Query 008089
Match_columns 578
No_of_seqs 337 out of 2543
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 17:52:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zgk_A Kelch-like ECH-associat 100.0 4.2E-42 1.5E-46 353.1 33.0 283 26-340 9-295 (308)
2 2xn4_A Kelch-like protein 2; s 100.0 4.7E-40 1.6E-44 336.2 36.9 268 43-339 15-283 (302)
3 3ii7_A Kelch-like protein 7; p 100.0 8E-40 2.7E-44 335.1 35.1 267 44-341 12-281 (306)
4 2vpj_A Kelch-like protein 12; 100.0 1.5E-39 5.1E-44 332.0 34.6 271 43-341 14-287 (301)
5 2uvk_A YJHT; unknown function, 100.0 6.8E-40 2.3E-44 342.9 32.0 291 27-340 5-350 (357)
6 2xn4_A Kelch-like protein 2; s 100.0 4E-39 1.4E-43 329.3 34.3 253 26-301 46-298 (302)
7 3ii7_A Kelch-like protein 7; p 100.0 4.8E-39 1.6E-43 329.3 34.7 252 27-301 41-293 (306)
8 1zgk_A Kelch-like ECH-associat 100.0 3.6E-39 1.2E-43 331.3 33.5 250 26-300 55-307 (308)
9 2vpj_A Kelch-like protein 12; 100.0 1.8E-38 6.3E-43 323.9 33.9 249 27-301 48-299 (301)
10 4asc_A Kelch repeat and BTB do 100.0 3.1E-39 1.1E-43 332.6 25.0 259 27-314 31-305 (315)
11 2woz_A Kelch repeat and BTB do 100.0 1.2E-38 4E-43 328.7 26.1 258 27-313 42-314 (318)
12 4asc_A Kelch repeat and BTB do 100.0 3.6E-38 1.2E-42 324.6 28.3 265 44-338 5-283 (315)
13 2woz_A Kelch repeat and BTB do 100.0 1.7E-37 5.7E-42 320.1 31.4 273 30-338 7-293 (318)
14 2zwa_A Leucine carboxyl methyl 100.0 9.9E-37 3.4E-41 347.7 29.1 283 27-331 384-693 (695)
15 2uvk_A YJHT; unknown function, 100.0 3.8E-35 1.3E-39 306.8 26.3 244 27-286 50-351 (357)
16 2zwa_A Leucine carboxyl methyl 100.0 2.1E-30 7.1E-35 295.6 28.2 240 79-337 383-640 (695)
17 1k3i_A Galactose oxidase precu 100.0 7.9E-30 2.7E-34 288.9 23.8 267 29-316 183-531 (656)
18 1k3i_A Galactose oxidase precu 99.9 4.2E-25 1.4E-29 250.1 23.9 222 28-262 237-532 (656)
19 3mbr_X Glutamine cyclotransfer 97.9 0.0041 1.4E-07 61.0 24.6 203 85-329 21-232 (243)
20 3dsm_A Uncharacterized protein 97.8 0.0076 2.6E-07 61.1 25.7 248 32-331 44-301 (328)
21 3dsm_A Uncharacterized protein 97.7 0.031 1.1E-06 56.5 28.0 227 60-332 17-253 (328)
22 3mbr_X Glutamine cyclotransfer 97.6 0.0092 3.1E-07 58.4 22.2 182 43-260 30-224 (243)
23 3nol_A Glutamine cyclotransfer 97.5 0.023 7.8E-07 56.2 22.5 200 87-329 45-253 (262)
24 3nol_A Glutamine cyclotransfer 97.3 0.013 4.4E-07 58.0 18.9 184 39-260 49-245 (262)
25 3vgz_A Uncharacterized protein 97.3 0.16 5.6E-06 50.3 27.2 243 36-331 45-302 (353)
26 3nok_A Glutaminyl cyclase; bet 97.3 0.015 5.1E-07 57.7 18.5 197 87-329 57-263 (268)
27 3nok_A Glutaminyl cyclase; bet 97.2 0.013 4.6E-07 58.0 17.0 149 43-231 64-215 (268)
28 3vgz_A Uncharacterized protein 97.2 0.23 7.9E-06 49.2 28.8 229 35-314 92-333 (353)
29 2iwa_A Glutamine cyclotransfer 97.1 0.11 3.7E-06 51.5 23.5 201 35-278 24-238 (266)
30 2iwa_A Glutamine cyclotransfer 97.1 0.15 5.2E-06 50.4 23.6 203 88-332 24-237 (266)
31 2ovr_B FBW7, F-BOX/WD repeat p 97.0 0.13 4.3E-06 53.7 24.3 186 91-318 245-430 (445)
32 1l0q_A Surface layer protein; 97.0 0.05 1.7E-06 55.4 20.4 223 36-316 36-265 (391)
33 3jrp_A Fusion protein of prote 96.8 0.046 1.6E-06 54.8 18.0 198 37-279 16-242 (379)
34 1l0q_A Surface layer protein; 96.6 0.15 5E-06 51.8 20.1 188 44-285 2-197 (391)
35 4ery_A WD repeat-containing pr 96.5 0.71 2.4E-05 45.1 24.1 229 36-318 27-260 (312)
36 1gxr_A ESG1, transducin-like e 96.5 0.34 1.2E-05 47.4 21.5 222 37-317 102-328 (337)
37 3q7m_A Lipoprotein YFGL, BAMB; 96.5 0.89 3E-05 46.0 26.6 174 60-282 153-344 (376)
38 3v9f_A Two-component system se 96.4 0.12 4E-06 58.8 19.5 213 61-315 428-646 (781)
39 1p22_A F-BOX/WD-repeat protein 96.3 0.23 7.7E-06 51.7 20.0 185 45-280 144-328 (435)
40 1k8k_C P40, ARP2/3 complex 41 96.3 0.19 6.6E-06 50.1 18.8 155 38-225 14-172 (372)
41 3q7m_A Lipoprotein YFGL, BAMB; 96.3 1.1 3.7E-05 45.4 28.6 186 43-282 103-303 (376)
42 3bws_A Protein LP49; two-domai 96.3 0.35 1.2E-05 49.6 21.1 204 38-283 128-340 (433)
43 3bws_A Protein LP49; two-domai 96.2 0.42 1.4E-05 49.1 21.1 215 61-316 102-324 (433)
44 4a2l_A BT_4663, two-component 96.2 0.26 8.9E-06 56.0 21.1 212 61-315 428-649 (795)
45 4ery_A WD repeat-containing pr 96.2 0.9 3.1E-05 44.4 22.5 197 37-280 70-271 (312)
46 4aez_A CDC20, WD repeat-contai 96.1 0.34 1.2E-05 49.7 19.7 210 61-317 157-371 (401)
47 1kb0_A Quinohemoprotein alcoho 96.1 0.88 3E-05 51.0 24.4 212 43-279 77-348 (677)
48 2ovr_B FBW7, F-BOX/WD repeat p 96.1 0.87 3E-05 47.2 23.0 145 94-281 208-352 (445)
49 2hqs_A Protein TOLB; TOLB, PAL 96.1 0.18 6E-06 52.7 17.6 188 60-284 203-394 (415)
50 3ow8_A WD repeat-containing pr 96.0 0.91 3.1E-05 45.2 21.8 227 37-318 85-313 (321)
51 1r5m_A SIR4-interacting protei 96.0 1.1 3.9E-05 45.0 22.8 228 36-317 112-352 (425)
52 3hfq_A Uncharacterized protein 96.0 0.5 1.7E-05 47.1 19.7 237 47-314 5-259 (347)
53 2ojh_A Uncharacterized protein 95.9 0.9 3.1E-05 43.0 20.5 195 60-285 62-266 (297)
54 1jmx_B Amine dehydrogenase; ox 95.9 0.54 1.8E-05 46.3 19.4 164 40-231 7-180 (349)
55 2ad6_A Methanol dehydrogenase 95.8 1.6 5.5E-05 47.7 24.4 119 43-181 62-193 (571)
56 2hqs_A Protein TOLB; TOLB, PAL 95.8 0.68 2.3E-05 48.2 20.4 223 60-331 159-386 (415)
57 1gxr_A ESG1, transducin-like e 95.7 0.64 2.2E-05 45.3 19.0 199 37-282 56-260 (337)
58 3scy_A Hypothetical bacterial 95.6 1.8 6.1E-05 43.3 22.3 79 45-126 14-93 (361)
59 1kb0_A Quinohemoprotein alcoho 95.6 1.8 6E-05 48.5 24.2 127 89-234 72-209 (677)
60 1q7f_A NHL, brain tumor CG1071 95.5 1.8 6.2E-05 41.6 25.8 231 34-312 31-267 (286)
61 1k8k_C P40, ARP2/3 complex 41 95.5 1.3 4.5E-05 43.9 20.8 70 200-285 213-284 (372)
62 3zwl_B Eukaryotic translation 95.4 2.2 7.5E-05 41.9 22.2 206 37-285 37-257 (369)
63 1p22_A F-BOX/WD-repeat protein 95.2 0.92 3.1E-05 47.0 18.9 174 60-278 193-366 (435)
64 4aow_A Guanine nucleotide-bind 95.2 0.95 3.3E-05 44.3 18.2 238 38-331 92-338 (340)
65 1ri6_A Putative isomerase YBHE 95.1 2.7 9.1E-05 40.9 21.9 208 37-285 43-272 (343)
66 1got_B GT-beta; complex (GTP-b 95.1 2 6.8E-05 42.8 20.5 178 94-318 154-335 (340)
67 1r5m_A SIR4-interacting protei 95.0 0.91 3.1E-05 45.8 18.0 144 95-279 217-363 (425)
68 3v9f_A Two-component system se 95.0 0.73 2.5E-05 52.2 18.7 181 61-277 470-656 (781)
69 3mkq_A Coatomer beta'-subunit; 94.9 0.88 3E-05 51.0 19.2 198 36-281 17-221 (814)
70 3jro_A Fusion protein of prote 94.8 0.25 8.7E-06 55.9 14.0 192 44-278 21-239 (753)
71 4a2l_A BT_4663, two-component 94.7 5.6 0.00019 44.9 25.3 186 61-285 108-299 (795)
72 3ow8_A WD repeat-containing pr 94.7 2.5 8.7E-05 41.8 20.1 178 94-318 91-271 (321)
73 3u4y_A Uncharacterized protein 94.6 3.6 0.00012 40.1 21.0 200 39-285 47-260 (331)
74 1ri6_A Putative isomerase YBHE 94.6 1.7 5.8E-05 42.4 18.3 163 94-286 140-319 (343)
75 1kv9_A Type II quinohemoprotei 94.6 7.1 0.00024 43.4 26.9 119 43-181 66-195 (668)
76 4g56_B MGC81050 protein; prote 94.6 0.41 1.4E-05 48.6 13.8 207 36-279 46-260 (357)
77 3u4y_A Uncharacterized protein 94.6 3.7 0.00013 40.0 21.0 193 41-280 7-210 (331)
78 3no2_A Uncharacterized protein 94.5 3.8 0.00013 39.9 21.0 212 45-313 6-230 (276)
79 3jrp_A Fusion protein of prote 94.5 0.72 2.5E-05 45.8 15.3 199 45-286 70-297 (379)
80 3fm0_A Protein CIAO1; WDR39,SG 94.4 2.1 7.2E-05 42.8 18.7 195 38-275 22-223 (345)
81 3zwl_B Eukaryotic translation 94.4 1.3 4.4E-05 43.6 16.8 236 37-317 79-337 (369)
82 1got_B GT-beta; complex (GTP-b 94.4 4.5 0.00015 40.1 25.1 225 37-317 60-292 (340)
83 1nir_A Nitrite reductase; hemo 94.4 1.2 4E-05 48.4 17.7 252 34-334 181-460 (543)
84 1w6s_A Methanol dehydrogenase 94.3 5.4 0.00019 43.9 23.2 121 43-182 62-200 (599)
85 1yiq_A Quinohemoprotein alcoho 94.2 8.7 0.0003 42.9 26.4 126 89-233 65-201 (689)
86 1vyh_C Platelet-activating fac 94.1 3.1 0.00011 42.8 19.7 152 37-230 113-269 (410)
87 3e5z_A Putative gluconolactona 94.1 4.5 0.00015 39.1 22.2 247 32-333 28-287 (296)
88 4gga_A P55CDC, cell division c 94.1 2.2 7.4E-05 43.9 18.4 84 218-318 302-387 (420)
89 2z3z_A Dipeptidyl aminopeptida 93.9 7.9 0.00027 42.5 23.6 193 60-279 235-437 (706)
90 1yiq_A Quinohemoprotein alcoho 93.8 10 0.00035 42.3 27.0 117 43-181 70-200 (689)
91 3g4e_A Regucalcin; six bladed 93.8 5.3 0.00018 38.9 20.0 239 32-313 13-260 (297)
92 3vl1_A 26S proteasome regulato 93.8 6.4 0.00022 39.7 21.9 189 44-279 109-324 (420)
93 2vdu_B TRNA (guanine-N(7)-)-me 93.8 4.4 0.00015 42.0 20.2 161 36-230 106-275 (450)
94 1pby_B Quinohemoprotein amine 93.7 1.9 6.5E-05 41.9 16.4 117 37-180 39-168 (337)
95 2ecf_A Dipeptidyl peptidase IV 93.6 3.5 0.00012 45.7 20.2 221 36-285 41-329 (741)
96 2ad6_A Methanol dehydrogenase 93.4 6.6 0.00023 42.8 21.7 126 89-233 57-194 (571)
97 3fm0_A Protein CIAO1; WDR39,SG 93.4 1.5 5.1E-05 43.9 15.3 185 94-318 27-217 (345)
98 1qks_A Cytochrome CD1 nitrite 93.4 6.6 0.00023 42.9 21.5 255 32-333 197-478 (567)
99 1kv9_A Type II quinohemoprotei 93.4 12 0.00041 41.6 25.5 125 89-233 61-196 (668)
100 4gqb_B Methylosome protein 50; 93.4 4.3 0.00015 40.8 18.8 225 36-318 86-323 (344)
101 2ojh_A Uncharacterized protein 93.3 4.8 0.00017 37.7 18.2 187 59-283 21-212 (297)
102 4g56_B MGC81050 protein; prote 93.3 1.7 5.9E-05 43.8 15.7 179 94-318 150-335 (357)
103 3pe7_A Oligogalacturonate lyas 93.3 7.2 0.00025 38.9 21.2 224 39-285 43-281 (388)
104 1sq9_A Antiviral protein SKI8; 93.3 1.3 4.4E-05 44.5 14.7 108 166-282 207-327 (397)
105 2pm9_A Protein WEB1, protein t 93.2 2 6.9E-05 43.3 16.1 205 36-281 71-298 (416)
106 3v7d_B Cell division control p 93.2 6 0.0002 40.8 20.0 145 46-231 282-426 (464)
107 3c5m_A Oligogalacturonate lyas 93.1 6.6 0.00022 39.1 19.8 158 109-286 167-338 (396)
108 1nir_A Nitrite reductase; hemo 93.1 3.9 0.00013 44.2 19.0 221 43-315 148-390 (543)
109 3mkq_A Coatomer beta'-subunit; 93.0 2 6.7E-05 48.1 17.0 191 41-282 65-264 (814)
110 3i2n_A WD repeat-containing pr 93.0 1.1 3.7E-05 44.1 13.4 196 37-278 23-244 (357)
111 1rwi_B Serine/threonine-protei 93.0 6.1 0.00021 37.2 22.3 192 37-279 28-224 (270)
112 2xdw_A Prolyl endopeptidase; a 92.9 14 0.00046 41.0 26.7 199 60-283 151-375 (710)
113 3iz6_a 40S ribosomal protein R 92.9 8.7 0.0003 38.7 20.7 200 37-283 71-286 (380)
114 1jmx_B Amine dehydrogenase; ox 92.9 2 7E-05 42.0 15.2 34 35-74 46-79 (349)
115 4aez_A CDC20, WD repeat-contai 92.8 9.1 0.00031 38.7 23.8 180 60-283 113-299 (401)
116 3dwl_C Actin-related protein 2 92.7 0.21 7.2E-06 50.3 7.6 148 45-226 24-177 (377)
117 2vdu_B TRNA (guanine-N(7)-)-me 92.7 4.3 0.00015 42.0 18.1 160 95-281 210-397 (450)
118 1vyh_C Platelet-activating fac 92.7 4.5 0.00015 41.5 18.1 63 201-279 308-371 (410)
119 4gga_A P55CDC, cell division c 92.6 8.5 0.00029 39.3 20.0 211 60-316 125-342 (420)
120 1qks_A Cytochrome CD1 nitrite 92.5 14 0.00049 40.1 23.1 203 43-293 166-390 (567)
121 4e54_B DNA damage-binding prot 92.3 1.6 5.6E-05 45.2 14.1 197 36-279 123-329 (435)
122 2aq5_A Coronin-1A; WD40 repeat 92.1 4.5 0.00015 41.0 17.1 208 37-285 86-309 (402)
123 2dg1_A DRP35, lactonase; beta 92.1 8.4 0.00029 37.6 18.6 211 38-283 50-269 (333)
124 2qc5_A Streptogramin B lactona 92.0 8.5 0.00029 36.5 25.2 198 36-284 23-224 (300)
125 3ei3_B DNA damage-binding prot 92.0 4.8 0.00016 40.2 16.9 196 36-279 77-284 (383)
126 3c5m_A Oligogalacturonate lyas 91.9 7.2 0.00024 38.8 18.1 113 165-285 167-281 (396)
127 3dm0_A Maltose-binding peripla 91.9 8.3 0.00028 42.5 20.1 196 37-281 435-636 (694)
128 3sfz_A APAF-1, apoptotic pepti 91.8 1.4 4.8E-05 52.2 14.4 194 36-279 965-1160(1249)
129 1erj_A Transcriptional repress 91.8 12 0.00042 37.8 20.6 155 36-227 127-288 (393)
130 3mmy_A MRNA export factor; mRN 91.7 7.5 0.00026 37.9 17.6 90 60-176 108-200 (368)
131 2xbg_A YCF48-like protein; pho 91.7 12 0.0004 37.3 21.7 226 35-314 38-268 (327)
132 4ggc_A P55CDC, cell division c 91.5 9.7 0.00033 36.3 18.0 86 218-318 222-307 (318)
133 3azo_A Aminopeptidase; POP fam 91.4 8.3 0.00028 42.0 19.3 217 39-285 137-377 (662)
134 2bkl_A Prolyl endopeptidase; m 91.4 7.5 0.00026 43.1 19.1 195 60-281 147-355 (695)
135 4gqb_B Methylosome protein 50; 91.4 2.6 8.9E-05 42.5 14.1 188 37-278 132-332 (344)
136 3k26_A Polycomb protein EED; W 91.2 8.3 0.00029 37.6 17.5 139 61-227 45-193 (366)
137 1w6s_A Methanol dehydrogenase 91.2 13 0.00046 40.7 20.5 128 88-234 56-201 (599)
138 1qhu_A Protein (hemopexin); be 91.1 5.4 0.00018 42.4 16.5 59 43-120 158-216 (460)
139 2pbi_B Guanine nucleotide-bind 91.1 13 0.00046 37.0 22.4 231 37-317 69-306 (354)
140 3ott_A Two-component system se 90.8 24 0.00081 39.4 23.4 186 61-283 393-592 (758)
141 2z2n_A Virginiamycin B lyase; 90.8 11 0.00038 35.6 24.7 198 36-284 18-219 (299)
142 2ynn_A Coatomer subunit beta'; 90.8 13 0.00043 36.1 19.5 225 37-318 18-251 (304)
143 2hes_X YDR267CP; beta-propelle 90.7 13 0.00046 36.4 19.5 190 94-317 118-319 (330)
144 2pbi_B Guanine nucleotide-bind 90.7 14 0.00049 36.7 19.1 135 60-228 176-317 (354)
145 1pjx_A Dfpase, DIISOPROPYLFLUO 90.7 7.4 0.00025 37.4 16.2 158 94-281 28-212 (314)
146 1yfq_A Cell cycle arrest prote 90.6 13 0.00044 36.0 19.0 187 41-277 21-225 (342)
147 2xdw_A Prolyl endopeptidase; a 90.6 24 0.00081 39.0 25.7 197 59-285 207-424 (710)
148 1pgu_A Actin interacting prote 90.1 13 0.00044 39.5 18.9 106 166-285 183-291 (615)
149 1pby_B Quinohemoprotein amine 90.1 11 0.00037 36.3 16.9 206 37-282 87-315 (337)
150 1yfq_A Cell cycle arrest prote 89.9 11 0.00038 36.5 16.9 65 41-119 66-131 (342)
151 1sq9_A Antiviral protein SKI8; 89.9 17 0.00057 36.1 22.7 71 200-280 197-270 (397)
152 2ynn_A Coatomer subunit beta'; 89.9 5 0.00017 39.1 14.2 191 40-282 64-264 (304)
153 2aq5_A Coronin-1A; WD40 repeat 89.9 4.8 0.00016 40.7 14.6 196 45-284 145-349 (402)
