_probs=78.0
Q ss_pred eEEEE-CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeece
Q 008089 89 SCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYND 167 (578)
Q Consensus 89 s~~~~-~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~nd 167 (578)
.++.+ +++|+..+.. ....+||+.+..-...+ .++.+...-.++.++++||++............... .
T Consensus 70 ~F~al~gskIv~~d~~------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~-~ 139 (342)
T PF07893_consen 70 DFFALHGSKIVAVDQS------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFP-C 139 (342)
T ss_pred EEEEecCCeEEEEcCC------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccce-e
Confidence 34444 8899998654 34899999998876544 355555566777889999999885332111111001 3
Q ss_pred EEEE--E--------cCcceEEEeccCCCCCCCCC-------ceeEEEe-CCEEEE-EecCCCCCcccCceEEEECCCCc
Q 008089 168 LYIL--N--------TETFVWKRATTSGNPPSARD-------SHTCSSW-KNKIIV-IGGEDGHDYYLSDVHILDTDTLT 228 (578)
Q Consensus 168 v~~y--d--------~~t~~W~~~~~~g~~p~~R~-------~h~~~~~-~~~lyV-~GG~~~~~~~~~di~~yD~~t~~ 228 (578)
++.+ + ...-.|+.++. +|..+. -.+.+++ +..|+| .-|.. .-.+.||+++.+
T Consensus 140 FE~l~~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~~~ 210 (342)
T PF07893_consen 140 FEALVYRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTESHE 210 (342)
T ss_pred EEEeccccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCCcc
Confidence 3333 3 22346777653 333332 2344455 667887 33321 238899999999
Q ss_pred eEEecCC
Q 008089 229 WKELNTS 235 (578)
Q Consensus 229 W~~v~~~ 235 (578)
|+++...
T Consensus 211 W~~~GdW 217 (342)
T PF07893_consen 211 WRKHGDW 217 (342)
T ss_pred eeeccce
Confidence 9999663
No 59
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.44 E-value=3.1 Score=43.93 Aligned_cols=122 Identities=22% Similarity=0.351 Sum_probs=75.1
Q ss_pred EEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCC-----
Q 008089 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLR----- 110 (578)
Q Consensus 36 s~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~----- 110 (578)
.++++ .+.+|+..+.. ..+.+||+.+..-... +.++.+...-.++.++++||++..........
T Consensus 70 ~F~al-~gskIv~~d~~-------~~t~vyDt~t~av~~~---P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~ 138 (342)
T PF07893_consen 70 DFFAL-HGSKIVAVDQS-------GRTLVYDTDTRAVATG---PRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFP 138 (342)
T ss_pred EEEEe-cCCeEEEEcCC-------CCeEEEECCCCeEecc---CCCCCCCcceEEEEeCCeEEEeeccCccccccCccce
Confidence 34444 45678888664 3488999998876643 34555666667778899999998763322111
Q ss_pred cEEEE--E--------CCCCeEEecccCCCCCCCCc-------ccEEEEE-CCEEEE-EccCCCCCCCCCceeeceEEEE
Q 008089 111 DLHIL--D--------TSSHTWISPSVRGEGPEARE-------GHSAALV-GKRLFI-FGGCGKSSNTNDEVYYNDLYIL 171 (578)
Q Consensus 111 ~v~~y--D--------~~t~~W~~l~~~g~~P~~R~-------~hs~~~~-~~~lyv-fGG~~~~~~~~~~~~~ndv~~y 171 (578)
.++.+ + .....|..++ ++|..+. -.+.+++ +..||| .-|. ....|.|
T Consensus 139 ~FE~l~~~~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~-----------~~GTysf 204 (342)
T PF07893_consen 139 CFEALVYRPPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGR-----------RWGTYSF 204 (342)
T ss_pred eEEEeccccccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCC-----------ceEEEEE
Confidence 44444 3 2234677765 2333322 2234445 567888 4331 0348899
Q ss_pred EcCcceEEEec
Q 008089 172 NTETFVWKRAT 182 (578)
Q Consensus 172 d~~t~~W~~~~ 182 (578)
|+.+.+|+++.
T Consensus 205 Dt~~~~W~~~G 215 (342)
T PF07893_consen 205 DTESHEWRKHG 215 (342)
T ss_pred EcCCcceeecc
Confidence 99999999985
No 60
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.03 E-value=6.6 Score=42.75 Aligned_cols=195 Identities=15% Similarity=0.098 Sum_probs=96.6
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccE
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHS 139 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs 139 (578)
..+|++|+.++....+. ..+..-......--+.+|++....++ ..++|++|+.+....++... +.. ....
T Consensus 226 ~~i~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~~---~~~-~~~~ 295 (435)
T PRK05137 226 PRVYLLDLETGQRELVG---NFPGMTFAPRFSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTDS---PAI-DTSP 295 (435)
T ss_pred CEEEEEECCCCcEEEee---cCCCcccCcEECCCCCEEEEEEecCC---CceEEEEECCCCceEEccCC---CCc-cCce
Confidence 57999999988877654 22211111111122345554433322 25799999998877665421 111 1112
Q ss_pred EEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCce
Q 008089 140 AALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDV 219 (578)
Q Consensus 140 ~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di 219 (578)
....+++.++|.... .. ...+|++|..+...+.+... ..+........+++.+++...... ...+
T Consensus 296 ~~spDG~~i~f~s~~-----~g---~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~~~~---~~~i 360 (435)
T PRK05137 296 SYSPDGSQIVFESDR-----SG---SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQGGG---QFSI 360 (435)
T ss_pred eEcCCCCEEEEEECC-----CC---CCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEcCCC---ceEE
Confidence 222344433343310 01 24689999988877777531 112222222235544444332222 1368
Q ss_pred EEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEE
Q 008089 220 HILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (578)
Q Consensus 220 ~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~ 284 (578)
+++|+.+...+.+.... ....-...-+++.+++-...........+|++|+....-+.+.
T Consensus 361 ~~~d~~~~~~~~lt~~~-----~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 361 GVMKPDGSGERILTSGF-----LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred EEEECCCCceEeccCCC-----CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 89998777666554311 1111223334454444332221111246999999887666554
No 61
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.52 E-value=0.5 Score=50.40 Aligned_cols=152 Identities=18% Similarity=0.223 Sum_probs=87.5
Q ss_pred CEEEEEcccCCCCCCCcEEEEECCCCeEE-ecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEc
Q 008089 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWI-SPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (578)
Q Consensus 95 ~kIYv~GG~~~~~~~~~v~~yD~~t~~W~-~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~ 173 (578)
-.+.+.+|.++. -.+|..|-.++.-. .+... ..| .........+....+++|+ ..-+|.||+
T Consensus 225 ~plllvaG~d~~---lrifqvDGk~N~~lqS~~l~-~fP--i~~a~f~p~G~~~i~~s~r-----------rky~ysyDl 287 (514)
T KOG2055|consen 225 APLLLVAGLDGT---LRIFQVDGKVNPKLQSIHLE-KFP--IQKAEFAPNGHSVIFTSGR-----------RKYLYSYDL 287 (514)
T ss_pred CceEEEecCCCc---EEEEEecCccChhheeeeec-cCc--cceeeecCCCceEEEeccc-----------ceEEEEeec
Confidence 358899998764 34666666665521 11100 112 1111111223337777773 345899999
Q ss_pred CcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCE
Q 008089 174 ETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKN 253 (578)
Q Consensus 174 ~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~ 253 (578)
.+.+-.++......+.+-...--+..++.++++-|..+. |+++...++.|.---. ++-.....+....+..
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~------I~lLhakT~eli~s~K---ieG~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH------IHLLHAKTKELITSFK---IEGVVSDFTFSSDSKE 358 (514)
T ss_pred cccccccccCCCCcccchhheeEecCCCCeEEEcccCce------EEeehhhhhhhhheee---eccEEeeEEEecCCcE
Confidence 999999887554444222222234456677777775433 7788888887753221 2222233333344567
Q ss_pred EEEEcCccCCCCccCcEEEEECCCCc
Q 008089 254 LFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 254 iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
|++.||+. .||+||+..+.
T Consensus 359 l~~~~~~G-------eV~v~nl~~~~ 377 (514)
T KOG2055|consen 359 LLASGGTG-------EVYVWNLRQNS 377 (514)
T ss_pred EEEEcCCc-------eEEEEecCCcc
Confidence 88888863 59999999984
No 62
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.50 E-value=1.5 Score=46.93 Aligned_cols=161 Identities=12% Similarity=0.066 Sum_probs=89.5
Q ss_pred ceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEE-eeecCCCCCCCcceeEEEECCE-EEEEcccCCCCCCCc
Q 008089 34 GHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQ-PVIKGSPPTPRDSHSCTTVGEN-LYVFGGTDGMNPLRD 111 (578)
Q Consensus 34 ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~-l~~~g~~P~~R~~hs~~~~~~k-IYv~GG~~~~~~~~~ 111 (578)
+-+++.+..+.-|++.+|++.. -.+|..|-.++.-.+ +-.. ..|. . .++..-+++ ..+++|+. .-
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~----lrifqvDGk~N~~lqS~~l~-~fPi--~-~a~f~p~G~~~i~~s~rr-----ky 281 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGT----LRIFQVDGKVNPKLQSIHLE-KFPI--Q-KAEFAPNGHSVIFTSGRR-----KY 281 (514)
T ss_pred CceEEEecCCCceEEEecCCCc----EEEEEecCccChhheeeeec-cCcc--c-eeeecCCCceEEEecccc-----eE
Confidence 4455556566679999998653 246777766665322 1111 1121 1 122222454 77777763 34
Q ss_pred EEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCC
Q 008089 112 LHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSAR 191 (578)
Q Consensus 112 v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R 191 (578)
+|.||+.+.+.+++......+.+-...-.+...+.++++-|. ..-++++...|+.|-.-- .++...
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~-----------~G~I~lLhakT~eli~s~---KieG~v 347 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN-----------NGHIHLLHAKTKELITSF---KIEGVV 347 (514)
T ss_pred EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc-----------CceEEeehhhhhhhhhee---eeccEE
Confidence 899999999988876443344222222223345556666662 244677777888774211 122222
Q ss_pred CceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCc
Q 008089 192 DSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT 228 (578)
Q Consensus 192 ~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~ 228 (578)
...+....+..||+.||. ..+|+||+..+.
T Consensus 348 ~~~~fsSdsk~l~~~~~~-------GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGT-------GEVYVWNLRQNS 377 (514)
T ss_pred eeEEEecCCcEEEEEcCC-------ceEEEEecCCcc
Confidence 233333335567777764 358999998763
No 63
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.08 E-value=3.7 Score=39.51 Aligned_cols=147 Identities=14% Similarity=0.134 Sum_probs=74.4
Q ss_pred CEEEEEcCCCCCCCCcccEEEEEcCCCcEE--Eeee-cCCCCCCCcceeEEEEC-CEEEEEcccCCCCCCCcEEEEECCC
Q 008089 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWS--QPVI-KGSPPTPRDSHSCTTVG-ENLYVFGGTDGMNPLRDLHILDTSS 119 (578)
Q Consensus 44 ~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~--~l~~-~g~~P~~R~~hs~~~~~-~kIYv~GG~~~~~~~~~v~~yD~~t 119 (578)
+.+|+|-| +.+|+++....... .+.. -+.+|. ....+..... +++|+|-| +..|+|+..+
T Consensus 17 g~~y~FkG--------~~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg-------~~yw~~~~~~ 80 (194)
T cd00094 17 GELYFFKG--------RYFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKG-------DKYWVYTGKN 80 (194)
T ss_pred CEEEEEeC--------CEEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECC-------CEEEEEcCcc
Confidence 57999977 35788886522111 1110 011222 1222222223 88999977 3688988765
Q ss_pred CeEEecccC--CCCCC--CCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEE-----eccCCCCCC
Q 008089 120 HTWISPSVR--GEGPE--AREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR-----ATTSGNPPS 189 (578)
Q Consensus 120 ~~W~~l~~~--g~~P~--~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~-----~~~~g~~p~ 189 (578)
..+..+... -..|. .....+.... ++++|+|-| +..|+||....+... +.. .-+..
T Consensus 81 ~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------------~~y~ry~~~~~~v~~~yP~~i~~-~w~g~ 146 (194)
T cd00094 81 LEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------------DKYWRYDEKTQKMDPGYPKLIET-DFPGV 146 (194)
T ss_pred cccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------------CEEEEEeCCCccccCCCCcchhh-cCCCc
Confidence 333211100 01121 1122233333 579999988 456788876554321 110 00112
Q ss_pred CCCceeEEEe-CCEEEEEecCCCCCcccCceEEEECCCCc
Q 008089 190 ARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLT 228 (578)
Q Consensus 190 ~R~~h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~~t~~ 228 (578)
+..-.++... ++++|+|-| +..++||..+++
T Consensus 147 p~~idaa~~~~~~~~yfF~g--------~~y~~~d~~~~~ 178 (194)
T cd00094 147 PDKVDAAFRWLDGYYYFFKG--------DQYWRFDPRSKE 178 (194)
T ss_pred CCCcceeEEeCCCcEEEEEC--------CEEEEEeCccce
Confidence 2222333334 488999976 348889987765
No 64
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=93.76 E-value=4.4 Score=39.03 Aligned_cols=152 Identities=17% Similarity=0.248 Sum_probs=76.4
Q ss_pred EEEECCEEEEEcccCCCCCCCcEEEEECCCCeE--EecccC-CCCCCCCcccEEEEEC-CEEEEEccCCCCCCCCCceee
Q 008089 90 CTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW--ISPSVR-GEGPEAREGHSAALVG-KRLFIFGGCGKSSNTNDEVYY 165 (578)
Q Consensus 90 ~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W--~~l~~~-g~~P~~R~~hs~~~~~-~~lyvfGG~~~~~~~~~~~~~ 165 (578)
++...+++|+|-| +.+|+++...... ..+... ..+|. ....+..... +++|+|-|
T Consensus 12 ~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg------------- 70 (194)
T cd00094 12 VTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKG------------- 70 (194)
T ss_pred EEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECC-------------
Confidence 3445689999977 3588887652211 111110 11222 1222223223 78999987
Q ss_pred ceEEEEEcCcceEE---EeccCCCCCCCCCceeEEEe--CCEEEEEecCCCCCcccCceEEEECCCCceEE-----ecCC
Q 008089 166 NDLYILNTETFVWK---RATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE-----LNTS 235 (578)
Q Consensus 166 ndv~~yd~~t~~W~---~~~~~g~~p~~R~~h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~-----v~~~ 235 (578)
+..|+|+..+..+. .+...+.++.+..--++... ++++|+|-| +..|.||..+++... +..
T Consensus 71 ~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg--------~~y~ry~~~~~~v~~~yP~~i~~- 141 (194)
T cd00094 71 DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG--------DKYWRYDEKTQKMDPGYPKLIET- 141 (194)
T ss_pred CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC--------CEEEEEeCCCccccCCCCcchhh-
Confidence 35677776542221 11111111111111233333 589999977 347788876554321 110
Q ss_pred CCCCCCCceeEEEEeC-CEEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 236 GMVLSPRAGHSTVAFG-KNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 236 g~~p~~R~~hs~v~~~-~~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
.-+..+..-.++.... +++|+|-|. ..|+||..+++
T Consensus 142 ~w~g~p~~idaa~~~~~~~~yfF~g~--------~y~~~d~~~~~ 178 (194)
T cd00094 142 DFPGVPDKVDAAFRWLDGYYYFFKGD--------QYWRFDPRSKE 178 (194)
T ss_pred cCCCcCCCcceeEEeCCCcEEEEECC--------EEEEEeCccce
Confidence 0011222223344344 789999874 48999988765
No 65
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=93.56 E-value=2.6 Score=43.22 Aligned_cols=113 Identities=16% Similarity=0.231 Sum_probs=69.7
Q ss_pred eeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEe-CCEEEEEecCCCCCcccCceEEEECCCCceEEecCC--CCCCC
Q 008089 164 YYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS--GMVLS 240 (578)
Q Consensus 164 ~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~--g~~p~ 240 (578)
....+..||+.+.+|..+... ..-.-..+... +++|||.|-....+.-...+..||.++.+|..+... ...|-
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~----i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNG----ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPG 89 (281)
T ss_pred CCCEEEEEECCCCEeecCCCC----ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCC
Confidence 367889999999999988532 11122333334 677877775543332345589999999999988762 23444
Q ss_pred CCceeEEEEeC-CEEEEEcCccCCCCccCcEEEEECCCCcEEEEEe
Q 008089 241 PRAGHSTVAFG-KNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 241 ~R~~hs~v~~~-~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~ 285 (578)
+.........+ +++++.|..... ...+..| +...|..+..
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~g---~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSANG---STFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cEEEEEeeccCCceEEEeceecCC---CceEEEE--cCCceEeccc
Confidence 43222222223 467777776221 2346666 5778999866
No 66
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=93.24 E-value=13 Score=39.37 Aligned_cols=171 Identities=18% Similarity=0.213 Sum_probs=91.9
Q ss_pred ccEEEEEcCCC--cEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCC--eEEecccCCCCCCC-
Q 008089 60 NQVHVFDTVNQ--TWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH--TWISPSVRGEGPEA- 134 (578)
Q Consensus 60 ~~v~~yD~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~P~~- 134 (578)
..++.+|..++ .|+... .++....+...+.+..++.+| +|..+ ..++.+|+.+. .|+... ..+..
T Consensus 155 g~l~a~d~~tG~~~W~~~~-~~~~~~~~~~~sp~~~~~~v~-~~~~~-----g~v~ald~~tG~~~W~~~~---~~~~g~ 224 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSR-VTPALTLRGSASPVIADGGVL-VGFAG-----GKLVALDLQTGQPLWEQRV---ALPKGR 224 (377)
T ss_pred CeEEEEEcCCCceeeEEcc-CCCceeecCCCCCEEECCEEE-EECCC-----CEEEEEEccCCCEeeeecc---ccCCCC
Confidence 45889998765 477522 111111122334455566555 44322 25899998775 475421 11111
Q ss_pred -------CcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcc--eEEEeccCCCCCCCCCceeEEEeCCEEEE
Q 008089 135 -------REGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIV 205 (578)
Q Consensus 135 -------R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~--~W~~~~~~g~~p~~R~~h~~~~~~~~lyV 205 (578)
....+.++.++.+|+.+. ...++.||+.+. .|..-. + ...+.++.++++|+
T Consensus 225 ~~~~~~~~~~~~p~~~~~~vy~~~~------------~g~l~a~d~~tG~~~W~~~~-----~---~~~~p~~~~~~vyv 284 (377)
T TIGR03300 225 TELERLVDVDGDPVVDGGQVYAVSY------------QGRVAALDLRSGRVLWKRDA-----S---SYQGPAVDDNRLYV 284 (377)
T ss_pred CchhhhhccCCccEEECCEEEEEEc------------CCEEEEEECCCCcEEEeecc-----C---CccCceEeCCEEEE
Confidence 112233455777887543 235888998765 475431 1 11233456888888
Q ss_pred EecCCCCCcccCceEEEECCCC--ceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 206 IGGEDGHDYYLSDVHILDTDTL--TWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 206 ~GG~~~~~~~~~di~~yD~~t~--~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
... ...++++|..+. .|+.-.. ..+...+.+..++.||+.. . ...++++|..+++
T Consensus 285 ~~~-------~G~l~~~d~~tG~~~W~~~~~-----~~~~~ssp~i~g~~l~~~~-~------~G~l~~~d~~tG~ 341 (377)
T TIGR03300 285 TDA-------DGVVVALDRRSGSELWKNDEL-----KYRQLTAPAVVGGYLVVGD-F------EGYLHWLSREDGS 341 (377)
T ss_pred ECC-------CCeEEEEECCCCcEEEccccc-----cCCccccCEEECCEEEEEe-C------CCEEEEEECCCCC
Confidence 642 235889998765 4765221 1122233345677777643 2 1348999988764
No 67
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.17 E-value=6 Score=40.03 Aligned_cols=154 Identities=21% Similarity=0.221 Sum_probs=90.4
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeE
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W 122 (578)
++.+|.--|.... +.+..+|+.+++-.+.. ++|..-.+=+++.++++||..-=.. ..+++||..+.+=
T Consensus 55 ~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk~-----~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 55 DGTLYESTGLYGQ----SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWKE-----GTGFVYDPNTLKK 122 (264)
T ss_dssp TTEEEEEECSTTE----EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESSS-----SEEEEEETTTTEE
T ss_pred CCEEEEeCCCCCc----EEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEecC-----CeEEEEccccceE
Confidence 3456665554332 56899999998765422 5777788899999999999985432 4689999987543
Q ss_pred EecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEE-eccC-CCCCCCCCceeEEEeC
Q 008089 123 ISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR-ATTS-GNPPSARDSHTCSSWK 200 (578)
Q Consensus 123 ~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~-~~~~-g~~p~~R~~h~~~~~~ 200 (578)
.. ..+.+..|-++|..+..|++--| .+.++.+||.+.+-.. +... ...|. +.---+-.++
T Consensus 123 ~~-----~~~y~~EGWGLt~dg~~Li~SDG------------S~~L~~~dP~~f~~~~~i~V~~~g~pv-~~LNELE~i~ 184 (264)
T PF05096_consen 123 IG-----TFPYPGEGWGLTSDGKRLIMSDG------------SSRLYFLDPETFKEVRTIQVTDNGRPV-SNLNELEYIN 184 (264)
T ss_dssp EE-----EEE-SSS--EEEECSSCEEEE-S------------SSEEEEE-TTT-SEEEEEE-EETTEE----EEEEEEET
T ss_pred EE-----EEecCCcceEEEcCCCEEEEECC------------ccceEEECCcccceEEEEEEEECCEEC-CCcEeEEEEc
Confidence 22 23334578899988889999888 5778899998765332 2211 01111 1112233345
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCceEEe
Q 008089 201 NKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL 232 (578)
Q Consensus 201 ~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v 232 (578)
+.||.= -...+.|.+.||+++.-...
T Consensus 185 G~IyAN------VW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 185 GKIYAN------VWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp TEEEEE------ETTSSEEEEEETTT-BEEEE
T ss_pred CEEEEE------eCCCCeEEEEeCCCCeEEEE
Confidence 655541 12356688999999875543
No 68
>PRK04792 tolB translocation protein TolB; Provisional
Probab=92.96 E-value=17 Score=39.88 Aligned_cols=189 Identities=13% Similarity=0.141 Sum_probs=94.3
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccE
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHS 139 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs 139 (578)
..+|++|+.+++-..+. ..+..........-+.+|++....++ ..++|.+|+.+.+.+++..... .....
T Consensus 242 ~~L~~~dl~tg~~~~lt---~~~g~~~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~~----~~~~p 311 (448)
T PRK04792 242 AEIFVQDIYTQVREKVT---SFPGINGAPRFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRHRA----IDTEP 311 (448)
T ss_pred cEEEEEECCCCCeEEec---CCCCCcCCeeECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccCCC----Cccce
Confidence 46999999887766543 22211111111122445655543332 2579999999988877642110 11111
Q ss_pred EEEECC-EEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCc
Q 008089 140 AALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSD 218 (578)
Q Consensus 140 ~~~~~~-~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~d 218 (578)
....++ .|++..... . ...+|++|+.+.+++.+...+.. ........+++.++|.+.... ...
T Consensus 312 ~wSpDG~~I~f~s~~~------g---~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~~~~g---~~~ 375 (448)
T PRK04792 312 SWHPDGKSLIFTSERG------G---KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVNRTNG---KFN 375 (448)
T ss_pred EECCCCCEEEEEECCC------C---CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEEecCC---ceE
Confidence 122234 444433211 1 24799999999998887532211 111222335544444443322 236
Q ss_pred eEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEE
Q 008089 219 VHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (578)
Q Consensus 219 i~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l 283 (578)
++.+|+.+...+.+.... ... .. ...-+++.+++...... ...+++++.+ +.+...
T Consensus 376 I~~~dl~~g~~~~lt~~~---~d~-~p-s~spdG~~I~~~~~~~g---~~~l~~~~~~-G~~~~~ 431 (448)
T PRK04792 376 IARQDLETGAMQVLTSTR---LDE-SP-SVAPNGTMVIYSTTYQG---KQVLAAVSID-GRFKAR 431 (448)
T ss_pred EEEEECCCCCeEEccCCC---CCC-Cc-eECCCCCEEEEEEecCC---ceEEEEEECC-CCceEE
Confidence 899999998887765421 111 11 22334444444332221 2347888864 444443
No 69
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=92.84 E-value=11 Score=37.47 Aligned_cols=183 Identities=20% Similarity=0.206 Sum_probs=88.5
Q ss_pred EEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEE-EC-CEEEEEcccCCCCCCCcEEEEECCCCeEE
Q 008089 46 LYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VG-ENLYVFGGTDGMNPLRDLHILDTSSHTWI 123 (578)
Q Consensus 46 Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~-~kIYv~GG~~~~~~~~~v~~yD~~t~~W~ 123 (578)
+|+.++.+ +.+++||+.+++-...-..+. .++ +++. -+ ..+|+.++.+ +.+.+||+.+.+..
T Consensus 3 ~~~s~~~d------~~v~~~d~~t~~~~~~~~~~~--~~~---~l~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~ 66 (300)
T TIGR03866 3 AYVSNEKD------NTISVIDTATLEVTRTFPVGQ--RPR---GITLSKDGKLLYVCASDS-----DTIQVIDLATGEVI 66 (300)
T ss_pred EEEEecCC------CEEEEEECCCCceEEEEECCC--CCC---ceEECCCCCEEEEEECCC-----CeEEEEECCCCcEE
Confidence 66666632 368899988776433221111 112 2222 23 3577776532 45889999887764
Q ss_pred ecccCCCCCCCCcccEEEEE-C-CEEEEEccCCCCCCCCCceeeceEEEEEcCcceEE-EeccCCCCCCCCCceeEEE-e
Q 008089 124 SPSVRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-RATTSGNPPSARDSHTCSS-W 199 (578)
Q Consensus 124 ~l~~~g~~P~~R~~hs~~~~-~-~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~-~~~~~g~~p~~R~~h~~~~-~ 199 (578)
..-..+ ..+ ..++.. + +.+|+.++. ...+.+||+.+..-. .+.. ....+.++. .
T Consensus 67 ~~~~~~--~~~---~~~~~~~~g~~l~~~~~~-----------~~~l~~~d~~~~~~~~~~~~------~~~~~~~~~~~ 124 (300)
T TIGR03866 67 GTLPSG--PDP---ELFALHPNGKILYIANED-----------DNLVTVIDIETRKVLAEIPV------GVEPEGMAVSP 124 (300)
T ss_pred EeccCC--CCc---cEEEECCCCCEEEEEcCC-----------CCeEEEEECCCCeEEeEeeC------CCCcceEEECC
Confidence 311111 111 122222 3 456665541 235788898775422 2211 111122332 3
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 200 ~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
++.+++++.... +.++.||..+..-......+ .+..+.++.-+++.+++++..+ ..+.+||+++..
T Consensus 125 dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~-----~~v~i~d~~~~~ 190 (300)
T TIGR03866 125 DGKIVVNTSETT-----NMAHFIDTKTYEIVDNVLVD----QRPRFAEFTADGKELWVSSEIG-----GTVSVIDVATRK 190 (300)
T ss_pred CCCEEEEEecCC-----CeEEEEeCCCCeEEEEEEcC----CCccEEEECCCCCEEEEEcCCC-----CEEEEEEcCcce
Confidence 666777665332 23566787665432211111 1112223333455444554322 348999998875
Q ss_pred E
Q 008089 280 W 280 (578)
Q Consensus 280 W 280 (578)
.
T Consensus 191 ~ 191 (300)
T TIGR03866 191 V 191 (300)
T ss_pred e
Confidence 4
No 70
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.62 E-value=1.6 Score=44.67 Aligned_cols=94 Identities=17% Similarity=0.198 Sum_probs=60.0
Q ss_pred ccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeC--CCCCC
Q 008089 215 YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITT--GEGPS 291 (578)
Q Consensus 215 ~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~--~~~P~ 291 (578)
.+..+..||+.+.+|..+.. -..... ..+... +++||+.|-++-.......+..||.++.+|..+... ...|.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~---~i~G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGN---GISGTV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPG 89 (281)
T ss_pred CCCEEEEEECCCCEeecCCC---CceEEE-EEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCC
Confidence 46789999999999998865 211211 223333 677888776655443456699999999999998763 23443
Q ss_pred CceeeeEeeeeccCCCEEEEEccc
Q 008089 292 ARFSVAGDCLDPLKGGVLVFIGGC 315 (578)
Q Consensus 292 ~r~~~~~~~~~~~~~~~l~v~GG~ 315 (578)
+-.... +.......+++.|..
T Consensus 90 pv~a~~---~~~~d~~~~~~aG~~ 110 (281)
T PF12768_consen 90 PVTALT---FISNDGSNFWVAGRS 110 (281)
T ss_pred cEEEEE---eeccCCceEEEecee
Confidence 332222 222345567777765
No 71
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=92.48 E-value=17 Score=38.82 Aligned_cols=148 Identities=15% Similarity=0.106 Sum_probs=77.4
Q ss_pred CcEEEEECCCCeEEecccCCCCCCCCcccEEEEECC-EEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCC
Q 008089 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (578)
Q Consensus 110 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p 188 (578)
..++++|+.+.....+.. ....... .....++ .|++..... -..++|++|+.+...+.+.....
T Consensus 214 ~~i~v~d~~~g~~~~~~~---~~~~~~~-~~~spDg~~l~~~~~~~---------~~~~i~~~d~~~~~~~~l~~~~~-- 278 (417)
T TIGR02800 214 PEIYVQDLATGQREKVAS---FPGMNGA-PAFSPDGSKLAVSLSKD---------GNPDIYVMDLDGKQLTRLTNGPG-- 278 (417)
T ss_pred cEEEEEECCCCCEEEeec---CCCCccc-eEECCCCCEEEEEECCC---------CCccEEEEECCCCCEEECCCCCC--
Confidence 579999998876655431 1111111 1122233 455543211 12578999999888777753211
Q ss_pred CCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeE-EEEeCCEEEEEcCccCCCCcc
Q 008089 189 SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHS-TVAFGKNLFVFGGFTDSQNLY 267 (578)
Q Consensus 189 ~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs-~v~~~~~iyV~GG~~~~~~~~ 267 (578)
.. .......+++.++|...... ...++.+|..+..+..+...+ ..... ...-+++.+++..... -.
T Consensus 279 -~~-~~~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~---~~ 345 (417)
T TIGR02800 279 -ID-TEPSWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREG---GG 345 (417)
T ss_pred -CC-CCEEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccC---Cc
Confidence 11 11112224444434332221 236999999988888775422 11112 2223455555554322 12
Q ss_pred CcEEEEECCCCcEEEEEe
Q 008089 268 DDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 268 ~dv~~ydi~t~~W~~l~~ 285 (578)
..++++|+.+..++.+..
T Consensus 346 ~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 346 FNIAVMDLDGGGERVLTD 363 (417)
T ss_pred eEEEEEeCCCCCeEEccC
Confidence 469999999977766643
No 72
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=92.47 E-value=17 Score=38.81 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=77.3
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECC-EEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCccc
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGE-NLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGH 138 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 138 (578)
..++++|+.++....+. ..+....... ..-++ +|++....++ ..++|.+|+.+.....+...... .. .
T Consensus 214 ~~i~v~d~~~g~~~~~~---~~~~~~~~~~-~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~~~---~~-~ 282 (417)
T TIGR02800 214 PEIYVQDLATGQREKVA---SFPGMNGAPA-FSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNGPGI---DT-E 282 (417)
T ss_pred cEEEEEECCCCCEEEee---cCCCCccceE-ECCCCCEEEEEECCCC---CccEEEEECCCCCEEECCCCCCC---CC-C
Confidence 46889999887666543 1221112111 12243 4655433222 25799999998877665422111 00 1
Q ss_pred EEEEECC-EEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCcee-EEEeCCEEEEEecCCCCCccc
Q 008089 139 SAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT-CSSWKNKIIVIGGEDGHDYYL 216 (578)
Q Consensus 139 s~~~~~~-~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~-~~~~~~~lyV~GG~~~~~~~~ 216 (578)
.....++ +|++..... . ...+|++|+.+..+..+...+ ..... ....+++.+++...... .
T Consensus 283 ~~~s~dg~~l~~~s~~~------g---~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~~---~ 345 (417)
T TIGR02800 283 PSWSPDGKSIAFTSDRG------G---SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREGG---G 345 (417)
T ss_pred EEECCCCCEEEEEECCC------C---CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccCC---c
Confidence 1111234 444433211 0 247899999988887775322 11122 22235666666554332 2
Q ss_pred CceEEEECCCCceEEecC
Q 008089 217 SDVHILDTDTLTWKELNT 234 (578)
Q Consensus 217 ~di~~yD~~t~~W~~v~~ 234 (578)
..++.+|+.+..++.+..
T Consensus 346 ~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 346 FNIAVMDLDGGGERVLTD 363 (417)
T ss_pred eEEEEEeCCCCCeEEccC
Confidence 468999999877766643
No 73
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.26 E-value=13 Score=36.83 Aligned_cols=202 Identities=12% Similarity=0.049 Sum_probs=103.5
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEEECCCC
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSH 120 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~yD~~t~ 120 (578)
++.||+.-- ....++++|+.+..-..... +. -.+++.. ++++|+... ..+.++|+.+.
T Consensus 11 ~g~l~~~D~------~~~~i~~~~~~~~~~~~~~~----~~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g 70 (246)
T PF08450_consen 11 DGRLYWVDI------PGGRIYRVDPDTGEVEVIDL----PG---PNGMAFDRPDGRLYVADS-------GGIAVVDPDTG 70 (246)
T ss_dssp TTEEEEEET------TTTEEEEEETTTTEEEEEES----SS---EEEEEEECTTSEEEEEET-------TCEEEEETTTT
T ss_pred CCEEEEEEc------CCCEEEEEECCCCeEEEEec----CC---CceEEEEccCCEEEEEEc-------CceEEEecCCC
Confidence 556777632 23579999999887665431 11 3344443 678888864 24677799999
Q ss_pred eEEecccC--CCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEE
Q 008089 121 TWISPSVR--GEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS 198 (578)
Q Consensus 121 ~W~~l~~~--g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~ 198 (578)
+++.+... +..+..+..-.++.-+++||+-.-.... . .......+|++++. .+...+..... ....++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~-~--~~~~~g~v~~~~~~-~~~~~~~~~~~-----~pNGi~~ 141 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGG-A--SGIDPGSVYRIDPD-GKVTVVADGLG-----FPNGIAF 141 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBC-T--TCGGSEEEEEEETT-SEEEEEEEEES-----SEEEEEE
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCc-c--ccccccceEEECCC-CeEEEEecCcc-----cccceEE
Confidence 98765532 1113333333334346787774321100 0 00001679999998 66555532111 1123333
Q ss_pred e--CCEEEEEecCCCCCcccCceEEEECCC--CceEEecCCCCCCCCC--ceeEEEEeCCEEEEEcCccCCCCccCcEEE
Q 008089 199 W--KNKIIVIGGEDGHDYYLSDVHILDTDT--LTWKELNTSGMVLSPR--AGHSTVAFGKNLFVFGGFTDSQNLYDDLYM 272 (578)
Q Consensus 199 ~--~~~lyV~GG~~~~~~~~~di~~yD~~t--~~W~~v~~~g~~p~~R--~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ 272 (578)
. ++.||+.-- ..+.|+.|++.. ..+.........+... -.-.++--+++|||..-. .+.|++
T Consensus 142 s~dg~~lyv~ds------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~------~~~I~~ 209 (246)
T PF08450_consen 142 SPDGKTLYVADS------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG------GGRIVV 209 (246)
T ss_dssp ETTSSEEEEEET------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET------TTEEEE
T ss_pred CCcchheeeccc------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC------CCEEEE
Confidence 3 346777422 345599998853 3233222110111111 112223335788886221 235999
Q ss_pred EECCCCcEEEEEe
Q 008089 273 IDVDSGLWTKVIT 285 (578)
Q Consensus 273 ydi~t~~W~~l~~ 285 (578)
||++...-..+..