154 1rwi_B Serine/threonine-protei 89.8 9.7 0.00033 35.7 16.0 182 45-277 79-264 (270)
155 1pex_A Collagenase-3, MMP-13; 89.7 13 0.00045 34.9 16.3 155 89-282 28-197 (207)
156 3sfz_A APAF-1, apoptotic pepti 89.5 13 0.00044 43.9 19.9 201 37-285 620-836 (1249)
157 1pjx_A Dfpase, DIISOPROPYLFLUO 89.4 16 0.00053 35.1 21.3 217 37-279 22-258 (314)
158 1itv_A MMP9; adaptive molecula 89.3 14 0.00047 34.4 16.0 146 43-228 16-176 (195)
159 4aow_A Guanine nucleotide-bind 89.3 5.6 0.00019 38.6 14.1 149 94-282 97-251 (340)
160 4a11_B DNA excision repair pro 89.3 11 0.00038 37.3 16.7 202 34-279 45-278 (408)
161 3dr2_A Exported gluconolactona 89.1 14 0.00047 36.0 16.8 239 33-312 46-294 (305)
162 3iz6_a 40S ribosomal protein R 89.0 20 0.00069 35.9 20.3 185 96-318 171-367 (380)
163 3ott_A Two-component system se 89.0 32 0.0011 38.3 22.7 179 61-284 83-267 (758)
164 3dwl_C Actin-related protein 2 89.0 1.6 5.6E-05 43.6 10.1 150 94-278 22-178 (377)
165 3odt_A Protein DOA1; ubiquitin 88.9 16 0.00055 34.6 20.8 70 199-285 194-263 (313)
166 3hfq_A Uncharacterized protein 88.6 5.6 0.00019 39.2 13.7 169 35-234 144-327 (347)
167 2ecf_A Dipeptidyl peptidase IV 88.4 28 0.00096 38.2 20.7 148 166-330 263-413 (741)
168 3iuj_A Prolyl endopeptidase; h 88.4 27 0.00092 38.6 20.5 194 60-283 155-365 (693)
169 3odt_A Protein DOA1; ubiquitin 88.3 17 0.0006 34.3 19.5 193 37-281 23-218 (313)
170 3fvz_A Peptidyl-glycine alpha- 88.3 21 0.0007 35.1 30.5 250 36-315 27-311 (329)
171 2pm9_A Protein WEB1, protein t 88.3 12 0.00041 37.4 16.2 151 95-279 178-339 (416)
172 3jro_A Fusion protein of prote 88.3 3.7 0.00013 46.2 13.3 184 94-318 20-230 (753)
173 3vl1_A 26S proteasome regulato 88.2 23 0.00077 35.5 22.9 104 144-277 258-365 (420)
174 1erj_A Transcriptional repress 88.0 24 0.00082 35.6 20.3 148 94-278 134-288 (393)
175 3e5z_A Putative gluconolactona 87.9 18 0.00063 34.6 16.7 194 37-279 73-288 (296)
176 2ymu_A WD-40 repeat protein; u 87.6 23 0.00079 37.3 18.7 174 94-317 396-571 (577)
177 2pm7_B Protein transport prote 87.5 21 0.00072 34.3 18.0 72 38-124 15-91 (297)
178 2hes_X YDR267CP; beta-propelle 87.4 18 0.00062 35.5 16.6 152 94-277 164-328 (330)
179 1yr2_A Prolyl oligopeptidase; 87.3 13 0.00044 41.5 17.1 162 94-284 278-448 (741)
180 4a11_B DNA excision repair pro 87.2 8.4 0.00029 38.2 14.1 54 217-279 314-367 (408)
181 2gop_A Trilobed protease; beta 87.0 12 0.0004 36.7 14.9 192 59-283 42-257 (347)
182 3scy_A Hypothetical bacterial 86.9 25 0.00085 34.6 24.1 75 200-285 221-301 (361)
183 2bkl_A Prolyl endopeptidase; m 86.9 20 0.00068 39.5 18.2 260 42-330 78-349 (695)
184 1q7f_A NHL, brain tumor CG1071 86.8 21 0.00073 33.7 21.9 181 94-314 40-225 (286)
185 3bg1_A Protein SEC13 homolog; 86.8 10 0.00036 37.0 14.3 73 37-124 18-95 (316)
186 3no2_A Uncharacterized protein 86.7 24 0.00081 34.1 18.3 203 34-282 39-259 (276)
187 4e54_B DNA damage-binding prot 86.6 2.4 8.1E-05 43.9 9.8 148 94-279 131-284 (435)
188 1flg_A Protein (quinoprotein e 86.4 41 0.0014 36.5 25.1 117 43-181 68-201 (582)
189 3ei3_B DNA damage-binding prot 86.1 28 0.00096 34.4 19.6 145 96-277 87-236 (383)
190 3v7d_B Cell division control p 86.1 32 0.0011 35.1 27.8 94 166-280 290-384 (464)
191 2dg1_A DRP35, lactonase; beta 86.0 3.8 0.00013 40.2 10.6 155 94-277 55-213 (333)
192 1yr2_A Prolyl oligopeptidase; 85.8 22 0.00077 39.5 18.0 195 60-282 189-400 (741)
193 2qc5_A Streptogramin B lactona 85.7 24 0.00082 33.2 24.7 196 38-284 67-266 (300)
194 1gen_A Gelatinase A; hydrolase 85.6 23 0.00079 33.4 15.4 153 89-279 35-204 (218)
195 3hrp_A Uncharacterized protein 85.5 35 0.0012 35.0 26.9 209 36-285 134-362 (409)
196 2xyi_A Probable histone-bindin 85.4 3.5 0.00012 42.6 10.3 60 201-277 290-353 (430)
197 1qhu_A Protein (hemopexin); be 85.3 25 0.00086 37.2 16.9 58 94-175 158-215 (460)
198 1xfd_A DIP, dipeptidyl aminope 85.2 23 0.00078 38.8 17.5 109 61-182 38-150 (723)
199 1pex_A Collagenase-3, MMP-13; 85.0 24 0.00083 33.0 15.1 147 43-230 33-196 (207)
200 3f3f_A Nucleoporin SEH1; struc 85.0 27 0.00091 33.2 21.6 63 201-278 182-250 (351)
201 3b7f_A Glycosyl hydrolase, BNR 84.7 29 0.00099 35.2 17.0 192 62-285 33-270 (394)
202 2ghs_A AGR_C_1268P; regucalcin 84.5 21 0.00073 35.1 15.4 146 94-276 60-209 (326)
203 2z2n_A Virginiamycin B lyase; 84.4 27 0.00093 32.8 25.2 196 37-284 61-261 (299)
204 2z3z_A Dipeptidyl aminopeptida 84.4 51 0.0017 35.9 27.4 152 165-332 234-391 (706)
205 1itv_A MMP9; adaptive molecula 83.9 27 0.00092 32.3 16.5 151 89-279 11-176 (195)
206 2pm7_B Protein transport prote 83.6 27 0.00094 33.4 15.5 72 201-285 219-294 (297)
207 3g4e_A Regucalcin; six bladed 83.5 19 0.00066 34.8 14.4 151 94-280 24-185 (297)
208 1pgu_A Actin interacting prote 83.4 48 0.0016 34.8 22.2 142 95-277 456-614 (615)
209 3azo_A Aminopeptidase; POP fam 83.3 21 0.00071 38.7 16.0 170 39-234 195-377 (662)
210 3ju4_A Endo-N-acetylneuraminid 82.8 29 0.00099 36.0 15.1 185 69-261 269-482 (670)
211 3dm0_A Maltose-binding peripla 82.6 16 0.00055 40.1 14.9 148 94-279 441-594 (694)
212 1su3_A Interstitial collagenas 81.1 33 0.0011 36.1 15.9 156 89-283 267-438 (450)
213 2mad_H Methylamine dehydrogena 81.0 50 0.0017 33.4 22.7 72 200-282 278-355 (373)
214 3frx_A Guanine nucleotide-bind 80.9 42 0.0014 32.5 22.7 148 39-228 72-229 (319)
215 3iuj_A Prolyl endopeptidase; h 80.8 61 0.0021 35.7 18.8 166 36-234 238-413 (693)
216 3pe7_A Oligogalacturonate lyas 80.3 17 0.00057 36.1 12.9 161 59-229 215-387 (388)
217 3gre_A Serine/threonine-protei 80.2 51 0.0017 33.2 16.8 111 144-283 181-298 (437)
218 1xfd_A DIP, dipeptidyl aminope 80.0 21 0.0007 39.1 14.5 64 166-232 228-295 (723)
219 1gen_A Gelatinase A; hydrolase 79.7 41 0.0014 31.6 15.7 147 43-228 40-204 (218)
220 2xzm_R RACK1; ribosome, transl 79.0 50 0.0017 32.2 20.0 68 38-120 82-150 (343)
221 1flg_A Protein (quinoprotein e 78.9 77 0.0026 34.3 24.7 124 89-232 63-201 (582)
222 2xbg_A YCF48-like protein; pho 78.7 53 0.0018 32.3 21.9 198 37-285 84-287 (327)
223 3i2n_A WD repeat-containing pr 78.0 12 0.0004 36.4 10.6 25 94-123 179-203 (357)
224 3bg1_A Protein SEC13 homolog; 77.2 40 0.0014 32.6 14.3 31 251-287 273-304 (316)
225 3o4h_A Acylamino-acid-releasin 77.0 42 0.0014 35.7 15.6 96 169-281 135-231 (582)
226 2ghs_A AGR_C_1268P; regucalcin 76.3 60 0.0021 31.7 21.7 155 35-225 52-209 (326)
227 2xyi_A Probable histone-bindin 75.9 16 0.00054 37.5 11.4 62 200-278 243-310 (430)
228 3c7x_A Matrix metalloproteinas 75.8 21 0.0007 33.1 11.0 147 43-228 15-177 (196)
229 3fvz_A Peptidyl-glycine alpha- 75.6 62 0.0021 31.5 25.5 160 94-277 154-322 (329)
230 3hxj_A Pyrrolo-quinoline quino 75.5 13 0.00045 35.9 10.1 135 94-282 70-210 (330)
231 1k32_A Tricorn protease; prote 74.9 1.3E+02 0.0044 34.8 22.0 69 199-284 306-375 (1045)
232 1su3_A Interstitial collagenas 74.5 89 0.0031 32.8 16.8 149 43-231 272-437 (450)
233 3lrv_A PRE-mRNA-splicing facto 73.9 45 0.0015 32.5 13.8 66 200-280 138-204 (343)
234 3ju4_A Endo-N-acetylneuraminid 73.2 44 0.0015 34.7 13.0 191 112-316 260-482 (670)
235 2ymu_A WD-40 repeat protein; u 72.3 97 0.0033 32.3 20.9 173 94-317 314-489 (577)
236 3b7f_A Glycosyl hydrolase, BNR 72.1 85 0.0029 31.5 21.1 211 43-284 67-329 (394)
237 3ba0_A Macrophage metalloelast 71.9 90 0.0031 31.7 16.7 155 89-282 185-355 (365)
238 3o4h_A Acylamino-acid-releasin 69.6 38 0.0013 36.1 12.9 178 62-283 134-320 (582)
239 3frx_A Guanine nucleotide-bind 69.2 84 0.0029 30.3 17.0 146 94-280 76-230 (319)
240 3dr2_A Exported gluconolactona 67.4 58 0.002 31.3 12.7 104 59-182 168-274 (305)
241 3k26_A Polycomb protein EED; W 67.4 89 0.0031 29.9 15.2 97 201-317 85-183 (366)
242 2hz6_A Endoplasmic reticulum t 66.8 2 6.9E-05 43.9 1.8 70 35-124 2-75 (369)
243 4h5i_A Guanine nucleotide-exch 66.8 1E+02 0.0036 30.4 19.4 202 37-278 138-344 (365)
244 4d9s_A UVB-resistance protein 65.7 1.2E+02 0.0042 30.8 20.5 19 33-51 77-95 (406)
245 3c7x_A Matrix metalloproteinas 65.5 38 0.0013 31.3 10.3 105 43-177 61-177 (196)
246 1npe_A Nidogen, entactin; glyc 65.5 89 0.003 29.2 25.5 200 35-283 39-244 (267)
247 3lrv_A PRE-mRNA-splicing facto 64.8 1E+02 0.0036 29.8 16.1 63 45-121 140-203 (343)
248 1k32_A Tricorn protease; prote 64.5 2.1E+02 0.007 33.0 23.2 194 45-285 215-417 (1045)
249 2mad_H Methylamine dehydrogena 64.3 1.2E+02 0.0042 30.4 28.4 75 41-122 30-109 (373)
250 4ggc_A P55CDC, cell division c 62.2 1E+02 0.0035 28.8 21.6 73 35-123 28-102 (318)
251 3oyo_A Hemopexin fold protein 61.3 1.1E+02 0.0037 28.8 15.4 104 93-225 69-197 (225)
252 3gre_A Serine/threonine-protei 59.6 1.4E+02 0.0049 29.7 22.6 152 94-279 181-361 (437)
253 1hxn_A Hemopexin, HPX; heme, b 58.5 1.2E+02 0.004 28.5 12.4 110 36-175 21-144 (219)
254 3f3f_A Nucleoporin SEH1; struc 58.4 1.2E+02 0.0041 28.4 21.2 29 251-285 317-346 (351)
255 2fp8_A Strictosidine synthase; 57.4 1.4E+02 0.0047 28.7 16.6 203 60-285 40-277 (322)
256 1ck7_A Protein (gelatinase A); 56.4 61 0.0021 35.7 11.3 152 89-278 448-616 (631)
257 1ck7_A Protein (gelatinase A); 56.0 81 0.0028 34.7 12.2 152 35-226 446-615 (631)
258 2p9w_A MAL S 1 allergenic prot 56.0 1.3E+02 0.0043 30.4 12.8 145 39-209 143-304 (334)
259 2gop_A Trilobed protease; beta 55.0 1.5E+02 0.0051 28.4 17.6 201 41-283 68-297 (347)
260 3dw8_B Serine/threonine-protei 54.5 1.7E+02 0.0059 29.0 17.1 22 202-229 240-261 (447)
261 3vu4_A KMHSV2; beta-propeller 53.8 1.7E+02 0.0057 28.6 21.7 70 37-123 24-94 (355)
262 1sqj_A OXG-RCBH, oligoxylogluc 53.8 2.8E+02 0.0094 31.1 30.1 201 61-285 38-277 (789)
263 3hxj_A Pyrrolo-quinoline quino 53.6 1.5E+02 0.0052 28.0 16.3 138 92-281 105-249 (330)
264 3ba0_A Macrophage metalloelast 53.4 97 0.0033 31.5 11.7 106 43-180 236-355 (365)
265 2p4o_A Hypothetical protein; p 51.9 1.7E+02 0.0057 28.0 19.7 135 61-226 96-242 (306)
266 2fp8_A Strictosidine synthase; 51.8 1.7E+02 0.0058 28.1 18.5 199 43-278 91-314 (322)
267 3mmy_A MRNA export factor; mRN 51.5 1.6E+02 0.0056 27.8 16.3 143 95-279 54-201 (368)
268 2p4o_A Hypothetical protein; p 49.2 1.8E+02 0.0063 27.7 20.8 207 29-283 29-247 (306)
269 1nr0_A Actin interacting prote 48.5 2.7E+02 0.0094 29.5 21.5 193 45-282 161-360 (611)
270 2xe4_A Oligopeptidase B; hydro 46.9 3.2E+02 0.011 30.2 15.8 171 33-234 272-466 (751)
271 2xe4_A Oligopeptidase B; hydro 46.7 2E+02 0.0068 32.0 14.0 98 165-275 294-398 (751)
272 3c75_H MADH, methylamine dehyd 46.2 2.7E+02 0.0092 28.8 19.8 252 42-334 83-404 (426)
273 2ece_A 462AA long hypothetical 45.7 2.9E+02 0.0099 29.0 16.9 172 94-285 95-297 (462)
274 2xzm_R RACK1; ribosome, transl 45.5 2.2E+02 0.0074 27.5 18.1 24 94-122 87-110 (343)
275 2cn3_A Xyloglucanase, beta-1,4 44.2 3.6E+02 0.012 29.7 27.6 232 61-314 46-321 (737)
276 1z68_A Fibroblast activation p 43.5 62 0.0021 35.3 9.1 63 60-122 36-102 (719)
277 3sjl_D Methylamine dehydrogena 42.2 3E+02 0.01 28.1 21.5 73 199-282 290-368 (386)
278 4d9s_A UVB-resistance protein 39.9 3.1E+02 0.011 27.7 16.4 18 33-51 182-199 (406)
279 1npe_A Nidogen, entactin; glyc 39.7 2.3E+02 0.0079 26.1 22.3 152 42-232 89-244 (267)
280 2oiz_A Aromatic amine dehydrog 38.9 2.9E+02 0.01 27.1 22.0 103 60-178 31-143 (361)
281 3lp9_A LS-24; SEED albumin, pl 38.6 76 0.0026 30.0 7.6 61 94-176 129-202 (227)
282 1nr0_A Actin interacting prote 38.4 3.8E+02 0.013 28.3 20.7 158 38-232 196-361 (611)
283 4hvt_A Ritya.17583.B, post-pro 37.7 4.6E+02 0.016 29.0 15.6 104 165-281 268-385 (711)
284 3m0c_C LDL receptor, low-densi 36.6 5E+02 0.017 29.1 23.2 181 60-284 404-596 (791)
285 1n7d_A LDL receptor, low-densi 36.3 2.3E+02 0.0078 31.3 12.3 179 61-283 387-577 (699)
286 2oaj_A Protein SNI1; WD40 repe 35.6 5.3E+02 0.018 29.1 24.7 200 36-282 21-247 (902)
287 1z68_A Fibroblast activation p 35.4 1.3E+02 0.0044 32.7 10.0 108 110-234 36-147 (719)
288 4a5s_A Dipeptidyl peptidase 4 35.2 4.7E+02 0.016 28.4 16.7 66 60-126 36-108 (740)
289 3p5b_L Low density lipoprotein 34.6 3.7E+02 0.013 27.0 19.5 181 60-284 92-284 (400)
290 2p9w_A MAL S 1 allergenic prot 33.1 3.8E+02 0.013 26.8 22.2 229 60-315 35-304 (334)
291 1fwx_A Nitrous oxide reductase 32.6 4.8E+02 0.016 28.3 13.5 236 42-312 100-404 (595)
292 3sjl_D Methylamine dehydrogena 32.3 4.2E+02 0.014 26.9 21.4 84 35-123 82-173 (386)
293 1hxn_A Hemopexin, HPX; heme, b 31.9 2.2E+02 0.0075 26.6 9.6 103 93-226 27-144 (219)
294 3dw8_B Serine/threonine-protei 30.3 4E+02 0.014 26.1 15.8 28 200-233 353-380 (447)
295 4h5i_A Guanine nucleotide-exch 30.1 4E+02 0.014 26.0 20.7 176 111-318 158-335 (365)
296 4a5s_A Dipeptidyl peptidase 4 29.7 3.4E+02 0.012 29.6 12.4 111 110-234 36-149 (740)
297 2oiz_A Aromatic amine dehydrog 28.7 3.4E+02 0.011 26.7 11.1 73 38-123 260-340 (361)
298 4hvt_A Ritya.17583.B, post-pro 28.0 6.5E+02 0.022 27.8 14.7 150 59-234 268-437 (711)
299 1jof_A Carboxy-CIS,CIS-muconat 27.8 4.2E+02 0.014 25.6 18.3 68 47-123 5-74 (365)
300 1n7d_A LDL receptor, low-densi 27.6 5.9E+02 0.02 27.9 13.8 149 93-279 463-616 (699)
301 3oyo_A Hemopexin fold protein 27.1 1.4E+02 0.0048 28.0 7.3 68 36-118 120-197 (225)
302 1ijq_A LDL receptor, low-densi 26.1 4.4E+02 0.015 25.2 23.2 181 60-284 10-202 (316)
303 2oaj_A Protein SNI1; WD40 repe 20.9 9.2E+02 0.031 27.1 18.9 149 94-282 28-187 (902)
No 1
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=4.2e-42 Score=353.13 Aligned_cols=283 Identities=18% Similarity=0.316 Sum_probs=237.8
Q ss_pred CCCCCCCcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEccc--
Q 008089 26 SSGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGT-- 103 (578)
Q Consensus 26 g~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~-- 103 (578)
+..|.+|..|+++.+ +++||+|||. .....+++++||+.+++|..+. ++|.+|.+|+++.++++|||+||.