T Consensus 210 ~~p~G~~~~~i~~ 222 (246)
T PF08450_consen 210 FDPDGKLLREIEL 222 (246)
T ss_dssp EETTSCEEEEEE-
T ss_pred ECCCccEEEEEcC
Confidence 9999666666654
No 74
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=91.82 E-value=24 Score=39.10 Aligned_cols=126 Identities=18% Similarity=0.218 Sum_probs=65.4
Q ss_pred eEEEECCEEEEEcccCCCCCCCcEEEEECCCCe--EEecccCC-CCCCC-CcccEEEEEC-CEEEEEccCCCCCCCCCce
Q 008089 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVRG-EGPEA-REGHSAALVG-KRLFIFGGCGKSSNTNDEV 163 (578)
Q Consensus 89 s~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~--W~~l~~~g-~~P~~-R~~hs~~~~~-~~lyvfGG~~~~~~~~~~~ 163 (578)
+-++.++++|+.... ..++.+|..+.+ |+...... ....+ ......++.+ +++|+...
T Consensus 56 sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~----------- 118 (488)
T cd00216 56 TPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF----------- 118 (488)
T ss_pred CCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-----------
Confidence 445778999987542 469999988754 87532111 00000 0112234445 77777433
Q ss_pred eeceEEEEEcCcc--eEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCC---cccCceEEEECCCC--ceEEec
Q 008089 164 YYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHD---YYLSDVHILDTDTL--TWKELN 233 (578)
Q Consensus 164 ~~ndv~~yd~~t~--~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~---~~~~di~~yD~~t~--~W~~v~ 233 (578)
...++.+|.++. .|+.-......+......+.++.++.+|+ |...... .....++.||.++. .|+.-.
T Consensus 119 -~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 119 -DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred -CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 246888998754 58754321000000012233455666554 4322111 12456899999765 487643
No 75
>PRK04792 tolB translocation protein TolB; Provisional
Probab=91.82 E-value=23 Score=38.82 Aligned_cols=149 Identities=12% Similarity=0.109 Sum_probs=78.1
Q ss_pred CcEEEEECCCCeEEecccCCCCCCCCcccEEEEEC-CEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCC
Q 008089 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (578)
Q Consensus 110 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p 188 (578)
..+|++|+.+.+-..+. ..+.... ......+ +.|++..... . ..++|++|+.+.+.+.+....
T Consensus 242 ~~L~~~dl~tg~~~~lt---~~~g~~~-~~~wSPDG~~La~~~~~~------g---~~~Iy~~dl~tg~~~~lt~~~--- 305 (448)
T PRK04792 242 AEIFVQDIYTQVREKVT---SFPGING-APRFSPDGKKLALVLSKD------G---QPEIYVVDIATKALTRITRHR--- 305 (448)
T ss_pred cEEEEEECCCCCeEEec---CCCCCcC-CeeECCCCCEEEEEEeCC------C---CeEEEEEECCCCCeEECccCC---
Confidence 57999999887765543 1121111 1112223 4455543211 1 257999999999888775321
Q ss_pred CCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccC
Q 008089 189 SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYD 268 (578)
Q Consensus 189 ~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~ 268 (578)
..........+++.++|...... ..++|.+|+++..++.+...+.. .......-+++.+++.+.... ..
T Consensus 306 -~~~~~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~~~~g---~~ 374 (448)
T PRK04792 306 -AIDTEPSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVNRTNG---KF 374 (448)
T ss_pred -CCccceEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEEecCC---ce
Confidence 11111122234444444322211 24799999999999887532211 111122334443334333221 24
Q ss_pred cEEEEECCCCcEEEEEe
Q 008089 269 DLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 269 dv~~ydi~t~~W~~l~~ 285 (578)
.+|++|+.++..+.+..
T Consensus 375 ~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 375 NIARQDLETGAMQVLTS 391 (448)
T ss_pred EEEEEECCCCCeEEccC
Confidence 69999999998877653
No 76
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=91.36 E-value=14 Score=35.42 Aligned_cols=193 Identities=12% Similarity=0.111 Sum_probs=85.1
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCCcEEEE
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHIL 115 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~y 115 (578)
++.+..++.++++|+.+ +.+.+||..+..-.... .+ ..... ..+... +++.+++|+.+ ..+.+|
T Consensus 14 ~~~~~~~~~~l~~~~~~------g~i~i~~~~~~~~~~~~-~~--~~~~i-~~~~~~~~~~~l~~~~~~-----~~i~i~ 78 (289)
T cd00200 14 CVAFSPDGKLLATGSGD------GTIKVWDLETGELLRTL-KG--HTGPV-RDVAASADGTYLASGSSD-----KTIRLW 78 (289)
T ss_pred EEEEcCCCCEEEEeecC------cEEEEEEeeCCCcEEEE-ec--CCcce-eEEEECCCCCEEEEEcCC-----CeEEEE
Confidence 33343333456666642 45788888765422211 11 11111 122222 44466666653 358888
Q ss_pred ECCCCeEEecccCCCCCCCCcccEEEEEC-CEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCce
Q 008089 116 DTSSHTWISPSVRGEGPEAREGHSAALVG-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSH 194 (578)
Q Consensus 116 D~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h 194 (578)
|..+.+....- . .....-.++.... +.+++.|+. ...+.+||+.+..-...-. .....-.
T Consensus 79 ~~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~~~~~----~~~~~i~ 139 (289)
T cd00200 79 DLETGECVRTL-T---GHTSYVSSVAFSPDGRILSSSSR-----------DKTIKVWDVETGKCLTTLR----GHTDWVN 139 (289)
T ss_pred EcCcccceEEE-e---ccCCcEEEEEEcCCCCEEEEecC-----------CCeEEEEECCCcEEEEEec----cCCCcEE
Confidence 88765322111 0 0111122233333 355555551 2457788887544322211 0111112
Q ss_pred eEEEeC-CEEEEEecCCCCCcccCceEEEECCCCce-EEecCCCCCCCCCceeEEEEeC-CEEEEEcCccCCCCccCcEE
Q 008089 195 TCSSWK-NKIIVIGGEDGHDYYLSDVHILDTDTLTW-KELNTSGMVLSPRAGHSTVAFG-KNLFVFGGFTDSQNLYDDLY 271 (578)
Q Consensus 195 ~~~~~~-~~lyV~GG~~~~~~~~~di~~yD~~t~~W-~~v~~~g~~p~~R~~hs~v~~~-~~iyV~GG~~~~~~~~~dv~ 271 (578)
++.... +.+++.|+.+ +.+.+||+.+..- ..+.. ....-.++.... ++.+++++.. ..+.
T Consensus 140 ~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~~------~~i~ 202 (289)
T cd00200 140 SVAFSPDGTFVASSSQD------GTIKLWDLRTGKCVATLTG-----HTGEVNSVAFSPDGEKLLSSSSD------GTIK 202 (289)
T ss_pred EEEEcCcCCEEEEEcCC------CcEEEEEccccccceeEec-----CccccceEEECCCcCEEEEecCC------CcEE
Confidence 233333 4555544322 3478888864332 11111 111112233333 3355666542 3588
Q ss_pred EEECCCCcE
Q 008089 272 MIDVDSGLW 280 (578)
Q Consensus 272 ~ydi~t~~W 280 (578)
+||+.+...
T Consensus 203 i~d~~~~~~ 211 (289)
T cd00200 203 LWDLSTGKC 211 (289)
T ss_pred EEECCCCce
Confidence 999887543
No 77
>PRK00178 tolB translocation protein TolB; Provisional
Probab=91.23 E-value=25 Score=38.04 Aligned_cols=199 Identities=13% Similarity=0.112 Sum_probs=97.2
Q ss_pred cCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEEC-CEEEEEcccCCCCCCCcEEEEECCC
Q 008089 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVG-ENLYVFGGTDGMNPLRDLHILDTSS 119 (578)
Q Consensus 41 ~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~kIYv~GG~~~~~~~~~v~~yD~~t 119 (578)
.++++|+... ... ....+|++|+.+++-+.+.. .+.. .......-+ .+|++..-.++ ..++|++|+.+
T Consensus 208 pDG~~la~~s-~~~---~~~~l~~~~l~~g~~~~l~~---~~g~-~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~ 276 (430)
T PRK00178 208 PDGKRIAYVS-FEQ---KRPRIFVQNLDTGRREQITN---FEGL-NGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLAS 276 (430)
T ss_pred CCCCEEEEEE-cCC---CCCEEEEEECCCCCEEEccC---CCCC-cCCeEECCCCCEEEEEEccCC---CceEEEEECCC
Confidence 4566564432 221 12469999999887766531 1110 111111123 45544332222 25799999999
Q ss_pred CeEEecccCCCCCCCCcccEEEEECC-EEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEE
Q 008089 120 HTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS 198 (578)
Q Consensus 120 ~~W~~l~~~g~~P~~R~~hs~~~~~~-~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~ 198 (578)
...+++... +. .........++ .|++..... -...+|++|+.+..++.+...+ .........
T Consensus 277 ~~~~~lt~~---~~-~~~~~~~spDg~~i~f~s~~~---------g~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~S 339 (430)
T PRK00178 277 RQLSRVTNH---PA-IDTEPFWGKDGRTLYFTSDRG---------GKPQIYKVNVNGGRAERVTFVG----NYNARPRLS 339 (430)
T ss_pred CCeEEcccC---CC-CcCCeEECCCCCEEEEEECCC---------CCceEEEEECCCCCEEEeecCC----CCccceEEC
Confidence 888765421 11 11111122233 454432210 1246899999988888775321 111112222
Q ss_pred eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCC
Q 008089 199 WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (578)
Q Consensus 199 ~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~ 278 (578)
.+++.+++...... ...++.+|+.+..++.+...+. ...-...-+++.+++...... ...++.++....
T Consensus 340 pdg~~i~~~~~~~~---~~~l~~~dl~tg~~~~lt~~~~-----~~~p~~spdg~~i~~~~~~~g---~~~l~~~~~~g~ 408 (430)
T PRK00178 340 ADGKTLVMVHRQDG---NFHVAAQDLQRGSVRILTDTSL-----DESPSVAPNGTMLIYATRQQG---RGVLMLVSINGR 408 (430)
T ss_pred CCCCEEEEEEccCC---ceEEEEEECCCCCEEEccCCCC-----CCCceECCCCCEEEEEEecCC---ceEEEEEECCCC
Confidence 34444444332222 2359999999988887754211 111123335555555443221 234777776543
No 78
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=91.23 E-value=28 Score=38.63 Aligned_cols=122 Identities=14% Similarity=0.114 Sum_probs=60.3
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCC--cEEEeeecC-CCCCC-CcceeEEEEC-CEEEEEcccCCCCCCCcEEEEEC
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKG-SPPTP-RDSHSCTTVG-ENLYVFGGTDGMNPLRDLHILDT 117 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g-~~P~~-R~~hs~~~~~-~kIYv~GG~~~~~~~~~v~~yD~ 117 (578)
++.||+.... ..++.+|..++ .|+.-...+ ....+ -.....+..+ ++||+... -..++.+|.
T Consensus 61 ~g~vy~~~~~-------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------~g~v~AlD~ 127 (488)
T cd00216 61 DGDMYFTTSH-------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------DGRLVALDA 127 (488)
T ss_pred CCEEEEeCCC-------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------CCeEEEEEC
Confidence 4567775432 46899999865 587632111 00011 1112234446 78887542 246999998
Q ss_pred CCC--eEEecccCCCC-CCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcc--eEEEe
Q 008089 118 SSH--TWISPSVRGEG-PEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRA 181 (578)
Q Consensus 118 ~t~--~W~~l~~~g~~-P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~--~W~~~ 181 (578)
.+. .|+.-. .... +......+.++.++.+|+ |..... .........++.||..+. .|+.-
T Consensus 128 ~TG~~~W~~~~-~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~--~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 128 ETGKQVWKFGN-NDQVPPGYTMTGAPTIVKKLVII-GSSGAE--FFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred CCCCEeeeecC-CCCcCcceEecCCCEEECCEEEE-eccccc--cccCCCCcEEEEEECCCCceeeEee
Confidence 865 486522 1110 000012233455666554 431110 000112457899999865 58754
No 79
>PRK05137 tolB translocation protein TolB; Provisional
Probab=91.15 E-value=26 Score=38.11 Aligned_cols=147 Identities=12% Similarity=0.032 Sum_probs=75.2
Q ss_pred CcEEEEECCCCeEEecccCCCCCCCCcccEEEEECC-EEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCC
Q 008089 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (578)
Q Consensus 110 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p 188 (578)
..+|++|+.+.+...+. ..+...... ....++ +|++..... -..++|++|+.+.....+... +
T Consensus 226 ~~i~~~dl~~g~~~~l~---~~~g~~~~~-~~SPDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~Lt~~---~ 289 (435)
T PRK05137 226 PRVYLLDLETGQRELVG---NFPGMTFAP-RFSPDGRKVVMSLSQG---------GNTDIYTMDLRSGTTTRLTDS---P 289 (435)
T ss_pred CEEEEEECCCCcEEEee---cCCCcccCc-EECCCCCEEEEEEecC---------CCceEEEEECCCCceEEccCC---C
Confidence 57999999988776654 122111111 222234 444432211 135789999998887776532 1
Q ss_pred CCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCC-EEEEEcCccCCCCcc
Q 008089 189 SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGK-NLFVFGGFTDSQNLY 267 (578)
Q Consensus 189 ~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~-~iyV~GG~~~~~~~~ 267 (578)
. .........+++-++|...... ..++|++|..+...+.+... ..+.......-++ .|++.. .... .
T Consensus 290 ~-~~~~~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~-~~~~---~ 357 (435)
T PRK05137 290 A-IDTSPSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTK-QGGG---Q 357 (435)
T ss_pred C-ccCceeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEE-cCCC---c
Confidence 1 1111222234544444332211 24699999988877776531 1111111222334 444433 2111 2
Q ss_pred CcEEEEECCCCcEEEEE
Q 008089 268 DDLYMIDVDSGLWTKVI 284 (578)
Q Consensus 268 ~dv~~ydi~t~~W~~l~ 284 (578)
..++++|+.+.....+.
T Consensus 358 ~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 358 FSIGVMKPDGSGERILT 374 (435)
T ss_pred eEEEEEECCCCceEecc
Confidence 46899998877665553
No 80
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.30 E-value=35 Score=38.29 Aligned_cols=124 Identities=18% Similarity=0.128 Sum_probs=67.0
Q ss_pred eEEEECCEEEEEcccCCCCCCCcEEEEECCCC--eEEecccCC-CC-C---CCCcccEEEEECCEEEEEccCCCCCCCCC
Q 008089 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSH--TWISPSVRG-EG-P---EAREGHSAALVGKRLFIFGGCGKSSNTND 161 (578)
Q Consensus 89 s~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~--~W~~l~~~g-~~-P---~~R~~hs~~~~~~~lyvfGG~~~~~~~~~ 161 (578)
+-++.+++||+.... ..++.+|..+. .|+.-.... .. + ......+.++.++++|+...
T Consensus 64 tPvv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~--------- 128 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL--------- 128 (527)
T ss_pred CCEEECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC---------
Confidence 445678999986542 36999998875 486532110 00 0 00112234566778877432
Q ss_pred ceeeceEEEEEcCcc--eEEEeccCCCCCC-CCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCc--eEEec
Q 008089 162 EVYYNDLYILNTETF--VWKRATTSGNPPS-ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELN 233 (578)
Q Consensus 162 ~~~~ndv~~yd~~t~--~W~~~~~~g~~p~-~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~--W~~v~ 233 (578)
...++.+|..+. .|+.-.. .... .....+-++.++.||+-..... ......++.||.++.+ |+.-.
T Consensus 129 ---dg~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 129 ---DARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ---CCEEEEEECCCCCEEeecccc--cccccccccCCcEEECCEEEEeecccc-cCCCcEEEEEECCCCceeEeccC
Confidence 245889998865 4765321 1111 1112233456887776432111 1134568899988764 76544
No 81
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.24 E-value=24 Score=36.26 Aligned_cols=159 Identities=18% Similarity=0.232 Sum_probs=84.3
Q ss_pred CCCCCCcc---eEEEEEcCCCEEEEEcCCCCC--------C--------CCcccEEEEEcCCCc----EEEeeecCCCCC
Q 008089 27 SGPGKRWG---HTCNAIKGGRFLYVFGGYGKD--------N--------CQTNQVHVFDTVNQT----WSQPVIKGSPPT 83 (578)
Q Consensus 27 ~~P~~R~g---hs~v~v~~g~~Iyv~GG~~~~--------~--------~~~~~v~~yD~~t~~----W~~l~~~g~~P~ 83 (578)
-+|.||.| |.++...++ .+.||||-.. . ...+.+|.||..+++ |++ +-..+.
T Consensus 28 vG~~P~SGGDTYNAV~~vDd--~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWke---sih~~~ 102 (339)
T PF09910_consen 28 VGPPPTSGGDTYNAVEWVDD--FIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKE---SIHDKT 102 (339)
T ss_pred ccCCCCCCCccceeeeeecc--eEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEec---ccCCcc
Confidence 45556654 445544443 5678998211 0 124679999998764 765 112232
Q ss_pred CCcceeEEE----ECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCC
Q 008089 84 PRDSHSCTT----VGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNT 159 (578)
Q Consensus 84 ~R~~hs~~~----~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~ 159 (578)
.-++--.-. ++++||+.-+ ++... --+|..|..+..-+++. +.|.. -.+.+.+..+| |. +.
T Consensus 103 ~WaGEVSdIlYdP~~D~LLlAR~-DGh~n-LGvy~ldr~~g~~~~L~---~~ps~---KG~~~~D~a~F---~i-~~--- 167 (339)
T PF09910_consen 103 KWAGEVSDILYDPYEDRLLLARA-DGHAN-LGVYSLDRRTGKAEKLS---SNPSL---KGTLVHDYACF---GI-NN--- 167 (339)
T ss_pred ccccchhheeeCCCcCEEEEEec-CCcce-eeeEEEcccCCceeecc---CCCCc---CceEeeeeEEE---ec-cc---
Confidence 222221111 2567777643 33322 35899999888877765 22322 12222232222 21 11
Q ss_pred CCceeeceEEEEEcCcceE--EEecc----CCCCCCCCCceeEEEeCCEEEEE
Q 008089 160 NDEVYYNDLYILNTETFVW--KRATT----SGNPPSARDSHTCSSWKNKIIVI 206 (578)
Q Consensus 160 ~~~~~~ndv~~yd~~t~~W--~~~~~----~g~~p~~R~~h~~~~~~~~lyV~ 206 (578)
-..-...+++||+.+++| +.... .+.....|..-.++...+++|.|
T Consensus 168 -~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 168 -FHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred -cccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 111257899999999999 44332 12233344455566667777766
No 82
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=90.11 E-value=6.7 Score=34.92 Aligned_cols=85 Identities=9% Similarity=0.114 Sum_probs=55.4
Q ss_pred eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEE-ECCC
Q 008089 199 WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMI-DVDS 277 (578)
Q Consensus 199 ~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~y-di~t 277 (578)
++|-+|-..-. .......|..||..+.+|+.+...............+.++++|-++.-........=++|++ |.++
T Consensus 4 inGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 4 INGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred ECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 46667666544 11234669999999999999986211223455666778888887765543322223578888 4667
Q ss_pred CcEEEEEe
Q 008089 278 GLWTKVIT 285 (578)
Q Consensus 278 ~~W~~l~~ 285 (578)
..|.+...
T Consensus 82 ~~Wsk~~~ 89 (129)
T PF08268_consen 82 QEWSKKHI 89 (129)
T ss_pred ceEEEEEE
Confidence 78998755
No 83
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=90.11 E-value=29 Score=36.90 Aligned_cols=233 Identities=14% Similarity=0.132 Sum_probs=113.7
Q ss_pred CCCCCcceEEEEEcCCCEEEEEcCCCC---CCCCcccEEEEEcCCCcEEE-eeecCCCCCCCc-------ceeEEEECCE
Q 008089 28 GPGKRWGHTCNAIKGGRFLYVFGGYGK---DNCQTNQVHVFDTVNQTWSQ-PVIKGSPPTPRD-------SHSCTTVGEN 96 (578)
Q Consensus 28 ~P~~R~ghs~v~v~~g~~Iyv~GG~~~---~~~~~~~v~~yD~~t~~W~~-l~~~g~~P~~R~-------~hs~~~~~~k 96 (578)
.|..+..|.. +-.+++.||+.-.+-. .....+.+.+||+.+.+-.. +. .| +.||. .++...-+..
T Consensus 43 i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~-~p--~~p~~~~~~~~~~~~ls~dgk~ 118 (352)
T TIGR02658 43 TDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIE-LP--EGPRFLVGTYPWMTSLTPDNKT 118 (352)
T ss_pred EEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEc-cC--CCchhhccCccceEEECCCCCE
Confidence 3444444543 6677889999887422 22245779999999887653 32 22 33342 1222222345
Q ss_pred EEEEcccCCCCCCCcEEEEECCCCeEEe-cccCCC---CCCCCcccEEEEECC-EEE---------------EEcc----
Q 008089 97 LYVFGGTDGMNPLRDLHILDTSSHTWIS-PSVRGE---GPEAREGHSAALVGK-RLF---------------IFGG---- 152 (578)
Q Consensus 97 IYv~GG~~~~~~~~~v~~yD~~t~~W~~-l~~~g~---~P~~R~~hs~~~~~~-~ly---------------vfGG---- 152 (578)
+|+.- ..+-+.+-+.|+.+.+-.. +++.+. .+.....+.+...++ .++ +|-+
T Consensus 119 l~V~n----~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~ 194 (352)
T TIGR02658 119 LLFYQ----FSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEY 194 (352)
T ss_pred EEEec----CCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccc
Confidence 77762 2335678889988877643 332110 111111111112222 222 2322
Q ss_pred --CCCCCCC-CCc----eeeceEEEEEcCc------ceEEEeccCCC----CCCCCCceeEEEeCCEEEE-E-ecCC-CC
Q 008089 153 --CGKSSNT-NDE----VYYNDLYILNTET------FVWKRATTSGN----PPSARDSHTCSSWKNKIIV-I-GGED-GH 212 (578)
Q Consensus 153 --~~~~~~~-~~~----~~~ndv~~yd~~t------~~W~~~~~~g~----~p~~R~~h~~~~~~~~lyV-~-GG~~-~~ 212 (578)
....... .+. .+...++..|+.. ..|..+..... .|......++..-++++|| . ||.. ..
T Consensus 195 v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~th 274 (352)
T TIGR02658 195 LINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTH 274 (352)
T ss_pred cccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccc
Confidence 0000000 011 1235677777432 34655532211 1222111222223688998 3 2221 11
Q ss_pred CcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeC--C-EEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 213 DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFG--K-NLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 213 ~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~--~-~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
....+.++++|+++.+ .+.. .+..+.-+.+++.. . .+|+.-+. .++|.++|..+.+
T Consensus 275 k~~~~~V~ViD~~t~k--vi~~---i~vG~~~~~iavS~Dgkp~lyvtn~~------s~~VsViD~~t~k 333 (352)
T TIGR02658 275 KTASRFLFVVDAKTGK--RLRK---IELGHEIDSINVSQDAKPLLYALSTG------DKTLYIFDAETGK 333 (352)
T ss_pred cCCCCEEEEEECCCCe--EEEE---EeCCCceeeEEECCCCCeEEEEeCCC------CCcEEEEECcCCe
Confidence 2234679999987754 3333 44445555555443 3 46665443 3569999998875
No 84
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=90.08 E-value=21 Score=35.29 Aligned_cols=180 Identities=15% Similarity=0.130 Sum_probs=94.0
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYIL 171 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~y 171 (578)
++.+|...- .-..++++|+.+..-..... +. -.+++.. ++++|+... ..+.++
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~----~~---~~G~~~~~~~g~l~v~~~-------------~~~~~~ 65 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDL----PG---PNGMAFDRPDGRLYVADS-------------GGIAVV 65 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEES----SS---EEEEEEECTTSEEEEEET-------------TCEEEE
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEec----CC---CceEEEEccCCEEEEEEc-------------CceEEE
Confidence 467777732 22579999999987765442 22 3344444 678888765 234566
Q ss_pred EcCcceEEEeccC--CCCCCCCCceeEEEeCCEEEEEecCCCCCccc--CceEEEECCCCceEEecCCCCCCCCCceeEE
Q 008089 172 NTETFVWKRATTS--GNPPSARDSHTCSSWKNKIIVIGGEDGHDYYL--SDVHILDTDTLTWKELNTSGMVLSPRAGHST 247 (578)
Q Consensus 172 d~~t~~W~~~~~~--g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~--~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~ 247 (578)
|+.+.+++.+... +..+..+..-.++.-++.||+-.-........ ..++++++. .+...+... ..+ -..+
T Consensus 66 d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~----~~~-pNGi 139 (246)
T PF08450_consen 66 DPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG----LGF-PNGI 139 (246)
T ss_dssp ETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE----ESS-EEEE
T ss_pred ecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC----ccc-ccce
Confidence 9999999887643 11122222233334477888854222111112 679999998 665555431 111 1233
Q ss_pred EEe-C-CEEEEEcCccCCCCccCcEEEEECCCC--cEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEE
Q 008089 248 VAF-G-KNLFVFGGFTDSQNLYDDLYMIDVDSG--LWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFI 312 (578)
Q Consensus 248 v~~-~-~~iyV~GG~~~~~~~~~dv~~ydi~t~--~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~ 312 (578)
+.. + +.||+.-- ..+.||+|++... .+.........+......-+.+++ .++.|||.
T Consensus 140 ~~s~dg~~lyv~ds------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD--~~G~l~va 200 (246)
T PF08450_consen 140 AFSPDGKTLYVADS------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD--SDGNLWVA 200 (246)
T ss_dssp EEETTSSEEEEEET------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB--TTS-EEEE
T ss_pred EECCcchheeeccc------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc--CCCCEEEE
Confidence 333 3 35776432 2345999998643 344322211111111223444553 46778886
No 85
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=89.94 E-value=28 Score=36.57 Aligned_cols=235 Identities=16% Similarity=0.141 Sum_probs=107.0
Q ss_pred EEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECC--CCeEEec
Q 008089 48 VFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTS--SHTWISP 125 (578)
Q Consensus 48 v~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~--t~~W~~l 125 (578)
++|++.......-.++.||..+.++..+........|.+ .....-++.||+..... .....+..|.+. +.+.+.+
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~-l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSW-LAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECC-EEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEEEEE
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCce-EEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcceeEEe
Confidence 457776532222335566668899987653221111111 11111256788886532 123445555544 4577655
Q ss_pred ccCCCCCCCCcccEEEEE---CCEEEEEccCCCCCCCCCceeeceEEEEEcCcc-eEEEec------cCCCC---CCCCC
Q 008089 126 SVRGEGPEAREGHSAALV---GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWKRAT------TSGNP---PSARD 192 (578)
Q Consensus 126 ~~~g~~P~~R~~hs~~~~---~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~-~W~~~~------~~g~~---p~~R~ 192 (578)
.. .+..-...+.+.+ +..||+.-- . ...+.+|++... .-.... ..++. ...-.
T Consensus 80 ~~---~~~~g~~p~~i~~~~~g~~l~vany-~----------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h 145 (345)
T PF10282_consen 80 NS---VPSGGSSPCHIAVDPDGRFLYVANY-G----------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPH 145 (345)
T ss_dssp EE---EEESSSCEEEEEECTTSSEEEEEET-T----------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTC
T ss_pred ee---eccCCCCcEEEEEecCCCEEEEEEc-c----------CCeEEEEEccCCcccceeeeecccCCCCCccccccccc
Confidence 42 2211112222333 345666421 0 234566666542 222210 01111 12233
Q ss_pred ceeEEEe--CCEEEEEecCCCCCcccCceEEEECCCCc--eEEecCCCCCCCC-CceeEEEEe-CCEEEEEcCccCCCCc
Q 008089 193 SHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSP-RAGHSTVAF-GKNLFVFGGFTDSQNL 266 (578)
Q Consensus 193 ~h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t~~--W~~v~~~g~~p~~-R~~hs~v~~-~~~iyV~GG~~~~~~~ 266 (578)
.|.+... ++.+|+..= -.+.|++|+..... ........ .+.. --.|.++.- +..+||..-.
T Consensus 146 ~H~v~~~pdg~~v~v~dl------G~D~v~~~~~~~~~~~l~~~~~~~-~~~G~GPRh~~f~pdg~~~Yv~~e~------ 212 (345)
T PF10282_consen 146 PHQVVFSPDGRFVYVPDL------GADRVYVYDIDDDTGKLTPVDSIK-VPPGSGPRHLAFSPDGKYAYVVNEL------ 212 (345)
T ss_dssp EEEEEE-TTSSEEEEEET------TTTEEEEEEE-TTS-TEEEEEEEE-CSTTSSEEEEEE-TTSSEEEEEETT------
T ss_pred ceeEEECCCCCEEEEEec------CCCEEEEEEEeCCCceEEEeeccc-cccCCCCcEEEEcCCcCEEEEecCC------
Confidence 4554444 346777531 13568888876654 55432211 1211 112333322 3578888754
Q ss_pred cCcEEEEECC--CCcEEEEEeCCCCCC---CceeeeEeeeeccCCCEEEEEc
Q 008089 267 YDDLYMIDVD--SGLWTKVITTGEGPS---ARFSVAGDCLDPLKGGVLVFIG 313 (578)
Q Consensus 267 ~~dv~~ydi~--t~~W~~l~~~~~~P~---~r~~~~~~~~~~~~~~~l~v~G 313 (578)
.+.|.+|+.. +..|+.+......|. ... ..+.+.....+..||+.-
T Consensus 213 s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~i~ispdg~~lyvsn 263 (345)
T PF10282_consen 213 SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN-APAEIAISPDGRFLYVSN 263 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEESCETTSCSSS-SEEEEEE-TTSSEEEEEE
T ss_pred CCcEEEEeecccCCceeEEEEeeeccccccccC-CceeEEEecCCCEEEEEe
Confidence 3456666666 777777665433332 221 233333345677888853
No 86
>PRK04043 tolB translocation protein TolB; Provisional
Probab=89.13 E-value=37 Score=36.89 Aligned_cols=150 Identities=13% Similarity=0.097 Sum_probs=81.7
Q ss_pred CcEEEEECCCCeEEecccCCCCCCCCcccEEEEECC-EEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCC
Q 008089 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (578)
Q Consensus 110 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p 188 (578)
.++|++|+.+.+=+.+.. .+ ..........++ +|++.-... -..++|++|+.+..++.+... +
T Consensus 213 ~~Iyv~dl~tg~~~~lt~---~~-g~~~~~~~SPDG~~la~~~~~~---------g~~~Iy~~dl~~g~~~~LT~~---~ 276 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIAS---SQ-GMLVVSDVSKDGSKLLLTMAPK---------GQPDIYLYDTNTKTLTQITNY---P 276 (419)
T ss_pred CEEEEEECCCCcEEEEec---CC-CcEEeeEECCCCCEEEEEEccC---------CCcEEEEEECCCCcEEEcccC---C
Confidence 379999988876555431 11 111111222233 454433210 136899999999999888532 1
Q ss_pred CCCCceeEEEeC-CEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCC-EEEEEcCccCCCC-
Q 008089 189 SARDSHTCSSWK-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGK-NLFVFGGFTDSQN- 265 (578)
Q Consensus 189 ~~R~~h~~~~~~-~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~-~iyV~GG~~~~~~- 265 (578)
. ........-+ .+|++.-...+ ..+|+++|+.+...+++...+. ... .+.-++ .|.+.........
T Consensus 277 ~-~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 277 G-IDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred C-ccCccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcCCCcccC
Confidence 1 1111122223 45666543321 2579999999998877755332 112 333344 4444433221111
Q ss_pred -ccCcEEEEECCCCcEEEEEeC
Q 008089 266 -LYDDLYMIDVDSGLWTKVITT 286 (578)
Q Consensus 266 -~~~dv~~ydi~t~~W~~l~~~ 286 (578)
...+++++|++++.++.|...
T Consensus 346 ~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 346 KNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred CCCcEEEEEECCCCCeEECCCC
Confidence 135799999999999888654
No 87
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.64 E-value=30 Score=35.12 Aligned_cols=200 Identities=17% Similarity=0.155 Sum_probs=106.5
Q ss_pred eEEE-ECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeece
Q 008089 89 SCTT-VGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYND 167 (578)
Q Consensus 89 s~~~-~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~nd 167 (578)
+... .++.+|.--|..+. +.+.++|+.+.+-.+.. ++|..-++=+++..+++||..-=. ...
T Consensus 49 GL~~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk-----------~~~ 111 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWK-----------EGT 111 (264)
T ss_dssp EEEEEETTEEEEEECSTTE---EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESS-----------SSE
T ss_pred cEEecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEec-----------CCe
Confidence 3444 57889998887665 46889999998765433 567777888999999999998542 355
Q ss_pred EEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEE
Q 008089 168 LYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHST 247 (578)
Q Consensus 168 v~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~ 247 (578)
.++||..+.+= +.. .+.+..+-.++..+..||+--| .+.++.+||++.+=..--. ....+..+
T Consensus 112 ~f~yd~~tl~~--~~~---~~y~~EGWGLt~dg~~Li~SDG-------S~~L~~~dP~~f~~~~~i~-----V~~~g~pv 174 (264)
T PF05096_consen 112 GFVYDPNTLKK--IGT---FPYPGEGWGLTSDGKRLIMSDG-------SSRLYFLDPETFKEVRTIQ-----VTDNGRPV 174 (264)
T ss_dssp EEEEETTTTEE--EEE---EE-SSS--EEEECSSCEEEE-S-------SSEEEEE-TTT-SEEEEEE------EETTEE-
T ss_pred EEEEccccceE--EEE---EecCCcceEEEcCCCEEEEECC-------ccceEEECCcccceEEEEE-----EEECCEEC
Confidence 78999986543 221 1223456677777778888766 2458899998754322111 00000011
Q ss_pred EEeCCEEEEEcCccCCCC-ccCcEEEEECCCCcEEEEEeCCC------CCCCc---eeeeEeeeeccCCCEEEEEccccC
Q 008089 248 VAFGKNLFVFGGFTDSQN-LYDDLYMIDVDSGLWTKVITTGE------GPSAR---FSVAGDCLDPLKGGVLVFIGGCNK 317 (578)
Q Consensus 248 v~~~~~iyV~GG~~~~~~-~~~dv~~ydi~t~~W~~l~~~~~------~P~~r---~~~~~~~~~~~~~~~l~v~GG~~~ 317 (578)
-.+ |.|=.++|.--.+- ..+.|.+.|++++.-...-.... ....+ ...-..++.....+++||-|
T Consensus 175 ~~L-NELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG---- 249 (264)
T PF05096_consen 175 SNL-NELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG---- 249 (264)
T ss_dssp --E-EEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE----
T ss_pred CCc-EeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe----
Confidence 111 22222344321122 25679999999997655433211 01111 12222223335677888877
Q ss_pred CCCccCcEEEEe
Q 008089 318 SLEALDDMYYLY 329 (578)
Q Consensus 318 ~~~~~~d~~~l~ 329 (578)
+....+|.+.