T Consensus 9 ~~~~~~~~~~~~~~~--~~~i~v~GG~--~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~ 81 (308)
T 1zgk_A 9 HSSGLVPRGSHAPKV--GRLIYTAGGY--FRQSLSYLEAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNN 81 (308)
T ss_dssp ------------CCC--CCCEEEECCB--SSSBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEE
T ss_pred ccCCeeeCCccccCC--CCEEEEEeCc--CCCCcceEEEEcCCCCeEeECC---CCCcccccceEEEECCEEEEECCCcC
Confidence 456789999999988 5579999998 2346789999999999999964 889999999999999999999998
Q ss_pred --CCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEe
Q 008089 104 --DGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRA 181 (578)
Q Consensus 104 --~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~ 181 (578)
++...++++++||+.+++|++++ ++|.+|.+|+++.++++|||+||.. .....+++++||+.+++|+.+
T Consensus 82 ~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~------~~~~~~~~~~yd~~~~~W~~~ 152 (308)
T 1zgk_A 82 SPDGNTDSSALDCYNPMTNQWSPCA---PMSVPRNRIGVGVIDGHIYAVGGSH------GCIHHNSVERYEPERDEWHLV 152 (308)
T ss_dssp ETTEEEECCCEEEEETTTTEEEECC---CCSSCCBTCEEEEETTEEEEECCEE------TTEECCCEEEEETTTTEEEEC
T ss_pred CCCCCeecceEEEECCCCCeEeECC---CCCcCccccEEEEECCEEEEEcCCC------CCcccccEEEECCCCCeEeEC
Confidence 55567899999999999999876 6899999999999999999999964 234678999999999999998
Q ss_pred ccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCcc
Q 008089 182 TTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFT 261 (578)
Q Consensus 182 ~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~ 261 (578)
. .+|.+|..|++++++++|||+||.+... .++++++||+.+++|+.+.. +|.+|.+|+++.++++|||+||..
T Consensus 153 ~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~ 225 (308)
T 1zgk_A 153 A---PMLTRRIGVGVAVLNRLLYAVGGFDGTN-RLNSAECYYPERNEWRMITA---MNTIRSGAGVCVLHNCIYAAGGYD 225 (308)
T ss_dssp C---CCSSCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEECCBC
T ss_pred C---CCCccccceEEEEECCEEEEEeCCCCCC-cCceEEEEeCCCCeEeeCCC---CCCccccceEEEECCEEEEEeCCC
Confidence 7 5788999999999999999999987665 48999999999999999976 889999999999999999999987
Q ss_pred CCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEecccccceeccc
Q 008089 262 DSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEK 340 (578)
Q Consensus 262 ~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~~~~~~~~~l~~ 340 (578)
.. ..++++++||+++++|+.+.. .|.+|..++++.+ +++|||+||.+.. ..++++|.|+.....|..+..
T Consensus 226 ~~-~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~----~~~i~v~GG~~~~-~~~~~v~~yd~~~~~W~~~~~ 295 (308)
T 1zgk_A 226 GQ-DQLNSVERYDVETETWTFVAP---MKHRRSALGITVH----QGRIYVLGGYDGH-TFLDSVECYDPDTDTWSEVTR 295 (308)
T ss_dssp SS-SBCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEE----TTEEEEECCBCSS-CBCCEEEEEETTTTEEEEEEE
T ss_pred CC-CccceEEEEeCCCCcEEECCC---CCCCccceEEEEE----CCEEEEEcCcCCC-cccceEEEEcCCCCEEeecCC
Confidence 53 458999999999999999864 5778888876654 7899999998753 567899999999888877644
No 2
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.7e-40 Score=336.18 Aligned_cols=268 Identities=19% Similarity=0.300 Sum_probs=234.6
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeE
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W 122 (578)
++.||+|||.+.. ..+++++||+.+++|..+. ++|.+|.+|+++.++++|||+||.++...++++++||+.+++|
T Consensus 15 ~~~i~v~GG~~~~--~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 89 (302)
T 2xn4_A 15 PKLMVVVGGQAPK--AIRSVECYDFKEERWHQVA---ELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQW 89 (302)
T ss_dssp CEEEEEECCBSSS--BCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCC--CCCcEEEEcCcCCcEeEcc---cCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCce
Confidence 4589999998653 5678999999999999964 8899999999999999999999998877889999999999999
Q ss_pred EecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCE
Q 008089 123 ISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNK 202 (578)
Q Consensus 123 ~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~ 202 (578)
+.++ ++|.+|.+|++++++++|||+||.. ....++++++||+.+++|+.+. .+|.+|..|++++++++
T Consensus 90 ~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~------~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~ 157 (302)
T 2xn4_A 90 TSVA---NMRDRRSTLGAAVLNGLLYAVGGFD------GSTGLSSVEAYNIKSNEWFHVA---PMNTRRSSVGVGVVGGL 157 (302)
T ss_dssp EEEC---CCSSCCBSCEEEEETTEEEEEEEEC------SSCEEEEEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTE
T ss_pred eeCC---CCCccccceEEEEECCEEEEEcCCC------CCccCceEEEEeCCCCeEeecC---CCCCcccCceEEEECCE
Confidence 9886 7899999999999999999999963 2346799999999999999996 57889999999999999
Q ss_pred EEEEecCCCCC-cccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEE
Q 008089 203 IIVIGGEDGHD-YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (578)
Q Consensus 203 lyV~GG~~~~~-~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~ 281 (578)
|||+||.+... ..++++++||+.+++|+.+.. +|.+|.+|+++.++++|||+||.+.. ...+++++||+++++|+
T Consensus 158 iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 158 LYAVGGYDVASRQCLSTVECYNATTNEWTYIAE---MSTRRSGAGVGVLNNLLYAVGGHDGP-LVRKSVEVYDPTTNAWR 233 (302)
T ss_dssp EEEECCEETTTTEECCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCBSSS-SBCCCEEEEETTTTEEE
T ss_pred EEEEeCCCCCCCccccEEEEEeCCCCcEEECCC---CccccccccEEEECCEEEEECCCCCC-cccceEEEEeCCCCCEe
Confidence 99999986553 468899999999999999976 88999999999999999999998653 45789999999999999
Q ss_pred EEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEecccccceecc
Q 008089 282 KVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLE 339 (578)
Q Consensus 282 ~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~~~~~~~~~l~ 339 (578)
.+.. .|.+|..++++.+ ++.|||+||.+.. ..+++++.++.....|..+.
T Consensus 234 ~~~~---~~~~r~~~~~~~~----~~~i~v~GG~~~~-~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 234 QVAD---MNMCRRNAGVCAV----NGLLYVVGGDDGS-CNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp EECC---CSSCCBSCEEEEE----TTEEEEECCBCSS-SBCCCEEEEETTTTEEEECS
T ss_pred eCCC---CCCccccCeEEEE----CCEEEEECCcCCC-cccccEEEEcCCCCeEEECC
Confidence 9875 4667877775543 8899999998754 45789999999988886654
No 3
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=8e-40 Score=335.06 Aligned_cols=267 Identities=19% Similarity=0.338 Sum_probs=234.4
Q ss_pred CEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEE
Q 008089 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWI 123 (578)
Q Consensus 44 ~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~ 123 (578)
+.||+|||... .+++++||+.+++|..+. ++|.+|.+|+++.++++|||+||.+ ...++++++||+.+++|+
T Consensus 12 ~~l~~~GG~~~----~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~d~~~~~W~ 83 (306)
T 3ii7_A 12 DYRIALFGGSQ----PQSCRYFNPKDYSWTDIR---CPFEKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCYNVVKDSWY 83 (306)
T ss_dssp CEEEEEECCSS----TTSEEEEETTTTEEEECC---CCSCCCBSCEEEEETTEEEEECCBS-SSBCCEEEEEETTTTEEE
T ss_pred ceEEEEeCCCC----CceEEEecCCCCCEecCC---CCCcccceeEEEEECCEEEEEeCCC-CCCcceEEEEeCCCCeEE
Confidence 57999999765 578999999999999964 7899999999999999999999998 667899999999999999
Q ss_pred ecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEE
Q 008089 124 SPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKI 203 (578)
Q Consensus 124 ~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~l 203 (578)
.+. ++|.+|.+|+++.++++||||||... .....+++++||+.+++|+.+. .+|.+|..|++++++++|
T Consensus 84 ~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~-----~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~i 152 (306)
T 3ii7_A 84 SKL---GPPTPRDSLAACAAEGKIYTSGGSEV-----GNSALYLFECYDTRTESWHTKP---SMLTQRCSHGMVEANGLI 152 (306)
T ss_dssp EEE---CCSSCCBSCEEEEETTEEEEECCBBT-----TBSCCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEE
T ss_pred ECC---CCCccccceeEEEECCEEEEECCCCC-----CCcEeeeEEEEeCCCCceEeCC---CCcCCcceeEEEEECCEE
Confidence 876 68999999999999999999999631 3346789999999999999986 678899999999999999
Q ss_pred EEEecCCCCCc---ccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcE
Q 008089 204 IVIGGEDGHDY---YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 280 (578)
Q Consensus 204 yV~GG~~~~~~---~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W 280 (578)
||+||...... .++++++||+++++|+.+.. +|.+|.+|+++.++++|||+||.... ..++++++||+.+++|
T Consensus 153 yv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~-~~~~~~~~yd~~~~~W 228 (306)
T 3ii7_A 153 YVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP---MIEARKNHGLVFVKDKIFAVGGQNGL-GGLDNVEYYDIKLNEW 228 (306)
T ss_dssp EEECCEESCTTTCEECCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCEETT-EEBCCEEEEETTTTEE
T ss_pred EEECCCCCCCCcccccceEEEeCCCCCeEEECCC---ccchhhcceEEEECCEEEEEeCCCCC-CCCceEEEeeCCCCcE
Confidence 99999865543 38999999999999999986 88999999999999999999998764 4578999999999999
Q ss_pred EEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEecccccceecccc
Q 008089 281 TKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEKL 341 (578)
Q Consensus 281 ~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~~~~~~~~~l~~l 341 (578)
+.+.. .|.+|..++++.+ +++|||+||.+.. ..++++|.++.....|..+..+
T Consensus 229 ~~~~~---~p~~r~~~~~~~~----~~~i~v~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~ 281 (306)
T 3ii7_A 229 KMVSP---MPWKGVTVKCAAV----GSIVYVLAGFQGV-GRLGHILEYNTETDKWVANSKV 281 (306)
T ss_dssp EECCC---CSCCBSCCEEEEE----TTEEEEEECBCSS-SBCCEEEEEETTTTEEEEEEEE
T ss_pred EECCC---CCCCccceeEEEE----CCEEEEEeCcCCC-eeeeeEEEEcCCCCeEEeCCCc
Confidence 99854 5778888876654 8899999999754 4678999999998888776543
No 4
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.5e-39 Score=331.98 Aligned_cols=271 Identities=21% Similarity=0.371 Sum_probs=236.1
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCe-
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT- 121 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~- 121 (578)
++.||+|||+.......+++++||+.+++|..+. .+|.+|.+|+++.++++||++||.++...++++++||+.+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLP---SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCC---CCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 5579999995443446789999999999999965 788899999999999999999999877788999999999999
Q ss_pred --EEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEe
Q 008089 122 --WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW 199 (578)
Q Consensus 122 --W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~ 199 (578)
|+.+. ++|.+|.+|+++.++++|||+||.. .....+++++||+.+++|+.+. .+|.+|..|+++++
T Consensus 91 ~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~------~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~ 158 (301)
T 2vpj_A 91 GVWYSVA---PMNVRRGLAGATTLGDMIYVSGGFD------GSRRHTSMERYDPNIDQWSMLG---DMQTAREGAGLVVA 158 (301)
T ss_dssp CCCEEEC---CCSSCCBSCEEEEETTEEEEECCBC------SSCBCCEEEEEETTTTEEEEEE---ECSSCCBSCEEEEE
T ss_pred CeeEECC---CCCCCccceeEEEECCEEEEEcccC------CCcccceEEEEcCCCCeEEECC---CCCCCcccceEEEE
Confidence 99875 7899999999999999999999964 2234789999999999999997 56889999999999
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 200 ~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
+++|||+||.+... .++++++||+.+++|+.+.. +|.+|.+|+++.++++|||+||.+.. ..++++++||+++++
T Consensus 159 ~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 159 SGVIYCLGGYDGLN-ILNSVEKYDPHTGHWTNVTP---MATKRSGAGVALLNDHIYVVGGFDGT-AHLSSVEAYNIRTDS 233 (301)
T ss_dssp TTEEEEECCBCSSC-BCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCBCSS-SBCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCc-ccceEEEEeCCCCcEEeCCC---CCcccccceEEEECCEEEEEeCCCCC-cccceEEEEeCCCCc
Confidence 99999999987654 78999999999999999975 88999999999999999999998754 348899999999999
Q ss_pred EEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEecccccceecccc
Q 008089 280 WTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEKL 341 (578)
Q Consensus 280 W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~~~~~~~~~l~~l 341 (578)
|+.+.. .|.+|..++++.+ +++|||+||.+.. ..++++|.++.....|..+..+
T Consensus 234 W~~~~~---~p~~r~~~~~~~~----~~~i~v~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~ 287 (301)
T 2vpj_A 234 WTTVTS---MTTPRCYVGATVL----RGRLYAIAGYDGN-SLLSSIECYDPIIDSWEVVTSM 287 (301)
T ss_dssp EEEECC---CSSCCBSCEEEEE----TTEEEEECCBCSS-SBEEEEEEEETTTTEEEEEEEE
T ss_pred EEECCC---CCCcccceeEEEE----CCEEEEEcCcCCC-cccccEEEEcCCCCeEEEcCCC
Confidence 999864 4778888876554 7899999998755 4678999999988888766543
No 5
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=6.8e-40 Score=342.92 Aligned_cols=291 Identities=20% Similarity=0.237 Sum_probs=229.9
Q ss_pred CCCCCCcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcC--CCcEEEeeecCCCC-CCCcceeEEEECCEEEEEccc
Q 008089 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTV--NQTWSQPVIKGSPP-TPRDSHSCTTVGENLYVFGGT 103 (578)
Q Consensus 27 ~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~--t~~W~~l~~~g~~P-~~R~~hs~~~~~~kIYv~GG~ 103 (578)
.+|.+|.+|+++++ +++|||+||... +++++||+. +++|+.+. ++| .+|.+|++++++++|||+||.
T Consensus 5 ~lP~~r~~~~~~~~--~~~iyv~GG~~~-----~~~~~~d~~~~~~~W~~~~---~~p~~~R~~~~~~~~~~~lyv~GG~ 74 (357)
T 2uvk_A 5 ETPVPFKSGTGAID--NDTVYIGLGSAG-----TAWYKLDTQAKDKKWTALA---AFPGGPRDQATSAFIDGNLYVFGGI 74 (357)
T ss_dssp CCSSCCCSCEEEEE--TTEEEEECGGGT-----TCEEEEETTSSSCCEEECC---CCTTCCCBSCEEEEETTEEEEECCE
T ss_pred CCCccccceEEEEE--CCEEEEEeCcCC-----CeEEEEccccCCCCeeECC---CCCCCcCccceEEEECCEEEEEcCC
Confidence 67899999999888 668999999753 479999998 48999965 688 899999999999999999998
Q ss_pred -C----CCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCC--------------------
Q 008089 104 -D----GMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSN-------------------- 158 (578)
Q Consensus 104 -~----~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~-------------------- 158 (578)
+ ....++++|+||+.+++|+++.... |.+|.+|+++.++++||||||+.....
T Consensus 75 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (357)
T 2uvk_A 75 GKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA--PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKI 152 (357)
T ss_dssp EECTTSCEEECCCEEEEETTTTEEEECSCCC--SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCccceeeccEEEEeCCCCcEEECCCCC--CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhh
Confidence 3 2346799999999999999987432 599999999999999999999632100
Q ss_pred --------CCCceeeceEEEEEcCcceEEEeccCCCCCCCCC-ceeEEEeCCEEEEEecCCCCCcccCceEEEEC--CCC
Q 008089 159 --------TNDEVYYNDLYILNTETFVWKRATTSGNPPSARD-SHTCSSWKNKIIVIGGEDGHDYYLSDVHILDT--DTL 227 (578)
Q Consensus 159 --------~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~-~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~--~t~ 227 (578)
.....+++++++||+.+++|+.+. .+|.+|. .|++++++++||||||........+++++||+ +++
T Consensus 153 ~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~ 229 (357)
T 2uvk_A 153 NAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAG---ESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNL 229 (357)
T ss_dssp HHHHHSSCGGGGCCCCEEEEEETTTTEEEEEE---ECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---C
T ss_pred hhhhccccccccCCcccEEEEeCCCCcEEECC---CCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCC
Confidence 000024689999999999999996 4565554 49999999999999998766567889999987 999
Q ss_pred ceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCC----------------CCccCcEEEEECCCCcEEEEEeCCCCCC
Q 008089 228 TWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS----------------QNLYDDLYMIDVDSGLWTKVITTGEGPS 291 (578)
Q Consensus 228 ~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~----------------~~~~~dv~~ydi~t~~W~~l~~~~~~P~ 291 (578)
+|+.+... ..|..|.+|+++.++++|||+||.... ...++++++||+++++|+.+..+ |.
T Consensus 230 ~W~~~~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~ 305 (357)
T 2uvk_A 230 KWNKLAPV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL---SQ 305 (357)
T ss_dssp EEEECCCS-STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC---SS
T ss_pred cEEecCCC-CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC---CC
Confidence 99999762 123446788899999999999997532 12346899999999999999764 67
Q ss_pred CceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEecccccceeccc
Q 008089 292 ARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEK 340 (578)
Q Consensus 292 ~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~~~~~~~~~l~~ 340 (578)
+|..|+++.+ +++|||+||++.....++|+|.|+....+|.++..
T Consensus 306 ~r~~~~~~~~----~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 306 GRAYGVSLPW----NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp CCBSSEEEEE----TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred CcccceeEEe----CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 8888776543 88999999998877778999999888777765543
No 6
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=4e-39 Score=329.30 Aligned_cols=253 Identities=19% Similarity=0.328 Sum_probs=222.6
Q ss_pred CCCCCCCcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCC
Q 008089 26 SSGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDG 105 (578)
Q Consensus 26 g~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~ 105 (578)
..+|.+|.+|+++++ +++||++||.+... ..+++++||+.+++|..+. ++|.+|.+|+++.++++|||+||.++
T Consensus 46 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~ 119 (302)
T 2xn4_A 46 AELPSRRCRAGMVYM--AGLVFAVGGFNGSL-RVRTVDSYDPVKDQWTSVA---NMRDRRSTLGAAVLNGLLYAVGGFDG 119 (302)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEESCBCSSS-BCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEEEEECS
T ss_pred ccCCcccccceEEEE--CCEEEEEeCcCCCc-cccceEEECCCCCceeeCC---CCCccccceEEEEECCEEEEEcCCCC
Confidence 367889999999988 56899999987553 6789999999999999975 78999999999999999999999988
Q ss_pred CCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCC
Q 008089 106 MNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG 185 (578)
Q Consensus 106 ~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g 185 (578)
...++++++||+.+++|+.+. ++|.+|.+|+++.++++|||+||.... .....+++++||+.+++|+.+.
T Consensus 120 ~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~~yd~~~~~W~~~~--- 189 (302)
T 2xn4_A 120 STGLSSVEAYNIKSNEWFHVA---PMNTRRSSVGVGVVGGLLYAVGGYDVA----SRQCLSTVECYNATTNEWTYIA--- 189 (302)
T ss_dssp SCEEEEEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEETT----TTEECCCEEEEETTTTEEEEEC---
T ss_pred CccCceEEEEeCCCCeEeecC---CCCCcccCceEEEECCEEEEEeCCCCC----CCccccEEEEEeCCCCcEEECC---
Confidence 777899999999999999876 789999999999999999999997422 2346789999999999999996
Q ss_pred CCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCC
Q 008089 186 NPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQN 265 (578)
Q Consensus 186 ~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~ 265 (578)
.+|.+|..|++++++++|||+||.++.. ..+++++||+++++|+.+.. +|.+|.+|+++.++++|||+||.+.. .
T Consensus 190 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~i~v~GG~~~~-~ 264 (302)
T 2xn4_A 190 EMSTRRSGAGVGVLNNLLYAVGGHDGPL-VRKSVEVYDPTTNAWRQVAD---MNMCRRNAGVCAVNGLLYVVGGDDGS-C 264 (302)
T ss_dssp CCSSCCBSCEEEEETTEEEEECCBSSSS-BCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCBCSS-S
T ss_pred CCccccccccEEEECCEEEEECCCCCCc-ccceEEEEeCCCCCEeeCCC---CCCccccCeEEEECCEEEEECCcCCC-c
Confidence 5788999999999999999999987653 67899999999999999986 88999999999999999999998653 4
Q ss_pred ccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeee
Q 008089 266 LYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCL 301 (578)
Q Consensus 266 ~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~ 301 (578)
.++++++||+++++|+.+.. ..|.+|..|+++++
T Consensus 265 ~~~~v~~yd~~~~~W~~~~~--~~~~~r~~~~~~~~ 298 (302)
T 2xn4_A 265 NLASVEYYNPTTDKWTVVSS--CMSTGRSYAGVTVI 298 (302)
T ss_dssp BCCCEEEEETTTTEEEECSS--CCSSCCBSCEEEEE
T ss_pred ccccEEEEcCCCCeEEECCc--ccCcccccceEEEe
Confidence 57899999999999999852 35778888876554
No 7
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=4.8e-39 Score=329.31 Aligned_cols=252 Identities=20% Similarity=0.364 Sum_probs=221.8
Q ss_pred CCCCCCcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccC-C
Q 008089 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTD-G 105 (578)
Q Consensus 27 ~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~-~ 105 (578)
.+|.+|.+|+++++ +++||+|||.+ ....+++++||+.+++|..+. ++|.+|.+|+++.++++|||+||.+ +
T Consensus 41 ~~p~~r~~~~~~~~--~~~lyv~GG~~--~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~ 113 (306)
T 3ii7_A 41 CPFEKRRDAACVFW--DNVVYILGGSQ--LFPIKRMDCYNVVKDSWYSKL---GPPTPRDSLAACAAEGKIYTSGGSEVG 113 (306)
T ss_dssp CCSCCCBSCEEEEE--TTEEEEECCBS--SSBCCEEEEEETTTTEEEEEE---CCSSCCBSCEEEEETTEEEEECCBBTT
T ss_pred CCCcccceeEEEEE--CCEEEEEeCCC--CCCcceEEEEeCCCCeEEECC---CCCccccceeEEEECCEEEEECCCCCC
Confidence 67889999999998 56899999987 446789999999999999975 7899999999999999999999997 5
Q ss_pred CCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCC
Q 008089 106 MNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG 185 (578)
Q Consensus 106 ~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g 185 (578)
...++++++||+.+++|+.+. ++|.+|.+|+++.++++|||+||..... ......+++++||+.+++|+.+.
T Consensus 114 ~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~~~yd~~~~~W~~~~--- 185 (306)
T 3ii7_A 114 NSALYLFECYDTRTESWHTKP---SMLTQRCSHGMVEANGLIYVCGGSLGNN--VSGRVLNSCEVYDPATETWTELC--- 185 (306)
T ss_dssp BSCCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEESCT--TTCEECCCEEEEETTTTEEEEEC---
T ss_pred CcEeeeEEEEeCCCCceEeCC---CCcCCcceeEEEEECCEEEEECCCCCCC--CcccccceEEEeCCCCCeEEECC---
Confidence 668899999999999999875 7899999999999999999999974321 12245899999999999999997
Q ss_pred CCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCC
Q 008089 186 NPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQN 265 (578)
Q Consensus 186 ~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~ 265 (578)
.+|.+|..|++++++++|||+||.+.. ..++++++||+++++|+.+.. +|.+|.+|+++.++++|||+||.+.. .
T Consensus 186 ~~p~~r~~~~~~~~~~~i~v~GG~~~~-~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~-~ 260 (306)
T 3ii7_A 186 PMIEARKNHGLVFVKDKIFAVGGQNGL-GGLDNVEYYDIKLNEWKMVSP---MPWKGVTVKCAAVGSIVYVLAGFQGV-G 260 (306)
T ss_dssp CCSSCCBSCEEEEETTEEEEECCEETT-EEBCCEEEEETTTTEEEECCC---CSCCBSCCEEEEETTEEEEEECBCSS-S
T ss_pred CccchhhcceEEEECCEEEEEeCCCCC-CCCceEEEeeCCCCcEEECCC---CCCCccceeEEEECCEEEEEeCcCCC-e
Confidence 578899999999999999999998765 368899999999999999976 88999999999999999999998653 4
Q ss_pred ccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeee
Q 008089 266 LYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCL 301 (578)
Q Consensus 266 ~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~ 301 (578)
.++++++||+++++|+.+..+ |.+|..++++++
T Consensus 261 ~~~~~~~yd~~~~~W~~~~~~---~~~r~~~~~~~~ 293 (306)
T 3ii7_A 261 RLGHILEYNTETDKWVANSKV---RAFPVTSCLICV 293 (306)
T ss_dssp BCCEEEEEETTTTEEEEEEEE---ECCSCTTCEEEE
T ss_pred eeeeEEEEcCCCCeEEeCCCc---ccccceeEEEEE
Confidence 678999999999999999765 567777775554
No 8
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=3.6e-39 Score=331.28 Aligned_cols=250 Identities=21% Similarity=0.377 Sum_probs=220.7
Q ss_pred CCCCCCCcceEEEEEcCCCEEEEEcCCC---CCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcc
Q 008089 26 SSGPGKRWGHTCNAIKGGRFLYVFGGYG---KDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGG 102 (578)
Q Consensus 26 g~~P~~R~ghs~v~v~~g~~Iyv~GG~~---~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG 102 (578)
..+|.+|.+|+++++ +++||+|||.. ......+++++||+.+++|.++. ++|.+|.+|+++.++++|||+||
T Consensus 55 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG 129 (308)
T 1zgk_A 55 ADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA---PMSVPRNRIGVGVIDGHIYAVGG 129 (308)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECC---CCSSCCBTCEEEEETTEEEEECC
T ss_pred CCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECC---CCCcCccccEEEEECCEEEEEcC
Confidence 367889999999988 56899999983 22336788999999999999965 78999999999999999999999
Q ss_pred cCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEec
Q 008089 103 TDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT 182 (578)
Q Consensus 103 ~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~ 182 (578)
.++...++++++||+.+++|+.+. ++|.+|.+|++++++++||||||.... ...+++++||+.+++|+.+.
T Consensus 130 ~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~------~~~~~~~~yd~~~~~W~~~~ 200 (308)
T 1zgk_A 130 SHGCIHHNSVERYEPERDEWHLVA---PMLTRRIGVGVAVLNRLLYAVGGFDGT------NRLNSAECYYPERNEWRMIT 200 (308)
T ss_dssp EETTEECCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSS------CBCCCEEEEETTTTEEEECC
T ss_pred CCCCcccccEEEECCCCCeEeECC---CCCccccceEEEEECCEEEEEeCCCCC------CcCceEEEEeCCCCeEeeCC
Confidence 988778899999999999999876 689999999999999999999996422 23789999999999999986
Q ss_pred cCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccC
Q 008089 183 TSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTD 262 (578)
Q Consensus 183 ~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~ 262 (578)
.+|.+|..|++++++++|||+||.+... .++++++||+++++|+.+.. +|.+|..|+++.++++|||+||.+.
T Consensus 201 ---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 201 ---AMNTIRSGAGVCVLHNCIYAAGGYDGQD-QLNSVERYDVETETWTFVAP---MKHRRSALGITVHQGRIYVLGGYDG 273 (308)
T ss_dssp ---CCSSCCBSCEEEEETTEEEEECCBCSSS-BCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEECCBCS
T ss_pred ---CCCCccccceEEEECCEEEEEeCCCCCC-ccceEEEEeCCCCcEEECCC---CCCCccceEEEEECCEEEEEcCcCC
Confidence 5788999999999999999999988654 68999999999999999986 8899999999999999999999865
Q ss_pred CCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEee
Q 008089 263 SQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDC 300 (578)
Q Consensus 263 ~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~ 300 (578)
...++++++||+++++|+.+..+ |.+|+.+++++
T Consensus 274 -~~~~~~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~ 307 (308)
T 1zgk_A 274 -HTFLDSVECYDPDTDTWSEVTRM---TSGRSGVGVAV 307 (308)
T ss_dssp -SCBCCEEEEEETTTTEEEEEEEC---SSCCBSCEEEE
T ss_pred -CcccceEEEEcCCCCEEeecCCC---CCCcccceeEe
Confidence 44678999999999999999764 77888887543
No 9
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=323.90 Aligned_cols=249 Identities=22% Similarity=0.355 Sum_probs=221.1
Q ss_pred CCCCCCcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCc---EEEeeecCCCCCCCcceeEEEECCEEEEEccc
Q 008089 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQT---WSQPVIKGSPPTPRDSHSCTTVGENLYVFGGT 103 (578)
Q Consensus 27 ~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~---W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~ 103 (578)
.+|.+|.+|+++++ +++||+|||.... ...+++++||+.+++ |+.+. ++|.+|.+|+++.++++||++||.
T Consensus 48 ~~p~~r~~~~~~~~--~~~l~v~GG~~~~-~~~~~~~~~d~~~~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~ 121 (301)
T 2vpj_A 48 SITRKRRYVASVSL--HDRIYVIGGYDGR-SRLSSVECLDYTADEDGVWYSVA---PMNVRRGLAGATTLGDMIYVSGGF 121 (301)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCBCSS-CBCCCEEEEETTCCTTCCCEEEC---CCSSCCBSCEEEEETTEEEEECCB
T ss_pred CCChhhccccEEEE--CCEEEEEcCCCCC-ccCceEEEEECCCCCCCeeEECC---CCCCCccceeEEEECCEEEEEccc
Confidence 57889999999998 5689999998743 367899999999999 99964 789999999999999999999999
Q ss_pred CCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEecc
Q 008089 104 DGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATT 183 (578)
Q Consensus 104 ~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~ 183 (578)
++...++++++||+.+++|+.+. ++|.+|.+|++++++++||++||+.. ....+++++||+.+++|+.+.
T Consensus 122 ~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~------~~~~~~~~~~d~~~~~W~~~~- 191 (301)
T 2vpj_A 122 DGSRRHTSMERYDPNIDQWSMLG---DMQTAREGAGLVVASGVIYCLGGYDG------LNILNSVEKYDPHTGHWTNVT- 191 (301)
T ss_dssp CSSCBCCEEEEEETTTTEEEEEE---ECSSCCBSCEEEEETTEEEEECCBCS------SCBCCCEEEEETTTTEEEEEC-
T ss_pred CCCcccceEEEEcCCCCeEEECC---CCCCCcccceEEEECCEEEEECCCCC------CcccceEEEEeCCCCcEEeCC-
Confidence 88777899999999999999876 67899999999999999999999642 236789999999999999996
Q ss_pred CCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCC
Q 008089 184 SGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS 263 (578)
Q Consensus 184 ~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~ 263 (578)
.+|.+|..|++++++++|||+||.+... .++++++||+++++|+.+.. +|.+|..|+++.++++|||+||....