T Consensus 250 --K~Wp~lyeV~ 259 (264)
T PF05096_consen 250 --KLWPKLYEVK 259 (264)
T ss_dssp --TT-SEEEEEE
T ss_pred --CCCCceEEEE
Confidence 3344556543
No 88
>PRK04043 tolB translocation protein TolB; Provisional
Probab=88.39 E-value=42 Score=36.51 Aligned_cols=190 Identities=11% Similarity=0.088 Sum_probs=99.9
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECC-EEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCccc
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGE-NLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGH 138 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 138 (578)
.++|++|+.+++=+.+.. .+. ........-++ +|++.-..++ ..++|.+|+.+..++++... +. ....
T Consensus 213 ~~Iyv~dl~tg~~~~lt~---~~g-~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~~---~~-~d~~ 281 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIAS---SQG-MLVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITNY---PG-IDVN 281 (419)
T ss_pred CEEEEEECCCCcEEEEec---CCC-cEEeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcccC---CC-ccCc
Confidence 379999998887666541 111 11111122244 5554433322 35899999999988876521 11 1111
Q ss_pred EEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCc---
Q 008089 139 SAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDY--- 214 (578)
Q Consensus 139 s~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~--- 214 (578)
....- +.+||+.-... -..++|++|+.+...+++...+. ... ....+++.++|-.......
T Consensus 282 p~~SPDG~~I~F~Sdr~---------g~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~~~~~~~~ 346 (419)
T PRK04043 282 GNFVEDDKRIVFVSDRL---------GYPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRETNNEFGK 346 (419)
T ss_pred cEECCCCCEEEEEECCC---------CCceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcCCCcccCC
Confidence 11222 34566654321 13579999999999887764322 122 2333554444433322111
Q ss_pred ccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEE
Q 008089 215 YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (578)
Q Consensus 215 ~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l 283 (578)
...+++++|+++..++.+...+ ....-...-+++.++|-.... -...++.+++..+.=..+
T Consensus 347 ~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~~---~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 347 NTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYLG---NQSALGIIRLNYNKSFLF 407 (419)
T ss_pred CCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEccC---CcEEEEEEecCCCeeEEe
Confidence 1257999999999998886532 111122333444333332221 124588888877544444
No 89
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=88.09 E-value=31 Score=34.73 Aligned_cols=260 Identities=18% Similarity=0.239 Sum_probs=112.2
Q ss_pred CCEEE--EEcCCCCCCCCcccEEEEEcC-CCcEEEeeecCCC----CC-CCcceeEEEECCEEEEEccc--CCCCCCCcE
Q 008089 43 GRFLY--VFGGYGKDNCQTNQVHVFDTV-NQTWSQPVIKGSP----PT-PRDSHSCTTVGENLYVFGGT--DGMNPLRDL 112 (578)
Q Consensus 43 g~~Iy--v~GG~~~~~~~~~~v~~yD~~-t~~W~~l~~~g~~----P~-~R~~hs~~~~~~kIYv~GG~--~~~~~~~~v 112 (578)
++.|| ..+|.......+.-.|+-.-. .++|+.+....+. |. .-.++++.+++++||.+=-. -..+.+...
T Consensus 25 ~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~km~~~ 104 (367)
T PF12217_consen 25 DNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNKMVRA 104 (367)
T ss_dssp TTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--EEEE
T ss_pred cCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhhhhhhhhh
Confidence 44666 345544333344445665554 4689876643322 22 13456777889999877432 122344455
Q ss_pred EEEE---CCCCeEEecccCCCCCC-------CCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEE----EcCcceE
Q 008089 113 HILD---TSSHTWISPSVRGEGPE-------AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYIL----NTETFVW 178 (578)
Q Consensus 113 ~~yD---~~t~~W~~l~~~g~~P~-------~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~y----d~~t~~W 178 (578)
+.|+ ...+.|++.+.. ..|. .-.-|+.|.+++.-|.+|=...+ . ...-..-++.- ++....=
T Consensus 105 ~Lw~RpMF~~spW~~teL~-~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD--~-sPRe~G~~yfs~~~~sp~~~vr 180 (367)
T PF12217_consen 105 ELWSRPMFHDSPWRITELG-TIASFTSAGVAVTELHSFATIDDNQFAVGYHNGD--V-SPRELGFLYFSDAFASPGVFVR 180 (367)
T ss_dssp EEEEEE-STTS--EEEEEE-S-TT--------SEEEEEEE-SSS-EEEEEEE-S--S-SS-EEEEEEETTTTT-TT--EE
T ss_pred hhhcccccccCCceeeecc-cccccccccceeeeeeeeeEecCCceeEEeccCC--C-CcceeeEEEecccccCCcceee
Confidence 5565 457788764422 2222 44578888888877776632111 1 11111111111 1111222
Q ss_pred EEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeE---EEEeCCEEE
Q 008089 179 KRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHS---TVAFGKNLF 255 (578)
Q Consensus 179 ~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs---~v~~~~~iy 255 (578)
+.+.. .....-...+.-.+++.||+.--.......-..+++-+.....|..+.. | ....|+ .+..++.||
T Consensus 181 r~i~s--ey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrf----p-~nvHhtnlPFakvgD~l~ 253 (367)
T PF12217_consen 181 RIIPS--EYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRF----P-NNVHHTNLPFAKVGDVLY 253 (367)
T ss_dssp EE--G--GG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-----T-T---SS---EEEETTEEE
T ss_pred eechh--hhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccc----c-ccccccCCCceeeCCEEE
Confidence 23321 1111122234456799999975322222244557777888888999975 2 222233 567899999
Q ss_pred EEcCccCCCC---------c---cCcEEE-------EECCCCcEEEEEeC---CCCCCCceeeeEeeeeccCCCEE-EEE
Q 008089 256 VFGGFTDSQN---------L---YDDLYM-------IDVDSGLWTKVITT---GEGPSARFSVAGDCLDPLKGGVL-VFI 312 (578)
Q Consensus 256 V~GG~~~~~~---------~---~~dv~~-------ydi~t~~W~~l~~~---~~~P~~r~~~~~~~~~~~~~~~l-~v~ 312 (578)
+||-....++ + ....+. +.++.-.|..+... |.......+..++|+ .++.| |+|
T Consensus 254 mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~---KD~~lyy~F 330 (367)
T PF12217_consen 254 MFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVV---KDGWLYYIF 330 (367)
T ss_dssp EEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEE---ETTEEEEEE
T ss_pred EEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEE---ECCEEEEEe
Confidence 9995432111 0 111111 25556678777653 333344445555554 46655 578
Q ss_pred cccc
Q 008089 313 GGCN 316 (578)
Q Consensus 313 GG~~ 316 (578)
||.+
T Consensus 331 GgED 334 (367)
T PF12217_consen 331 GGED 334 (367)
T ss_dssp EEB-
T ss_pred cCcc
Confidence 8875
No 90
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=87.87 E-value=52 Score=36.98 Aligned_cols=210 Identities=19% Similarity=0.198 Sum_probs=103.6
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCC--cEEEeeecC-CC-C---CCCcceeEEEECCEEEEEcccCCCCCCCcEEEE
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKG-SP-P---TPRDSHSCTTVGENLYVFGGTDGMNPLRDLHIL 115 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g-~~-P---~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~y 115 (578)
++.||+.... +.++.+|..++ .|+.-.... .. + ......+.+..+++||+... + ..++++
T Consensus 69 ~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-d-----g~l~AL 135 (527)
T TIGR03075 69 DGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-D-----ARLVAL 135 (527)
T ss_pred CCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-C-----CEEEEE
Confidence 4568775432 35899999875 587522110 00 0 01122334566788887432 1 369999
Q ss_pred ECCCCe--EEecccCCCCCC-CCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcc--eEEEeccCCCC---
Q 008089 116 DTSSHT--WISPSVRGEGPE-AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNP--- 187 (578)
Q Consensus 116 D~~t~~--W~~l~~~g~~P~-~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~--~W~~~~~~g~~--- 187 (578)
|..|.+ |+.-. ..... .....+-++.++.||+-.... .......++.||.++. .|+.-......
T Consensus 136 Da~TGk~~W~~~~--~~~~~~~~~tssP~v~~g~Vivg~~~~------~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~ 207 (527)
T TIGR03075 136 DAKTGKVVWSKKN--GDYKAGYTITAAPLVVKGKVITGISGG------EFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYL 207 (527)
T ss_pred ECCCCCEEeeccc--ccccccccccCCcEEECCEEEEeeccc------ccCCCcEEEEEECCCCceeEeccCcCCCcccc
Confidence 998765 76422 11111 111223455678777743211 0112356888898875 46643321110
Q ss_pred ----------C------CCCCce-------eEEEe--CCEEEEEecC----C-----CCCcccCceEEEECCCCc--eEE
Q 008089 188 ----------P------SARDSH-------TCSSW--KNKIIVIGGE----D-----GHDYYLSDVHILDTDTLT--WKE 231 (578)
Q Consensus 188 ----------p------~~R~~h-------~~~~~--~~~lyV~GG~----~-----~~~~~~~di~~yD~~t~~--W~~ 231 (578)
+ .....+ ++++- .+.||+=-|. . +.+.+.+.+..+|++|.+ |..
T Consensus 208 ~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~ 287 (527)
T TIGR03075 208 DKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHY 287 (527)
T ss_pred cccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEee
Confidence 0 000111 12222 3456654332 1 234467789999998865 765
Q ss_pred ecCCCCCCCC--CceeEEEE--eCCE---EEEEcCccCCCCccCcEEEEECCCCc
Q 008089 232 LNTSGMVLSP--RAGHSTVA--FGKN---LFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 232 v~~~g~~p~~--R~~hs~v~--~~~~---iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
-....+.-.- -....++- .+++ +++.+..+. .+|++|..+++
T Consensus 288 Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G------~~~vlDr~tG~ 336 (527)
T TIGR03075 288 QTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNG------FFYVLDRTNGK 336 (527)
T ss_pred eCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCc------eEEEEECCCCc
Confidence 4432111100 01111222 2433 777776543 48888888874
No 91
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=87.59 E-value=31 Score=34.14 Aligned_cols=153 Identities=18% Similarity=0.247 Sum_probs=72.9
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEE
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHI 114 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~ 114 (578)
.....+++.+|+.++. .+.+++||..+.+....-..+ ..+ ..++.. ++.+|+.++.+ +.+.+
T Consensus 36 l~~~~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~--~~~---~~~~~~~~g~~l~~~~~~~-----~~l~~ 99 (300)
T TIGR03866 36 ITLSKDGKLLYVCASD------SDTIQVIDLATGEVIGTLPSG--PDP---ELFALHPNGKILYIANEDD-----NLVTV 99 (300)
T ss_pred eEECCCCCEEEEEECC------CCeEEEEECCCCcEEEeccCC--CCc---cEEEECCCCCEEEEEcCCC-----CeEEE
Confidence 3344556667777653 245889999887665421111 111 122222 34577765432 35899
Q ss_pred EECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCc
Q 008089 115 LDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (578)
Q Consensus 115 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~ 193 (578)
||+.+.+-... .+.....++++.. ++.+++++... .+.++.||..+..-......+. +..
T Consensus 100 ~d~~~~~~~~~-----~~~~~~~~~~~~~~dg~~l~~~~~~----------~~~~~~~d~~~~~~~~~~~~~~----~~~ 160 (300)
T TIGR03866 100 IDIETRKVLAE-----IPVGVEPEGMAVSPDGKIVVNTSET----------TNMAHFIDTKTYEIVDNVLVDQ----RPR 160 (300)
T ss_pred EECCCCeEEeE-----eeCCCCcceEEECCCCCEEEEEecC----------CCeEEEEeCCCCeEEEEEEcCC----Ccc
Confidence 99987653211 1111111233333 45566665421 1234556776554322111111 111
Q ss_pred eeEEEeCCEEEEEecCCCCCcccCceEEEECCCCce
Q 008089 194 HTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTW 229 (578)
Q Consensus 194 h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W 229 (578)
+.....+++.+++++... +.+.+||+++.+.
T Consensus 161 ~~~~s~dg~~l~~~~~~~-----~~v~i~d~~~~~~ 191 (300)
T TIGR03866 161 FAEFTADGKELWVSSEIG-----GTVSVIDVATRKV 191 (300)
T ss_pred EEEECCCCCEEEEEcCCC-----CEEEEEEcCccee
Confidence 222233555444444322 3488899887653
No 92
>PRK04922 tolB translocation protein TolB; Provisional
Probab=87.49 E-value=47 Score=36.08 Aligned_cols=184 Identities=14% Similarity=0.111 Sum_probs=92.0
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCccc
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGH 138 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 138 (578)
..+|++|..+++...+. ..+.... .....- +.+|++....++ ..++|++|+.+....++... .. ....
T Consensus 228 ~~l~~~dl~~g~~~~l~---~~~g~~~-~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~---~~-~~~~ 296 (433)
T PRK04922 228 SAIYVQDLATGQRELVA---SFRGING-APSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNH---FG-IDTE 296 (433)
T ss_pred cEEEEEECCCCCEEEec---cCCCCcc-CceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccC---CC-Cccc
Confidence 46899999888766653 2221111 111222 345654433222 24799999998877665421 11 1111
Q ss_pred EEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCcee-EEEeCC-EEEEEecCCCCCccc
Q 008089 139 SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT-CSSWKN-KIIVIGGEDGHDYYL 216 (578)
Q Consensus 139 s~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~-~~~~~~-~lyV~GG~~~~~~~~ 216 (578)
.....+++.++|..- ... ...+|++|..+..++.+...+ .+... ....++ .|++..+. +..
T Consensus 297 ~~~spDG~~l~f~sd-----~~g---~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~-~~~--- 359 (433)
T PRK04922 297 PTWAPDGKSIYFTSD-----RGG---RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHGS-GGQ--- 359 (433)
T ss_pred eEECCCCCEEEEEEC-----CCC---CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEECC-CCc---
Confidence 122224443444321 001 246899999888888775322 11111 222244 45554332 211
Q ss_pred CceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 217 SDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 217 ~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
..++++|+.+...+.+...+ ....-...-+++.+++...... ...++.+++....
T Consensus 360 ~~I~v~d~~~g~~~~Lt~~~-----~~~~p~~spdG~~i~~~s~~~g---~~~L~~~~~~g~~ 414 (433)
T PRK04922 360 YRIAVMDLSTGSVRTLTPGS-----LDESPSFAPNGSMVLYATREGG---RGVLAAVSTDGRV 414 (433)
T ss_pred eeEEEEECCCCCeEECCCCC-----CCCCceECCCCCEEEEEEecCC---ceEEEEEECCCCc
Confidence 26899999988888665321 1111123334555555433221 2458888886543
No 93
>PRK00178 tolB translocation protein TolB; Provisional
Probab=87.35 E-value=47 Score=35.89 Aligned_cols=146 Identities=10% Similarity=0.087 Sum_probs=77.2
Q ss_pred CcEEEEECCCCeEEecccCCCCCCCCcccEEEE-ECC-EEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCC
Q 008089 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAAL-VGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 187 (578)
Q Consensus 110 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~-~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~ 187 (578)
..+|++|+.+.+-+.+.. .+. ....... .++ +|++.... .+ ..++|++|+.+...+.+...
T Consensus 223 ~~l~~~~l~~g~~~~l~~---~~g--~~~~~~~SpDG~~la~~~~~------~g---~~~Iy~~d~~~~~~~~lt~~--- 285 (430)
T PRK00178 223 PRIFVQNLDTGRREQITN---FEG--LNGAPAWSPDGSKLAFVLSK------DG---NPEIYVMDLASRQLSRVTNH--- 285 (430)
T ss_pred CEEEEEECCCCCEEEccC---CCC--CcCCeEECCCCCEEEEEEcc------CC---CceEEEEECCCCCeEEcccC---
Confidence 479999999887766542 111 1111222 233 44433211 01 25799999999988877531
Q ss_pred CCCCCceeEEEeCC-EEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeC-CEEEEEcCccCCCC
Q 008089 188 PSARDSHTCSSWKN-KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFG-KNLFVFGGFTDSQN 265 (578)
Q Consensus 188 p~~R~~h~~~~~~~-~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~-~~iyV~GG~~~~~~ 265 (578)
+ ..........++ .|++.....+ ...++.+|+.+..++.+...+ .........-+ +.|++.... ..
T Consensus 286 ~-~~~~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~~-~~-- 353 (430)
T PRK00178 286 P-AIDTEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVHRQ-DG-- 353 (430)
T ss_pred C-CCcCCeEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEEcc-CC--
Confidence 1 111111222344 4544432221 246999999988888775422 11111122223 445444322 11
Q ss_pred ccCcEEEEECCCCcEEEEEe
Q 008089 266 LYDDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 266 ~~~dv~~ydi~t~~W~~l~~ 285 (578)
...++++|+.++.++.+..
T Consensus 354 -~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 354 -NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred -ceEEEEEECCCCCEEEccC
Confidence 2359999999998887754
No 94
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=86.72 E-value=46 Score=35.21 Aligned_cols=150 Identities=19% Similarity=0.265 Sum_probs=78.6
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCCc--EEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCC-
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQT--WSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSS- 119 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t- 119 (578)
+.+||+.. ....++.+|+.+.+ |...... -...........+++||+-. .++ .+++||..+
T Consensus 68 dg~v~~~~-------~~G~i~A~d~~~g~~~W~~~~~~---~~~~~~~~~~~~~G~i~~g~-~~g-----~~y~ld~~~G 131 (370)
T COG1520 68 DGTVYVGT-------RDGNIFALNPDTGLVKWSYPLLG---AVAQLSGPILGSDGKIYVGS-WDG-----KLYALDASTG 131 (370)
T ss_pred CCeEEEec-------CCCcEEEEeCCCCcEEecccCcC---cceeccCceEEeCCeEEEec-ccc-----eEEEEECCCC
Confidence 44687751 12269999999876 9763311 00111112222267766554 333 799999954
Q ss_pred -CeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCc--ceEEEeccCCCCCCCCCceeE
Q 008089 120 -HTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET--FVWKRATTSGNPPSARDSHTC 196 (578)
Q Consensus 120 -~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t--~~W~~~~~~g~~p~~R~~h~~ 196 (578)
..|.... .+ . .+..-..+..++.+|+--. .+.++.+|..+ ..|+.-...+ . ..+.....
T Consensus 132 ~~~W~~~~-~~--~-~~~~~~~v~~~~~v~~~s~------------~g~~~al~~~tG~~~W~~~~~~~-~-~~~~~~~~ 193 (370)
T COG1520 132 TLVWSRNV-GG--S-PYYASPPVVGDGTVYVGTD------------DGHLYALNADTGTLKWTYETPAP-L-SLSIYGSP 193 (370)
T ss_pred cEEEEEec-CC--C-eEEecCcEEcCcEEEEecC------------CCeEEEEEccCCcEEEEEecCCc-c-ccccccCc
Confidence 4687633 12 1 3344444444556665421 35577888774 4687544321 1 22222222
Q ss_pred EEeCCEEEEEecCCCCCcccCceEEEECCCC--ceEE
Q 008089 197 SSWKNKIIVIGGEDGHDYYLSDVHILDTDTL--TWKE 231 (578)
Q Consensus 197 ~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~--~W~~ 231 (578)
.+.++.+|+-.-. ....++.+|++++ .|..
T Consensus 194 ~~~~~~vy~~~~~-----~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 194 AIASGTVYVGSDG-----YDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred eeecceEEEecCC-----CcceEEEEEccCCcEeeee
Confidence 2456666664221 1225899998654 5774
No 95
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=86.53 E-value=31 Score=32.96 Aligned_cols=183 Identities=10% Similarity=0.064 Sum_probs=81.9
Q ss_pred EEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCCcEEEEECCCCeEEe
Q 008089 46 LYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWIS 124 (578)
Q Consensus 46 Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~ 124 (578)
.+++|+. ...+.+||..+......- . . ....-.++... ++++++.|+.+ ..+.+||+.+.+...
T Consensus 65 ~l~~~~~------~~~i~i~~~~~~~~~~~~-~-~--~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~ 129 (289)
T cd00200 65 YLASGSS------DKTIRLWDLETGECVRTL-T-G--HTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCLT 129 (289)
T ss_pred EEEEEcC------CCeEEEEEcCcccceEEE-e-c--cCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEEE
Confidence 5555654 245888988765332211 1 0 11111222222 34566666533 358889988654332
Q ss_pred cccCCCCCCCCcccEEEEEC-CEEEEEccCCCCCCCCCceeeceEEEEEcCcceE-EEeccCCCCCCCCCceeEEEe-CC
Q 008089 125 PSVRGEGPEAREGHSAALVG-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW-KRATTSGNPPSARDSHTCSSW-KN 201 (578)
Q Consensus 125 l~~~g~~P~~R~~hs~~~~~-~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W-~~~~~~g~~p~~R~~h~~~~~-~~ 201 (578)
.- . .....-.++.... +.+++.|+. ...+.+||+.+..- ..+.. . ...-.++... ++
T Consensus 130 ~~-~---~~~~~i~~~~~~~~~~~l~~~~~-----------~~~i~i~d~~~~~~~~~~~~----~-~~~i~~~~~~~~~ 189 (289)
T cd00200 130 TL-R---GHTDWVNSVAFSPDGTFVASSSQ-----------DGTIKLWDLRTGKCVATLTG----H-TGEVNSVAFSPDG 189 (289)
T ss_pred Ee-c---cCCCcEEEEEEcCcCCEEEEEcC-----------CCcEEEEEccccccceeEec----C-ccccceEEECCCc
Confidence 11 0 1111122333333 344444331 23577888764332 11211 0 1111222222 44
Q ss_pred EEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeC-CEEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 202 KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFG-KNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 202 ~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~-~~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
..+++++.+ +.+.+||+.+......-. .....-.++.... +.+++.++.. ..+.+||+.+..
T Consensus 190 ~~l~~~~~~------~~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~------~~i~i~~~~~~~ 252 (289)
T cd00200 190 EKLLSSSSD------GTIKLWDLSTGKCLGTLR----GHENGVNSVAFSPDGYLLASGSED------GTIRVWDLRTGE 252 (289)
T ss_pred CEEEEecCC------CcEEEEECCCCceecchh----hcCCceEEEEEcCCCcEEEEEcCC------CcEEEEEcCCce
Confidence 456666542 348889987643332211 1111222333334 4555555422 348899988643
No 96
>PRK04922 tolB translocation protein TolB; Provisional
Probab=84.91 E-value=63 Score=35.09 Aligned_cols=147 Identities=13% Similarity=0.115 Sum_probs=76.6
Q ss_pred CcEEEEECCCCeEEecccCCCCCCCCcccEEEEECC-EEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCC
Q 008089 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (578)
Q Consensus 110 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p 188 (578)
..+|++|+.+.+...+. ..+.. ........++ +|++..... + ..++|++|+.+...+.+... .
T Consensus 228 ~~l~~~dl~~g~~~~l~---~~~g~-~~~~~~SpDG~~l~~~~s~~------g---~~~Iy~~d~~~g~~~~lt~~---~ 291 (433)
T PRK04922 228 SAIYVQDLATGQRELVA---SFRGI-NGAPSFSPDGRRLALTLSRD------G---NPEIYVMDLGSRQLTRLTNH---F 291 (433)
T ss_pred cEEEEEECCCCCEEEec---cCCCC-ccCceECCCCCEEEEEEeCC------C---CceEEEEECCCCCeEECccC---C
Confidence 57999999888766553 11211 1111222234 454432211 1 25799999998887766421 1
Q ss_pred CCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeE-EEEe-CCEEEEEcCccCCCCc
Q 008089 189 SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHS-TVAF-GKNLFVFGGFTDSQNL 266 (578)
Q Consensus 189 ~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs-~v~~-~~~iyV~GG~~~~~~~ 266 (578)
.........-+++.++|...... ..++|.+|..+..++.+...+ ..... ...- ++.|++..+. ..
T Consensus 292 -~~~~~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~-~~--- 358 (433)
T PRK04922 292 -GIDTEPTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHGS-GG--- 358 (433)
T ss_pred -CCccceEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEECC-CC---
Confidence 11111122235554444332111 246999999888888775422 11112 2222 3455554432 11
Q ss_pred cCcEEEEECCCCcEEEEEe
Q 008089 267 YDDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 267 ~~dv~~ydi~t~~W~~l~~ 285 (578)
...++++|+.++.++.+..
T Consensus 359 ~~~I~v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 359 QYRIAVMDLSTGSVRTLTP 377 (433)
T ss_pred ceeEEEEECCCCCeEECCC
Confidence 1369999999988876643
No 97
>PRK13684 Ycf48-like protein; Provisional
Probab=84.80 E-value=55 Score=34.35 Aligned_cols=223 Identities=13% Similarity=0.121 Sum_probs=104.1
Q ss_pred EEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCc-ceeEEEECCEEEEEcccCCCCCCCcEEEEE
Q 008089 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRD-SHSCTTVGENLYVFGGTDGMNPLRDLHILD 116 (578)
Q Consensus 38 v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~-~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD 116 (578)
+.+.+.+..|++|-. ..+++=.-.-.+|++.... .|.... -.++...++..|+.|.. ..+++=+
T Consensus 51 v~F~d~~~g~avG~~-------G~il~T~DgG~tW~~~~~~--~~~~~~~l~~v~~~~~~~~~~G~~------g~i~~S~ 115 (334)
T PRK13684 51 IAFTDPNHGWLVGSN-------RTLLETNDGGETWEERSLD--LPEENFRLISISFKGDEGWIVGQP------SLLLHTT 115 (334)
T ss_pred EEEeCCCcEEEEECC-------CEEEEEcCCCCCceECccC--CcccccceeeeEEcCCcEEEeCCC------ceEEEEC
Confidence 444445557777742 1233322234689985421 221211 22333335556776531 2244432
Q ss_pred CCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCcee
Q 008089 117 TSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT 195 (578)
Q Consensus 117 ~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~ 195 (578)
-.-.+|+++......|. .......+ ++.+|+.|. ...+++-+-.-.+|+.+... ..-..+.
T Consensus 116 DgG~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~g~------------~G~i~~S~DgG~tW~~~~~~----~~g~~~~ 177 (334)
T PRK13684 116 DGGKNWTRIPLSEKLPG--SPYLITALGPGTAEMATN------------VGAIYRTTDGGKNWEALVED----AAGVVRN 177 (334)
T ss_pred CCCCCCeEccCCcCCCC--CceEEEEECCCcceeeec------------cceEEEECCCCCCceeCcCC----CcceEEE
Confidence 23358988653211222 12223333 345666554 23455555567899988632 2223344
Q ss_pred EEEeCCEEEEEecCCCCCcccCceEE-EECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEEEE
Q 008089 196 CSSWKNKIIVIGGEDGHDYYLSDVHI-LDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMI 273 (578)
Q Consensus 196 ~~~~~~~lyV~GG~~~~~~~~~di~~-yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~~y 273 (578)
+....+..++..|..+. ++. .|-...+|+.+.. +..+..++++.. ++.++++|... ..++
T Consensus 178 i~~~~~g~~v~~g~~G~------i~~s~~~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg~~G--------~~~~ 239 (334)
T PRK13684 178 LRRSPDGKYVAVSSRGN------FYSTWEPGQTAWTPHQR----NSSRRLQSMGFQPDGNLWMLARGG--------QIRF 239 (334)
T ss_pred EEECCCCeEEEEeCCce------EEEEcCCCCCeEEEeeC----CCcccceeeeEcCCCCEEEEecCC--------EEEE
Confidence 44444444444443322 222 2344567998853 333444444443 56788887532 2233
Q ss_pred --ECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccc
Q 008089 274 --DVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGC 315 (578)
Q Consensus 274 --di~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~ 315 (578)
+-.-..|+.+... . ....+...+..+ ..++.+++.|..
T Consensus 240 ~s~d~G~sW~~~~~~-~-~~~~~~l~~v~~--~~~~~~~~~G~~ 279 (334)
T PRK13684 240 NDPDDLESWSKPIIP-E-ITNGYGYLDLAY--RTPGEIWAGGGN 279 (334)
T ss_pred ccCCCCCccccccCC-c-cccccceeeEEE--cCCCCEEEEcCC
Confidence 2233489976431 1 112223332222 235667777643
No 98
>PTZ00421 coronin; Provisional
Probab=84.55 E-value=73 Score=35.51 Aligned_cols=154 Identities=12% Similarity=0.097 Sum_probs=71.8
Q ss_pred CEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEc
Q 008089 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (578)
Q Consensus 95 ~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~ 173 (578)
+.+++.||.++ .+.+||+.+.+-...- .+ ... .-.+++.. ++.+++.|+. ...+.+||+
T Consensus 138 ~~iLaSgs~Dg-----tVrIWDl~tg~~~~~l-~~-h~~--~V~sla~spdG~lLatgs~-----------Dg~IrIwD~ 197 (493)
T PTZ00421 138 MNVLASAGADM-----VVNVWDVERGKAVEVI-KC-HSD--QITSLEWNLDGSLLCTTSK-----------DKKLNIIDP 197 (493)
T ss_pred CCEEEEEeCCC-----EEEEEECCCCeEEEEE-cC-CCC--ceEEEEEECCCCEEEEecC-----------CCEEEEEEC
Confidence 45777777653 4788888876532211 11 011 11122222 4667777773 245778898
Q ss_pred CcceEE-EeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCce--EEecCCCCCCCCCceeEEEEe
Q 008089 174 ETFVWK-RATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTW--KELNTSGMVLSPRAGHSTVAF 250 (578)
Q Consensus 174 ~t~~W~-~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W--~~v~~~g~~p~~R~~hs~v~~ 250 (578)
.+..-. .+.. ....+........++..++..|.+.. .-..+.+||+.+..- ..... . ......+..+
T Consensus 198 rsg~~v~tl~~---H~~~~~~~~~w~~~~~~ivt~G~s~s--~Dr~VklWDlr~~~~p~~~~~~----d-~~~~~~~~~~ 267 (493)
T PTZ00421 198 RDGTIVSSVEA---HASAKSQRCLWAKRKDLIITLGCSKS--QQRQIMLWDTRKMASPYSTVDL----D-QSSALFIPFF 267 (493)
T ss_pred CCCcEEEEEec---CCCCcceEEEEcCCCCeEEEEecCCC--CCCeEEEEeCCCCCCceeEecc----C-CCCceEEEEE
Confidence 765421 2211 11111111111223334444443321 124588899865331 11110 0 0111122222
Q ss_pred --CCEEEEEcCccCCCCccCcEEEEECCCCcEEEE
Q 008089 251 --GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (578)
Q Consensus 251 --~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l 283 (578)
++.++++||..+ ..|.+||+.++.....
T Consensus 268 d~d~~~L~lggkgD-----g~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 268 DEDTNLLYIGSKGE-----GNIRCFELMNERLTFC 297 (493)
T ss_pred cCCCCEEEEEEeCC-----CeEEEEEeeCCceEEE
Confidence 455666776433 2388999988875554
No 99
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=84.41 E-value=63 Score=34.65 Aligned_cols=194 Identities=17% Similarity=0.168 Sum_probs=98.5
Q ss_pred cccEEEEEcCCCcEEEeeecCCCCCCCc-ceeE-EEECCE-EEEEcccCCCCCCCcEEEEECCCC-----eEEecccCCC
Q 008089 59 TNQVHVFDTVNQTWSQPVIKGSPPTPRD-SHSC-TTVGEN-LYVFGGTDGMNPLRDLHILDTSSH-----TWISPSVRGE 130 (578)
Q Consensus 59 ~~~v~~yD~~t~~W~~l~~~g~~P~~R~-~hs~-~~~~~k-IYv~GG~~~~~~~~~v~~yD~~t~-----~W~~l~~~g~ 130 (578)
...+++....+..-....+-.. +.... ...+ ..-+++ |+|.-.. +.. .+++|.+|.... .|..+..
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~-~~~~~~~~~~~~s~d~~~l~i~~~~-~~~-~s~v~~~d~~~~~~~~~~~~~l~~--- 274 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEE-PDEPFWFVSVSRSKDGRYLFISSSS-GTS-ESEVYLLDLDDGGSPDAKPKLLSP--- 274 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEES-SSS-EEEEEEEECCCTTTSS-SEEEEEE---
T ss_pred CcEEEEEECCCChHhCeeEEee-cCCCcEEEEEEecCcccEEEEEEEc-ccc-CCeEEEEeccccCCCcCCcEEEeC---
Confidence 5678888887765431111111 12222 2222 222444 3433322 222 478999999875 7877652
Q ss_pred CCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcce---EEEeccCCCCCCC-CCceeEEEeCCEEEEE
Q 008089 131 GPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV---WKRATTSGNPPSA-RDSHTCSSWKNKIIVI 206 (578)
Q Consensus 131 ~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~---W~~~~~~g~~p~~-R~~h~~~~~~~~lyV~ 206 (578)
...-..+.+...++.+|+.-.. ......+..+++.... |..+-. .+.. ..--.+...++.|++.
T Consensus 275 -~~~~~~~~v~~~~~~~yi~Tn~--------~a~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~~~~~~Lvl~ 342 (414)
T PF02897_consen 275 -REDGVEYYVDHHGDRLYILTND--------DAPNGRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVSLFKDYLVLS 342 (414)
T ss_dssp -SSSS-EEEEEEETTEEEEEE-T--------T-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEE
T ss_pred -CCCceEEEEEccCCEEEEeeCC--------CCCCcEEEEecccccccccceeEEc---CCCCceeEEEEEEECCEEEEE
Confidence 1112233344458899987652 1224567788887664 664321 1111 1223344568888876
Q ss_pred ecCCCCCcccCceEEEECC-CCceEEecCCCCCCCCCceeEEEEe----CCE-EEEEcCccCCCCccCcEEEEECCCCcE
Q 008089 207 GGEDGHDYYLSDVHILDTD-TLTWKELNTSGMVLSPRAGHSTVAF----GKN-LFVFGGFTDSQNLYDDLYMIDVDSGLW 280 (578)
Q Consensus 207 GG~~~~~~~~~di~~yD~~-t~~W~~v~~~g~~p~~R~~hs~v~~----~~~-iyV~GG~~~~~~~~~dv~~ydi~t~~W 280 (578)
-=.+ ....|.++|+. +..-..+.. |. .+...... .+. .|.+.++.. -..+|.||+.+++.
T Consensus 343 ~~~~----~~~~l~v~~~~~~~~~~~~~~----p~--~g~v~~~~~~~~~~~~~~~~ss~~~----P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 343 YREN----GSSRLRVYDLDDGKESREIPL----PE--AGSVSGVSGDFDSDELRFSYSSFTT----PPTVYRYDLATGEL 408 (414)
T ss_dssp EEET----TEEEEEEEETT-TEEEEEEES----SS--SSEEEEEES-TT-SEEEEEEEETTE----EEEEEEEETTTTCE
T ss_pred EEEC----CccEEEEEECCCCcEEeeecC----Cc--ceEEeccCCCCCCCEEEEEEeCCCC----CCEEEEEECCCCCE
Confidence 4322 24568999998 443333332 22 22111111 233 455556543 35699999999988
Q ss_pred EEEE
Q 008089 281 TKVI 284 (578)
Q Consensus 281 ~~l~ 284 (578)
+.+.
T Consensus 409 ~~~k 412 (414)
T PF02897_consen 409 TLLK 412 (414)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 100
>PRK03629 tolB translocation protein TolB; Provisional
Probab=84.25 E-value=67 Score=34.90 Aligned_cols=190 Identities=13% Similarity=0.084 Sum_probs=94.0
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECC-EEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCccc
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGE-NLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGH 138 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 138 (578)
..++++|..+++-+.+. ..+..-. .-...-++ +|++.....+ ..++|.+|+.+.+..++... .. ....