T Consensus 192 --~~p~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~ 265 (301)
T 2vpj_A 192 --PMATKRSGAGVALLNDHIYVVGGFDGTA-HLSSVEAYNIRTDSWTTVTS---MTTPRCYVGATVLRGRLYAIAGYDGN 265 (301)
T ss_dssp --CCSSCCBSCEEEEETTEEEEECCBCSSS-BCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred --CCCcccccceEEEECCEEEEEeCCCCCc-ccceEEEEeCCCCcEEECCC---CCCcccceeEEEECCEEEEEcCcCCC
Confidence 6788999999999999999999987654 58899999999999999976 88999999999999999999998654
Q ss_pred CCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeee
Q 008089 264 QNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCL 301 (578)
Q Consensus 264 ~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~ 301 (578)
..++++++||+++++|+.+..+ |.+|+.|+++++
T Consensus 266 -~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~ 299 (301)
T 2vpj_A 266 -SLLSSIECYDPIIDSWEVVTSM---GTQRCDAGVCVL 299 (301)
T ss_dssp -SBEEEEEEEETTTTEEEEEEEE---EEEEESCEEEEE
T ss_pred -cccccEEEEcCCCCeEEEcCCC---CcccccceEEEe
Confidence 3578999999999999999764 678888876654
No 10
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=3.1e-39 Score=332.61 Aligned_cols=259 Identities=20% Similarity=0.321 Sum_probs=221.3
Q ss_pred CCCCCCcceEEEEEcCCCEEEEEcCCC-----CCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEc
Q 008089 27 SGPGKRWGHTCNAIKGGRFLYVFGGYG-----KDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFG 101 (578)
Q Consensus 27 ~~P~~R~ghs~v~v~~g~~Iyv~GG~~-----~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~G 101 (578)
..|.+|.+|+++++ +++||++||.. ......+++++||+.+++|+.+. ++|.+|.+|+++.++++|||+|
T Consensus 31 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~G 105 (315)
T 4asc_A 31 SSQVPKNHVSLVTK--ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP---PLPSPRCLFGLGEALNSIYVVG 105 (315)
T ss_dssp CCCSCSSEEEEECT--TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC---CBSSCEESCEEEEETTEEEEEC
T ss_pred CCCCCccceEEEEE--CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC---CCCcchhceeEEEECCEEEEEe
Confidence 44779999998877 55799999962 22234466999999999999864 7899999999999999999999
Q ss_pred ccC---CCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceE
Q 008089 102 GTD---GMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW 178 (578)
Q Consensus 102 G~~---~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W 178 (578)
|.+ +...++++++||+.+++|+.+. ++|.+|.+|+++.++++||||||.. ......+++++||+.+++|
T Consensus 106 G~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~-----~~~~~~~~~~~yd~~~~~W 177 (315)
T 4asc_A 106 GREIKDGERCLDSVMCYDRLSFKWGESD---PLPYVVYGHTVLSHMDLVYVIGGKG-----SDRKCLNKMCVYDPKKFEW 177 (315)
T ss_dssp CEESSTTCCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBC-----TTSCBCCCEEEEETTTTEE
T ss_pred CCcCCCCCcccceEEEECCCCCcEeECC---CCCCcccceeEEEECCEEEEEeCCC-----CCCcccceEEEEeCCCCeE
Confidence 975 3567899999999999999876 6899999999999999999999963 2335689999999999999
Q ss_pred EEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEc
Q 008089 179 KRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFG 258 (578)
Q Consensus 179 ~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~G 258 (578)
+.+. ++|.+|..|++++++++|||+||.+... .++++++||+++++|+.+.. +|.+|.+|+++.++++|||+|
T Consensus 178 ~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~l~v~G 250 (315)
T 4asc_A 178 KELA---PMQTARSLFGATVHDGRIIVAAGVTDTG-LTSSAEVYSITDNKWAPFEA---FPQERSSLSLVSLVGTLYAIG 250 (315)
T ss_dssp EECC---CCSSCCBSCEEEEETTEEEEEEEECSSS-EEEEEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEEE
T ss_pred EECC---CCCCchhceEEEEECCEEEEEeccCCCC-ccceEEEEECCCCeEEECCC---CCCcccceeEEEECCEEEEEC
Confidence 9987 5788999999999999999999987664 68899999999999999976 899999999999999999999
Q ss_pred CccCC----C----CccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEcc
Q 008089 259 GFTDS----Q----NLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGG 314 (578)
Q Consensus 259 G~~~~----~----~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG 314 (578)
|.+.. . ..++++|+||+++++|+.+ .|.+|..++++++ +++|||+..
T Consensus 251 G~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~-----~~~~r~~~~~~~~----~~~l~v~~~ 305 (315)
T 4asc_A 251 GFATLETESGELVPTELNDIWRYNEEEKKWEGV-----LREIAYAAGATFL----PVRLNVLRL 305 (315)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE-----ESCSSCCSSCEEE----EEEECGGGS
T ss_pred CccccCcCCccccccccCcEEEecCCCChhhhh-----ccCCcCccceEEe----CCEEEEEEe
Confidence 98531 1 3468999999999999999 3556777776554 678888754
No 11
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=1.2e-38 Score=328.74 Aligned_cols=258 Identities=21% Similarity=0.341 Sum_probs=219.8
Q ss_pred CCCCCCcceEEEEEcCCCEEEEEcCCCCC-----CCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEc
Q 008089 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKD-----NCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFG 101 (578)
Q Consensus 27 ~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~-----~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~G 101 (578)
..|.+|.+|+++++ +++||+|||...+ ....+++++||+.+++|..+. ++|.+|.+|+++.++++|||+|
T Consensus 42 ~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~G 116 (318)
T 2woz_A 42 AEQIPRNHSSIVTQ--QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP---PLPSARCLFGLGEVDDKIYVVA 116 (318)
T ss_dssp CTTSCSSEEEEECS--SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS---CBSSCBCSCEEEEETTEEEEEE
T ss_pred CccCCccceEEEEE--CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC---CCCccccccceEEECCEEEEEc
Confidence 45678999988776 5579999996321 122345999999999999964 8899999999999999999999
Q ss_pred ccC--CCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEE
Q 008089 102 GTD--GMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK 179 (578)
Q Consensus 102 G~~--~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~ 179 (578)
|.+ +...++++++||+.+++|+.+. ++|.+|.+|++++++++||||||... .....+++++||+.+++|+
T Consensus 117 G~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~-----~~~~~~~~~~yd~~~~~W~ 188 (318)
T 2woz_A 117 GKDLQTEASLDSVLCYDPVAAKWSEVK---NLPIKVYGHNVISHNGMIYCLGGKTD-----DKKCTNRVFIYNPKKGDWK 188 (318)
T ss_dssp EEBTTTCCEEEEEEEEETTTTEEEEEC---CCSSCEESCEEEEETTEEEEECCEES-----SSCBCCCEEEEETTTTEEE
T ss_pred CccCCCCcccceEEEEeCCCCCEeECC---CCCCcccccEEEEECCEEEEEcCCCC-----CCCccceEEEEcCCCCEEE
Confidence 986 4456789999999999999876 78999999999999999999999632 2345789999999999999
Q ss_pred EeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcC
Q 008089 180 RATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGG 259 (578)
Q Consensus 180 ~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG 259 (578)
.+. .+|.+|..|++++++++|||+||.+... .++++++||+++++|+.+.. +|.+|.+|+++.++++|||+||
T Consensus 189 ~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG 261 (318)
T 2woz_A 189 DLA---PMKTPRSMFGVAIHKGKIVIAGGVTEDG-LSASVEAFDLKTNKWEVMTE---FPQERSSISLVSLAGSLYAIGG 261 (318)
T ss_dssp EEC---CCSSCCBSCEEEEETTEEEEEEEEETTE-EEEEEEEEETTTCCEEECCC---CSSCCBSCEEEEETTEEEEECC
T ss_pred ECC---CCCCCcccceEEEECCEEEEEcCcCCCC-ccceEEEEECCCCeEEECCC---CCCcccceEEEEECCEEEEECC
Confidence 997 5789999999999999999999987654 67899999999999999976 8899999999999999999999
Q ss_pred ccCC--------CCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEc
Q 008089 260 FTDS--------QNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIG 313 (578)
Q Consensus 260 ~~~~--------~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~G 313 (578)
.... ....+++|+||+++++|+.+ .|.+|+.|++.++ +++|||+.
T Consensus 262 ~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~-----~~~~r~~~~~~~~----~~~iyi~~ 314 (318)
T 2woz_A 262 FAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM-----LKEIRYASGASCL----ATRLNLFK 314 (318)
T ss_dssp BCCBC----CCBCCBCCCEEEEETTTTEEEEE-----ESCCGGGTTCEEE----EEEEEGGG
T ss_pred eeccCCCCceeccceeeeEEEEeCCCCEehhh-----cccccccccceee----CCEEEEEE
Confidence 8642 13478999999999999998 3677888876665 67888763
No 12
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=3.6e-38 Score=324.61 Aligned_cols=265 Identities=18% Similarity=0.282 Sum_probs=225.5
Q ss_pred CEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccC----CC--CCCCcEEEEEC
Q 008089 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTD----GM--NPLRDLHILDT 117 (578)
Q Consensus 44 ~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~----~~--~~~~~v~~yD~ 117 (578)
+.||++|| +++++||+.+++|... ..+.|.+|.+|+++.++++|||+||.. .. ...+++++||+
T Consensus 5 ~~l~~~GG--------~~~~~yd~~~~~W~~~--~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~ 74 (315)
T 4asc_A 5 DLIFMISE--------EGAVAYDPAANECYCA--SLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDH 74 (315)
T ss_dssp EEEEEEET--------TEEEEEETTTTEEEEE--ECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEET
T ss_pred eEEEEEcC--------CceEEECCCCCeEecC--CCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecC
Confidence 36999999 5799999999999873 234477899999999999999999962 21 23456999999
Q ss_pred CCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEE
Q 008089 118 SSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCS 197 (578)
Q Consensus 118 ~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~ 197 (578)
.+++|+.++ ++|.+|.+|+++.++++||||||.... ......+++++||+.+++|+.+. ++|.+|..|+++
T Consensus 75 ~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~---~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~ 145 (315)
T 4asc_A 75 LDSEWLGMP---PLPSPRCLFGLGEALNSIYVVGGREIK---DGERCLDSVMCYDRLSFKWGESD---PLPYVVYGHTVL 145 (315)
T ss_dssp TTTEEEECC---CBSSCEESCEEEEETTEEEEECCEESS---TTCCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEE
T ss_pred CCCeEEECC---CCCcchhceeEEEECCEEEEEeCCcCC---CCCcccceEEEECCCCCcEeECC---CCCCcccceeEE
Confidence 999998875 789999999999999999999996421 22456899999999999999987 578899999999
Q ss_pred EeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCC
Q 008089 198 SWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (578)
Q Consensus 198 ~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t 277 (578)
+++++|||+||.......++++++||+.+++|+.+.. +|.+|..|+++.++++|||+||.... ..++++++||+++
T Consensus 146 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~ 221 (315)
T 4asc_A 146 SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAP---MQTARSLFGATVHDGRIIVAAGVTDT-GLTSSAEVYSITD 221 (315)
T ss_dssp EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEEEEECSS-SEEEEEEEEETTT
T ss_pred EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCC---CCCchhceEEEEECCEEEEEeccCCC-CccceEEEEECCC
Confidence 9999999999996666689999999999999999986 88999999999999999999998654 3578999999999
Q ss_pred CcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCC----C----CccCcEEEEecccccceec
Q 008089 278 GLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS----L----EALDDMYYLYTGLVNERKL 338 (578)
Q Consensus 278 ~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~----~----~~~~d~~~l~~~~~~~~~l 338 (578)
++|+.+.. .|.+|..++++.+ +++|||+||.+.. . ..++++|.++.....|..+
T Consensus 222 ~~W~~~~~---~p~~r~~~~~~~~----~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 222 NKWAPFEA---FPQERSSLSLVSL----VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp TEEEEECC---CSSCCBSCEEEEE----TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred CeEEECCC---CCCcccceeEEEE----CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 99999965 5778888876654 7899999998642 1 3578999999988888665
No 13
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=1.7e-37 Score=320.07 Aligned_cols=273 Identities=19% Similarity=0.296 Sum_probs=228.9
Q ss_pred CCCcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccC--CC-
Q 008089 30 GKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTD--GM- 106 (578)
Q Consensus 30 ~~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~--~~- 106 (578)
.+|.++... +.||+|||. .+++||+.+++|.... .+.|.+|.+|+++.++++|||+||.. ..
T Consensus 7 ~~r~~~~~~-----~~i~~~GG~--------~~~~yd~~~~~W~~~~--~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~ 71 (318)
T 2woz_A 7 IPRHGMFVK-----DLILLVNDT--------AAVAYDPMENECYLTA--LAEQIPRNHSSIVTQQNQVYVVGGLYVDEEN 71 (318)
T ss_dssp SCCCCCSEE-----EEEEEECSS--------EEEEEETTTTEEEEEE--ECTTSCSSEEEEECSSSCEEEEESSCC----
T ss_pred cccccceec-----chhhhcccc--------ceEEECCCCCceeccc--CCccCCccceEEEEECCEEEEECCcccCccc
Confidence 466665432 369999993 4899999999999843 24467899999999999999999963 11
Q ss_pred ---CCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEecc
Q 008089 107 ---NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATT 183 (578)
Q Consensus 107 ---~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~ 183 (578)
...+++++||+.+++|++++ ++|.+|.+|+++.++++|||+||... ......+++++||+.+++|+.+.
T Consensus 72 ~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~----~~~~~~~~~~~yd~~~~~W~~~~- 143 (318)
T 2woz_A 72 KDQPLQSYFFQLDNVSSEWVGLP---PLPSARCLFGLGEVDDKIYVVAGKDL----QTEASLDSVLCYDPVAAKWSEVK- 143 (318)
T ss_dssp ---CCCBEEEEEETTTTEEEECS---CBSSCBCSCEEEEETTEEEEEEEEBT----TTCCEEEEEEEEETTTTEEEEEC-
T ss_pred cCCCccccEEEEeCCCCcEEECC---CCCccccccceEEECCEEEEEcCccC----CCCcccceEEEEeCCCCCEeECC-
Confidence 12346999999999999875 78999999999999999999999642 23456899999999999999997
Q ss_pred CCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCC
Q 008089 184 SGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS 263 (578)
Q Consensus 184 ~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~ 263 (578)
.+|.+|..|++++++++|||+||.......++++++||+.+++|+.+.. +|.+|..|+++.++++|||+||....
T Consensus 144 --~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~ 218 (318)
T 2woz_A 144 --NLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAP---MKTPRSMFGVAIHKGKIVIAGGVTED 218 (318)
T ss_dssp --CCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEEEEEETT
T ss_pred --CCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCC---CCCCcccceEEEECCEEEEEcCcCCC
Confidence 6788999999999999999999986666678999999999999999976 88999999999999999999998754
Q ss_pred CCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCC--------CCccCcEEEEecccccc
Q 008089 264 QNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS--------LEALDDMYYLYTGLVNE 335 (578)
Q Consensus 264 ~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~--------~~~~~d~~~l~~~~~~~ 335 (578)
..++++++||+++++|+.+.. .|.+|..|+++.+ +++|||+||.+.. ...++++|.++.....|
T Consensus 219 -~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 290 (318)
T 2woz_A 219 -GLSASVEAFDLKTNKWEVMTE---FPQERSSISLVSL----AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW 290 (318)
T ss_dssp -EEEEEEEEEETTTCCEEECCC---CSSCCBSCEEEEE----TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEE
T ss_pred -CccceEEEEECCCCeEEECCC---CCCcccceEEEEE----CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEe
Confidence 357899999999999999854 4778888876554 7899999998753 13578999999998888
Q ss_pred eec
Q 008089 336 RKL 338 (578)
Q Consensus 336 ~~l 338 (578)
..+
T Consensus 291 ~~~ 293 (318)
T 2woz_A 291 AGM 293 (318)
T ss_dssp EEE
T ss_pred hhh
Confidence 766
No 14
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=9.9e-37 Score=347.71 Aligned_cols=283 Identities=17% Similarity=0.187 Sum_probs=229.1
Q ss_pred CCCCCCcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEee-e--cCCCCCCCcceeEEEE--CCEEEEEc
Q 008089 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPV-I--KGSPPTPRDSHSCTTV--GENLYVFG 101 (578)
Q Consensus 27 ~~P~~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~-~--~g~~P~~R~~hs~~~~--~~kIYv~G 101 (578)
..|.+|++|+++ + +++||||||.+. ...+++++||+.+++|..+. . .+.+|.+|.+|+++++ +++|||+|
T Consensus 384 ~~p~rr~g~~~~-~--~~~iyv~GG~~~--~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~G 458 (695)
T 2zwa_A 384 CPINRKFGDVDV-A--GNDVFYMGGSNP--YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIG 458 (695)
T ss_dssp CTTCCBSCEEEE-C--SSCEEEECCBSS--SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEEC
T ss_pred CCCCCceeEEEE-E--CCEEEEECCCCC--CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEc
Confidence 456678777655 4 457999999876 47789999999999999986 2 3568999999999999 99999999
Q ss_pred ccCCCC-CCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEE
Q 008089 102 GTDGMN-PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK 179 (578)
Q Consensus 102 G~~~~~-~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~ 179 (578)
|.+... .++++|+||+.+++|+.+. ++|.+|.+|+++++ +++||||||+... . ++++||+.+++|+
T Consensus 459 G~~~~~~~~~dv~~yd~~t~~W~~~~---~~p~~R~~h~~~~~~~~~iyv~GG~~~~------~---~v~~yd~~t~~W~ 526 (695)
T 2zwa_A 459 GRKAPHQGLSDNWIFDMKTREWSMIK---SLSHTRFRHSACSLPDGNVLILGGVTEG------P---AMLLYNVTEEIFK 526 (695)
T ss_dssp CBSSTTCBCCCCEEEETTTTEEEECC---CCSBCCBSCEEEECTTSCEEEECCBCSS------C---SEEEEETTTTEEE
T ss_pred CCCCCCCccccEEEEeCCCCcEEECC---CCCCCcccceEEEEcCCEEEEECCCCCC------C---CEEEEECCCCceE
Confidence 997755 7899999999999999875 78999999999997 9999999996432 1 8999999999999
Q ss_pred EeccCCCCCCCCCceeEEEeC---CEEEEEecCCCCC-cccCceEEEECCCCc------eEEecCCCCCCCCCceeEEEE
Q 008089 180 RATTSGNPPSARDSHTCSSWK---NKIIVIGGEDGHD-YYLSDVHILDTDTLT------WKELNTSGMVLSPRAGHSTVA 249 (578)
Q Consensus 180 ~~~~~g~~p~~R~~h~~~~~~---~~lyV~GG~~~~~-~~~~di~~yD~~t~~------W~~v~~~g~~p~~R~~hs~v~ 249 (578)
.+...+.+|.+|..|++++++ ++||||||..... ..++++++||+.+++ |+.+.. .++.+|.+|+++.