T Consensus 223 ~~i~i~dl~~G~~~~l~---~~~~~~~-~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~~---~~-~~~~ 291 (429)
T PRK03629 223 SALVIQTLANGAVRQVA---SFPRHNG-APAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDG---RS-NNTE 291 (429)
T ss_pred cEEEEEECCCCCeEEcc---CCCCCcC-CeEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccCC---CC-CcCc
Confidence 46899998887665543 1211111 11122244 4555433222 23699999998887765421 11 1111
Q ss_pred EEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCc
Q 008089 139 SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSD 218 (578)
Q Consensus 139 s~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~d 218 (578)
.....+++.++|.... . -...+|.+|+.+...+.+...+ ..........+++.+++.+.... ...
T Consensus 292 ~~wSPDG~~I~f~s~~------~--g~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g---~~~ 356 (429)
T PRK03629 292 PTWFPDSQNLAYTSDQ------A--GRPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGG---QQH 356 (429)
T ss_pred eEECCCCCEEEEEeCC------C--CCceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCC---Cce
Confidence 1122244444443310 0 0247889999887776664221 11112222335555555443322 236
Q ss_pred eEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEE
Q 008089 219 VHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (578)
Q Consensus 219 i~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l 283 (578)
++++|+++..++.+.... ....-...-+++.+++.+.... ...++++++....=..+
T Consensus 357 I~~~dl~~g~~~~Lt~~~-----~~~~p~~SpDG~~i~~~s~~~~---~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 357 IAKQDLATGGVQVLTDTF-----LDETPSIAPNGTMVIYSSSQGM---GSVLNLVSTDGRFKARL 413 (429)
T ss_pred EEEEECCCCCeEEeCCCC-----CCCCceECCCCCEEEEEEcCCC---ceEEEEEECCCCCeEEC
Confidence 899999999888776421 1111223345666666554322 23466777655443333
No 101
>PRK03629 tolB translocation protein TolB; Provisional
Probab=82.25 E-value=80 Score=34.30 Aligned_cols=149 Identities=11% Similarity=0.059 Sum_probs=76.6
Q ss_pred CcEEEEECCCCeEEecccCCCCCCCCcccEEEEECC-EEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCC
Q 008089 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (578)
Q Consensus 110 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p 188 (578)
..++++|+.+.+-+.+.. .+.. ...-....++ +|++..... . ..++|++|+.+...+.+... .
T Consensus 223 ~~i~i~dl~~G~~~~l~~---~~~~-~~~~~~SPDG~~La~~~~~~------g---~~~I~~~d~~tg~~~~lt~~---~ 286 (429)
T PRK03629 223 SALVIQTLANGAVRQVAS---FPRH-NGAPAFSPDGSKLAFALSKT------G---SLNLYVMDLASGQIRQVTDG---R 286 (429)
T ss_pred cEEEEEECCCCCeEEccC---CCCC-cCCeEECCCCCEEEEEEcCC------C---CcEEEEEECCCCCEEEccCC---C
Confidence 479999998876655431 1111 1111222234 455442210 0 23589999998888777432 1
Q ss_pred CCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccC
Q 008089 189 SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYD 268 (578)
Q Consensus 189 ~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~ 268 (578)
. ........-+++.++|...... ..++|.+|+.+...+.+...+ .........-+++.+++.+.... ..
T Consensus 287 ~-~~~~~~wSPDG~~I~f~s~~~g---~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g---~~ 355 (429)
T PRK03629 287 S-NNTEPTWFPDSQNLAYTSDQAG---RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGG---QQ 355 (429)
T ss_pred C-CcCceEECCCCCEEEEEeCCCC---CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCC---Cc
Confidence 1 1111122235554444432221 246899999887777664321 11111222234444444332221 24
Q ss_pred cEEEEECCCCcEEEEEe
Q 008089 269 DLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 269 dv~~ydi~t~~W~~l~~ 285 (578)
+++++|+.++.++.+..
T Consensus 356 ~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 356 HIAKQDLATGGVQVLTD 372 (429)
T ss_pred eEEEEECCCCCeEEeCC
Confidence 69999999999888764
No 102
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=81.75 E-value=42 Score=35.26 Aligned_cols=171 Identities=20% Similarity=0.243 Sum_probs=85.5
Q ss_pred CcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCc--EEEeeecCCCCCC-CcceeEEEE-CCEEEEEcccCCCC
Q 008089 32 RWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQT--WSQPVIKGSPPTP-RDSHSCTTV-GENLYVFGGTDGMN 107 (578)
Q Consensus 32 R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~-R~~hs~~~~-~~kIYv~GG~~~~~ 107 (578)
-.-|.+....+++++|+.-= -.+.+++|+..... ....... ..|.. --.|.+..- +..+||..-.
T Consensus 144 ~h~H~v~~~pdg~~v~v~dl------G~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~---- 212 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPDL------GADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNEL---- 212 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEET------TTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETT----
T ss_pred ccceeEEECCCCCEEEEEec------CCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCC----
Confidence 35688888888888887531 13568888887655 5442211 12221 112333332 3578998643
Q ss_pred CCCcEEEEECC--CCeEEecccCCCCCCC---C-cccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEc--Ccce
Q 008089 108 PLRDLHILDTS--SHTWISPSVRGEGPEA---R-EGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNT--ETFV 177 (578)
Q Consensus 108 ~~~~v~~yD~~--t~~W~~l~~~g~~P~~---R-~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~--~t~~ 177 (578)
.+.+.+|+.. +..++.++.....|.. . ..+.+++. +..||+--.- .+.+.+|++ .+..
T Consensus 213 -s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----------~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 213 -SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----------SNSISVFDLDPATGT 280 (345)
T ss_dssp -TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----------TTEEEEEEECTTTTT
T ss_pred -CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----------CCEEEEEEEecCCCc
Confidence 3456666655 6677655433233221 1 23333444 4568885431 456667776 4445
Q ss_pred EEEec---cCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEE--ECCCCceEEecC
Q 008089 178 WKRAT---TSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHIL--DTDTLTWKELNT 234 (578)
Q Consensus 178 W~~~~---~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~y--D~~t~~W~~v~~ 234 (578)
.+.+. ..+..| |. .++..-++.|||.+ ... +.+.+| |.+++.+..+..
T Consensus 281 l~~~~~~~~~G~~P--r~-~~~s~~g~~l~Va~-~~s-----~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 281 LTLVQTVPTGGKFP--RH-FAFSPDGRYLYVAN-QDS-----NTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEEEEEEEESSSSE--EE-EEE-TTSSEEEEEE-TTT-----TEEEEEEEETTTTEEEEEEE
T ss_pred eEEEEEEeCCCCCc--cE-EEEeCCCCEEEEEe-cCC-----CeEEEEEEeCCCCcEEEecc
Confidence 54443 222222 21 11112245566543 322 335554 678888888753
No 103
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=81.45 E-value=71 Score=33.17 Aligned_cols=227 Identities=15% Similarity=0.207 Sum_probs=94.5
Q ss_pred EEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEEC
Q 008089 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDT 117 (578)
Q Consensus 38 v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~ 117 (578)
+.+.+.+.-|++|-.+ .++.=+---.+|........-+......++...++..|++|-. .-++.-.-
T Consensus 22 V~F~d~~~G~~VG~~g-------~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~------g~ll~T~D 88 (302)
T PF14870_consen 22 VAFVDPNHGWAVGAYG-------TILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP------GLLLHTTD 88 (302)
T ss_dssp EEESSSS-EEEEETTT-------EEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEET------TEEEEESS
T ss_pred EEEecCCEEEEEecCC-------EEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCC------ceEEEecC
Confidence 3444556788887531 1222222245899865222212112233444567889998742 11333333
Q ss_pred CCCeEEecccCCCCCCCCcccEEEE-ECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeE
Q 008089 118 SSHTWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTC 196 (578)
Q Consensus 118 ~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~ 196 (578)
.-.+|++++....+|. ..+.... -++.++++|.. ..+|+-.-.-.+|+.+... . .......
T Consensus 89 gG~tW~~v~l~~~lpg--s~~~i~~l~~~~~~l~~~~------------G~iy~T~DgG~tW~~~~~~---~-~gs~~~~ 150 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPG--SPFGITALGDGSAELAGDR------------GAIYRTTDGGKTWQAVVSE---T-SGSINDI 150 (302)
T ss_dssp TTSS-EE----TT-SS---EEEEEEEETTEEEEEETT--------------EEEESSTTSSEEEEE-S--------EEEE
T ss_pred CCCCcEEeecCCCCCC--CeeEEEEcCCCcEEEEcCC------------CcEEEeCCCCCCeeEcccC---C-cceeEeE
Confidence 4568998764333332 2233333 45677777652 3455655567899987532 1 1111222
Q ss_pred EEe-CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEE-EeCCEEEEEcCccCCCCccCcEEEEE
Q 008089 197 SSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV-AFGKNLFVFGGFTDSQNLYDDLYMID 274 (578)
Q Consensus 197 ~~~-~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v-~~~~~iyV~GG~~~~~~~~~dv~~yd 274 (578)
... ++++++++- .+.- +...|+-...|..... +..|+--++. .-++.|+++. . .. .+.+-+
T Consensus 151 ~r~~dG~~vavs~-~G~~-----~~s~~~G~~~w~~~~r----~~~~riq~~gf~~~~~lw~~~-~-Gg-----~~~~s~ 213 (302)
T PF14870_consen 151 TRSSDGRYVAVSS-RGNF-----YSSWDPGQTTWQPHNR----NSSRRIQSMGFSPDGNLWMLA-R-GG-----QIQFSD 213 (302)
T ss_dssp EE-TTS-EEEEET-TSSE-----EEEE-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-T-TT-----EEEEEE
T ss_pred EECCCCcEEEEEC-cccE-----EEEecCCCccceEEcc----CccceehhceecCCCCEEEEe-C-Cc-----EEEEcc
Confidence 222 566555553 2221 3356777778998875 3344444444 3455676654 1 11 134444
Q ss_pred --CCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEcccc
Q 008089 275 --VDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCN 316 (578)
Q Consensus 275 --i~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~ 316 (578)
-....|.+... +.....+.+..... ...+.+++.||..
T Consensus 214 ~~~~~~~w~~~~~--~~~~~~~~~ld~a~--~~~~~~wa~gg~G 253 (302)
T PF14870_consen 214 DPDDGETWSEPII--PIKTNGYGILDLAY--RPPNEIWAVGGSG 253 (302)
T ss_dssp -TTEEEEE---B---TTSS--S-EEEEEE--SSSS-EEEEESTT
T ss_pred CCCCccccccccC--CcccCceeeEEEEe--cCCCCEEEEeCCc
Confidence 33446776221 11223333332222 4568888888864
No 104
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=81.37 E-value=38 Score=29.99 Aligned_cols=86 Identities=12% Similarity=0.103 Sum_probs=56.6
Q ss_pred EECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEE
Q 008089 92 TVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYIL 171 (578)
Q Consensus 92 ~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~y 171 (578)
.++|-+|-..-. .....+.+.+||+.+.+|+.++..............+.++++|-++.-.... ....-++|++
T Consensus 3 cinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~-----~~~~~~iWvL 76 (129)
T PF08268_consen 3 CINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQG-----EPDSIDIWVL 76 (129)
T ss_pred EECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCC-----CcceEEEEEe
Confidence 467777766554 3344578999999999998876432234555667778888998876552111 1124577887
Q ss_pred -EcCcceEEEecc
Q 008089 172 -NTETFVWKRATT 183 (578)
Q Consensus 172 -d~~t~~W~~~~~ 183 (578)
|....+|.+...
T Consensus 77 eD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 77 EDYEKQEWSKKHI 89 (129)
T ss_pred eccccceEEEEEE
Confidence 466789987754
No 105
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=81.24 E-value=71 Score=32.99 Aligned_cols=147 Identities=21% Similarity=0.281 Sum_probs=80.8
Q ss_pred eeEEEECCEEEEEcccC-------C----------CCCCCcEEEEECCCCe----EEecccCCCCCCCCcccEEE---E-
Q 008089 88 HSCTTVGENLYVFGGTD-------G----------MNPLRDLHILDTSSHT----WISPSVRGEGPEAREGHSAA---L- 142 (578)
Q Consensus 88 hs~~~~~~kIYv~GG~~-------~----------~~~~~~v~~yD~~t~~----W~~l~~~g~~P~~R~~hs~~---~- 142 (578)
.++..+++.|| |||+- + .+.++.++.||+.+.+ |.. ..-.++.-.+-+ +
T Consensus 40 NAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWke-----sih~~~~WaGEVSdIlY 113 (339)
T PF09910_consen 40 NAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKE-----SIHDKTKWAGEVSDILY 113 (339)
T ss_pred eeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEec-----ccCCccccccchhheee
Confidence 44555677666 67761 1 1235789999998876 543 111112211111 1
Q ss_pred --ECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceE
Q 008089 143 --VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVH 220 (578)
Q Consensus 143 --~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~ 220 (578)
++++||+.-+ +....-.+|..|.++..-+.+... |.. -.+.+.+..+| |.+.-..-.+.++
T Consensus 114 dP~~D~LLlAR~--------DGh~nLGvy~ldr~~g~~~~L~~~---ps~---KG~~~~D~a~F---~i~~~~~g~~~i~ 176 (339)
T PF09910_consen 114 DPYEDRLLLARA--------DGHANLGVYSLDRRTGKAEKLSSN---PSL---KGTLVHDYACF---GINNFHKGVSGIH 176 (339)
T ss_pred CCCcCEEEEEec--------CCcceeeeEEEcccCCceeeccCC---CCc---CceEeeeeEEE---eccccccCCceEE
Confidence 2578888755 222345789999999988888632 222 12333333333 2222222356799
Q ss_pred EEECCCCce--EEecCC----CCCCCCCceeEEEEeCCEEEEE
Q 008089 221 ILDTDTLTW--KELNTS----GMVLSPRAGHSTVAFGKNLFVF 257 (578)
Q Consensus 221 ~yD~~t~~W--~~v~~~----g~~p~~R~~hs~v~~~~~iyV~ 257 (578)
+||+.+++| +..... |.....|..-.++...+++|.|
T Consensus 177 ~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 177 CLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred EEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 999999999 333221 2222334444566666765554
No 106
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=80.84 E-value=84 Score=33.63 Aligned_cols=189 Identities=14% Similarity=0.081 Sum_probs=98.6
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCC------CCcEEEEECCCCeEEecccCCCCC
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNP------LRDLHILDTSSHTWISPSVRGEGP 132 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~------~~~v~~yD~~t~~W~~l~~~g~~P 132 (578)
..++++|+.+++...-. ++...... ++-. +++.+++...+.... -..++++.+.+..-.-..+. ..+
T Consensus 150 ~~l~v~Dl~tg~~l~d~----i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvf-e~~ 223 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPDG----IENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVF-EEP 223 (414)
T ss_dssp EEEEEEETTTTEEEEEE----EEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEE-C-T
T ss_pred EEEEEEECCCCcCcCCc----ccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEE-eec
Confidence 46899999998654321 12222221 3333 445555555544322 57899998877643200110 112
Q ss_pred CCCc-ccEEEEE-CCE-EEEEccCCCCCCCCCceeeceEEEEEcCcc-----eEEEeccCCCCCCCCCceeEEEeCCEEE
Q 008089 133 EARE-GHSAALV-GKR-LFIFGGCGKSSNTNDEVYYNDLYILNTETF-----VWKRATTSGNPPSARDSHTCSSWKNKII 204 (578)
Q Consensus 133 ~~R~-~hs~~~~-~~~-lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~-----~W~~~~~~g~~p~~R~~h~~~~~~~~ly 204 (578)
.... ...+..- +++ |+|.-.. ... .+++|.++.... .|..+.. +..-..+.+...++.+|
T Consensus 224 ~~~~~~~~~~~s~d~~~l~i~~~~-------~~~-~s~v~~~d~~~~~~~~~~~~~l~~----~~~~~~~~v~~~~~~~y 291 (414)
T PF02897_consen 224 DEPFWFVSVSRSKDGRYLFISSSS-------GTS-ESEVYLLDLDDGGSPDAKPKLLSP----REDGVEYYVDHHGDRLY 291 (414)
T ss_dssp TCTTSEEEEEE-TTSSEEEEEEES-------SSS-EEEEEEEECCCTTTSS-SEEEEEE----SSSS-EEEEEEETTEEE
T ss_pred CCCcEEEEEEecCcccEEEEEEEc-------ccc-CCeEEEEeccccCCCcCCcEEEeC----CCCceEEEEEccCCEEE
Confidence 2222 2222222 333 4443331 111 488999999875 8888853 12222333444588999
Q ss_pred EEecCCCCCcccCceEEEECCCCc---eEEecCCCCCCCC-CceeEEEEeCCEEEEEcCccCCCCccCcEEEEECC
Q 008089 205 VIGGEDGHDYYLSDVHILDTDTLT---WKELNTSGMVLSP-RAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVD 276 (578)
Q Consensus 205 V~GG~~~~~~~~~di~~yD~~t~~---W~~v~~~g~~p~~-R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~ 276 (578)
+.-..+. ....|..+++.... |..+-. .+.. ..--.+...++.|++.-=.+ ....|.++|+.
T Consensus 292 i~Tn~~a---~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~~~~~~Lvl~~~~~----~~~~l~v~~~~ 357 (414)
T PF02897_consen 292 ILTNDDA---PNGRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVSLFKDYLVLSYREN----GSSRLRVYDLD 357 (414)
T ss_dssp EEE-TT----TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEET----TEEEEEEEETT
T ss_pred EeeCCCC---CCcEEEEecccccccccceeEEc---CCCCceeEEEEEEECCEEEEEEEEC----CccEEEEEECC
Confidence 9865332 34568888887664 674332 2222 23444556788887765332 24569999999
No 107
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=80.67 E-value=67 Score=32.37 Aligned_cols=189 Identities=15% Similarity=0.101 Sum_probs=100.2
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECC-----CCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTS-----SHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDL 168 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~-----t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv 168 (578)
.+++|++.|..+. .++.|... .+...+. -.+|.+-.|.+.++.++.+|.--. -.+.|
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~---~~Lp~~~~GtG~vVYngslYY~~~-----------~s~~I 91 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRT---YKLPYPWQGTGHVVYNGSLYYNKY-----------NSRNI 91 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceE---EEEeceeccCCeEEECCcEEEEec-----------CCceE
Confidence 4678999886544 45555422 1222111 135666778888889988887433 25789
Q ss_pred EEEEcCcceEE---EeccCCC---CCCCCCcee---EEEeCCEEEEEecCCCCCcccCceEEEECCCC----ceEEecCC
Q 008089 169 YILNTETFVWK---RATTSGN---PPSARDSHT---CSSWKNKIIVIGGEDGHDYYLSDVHILDTDTL----TWKELNTS 235 (578)
Q Consensus 169 ~~yd~~t~~W~---~~~~~g~---~p~~R~~h~---~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~----~W~~v~~~ 235 (578)
.+||+.+..-. .++..+. .|....+++ .++-++-|+|+=...... -.--+-.+|+.+. +|..-
T Consensus 92 vkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~-g~ivvskld~~tL~v~~tw~T~--- 167 (250)
T PF02191_consen 92 VKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN-GNIVVSKLDPETLSVEQTWNTS--- 167 (250)
T ss_pred EEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC-CcEEEEeeCcccCceEEEEEec---
Confidence 99999987654 3432211 122222222 223344455553322211 0012445566544 35421
Q ss_pred CCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEE
Q 008089 236 GMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFI 312 (578)
Q Consensus 236 g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~ 312 (578)
.+. +....++++-+.||++....... ..=.+.||..+++=..+... -..++.....+-..+.++.||+.
T Consensus 168 --~~k-~~~~naFmvCGvLY~~~s~~~~~--~~I~yafDt~t~~~~~~~i~---f~~~~~~~~~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 168 --YPK-RSAGNAFMVCGVLYATDSYDTRD--TEIFYAFDTYTGKEEDVSIP---FPNPYGNISMLSYNPRDKKLYAW 236 (250)
T ss_pred --cCc-hhhcceeeEeeEEEEEEECCCCC--cEEEEEEECCCCceeceeee---eccccCceEeeeECCCCCeEEEE
Confidence 222 22233667778899988765432 22258899998876554432 12233333333344667788875
No 108
>PRK02889 tolB translocation protein TolB; Provisional
Probab=79.73 E-value=96 Score=33.61 Aligned_cols=148 Identities=13% Similarity=0.064 Sum_probs=74.4
Q ss_pred CcEEEEECCCCeEEecccCCCCCCCCcccEEEEECC-EEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCC
Q 008089 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (578)
Q Consensus 110 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p 188 (578)
..+|++|+.+.+=..+. ..+.. ........++ +|++..... -..++|.+|..+...+.+... .
T Consensus 220 ~~I~~~dl~~g~~~~l~---~~~g~-~~~~~~SPDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~lt~~---~ 283 (427)
T PRK02889 220 PVVYVHDLATGRRRVVA---NFKGS-NSAPAWSPDGRTLAVALSRD---------GNSQIYTVNADGSGLRRLTQS---S 283 (427)
T ss_pred cEEEEEECCCCCEEEee---cCCCC-ccceEECCCCCEEEEEEccC---------CCceEEEEECCCCCcEECCCC---C
Confidence 46999999887654443 11111 1112222234 454433211 136789999888777666421 1
Q ss_pred CCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCC-EEEEEcCccCCCCcc
Q 008089 189 SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGK-NLFVFGGFTDSQNLY 267 (578)
Q Consensus 189 ~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~-~iyV~GG~~~~~~~~ 267 (578)
.........-+++.++|...... ..++|.++..+...+.+...+. ......+.-++ .|+..... .. .
T Consensus 284 -~~~~~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt~~g~----~~~~~~~SpDG~~Ia~~s~~-~g---~ 351 (427)
T PRK02889 284 -GIDTEPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVTFTGS----YNTSPRISPDGKLLAYISRV-GG---A 351 (427)
T ss_pred -CCCcCeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEecCCC----CcCceEECCCCCEEEEEEcc-CC---c
Confidence 11112222335554444332211 2468889988887777753221 11111222234 44433322 11 1
Q ss_pred CcEEEEECCCCcEEEEEe
Q 008089 268 DDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 268 ~dv~~ydi~t~~W~~l~~ 285 (578)
..|+++|+.+...+.+..
T Consensus 352 ~~I~v~d~~~g~~~~lt~ 369 (427)
T PRK02889 352 FKLYVQDLATGQVTALTD 369 (427)
T ss_pred EEEEEEECCCCCeEEccC
Confidence 269999999988877653
No 109
>PLN00181 protein SPA1-RELATED; Provisional
Probab=79.46 E-value=1.4e+02 Score=35.29 Aligned_cols=139 Identities=11% Similarity=0.126 Sum_probs=67.6
Q ss_pred CEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEE
Q 008089 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (578)
Q Consensus 95 ~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd 172 (578)
+..++.|+.++ .+.+||..+.+....- .+ ....-.+++.. ++.+++.||. -..+.+||
T Consensus 545 ~~~las~~~Dg-----~v~lWd~~~~~~~~~~-~~---H~~~V~~l~~~p~~~~~L~Sgs~-----------Dg~v~iWd 604 (793)
T PLN00181 545 KSQVASSNFEG-----VVQVWDVARSQLVTEM-KE---HEKRVWSIDYSSADPTLLASGSD-----------DGSVKLWS 604 (793)
T ss_pred CCEEEEEeCCC-----eEEEEECCCCeEEEEe-cC---CCCCEEEEEEcCCCCCEEEEEcC-----------CCEEEEEE
Confidence 44556666543 4788888776543211 11 11112233332 3567777773 23467778
Q ss_pred cCcceE-EEeccCCCCCCCCCceeEEEe---CCEEEEEecCCCCCcccCceEEEECCCCc--eEEecCCCCCCCCCceeE
Q 008089 173 TETFVW-KRATTSGNPPSARDSHTCSSW---KNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHS 246 (578)
Q Consensus 173 ~~t~~W-~~~~~~g~~p~~R~~h~~~~~---~~~lyV~GG~~~~~~~~~di~~yD~~t~~--W~~v~~~g~~p~~R~~hs 246 (578)
+.+..- ..+.. .....++.+ ++.+++.|+.++ .+.+||+.+.. ...+.. ....-..
T Consensus 605 ~~~~~~~~~~~~-------~~~v~~v~~~~~~g~~latgs~dg------~I~iwD~~~~~~~~~~~~~-----h~~~V~~ 666 (793)
T PLN00181 605 INQGVSIGTIKT-------KANICCVQFPSESGRSLAFGSADH------KVYYYDLRNPKLPLCTMIG-----HSKTVSY 666 (793)
T ss_pred CCCCcEEEEEec-------CCCeEEEEEeCCCCCEEEEEeCCC------eEEEEECCCCCccceEecC-----CCCCEEE
Confidence 765432 22211 111122222 467788887553 48889986542 111111 0001112
Q ss_pred EEEeCCEEEEEcCccCCCCccCcEEEEECCC
Q 008089 247 TVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (578)
Q Consensus 247 ~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t 277 (578)
+...++..++.|+.+. .|.+||+..
T Consensus 667 v~f~~~~~lvs~s~D~------~ikiWd~~~ 691 (793)
T PLN00181 667 VRFVDSSTLVSSSTDN------TLKLWDLSM 691 (793)
T ss_pred EEEeCCCEEEEEECCC------EEEEEeCCC
Confidence 2223556666666532 377888764
No 110
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=77.94 E-value=1.5e+02 Score=34.92 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=22.3
Q ss_pred eeEEEECCEEEEEcccCCCCCCCcEEEEECCCC--eEEe
Q 008089 88 HSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH--TWIS 124 (578)
Q Consensus 88 hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~--~W~~ 124 (578)
.+-+.++++||+... .+.++.+|..|. .|+.
T Consensus 188 ~TPlvvgg~lYv~t~------~~~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP------HNKVIALDAATGKEKWKF 220 (764)
T ss_pred cCCEEECCEEEEECC------CCeEEEEECCCCcEEEEE
Confidence 444567999999854 256888888875 4865
No 111
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=77.68 E-value=78 Score=32.68 Aligned_cols=122 Identities=16% Similarity=0.125 Sum_probs=70.2
Q ss_pred CcEEEEECCCC-----eEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcce-EEEecc
Q 008089 110 RDLHILDTSSH-----TWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV-WKRATT 183 (578)
Q Consensus 110 ~~v~~yD~~t~-----~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~-W~~~~~ 183 (578)
..+++|+.... +++.+... ..+ -.-.+++.++++|.+.-| +.+++|++.... +.....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~--g~V~ai~~~~~~lv~~~g-------------~~l~v~~l~~~~~l~~~~~ 125 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST-EVK--GPVTAICSFNGRLVVAVG-------------NKLYVYDLDNSKTLLKKAF 125 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE-EES--S-EEEEEEETTEEEEEET-------------TEEEEEEEETTSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEE-eec--CcceEhhhhCCEEEEeec-------------CEEEEEEccCcccchhhhe
Confidence 67999998884 55443211 111 124567777899777666 567788887777 777753
Q ss_pred CCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcC
Q 008089 184 SGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGG 259 (578)
Q Consensus 184 ~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG 259 (578)
. ..+-...++.+.++.|+| |-.... -.++.|+.+..+...+.. -..++...++..+ ++. .++++
T Consensus 126 ~---~~~~~i~sl~~~~~~I~v-gD~~~s----v~~~~~~~~~~~l~~va~---d~~~~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 126 Y---DSPFYITSLSVFKNYILV-GDAMKS----VSLLRYDEENNKLILVAR---DYQPRWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp E----BSSSEEEEEEETTEEEE-EESSSS----EEEEEEETTTE-EEEEEE---ESS-BEEEEEEEE-SSS-EEEEE
T ss_pred e---cceEEEEEEeccccEEEE-EEcccC----EEEEEEEccCCEEEEEEe---cCCCccEEEEEEecCCc-EEEEE
Confidence 3 222245556667886655 432211 124566876766777765 4456766666666 544 44444
No 112
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=76.55 E-value=1.2e+02 Score=32.88 Aligned_cols=114 Identities=15% Similarity=0.182 Sum_probs=58.0
Q ss_pred cCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCC--cceeEEEECCEEEEEcccCCCCCCCcEEEEECC
Q 008089 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPR--DSHSCTTVGENLYVFGGTDGMNPLRDLHILDTS 118 (578)
Q Consensus 41 ~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R--~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~ 118 (578)
.+.+.-+++|-++ .+..=+-.-.+|.+..........+ ...++...++..|++|-. ..++.=.-.
T Consensus 98 ~d~~~GwAVG~~G-------~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~------G~il~T~Dg 164 (398)
T PLN00033 98 DDPTHGFLLGTRQ-------TLLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP------AILLHTSDG 164 (398)
T ss_pred CCCCEEEEEcCCC-------EEEEEcCCCCCceECccCcccccccccceeeeEEECCEEEEEcCc------eEEEEEcCC
Confidence 4455677877642 1333223356898753211111111 234445567788888632 123332223
Q ss_pred CCeEEecccCCCCCCCCcccEEEEEC-CEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEe
Q 008089 119 SHTWISPSVRGEGPEAREGHSAALVG-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRA 181 (578)
Q Consensus 119 t~~W~~l~~~g~~P~~R~~hs~~~~~-~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~ 181 (578)
-.+|+.+.....+|.. .+....++ +.+++.|.. ..+++-+-...+|+.+
T Consensus 165 G~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~------------G~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 165 GETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE------------GAIYVTSNAGRNWKAA 214 (398)
T ss_pred CCCceECccccCCCCC--ceEEEEECCCceEEEecc------------ceEEEECCCCCCceEc
Confidence 4689887643223333 23333343 457777752 2355655566799986
No 113
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=76.21 E-value=91 Score=31.43 Aligned_cols=187 Identities=18% Similarity=0.198 Sum_probs=98.7
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcC-----CCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEEC
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTV-----NQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDT 117 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~-----t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~ 117 (578)
.++||++.|.... .++.|... .+...+. -.+|.+-.|.+.++.++.+|.--. ..+.+.+||+
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~---~~Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL 96 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRT---YKLPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDL 96 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceE---EEEeceeccCCeEEECCcEEEEec-----CCceEEEEEC
Confidence 4568888886443 34544432 1222221 145667778888888988887643 3478999999
Q ss_pred CCCeEE---ecccCCC---CCCCCccc---EEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCc----ceEEEeccC
Q 008089 118 SSHTWI---SPSVRGE---GPEAREGH---SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET----FVWKRATTS 184 (578)
Q Consensus 118 ~t~~W~---~l~~~g~---~P~~R~~h---s~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t----~~W~~~~~~ 184 (578)
.+..-. .++-.+. .|....++ -.++.++-|+|+=..... .+. --+-++|+.+ .+|..-
T Consensus 97 ~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~---~g~---ivvskld~~tL~v~~tw~T~--- 167 (250)
T PF02191_consen 97 TTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN---NGN---IVVSKLDPETLSVEQTWNTS--- 167 (250)
T ss_pred cCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC---CCc---EEEEeeCcccCceEEEEEec---
Confidence 987654 3321111 11111122 223344567776442211 111 2234556654 355421
Q ss_pred CCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe---CCEEEEEc
Q 008089 185 GNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF---GKNLFVFG 258 (578)
Q Consensus 185 g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~---~~~iyV~G 258 (578)
.+ .+....+.++-|.||++....... ..-.+.||+.+++=..+.. ..+.+-..++++.. +.+||+.-
T Consensus 168 --~~-k~~~~naFmvCGvLY~~~s~~~~~--~~I~yafDt~t~~~~~~~i--~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 168 --YP-KRSAGNAFMVCGVLYATDSYDTRD--TEIFYAFDTYTGKEEDVSI--PFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred --cC-chhhcceeeEeeEEEEEEECCCCC--cEEEEEEECCCCceeceee--eeccccCceEeeeECCCCCeEEEEE
Confidence 22 233334556678899987655432 2336889998877665543 12222334445544 35677653
No 114
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=75.40 E-value=1.3e+02 Score=32.86 Aligned_cols=175 Identities=16% Similarity=0.196 Sum_probs=85.9
Q ss_pred EECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEE
Q 008089 92 TVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYIL 171 (578)
Q Consensus 92 ~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~y 171 (578)
..++.++++|+-+.. +-.+|..+..- .....+.--.-|.+ ++...++.|++-|||+ ..+-.|
T Consensus 120 ~~d~t~l~s~sDd~v-----~k~~d~s~a~v-~~~l~~htDYVR~g-~~~~~~~hivvtGsYD-----------g~vrl~ 181 (487)
T KOG0310|consen 120 PQDNTMLVSGSDDKV-----VKYWDLSTAYV-QAELSGHTDYVRCG-DISPANDHIVVTGSYD-----------GKVRLW 181 (487)
T ss_pred ccCCeEEEecCCCce-----EEEEEcCCcEE-EEEecCCcceeEee-ccccCCCeEEEecCCC-----------ceEEEE
Confidence 458889999875432 33445544442 33333333333322 2233456799999963 346667
Q ss_pred EcCcc-eEEEeccCCCCCCCCCceeEEEeCCEEEEE-ecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCcee----
Q 008089 172 NTETF-VWKRATTSGNPPSARDSHTCSSWKNKIIVI-GGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGH---- 245 (578)
Q Consensus 172 d~~t~-~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~-GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~h---- 245 (578)
|+.+. .|..--.. ..|.. -.+..-++.+++. || +.+-++|+.++. .++..+..|
T Consensus 182 DtR~~~~~v~elnh---g~pVe-~vl~lpsgs~iasAgG--------n~vkVWDl~~G~--------qll~~~~~H~KtV 241 (487)
T KOG0310|consen 182 DTRSLTSRVVELNH---GCPVE-SVLALPSGSLIASAGG--------NSVKVWDLTTGG--------QLLTSMFNHNKTV 241 (487)
T ss_pred EeccCCceeEEecC---CCcee-eEEEcCCCCEEEEcCC--------CeEEEEEecCCc--------eehhhhhcccceE
Confidence 77766 44322111 11111 1122223344443 44 335566665321 122222212
Q ss_pred -EEEEe-CCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCC
Q 008089 246 -STVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (578)
Q Consensus 246 -s~v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (578)
++... ++.-++-||.+.. +-+|| +..|+.+..... |.+-.+.+ + ..++.-+++|+.+..
T Consensus 242 TcL~l~s~~~rLlS~sLD~~------VKVfd--~t~~Kvv~s~~~-~~pvLsia---v--s~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGSLDRH------VKVFD--TTNYKVVHSWKY-PGPVLSIA---V--SPDDQTVVIGMSNGL 302 (487)
T ss_pred EEEEeecCCceEeecccccc------eEEEE--ccceEEEEeeec-ccceeeEE---e--cCCCceEEEecccce
Confidence 11222 3467778887643 77888 445777665421 22222222 1 357778888877654
No 115
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=74.90 E-value=43 Score=36.41 Aligned_cols=147 Identities=19% Similarity=0.234 Sum_probs=73.5
Q ss_pred EECCEEEEEcccCCCCCCCcEEEEECCCCeEE-ecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEE
Q 008089 92 TVGENLYVFGGTDGMNPLRDLHILDTSSHTWI-SPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYI 170 (578)
Q Consensus 92 ~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~-~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~ 170 (578)
..+++++..|+..| .+-+||..+..-- .+. .-..|...--.+..++.++++|+-+ .-+-.