T Consensus 527 ~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~--~p~~~R~~~~~~~ 604 (695)
T 2zwa_A 527 DVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ--HPLFQRYGSQIKY 604 (695)
T ss_dssp ECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE--CGGGCCBSCEEEE
T ss_pred EccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC--CCCCCcccceEEE
Confidence 998877789999999988876 8999999986543 578999999999999 888876 1358999999999
Q ss_pred eC-CEEEEEcCccCCC--CccCcEEEEECCCCcEEEEEeCCC----CCCCceeeeEeeeeccCCCEEEEEcccc---CCC
Q 008089 250 FG-KNLFVFGGFTDSQ--NLYDDLYMIDVDSGLWTKVITTGE----GPSARFSVAGDCLDPLKGGVLVFIGGCN---KSL 319 (578)
Q Consensus 250 ~~-~~iyV~GG~~~~~--~~~~dv~~ydi~t~~W~~l~~~~~----~P~~r~~~~~~~~~~~~~~~l~v~GG~~---~~~ 319 (578)
++ ++|||+||.+... ...+++++||+.+++|+.+..... .+..+.+|+++. ..+++|||+||.. ..+
T Consensus 605 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~---~~~g~i~v~GGg~~cfsfG 681 (695)
T 2zwa_A 605 ITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVS---TSMGTIHIIGGGATCYGFG 681 (695)
T ss_dssp EETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECCCCHHHHHHSCCCCSSCEEEC---C---CEEEECCEEECTTSC
T ss_pred eCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEeeccccccCCCCccceeeeEEE---eCCCEEEEEeCCccCcCcc
Confidence 99 9999999986543 368999999999999995432211 112455565443 3455899999964 234
Q ss_pred CccCcEEEEecc
Q 008089 320 EALDDMYYLYTG 331 (578)
Q Consensus 320 ~~~~d~~~l~~~ 331 (578)
..++++|.|+..
T Consensus 682 t~~n~i~~ldl~ 693 (695)
T 2zwa_A 682 SVTNVGLKLIAI 693 (695)
T ss_dssp EEECCCEEEEEC
T ss_pred ccccceEEEEEE
Confidence 557799998754
No 15
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=3.8e-35 Score=306.84 Aligned_cols=244 Identities=20% Similarity=0.274 Sum_probs=196.5
Q ss_pred CCC-CCCcceEEEEEcCCCEEEEEcCC-C---CCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEc
Q 008089 27 SGP-GKRWGHTCNAIKGGRFLYVFGGY-G---KDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFG 101 (578)
Q Consensus 27 ~~P-~~R~ghs~v~v~~g~~Iyv~GG~-~---~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~G 101 (578)
.+| .+|.+|+++++ +++||||||. . ......+++++||+.+++|+++...+ |.+|.+|++++++++|||+|
T Consensus 50 ~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--p~~r~~~~~~~~~~~iyv~G 125 (357)
T 2uvk_A 50 AFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA--PMGMAGHVTFVHNGKAYVTG 125 (357)
T ss_dssp CCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC--SSCCSSEEEEEETTEEEEEE
T ss_pred CCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC--CcccccceEEEECCEEEEEe
Confidence 467 79999999999 5689999998 2 12345789999999999999976322 58999999999999999999
Q ss_pred ccCCC----------------------------------CCCCcEEEEECCCCeEEecccCCCCCCCCc-ccEEEEECCE
Q 008089 102 GTDGM----------------------------------NPLRDLHILDTSSHTWISPSVRGEGPEARE-GHSAALVGKR 146 (578)
Q Consensus 102 G~~~~----------------------------------~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~-~hs~~~~~~~ 146 (578)
|.++. ..++++++||+.+++|+.+. ++|.+|. +|++++++++
T Consensus 126 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~~~~~~~~~~~~~~ 202 (357)
T 2uvk_A 126 GVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAG---ESPWYGTAGAAVVNKGDK 202 (357)
T ss_dssp CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEE---ECSSCCCBSCEEEEETTE
T ss_pred CcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECC---CCCCCCcccccEEEECCE
Confidence 98643 25689999999999999875 5676554 5999999999
Q ss_pred EEEEccCCCCCCCCCceeeceEEEEEc--CcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCC------------
Q 008089 147 LFIFGGCGKSSNTNDEVYYNDLYILNT--ETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGH------------ 212 (578)
Q Consensus 147 lyvfGG~~~~~~~~~~~~~ndv~~yd~--~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~------------ 212 (578)
||||||.... ....+++++||+ .+++|+.+... +.|..|..|++++++++|||+||.+..
T Consensus 203 iyv~GG~~~~-----~~~~~~v~~~d~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~ 276 (357)
T 2uvk_A 203 TWLINGEAKP-----GLRTDAVFELDFTGNNLKWNKLAPV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNY 276 (357)
T ss_dssp EEEECCEEET-----TEECCCEEEEECC---CEEEECCCS-STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSS
T ss_pred EEEEeeecCC-----CcccCceEEEEecCCCCcEEecCCC-CCCcccccceEEEECCEEEEEcCccccCCccccccccee
Confidence 9999996422 245788999987 89999999754 345567788899999999999996432
Q ss_pred ----CcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeC
Q 008089 213 ----DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITT 286 (578)
Q Consensus 213 ----~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~ 286 (578)
...++++++||+++++|+.+.. +|.+|.+|+++.++++||||||.+.....++++++|++++++|..+.+.
T Consensus 277 ~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 277 AHEGLKKSYSTDIHLWHNGKWDKSGE---LSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp TTTTCCCEECCEEEECC---CEEEEE---CSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred ccccccceeeEEEEecCCCceeeCCC---CCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 1234689999999999999976 8999999999999999999999987666789999999999999998653
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.97 E-value=2.1e-30 Score=295.57 Aligned_cols=240 Identities=15% Similarity=0.230 Sum_probs=203.9
Q ss_pred CCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEecc-c--CCCCCCCCcccEEEEE--CCEEEEEccC
Q 008089 79 GSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPS-V--RGEGPEAREGHSAALV--GKRLFIFGGC 153 (578)
Q Consensus 79 g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~-~--~g~~P~~R~~hs~~~~--~~~lyvfGG~ 153 (578)
+..|..|.+|+++ ++++|||+||.++ ..++++|+||+.+++|+.+. . .+.+|.+|.+|+++++ +++||||||+
T Consensus 383 ~~~p~rr~g~~~~-~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~ 460 (695)
T 2zwa_A 383 ECPINRKFGDVDV-AGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGR 460 (695)
T ss_dssp CCTTCCBSCEEEE-CSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCB
T ss_pred CCCCCCceeEEEE-ECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCC
Confidence 4566667766554 8999999999987 78899999999999999887 2 2568999999999999 9999999997
Q ss_pred CCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEe-CCEEEEEecCCCCCcccCceEEEECCCCceEEe
Q 008089 154 GKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL 232 (578)
Q Consensus 154 ~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v 232 (578)
... ...++++|+||+.+++|+.+. .+|.+|..|+++++ +++||||||.+... ++++||+.+++|+.+
T Consensus 461 ~~~-----~~~~~dv~~yd~~t~~W~~~~---~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~ 528 (695)
T 2zwa_A 461 KAP-----HQGLSDNWIFDMKTREWSMIK---SLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDV 528 (695)
T ss_dssp SST-----TCBCCCCEEEETTTTEEEECC---CCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEEC
T ss_pred CCC-----CCccccEEEEeCCCCcEEECC---CCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEc
Confidence 432 226789999999999999996 67899999999996 99999999987654 899999999999999
Q ss_pred cCCCCCCCCCceeEEEEeC---CEEEEEcCccCCC-CccCcEEEEECCCCc------EEEEEeCCCCCCCceeeeEeeee
Q 008089 233 NTSGMVLSPRAGHSTVAFG---KNLFVFGGFTDSQ-NLYDDLYMIDVDSGL------WTKVITTGEGPSARFSVAGDCLD 302 (578)
Q Consensus 233 ~~~g~~p~~R~~hs~v~~~---~~iyV~GG~~~~~-~~~~dv~~ydi~t~~------W~~l~~~~~~P~~r~~~~~~~~~ 302 (578)
...+.+|.+|.+|++++++ ++|||+||..... ..++++|+||+.++. |+.+..+ ++.+|+.|+++.+
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~--p~~~R~~~~~~~~- 605 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH--PLFQRYGSQIKYI- 605 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC--GGGCCBSCEEEEE-
T ss_pred cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC--CCCCcccceEEEe-
Confidence 9877789999999988876 8999999986554 678999999999999 9998774 3577888876654
Q ss_pred ccCCCEEEEEccccCCC--CccCcEEEEeccccccee
Q 008089 303 PLKGGVLVFIGGCNKSL--EALDDMYYLYTGLVNERK 337 (578)
Q Consensus 303 ~~~~~~l~v~GG~~~~~--~~~~d~~~l~~~~~~~~~ 337 (578)
.+++|||+||++... ...++++.|+.....|..
T Consensus 606 --~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~ 640 (695)
T 2zwa_A 606 --TPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTS 640 (695)
T ss_dssp --ETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEE
T ss_pred --CCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEE
Confidence 238999999997654 368899999999888873
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.97 E-value=7.9e-30 Score=288.91 Aligned_cols=267 Identities=17% Similarity=0.166 Sum_probs=203.9
Q ss_pred CCCCcceEEEEEcCCCEEEEEcCCCCCC-----CCcccEEEEEcCCCcEEEeeecCCCCCCCccee--EEE-ECCEEEEE
Q 008089 29 PGKRWGHTCNAIKGGRFLYVFGGYGKDN-----CQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHS--CTT-VGENLYVF 100 (578)
Q Consensus 29 P~~R~ghs~v~v~~g~~Iyv~GG~~~~~-----~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs--~~~-~~~kIYv~ 100 (578)
|.||.+|+++++..+++||++||...+. ...+.+++||+.+++|+.+. .+|.+|..|+ +++ .+++||++
T Consensus 183 ~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~---~~~~~~~~~~~~~~~~~~g~lyv~ 259 (656)
T 1k3i_A 183 DLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT---VTVTKHDMFCPGISMDGNGQIVVT 259 (656)
T ss_dssp ECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE---EEECSCCCSSCEEEECTTSCEEEE
T ss_pred cCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc---ccCCCCCCccccccCCCCCCEEEe
Confidence 5567788887775345799999986532 13357999999999999865 4566666554 443 58999999
Q ss_pred cccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEE
Q 008089 101 GGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK 179 (578)
Q Consensus 101 GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~ 179 (578)
||.+.. ++++||+.+++|+++. ++|.+|.+|+++++ +++|||+||... .....+++++||+.+++|+
T Consensus 260 GG~~~~----~v~~yd~~t~~W~~~~---~~~~~R~~~s~~~~~dg~iyv~GG~~~-----~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 260 GGNDAK----KTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTIGGSWS-----GGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp CSSSTT----CEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEECCCCC-----SSSCCCCEEEEETTTTEEE
T ss_pred CCCCCC----ceEEecCcCCceeECC---CCCccccccceEEecCCeEEEEeCccc-----CCcccccceEeCCCCCcce
Confidence 997653 7999999999999875 78999999999999 999999999522 2235788999999999999
Q ss_pred EeccCC--CCCC---------------------------------------------------------CCCceeEEE--
Q 008089 180 RATTSG--NPPS---------------------------------------------------------ARDSHTCSS-- 198 (578)
Q Consensus 180 ~~~~~g--~~p~---------------------------------------------------------~R~~h~~~~-- 198 (578)
.+...+ +++. .+..++++.
T Consensus 328 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~ 407 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYD 407 (656)
T ss_dssp EETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEE
T ss_pred eCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEecc
Confidence 873211 1111 122344443
Q ss_pred -eCCEEEEEecCCC--CCcccC---ceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCC-----CCc
Q 008089 199 -WKNKIIVIGGEDG--HDYYLS---DVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDS-----QNL 266 (578)
Q Consensus 199 -~~~~lyV~GG~~~--~~~~~~---di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~-----~~~ 266 (578)
.+++|||+||... ....++ .+++||+.+++|..+. .+.+|.+|..|+++.+ +++|||+||.... ...
T Consensus 408 ~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~ 486 (656)
T 1k3i_A 408 AVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP 486 (656)
T ss_dssp TTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSB
T ss_pred CCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCc
Confidence 4899999999743 222344 7899999999999986 2348999999998888 8999999997632 245
Q ss_pred cCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEcccc
Q 008089 267 YDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCN 316 (578)
Q Consensus 267 ~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~ 316 (578)
.+++++||+.+++|+.+.. .|.+|..|+.+++ ..+++|||+||..
T Consensus 487 ~~~v~~ydp~t~~W~~~~~---~~~~R~~hs~a~l--l~dg~v~v~GG~~ 531 (656)
T 1k3i_A 487 VFTPEIYVPEQDTFYKQNP---NSIVRVYHSISLL--LPDGRVFNGGGGL 531 (656)
T ss_dssp CCCCEEEEGGGTEEEECCC---CSSCCCTTEEEEE--CTTSCEEEEECCC
T ss_pred ccceEEEcCCCCceeecCC---CCCccccccHhhc--CCCcEEEecCCCC
Confidence 7899999999999998654 4788988886655 3588999999963
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.93 E-value=4.2e-25 Score=250.12 Aligned_cols=222 Identities=18% Similarity=0.151 Sum_probs=169.1
Q ss_pred CCCCCcce--EEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcc-c
Q 008089 28 GPGKRWGH--TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGG-T 103 (578)
Q Consensus 28 ~P~~R~gh--s~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG-~ 103 (578)
+|.+|..| +++++.+ ++||++||+... ++++||+.+++|.++. ++|.+|.+|+++++ +++||++|| .
T Consensus 237 ~~~~~~~~~~~~~~~~~-g~lyv~GG~~~~-----~v~~yd~~t~~W~~~~---~~~~~R~~~s~~~~~dg~iyv~GG~~ 307 (656)
T 1k3i_A 237 TVTKHDMFCPGISMDGN-GQIVVTGGNDAK-----KTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTIGGSW 307 (656)
T ss_dssp EECSCCCSSCEEEECTT-SCEEEECSSSTT-----CEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEECCCC
T ss_pred cCCCCCCccccccCCCC-CCEEEeCCCCCC-----ceEEecCcCCceeECC---CCCccccccceEEecCCeEEEEeCcc
Confidence 44555554 3444444 469999997542 6999999999999964 88999999999999 999999999 5
Q ss_pred CCCCCCCcEEEEECCCCeEEecccCC--CCCC------------------------------------------------
Q 008089 104 DGMNPLRDLHILDTSSHTWISPSVRG--EGPE------------------------------------------------ 133 (578)
Q Consensus 104 ~~~~~~~~v~~yD~~t~~W~~l~~~g--~~P~------------------------------------------------ 133 (578)
++...++++++||+.+++|+.++..+ +++.
T Consensus 308 ~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~ 387 (656)
T 1k3i_A 308 SGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK 387 (656)
T ss_dssp CSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEE
T ss_pred cCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCc
Confidence 66667899999999999999863111 1111
Q ss_pred ---------CCcccEEEE---ECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEe-C
Q 008089 134 ---------AREGHSAAL---VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-K 200 (578)
Q Consensus 134 ---------~R~~hs~~~---~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~-~ 200 (578)
++..+++++ .+++|||+||...............+++||+.+++|..+. .+.+|.+|..|+++++ +
T Consensus 388 ~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~ 466 (656)
T 1k3i_A 388 RQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPD 466 (656)
T ss_dssp CEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTT
T ss_pred cccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCC
Confidence 122344543 4799999999642111111111237899999999999886 3468999999998888 9
Q ss_pred CEEEEEecCCCC-----CcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe--CCEEEEEcCccC
Q 008089 201 NKIIVIGGEDGH-----DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTD 262 (578)
Q Consensus 201 ~~lyV~GG~~~~-----~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~--~~~iyV~GG~~~ 262 (578)
++|||+||.+.. ...++++++||+++++|+.+.. ++.+|.+|+++++ +++|||+||...
T Consensus 467 g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~---~~~~R~~hs~a~ll~dg~v~v~GG~~~ 532 (656)
T 1k3i_A 467 GSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP---NSIVRVYHSISLLLPDGRVFNGGGGLC 532 (656)
T ss_dssp SCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC---CSSCCCTTEEEEECTTSCEEEEECCCC
T ss_pred CCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCC---CCCccccccHhhcCCCcEEEecCCCCC
Confidence 999999997532 2467899999999999999876 8899999998887 899999999643
No 19
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.91 E-value=0.0041 Score=60.95 Aligned_cols=203 Identities=15% Similarity=0.091 Sum_probs=127.0
Q ss_pred CcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCcee
Q 008089 85 RDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVY 164 (578)
Q Consensus 85 R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~ 164 (578)
-+-++....++.+|+-.|..+. +.+.++|+.+.+-..-. .++..-++.+++..+++||+....
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~---S~v~~vD~~tgkv~~~~---~l~~~~fgeGi~~~~~~ly~ltw~----------- 83 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGR---SSVRKVDLETGRILQRA---EVPPPYFGAGIVAWRDRLIQLTWR----------- 83 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTS---CEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS-----------
T ss_pred cccccEEEECCEEEEECCCCCC---ceEEEEECCCCCEEEEE---eCCCCcceeEEEEeCCEEEEEEee-----------
Confidence 4445777889999999997654 46999999998765422 355566788889999999998762
Q ss_pred eceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCC-Cc
Q 008089 165 YNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSP-RA 243 (578)
Q Consensus 165 ~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~-R~ 243 (578)
.+.+++||+++.+-..--.. +..+.+++.-+++||+.-| .+.++.+|+++.+-..--..+..+.+ +.
T Consensus 84 ~~~v~v~D~~tl~~~~ti~~-----~~~Gwglt~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V~~~g~~~~~ 151 (243)
T 3mbr_X 84 NHEGFVYDLATLTPRARFRY-----PGEGWALTSDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKVTAGGRPLDN 151 (243)
T ss_dssp SSEEEEEETTTTEEEEEEEC-----SSCCCEEEECSSCEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred CCEEEEEECCcCcEEEEEeC-----CCCceEEeeCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEEccCCccccc
Confidence 46799999988765432211 1245666666778888754 24599999998764332221111112 11
Q ss_pred eeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCC-CCC------Cce-eeeEeeeeccCCCEEEEEccc
Q 008089 244 GHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGE-GPS------ARF-SVAGDCLDPLKGGVLVFIGGC 315 (578)
Q Consensus 244 ~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~-~P~------~r~-~~~~~~~~~~~~~~l~v~GG~ 315 (578)
---+...+++||+--- ..++|.+.|+++++-...-..+. .|. +.. ...+..+ ...+++|||.|-.
T Consensus 152 lNeLe~~~G~lyanvw------~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~-d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 152 LNELEWVNGELLANVW------LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAF-DAEHDRLFVTGKR 224 (243)
T ss_dssp EEEEEEETTEEEEEET------TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEE-ETTTTEEEEEETT
T ss_pred ceeeEEeCCEEEEEEC------CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEE-cCCCCEEEEECCC
Confidence 1224455888885432 24679999999997655444321 111 111 2223333 3457899998833
Q ss_pred cCCCCccCcEEEEe
Q 008089 316 NKSLEALDDMYYLY 329 (578)
Q Consensus 316 ~~~~~~~~d~~~l~ 329 (578)
...+|.+.
T Consensus 225 ------wp~~~~v~ 232 (243)
T 3mbr_X 225 ------WPMLYEIR 232 (243)
T ss_dssp ------CSEEEEEE
T ss_pred ------CCcEEEEE
Confidence 45566654
No 20
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.79 E-value=0.0076 Score=61.13 Aligned_cols=248 Identities=11% Similarity=0.022 Sum_probs=135.0
Q ss_pred CcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEE-EeeecCCCCCCCcceeEEE-ECCEEEEEcccCCCCCC
Q 008089 32 RWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWS-QPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPL 109 (578)
Q Consensus 32 R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~-~l~~~g~~P~~R~~hs~~~-~~~kIYv~GG~~~~~~~ 109 (578)
...+..+.. ++++|+.... .+.+.++|+.+.+-. ++. . ...-+.++. .++++|+.... .
T Consensus 44 ~~~~~i~~~--~~~lyv~~~~------~~~v~viD~~t~~~~~~i~---~---~~~p~~i~~~~~g~lyv~~~~-----~ 104 (328)
T 3dsm_A 44 DVAQSMVIR--DGIGWIVVNN------SHVIFAIDINTFKEVGRIT---G---FTSPRYIHFLSDEKAYVTQIW-----D 104 (328)
T ss_dssp SCEEEEEEE--TTEEEEEEGG------GTEEEEEETTTCCEEEEEE---C---CSSEEEEEEEETTEEEEEEBS-----C
T ss_pred ccceEEEEE--CCEEEEEEcC------CCEEEEEECcccEEEEEcC---C---CCCCcEEEEeCCCeEEEEECC-----C
Confidence 334555443 5679987652 356999999988763 332 1 122234444 67899998743 3
Q ss_pred CcEEEEECCCCeEEe-cccCCCCC-CCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCC
Q 008089 110 RDLHILDTSSHTWIS-PSVRGEGP-EAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 187 (578)
Q Consensus 110 ~~v~~yD~~t~~W~~-l~~~g~~P-~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~ 187 (578)
+.+.++|+.+.+... ++. +... ....-+.++..++++|+..- + ..+.+.++|+.+.+....-..+..
T Consensus 105 ~~v~~iD~~t~~~~~~i~~-g~~~~~~~~p~~i~~~~~~lyv~~~-~---------~~~~v~viD~~t~~~~~~i~~g~~ 173 (328)
T 3dsm_A 105 YRIFIINPKTYEITGYIEC-PDMDMESGSTEQMVQYGKYVYVNCW-S---------YQNRILKIDTETDKVVDELTIGIQ 173 (328)
T ss_dssp SEEEEEETTTTEEEEEEEC-TTCCTTTCBCCCEEEETTEEEEEEC-T---------TCCEEEEEETTTTEEEEEEECSSC
T ss_pred CeEEEEECCCCeEEEEEEc-CCccccCCCcceEEEECCEEEEEcC-C---------CCCEEEEEECCCCeEEEEEEcCCC
Confidence 579999999987643 222 2200 00022345557889999742 0 135789999998876543222222
Q ss_pred CCCCCceeEEEeCCEEEEEecCCCCCcc----cCceEEEECCCCceEEecCCCCCCCCCceeEEEEe--CCEEEEEcCcc
Q 008089 188 PSARDSHTCSSWKNKIIVIGGEDGHDYY----LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFT 261 (578)
Q Consensus 188 p~~R~~h~~~~~~~~lyV~GG~~~~~~~----~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~--~~~iyV~GG~~ 261 (578)
| ...+..-++++|+.......... .+.++++|+++.+....-. .+....-..++.. ++.+|+..+
T Consensus 174 p----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~---~~~g~~p~~la~~~d~~~lyv~~~-- 244 (328)
T 3dsm_A 174 P----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK---FKLGDWPSEVQLNGTRDTLYWINN-- 244 (328)
T ss_dssp B----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE---CCTTCCCEEEEECTTSCEEEEESS--
T ss_pred c----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe---cCCCCCceeEEEecCCCEEEEEcc--
Confidence 2 11222336888887532211111 3679999999887654322 2222222344444 467888654
Q ss_pred CCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEecc
Q 008089 262 DSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 331 (578)
Q Consensus 262 ~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~~~ 331 (578)
.+++||+.+.+.... ...+.......+.++. ..++.|||....+. ...+.++.++..
T Consensus 245 -------~v~~~d~~t~~~~~~---~~~~~~~~~p~gi~vd-p~~g~lyva~~~~y--~~~~~V~v~d~~ 301 (328)
T 3dsm_A 245 -------DIWRMPVEADRVPVR---PFLEFRDTKYYGLTVN-PNNGEVYVADAIDY--QQQGIVYRYSPQ 301 (328)
T ss_dssp -------SEEEEETTCSSCCSS---CSBCCCSSCEEEEEEC-TTTCCEEEEECTTS--SSEEEEEEECTT
T ss_pred -------EEEEEECCCCceeee---eeecCCCCceEEEEEc-CCCCeEEEEccccc--ccCCEEEEECCC
Confidence 599999998764211 1111111122233332 34788888752111 113456666544
No 21
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.67 E-value=0.031 Score=56.46 Aligned_cols=227 Identities=11% Similarity=0.059 Sum_probs=131.3
Q ss_pred ccEEEEEcCCCcEEEeeec--CCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEe-cccCCCCCCCCc
Q 008089 60 NQVHVFDTVNQTWSQPVIK--GSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWIS-PSVRGEGPEARE 136 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~--g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~-l~~~g~~P~~R~ 136 (578)
+.+.+||+.++++..--.. ...+.....+.++..++++|+.... .+.+.++|+.+.+... ++ ... .
T Consensus 17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~-----~~~v~viD~~t~~~~~~i~---~~~---~ 85 (328)
T 3dsm_A 17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN-----SHVIFAIDINTFKEVGRIT---GFT---S 85 (328)
T ss_dssp BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG-----GTEEEEEETTTCCEEEEEE---CCS---S
T ss_pred ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC-----CCEEEEEECcccEEEEEcC---CCC---C
Confidence 5699999999988652100 1223334456677789999999753 2569999999887632 32 112 2
Q ss_pred ccEEEE-ECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCC-CCCCceeEEEeCCEEEEEecCCCCCc
Q 008089 137 GHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP-SARDSHTCSSWKNKIIVIGGEDGHDY 214 (578)
Q Consensus 137 ~hs~~~-~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p-~~R~~h~~~~~~~~lyV~GG~~~~~~ 214 (578)
.+.++. .++++|+.... .+.++++|+.+.+-...-..+... ....-+.++..++++||..-.
T Consensus 86 p~~i~~~~~g~lyv~~~~-----------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~----- 149 (328)
T 3dsm_A 86 PRYIHFLSDEKAYVTQIW-----------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS----- 149 (328)
T ss_dssp EEEEEEEETTEEEEEEBS-----------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT-----
T ss_pred CcEEEEeCCCeEEEEECC-----------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC-----
Confidence 234444 67899998642 367899999988754322112200 000223444578999998421
Q ss_pred ccCceEEEECCCCceEEecCCCCCCCCCceeEEEE-eCCEEEEEcCccCCCCc----cCcEEEEECCCCcEEEEEeCCCC
Q 008089 215 YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNL----YDDLYMIDVDSGLWTKVITTGEG 289 (578)
Q Consensus 215 ~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~-~~~~iyV~GG~~~~~~~----~~dv~~ydi~t~~W~~l~~~~~~ 289 (578)
..+.+.++|+++.+....-..+..| +.++. -++++|+.......... .+.|+++|+.+.+.......+.+
T Consensus 150 ~~~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g 224 (328)
T 3dsm_A 150 YQNRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG 224 (328)
T ss_dssp TCCEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT
T ss_pred CCCEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC
Confidence 1346999999988765433322222 22222 35788777543211111 36799999999876643333211
Q ss_pred CCCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEeccc
Q 008089 290 PSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGL 332 (578)
Q Consensus 290 P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~~~~ 332 (578)
..+ .+.++ ...++.||+..+ .+|.++...
T Consensus 225 ~~p----~~la~-~~d~~~lyv~~~---------~v~~~d~~t 253 (328)
T 3dsm_A 225 DWP----SEVQL-NGTRDTLYWINN---------DIWRMPVEA 253 (328)
T ss_dssp CCC----EEEEE-CTTSCEEEEESS---------SEEEEETTC
T ss_pred CCc----eeEEE-ecCCCEEEEEcc---------EEEEEECCC
Confidence 111 22223 234778888643 577777653
No 22
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.63 E-value=0.0092 Score=58.44 Aligned_cols=182 Identities=13% Similarity=0.037 Sum_probs=115.6
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeE
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W 122 (578)
++.||+-.|.... +.+.++|+.+++-..-. .+|....+.+++..+++||+.... .+.+++||..+.+-
T Consensus 30 ~~~LyestG~~g~----S~v~~vD~~tgkv~~~~---~l~~~~fgeGi~~~~~~ly~ltw~-----~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 30 RGHLYESTGETGR----SSVRKVDLETGRILQRA---EVPPPYFGAGIVAWRDRLIQLTWR-----NHEGFVYDLATLTP 97 (243)
T ss_dssp TTEEEEEECCTTS----CEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS-----SSEEEEEETTTTEE
T ss_pred CCEEEEECCCCCC----ceEEEEECCCCCEEEEE---eCCCCcceeEEEEeCCEEEEEEee-----CCEEEEEECCcCcE
Confidence 4679998886432 46999999998765522 455556778888999999999653 35799999998775
Q ss_pred EecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEE-EeccCCCCCCC-CCceeEEEeC
Q 008089 123 ISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-RATTSGNPPSA-RDSHTCSSWK 200 (578)
Q Consensus 123 ~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~-~~~~~g~~p~~-R~~h~~~~~~ 200 (578)
..- .+.+..+.+++..+++||+--| .+.++.+|+.+.+-. .+... ..+.+ +.--.+...+
T Consensus 98 ~~t-----i~~~~~Gwglt~dg~~L~vSdg------------s~~l~~iDp~t~~~~~~I~V~-~~g~~~~~lNeLe~~~ 159 (243)
T 3mbr_X 98 RAR-----FRYPGEGWALTSDDSHLYMSDG------------TAVIRKLDPDTLQQVGSIKVT-AGGRPLDNLNELEWVN 159 (243)
T ss_dssp EEE-----EECSSCCCEEEECSSCEEEECS------------SSEEEEECTTTCCEEEEEECE-ETTEECCCEEEEEEET
T ss_pred EEE-----EeCCCCceEEeeCCCEEEEECC------------CCeEEEEeCCCCeEEEEEEEc-cCCcccccceeeEEeC
Confidence 431 1223367788877889999766 367999999987643 33321 11222 1222344558
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCceEEecC-CCCCC--------CCCceeEEEEe--CCEEEEEcCc
Q 008089 201 NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT-SGMVL--------SPRAGHSTVAF--GKNLFVFGGF 260 (578)
Q Consensus 201 ~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~-~g~~p--------~~R~~hs~v~~--~~~iyV~GG~ 260 (578)
++||+--- ..++|.+.|+++++-...-. .+..+ ..-.-.+.+.. ++.+||-|=.
T Consensus 160 G~lyanvw------~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 160 GELLANVW------LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp TEEEEEET------TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEC------CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 88886432 24679999999877433322 11111 11122334444 4678888754
No 23
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.46 E-value=0.023 Score=56.22 Aligned_cols=200 Identities=13% Similarity=0.057 Sum_probs=121.6
Q ss_pred ceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeec
Q 008089 87 SHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYN 166 (578)
Q Consensus 87 ~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~n 166 (578)
..+....++.||+-.|..+. +.+.++|+.+.+-..-. .++..-++.+++..+++||+.... .+
T Consensus 45 tqGL~~~~~~LyestG~~g~---S~v~~vD~~Tgkv~~~~---~l~~~~FgeGit~~g~~ly~ltw~-----------~~ 107 (262)
T 3nol_A 45 TEGFFYRNGYFYESTGLNGR---SSIRKVDIESGKTLQQI---ELGKRYFGEGISDWKDKIVGLTWK-----------NG 107 (262)
T ss_dssp EEEEEEETTEEEEEEEETTE---EEEEEECTTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS-----------SS
T ss_pred cceEEEECCEEEEECCCCCC---ceEEEEECCCCcEEEEE---ecCCccceeEEEEeCCEEEEEEee-----------CC
Confidence 35566668999999997653 35899999998764422 244455677788899999998662 46
Q ss_pred eEEEEEcCcceEEE-eccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCC-Cce
Q 008089 167 DLYILNTETFVWKR-ATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSP-RAG 244 (578)
Q Consensus 167 dv~~yd~~t~~W~~-~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~-R~~ 244 (578)
.+++||+++.+-.. ++. +-.+.+++.-++.||+.-| .+.++.+|+++.+-..--.-+....+ +.-
T Consensus 108 ~v~v~D~~t~~~~~ti~~------~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~l 174 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNY------DGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVTAHGEELPEL 174 (262)
T ss_dssp EEEEEETTTCCEEEEEEC------SSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECEETTEECCCE
T ss_pred EEEEEECccCcEEEEEEC------CCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEeccCCcccccc
Confidence 78999998876543 332 1244566666777888644 24699999998664332211111111 111
Q ss_pred eEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCC-CC-----C-ceeeeEeeeeccCCCEEEEEccccC
Q 008089 245 HSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEG-PS-----A-RFSVAGDCLDPLKGGVLVFIGGCNK 317 (578)
Q Consensus 245 hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~-P~-----~-r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (578)
--+...+++||+-- + ..++|.+.|+++++-...-..+.. |. + -....+.++. ..+++|||.|-.
T Consensus 175 NELe~~~G~lyan~-w-----~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~d-p~~~~lfVTGK~-- 245 (262)
T 3nol_A 175 NELEWVDGEIFANV-W-----QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWD-KEHHRLFVTGKL-- 245 (262)
T ss_dssp EEEEEETTEEEEEE-T-----TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEE-TTTTEEEEEETT--
T ss_pred ceeEEECCEEEEEE-c-----cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEc-CCCCEEEEECCC--
Confidence 12334588888532 2 246799999999976555444311 11 1 1122333333 457899998843
Q ss_pred CCCccCcEEEEe
Q 008089 318 SLEALDDMYYLY 329 (578)
Q Consensus 318 ~~~~~~d~~~l~ 329 (578)
...+|.+.
T Consensus 246 ----Wp~~~ev~ 253 (262)
T 3nol_A 246 ----WPKVFEIT 253 (262)
T ss_dssp ----CSEEEEEE
T ss_pred ----CCceEEEE
Confidence 44566554
No 24
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.33 E-value=0.013 Score=57.98 Aligned_cols=184 Identities=11% Similarity=0.043 Sum_probs=113.0
Q ss_pred EEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECC
Q 008089 39 AIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTS 118 (578)
Q Consensus 39 ~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~ 118 (578)
.+. ++.||+-.|.... +.+.++|+.+++-..-. .++....+.+++..+++||+.... -+.+++||+.
T Consensus 49 ~~~-~~~LyestG~~g~----S~v~~vD~~Tgkv~~~~---~l~~~~FgeGit~~g~~ly~ltw~-----~~~v~v~D~~ 115 (262)
T 3nol_A 49 FYR-NGYFYESTGLNGR----SSIRKVDIESGKTLQQI---ELGKRYFGEGISDWKDKIVGLTWK-----NGLGFVWNIR 115 (262)
T ss_dssp EEE-TTEEEEEEEETTE----EEEEEECTTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS-----SSEEEEEETT
T ss_pred EEE-CCEEEEECCCCCC----ceEEEEECCCCcEEEEE---ecCCccceeEEEEeCCEEEEEEee-----CCEEEEEECc
Confidence 344 4589998885432 46899999998765422 334445667788899999999653 2579999999
Q ss_pred CCeEEe-cccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEE-EeccCCCCCCC-CCcee
Q 008089 119 SHTWIS-PSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-RATTSGNPPSA-RDSHT 195 (578)
Q Consensus 119 t~~W~~-l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~-~~~~~g~~p~~-R~~h~ 195 (578)
+.+-.. ++ .+-.+.+++..++.||+.-| .+.++.+|+.+.+-. .+... ....+ +.--.