T Consensus 77 R~DG~LlaaGD~sG-----~V~vfD~k~r~iLR~~~---ah~apv~~~~f~~~d~t~l~s~sDd-----------~v~k~ 137 (487)
T KOG0310|consen 77 RSDGRLLAAGDESG-----HVKVFDMKSRVILRQLY---AHQAPVHVTKFSPQDNTMLVSGSDD-----------KVVKY 137 (487)
T ss_pred ecCCeEEEccCCcC-----cEEEeccccHHHHHHHh---hccCceeEEEecccCCeEEEecCCC-----------ceEEE
Confidence 34899999998654 4888995552211 111 0111111112234578899998821 11223
Q ss_pred EEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCC-ceEEecCCCCCCCCCceeEEEE
Q 008089 171 LNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTL-TWKELNTSGMVLSPRAGHSTVA 249 (578)
Q Consensus 171 yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~-~W~~v~~~g~~p~~R~~hs~v~ 249 (578)
+|..+.. ......+.----|. .++...++.|++.||+++. +-.||+.+. .|..--..|. |. -.++.
T Consensus 138 ~d~s~a~-v~~~l~~htDYVR~-g~~~~~~~hivvtGsYDg~------vrl~DtR~~~~~v~elnhg~-pV----e~vl~ 204 (487)
T KOG0310|consen 138 WDLSTAY-VQAELSGHTDYVRC-GDISPANDHIVVTGSYDGK------VRLWDTRSLTSRVVELNHGC-PV----ESVLA 204 (487)
T ss_pred EEcCCcE-EEEEecCCcceeEe-eccccCCCeEEEecCCCce------EEEEEeccCCceeEEecCCC-ce----eeEEE
Confidence 3444433 22222111111111 1223347889999998765 677888766 5554433232 11 12333
Q ss_pred eC-CE-EEEEcCccCCCCccCcEEEEECCCC
Q 008089 250 FG-KN-LFVFGGFTDSQNLYDDLYMIDVDSG 278 (578)
Q Consensus 250 ~~-~~-iyV~GG~~~~~~~~~dv~~ydi~t~ 278 (578)
+. +. |...|| +.+-+||+.++
T Consensus 205 lpsgs~iasAgG--------n~vkVWDl~~G 227 (487)
T KOG0310|consen 205 LPSGSLIASAGG--------NSVKVWDLTTG 227 (487)
T ss_pred cCCCCEEEEcCC--------CeEEEEEecCC
Confidence 33 24 444444 34778887754
No 116
>PRK02889 tolB translocation protein TolB; Provisional
Probab=74.00 E-value=1.4e+02 Score=32.43 Aligned_cols=184 Identities=13% Similarity=0.052 Sum_probs=89.0
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEEC-CEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCccc
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVG-ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGH 138 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 138 (578)
..+|++|+.+++=..+. ..+.. .......-+ .+|++....++ ..++|.+|..+....++... . .....
T Consensus 220 ~~I~~~dl~~g~~~~l~---~~~g~-~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~---~-~~~~~ 288 (427)
T PRK02889 220 PVVYVHDLATGRRRVVA---NFKGS-NSAPAWSPDGRTLAVALSRDG---NSQIYTVNADGSGLRRLTQS---S-GIDTE 288 (427)
T ss_pred cEEEEEECCCCCEEEee---cCCCC-ccceEECCCCCEEEEEEccCC---CceEEEEECCCCCcEECCCC---C-CCCcC
Confidence 46999999887655543 11111 111112223 35554433332 25799999887776655321 1 11111
Q ss_pred EEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCc
Q 008089 139 SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSD 218 (578)
Q Consensus 139 s~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~d 218 (578)
.....+++.++|..- ... ...+|.++..+...+.+...+. .........+++.+++....+.. ..
T Consensus 289 ~~wSpDG~~l~f~s~-----~~g---~~~Iy~~~~~~g~~~~lt~~g~----~~~~~~~SpDG~~Ia~~s~~~g~---~~ 353 (427)
T PRK02889 289 PFFSPDGRSIYFTSD-----RGG---APQIYRMPASGGAAQRVTFTGS----YNTSPRISPDGKLLAYISRVGGA---FK 353 (427)
T ss_pred eEEcCCCCEEEEEec-----CCC---CcEEEEEECCCCceEEEecCCC----CcCceEECCCCCEEEEEEccCCc---EE
Confidence 222234443344321 001 2468888888877777753211 11112222345444444332221 26
Q ss_pred eEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCC
Q 008089 219 VHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (578)
Q Consensus 219 i~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t 277 (578)
++++|+.+...+.+...+. ...-...-+++.+++...... ...+++++...
T Consensus 354 I~v~d~~~g~~~~lt~~~~-----~~~p~~spdg~~l~~~~~~~g---~~~l~~~~~~g 404 (427)
T PRK02889 354 LYVQDLATGQVTALTDTTR-----DESPSFAPNGRYILYATQQGG---RSVLAAVSSDG 404 (427)
T ss_pred EEEEECCCCCeEEccCCCC-----ccCceECCCCCEEEEEEecCC---CEEEEEEECCC
Confidence 8999998888777653211 111123335555555544322 23477777744
No 117
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=71.14 E-value=1.3e+02 Score=30.95 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=34.0
Q ss_pred EEEEEcCCCCCCCCcccEEEEEcCC-CcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEEECC-CC
Q 008089 45 FLYVFGGYGKDNCQTNQVHVFDTVN-QTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTS-SH 120 (578)
Q Consensus 45 ~Iyv~GG~~~~~~~~~~v~~yD~~t-~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~yD~~-t~ 120 (578)
++|+..+.+ +.+.+||..+ .++..+... +.....+.++.- +..||+.+.. .+.+..|++. +.
T Consensus 3 ~~y~~~~~~------~~I~~~~~~~~g~l~~~~~~---~~~~~~~~l~~spd~~~lyv~~~~-----~~~i~~~~~~~~g 68 (330)
T PRK11028 3 IVYIASPES------QQIHVWNLNHEGALTLLQVV---DVPGQVQPMVISPDKRHLYVGVRP-----EFRVLSYRIADDG 68 (330)
T ss_pred EEEEEcCCC------CCEEEEEECCCCceeeeeEE---ecCCCCccEEECCCCCEEEEEECC-----CCcEEEEEECCCC
Confidence 477775532 4578888853 566654422 221112222222 3456775431 2557777775 45
Q ss_pred eEEec
Q 008089 121 TWISP 125 (578)
Q Consensus 121 ~W~~l 125 (578)
+++.+
T Consensus 69 ~l~~~ 73 (330)
T PRK11028 69 ALTFA 73 (330)
T ss_pred ceEEe
Confidence 56543
No 118
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=70.71 E-value=1.1e+02 Score=30.06 Aligned_cols=153 Identities=14% Similarity=0.160 Sum_probs=88.1
Q ss_pred EEEEEcCCCCCCCCcccEEEEEcCCC--cEEEeeecCCCC-CCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCe
Q 008089 45 FLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPP-TPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT 121 (578)
Q Consensus 45 ~Iyv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~P-~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~ 121 (578)
+||.--|.-. .+.+.++|+.+. .|++ .++ ..-.+-+.+..++.+|..-=.++ -.+.||..+-+
T Consensus 57 ~i~esTG~yg----~S~ir~~~L~~gq~~~s~-----~l~~~~~FgEGit~~gd~~y~LTw~eg-----vaf~~d~~t~~ 122 (262)
T COG3823 57 HILESTGLYG----FSKIRVSDLTTGQEIFSE-----KLAPDTVFGEGITKLGDYFYQLTWKEG-----VAFKYDADTLE 122 (262)
T ss_pred EEEEeccccc----cceeEEEeccCceEEEEe-----ecCCccccccceeeccceEEEEEeccc-----eeEEEChHHhh
Confidence 5666656432 246899999865 4555 333 34567788888999998853332 36777776543
Q ss_pred EEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEE-EeccCCCCCCCCCceeEEEeC
Q 008089 122 WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-RATTSGNPPSARDSHTCSSWK 200 (578)
Q Consensus 122 W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~-~~~~~g~~p~~R~~h~~~~~~ 200 (578)
- .+..+..-.|-+.+..+.+|++--| ...++.-||++..-. .+...-+..+-+.-.-.-.++
T Consensus 123 ~-----lg~~~y~GeGWgLt~d~~~LimsdG------------satL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~Vd 185 (262)
T COG3823 123 E-----LGRFSYEGEGWGLTSDDKNLIMSDG------------SATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVD 185 (262)
T ss_pred h-----hcccccCCcceeeecCCcceEeeCC------------ceEEEecCHHHhhhcceEEEEECCeecccccceeeec
Confidence 2 2344555567788888888888777 234455566654321 111111111111122233345
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCc---eEEecC
Q 008089 201 NKIIVIGGEDGHDYYLSDVHILDTDTLT---WKELNT 234 (578)
Q Consensus 201 ~~lyV~GG~~~~~~~~~di~~yD~~t~~---W~~v~~ 234 (578)
+.+|. +-...+.|.+.||++++ |..++.
T Consensus 186 G~lyA------NVw~t~~I~rI~p~sGrV~~widlS~ 216 (262)
T COG3823 186 GELYA------NVWQTTRIARIDPDSGRVVAWIDLSG 216 (262)
T ss_pred cEEEE------eeeeecceEEEcCCCCcEEEEEEccC
Confidence 55554 22245678899998875 777765
No 119
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=67.56 E-value=3e+02 Score=33.82 Aligned_cols=158 Identities=15% Similarity=0.080 Sum_probs=81.7
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCC-------CCC---CCCcccEEEEE--CCEEEEEccCCCCCCCCC
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRG-------EGP---EAREGHSAALV--GKRLFIFGGCGKSSNTND 161 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g-------~~P---~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~ 161 (578)
++.+||.... .+.+++||..+.........| ..+ ....-+++++. ++.|||....
T Consensus 694 ~g~LyVad~~-----~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-------- 760 (1057)
T PLN02919 694 NEKVYIAMAG-----QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-------- 760 (1057)
T ss_pred CCeEEEEECC-----CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC--------
Confidence 5678887532 246899998776654322111 000 01112233333 3458887552
Q ss_pred ceeeceEEEEEcCcceEEEeccC-----------CC----CCCCCC--ceeEEE-eCCEEEEEecCCCCCcccCceEEEE
Q 008089 162 EVYYNDLYILNTETFVWKRATTS-----------GN----PPSARD--SHTCSS-WKNKIIVIGGEDGHDYYLSDVHILD 223 (578)
Q Consensus 162 ~~~~ndv~~yd~~t~~W~~~~~~-----------g~----~p~~R~--~h~~~~-~~~~lyV~GG~~~~~~~~~di~~yD 223 (578)
.+.+.+||+.+.....+... +. ...... -.++++ -++.+||.... .+.|.+||
T Consensus 761 ---n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~------N~rIrviD 831 (1057)
T PLN02919 761 ---SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY------NHKIKKLD 831 (1057)
T ss_pred ---CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC------CCEEEEEE
Confidence 36788899887653322110 00 000001 112222 35678887543 34589999
Q ss_pred CCCCceEEecCCCCCC-------CCC--ceeEEE-EeCCEEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 224 TDTLTWKELNTSGMVL-------SPR--AGHSTV-AFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 224 ~~t~~W~~v~~~g~~p-------~~R--~~hs~v-~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
+++.....+...|..- ... .-+.++ .-++++||.-..+ +.|.++|+.++.
T Consensus 832 ~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N------n~Irvid~~~~~ 891 (1057)
T PLN02919 832 PATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN------SLIRYLDLNKGE 891 (1057)
T ss_pred CCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC------CEEEEEECCCCc
Confidence 9988877665443210 011 111222 2356788875442 458899998875
No 120
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=67.44 E-value=1e+02 Score=32.81 Aligned_cols=194 Identities=16% Similarity=0.195 Sum_probs=94.3
Q ss_pred cccEEEEEcCCCcE-EEeeecCCCCCCCcceeEEEE---CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCC
Q 008089 59 TNQVHVFDTVNQTW-SQPVIKGSPPTPRDSHSCTTV---GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEA 134 (578)
Q Consensus 59 ~~~v~~yD~~t~~W-~~l~~~g~~P~~R~~hs~~~~---~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~ 134 (578)
.+.+.++|..+.+- .++. ....-|..... +..+|+.+ ++ ..+-++|+.+.+-..- .+..
T Consensus 15 ~~~v~viD~~t~~~~~~i~------~~~~~h~~~~~s~Dgr~~yv~~-rd-----g~vsviD~~~~~~v~~-----i~~G 77 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIP------TGGAPHAGLKFSPDGRYLYVAN-RD-----GTVSVIDLATGKVVAT-----IKVG 77 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-------STTEEEEEE-TT-SSEEEEEE-TT-----SEEEEEETTSSSEEEE-----EE-S
T ss_pred CCEEEEEECCCCeEEEEEc------CCCCceeEEEecCCCCEEEEEc-CC-----CeEEEEECCcccEEEE-----EecC
Confidence 35789999988764 3433 22222554443 34688885 33 3589999998874321 1222
Q ss_pred CcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEE-EeccCCC---CCCCCCceeEEEeCCEEEEEecC
Q 008089 135 REGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-RATTSGN---PPSARDSHTCSSWKNKIIVIGGE 209 (578)
Q Consensus 135 R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~-~~~~~g~---~p~~R~~h~~~~~~~~lyV~GG~ 209 (578)
....+.++. +++.++.+.+ ..+.+.++|.++.+=. .++..+. .+.+|...-.....+..||+--.
T Consensus 78 ~~~~~i~~s~DG~~~~v~n~----------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk 147 (369)
T PF02239_consen 78 GNPRGIAVSPDGKYVYVANY----------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK 147 (369)
T ss_dssp SEEEEEEE--TTTEEEEEEE----------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred CCcceEEEcCCCCEEEEEec----------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence 233333332 4443333332 2467888898776533 3322111 13334332223335555555322
Q ss_pred CCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCC
Q 008089 210 DGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEG 289 (578)
Q Consensus 210 ~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~ 289 (578)
+ ...+|+.|.....=..... ....+..|-...-.+.-|++.+... .+.+-++|.+++.-..+...+..
T Consensus 148 d-----~~~I~vVdy~d~~~~~~~~---i~~g~~~~D~~~dpdgry~~va~~~----sn~i~viD~~~~k~v~~i~~g~~ 215 (369)
T PF02239_consen 148 D-----TGEIWVVDYSDPKNLKVTT---IKVGRFPHDGGFDPDGRYFLVAANG----SNKIAVIDTKTGKLVALIDTGKK 215 (369)
T ss_dssp T-----TTEEEEEETTTSSCEEEEE---EE--TTEEEEEE-TTSSEEEEEEGG----GTEEEEEETTTTEEEEEEE-SSS
T ss_pred c-----CCeEEEEEeccccccceee---ecccccccccccCcccceeeecccc----cceeEEEeeccceEEEEeecccc
Confidence 2 3468888866542222222 3345666666655544333333322 35789999999876665555544
Q ss_pred CC
Q 008089 290 PS 291 (578)
Q Consensus 290 P~ 291 (578)
|.
T Consensus 216 p~ 217 (369)
T PF02239_consen 216 PH 217 (369)
T ss_dssp BE
T ss_pred cc
Confidence 43
No 121
>PRK13684 Ycf48-like protein; Provisional
Probab=66.79 E-value=1.7e+02 Score=30.64 Aligned_cols=199 Identities=11% Similarity=0.102 Sum_probs=92.7
Q ss_pred CCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEE
Q 008089 69 NQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRL 147 (578)
Q Consensus 69 t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~l 147 (578)
-.+|.++......|. .......+ ++.+|+.|.. ..+++-+-.-.+|+.+.. +..-..+.+....+..
T Consensus 118 G~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~g~~------G~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~ 185 (334)
T PRK13684 118 GKNWTRIPLSEKLPG--SPYLITALGPGTAEMATNV------GAIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGK 185 (334)
T ss_pred CCCCeEccCCcCCCC--CceEEEEECCCcceeeecc------ceEEEECCCCCCceeCcC----CCcceEEEEEECCCCe
Confidence 458988642111221 22233333 3446666532 235555555678987652 1122334444444444
Q ss_pred EEEccCCCCCCCCCceeeceEEEE-EcCcceEEEeccCCCCCCCCCceeEEEe-CCEEEEEecCCCCCcccCceEEE--E
Q 008089 148 FIFGGCGKSSNTNDEVYYNDLYIL-NTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHIL--D 223 (578)
Q Consensus 148 yvfGG~~~~~~~~~~~~~ndv~~y-d~~t~~W~~~~~~g~~p~~R~~h~~~~~-~~~lyV~GG~~~~~~~~~di~~y--D 223 (578)
|+..|. ...++.. |....+|+.+.. +..+..++++.. ++.++++|... . .++ +
T Consensus 186 ~v~~g~-----------~G~i~~s~~~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg~~G-~-------~~~~s~ 242 (334)
T PRK13684 186 YVAVSS-----------RGNFYSTWEPGQTAWTPHQR----NSSRRLQSMGFQPDGNLWMLARGG-Q-------IRFNDP 242 (334)
T ss_pred EEEEeC-----------CceEEEEcCCCCCeEEEeeC----CCcccceeeeEcCCCCEEEEecCC-E-------EEEccC
Confidence 444331 1122222 344568988852 333444454443 67788876432 1 223 2
Q ss_pred CCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeee
Q 008089 224 TDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLD 302 (578)
Q Consensus 224 ~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~ 302 (578)
-....|+.+.... .......++++.. ++.+|++|... -++.-.-...+|+.+......|. ......+
T Consensus 243 d~G~sW~~~~~~~-~~~~~~l~~v~~~~~~~~~~~G~~G-------~v~~S~d~G~tW~~~~~~~~~~~---~~~~~~~- 310 (334)
T PRK13684 243 DDLESWSKPIIPE-ITNGYGYLDLAYRTPGEIWAGGGNG-------TLLVSKDGGKTWEKDPVGEEVPS---NFYKIVF- 310 (334)
T ss_pred CCCCccccccCCc-cccccceeeEEEcCCCCEEEEcCCC-------eEEEeCCCCCCCeECCcCCCCCc---ceEEEEE-
Confidence 2345799764310 0011122333333 55788887542 13443344568998754222221 1111122
Q ss_pred ccCCCEEEEEccc
Q 008089 303 PLKGGVLVFIGGC 315 (578)
Q Consensus 303 ~~~~~~l~v~GG~ 315 (578)
..++..|+.|..
T Consensus 311 -~~~~~~~~~G~~ 322 (334)
T PRK13684 311 -LDPEKGFVLGQR 322 (334)
T ss_pred -eCCCceEEECCC
Confidence 246677777753
No 122
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=63.89 E-value=2.1e+02 Score=30.56 Aligned_cols=259 Identities=16% Similarity=0.148 Sum_probs=112.3
Q ss_pred ceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEE-EeeecCCC----CCCCcceeEEEECCEEEEEcccCCCCC
Q 008089 34 GHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWS-QPVIKGSP----PTPRDSHSCTTVGENLYVFGGTDGMNP 108 (578)
Q Consensus 34 ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~-~l~~~g~~----P~~R~~hs~~~~~~kIYv~GG~~~~~~ 108 (578)
.+...+..+|+++|+ +.+ ..+.+.++|..+.+=. .++ .+.. +.+|...-........|++--.+
T Consensus 80 ~~~i~~s~DG~~~~v-~n~-----~~~~v~v~D~~tle~v~~I~-~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd---- 148 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYV-ANY-----EPGTVSVIDAETLEPVKTIP-TGGMPVDGPESRVAAIVASPGRPEFVVNLKD---- 148 (369)
T ss_dssp EEEEEE--TTTEEEE-EEE-----ETTEEEEEETTT--EEEEEE---EE-TTTS---EEEEEE-SSSSEEEEEETT----
T ss_pred cceEEEcCCCCEEEE-Eec-----CCCceeEeccccccceeecc-cccccccccCCCceeEEecCCCCEEEEEEcc----
Confidence 344444456665544 332 2357889998886543 333 2222 33444333333455566664322
Q ss_pred CCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECC-EEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCC
Q 008089 109 LRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 187 (578)
Q Consensus 109 ~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~ 187 (578)
..++|..|.....=.... .....++-|-.....+ +.|+.+-. -.+.+-+.|..+.+-...-..+..
T Consensus 149 ~~~I~vVdy~d~~~~~~~---~i~~g~~~~D~~~dpdgry~~va~~----------~sn~i~viD~~~~k~v~~i~~g~~ 215 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVT---TIKVGRFPHDGGFDPDGRYFLVAAN----------GSNKIAVIDTKTGKLVALIDTGKK 215 (369)
T ss_dssp TTEEEEEETTTSSCEEEE---EEE--TTEEEEEE-TTSSEEEEEEG----------GGTEEEEEETTTTEEEEEEE-SSS
T ss_pred CCeEEEEEecccccccee---eecccccccccccCcccceeeeccc----------ccceeEEEeeccceEEEEeecccc
Confidence 357899987654211111 2234556666666544 33333321 135778889888766554333333
Q ss_pred CCCCCceeEEEe-CCEEEEEecCCCCCcccCceEEEEC----CCCceEEecCCCCCCCCCceeEEEEeCC--EEEEEcCc
Q 008089 188 PSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDT----DTLTWKELNTSGMVLSPRAGHSTVAFGK--NLFVFGGF 260 (578)
Q Consensus 188 p~~R~~h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~----~t~~W~~v~~~g~~p~~R~~hs~v~~~~--~iyV~GG~ 260 (578)
|.+.....+.-. .+-++..+|..... -.+.--|+ ....|+.+.. .+..-.++-+..+.+ .+|+---.
T Consensus 216 p~~~~~~~~php~~g~vw~~~~~~~~~---~~~ig~~~v~v~d~~~wkvv~~---I~~~G~glFi~thP~s~~vwvd~~~ 289 (369)
T PF02239_consen 216 PHPGPGANFPHPGFGPVWATSGLGYFA---IPLIGTDPVSVHDDYAWKVVKT---IPTQGGGLFIKTHPDSRYVWVDTFL 289 (369)
T ss_dssp BEETTEEEEEETTTEEEEEEEBSSSSE---EEEEE--TTT-STTTBTSEEEE---EE-SSSS--EE--TT-SEEEEE-TT
T ss_pred ccccccccccCCCcceEEeecccccee---cccccCCccccchhhcCeEEEE---EECCCCcceeecCCCCccEEeeccC
Confidence 322222222211 23455555432211 01111222 2356777765 333333334444544 45553111
Q ss_pred cCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEecccccc
Q 008089 261 TDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNE 335 (578)
Q Consensus 261 ~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~~~~~~~ 335 (578)
+. ..+.|.++|.++. +.+......+..+..|. -....+..+||.-..... .+..+|..++++
T Consensus 290 ~~---~~~~v~viD~~tl--~~~~~i~~~~~~~~~h~---ef~~dG~~v~vS~~~~~~-----~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 290 NP---DADTVQVIDKKTL--KVVKTITPGPGKRVVHM---EFNPDGKEVWVSVWDGNG-----AIVVYDAKTLKE 351 (369)
T ss_dssp -S---SHT-EEEEECCGT--EEEE-HHHHHT--EEEE---EE-TTSSEEEEEEE--TT-----EEEEEETTTTEE
T ss_pred CC---CCceEEEEECcCc--ceeEEEeccCCCcEecc---EECCCCCEEEEEEecCCC-----EEEEEECCCcEE
Confidence 11 1577999999998 33333222222233332 223567778875433221 577777666553
No 123
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=61.27 E-value=2.4e+02 Score=30.38 Aligned_cols=244 Identities=16% Similarity=0.092 Sum_probs=106.0
Q ss_pred EcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCC-CCcceeEEEECCEEE-EEcccCCCCCCCcEEEEEC
Q 008089 40 IKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPT-PRDSHSCTTVGENLY-VFGGTDGMNPLRDLHILDT 117 (578)
Q Consensus 40 v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~-~R~~hs~~~~~~kIY-v~GG~~~~~~~~~v~~yD~ 117 (578)
..+|++| +|+|-.. ....+|.+|+.+++-.+|. ..+. ...+-..+.-+..+| +-.+ ..++..|+
T Consensus 44 t~dG~kl-lF~s~~d---g~~nly~lDL~t~~i~QLT---dg~g~~~~g~~~s~~~~~~~Yv~~~-------~~l~~vdL 109 (386)
T PF14583_consen 44 TDDGRKL-LFASDFD---GNRNLYLLDLATGEITQLT---DGPGDNTFGGFLSPDDRALYYVKNG-------RSLRRVDL 109 (386)
T ss_dssp -TTS-EE-EEEE-TT---SS-EEEEEETTT-EEEE------SS-B-TTT-EE-TTSSEEEEEETT-------TEEEEEET
T ss_pred CCCCCEE-EEEeccC---CCcceEEEEcccCEEEECc---cCCCCCccceEEecCCCeEEEEECC-------CeEEEEEC
Confidence 4456555 4444322 2246899999999999986 2222 222322222245554 4444 36899999
Q ss_pred CCCeEEecccCCCCCCCCcccEEEEEC-CEEEEEccCCCCCC---CCC---------ceeeceEEEEEcCcceEEEeccC
Q 008089 118 SSHTWISPSVRGEGPEAREGHSAALVG-KRLFIFGGCGKSSN---TND---------EVYYNDLYILNTETFVWKRATTS 184 (578)
Q Consensus 118 ~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~lyvfGG~~~~~~---~~~---------~~~~ndv~~yd~~t~~W~~~~~~ 184 (578)
.|.+=+.+- ..|..-.+....+++ ++-.++|=...... ... ......+...|+.+.+.+.+-..
T Consensus 110 ~T~e~~~vy---~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~ 186 (386)
T PF14583_consen 110 DTLEERVVY---EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED 186 (386)
T ss_dssp TT--EEEEE---E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE
T ss_pred CcCcEEEEE---ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec
Confidence 887654443 233333333333322 22222221100000 010 12245678889999888777432
Q ss_pred CCCCCCCCceeEEE-eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCC
Q 008089 185 GNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS 263 (578)
Q Consensus 185 g~~p~~R~~h~~~~-~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~ 263 (578)
. .-.+|--.. .+..+++|-=...-..+-..||..|........+... .+....+|--...++..+.+=++...
T Consensus 187 ~----~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~--~~~e~~gHEfw~~DG~~i~y~~~~~~ 260 (386)
T PF14583_consen 187 T----DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR--MEGESVGHEFWVPDGSTIWYDSYTPG 260 (386)
T ss_dssp S----S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-EEEEEEETT
T ss_pred C----ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC--CCCcccccccccCCCCEEEEEeecCC
Confidence 1 112343333 2566777732222222334699999987777777542 34556667666666654444333222
Q ss_pred CCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEcccc
Q 008089 264 QNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCN 316 (578)
Q Consensus 264 ~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~ 316 (578)
. .-.-|..||+.+..=+.+..+ +...|.. ...++.++|-=|.+
T Consensus 261 ~-~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~----ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 261 G-QDFWIAGYDPDTGERRRLMEM-----PWCSHFM----SSPDGKLFVGDGGD 303 (386)
T ss_dssp T---EEEEEE-TTT--EEEEEEE------SEEEEE----E-TTSSEEEEEE--
T ss_pred C-CceEEEeeCCCCCCceEEEeC-----CceeeeE----EcCCCCEEEecCCC
Confidence 1 112378899998754444443 2233332 24577888765654
No 124
>smart00284 OLF Olfactomedin-like domains.
Probab=60.58 E-value=2e+02 Score=29.19 Aligned_cols=194 Identities=13% Similarity=0.086 Sum_probs=97.0
Q ss_pred CCEEEEEcccCCCCCCCcEEEEEC----CCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDT----SSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLY 169 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~----~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~ 169 (578)
++++|++.|.. ...+.++.|.- ....+.+. -.+|.+-.|.+.++.++.+|.--. ....+.
T Consensus 34 ~~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~---~~Lp~~~~GtG~VVYngslYY~~~-----------~s~~ii 97 (255)
T smart00284 34 KSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTD---HPLPHAGQGTGVVVYNGSLYFNKF-----------NSHDIC 97 (255)
T ss_pred CceEEEEcccc--CCCcEEEEecCHHHHhccCCceE---EECCCccccccEEEECceEEEEec-----------CCccEE
Confidence 46888887653 12345666642 22333221 135777788899999999998543 146799
Q ss_pred EEEcCcceEEE---eccCC---CCCCCCCcee---EEEeCCEEEEE-ecCCCCCcccCceEEEECCCCceEEecCCCCCC
Q 008089 170 ILNTETFVWKR---ATTSG---NPPSARDSHT---CSSWKNKIIVI-GGEDGHDYYLSDVHILDTDTLTWKELNTSGMVL 239 (578)
Q Consensus 170 ~yd~~t~~W~~---~~~~g---~~p~~R~~h~---~~~~~~~lyV~-GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p 239 (578)
+||+.+.+-.. ++..+ ..|-...+++ .++-++-|+|+ ......+. --|-.+|+.+..-.+.=.+ .-
T Consensus 98 KydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~--ivvSkLnp~tL~ve~tW~T--~~ 173 (255)
T smart00284 98 RFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGK--IVISKLNPATLTIENTWIT--TY 173 (255)
T ss_pred EEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCC--EEEEeeCcccceEEEEEEc--CC
Confidence 99999876542 22110 1111111122 22333444444 33222111 1134566665432222111 11
Q ss_pred CCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEE
Q 008089 240 SPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFI 312 (578)
Q Consensus 240 ~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~ 312 (578)
..+...-++++-+.||++-...... ..=.+.||..+++=..+... -..++.+..++-..+.+++||+.
T Consensus 174 ~k~sa~naFmvCGvLY~~~s~~~~~--~~I~yayDt~t~~~~~~~i~---f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 174 NKRSASNAFMICGILYVTRSLGSKG--EKVFYAYDTNTGKEGHLDIP---FENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred CcccccccEEEeeEEEEEccCCCCC--cEEEEEEECCCCccceeeee---eccccccceeceeCCCCCeEEEE
Confidence 2233334667778899986422111 12268899998764433221 12334444444344567777764
No 125
>PRK01742 tolB translocation protein TolB; Provisional
Probab=59.93 E-value=2.5e+02 Score=30.31 Aligned_cols=163 Identities=10% Similarity=0.029 Sum_probs=75.7
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCE-EEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCccc
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGEN-LYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGH 138 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~k-IYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 138 (578)
..++++|..++.-..+. ..+. ........-+++ |++....++. -++|.+|+.+....++... .. ....
T Consensus 228 ~~i~i~dl~tg~~~~l~---~~~g-~~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~~~~~lt~~---~~-~~~~ 296 (429)
T PRK01742 228 SQLVVHDLRSGARKVVA---SFRG-HNGAPAFSPDGSRLAFASSKDGV---LNIYVMGANGGTPSQLTSG---AG-NNTE 296 (429)
T ss_pred cEEEEEeCCCCceEEEe---cCCC-ccCceeECCCCCEEEEEEecCCc---EEEEEEECCCCCeEeeccC---CC-CcCC
Confidence 45899999877655543 1111 111112222444 4443322222 3689999988777665421 11 1111
Q ss_pred EEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCc
Q 008089 139 SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSD 218 (578)
Q Consensus 139 s~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~d 218 (578)
.....+++.++|.... .. ...+|.++.....-+.+... . + .....-+++.+++.+. +.
T Consensus 297 ~~wSpDG~~i~f~s~~-----~g---~~~I~~~~~~~~~~~~l~~~-----~-~-~~~~SpDG~~ia~~~~-------~~ 354 (429)
T PRK01742 297 PSWSPDGQSILFTSDR-----SG---SPQVYRMSASGGGASLVGGR-----G-Y-SAQISADGKTLVMING-------DN 354 (429)
T ss_pred EEECCCCCEEEEEECC-----CC---CceEEEEECCCCCeEEecCC-----C-C-CccCCCCCCEEEEEcC-------CC
Confidence 1222344433333210 00 23677777765543333211 1 1 1112224444444432 34
Q ss_pred eEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCc
Q 008089 219 VHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGF 260 (578)
Q Consensus 219 i~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~ 260 (578)
++.+|+.+..+..+.... ........-+++++++++.
T Consensus 355 i~~~Dl~~g~~~~lt~~~-----~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 355 VVKQDLTSGSTEVLSSTF-----LDESPSISPNGIMIIYSST 391 (429)
T ss_pred EEEEECCCCCeEEecCCC-----CCCCceECCCCCEEEEEEc
Confidence 788999998888764311 1111123335566666654
No 126
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=59.58 E-value=3.2e+02 Score=31.29 Aligned_cols=115 Identities=11% Similarity=0.115 Sum_probs=61.5
Q ss_pred EEEeCCEEEEEecCCCCCcccCceEEEECCCC-ceEEecCCCCCCCCCceeEEEE--e-CCEEEEEcCccCCCCccCcEE
Q 008089 196 CSSWKNKIIVIGGEDGHDYYLSDVHILDTDTL-TWKELNTSGMVLSPRAGHSTVA--F-GKNLFVFGGFTDSQNLYDDLY 271 (578)
Q Consensus 196 ~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~-~W~~v~~~g~~p~~R~~hs~v~--~-~~~iyV~GG~~~~~~~~~dv~ 271 (578)
+..-++.++.+|-.... .++.+.++.+ +-+.+. ..|..+...+... + ++++++.- ....+++
T Consensus 389 aiSPdg~~Ia~st~~~~-----~iy~L~~~~~vk~~~v~---~~~~~~~~a~~i~ftid~~k~~~~s------~~~~~le 454 (691)
T KOG2048|consen 389 AISPDGNLIAISTVSRT-----KIYRLQPDPNVKVINVD---DVPLALLDASAISFTIDKNKLFLVS------KNIFSLE 454 (691)
T ss_pred ccCCCCCEEEEeeccce-----EEEEeccCcceeEEEec---cchhhhccceeeEEEecCceEEEEe------cccceeE
Confidence 33346777777643211 2444444432 222233 3666665555443 2 46666665 2245688
Q ss_pred EEECCCCcEEEEEeCCCC-CCCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEeccccc
Q 008089 272 MIDVDSGLWTKVITTGEG-PSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 334 (578)
Q Consensus 272 ~ydi~t~~W~~l~~~~~~-P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~~~~~~ 334 (578)
.++.++..-+.+.....- .++... ..+....+++|.+++++ .+++.+++...+
T Consensus 455 ~~el~~ps~kel~~~~~~~~~~~I~---~l~~SsdG~yiaa~~t~-------g~I~v~nl~~~~ 508 (691)
T KOG2048|consen 455 EFELETPSFKELKSIQSQAKCPSIS---RLVVSSDGNYIAAISTR-------GQIFVYNLETLE 508 (691)
T ss_pred EEEecCcchhhhhccccccCCCcce---eEEEcCCCCEEEEEecc-------ceEEEEEcccce
Confidence 888888877776543211 122212 22334678899988754 356777666554
No 127
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=59.18 E-value=2.6e+02 Score=30.22 Aligned_cols=217 Identities=11% Similarity=0.114 Sum_probs=101.8
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCCcEEEEECCCCe
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHT 121 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~yD~~t~~ 121 (578)
++..|++|-.+ -++.=.-.-.+|.++.....+|.. .+....+ ++.++++|.. ..+++-+-.-.+
T Consensus 146 ~~~g~~vG~~G-------~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~------G~v~~S~D~G~t 210 (398)
T PLN00033 146 GKEGWIIGKPA-------ILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE------GAIYVTSNAGRN 210 (398)
T ss_pred CCEEEEEcCce-------EEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEecc------ceEEEECCCCCC
Confidence 34588876431 233333345789986532223332 3334444 4557888742 236665555568
Q ss_pred EEecccCC-CCCCCC--------------cccEEEE-ECCEEEEEccCCCCCCCCCceeeceEEEEEcCcc-eEEEeccC
Q 008089 122 WISPSVRG-EGPEAR--------------EGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWKRATTS 184 (578)
Q Consensus 122 W~~l~~~g-~~P~~R--------------~~hs~~~-~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~-~W~~~~~~ 184 (578)
|+.+.... +.+..+ ...++.. .++.++++|-. ..+++-..... .|+.+..
T Consensus 211 W~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~------------G~~~~s~d~G~~~W~~~~~- 277 (398)
T PLN00033 211 WKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR------------GNFYLTWEPGQPYWQPHNR- 277 (398)
T ss_pred ceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECC------------ccEEEecCCCCcceEEecC-
Confidence 98752110 001110 0111121 23456565542 12333333333 3888853
Q ss_pred CCCCCCCCceeEE-EeCCEEEEEecCCCCCcccCceEEEECCCC-----ceEEecCCCCCCCCCcee-EEEEe-CCEEEE
Q 008089 185 GNPPSARDSHTCS-SWKNKIIVIGGEDGHDYYLSDVHILDTDTL-----TWKELNTSGMVLSPRAGH-STVAF-GKNLFV 256 (578)
Q Consensus 185 g~~p~~R~~h~~~-~~~~~lyV~GG~~~~~~~~~di~~yD~~t~-----~W~~v~~~g~~p~~R~~h-s~v~~-~~~iyV 256 (578)
+..+...++. ..++.+++.|... .++.-+-... .|.++.. +..+... .+... ++.+++
T Consensus 278 ---~~~~~l~~v~~~~dg~l~l~g~~G-------~l~~S~d~G~~~~~~~f~~~~~----~~~~~~l~~v~~~~d~~~~a 343 (398)
T PLN00033 278 ---ASARRIQNMGWRADGGLWLLTRGG-------GLYVSKGTGLTEEDFDFEEADI----KSRGFGILDVGYRSKKEAWA 343 (398)
T ss_pred ---CCccceeeeeEcCCCCEEEEeCCc-------eEEEecCCCCcccccceeeccc----CCCCcceEEEEEcCCCcEEE
Confidence 3333333333 3477888876432 1222233333 3444432 2223322 23333 567888
Q ss_pred EcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEc
Q 008089 257 FGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIG 313 (578)
Q Consensus 257 ~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~G 313 (578)
.|... -+++-...-.+|+++......+..-+. +.+ ..++..|+.|
T Consensus 344 ~G~~G-------~v~~s~D~G~tW~~~~~~~~~~~~ly~---v~f--~~~~~g~~~G 388 (398)
T PLN00033 344 AGGSG-------ILLRSTDGGKSWKRDKGADNIAANLYS---VKF--FDDKKGFVLG 388 (398)
T ss_pred EECCC-------cEEEeCCCCcceeEccccCCCCcceeE---EEE--cCCCceEEEe
Confidence 88652 255555667799997643333333232 122 2346777766
No 128
>PTZ00421 coronin; Provisional
Probab=55.16 E-value=3.4e+02 Score=30.25 Aligned_cols=62 Identities=19% Similarity=0.166 Sum_probs=32.8
Q ss_pred EEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCe
Q 008089 46 LYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT 121 (578)
Q Consensus 46 Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~ 121 (578)
+++.||.+ ..+.++|+.+.+-... ..+ ... .........++.+++.|+.++ .+.+||+.+.+
T Consensus 140 iLaSgs~D------gtVrIWDl~tg~~~~~-l~~-h~~-~V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg~ 201 (493)
T PTZ00421 140 VLASAGAD------MVVNVWDVERGKAVEV-IKC-HSD-QITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDGT 201 (493)
T ss_pred EEEEEeCC------CEEEEEECCCCeEEEE-EcC-CCC-ceEEEEEECCCCEEEEecCCC-----EEEEEECCCCc
Confidence 55666643 3477888877653321 111 111 111111122667777777653 48889988765
No 129
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=54.60 E-value=99 Score=34.63 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=46.9
Q ss_pred CCCcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCC
Q 008089 30 GKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPL 109 (578)
Q Consensus 30 ~~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~ 109 (578)
.|+.|.-++.-..+.-||+.|- -.++|+||+..+.|-.+- ..-.+-..+....--+.|+.+||.++
T Consensus 132 IP~~GRDm~y~~~scDly~~gs-------g~evYRlNLEqGrfL~P~---~~~~~~lN~v~in~~hgLla~Gt~~g---- 197 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS-------GSEVYRLNLEQGRFLNPF---ETDSGELNVVSINEEHGLLACGTEDG---- 197 (703)
T ss_pred cCcCCccccccCCCccEEEeec-------CcceEEEEcccccccccc---ccccccceeeeecCccceEEecccCc----
Confidence 3666777666655555777553 257999999999998632 11112222222222456888888654
Q ss_pred CcEEEEECCCCe
Q 008089 110 RDLHILDTSSHT 121 (578)
Q Consensus 110 ~~v~~yD~~t~~ 121 (578)
.++.+|+.+.+
T Consensus 198 -~VEfwDpR~ks 208 (703)
T KOG2321|consen 198 -VVEFWDPRDKS 208 (703)
T ss_pred -eEEEecchhhh
Confidence 47788876543
No 130
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=53.65 E-value=89 Score=34.98 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=43.6
Q ss_pred CCCCcccEEEEEC--CEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecC
Q 008089 132 PEAREGHSAALVG--KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGE 209 (578)
Q Consensus 132 P~~R~~hs~~~~~--~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~ 209 (578)
-.|++|.-+++.. -.||+.|- -.++|++|++.+.|-..-.. -.+-..+....--+.|+.+||.
T Consensus 131 RIP~~GRDm~y~~~scDly~~gs------------g~evYRlNLEqGrfL~P~~~---~~~~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVGS------------GSEVYRLNLEQGRFLNPFET---DSGELNVVSINEEHGLLACGTE 195 (703)
T ss_pred ecCcCCccccccCCCccEEEeec------------CcceEEEEcccccccccccc---ccccceeeeecCccceEEeccc
Confidence 4556677776654 23666554 47899999999998543211 1111111111124568899886
Q ss_pred CCCCcccCceEEEECCCC
Q 008089 210 DGHDYYLSDVHILDTDTL 227 (578)
Q Consensus 210 ~~~~~~~~di~~yD~~t~ 227 (578)
++. +..||+...
T Consensus 196 ~g~------VEfwDpR~k 207 (703)
T KOG2321|consen 196 DGV------VEFWDPRDK 207 (703)
T ss_pred Cce------EEEecchhh
Confidence 543 677787554
No 131
>PLN00181 protein SPA1-RELATED; Provisional
Probab=53.62 E-value=4.4e+02 Score=31.10 Aligned_cols=174 Identities=11% Similarity=0.126 Sum_probs=77.8
Q ss_pred cEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEEECCCCeEE-ecccCCCCCCCCcc
Q 008089 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTWI-SPSVRGEGPEAREG 137 (578)
Q Consensus 61 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~-~l~~~g~~P~~R~~ 137 (578)
.+.++|..+++....- .+. ...-.++... ++.+++.||.++ .+.+||+.+..-. .+.. .. .-
T Consensus 556 ~v~lWd~~~~~~~~~~-~~H---~~~V~~l~~~p~~~~~L~Sgs~Dg-----~v~iWd~~~~~~~~~~~~----~~--~v 620 (793)
T PLN00181 556 VVQVWDVARSQLVTEM-KEH---EKRVWSIDYSSADPTLLASGSDDG-----SVKLWSINQGVSIGTIKT----KA--NI 620 (793)
T ss_pred eEEEEECCCCeEEEEe-cCC---CCCEEEEEEcCCCCCEEEEEcCCC-----EEEEEECCCCcEEEEEec----CC--Ce
Confidence 4677887765433211 111 1111222222 456778887654 3778887765322 2110 00 01
Q ss_pred cEEEE--ECCEEEEEccCCCCCCCCCceeeceEEEEEcCcce--EEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCC
Q 008089 138 HSAAL--VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--WKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHD 213 (578)
Q Consensus 138 hs~~~--~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~--W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~ 213 (578)
.++.. .++.+++.|+. ...+++||+.+.. ...+.. . . ..-..+...++..++.|+.++
T Consensus 621 ~~v~~~~~~g~~latgs~-----------dg~I~iwD~~~~~~~~~~~~~--h-~--~~V~~v~f~~~~~lvs~s~D~-- 682 (793)
T PLN00181 621 CCVQFPSESGRSLAFGSA-----------DHKVYYYDLRNPKLPLCTMIG--H-S--KTVSYVRFVDSSTLVSSSTDN-- 682 (793)
T ss_pred EEEEEeCCCCCEEEEEeC-----------CCeEEEEECCCCCccceEecC--C-C--CCEEEEEEeCCCEEEEEECCC--
Confidence 11111 13567777773 2457888886542 111110 0 0 001122223556667776543
Q ss_pred cccCceEEEECCCC----ceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCC
Q 008089 214 YYLSDVHILDTDTL----TWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (578)
Q Consensus 214 ~~~~di~~yD~~t~----~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~ 278 (578)
.+.+||+... .|..+.... -........+....+.+++.|+.+. .+.+|+....
T Consensus 683 ----~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs~D~------~v~iw~~~~~ 740 (793)
T PLN00181 683 ----TLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGSETN------EVFVYHKAFP 740 (793)
T ss_pred ----EEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEeCCC------EEEEEECCCC
Confidence 3677777532 122221100 0001111122233456777777543 4777776543
No 132
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=53.42 E-value=1.2e+02 Score=31.98 Aligned_cols=73 Identities=18% Similarity=0.179 Sum_probs=37.0
Q ss_pred eCCEEEEE---ecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCE--EEEEcCccCCCCccCcEEE
Q 008089 199 WKNKIIVI---GGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKN--LFVFGGFTDSQNLYDDLYM 272 (578)
Q Consensus 199 ~~~~lyV~---GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~--iyV~GG~~~~~~~~~dv~~ 272 (578)
-.++|||. |+.......-.+||+||+++.+-..-- +.....-++.+. +++ ||.+-+. -.++++
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri-----~l~~~~~Si~Vsqd~~P~L~~~~~~------~~~l~v 316 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARI-----PLEHPIDSIAVSQDDKPLLYALSAG------DGTLDV 316 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEE-----EEEEEESEEEEESSSS-EEEEEETT------TTEEEE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEE-----eCCCccceEEEccCCCcEEEEEcCC------CCeEEE
Confidence 47889986 333233335668999999987633221 111111133333 333 5544222 135999
Q ss_pred EECCCCcEEE
Q 008089 273 IDVDSGLWTK 282 (578)
Q Consensus 273 ydi~t~~W~~ 282 (578)
||..+++-..
T Consensus 317 ~D~~tGk~~~ 326 (342)
T PF06433_consen 317 YDAATGKLVR 326 (342)
T ss_dssp EETTT--EEE
T ss_pred EeCcCCcEEe
Confidence 9999986443
No 133
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=52.15 E-value=2.7e+02 Score=28.29 Aligned_cols=215 Identities=14% Similarity=0.224 Sum_probs=91.2
Q ss_pred ceEEEEEcCCCEEEEEcC-CCCCCCCcccEEEEEc---CCCcEEEeeecCCCCC-------CCcceeEEEECCEEEEEcc
Q 008089 34 GHTCNAIKGGRFLYVFGG-YGKDNCQTNQVHVFDT---VNQTWSQPVIKGSPPT-------PRDSHSCTTVGENLYVFGG 102 (578)
Q Consensus 34 ghs~v~v~~g~~Iyv~GG-~~~~~~~~~~v~~yD~---~t~~W~~l~~~g~~P~-------~R~~hs~~~~~~kIYv~GG 102 (578)
++++-++ +++||..=- ..-.+......+.||- ....|+.-. .+.+|. .-.-|+.+.+++.-|.+|=
T Consensus 77 CmSMGv~--~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~te-L~~~~~~~~a~~~vTe~HSFa~i~~~~fA~Gy 153 (367)
T PF12217_consen 77 CMSMGVV--GNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITE-LGTIASFTSAGVAVTELHSFATIDDNQFAVGY 153 (367)
T ss_dssp -B-EEEE--TTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEE-EES-TT--------SEEEEEEE-SSS-EEEEE
T ss_pred eeeeeee--cceeeEEEeehhhhhhhhhhhhhhcccccccCCceeee-cccccccccccceeeeeeeeeEecCCceeEEe
Confidence 3444455 456665432 2222223344556664 467888644 233443 3456888899888888875
Q ss_pred cCCCCCCCcEEEEECCC-----CeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcce
Q 008089 103 TDGMNPLRDLHILDTSS-----HTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV 177 (578)
Q Consensus 103 ~~~~~~~~~v~~yD~~t-----~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~ 177 (578)
.++.-.-..+-.+-... .....-.+...........+.-.+++.||+.--- ......-..+.+-+.....
T Consensus 154 HnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRg-----t~~~~~GS~L~rs~d~G~~ 228 (367)
T PF12217_consen 154 HNGDVSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRG-----TLPTNPGSSLHRSDDNGQN 228 (367)
T ss_dssp EE-SSSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEE-----S-TTS---EEEEESSTTSS
T ss_pred ccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcC-----cCCCCCcceeeeecccCCc
Confidence 55543223332222111 1111111111112222233455678999987421 1122345678888888899
Q ss_pred EEEeccCCCCCCCCCce---eEEEeCCEEEEEecCCCCCc---------cc---CceE--E-----EECCCCceEEecCC
Q 008089 178 WKRATTSGNPPSARDSH---TCSSWKNKIIVIGGEDGHDY---------YL---SDVH--I-----LDTDTLTWKELNTS 235 (578)
Q Consensus 178 W~~~~~~g~~p~~R~~h---~~~~~~~~lyV~GG~~~~~~---------~~---~di~--~-----yD~~t~~W~~v~~~ 235 (578)
|..+... ....| -.+..++.||+||-....+. +- ...+ . +.++.-.|..+...
T Consensus 229 w~slrfp-----~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdq 303 (367)
T PF12217_consen 229 WSSLRFP-----NNVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQ 303 (367)
T ss_dssp -EEEE-T-----T---SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-
T ss_pred hhhcccc-----ccccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecc
Confidence 9988632 11222 24567999999997532111 10 0111 1 24455567766542
Q ss_pred ---CCCCCCCceeEEEEe-CCE-EEEEcCcc
Q 008089 236 ---GMVLSPRAGHSTVAF-GKN-LFVFGGFT 261 (578)
Q Consensus 236 ---g~~p~~R~~hs~v~~-~~~-iyV~GG~~ 261 (578)
|.....-.+...+++ ++- -|+|||.+
T Consensus 304 IYqG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 304 IYQGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred eeccccccccccceeEEEECCEEEEEecCcc
Confidence 323333344444444 454 46888864
No 134
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=52.12 E-value=2.8e+02 Score=28.42 Aligned_cols=231 Identities=11% Similarity=0.024 Sum_probs=100.5
Q ss_pred EEEcCCCEEEEEcCCCCCCCCcccEEEEEcC-CCcEEEeeecCCCCCC-CcceeEEEECC-EEEEEcccCCCCCCCcEEE
Q 008089 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTV-NQTWSQPVIKGSPPTP-RDSHSCTTVGE-NLYVFGGTDGMNPLRDLHI 114 (578)
Q Consensus 38 v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~-t~~W~~l~~~g~~P~~-R~~hs~~~~~~-kIYv~GG~~~~~~~~~v~~ 114 (578)
++-.+++.||+.+. . .+.+..|+.. ++++..+. ..+.+ ...|.+..-++ .+|+.. .. -+.+.+
T Consensus 41 ~~spd~~~lyv~~~-~-----~~~i~~~~~~~~g~l~~~~---~~~~~~~p~~i~~~~~g~~l~v~~-~~----~~~v~v 106 (330)
T PRK11028 41 VISPDKRHLYVGVR-P-----EFRVLSYRIADDGALTFAA---ESPLPGSPTHISTDHQGRFLFSAS-YN----ANCVSV 106 (330)
T ss_pred EECCCCCEEEEEEC-C-----CCcEEEEEECCCCceEEee---eecCCCCceEEEECCCCCEEEEEE-cC----CCeEEE
Confidence 34446667777443 2 2457777775 45565433 12221 11222222244 466653 21 246778
Q ss_pred EECCCCe-E-EecccCCCCCCCCcccEEEEE-C-CEEEEEccCCCCCCCCCceeeceEEEEEcCcc-eEEEec-cCCCCC
Q 008089 115 LDTSSHT-W-ISPSVRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWKRAT-TSGNPP 188 (578)
Q Consensus 115 yD~~t~~-W-~~l~~~g~~P~~R~~hs~~~~-~-~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~-~W~~~~-~~g~~p 188 (578)
|++.++. . ..+. ..+....-|.+++. + +.+|+..- ..+.+.+||+.+. ...... .....+
T Consensus 107 ~~~~~~g~~~~~~~---~~~~~~~~~~~~~~p~g~~l~v~~~-----------~~~~v~v~d~~~~g~l~~~~~~~~~~~ 172 (330)
T PRK11028 107 SPLDKDGIPVAPIQ---IIEGLEGCHSANIDPDNRTLWVPCL-----------KEDRIRLFTLSDDGHLVAQEPAEVTTV 172 (330)
T ss_pred EEECCCCCCCCcee---eccCCCcccEeEeCCCCCEEEEeeC-----------CCCEEEEEEECCCCcccccCCCceecC
Confidence 8875431 1 1111 11222233555444 2 35666432 1356888888753 222100 000011
Q ss_pred CCCCceeEEEe--CCEEEEEecCCCCCcccCceEEEECC--CCceEEecCCCCC----CCCCceeEEEEeC--CEEEEEc
Q 008089 189 SARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTD--TLTWKELNTSGMV----LSPRAGHSTVAFG--KNLFVFG 258 (578)
Q Consensus 189 ~~R~~h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~--t~~W~~v~~~g~~----p~~R~~hs~v~~~--~~iyV~G 258 (578)
....-+.++.. +..+|+... ..+.+.+||+. +.+++.+...... +.+|....+.... ..+|+..
T Consensus 173 ~g~~p~~~~~~pdg~~lyv~~~------~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~ 246 (330)
T PRK11028 173 EGAGPRHMVFHPNQQYAYCVNE------LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD 246 (330)
T ss_pred CCCCCceEEECCCCCEEEEEec------CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec
Confidence 11111223333 346777632 23557777765 4455444332112 2234332333333 3466642
Q ss_pred CccCCCCccCcEEEEECC--CCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEc
Q 008089 259 GFTDSQNLYDDLYMIDVD--SGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIG 313 (578)
Q Consensus 259 G~~~~~~~~~dv~~ydi~--t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~G 313 (578)
.. .+.+.+|++. ...++.+.....+..++.. .+ ...+..||+..
T Consensus 247 ~~------~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~----~~-~~dg~~l~va~ 292 (330)
T PRK11028 247 RT------ASLISVFSVSEDGSVLSFEGHQPTETQPRGF----NI-DHSGKYLIAAG 292 (330)
T ss_pred CC------CCeEEEEEEeCCCCeEEEeEEEeccccCCce----EE-CCCCCEEEEEE
Confidence 21 2457777764 3455554433222233311 12 24566777754
No 135
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=52.07 E-value=2.9e+02 Score=28.49 Aligned_cols=186 Identities=11% Similarity=0.043 Sum_probs=95.7
Q ss_pred cEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEE
Q 008089 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSA 140 (578)
Q Consensus 61 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~ 140 (578)
.+-++|+++..-++.+...+++..-....+.--.++++..|-..-.+ ++|+.++.-+..+ .|..-.-..+
T Consensus 125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yG------rLdPa~~~i~vfp----aPqG~gpyGi 194 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYG------RLDPARNVISVFP----APQGGGPYGI 194 (353)
T ss_pred eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccce------ecCcccCceeeec----cCCCCCCcce
Confidence 67889998887777654333333333222222245677776321111 4566555433221 1222222333
Q ss_pred EE-ECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCcee--E-EEeCCEEEEEecCCCCCccc
Q 008089 141 AL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT--C-SSWKNKIIVIGGEDGHDYYL 216 (578)
Q Consensus 141 ~~-~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~--~-~~~~~~lyV~GG~~~~~~~~ 216 (578)
|+ -++.+|+.-= +-|-+-+.|+.+..=+.+.. |......+ + +---+++++.- .-.
T Consensus 195 ~atpdGsvwyasl-----------agnaiaridp~~~~aev~p~----P~~~~~gsRriwsdpig~~witt------wg~ 253 (353)
T COG4257 195 CATPDGSVWYASL-----------AGNAIARIDPFAGHAEVVPQ----PNALKAGSRRIWSDPIGRAWITT------WGT 253 (353)
T ss_pred EECCCCcEEEEec-----------cccceEEcccccCCcceecC----CCcccccccccccCccCcEEEec------cCC
Confidence 33 4667776421 12445667777665444432 22211111 1 11134566641 123
Q ss_pred CceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEe
Q 008089 217 SDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 217 ~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~ 285 (578)
..++.||+....|.+....+.. +|-...-+--.+.+++.- --.+.|.+||+++.+.+.+..
T Consensus 254 g~l~rfdPs~~sW~eypLPgs~--arpys~rVD~~grVW~se------a~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 254 GSLHRFDPSVTSWIEYPLPGSK--ARPYSMRVDRHGRVWLSE------ADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred ceeeEeCcccccceeeeCCCCC--CCcceeeeccCCcEEeec------cccCceeecCcccceEEEecC
Confidence 4589999999999998753322 333333333335555521 123568999999999888743
No 136
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=51.21 E-value=4.8e+02 Score=30.86 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=32.8
Q ss_pred CcccCceEEEECCCCc--eEEecCCCC-----CCCCCceeEEEEeCCE---EEEEcCccCCCCccCcEEEEECCCCc
Q 008089 213 DYYLSDVHILDTDTLT--WKELNTSGM-----VLSPRAGHSTVAFGKN---LFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 213 ~~~~~di~~yD~~t~~--W~~v~~~g~-----~p~~R~~hs~v~~~~~---iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
+.+.+.+..+|++|.+ |..-....+ .+..-........+++ +++.+..+ ..+|++|.++++
T Consensus 410 n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~------G~~~vlDr~tG~ 480 (764)
T TIGR03074 410 EKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQ------GQIYVLDRRTGE 480 (764)
T ss_pred ccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCC------CEEEEEECCCCC
Confidence 3467789999998764 766443211 1111111111111442 56666543 348999999874
No 137
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=50.23 E-value=3.3e+02 Score=28.71 Aligned_cols=185 Identities=14% Similarity=0.160 Sum_probs=95.5
Q ss_pred CCCCCCC----cceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECC-EEEEE
Q 008089 26 SSGPGKR----WGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGE-NLYVF 100 (578)
Q Consensus 26 g~~P~~R----~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-kIYv~ 100 (578)
|..|.+| ..|.+....++++|++.- . -.+.++.|++..+........--.|..--.|-+.--++ .+|++
T Consensus 135 g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D-L-----G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v 208 (346)
T COG2706 135 GSGPHERQESPHVHSANFTPDGRYLVVPD-L-----GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLV 208 (346)
T ss_pred CCCCCccccCCccceeeeCCCCCEEEEee-c-----CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEE
Confidence 4446666 468888888887665531 1 23568999998776654321111122122233333344 47888
Q ss_pred cccCCCCCCCcEEEEECCCCeEEecccCCCCCCC----CcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEE--E
Q 008089 101 GGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEA----REGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYIL--N 172 (578)
Q Consensus 101 GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~----R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~y--d 172 (578)
.=.+ ..-++|.||....+.+.++....+|.. +...+..+. +..||+.-- ..+.+.+| |
T Consensus 209 ~EL~---stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR-----------g~dsI~~f~V~ 274 (346)
T COG2706 209 NELN---STVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR-----------GHDSIAVFSVD 274 (346)
T ss_pred eccC---CEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC-----------CCCeEEEEEEc
Confidence 6432 234577888877888887765555543 222222222 345777422 13344444 5
Q ss_pred cCcceEEEeccCC-CCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCC
Q 008089 173 TETFVWKRATTSG-NPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS 235 (578)
Q Consensus 173 ~~t~~W~~~~~~g-~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~ 235 (578)
+.+..-..+.... ....||.+ .+. .++++++.-+.++.. -.++.-|.++++-..+...
T Consensus 275 ~~~g~L~~~~~~~teg~~PR~F-~i~-~~g~~Liaa~q~sd~---i~vf~~d~~TG~L~~~~~~ 333 (346)
T COG2706 275 PDGGKLELVGITPTEGQFPRDF-NIN-PSGRFLIAANQKSDN---ITVFERDKETGRLTLLGRY 333 (346)
T ss_pred CCCCEEEEEEEeccCCcCCccc-eeC-CCCCEEEEEccCCCc---EEEEEEcCCCceEEecccc
Confidence 5555544432211 22335543 222 244444444444332 1245557788887777653
No 138
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=49.54 E-value=3.1e+02 Score=28.17 Aligned_cols=138 Identities=14% Similarity=0.085 Sum_probs=74.0
Q ss_pred CEEEEEcCC-C--CCCCCc-ccEEEEEcCCC-----cEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEE
Q 008089 44 RFLYVFGGY-G--KDNCQT-NQVHVFDTVNQ-----TWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHI 114 (578)
Q Consensus 44 ~~Iyv~GG~-~--~~~~~~-~~v~~yD~~t~-----~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~ 114 (578)
..++++|.. . .+.... ..+++|+.... +++.+. ....+-.-.+++.++++|.+.-| +.+++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v 111 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH---STEVKGPVTAICSFNGRLVVAVG-------NKLYV 111 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEETTEEEEEET-------TEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhhCCEEEEeec-------CEEEE
Confidence 345566643 2 222123 67999999884 454432 12222335667777888666655 46888
Q ss_pred EECCCCe-EEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCc
Q 008089 115 LDTSSHT-WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (578)
Q Consensus 115 yD~~t~~-W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~ 193 (578)
|++...+ +.+.. ....+-.-.++...++.|++ |-..+ .-.++.|+....+...+.- ...++..
T Consensus 112 ~~l~~~~~l~~~~---~~~~~~~i~sl~~~~~~I~v-gD~~~---------sv~~~~~~~~~~~l~~va~---d~~~~~v 175 (321)
T PF03178_consen 112 YDLDNSKTLLKKA---FYDSPFYITSLSVFKNYILV-GDAMK---------SVSLLRYDEENNKLILVAR---DYQPRWV 175 (321)
T ss_dssp EEEETTSSEEEEE---EE-BSSSEEEEEEETTEEEE-EESSS---------SEEEEEEETTTE-EEEEEE---ESS-BEE
T ss_pred EEccCcccchhhh---eecceEEEEEEeccccEEEE-EEccc---------CEEEEEEEccCCEEEEEEe---cCCCccE
Confidence 8888777 76544 22233355566677786665 43211 1234566776666666652 2334555
Q ss_pred eeEEEe-CCEEEEEec
Q 008089 194 HTCSSW-KNKIIVIGG 208 (578)
Q Consensus 194 h~~~~~-~~~lyV~GG 208 (578)
.++..+ ++. .++++
T Consensus 176 ~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 176 TAAEFLVDED-TIIVG 190 (321)
T ss_dssp EEEEEE-SSS-EEEEE
T ss_pred EEEEEecCCc-EEEEE
Confidence 555555 554 34443
No 139
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=46.66 E-value=1.5e+02 Score=28.54 Aligned_cols=77 Identities=16% Similarity=0.222 Sum_probs=46.3
Q ss_pred cCCCCCcccCceEEEECCCCceEEecCCCC--CCCCCceeEEEEeCCE-EEEEcCccCCCCccCcEEEEECCCCcEEEEE
Q 008089 208 GEDGHDYYLSDVHILDTDTLTWKELNTSGM--VLSPRAGHSTVAFGKN-LFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (578)
Q Consensus 208 G~~~~~~~~~di~~yD~~t~~W~~v~~~g~--~p~~R~~hs~v~~~~~-iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~ 284 (578)
|.+....-..+||++|..++.|..+..... .-.|. .....-+.. ++|+|...+.-.--..||+|++.++.-..+.
T Consensus 79 g~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly 156 (200)
T PF15525_consen 79 GPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK--YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELY 156 (200)
T ss_pred CCccccccceeEEEEecCCCceEEEEecCcccccCCc--eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEee
Confidence 344444457789999999888887754221 22333 222333444 4555533222222456999999999988887
Q ss_pred eC
Q 008089 285 TT 286 (578)
Q Consensus 285 ~~ 286 (578)
..
T Consensus 157 ~~ 158 (200)
T PF15525_consen 157 EW 158 (200)
T ss_pred ec
Confidence 65
No 140
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=44.76 E-value=3.7e+02 Score=27.85 Aligned_cols=143 Identities=20% Similarity=0.210 Sum_probs=0.0
Q ss_pred EEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCce
Q 008089 140 AALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDV 219 (578)
Q Consensus 140 ~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di 219 (578)
.+..+++|+|.-.+. +++=..+ ++|....-.++....+.++..||.++. +
T Consensus 72 SaSqDGklIvWDs~T--------------------tnK~hai----pl~s~WVMtCA~sPSg~~VAcGGLdN~------C 121 (343)
T KOG0286|consen 72 SASQDGKLIVWDSFT--------------------TNKVHAI----PLPSSWVMTCAYSPSGNFVACGGLDNK------C 121 (343)
T ss_pred eeccCCeEEEEEccc--------------------ccceeEE----ecCceeEEEEEECCCCCeEEecCcCce------e
Q ss_pred EEEECC-CCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeE
Q 008089 220 HILDTD-TLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAG 298 (578)
Q Consensus 220 ~~yD~~-t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~ 298 (578)
-+|++. ...=-.+...-.++....+.+++.+-+.--|+-|..+.. +..||+++..=...-.-..+......++
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~T-----CalWDie~g~~~~~f~GH~gDV~slsl~- 195 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMT-----CALWDIETGQQTQVFHGHTGDVMSLSLS- 195 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCce-----EEEEEcccceEEEEecCCcccEEEEecC-
Q ss_pred eeeeccCCCEEEEEccccCCCCccC
Q 008089 299 DCLDPLKGGVLVFIGGCNKSLEALD 323 (578)
Q Consensus 299 ~~~~~~~~~~l~v~GG~~~~~~~~~ 323 (578)
+.+...||.||+++.....+
T Consensus 196 -----p~~~ntFvSg~cD~~aklWD 215 (343)
T KOG0286|consen 196 -----PSDGNTFVSGGCDKSAKLWD 215 (343)
T ss_pred -----CCCCCeEEecccccceeeee
No 141
>PRK01029 tolB translocation protein TolB; Provisional
Probab=43.90 E-value=4.6e+02 Score=28.48 Aligned_cols=75 Identities=19% Similarity=0.147 Sum_probs=42.3
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCE-EEEEcCccCCCCccCcEEEEECCCC
Q 008089 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKN-LFVFGGFTDSQNLYDDLYMIDVDSG 278 (578)
Q Consensus 200 ~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~-iyV~GG~~~~~~~~~dv~~ydi~t~ 278 (578)
+++.++|.....+ ..++++||+++...+.+... +. ........-+++ |++.... .. ...+|.+|+.++
T Consensus 337 DG~~Laf~~~~~g---~~~I~v~dl~~g~~~~Lt~~---~~-~~~~p~wSpDG~~L~f~~~~-~g---~~~L~~vdl~~g 405 (428)
T PRK01029 337 DGKKIAFCSVIKG---VRQICVYDLATGRDYQLTTS---PE-NKESPSWAIDSLHLVYSAGN-SN---ESELYLISLITK 405 (428)
T ss_pred CCCEEEEEEcCCC---CcEEEEEECCCCCeEEccCC---CC-CccceEECCCCCEEEEEECC-CC---CceEEEEECCCC
Confidence 5554444433222 24799999999988877541 11 111112222444 4443332 11 257999999999
Q ss_pred cEEEEEe
Q 008089 279 LWTKVIT 285 (578)
Q Consensus 279 ~W~~l~~ 285 (578)
..+.+..
T Consensus 406 ~~~~Lt~ 412 (428)
T PRK01029 406 KTRKIVI 412 (428)
T ss_pred CEEEeec
Confidence 8888754
No 142
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=43.54 E-value=4.6e+02 Score=28.63 Aligned_cols=108 Identities=17% Similarity=0.121 Sum_probs=59.6
Q ss_pred eceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCce
Q 008089 165 YNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAG 244 (578)
Q Consensus 165 ~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~ 244 (578)
..++|++|+.+..-.++.. ...+..+....-+++-+||.--.++ ..+|+++|++...=+.+...+ ....
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~----~~gi~~~Ps~spdG~~ivf~Sdr~G---~p~I~~~~~~g~~~~riT~~~----~~~~ 329 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTN----GFGINTSPSWSPDGSKIVFTSDRGG---RPQIYLYDLEGSQVTRLTFSG----GGNS 329 (425)
T ss_pred CccEEEEcCCCCcceeccc----CCccccCccCCCCCCEEEEEeCCCC---CcceEEECCCCCceeEeeccC----CCCc
Confidence 4679999998877444431 2223333333445554554321111 237999999988777775422 1111
Q ss_pred eEEEEeCC-EEEEEcCccCCCCccCcEEEEECCCCc-EEEEEeCC
Q 008089 245 HSTVAFGK-NLFVFGGFTDSQNLYDDLYMIDVDSGL-WTKVITTG 287 (578)
Q Consensus 245 hs~v~~~~-~iyV~GG~~~~~~~~~dv~~ydi~t~~-W~~l~~~~ 287 (578)
+-...-++ +|.+.+ ...+. -++..+|+.+.. |+.+....
T Consensus 330 ~p~~SpdG~~i~~~~-~~~g~---~~i~~~~~~~~~~~~~lt~~~ 370 (425)
T COG0823 330 NPVWSPDGDKIVFES-SSGGQ---WDIDKNDLASGGKIRILTSTY 370 (425)
T ss_pred CccCCCCCCEEEEEe-ccCCc---eeeEEeccCCCCcEEEccccc
Confidence 22333333 444444 33211 568899998877 88876543
No 143
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=42.56 E-value=3.7e+02 Score=27.12 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=60.3
Q ss_pred CCCCCCcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEEC-CEEEEEcccCC
Q 008089 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVG-ENLYVFGGTDG 105 (578)
Q Consensus 27 ~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~kIYv~GG~~~ 105 (578)
..|.|-.+.-.+.-. .+.|++.||- ..+|..|+++++..+.- .|. .-+-|+++.-+ +-=.+.|+.++
T Consensus 111 ~~evPeINam~ldP~-enSi~~AgGD-------~~~y~~dlE~G~i~r~~-rGH---tDYvH~vv~R~~~~qilsG~EDG 178 (325)
T KOG0649|consen 111 AVEVPEINAMWLDPS-ENSILFAGGD-------GVIYQVDLEDGRIQREY-RGH---TDYVHSVVGRNANGQILSGAEDG 178 (325)
T ss_pred cccCCccceeEeccC-CCcEEEecCC-------eEEEEEEecCCEEEEEE-cCC---cceeeeeeecccCcceeecCCCc
Confidence 455555555444333 4468888873 35899999999887632 332 23445555432 22345566555
Q ss_pred CCCCCcEEEEECCCCeEEecc-c--CCCCCCCCccc--EEEEECCEEEEEcc
Q 008089 106 MNPLRDLHILDTSSHTWISPS-V--RGEGPEAREGH--SAALVGKRLFIFGG 152 (578)
Q Consensus 106 ~~~~~~v~~yD~~t~~W~~l~-~--~g~~P~~R~~h--s~~~~~~~lyvfGG 152 (578)
. +-++|+.|.+-.++- . ..+...|..+. .+...+..-+|+||
T Consensus 179 t-----vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg 225 (325)
T KOG0649|consen 179 T-----VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG 225 (325)
T ss_pred c-----EEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC
Confidence 3 666787777654321 1 11122222444 44555666778887
No 144
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=41.71 E-value=4.9e+02 Score=28.91 Aligned_cols=91 Identities=15% Similarity=0.167 Sum_probs=46.7
Q ss_pred eEEEEEcCc----ceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCC
Q 008089 167 DLYILNTET----FVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPR 242 (578)
Q Consensus 167 dv~~yd~~t----~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R 242 (578)
.+.+||+.. ..|.+.. ..|-.+-+++-.+..|+|--|++ ..|++||+...+-...-... .|
T Consensus 188 ~VtlwDv~g~sp~~~~~~~H-----sAP~~gicfspsne~l~vsVG~D------kki~~yD~~s~~s~~~l~y~---~P- 252 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAH-----SAPCRGICFSPSNEALLVSVGYD------KKINIYDIRSQASTDRLTYS---HP- 252 (673)
T ss_pred eEEEEeccCCCcccchhhhc-----cCCcCcceecCCccceEEEeccc------ceEEEeecccccccceeeec---CC-
Confidence 355666553 3455443 12233444555577888887765 34889998765433322211 11
Q ss_pred ceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCC
Q 008089 243 AGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (578)
Q Consensus 243 ~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~ 278 (578)
..+++..++..|+.-|... ..++.||+...
T Consensus 253 -lstvaf~~~G~~L~aG~s~-----G~~i~YD~R~~ 282 (673)
T KOG4378|consen 253 -LSTVAFSECGTYLCAGNSK-----GELIAYDMRST 282 (673)
T ss_pred -cceeeecCCceEEEeecCC-----ceEEEEecccC
Confidence 1122333344444444322 34899998764
No 145
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=41.46 E-value=3.6e+02 Score=26.64 Aligned_cols=229 Identities=18% Similarity=0.239 Sum_probs=104.2
Q ss_pred CCcEEEeeecCCCC--CCCcceeEEEE--CCEEEEEc--ccCCCC--CCCcEEEEECC-CCeEEeccc-CC----CCCCC
Q 008089 69 NQTWSQPVIKGSPP--TPRDSHSCTTV--GENLYVFG--GTDGMN--PLRDLHILDTS-SHTWISPSV-RG----EGPEA 134 (578)
Q Consensus 69 t~~W~~l~~~g~~P--~~R~~hs~~~~--~~kIYv~G--G~~~~~--~~~~v~~yD~~-t~~W~~l~~-~g----~~P~~ 134 (578)
..+|..+......+ ..+....+.+. +++|++|- +..... ...-.+..... -.+|+.... .. ..+.+
T Consensus 29 G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~ 108 (275)
T PF13088_consen 29 GKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGP 108 (275)
T ss_dssp TTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEEC
T ss_pred CCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceecc
Confidence 46799876543444 23333333333 78888886 222211 11112344444 357987541 10 11111
Q ss_pred CcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEE--eCCEEEEEecCCCC
Q 008089 135 REGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS--WKNKIIVIGGEDGH 212 (578)
Q Consensus 135 R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~--~~~~lyV~GG~~~~ 212 (578)
-.+.....-++++++. .+.. .......-++.-+-...+|....... ........+.+ -++.|+++--.. .
T Consensus 109 ~~~~~i~~~~G~l~~~-~~~~----~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~ 180 (275)
T PF13088_consen 109 GRGPPIQLPDGRLIAP-YYHE----SGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-G 180 (275)
T ss_dssp SEEEEEEECTTEEEEE-EEEE----SSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-S
T ss_pred ceeeeeEecCCCEEEE-Eeec----cccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-C
Confidence 2222244447787776 2111 11112222333344456798886432 11122233333 267888875332 1
Q ss_pred CcccCceEEEECC-CCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCC
Q 008089 213 DYYLSDVHILDTD-TLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGP 290 (578)
Q Consensus 213 ~~~~~di~~yD~~-t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P 290 (578)
.. .-.+.+... ..+|+..... ..|.+.....++.. ++.++++..... ....-.+++-.-...+|.........+
T Consensus 181 ~~--~~~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~-~r~~l~l~~S~D~g~tW~~~~~i~~~~ 256 (275)
T PF13088_consen 181 ND--DIYISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPD-GRSNLSLYVSEDGGKTWSRPKTIDDGP 256 (275)
T ss_dssp ST--EEEEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSS-TSEEEEEEEECTTCEEEEEEEEEEEEE
T ss_pred CC--cEEEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCC-CCCceEEEEEeCCCCcCCccEEEeCCC
Confidence 11 223333333 5679986532 24555555555554 457777776211 111222344444467899765543334
Q ss_pred CCceeeeEeeeeccCCCEEEE
Q 008089 291 SARFSVAGDCLDPLKGGVLVF 311 (578)
Q Consensus 291 ~~r~~~~~~~~~~~~~~~l~v 311 (578)
...++....+. ..++.|+|
T Consensus 257 ~~~~~Y~~~~~--~~dg~l~i 275 (275)
T PF13088_consen 257 NGDSGYPSLTQ--LPDGKLYI 275 (275)
T ss_dssp -CCEEEEEEEE--EETTEEEE
T ss_pred CCcEECCeeEE--eCCCcCCC
Confidence 33344443332 34667765
No 146
>PRK01742 tolB translocation protein TolB; Provisional
Probab=40.40 E-value=5e+02 Score=27.99 Aligned_cols=141 Identities=12% Similarity=0.094 Sum_probs=68.7
Q ss_pred CcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCC
Q 008089 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 189 (578)
Q Consensus 110 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~ 189 (578)
..++++|+.+..-+.+.. .+. .........+++.++++... .+ ..++|.+|+.+.....+... .
T Consensus 228 ~~i~i~dl~tg~~~~l~~---~~g-~~~~~~wSPDG~~La~~~~~-----~g---~~~Iy~~d~~~~~~~~lt~~---~- 291 (429)
T PRK01742 228 SQLVVHDLRSGARKVVAS---FRG-HNGAPAFSPDGSRLAFASSK-----DG---VLNIYVMGANGGTPSQLTSG---A- 291 (429)
T ss_pred cEEEEEeCCCCceEEEec---CCC-ccCceeECCCCCEEEEEEec-----CC---cEEEEEEECCCCCeEeeccC---C-
Confidence 469999998876554431 111 11112222344444443310 01 13588999988877766421 1
Q ss_pred CCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCC-EEEEEcCccCCCCccC
Q 008089 190 ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGK-NLFVFGGFTDSQNLYD 268 (578)
Q Consensus 190 ~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~-~iyV~GG~~~~~~~~~ 268 (578)
..........+++.++|.....+ ...+|.++..+..-+.+... .. .....-++ .|++.++ +
T Consensus 292 ~~~~~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~~~------~~-~~~~SpDG~~ia~~~~--------~ 353 (429)
T PRK01742 292 GNNTEPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASLVGGR------GY-SAQISADGKTLVMING--------D 353 (429)
T ss_pred CCcCCEEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEecCC------CC-CccCCCCCCEEEEEcC--------C
Confidence 11111222235554444332111 13677888766544433210 11 11222233 4444433 3
Q ss_pred cEEEEECCCCcEEEEE
Q 008089 269 DLYMIDVDSGLWTKVI 284 (578)
Q Consensus 269 dv~~ydi~t~~W~~l~ 284 (578)
.++++|+.++.+..+.
T Consensus 354 ~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 354 NVVKQDLTSGSTEVLS 369 (429)
T ss_pred CEEEEECCCCCeEEec
Confidence 5888999999988764
No 147
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=39.38 E-value=5.7e+02 Score=28.30 Aligned_cols=186 Identities=15% Similarity=0.113 Sum_probs=95.4
Q ss_pred cccEEEEEcCCCcEEEeeecCCCCCCCcc-------------eeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEec
Q 008089 59 TNQVHVFDTVNQTWSQPVIKGSPPTPRDS-------------HSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISP 125 (578)
Q Consensus 59 ~~~v~~yD~~t~~W~~l~~~g~~P~~R~~-------------hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l 125 (578)
-.++|.||+.+..-+++.+. +|..|.- .-+.+-++.|-++. ....+++++..+--.++
T Consensus 286 ~GdIylydP~td~lekldI~--lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-------RGkaFi~~~~~~~~iqv 356 (668)
T COG4946 286 AGDIYLYDPETDSLEKLDIG--LPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-------RGKAFIMRPWDGYSIQV 356 (668)
T ss_pred CCcEEEeCCCcCcceeeecC--CccccccccccccCHHHhhhhhccCCCcEEEEEe-------cCcEEEECCCCCeeEEc
Confidence 35899999999999988753 2222211 01111123332221 12355555433322222
Q ss_pred ccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEE
Q 008089 126 SVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIV 205 (578)
Q Consensus 126 ~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV 205 (578)
. ....-|+.+- ..++.-.++|-.. -..+.+||..+..-+.+. .+..+.....+.-+++.++
T Consensus 357 ~---~~~~VrY~r~--~~~~e~~vigt~d----------gD~l~iyd~~~~e~kr~e----~~lg~I~av~vs~dGK~~v 417 (668)
T COG4946 357 G---KKGGVRYRRI--QVDPEGDVIGTND----------GDKLGIYDKDGGEVKRIE----KDLGNIEAVKVSPDGKKVV 417 (668)
T ss_pred C---CCCceEEEEE--ccCCcceEEeccC----------CceEEEEecCCceEEEee----CCccceEEEEEcCCCcEEE
Confidence 2 1111222222 2233355665532 135778898888877774 3445544444445667666
Q ss_pred EecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeE--EEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEE
Q 008089 206 IGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHS--TVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (578)
Q Consensus 206 ~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs--~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l 283 (578)
.+-.. -++|++|++++.-+.+... |.+.- .+.+.+.-++.=++- .+-+...|.+||+.+.+-..+
T Consensus 418 vaNdr------~el~vididngnv~~idkS------~~~lItdf~~~~nsr~iAYafP-~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 418 VANDR------FELWVIDIDNGNVRLIDKS------EYGLITDFDWHPNSRWIAYAFP-EGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred EEcCc------eEEEEEEecCCCeeEeccc------ccceeEEEEEcCCceeEEEecC-cceeeeeEEEEecCCCeEEEe
Confidence 54321 3599999999887776541 11111 223344433333332 223456788888888765555
Q ss_pred Ee
Q 008089 284 IT 285 (578)
Q Consensus 284 ~~ 285 (578)
.+
T Consensus 485 TT 486 (668)
T COG4946 485 TT 486 (668)
T ss_pred cC
Confidence 43
No 148
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=39.04 E-value=5.1e+02 Score=27.61 Aligned_cols=147 Identities=12% Similarity=0.163 Sum_probs=75.8
Q ss_pred EcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeE--EEECCEEEEEcccCCCCCCCcEEEEEC
Q 008089 40 IKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSC--TTVGENLYVFGGTDGMNPLRDLHILDT 117 (578)
Q Consensus 40 v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~--~~~~~kIYv~GG~~~~~~~~~v~~yD~ 117 (578)
+..++.+.+.||.+ +..|+++..++.|-- .++.-...-.+ ...++.+..-||.++. +.+|..
T Consensus 72 l~P~~~l~aTGGgD------D~AflW~~~~ge~~~-----eltgHKDSVt~~~FshdgtlLATGdmsG~-----v~v~~~ 135 (399)
T KOG0296|consen 72 LHPNNNLVATGGGD------DLAFLWDISTGEFAG-----ELTGHKDSVTCCSFSHDGTLLATGDMSGK-----VLVFKV 135 (399)
T ss_pred eCCCCceEEecCCC------ceEEEEEccCCccee-----EecCCCCceEEEEEccCceEEEecCCCcc-----EEEEEc
Confidence 33345588888854 347899998888654 22222233233 3347788888887654 555554
Q ss_pred CC--CeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCce
Q 008089 118 SS--HTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSH 194 (578)
Q Consensus 118 ~t--~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h 194 (578)
.+ .+|.......++.= +... ...++++|-- ...+|+|.+.+..-.++-. .+..+...
T Consensus 136 stg~~~~~~~~e~~dieW------l~WHp~a~illAG~~-----------DGsvWmw~ip~~~~~kv~~---Gh~~~ct~ 195 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEW------LKWHPRAHILLAGST-----------DGSVWMWQIPSQALCKVMS---GHNSPCTC 195 (399)
T ss_pred ccCceEEEeecccCceEE------EEecccccEEEeecC-----------CCcEEEEECCCcceeeEec---CCCCCccc
Confidence 44 34644321111100 0011 1235555551 2457888887754444321 12333333
Q ss_pred eEEEeCCEEEEEecCCCCCcccCceEEEECCCCc
Q 008089 195 TCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT 228 (578)
Q Consensus 195 ~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~ 228 (578)
....-+++..+.|=.+ ..+.++|+++.+
T Consensus 196 G~f~pdGKr~~tgy~d------gti~~Wn~ktg~ 223 (399)
T KOG0296|consen 196 GEFIPDGKRILTGYDD------GTIIVWNPKTGQ 223 (399)
T ss_pred ccccCCCceEEEEecC------ceEEEEecCCCc
Confidence 3444456655554322 237778888763
No 149
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=38.94 E-value=5.2e+02 Score=27.73 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=56.6
Q ss_pred CCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEeccc--CCCCCCCC--cccEEEEEC
Q 008089 69 NQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSV--RGEGPEAR--EGHSAALVG 144 (578)
Q Consensus 69 t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~--~g~~P~~R--~~hs~~~~~ 144 (578)
.+.|+.+. . ..-..--++.++|++|.+.- ...++.++..- +-.++.+ .+.+...+ ...-.+...
T Consensus 189 ~~~Wt~l~---~--~~~~~~DIi~~kGkfYAvD~------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~ 256 (373)
T PLN03215 189 GNVLKALK---Q--MGYHFSDIIVHKGQTYALDS------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECC 256 (373)
T ss_pred CCeeeEcc---C--CCceeeEEEEECCEEEEEcC------CCeEEEEecCC-ceeeecceecccccCCcccCceeEEEEC
Confidence 37899864 2 22335567788999999831 23577777321 1111110 01111111 123355667
Q ss_pred CEEEEEccCCCCCCC--------CCceeeceEEEEEcCcceEEEeccCC
Q 008089 145 KRLFIFGGCGKSSNT--------NDEVYYNDLYILNTETFVWKRATTSG 185 (578)
Q Consensus 145 ~~lyvfGG~~~~~~~--------~~~~~~ndv~~yd~~t~~W~~~~~~g 185 (578)
+.||++..+...... ......-.+|.+|.+..+|.++...+
T Consensus 257 GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 257 GELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred CEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 889988775321100 01122346777898899999998654
No 150
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=38.71 E-value=4.8e+02 Score=27.98 Aligned_cols=100 Identities=14% Similarity=0.167 Sum_probs=54.7
Q ss_pred cceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecC--CCCCCCCC--ceeEEEEe
Q 008089 175 TFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT--SGMVLSPR--AGHSTVAF 250 (578)
Q Consensus 175 t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~--~g~~p~~R--~~hs~v~~ 250 (578)
.+.|..+.. .....--++.++|++|++. ....++.++.+- .-.++.+ .+.+...+ ...-.+..
T Consensus 189 ~~~Wt~l~~-----~~~~~~DIi~~kGkfYAvD-------~~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs 255 (373)
T PLN03215 189 GNVLKALKQ-----MGYHFSDIIVHKGQTYALD-------SIGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVEC 255 (373)
T ss_pred CCeeeEccC-----CCceeeEEEEECCEEEEEc-------CCCeEEEEecCC-ceeeecceecccccCCcccCceeEEEE
Confidence 379998852 1222345677899999982 224467776431 1122211 01111111 11224555
Q ss_pred CCEEEEEcCccCCCC-------------ccCcEEEEECCCCcEEEEEeCC
Q 008089 251 GKNLFVFGGFTDSQN-------------LYDDLYMIDVDSGLWTKVITTG 287 (578)
Q Consensus 251 ~~~iyV~GG~~~~~~-------------~~~dv~~ydi~t~~W~~l~~~~ 287 (578)
.+.++++..+..... ..=.||.+|.+..+|.++...+
T Consensus 256 ~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 256 CGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred CCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 678888887532110 1124677788889999987753
No 151
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=35.55 E-value=6.2e+02 Score=27.64 Aligned_cols=93 Identities=19% Similarity=0.219 Sum_probs=49.6
Q ss_pred cEEEEEcCCC-cEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCccc
Q 008089 61 QVHVFDTVNQ-TWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGH 138 (578)
Q Consensus 61 ~v~~yD~~t~-~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 138 (578)
.+.++|.... .-.+ ...| ++... ++++.. .+.+++.|+.++ .|.++|+.+.+-.+. +..-...-
T Consensus 226 tiriwd~~~~~~~~~-~l~g-H~~~v--~~~~f~p~g~~i~Sgs~D~-----tvriWd~~~~~~~~~-----l~~hs~~i 291 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLK-TLKG-HSTYV--TSVAFSPDGNLLVSGSDDG-----TVRIWDVRTGECVRK-----LKGHSDGI 291 (456)
T ss_pred eEEEeeccCCCeEEE-EecC-CCCce--EEEEecCCCCEEEEecCCC-----cEEEEeccCCeEEEe-----eeccCCce
Confidence 4778888433 2222 1122 22222 333333 457899988765 488888888554331 11111122
Q ss_pred EEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceE
Q 008089 139 SAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW 178 (578)
Q Consensus 139 s~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W 178 (578)
+++.. ++.+++.+.+ ...+.+||+.+..-
T Consensus 292 s~~~f~~d~~~l~s~s~-----------d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 292 SGLAFSPDGNLLVSASY-----------DGTIRVWDLETGSK 322 (456)
T ss_pred EEEEECCCCCEEEEcCC-----------CccEEEEECCCCce
Confidence 23333 4567776653 35577888887773
No 152
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=35.13 E-value=4.4e+02 Score=27.90 Aligned_cols=88 Identities=15% Similarity=0.315 Sum_probs=53.2
Q ss_pred EEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEE
Q 008089 168 LYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHST 247 (578)
Q Consensus 168 v~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~ 247 (578)
+-.++..+...... ...-+.+-+|..++++++|-|..+ +.|-.||++.+.--.+-. |... .--+
T Consensus 342 ikvW~~st~efvRt-----l~gHkRGIAClQYr~rlvVSGSSD------ntIRlwdi~~G~cLRvLe-GHEe----LvRc 405 (499)
T KOG0281|consen 342 IKVWSTSTCEFVRT-----LNGHKRGIACLQYRDRLVVSGSSD------NTIRLWDIECGACLRVLE-GHEE----LVRC 405 (499)
T ss_pred EEEEeccceeeehh-----hhcccccceehhccCeEEEecCCC------ceEEEEeccccHHHHHHh-chHH----hhhh
Confidence 34455555554332 233455678888999999988654 347788887664322211 1000 1126
Q ss_pred EEeCCEEEEEcCccCCCCccCcEEEEECCC
Q 008089 248 VAFGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (578)
Q Consensus 248 v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t 277 (578)
+.++++-+|-||+++. +-+||+.+
T Consensus 406 iRFd~krIVSGaYDGk------ikvWdl~a 429 (499)
T KOG0281|consen 406 IRFDNKRIVSGAYDGK------IKVWDLQA 429 (499)
T ss_pred eeecCceeeeccccce------EEEEeccc
Confidence 7789999999998653 55666554
No 153
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=35.06 E-value=5.1e+02 Score=27.43 Aligned_cols=91 Identities=20% Similarity=0.335 Sum_probs=50.3
Q ss_pred CCCCCCCcceEEEEEcCCCEEEEEcCC---CCCCCCcccEEEEEcCCCcEEEeeecCCCCC-CCcc------eeEEEE-C
Q 008089 26 SSGPGKRWGHTCNAIKGGRFLYVFGGY---GKDNCQTNQVHVFDTVNQTWSQPVIKGSPPT-PRDS------HSCTTV-G 94 (578)
Q Consensus 26 g~~P~~R~ghs~v~v~~g~~Iyv~GG~---~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~-~R~~------hs~~~~-~ 94 (578)
|..|..-.++. +.-.+++.+|+..-+ ...+.+++-+.+||..+.+-..-. .+|. +|.. ...... +
T Consensus 31 Gmi~~g~~~~~-~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI---~iP~k~R~~~~~~~~~~~ls~dg 106 (342)
T PF06433_consen 31 GMIDTGFLGNV-ALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEI---EIPPKPRAQVVPYKNMFALSADG 106 (342)
T ss_dssp EEEEEESSEEE-EE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEE---EETTS-B--BS--GGGEEE-TTS
T ss_pred EEeecccCCce-eECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceE---ecCCcchheecccccceEEccCC
Confidence 33444444553 345678888887664 222235677899999988543211 2232 2432 122222 3
Q ss_pred CEEEEEcccCCCCCCCcEEEEECCCCeEEe
Q 008089 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWIS 124 (578)
Q Consensus 95 ~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~ 124 (578)
..+||+ .-.+..++-+.|+...+...
T Consensus 107 k~~~V~----N~TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 107 KFLYVQ----NFTPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp SEEEEE----EESSSEEEEEEETTTTEEEE
T ss_pred cEEEEE----ccCCCCeEEEEECCCCceee
Confidence 456666 23456789999999888743
No 154
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=34.87 E-value=6.9e+02 Score=27.95 Aligned_cols=124 Identities=16% Similarity=0.246 Sum_probs=60.2
Q ss_pred CCCCCceeEEEe--CCEEEEEecCCCCCcccCceEEEECCCCceEEecCC--CCCCCCCceeEEE--EeCCEEEEEcCcc
Q 008089 188 PSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS--GMVLSPRAGHSTV--AFGKNLFVFGGFT 261 (578)
Q Consensus 188 p~~R~~h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~--g~~p~~R~~hs~v--~~~~~iyV~GG~~ 261 (578)
...|...+.|.+ ++++ |.+|...+. |.+++. ..|..-... .....+-..-+++ ..++++++--|.+
T Consensus 314 ~g~Rv~~tsC~~nrdg~~-iAagc~DGS-----IQ~W~~--~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D 385 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKL-IAAGCLDGS-----IQIWDK--GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFD 385 (641)
T ss_pred CCcccCceeeecCCCcch-hhhcccCCc-----eeeeec--CCcccccceEeeeccCCCCceeEEEeccccchhhhccCC
Confidence 345666666666 4566 556654432 556664 223322110 0111222223333 3356666665654
Q ss_pred CCCCccCcEEEEECCCC-----cEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEeccccc
Q 008089 262 DSQNLYDDLYMIDVDSG-----LWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 334 (578)
Q Consensus 262 ~~~~~~~dv~~ydi~t~-----~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~~~~~~ 334 (578)
+ .+-+||+... .|+-|.. ++...-+|+ ..+.+|+|.|-..........+++|+.-+.+
T Consensus 386 ~------tLKvWDLrq~kkpL~~~tgL~t-------~~~~tdc~F--SPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 386 D------TLKVWDLRQFKKPLNVRTGLPT-------PFPGTDCCF--SPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred C------ceeeeeccccccchhhhcCCCc-------cCCCCcccc--CCCceEEEecccccCCCCCceEEEEecccee
Confidence 3 3566776653 3444432 222233344 4577888888655444444456666644433
No 155
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=34.61 E-value=4.7e+02 Score=26.35 Aligned_cols=91 Identities=14% Similarity=0.268 Sum_probs=59.4
Q ss_pred ceEEEEEcCcceEEEeccCCCCCCCCCcee----EEEe--CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCC
Q 008089 166 NDLYILNTETFVWKRATTSGNPPSARDSHT----CSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVL 239 (578)
Q Consensus 166 ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~----~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p 239 (578)
..++++|..+.+-..- -.+|. ++.+ +..+++-|+.+. .+..||..+...+.+.. +.
T Consensus 81 k~v~vwDV~TGkv~Rr---------~rgH~aqVNtV~fNeesSVv~SgsfD~------s~r~wDCRS~s~ePiQi---ld 142 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRR---------FRGHLAQVNTVRFNEESSVVASGSFDS------SVRLWDCRSRSFEPIQI---LD 142 (307)
T ss_pred ceEEEEEcccCeeeee---------cccccceeeEEEecCcceEEEeccccc------eeEEEEcccCCCCccch---hh
Confidence 4577888887653221 11222 2223 345666666553 47889999888888876 66
Q ss_pred CCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcE
Q 008089 240 SPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 280 (578)
Q Consensus 240 ~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W 280 (578)
..+-+-+.+.+.++.+|-|-.++ .+..||+..++-
T Consensus 143 ea~D~V~Si~v~~heIvaGS~DG------tvRtydiR~G~l 177 (307)
T KOG0316|consen 143 EAKDGVSSIDVAEHEIVAGSVDG------TVRTYDIRKGTL 177 (307)
T ss_pred hhcCceeEEEecccEEEeeccCC------cEEEEEeeccee
Confidence 67777888888888777666543 378899887753
No 156
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=34.46 E-value=40 Score=27.01 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=24.9
Q ss_pred eeeeeeccccCCceEEEEeEcCceeeeeee
Q 008089 398 TFQAKVTESFPLGYTIETTIDGKPLRGILF 427 (578)
Q Consensus 398 ~f~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 427 (578)
..++.|..+-+|||.++.-|+| +.|+|.
T Consensus 7 ~v~g~V~si~d~G~~v~~g~~g--v~Gfl~ 34 (74)
T cd05694 7 VLSGCVSSVEDHGYILDIGIPG--TTGFLP 34 (74)
T ss_pred EEEEEEEEEeCCEEEEEeCCCC--cEEEEE
Confidence 5789999999999999988887 789885
No 157
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=34.09 E-value=5.5e+02 Score=26.62 Aligned_cols=176 Identities=14% Similarity=0.185 Sum_probs=75.9
Q ss_pred CCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCE
Q 008089 68 VNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKR 146 (578)
Q Consensus 68 ~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~ 146 (578)
....|..+. .|....-..+... .++-|++|-. ..+++=+---.+|+......+.+......++...++.
T Consensus 4 ~~~~W~~v~----l~t~~~l~dV~F~d~~~G~~VG~~------g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~ 73 (302)
T PF14870_consen 4 SGNSWQQVS----LPTDKPLLDVAFVDPNHGWAVGAY------GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNE 73 (302)
T ss_dssp SS--EEEEE-----S-SS-EEEEEESSSS-EEEEETT------TEEEEESSTTSS-EE-----S-----EEEEEEEETTE
T ss_pred cCCCcEEee----cCCCCceEEEEEecCCEEEEEecC------CEEEEECCCCccccccccCCCccceeeEEEEEecCCc
Confidence 356799875 4444455555555 4678888742 1233222223579876532221212223344456788
Q ss_pred EEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEe-CCEEEEEecCCCCCcccCceEEEECC
Q 008089 147 LFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTD 225 (578)
Q Consensus 147 lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~~ 225 (578)
.|+.|-. .-+++-.-.-.+|+++..... .+...+.+... ++.++++|.. ..|++=.=.
T Consensus 74 g~ivG~~------------g~ll~T~DgG~tW~~v~l~~~--lpgs~~~i~~l~~~~~~l~~~~-------G~iy~T~Dg 132 (302)
T PF14870_consen 74 GWIVGEP------------GLLLHTTDGGKTWERVPLSSK--LPGSPFGITALGDGSAELAGDR-------GAIYRTTDG 132 (302)
T ss_dssp EEEEEET------------TEEEEESSTTSS-EE----TT---SS-EEEEEEEETTEEEEEETT---------EEEESST
T ss_pred eEEEcCC------------ceEEEecCCCCCcEEeecCCC--CCCCeeEEEEcCCCcEEEEcCC-------CcEEEeCCC
Confidence 8888751 123444445689999864322 23333444433 5677776532 224444446
Q ss_pred CCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEE-EEECCCCcEEEEEe
Q 008089 226 TLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLY-MIDVDSGLWTKVIT 285 (578)
Q Consensus 226 t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~-~ydi~t~~W~~l~~ 285 (578)
...|+.+... .. -....+... ++++++++... .++ .+|+-...|.....
T Consensus 133 G~tW~~~~~~---~~-gs~~~~~r~~dG~~vavs~~G-------~~~~s~~~G~~~w~~~~r 183 (302)
T PF14870_consen 133 GKTWQAVVSE---TS-GSINDITRSSDGRYVAVSSRG-------NFYSSWDPGQTTWQPHNR 183 (302)
T ss_dssp TSSEEEEE-S--------EEEEEE-TTS-EEEEETTS-------SEEEEE-TT-SS-EEEE-
T ss_pred CCCeeEcccC---Cc-ceeEeEEECCCCcEEEEECcc-------cEEEEecCCCccceEEcc
Confidence 6789988651 11 122223333 45555555331 233 45777778998765
No 158
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=31.73 E-value=5.5e+02 Score=25.86 Aligned_cols=153 Identities=15% Similarity=0.117 Sum_probs=84.0
Q ss_pred EEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEEC
Q 008089 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDT 117 (578)
Q Consensus 38 v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~ 117 (578)
+.+++...|++-|+.+ ..+.++|...+..+.++ -+...+.+-+.+.+.++..|.|-.++. +-.||+
T Consensus 107 V~fNeesSVv~SgsfD------~s~r~wDCRS~s~ePiQ---ildea~D~V~Si~v~~heIvaGS~DGt-----vRtydi 172 (307)
T KOG0316|consen 107 VRFNEESSVVASGSFD------SSVRLWDCRSRSFEPIQ---ILDEAKDGVSSIDVAEHEIVAGSVDGT-----VRTYDI 172 (307)
T ss_pred EEecCcceEEEecccc------ceeEEEEcccCCCCccc---hhhhhcCceeEEEecccEEEeeccCCc-----EEEEEe
Confidence 4455555566666643 35788999988877765 345678888888889998888876654 677887
Q ss_pred CCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEE
Q 008089 118 SSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCS 197 (578)
Q Consensus 118 ~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~ 197 (578)
...+-..- .+..|... ....-++...+.|-. ...+..+|-.+.+.-+. .. -....-+---|+
T Consensus 173 R~G~l~sD----y~g~pit~-vs~s~d~nc~La~~l-----------~stlrLlDk~tGklL~s-Yk-Ghkn~eykldc~ 234 (307)
T KOG0316|consen 173 RKGTLSSD----YFGHPITS-VSFSKDGNCSLASSL-----------DSTLRLLDKETGKLLKS-YK-GHKNMEYKLDCC 234 (307)
T ss_pred ecceeehh----hcCCccee-EEecCCCCEEEEeec-----------cceeeecccchhHHHHH-hc-ccccceeeeeee
Confidence 76654321 11111111 111123344444442 23455566555442111 00 111112222344
Q ss_pred EeCCEEEEEecCCCCCcccCceEEEECCCC
Q 008089 198 SWKNKIIVIGGEDGHDYYLSDVHILDTDTL 227 (578)
Q Consensus 198 ~~~~~lyV~GG~~~~~~~~~di~~yD~~t~ 227 (578)
..+..-.||+|...+. ++.||+...
T Consensus 235 l~qsdthV~sgSEDG~-----Vy~wdLvd~ 259 (307)
T KOG0316|consen 235 LNQSDTHVFSGSEDGK-----VYFWDLVDE 259 (307)
T ss_pred ecccceeEEeccCCce-----EEEEEeccc
Confidence 4555567777765443 777887554
No 159
>PRK10115 protease 2; Provisional
Probab=31.23 E-value=9e+02 Score=28.17 Aligned_cols=166 Identities=8% Similarity=-0.037 Sum_probs=80.2
Q ss_pred CCEEEEEcccCCC-CCCCcEEEEECCCCeE--EecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEE
Q 008089 94 GENLYVFGGTDGM-NPLRDLHILDTSSHTW--ISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLY 169 (578)
Q Consensus 94 ~~kIYv~GG~~~~-~~~~~v~~yD~~t~~W--~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~ 169 (578)
+++-+++.-.+.. ....++|++++.+..- ..+-. . +........... +++..++.... ...+.++
T Consensus 182 D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~--e-~~~~~~~~~~~s~d~~~l~i~~~~--------~~~~~~~ 250 (686)
T PRK10115 182 DSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYE--E-KDDTFYVSLHKTTSKHYVVIHLAS--------ATTSEVL 250 (686)
T ss_pred CCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEe--e-CCCCEEEEEEEcCCCCEEEEEEEC--------CccccEE
Confidence 4444444433322 2447899999988732 12211 1 111222223333 34433344421 1235567
Q ss_pred EEEc--CcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECC-CCceEEecCCCCCCCCCceeE
Q 008089 170 ILNT--ETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTD-TLTWKELNTSGMVLSPRAGHS 246 (578)
Q Consensus 170 ~yd~--~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~-t~~W~~v~~~g~~p~~R~~hs 246 (578)
.|+. .+..|..+.. .+ ..........++.+|+.--.+.. ...+...++. ...|+.+... ...+.--.
T Consensus 251 l~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~ly~~tn~~~~---~~~l~~~~~~~~~~~~~l~~~---~~~~~i~~ 320 (686)
T PRK10115 251 LLDAELADAEPFVFLP---RR-KDHEYSLDHYQHRFYLRSNRHGK---NFGLYRTRVRDEQQWEELIPP---RENIMLEG 320 (686)
T ss_pred EEECcCCCCCceEEEE---CC-CCCEEEEEeCCCEEEEEEcCCCC---CceEEEecCCCcccCeEEECC---CCCCEEEE
Confidence 7773 3344433321 11 11222333446788887543222 2336777776 5789888641 11222233
Q ss_pred EEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEE
Q 008089 247 TVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (578)
Q Consensus 247 ~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~ 284 (578)
+...++.|++..-... ...++++|..+.....+.
T Consensus 321 ~~~~~~~l~~~~~~~g----~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 321 FTLFTDWLVVEERQRG----LTSLRQINRKTREVIGIA 354 (686)
T ss_pred EEEECCEEEEEEEeCC----EEEEEEEcCCCCceEEec
Confidence 4455777776654322 345888887766655553
No 160
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=30.82 E-value=5.1e+02 Score=28.95 Aligned_cols=77 Identities=14% Similarity=0.174 Sum_probs=47.1
Q ss_pred CCcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCC
Q 008089 31 KRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNP 108 (578)
Q Consensus 31 ~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~ 108 (578)
.++.-+++++..++..+++||.+. .+++|.+....-.... .....|..-+++.+ ++..+..|- .
T Consensus 442 ~~y~~s~vAv~~~~~~vaVGG~Dg------kvhvysl~g~~l~ee~---~~~~h~a~iT~vaySpd~~yla~~D-----a 507 (603)
T KOG0318|consen 442 IGYESSAVAVSPDGSEVAVGGQDG------KVHVYSLSGDELKEEA---KLLEHRAAITDVAYSPDGAYLAAGD-----A 507 (603)
T ss_pred cccccceEEEcCCCCEEEEecccc------eEEEEEecCCccccee---eeecccCCceEEEECCCCcEEEEec-----c
Confidence 667777888877777889999643 4889988765543311 22334555566665 334444442 2
Q ss_pred CCcEEEEECCCCe
Q 008089 109 LRDLHILDTSSHT 121 (578)
Q Consensus 109 ~~~v~~yD~~t~~ 121 (578)
...+..||..++.
T Consensus 508 ~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 508 SRKVVLYDVASRE 520 (603)
T ss_pred CCcEEEEEcccCc
Confidence 3457778876543
No 161
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=30.80 E-value=16 Score=26.52 Aligned_cols=14 Identities=29% Similarity=0.655 Sum_probs=11.5
Q ss_pred eeeccccCCceEEE
Q 008089 401 AKVTESFPLGYTIE 414 (578)
Q Consensus 401 ~r~~~~~~~~~~~~ 414 (578)
|-+||-||||++-+
T Consensus 18 aDisDyFNYGf~E~ 31 (45)
T PF05182_consen 18 ADISDYFNYGFNEE 31 (45)
T ss_pred CChhhhcCCCCCHH
Confidence 56899999999744
No 162
>PRK10115 protease 2; Provisional
Probab=29.23 E-value=9.6e+02 Score=27.91 Aligned_cols=218 Identities=11% Similarity=0.038 Sum_probs=105.0
Q ss_pred eEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcE--EEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCCc
Q 008089 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTW--SQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRD 111 (578)
Q Consensus 35 hs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W--~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~ 111 (578)
...+...+++.||+. -.........++|++++.+..- ..+- . . +........... +++..++..... ..+.
T Consensus 175 ~~~~w~~D~~~~~y~-~~~~~~~~~~~v~~h~lgt~~~~d~lv~-~-e-~~~~~~~~~~~s~d~~~l~i~~~~~--~~~~ 248 (686)
T PRK10115 175 PSFVWANDSWTFYYV-RKHPVTLLPYQVWRHTIGTPASQDELVY-E-E-KDDTFYVSLHKTTSKHYVVIHLASA--TTSE 248 (686)
T ss_pred eEEEEeeCCCEEEEE-EecCCCCCCCEEEEEECCCChhHCeEEE-e-e-CCCCEEEEEEEcCCCCEEEEEEECC--cccc
Confidence 334444456555443 3332212447899999988732 2221 1 1 111222222333 444333433322 3357
Q ss_pred EEEEEC--CCCeEE-ecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcC-cceEEEeccCCCC
Q 008089 112 LHILDT--SSHTWI-SPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTE-TFVWKRATTSGNP 187 (578)
Q Consensus 112 v~~yD~--~t~~W~-~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~-t~~W~~~~~~g~~ 187 (578)
++.|+. .+..|. .+.. .... .......++.+|+.--.+ .....+...++. ...|+.+-...
T Consensus 249 ~~l~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~ly~~tn~~--------~~~~~l~~~~~~~~~~~~~l~~~~-- 313 (686)
T PRK10115 249 VLLLDAELADAEPFVFLPR---RKDH--EYSLDHYQHRFYLRSNRH--------GKNFGLYRTRVRDEQQWEELIPPR-- 313 (686)
T ss_pred EEEEECcCCCCCceEEEEC---CCCC--EEEEEeCCCEEEEEEcCC--------CCCceEEEecCCCcccCeEEECCC--
Confidence 888884 334443 2221 1111 122233457788864321 112336666766 57898875321
Q ss_pred CCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEE---eC-CE-EEEEcCccC
Q 008089 188 PSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA---FG-KN-LFVFGGFTD 262 (578)
Q Consensus 188 p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~---~~-~~-iyV~GG~~~ 262 (578)
..+.--.+...++.|++..=.++ ...++++|..+.....+.. +.+........ .+ +. ++.+.+..
T Consensus 314 -~~~~i~~~~~~~~~l~~~~~~~g----~~~l~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~ss~~- 383 (686)
T PRK10115 314 -ENIMLEGFTLFTDWLVVEERQRG----LTSLRQINRKTREVIGIAF----DDPAYVTWIAYNPEPETSRLRYGYSSMT- 383 (686)
T ss_pred -CCCEEEEEEEECCEEEEEEEeCC----EEEEEEEcCCCCceEEecC----CCCceEeeecccCCCCCceEEEEEecCC-
Confidence 11222234445777777653332 2448888876665555431 22222211111 11 22 33333333
Q ss_pred CCCccCcEEEEECCCCcEEEEEeC
Q 008089 263 SQNLYDDLYMIDVDSGLWTKVITT 286 (578)
Q Consensus 263 ~~~~~~dv~~ydi~t~~W~~l~~~ 286 (578)
.-.++|.||+.+.+|+.+...
T Consensus 384 ---~P~~~y~~d~~~~~~~~l~~~ 404 (686)
T PRK10115 384 ---TPDTLFELDMDTGERRVLKQT 404 (686)
T ss_pred ---CCCEEEEEECCCCcEEEEEec
Confidence 246799999999999888754
No 163
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=29.09 E-value=1.2e+03 Score=28.85 Aligned_cols=210 Identities=15% Similarity=0.108 Sum_probs=105.2
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCC-------CCCCC--cceeEEEE--CCEEEEEcccCCCCCCCc
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGS-------PPTPR--DSHSCTTV--GENLYVFGGTDGMNPLRD 111 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~-------~P~~R--~~hs~~~~--~~kIYv~GG~~~~~~~~~ 111 (578)
++.|||.-- ..+.+.++|.....-..+...+. ....+ .-+++++. ++.|||.-..+ +.
T Consensus 579 ~g~lyVaDs------~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n-----~~ 647 (1057)
T PLN02919 579 NNRLFISDS------NHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN-----HA 647 (1057)
T ss_pred CCeEEEEEC------CCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC-----ce
Confidence 456887632 23568899986543222221111 01111 12444443 45688875322 46
Q ss_pred EEEEECCCCeEEecccCCCCC------------CCCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcce
Q 008089 112 LHILDTSSHTWISPSVRGEGP------------EAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV 177 (578)
Q Consensus 112 v~~yD~~t~~W~~l~~~g~~P------------~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~ 177 (578)
+.++|+.++.-+.+...|... .-..-+.+++. ++.+||.... .+.+++||+.+..
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----------~~~I~v~d~~~g~ 716 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----------QHQIWEYNISDGV 716 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----------CCeEEEEECCCCe
Confidence 888998877655443211100 00111234443 4678887541 3568888887766
Q ss_pred EEEeccCCCC-------CC---CCCceeEEEe--CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCC--C----
Q 008089 178 WKRATTSGNP-------PS---ARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMV--L---- 239 (578)
Q Consensus 178 W~~~~~~g~~-------p~---~R~~h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~--p---- 239 (578)
...+...+.. +. -..-+.+++. ++.|||....+ +.|.+||+.+.....+.. +.. +
T Consensus 717 v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n------~~Irv~D~~tg~~~~~~g-g~~~~~~~l~ 789 (1057)
T PLN02919 717 TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES------SSIRALDLKTGGSRLLAG-GDPTFSDNLF 789 (1057)
T ss_pred EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC------CeEEEEECCCCcEEEEEe-cccccCcccc
Confidence 5544322110 00 0111223332 34688875432 568999988765433221 000 0
Q ss_pred ----------CCCce--eEEE-EeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCC
Q 008089 240 ----------SPRAG--HSTV-AFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTG 287 (578)
Q Consensus 240 ----------~~R~~--hs~v-~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~ 287 (578)
..+.. .+++ .-++.+||....+ +.|.+||+.++....+...+
T Consensus 790 ~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N------~rIrviD~~tg~v~tiaG~G 844 (1057)
T PLN02919 790 KFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN------HKIKKLDPATKRVTTLAGTG 844 (1057)
T ss_pred cccCCCCchhhhhccCCceeeEeCCCcEEEEECCC------CEEEEEECCCCeEEEEeccC
Confidence 00000 1222 2345788876543 45999999998887766443
No 164
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=28.19 E-value=6.4e+02 Score=25.52 Aligned_cols=126 Identities=21% Similarity=0.178 Sum_probs=68.8
Q ss_pred CCCCCcccEEEE-ECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeC-CEEEEEec
Q 008089 131 GPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWK-NKIIVIGG 208 (578)
Q Consensus 131 ~P~~R~~hs~~~-~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~-~~lyV~GG 208 (578)
.+.|-.+.-... -.+.|++.|| -..+|..|+++.+.+..- ..-.-|-|+.+.-+ +-=++.|+
T Consensus 112 ~evPeINam~ldP~enSi~~AgG------------D~~~y~~dlE~G~i~r~~----rGHtDYvH~vv~R~~~~qilsG~ 175 (325)
T KOG0649|consen 112 VEVPEINAMWLDPSENSILFAGG------------DGVIYQVDLEDGRIQREY----RGHTDYVHSVVGRNANGQILSGA 175 (325)
T ss_pred ccCCccceeEeccCCCcEEEecC------------CeEEEEEEecCCEEEEEE----cCCcceeeeeeecccCcceeecC
Confidence 344444433332 2478999998 356788899998887652 12233556665532 33445566
Q ss_pred CCCCCcccCceEEEECCCCceEEe-cCCCCCCCCC--cee--EEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEE
Q 008089 209 EDGHDYYLSDVHILDTDTLTWKEL-NTSGMVLSPR--AGH--STVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (578)
Q Consensus 209 ~~~~~~~~~di~~yD~~t~~W~~v-~~~g~~p~~R--~~h--s~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l 283 (578)
.++. +-++|+++.+-.++ .....+..-| .+- .+...+..-+|.||.- .+-.|++.+.+=+.+
T Consensus 176 EDGt------vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp-------~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 176 EDGT------VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP-------KLSLWHLRSSESTCV 242 (325)
T ss_pred CCcc------EEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC-------ceeEEeccCCCceEE
Confidence 5543 67788887765443 2221122222 222 4445555566777652 255667666655554
Q ss_pred Ee
Q 008089 284 IT 285 (578)
Q Consensus 284 ~~ 285 (578)
-+
T Consensus 243 fp 244 (325)
T KOG0649|consen 243 FP 244 (325)
T ss_pred Ee
Confidence 33
No 165
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=26.84 E-value=8.8e+02 Score=26.64 Aligned_cols=203 Identities=10% Similarity=0.063 Sum_probs=0.0
Q ss_pred eEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE----CCEEEEEcccCCCCCCC
Q 008089 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV----GENLYVFGGTDGMNPLR 110 (578)
Q Consensus 35 hs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~----~~kIYv~GG~~~~~~~~ 110 (578)
|+.+..+.| .|++||.-..+ +|++...++.--. -..+.+.+.+.+ ++..++-||.++.
T Consensus 85 ~al~s~n~G--~~l~ag~i~g~-----lYlWelssG~LL~-------v~~aHYQ~ITcL~fs~dgs~iiTgskDg~---- 146 (476)
T KOG0646|consen 85 HALASSNLG--YFLLAGTISGN-----LYLWELSSGILLN-------VLSAHYQSITCLKFSDDGSHIITGSKDGA---- 146 (476)
T ss_pred eeeecCCCc--eEEEeecccCc-----EEEEEeccccHHH-------HHHhhccceeEEEEeCCCcEEEecCCCcc----
Q ss_pred cEEEEECCCCeEEecccCCCCCCCCcccEEEEE---------CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEe
Q 008089 111 DLHILDTSSHTWISPSVRGEGPEAREGHSAALV---------GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRA 181 (578)
Q Consensus 111 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~---------~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~ 181 (578)
+.+|.+.+--=..-.-...+..--..|++.+. +.++|-.+= -..+-+||+....--.-
T Consensus 147 -V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~------------D~t~k~wdlS~g~LLlt 213 (476)
T KOG0646|consen 147 -VLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE------------DRTIKLWDLSLGVLLLT 213 (476)
T ss_pred -EEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC------------CceEEEEEeccceeeEE
Q ss_pred ccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCC----------ceEEecCCCCCCCCCceeEEEEeC
Q 008089 182 TTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTL----------TWKELNTSGMVLSPRAGHSTVAFG 251 (578)
Q Consensus 182 ~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~----------~W~~v~~~g~~p~~R~~hs~v~~~ 251 (578)
. ..++.-+++++--..-.+|-|...+..+...++.+-.... .=......|.....-...-++..+
T Consensus 214 i-----~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D 288 (476)
T KOG0646|consen 214 I-----TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD 288 (476)
T ss_pred E-----ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC
Q ss_pred CEEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 252 KNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 252 ~~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
+.+++.|+.++. +.+||+.+..
T Consensus 289 gtlLlSGd~dg~------VcvWdi~S~Q 310 (476)
T KOG0646|consen 289 GTLLLSGDEDGK------VCVWDIYSKQ 310 (476)
T ss_pred ccEEEeeCCCCC------EEEEecchHH
No 166
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.81 E-value=5.6e+02 Score=27.71 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=17.4
Q ss_pred EEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcc
Q 008089 139 SAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF 176 (578)
Q Consensus 139 s~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~ 176 (578)
+++.. ++.=||++|.. ...+++||....
T Consensus 240 SC~wDlde~h~IYaGl~----------nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 240 SCCWDLDERHVIYAGLQ----------NGMVLVYDMRQP 268 (463)
T ss_pred eeeeccCCcceeEEecc----------CceEEEEEccCC
Confidence 44443 45678888832 345788987643
No 167
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=26.55 E-value=8e+02 Score=26.07 Aligned_cols=116 Identities=14% Similarity=0.026 Sum_probs=61.2
Q ss_pred EEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEE-ECCEEEEEcccCC----CCCCCcEEEEECCC
Q 008089 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDG----MNPLRDLHILDTSS 119 (578)
Q Consensus 45 ~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~kIYv~GG~~~----~~~~~~v~~yD~~t 119 (578)
.+||.-..... ..+.++++|..+.+-.. .++.....|.... -+..||+.-.+-. ....+.+.+||+.+
T Consensus 14 ~v~V~d~~~~~--~~~~v~ViD~~~~~v~g-----~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t 86 (352)
T TIGR02658 14 RVYVLDPGHFA--ATTQVYTIDGEAGRVLG-----MTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT 86 (352)
T ss_pred EEEEECCcccc--cCceEEEEECCCCEEEE-----EEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECcc
Confidence 45555443211 23779999998866443 2233222233322 3557999876311 12347799999999
Q ss_pred CeEEe-cccCCCCCCCC-----cccEEEE--ECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEE
Q 008089 120 HTWIS-PSVRGEGPEAR-----EGHSAAL--VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR 180 (578)
Q Consensus 120 ~~W~~-l~~~g~~P~~R-----~~hs~~~--~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~ 180 (578)
.+-.. ++. .+.|| .-+..++ .+..|||.-= ...+.+-++|+.+.+-..
T Consensus 87 ~~~~~~i~~---p~~p~~~~~~~~~~~~ls~dgk~l~V~n~----------~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 87 HLPIADIEL---PEGPRFLVGTYPWMTSLTPDNKTLLFYQF----------SPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CcEEeEEcc---CCCchhhccCccceEEECCCCCEEEEecC----------CCCCEEEEEECCCCcEEE
Confidence 87643 331 12333 1112222 2346777521 124567777877765543
No 168
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.44 E-value=4.5e+02 Score=26.60 Aligned_cols=121 Identities=20% Similarity=0.257 Sum_probs=66.1
Q ss_pred CCCCCCcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEee-------------ecCCCCCCCcceeEEEE
Q 008089 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPV-------------IKGSPPTPRDSHSCTTV 93 (578)
Q Consensus 27 ~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~-------------~~g~~P~~R~~hs~~~~ 93 (578)
..|.+...|..+.- -+=++-||++.. -.+|.||-. +|..-. -.+..-.++...+.+.-
T Consensus 161 ~~~g~~~~~~~~~~---~krlvSgGcDn~----VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 161 SAPGSLVDQGPAAK---VKRLVSGGCDNL----VKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred CCCccccccCcccc---cceeeccCCccc----eeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 34445555554432 134688887542 246666643 554211 11122344555555555
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEc
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~ 173 (578)
+++++|+- -+.....|+..-. -+.|.+.+..+-...++-|-|-|| .|.+.++-.
T Consensus 232 Dg~viIwt-------------~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn~LaVs~G------------dNkvtlwke 285 (299)
T KOG1332|consen 232 DGTVIIWT-------------KDEEYEPWKKTLL-EEFPDVVWRVSWSLSGNILAVSGG------------DNKVTLWKE 285 (299)
T ss_pred CCcEEEEE-------------ecCccCccccccc-ccCCcceEEEEEeccccEEEEecC------------CcEEEEEEe
Confidence 66666552 3334567864222 246666666666666777778788 355666655
Q ss_pred Cc-ceEEEec
Q 008089 174 ET-FVWKRAT 182 (578)
Q Consensus 174 ~t-~~W~~~~ 182 (578)
.. .+|+++.
T Consensus 286 ~~~Gkw~~v~ 295 (299)
T KOG1332|consen 286 NVDGKWEEVG 295 (299)
T ss_pred CCCCcEEEcc
Confidence 54 4898875
No 169
>TIGR01624 LRP1_Cterm LRP1 C-terminal domain. This model represents a tightly conserved small domain found in LRP1 and related plant proteins. This family also contains a well-conserved putative zinc finger domain (TIGR01623). The rest of the sequence of most members consists of highly divergent, low-complexity sequence.
Probab=26.10 E-value=75 Score=23.41 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=19.1
Q ss_pred CCceEEEEeEcCceeeeeeeecC
Q 008089 408 PLGYTIETTIDGKPLRGILFANK 430 (578)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~l~~~~ 430 (578)
-|.|--...|.|.+|+|+|.-.-
T Consensus 27 e~aYQt~V~IgGHvFkGiLyDqG 49 (50)
T TIGR01624 27 EYAYQATVTIGGHVFKGFLHDQG 49 (50)
T ss_pred eEEEEEEEEECceEEeeEEeccC
Confidence 37788888999999999997543
No 170
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=25.46 E-value=7.8e+02 Score=25.60 Aligned_cols=130 Identities=16% Similarity=0.183 Sum_probs=66.6
Q ss_pred cEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEE
Q 008089 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSA 140 (578)
Q Consensus 61 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~ 140 (578)
.+.+||...+.-+.. .-..-.--.|+..+..-.++||.++ .+-+||+.+..=..+-... .+. .++
T Consensus 36 slrlYdv~~~~l~~~-----~~~~~plL~c~F~d~~~~~~G~~dg-----~vr~~Dln~~~~~~igth~---~~i--~ci 100 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLK-----FKHGAPLLDCAFADESTIVTGGLDG-----QVRRYDLNTGNEDQIGTHD---EGI--RCI 100 (323)
T ss_pred cEEEEeccchhhhhh-----eecCCceeeeeccCCceEEEeccCc-----eEEEEEecCCcceeeccCC---Cce--EEE
Confidence 478899887743321 1111112345555666667788765 4888999887654443211 111 011
Q ss_pred EE-ECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCce
Q 008089 141 AL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDV 219 (578)
Q Consensus 141 ~~-~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di 219 (578)
.. .....+|-|||+ ..+-.+|+.... ... ..-.+..-+++.+.++.|+| |+.+ ..+
T Consensus 101 ~~~~~~~~vIsgsWD-----------~~ik~wD~R~~~---~~~--~~d~~kkVy~~~v~g~~LvV-g~~~------r~v 157 (323)
T KOG1036|consen 101 EYSYEVGCVISGSWD-----------KTIKFWDPRNKV---VVG--TFDQGKKVYCMDVSGNRLVV-GTSD------RKV 157 (323)
T ss_pred EeeccCCeEEEcccC-----------ccEEEEeccccc---ccc--ccccCceEEEEeccCCEEEE-eecC------ceE
Confidence 11 234577888874 335555665411 111 11122244555555565555 4433 347
Q ss_pred EEEECCCCc
Q 008089 220 HILDTDTLT 228 (578)
Q Consensus 220 ~~yD~~t~~ 228 (578)
.+||+.+..
T Consensus 158 ~iyDLRn~~ 166 (323)
T KOG1036|consen 158 LIYDLRNLD 166 (323)
T ss_pred EEEEccccc
Confidence 888886543
No 171
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=24.63 E-value=1.5e+02 Score=20.14 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=16.2
Q ss_pred eeEEEECCEEEEEcccCCCCCCCcEEEEECCC
Q 008089 88 HSCTTVGENLYVFGGTDGMNPLRDLHILDTSS 119 (578)
Q Consensus 88 hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t 119 (578)
.+.++.++++|+.+. -..+++||..|
T Consensus 15 ~~~~v~~g~vyv~~~------dg~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTG------DGNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-T------TSEEEEEETT-
T ss_pred cCCEEECCEEEEEcC------CCEEEEEeCCC
Confidence 344666888888765 24699998764
No 172
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=22.57 E-value=1e+03 Score=25.93 Aligned_cols=106 Identities=18% Similarity=0.154 Sum_probs=57.5
Q ss_pred CcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCC
Q 008089 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 189 (578)
Q Consensus 110 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~ 189 (578)
.++|.+|+.+.+-.++. .. .....+-.-.-+++-++|.- ...-...++++|++...=+.+...+
T Consensus 262 ~~iy~~dl~~~~~~~Lt---~~-~gi~~~Ps~spdG~~ivf~S--------dr~G~p~I~~~~~~g~~~~riT~~~---- 325 (425)
T COG0823 262 PDIYLMDLDGKNLPRLT---NG-FGINTSPSWSPDGSKIVFTS--------DRGGRPQIYLYDLEGSQVTRLTFSG---- 325 (425)
T ss_pred ccEEEEcCCCCcceecc---cC-CccccCccCCCCCCEEEEEe--------CCCCCcceEEECCCCCceeEeeccC----
Confidence 57999999877633322 11 12222333333444444421 0111348999999988777775322
Q ss_pred CCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCc-eEEecC
Q 008089 190 ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT-WKELNT 234 (578)
Q Consensus 190 ~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~-W~~v~~ 234 (578)
....+.....+++.++|-+...+. -++..+|+.+.. |+.+..
T Consensus 326 ~~~~~p~~SpdG~~i~~~~~~~g~---~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 326 GGNSNPVWSPDGDKIVFESSSGGQ---WDIDKNDLASGGKIRILTS 368 (425)
T ss_pred CCCcCccCCCCCCEEEEEeccCCc---eeeEEeccCCCCcEEEccc
Confidence 122233334456655555443221 568888887766 888765
No 173
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=22.32 E-value=7.5e+02 Score=24.29 Aligned_cols=215 Identities=14% Similarity=0.184 Sum_probs=95.0
Q ss_pred CCCCcceEEEEEcCCCEEEEEc--CCCCC-CCCcccEEEEEcC-CCcEEEeeecC-C----CCCCCcceeEEEECCEEEE
Q 008089 29 PGKRWGHTCNAIKGGRFLYVFG--GYGKD-NCQTNQVHVFDTV-NQTWSQPVIKG-S----PPTPRDSHSCTTVGENLYV 99 (578)
Q Consensus 29 P~~R~ghs~v~v~~g~~Iyv~G--G~~~~-~~~~~~v~~yD~~-t~~W~~l~~~g-~----~P~~R~~hs~~~~~~kIYv 99 (578)
+..+.+..++++..++.|++|- +.... .....-.+..... -.+|..+.... . .+.+-.+.....-++++++
T Consensus 44 ~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~ 123 (275)
T PF13088_consen 44 PGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIA 123 (275)
T ss_dssp TTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEE
T ss_pred cCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEE
Confidence 3456666666654355677775 22111 1111112355555 45899864211 1 1111222223444778777
Q ss_pred EcccCC-CCCCCcEEEEECCC-CeEEecccCCCCCCCCcccEEEE-E-CCEEEEEccCCCCCCCCCceeeceEEEEEcC-
Q 008089 100 FGGTDG-MNPLRDLHILDTSS-HTWISPSVRGEGPEAREGHSAAL-V-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTE- 174 (578)
Q Consensus 100 ~GG~~~-~~~~~~v~~yD~~t-~~W~~l~~~g~~P~~R~~hs~~~-~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~- 174 (578)
. .+.. .........+.... .+|+...... ........+.+ . +++|+++--.. . .. .-.+.+..+
T Consensus 124 ~-~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~----~~---~~~~~~S~D~ 192 (275)
T PF13088_consen 124 P-YYHESGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-G----ND---DIYISRSTDG 192 (275)
T ss_dssp E-EEEESSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-S----ST---EEEEEEESST
T ss_pred E-EeeccccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-C----CC---cEEEEEECCC
Confidence 6 2111 11223344455544 4697765321 22122333332 3 56888775421 0 01 222333333
Q ss_pred cceEEEeccCCCCCCCCCceeEEEe-CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeE-EEEe-C
Q 008089 175 TFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHS-TVAF-G 251 (578)
Q Consensus 175 t~~W~~~~~~g~~p~~R~~h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs-~v~~-~ 251 (578)
-.+|..+... ..|.......++.. ++.++++....... ..-.+++-.-...+|..+.....-+....+++ ++.. +
T Consensus 193 G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r-~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~d 270 (275)
T PF13088_consen 193 GRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGR-SNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPD 270 (275)
T ss_dssp TSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTS-EEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEET
T ss_pred CCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCC-CceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCC
Confidence 4689886532 33444444444443 56877777622221 11123333334788987654111122234444 4444 4
Q ss_pred CEEEE
Q 008089 252 KNLFV 256 (578)
Q Consensus 252 ~~iyV 256 (578)
++|+|
T Consensus 271 g~l~i 275 (275)
T PF13088_consen 271 GKLYI 275 (275)
T ss_dssp TEEEE
T ss_pred CcCCC
Confidence 57775
No 174
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=22.31 E-value=7.2e+02 Score=24.06 Aligned_cols=71 Identities=21% Similarity=0.165 Sum_probs=40.8
Q ss_pred ceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEE--eCCEEEE-EecCCCCCcccCceEEEECCCCceEEecC
Q 008089 162 EVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS--WKNKIIV-IGGEDGHDYYLSDVHILDTDTLTWKELNT 234 (578)
Q Consensus 162 ~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~--~~~~lyV-~GG~~~~~~~~~di~~yD~~t~~W~~v~~ 234 (578)
..-..++|++|..++.|..+..... ...+..--+. -+..|.| +|...+.-.--..+++|++.++.-..+-.
T Consensus 84 eEgiGkIYIkn~~~~~~~~L~i~~~--~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 84 EEGIGKIYIKNLNNNNWWSLQIDQN--EEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred cccceeEEEEecCCCceEEEEecCc--ccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeee
Confidence 3446789999998888876643211 1122222222 2455544 44322221123469999999998888765
No 175
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=21.30 E-value=1.1e+03 Score=25.86 Aligned_cols=197 Identities=13% Similarity=0.102 Sum_probs=0.0
Q ss_pred EcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccC
Q 008089 49 FGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVR 128 (578)
Q Consensus 49 ~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~ 128 (578)
+|-|.....+.+++|++|-.-+.=-++. -+-..-.=+++-.+++.+|++- ....+-+++.|+.+-+=-++-
T Consensus 395 ~~dW~~~de~~N~vYilDe~lnvvGklt---Gl~~gERIYAvRf~gdv~yiVT----frqtDPlfviDlsNPenPkvl-- 465 (603)
T COG4880 395 LSDWTSEDEPVNAVYILDENLNVVGKLT---GLAPGERIYAVRFVGDVLYIVT----FRQTDPLFVIDLSNPENPKVL-- 465 (603)
T ss_pred ecccccCCCccceeEEEcCCCcEEEEEe---ccCCCceEEEEEEeCceEEEEE----EeccCceEEEEcCCCCCCcee--
Q ss_pred CCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCc----ceEEEeccCCCCCCCCCceeEEEeCCE--
Q 008089 129 GEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET----FVWKRATTSGNPPSARDSHTCSSWKNK-- 202 (578)
Q Consensus 129 g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t----~~W~~~~~~g~~p~~R~~h~~~~~~~~-- 202 (578)
|.+-.|-+..=.--++...++==| ..+-.-.+-.||... ++-.+.....-..+.-+.|-+..++.+
T Consensus 466 GeLKIPGfS~YLHpigen~~lGvG--------~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ 537 (603)
T COG4880 466 GELKIPGFSEYLHPIGENRLLGVG--------AYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAE 537 (603)
T ss_pred EEEecCCchhhccccCCCcEEEee--------cccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCccc
Q ss_pred EEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEE
Q 008089 203 IIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (578)
Q Consensus 203 lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~ 282 (578)
|+.+ .....-++|-.+.+.=-.....-..+.-| +..++|.+|++||.. +|+|| .+.|+.
T Consensus 538 ifFl-------Pay~~gyif~iedg~kl~k~~e~k~na~R----A~fi~dylY~vg~~e--------v~~ld--enswe~ 596 (603)
T COG4880 538 IFFL-------PAYLGGYIFFIEDGSKLRKRAERKLNADR----AFFIKDYLYLVGGNE--------VWKLD--ENSWEV 596 (603)
T ss_pred EEEe-------cccCccEEEEEecCceeeehhhhccccee----eEEecceEEEeccce--------eEEec--cchHhh
Q ss_pred E
Q 008089 283 V 283 (578)
Q Consensus 283 l 283 (578)
+
T Consensus 597 V 597 (603)
T COG4880 597 V 597 (603)
T ss_pred h
No 176
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.77 E-value=9.3e+02 Score=25.90 Aligned_cols=145 Identities=18% Similarity=0.211 Sum_probs=65.5
Q ss_pred EEEEEccCCCCCCCCCceeeceEEEEEcCc--ceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCC----CCcccCce
Q 008089 146 RLFIFGGCGKSSNTNDEVYYNDLYILNTET--FVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDG----HDYYLSDV 219 (578)
Q Consensus 146 ~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t--~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~----~~~~~~di 219 (578)
.|+.+||-.. .+.+.++|+.. ..|+.- +.|.-+-..-.-++.-.+-+.-|... ....+..+
T Consensus 162 ~Iva~GGke~---------~n~lkiwdle~~~qiw~aK----NvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv 228 (412)
T KOG3881|consen 162 YIVATGGKEN---------INELKIWDLEQSKQIWSAK----NVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV 228 (412)
T ss_pred ceEecCchhc---------ccceeeeecccceeeeecc----CCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence 5888899421 34555666554 456543 33333333333333322222222110 01134568
Q ss_pred EEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEe
Q 008089 220 HILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGD 299 (578)
Q Consensus 220 ~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~ 299 (578)
-.||+.... +.+......-.+....+. .-.++.+++|-. ..++..||+..+.--...-.+---..|+-|+
T Consensus 229 R~YDt~~qR-RPV~~fd~~E~~is~~~l-~p~gn~Iy~gn~------~g~l~~FD~r~~kl~g~~~kg~tGsirsih~-- 298 (412)
T KOG3881|consen 229 RLYDTRHQR-RPVAQFDFLENPISSTGL-TPSGNFIYTGNT------KGQLAKFDLRGGKLLGCGLKGITGSIRSIHC-- 298 (412)
T ss_pred EEecCcccC-cceeEeccccCcceeeee-cCCCcEEEEecc------cchhheecccCceeeccccCCccCCcceEEE--
Confidence 889987543 222221111122221111 223444444433 3458889998876443322222122232222
Q ss_pred eeeccCCCEEEEEccccC
Q 008089 300 CLDPLKGGVLVFIGGCNK 317 (578)
Q Consensus 300 ~~~~~~~~~l~v~GG~~~ 317 (578)
..+..++..+|.+.
T Consensus 299 ----hp~~~~las~GLDR 312 (412)
T KOG3881|consen 299 ----HPTHPVLASCGLDR 312 (412)
T ss_pred ----cCCCceEEeeccce
Confidence 23556777777754
No 177
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=20.40 E-value=9.5e+02 Score=24.75 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=33.4
Q ss_pred eEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccC
Q 008089 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGC 153 (578)
Q Consensus 89 s~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~ 153 (578)
..+..++.+...||.++. +..+|+...+- +. .+...-.-+++|+..++.++.-+.
T Consensus 198 ~~vSpDGslcasGgkdg~-----~~LwdL~~~k~--ly---sl~a~~~v~sl~fspnrywL~~at 252 (315)
T KOG0279|consen 198 VTVSPDGSLCASGGKDGE-----AMLWDLNEGKN--LY---SLEAFDIVNSLCFSPNRYWLCAAT 252 (315)
T ss_pred EEECCCCCEEecCCCCce-----EEEEEccCCce--eE---eccCCCeEeeEEecCCceeEeecc
Confidence 334458899999998764 55556554432 11 122233356777778888887663
No 178
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=20.32 E-value=8e+02 Score=26.07 Aligned_cols=105 Identities=16% Similarity=0.297 Sum_probs=61.7
Q ss_pred EEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECC
Q 008089 197 SSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVD 276 (578)
Q Consensus 197 ~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~ 276 (578)
+-++++.+|.-..+ ..+-++++.+..+... +...+.|-++..+.++++|-|..+ +.|..||++
T Consensus 326 Vdfd~kyIVsASgD------RTikvW~~st~efvRt-----l~gHkRGIAClQYr~rlvVSGSSD------ntIRlwdi~ 388 (499)
T KOG0281|consen 326 VDFDDKYIVSASGD------RTIKVWSTSTCEFVRT-----LNGHKRGIACLQYRDRLVVSGSSD------NTIRLWDIE 388 (499)
T ss_pred eccccceEEEecCC------ceEEEEeccceeeehh-----hhcccccceehhccCeEEEecCCC------ceEEEEecc
Confidence 34577744432211 2366778777665543 445567778889999998887653 358899999
Q ss_pred CCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEecc
Q 008089 277 SGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 331 (578)
Q Consensus 277 t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~~~ 331 (578)
.+.--++-. |.....|.- --+++=+|.||+++.. .+|-|.+.
T Consensus 389 ~G~cLRvLe-GHEeLvRci--------RFd~krIVSGaYDGki----kvWdl~aa 430 (499)
T KOG0281|consen 389 CGACLRVLE-GHEELVRCI--------RFDNKRIVSGAYDGKI----KVWDLQAA 430 (499)
T ss_pred ccHHHHHHh-chHHhhhhe--------eecCceeeeccccceE----EEEecccc
Confidence 876443321 111111111 1255677889998753 45655544
No 179
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=20.06 E-value=8.6e+02 Score=26.00 Aligned_cols=197 Identities=16% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 200 ~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
.|..|+.|..+.. +-++|+++++-..--+ |....-| .+++..-.=|+|....+.. |-+||++.++
T Consensus 162 ~n~wf~tgs~Drt------ikIwDlatg~Lkltlt-Ghi~~vr---~vavS~rHpYlFs~gedk~-----VKCwDLe~nk 226 (460)
T KOG0285|consen 162 GNEWFATGSADRT------IKIWDLATGQLKLTLT-GHIETVR---GVAVSKRHPYLFSAGEDKQ-----VKCWDLEYNK 226 (460)
T ss_pred CceeEEecCCCce------eEEEEcccCeEEEeec-chhheee---eeeecccCceEEEecCCCe-----eEEEechhhh
Q ss_pred EEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEecccccceec-ccchhhHhhHhhhhccccCC
Q 008089 280 WTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKL-EKLSLRKQLKLKCQEQNFTP 358 (578)
Q Consensus 280 W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~~~~~~~~~l-~~ls~~k~lk~~~~~~~~~p 358 (578)
..+ --..-..+.-|+.....-.+++-||.+..- .+|-+.+...-..-. ...............+-.+.
T Consensus 227 vIR-------~YhGHlS~V~~L~lhPTldvl~t~grDst~----RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 227 VIR-------HYHGHLSGVYCLDLHPTLDVLVTGGRDSTI----RVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred hHH-------HhccccceeEEEeccccceeEEecCCcceE----EEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Q ss_pred ccccceEEecccCCCCCCCCccccCCCCCCCccCC------------------cccceeeeeeccccCCceEEEEeEcCc
Q 008089 359 VHDRALVRIDTISDVHQPTPLLSYGEPRRNNFPLN------------------EGKKTFQAKVTESFPLGYTIETTIDGK 420 (578)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~------------------~g~~~f~~r~~~~~~~~~~~~~~~~~~ 420 (578)
..|..++-|+...++.-. ++.+--.+.+-.-+| +-++.|-+.+|.----+-||+..=||-
T Consensus 296 S~D~tvrlWDl~agkt~~--tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v 373 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAGKTMI--TLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGV 373 (460)
T ss_pred cCCceEEEeeeccCceeE--eeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCce
Q ss_pred eeee
Q 008089 421 PLRG 424 (578)
Q Consensus 421 ~~~~ 424 (578)
+|.|
T Consensus 374 ~~~G 377 (460)
T KOG0285|consen 374 LVSG 377 (460)
T ss_pred EEEc
Done!