T Consensus 116 t~~~~~ti~------~~~eG~glt~dg~~L~~SdG------------s~~i~~iDp~T~~v~~~I~V~-~~g~~~~~lNE 176 (262)
T 3nol_A 116 NLRQVRSFN------YDGEGWGLTHNDQYLIMSDG------------TPVLRFLDPESLTPVRTITVT-AHGEELPELNE 176 (262)
T ss_dssp TCCEEEEEE------CSSCCCCEEECSSCEEECCS------------SSEEEEECTTTCSEEEEEECE-ETTEECCCEEE
T ss_pred cCcEEEEEE------CCCCceEEecCCCEEEEECC------------CCeEEEEcCCCCeEEEEEEec-cCCccccccce
Confidence 876543 22 22366777777888999765 367999999986543 33321 11111 11112
Q ss_pred EEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCC-CCC-------CCCCceeEEEEe--CCEEEEEcCc
Q 008089 196 CSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS-GMV-------LSPRAGHSTVAF--GKNLFVFGGF 260 (578)
Q Consensus 196 ~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~-g~~-------p~~R~~hs~v~~--~~~iyV~GG~ 260 (578)
+...+++||+-- ...++|.+.|+++.+-...-.. +.. +..-.-.+.+.. ++.+||.|-.
T Consensus 177 Le~~~G~lyan~------w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 177 LEWVDGEIFANV------WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEETTEEEEEE------TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred eEEECCEEEEEE------ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 344588888632 1346799999998875443221 111 111223444444 4678888754
No 25
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.28 E-value=0.16 Score=50.34 Aligned_cols=243 Identities=8% Similarity=0.006 Sum_probs=123.1
Q ss_pred EEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEE
Q 008089 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLH 113 (578)
Q Consensus 36 s~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~ 113 (578)
......+++.||+....+......+.++++|+.+.+....-..+.. -++++.. ++.+|+.++.+ +.++
T Consensus 45 ~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~-----~~v~ 114 (353)
T 3vgz_A 45 EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK-----PFGATINNTTQTLWFGNTVN-----SAVT 114 (353)
T ss_dssp EEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC-----CCSEEEETTTTEEEEEETTT-----TEEE
T ss_pred ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC-----cceEEECCCCCEEEEEecCC-----CEEE
Confidence 3444566778887664322211246799999988765432212221 2233333 34588876543 3799
Q ss_pred EEECCCCeEEe-cccCCCCCC-----CCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEecc-C
Q 008089 114 ILDTSSHTWIS-PSVRGEGPE-----AREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATT-S 184 (578)
Q Consensus 114 ~yD~~t~~W~~-l~~~g~~P~-----~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~-~ 184 (578)
+||+.+.+-.. +.. +.... +..-+.+++. ++.+|+.+... ...++++|+.+.+-...-. .
T Consensus 115 ~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----------~~~i~~~d~~~~~~~~~~~~~ 183 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVL-DDRKRTEEVRPLQPRELVADDATNTVYISGIGK----------ESVIWVVDGGNIKLKTAIQNT 183 (353)
T ss_dssp EEETTTCCEEEEEES-CCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS----------SCEEEEEETTTTEEEEEECCC
T ss_pred EEeCCCCeeEEEEec-CCCccccccCCCCCceEEECCCCCEEEEEecCC----------CceEEEEcCCCCceEEEecCC
Confidence 99998876432 221 11111 1112334443 35677766310 2458899998776543321 1
Q ss_pred CCCCCCCCceeEEE-e-CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe--CCEEEEEcCc
Q 008089 185 GNPPSARDSHTCSS-W-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGF 260 (578)
Q Consensus 185 g~~p~~R~~h~~~~-~-~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~--~~~iyV~GG~ 260 (578)
+.. .+.++. . ++.+|+... .+.+++||+.+.+-......+..........++.. ++.+|+....
T Consensus 184 ~~~-----~~~~~~s~dg~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 251 (353)
T 3vgz_A 184 GKM-----STGLALDSEGKRLYTTNA-------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK 251 (353)
T ss_dssp CTT-----CCCCEEETTTTEEEEECT-------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred CCc-----cceEEECCCCCEEEEEcC-------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC
Confidence 111 122222 2 455666532 24688999988764433221111111122223333 4457665432
Q ss_pred cCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEecc
Q 008089 261 TDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 331 (578)
Q Consensus 261 ~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~~~ 331 (578)
.+.+++||+.+.+.......+. + . . ..+ ...++.+|+.+..+ +.++.++..
T Consensus 252 ------~~~v~~~d~~~~~~~~~~~~~~-~--~-~---~~~-s~dg~~l~v~~~~~------~~v~~~d~~ 302 (353)
T 3vgz_A 252 ------AAEVLVVDTRNGNILAKVAAPE-S--L-A---VLF-NPARNEAYVTHRQA------GKVSVIDAK 302 (353)
T ss_dssp ------SSEEEEEETTTCCEEEEEECSS-C--C-C---EEE-ETTTTEEEEEETTT------TEEEEEETT
T ss_pred ------CCEEEEEECCCCcEEEEEEcCC-C--c-e---EEE-CCCCCEEEEEECCC------CeEEEEECC
Confidence 2469999999887655444322 1 1 1 112 24466677765332 246666654
No 26
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.26 E-value=0.015 Score=57.66 Aligned_cols=197 Identities=13% Similarity=0.103 Sum_probs=118.9
Q ss_pred ceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeec
Q 008089 87 SHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYN 166 (578)
Q Consensus 87 ~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~n 166 (578)
..+....++.||+..|..+. +.++|+.+.+-..-. ++..-++.+++..+++||+.... .+
T Consensus 57 tqGL~~~~~~Ly~stG~~g~-----v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g~~Ly~ltw~-----------~~ 116 (268)
T 3nok_A 57 TQGLVFHQGHFFESTGHQGT-----LRQLSLESAQPVWME----RLGNIFAEGLASDGERLYQLTWT-----------EG 116 (268)
T ss_dssp EEEEEEETTEEEEEETTTTE-----EEECCSSCSSCSEEE----ECTTCCEEEEEECSSCEEEEESS-----------SC
T ss_pred cceEEEECCEEEEEcCCCCE-----EEEEECCCCcEEeEE----CCCCcceeEEEEeCCEEEEEEcc-----------CC
Confidence 35667778999999997543 899999987653211 23344567788889999998662 46
Q ss_pred eEEEEEcCcceEEE-eccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCC-ce
Q 008089 167 DLYILNTETFVWKR-ATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPR-AG 244 (578)
Q Consensus 167 dv~~yd~~t~~W~~-~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R-~~ 244 (578)
.+++||+++.+-.. ++. +..+.+++.-++.||+.-| .+.++.+|+++.+-..--..+..+.+. .-
T Consensus 117 ~v~V~D~~Tl~~~~ti~~------~~eGwGLt~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V~~~g~~v~~l 183 (268)
T 3nok_A 117 LLFTWSGMPPQRERTTRY------SGEGWGLCYWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQVKLRGQPVELI 183 (268)
T ss_dssp EEEEEETTTTEEEEEEEC------SSCCCCEEEETTEEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred EEEEEECCcCcEEEEEeC------CCceeEEecCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEeCCCCcccccc
Confidence 78999999876543 332 1234566667888999754 246999999987644322111111111 11
Q ss_pred eEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCC--------CCCCceeeeEeeeeccCCCEEEEEcccc
Q 008089 245 HSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGE--------GPSARFSVAGDCLDPLKGGVLVFIGGCN 316 (578)
Q Consensus 245 hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~--------~P~~r~~~~~~~~~~~~~~~l~v~GG~~ 316 (578)
--+...+++||+-- + ..++|.+.|+++++-...-..+. .........+..+ ...+++|||-|-
T Consensus 184 NeLe~~dG~lyanv-w-----~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~-dp~~~rlfVTGK-- 254 (268)
T 3nok_A 184 NELECANGVIYANI-W-----HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAV-EPGSGRIFMTGK-- 254 (268)
T ss_dssp EEEEEETTEEEEEE-T-----TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEE-CTTTCCEEEEET--
T ss_pred cccEEeCCEEEEEE-C-----CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEE-cCCCCEEEEeCC--
Confidence 12344578888522 2 24679999999997554433321 0111112223333 345778999873
Q ss_pred CCCCccCcEEEEe
Q 008089 317 KSLEALDDMYYLY 329 (578)
Q Consensus 317 ~~~~~~~d~~~l~ 329 (578)
....+|.+.
T Consensus 255 ----~Wp~~~ev~ 263 (268)
T 3nok_A 255 ----LWPRLFEVR 263 (268)
T ss_dssp ----TCSEEEEEE
T ss_pred ----CCCceEEEE
Confidence 345566554
No 27
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.17 E-value=0.013 Score=57.99 Aligned_cols=149 Identities=13% Similarity=-0.010 Sum_probs=97.8
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeE
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W 122 (578)
++.||+..|... .+.++|+.+++-..- . ++....+.+++..+++||+.... -+.+++||+.+.+-
T Consensus 64 ~~~Ly~stG~~g------~v~~iD~~Tgkv~~~--~--l~~~~FgeGit~~g~~Ly~ltw~-----~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 64 QGHFFESTGHQG------TLRQLSLESAQPVWM--E--RLGNIFAEGLASDGERLYQLTWT-----EGLLFTWSGMPPQR 128 (268)
T ss_dssp TTEEEEEETTTT------EEEECCSSCSSCSEE--E--ECTTCCEEEEEECSSCEEEEESS-----SCEEEEEETTTTEE
T ss_pred CCEEEEEcCCCC------EEEEEECCCCcEEeE--E--CCCCcceeEEEEeCCEEEEEEcc-----CCEEEEEECCcCcE
Confidence 567999888532 389999998765431 1 33344667788889999998653 35799999998876
Q ss_pred Ee-cccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEE-eccCCCCCCCCC-ceeEEEe
Q 008089 123 IS-PSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR-ATTSGNPPSARD-SHTCSSW 199 (578)
Q Consensus 123 ~~-l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~-~~~~g~~p~~R~-~h~~~~~ 199 (578)
.. ++ .+-.+.+++..+++||+.-| .+.++.+|+.+.+-.. +... ..+.+.. --.+...
T Consensus 129 ~~ti~------~~~eGwGLt~Dg~~L~vSdG------------s~~l~~iDp~T~~v~~~I~V~-~~g~~v~~lNeLe~~ 189 (268)
T 3nok_A 129 ERTTR------YSGEGWGLCYWNGKLVRSDG------------GTMLTFHEPDGFALVGAVQVK-LRGQPVELINELECA 189 (268)
T ss_dssp EEEEE------CSSCCCCEEEETTEEEEECS------------SSEEEEECTTTCCEEEEEECE-ETTEECCCEEEEEEE
T ss_pred EEEEe------CCCceeEEecCCCEEEEECC------------CCEEEEEcCCCCeEEEEEEeC-CCCcccccccccEEe
Confidence 43 22 22356788888999999876 4679999999876433 3321 1121111 1123445
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCceEE
Q 008089 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE 231 (578)
Q Consensus 200 ~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~ 231 (578)
+++||+-- ...++|.+.|+++.+-..
T Consensus 190 dG~lyanv------w~s~~I~vIDp~TG~V~~ 215 (268)
T 3nok_A 190 NGVIYANI------WHSSDVLEIDPATGTVVG 215 (268)
T ss_dssp TTEEEEEE------TTCSEEEEECTTTCBEEE
T ss_pred CCEEEEEE------CCCCeEEEEeCCCCcEEE
Confidence 88888632 134679999999886433
No 28
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.16 E-value=0.23 Score=49.24 Aligned_cols=229 Identities=13% Similarity=0.062 Sum_probs=116.2
Q ss_pred eEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCC-----CCcceeEEEE--CCEEEEEcccCCCC
Q 008089 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPT-----PRDSHSCTTV--GENLYVFGGTDGMN 107 (578)
Q Consensus 35 hs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~-----~R~~hs~~~~--~~kIYv~GG~~~~~ 107 (578)
+......+++.+|+.++.+ +.+++||+.+.+-...-..+.... +..-++++.. ++.+|+.+...
T Consensus 92 ~~~~~s~dg~~l~v~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--- 162 (353)
T 3vgz_A 92 FGATINNTTQTLWFGNTVN------SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK--- 162 (353)
T ss_dssp CSEEEETTTTEEEEEETTT------TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS---
T ss_pred ceEEECCCCCEEEEEecCC------CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC---
Confidence 4455566677787776532 468999998876533211211111 1112233332 45677776321
Q ss_pred CCCcEEEEECCCCeEEeccc-CCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccC
Q 008089 108 PLRDLHILDTSSHTWISPSV-RGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTS 184 (578)
Q Consensus 108 ~~~~v~~yD~~t~~W~~l~~-~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~ 184 (578)
-..+++||+.+.+-...-. .+. .-+.++.. ++.+|+... .+.++++|+.+.+-......
T Consensus 163 -~~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~------------~~~i~~~d~~~~~~~~~~~~ 224 (353)
T 3vgz_A 163 -ESVIWVVDGGNIKLKTAIQNTGK-----MSTGLALDSEGKRLYTTNA------------DGELITIDTADNKILSRKKL 224 (353)
T ss_dssp -SCEEEEEETTTTEEEEEECCCCT-----TCCCCEEETTTTEEEEECT------------TSEEEEEETTTTEEEEEEEC
T ss_pred -CceEEEEcCCCCceEEEecCCCC-----ccceEEECCCCCEEEEEcC------------CCeEEEEECCCCeEEEEEEc
Confidence 2459999998876543221 111 12233333 345666543 24678899987764433221
Q ss_pred CCCCCCCCceeEEEe--CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCcc
Q 008089 185 GNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFT 261 (578)
Q Consensus 185 g~~p~~R~~h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~ 261 (578)
+..........++.. ++.+|+.... .+.+++||+.+.+....-.. +.+ .+.++.- ++.+|+.+...
T Consensus 225 ~~~~~~~~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~---~~~--~~~~~s~dg~~l~v~~~~~ 293 (353)
T 3vgz_A 225 LDDGKEHFFINISLDTARQRAFITDSK------AAEVLVVDTRNGNILAKVAA---PES--LAVLFNPARNEAYVTHRQA 293 (353)
T ss_dssp CCSSSCCCEEEEEEETTTTEEEEEESS------SSEEEEEETTTCCEEEEEEC---SSC--CCEEEETTTTEEEEEETTT
T ss_pred CCCCCCcccceEEECCCCCEEEEEeCC------CCEEEEEECCCCcEEEEEEc---CCC--ceEEECCCCCEEEEEECCC
Confidence 111111112223333 4567666432 25689999988775544332 222 1222222 34577765432
Q ss_pred CCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEcc
Q 008089 262 DSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGG 314 (578)
Q Consensus 262 ~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG 314 (578)
+.|.+||+.+.+.......+. ...+..+ ...+..||+.+.
T Consensus 294 ------~~v~~~d~~~~~~~~~~~~~~------~~~~~~~-s~dg~~l~v~~~ 333 (353)
T 3vgz_A 294 ------GKVSVIDAKSYKVVKTFDTPT------HPNSLAL-SADGKTLYVSVK 333 (353)
T ss_dssp ------TEEEEEETTTTEEEEEEECCS------EEEEEEE-CTTSCEEEEEEE
T ss_pred ------CeEEEEECCCCeEEEEEecCC------CCCeEEE-cCCCCEEEEEEc
Confidence 459999999887655443322 1122222 244556777553
No 29
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.14 E-value=0.11 Score=51.49 Aligned_cols=201 Identities=13% Similarity=0.007 Sum_probs=119.1
Q ss_pred eEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEE
Q 008089 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHI 114 (578)
Q Consensus 35 hs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~ 114 (578)
|...+. .++.||+..|... .+.+.++|+.+++=..-. +++....+.+++..+++||+..-. -+.+++
T Consensus 24 ~Gl~~~-~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i---~l~~~~fgeGi~~~g~~lyv~t~~-----~~~v~v 90 (266)
T 2iwa_A 24 QGLVYA-ENDTLFESTGLYG----RSSVRQVALQTGKVENIH---KMDDSYFGEGLTLLNEKLYQVVWL-----KNIGFI 90 (266)
T ss_dssp EEEEEC-STTEEEEEECSTT----TCEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEETT-----CSEEEE
T ss_pred ccEEEe-CCCeEEEECCCCC----CCEEEEEECCCCCEEEEE---ecCCCcceEEEEEeCCEEEEEEec-----CCEEEE
Confidence 454444 3358999877422 256999999998755422 233344566778889999999642 357999
Q ss_pred EECCCCeEEe-cccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEE-EeccCCCCCCCC-
Q 008089 115 LDTSSHTWIS-PSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-RATTSGNPPSAR- 191 (578)
Q Consensus 115 yD~~t~~W~~-l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~-~~~~~g~~p~~R- 191 (578)
||+.+.+-.. ++. + . -.+.+++..++++|+.-| .+.++.+|+.+.+-. .+... ..+.+.
T Consensus 91 iD~~t~~v~~~i~~-g-~---~~g~glt~Dg~~l~vs~g------------s~~l~viD~~t~~v~~~I~Vg-~~~~p~~ 152 (266)
T 2iwa_A 91 YDRRTLSNIKNFTH-Q-M---KDGWGLATDGKILYGSDG------------TSILYEIDPHTFKLIKKHNVK-YNGHRVI 152 (266)
T ss_dssp EETTTTEEEEEEEC-C-S---SSCCEEEECSSSEEEECS------------SSEEEEECTTTCCEEEEEECE-ETTEECC
T ss_pred EECCCCcEEEEEEC-C-C---CCeEEEEECCCEEEEECC------------CCeEEEEECCCCcEEEEEEEC-CCCcccc
Confidence 9999876432 221 1 1 235566666778998765 467999999986643 33321 111111
Q ss_pred CceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCC-CC--------CCCCCceeEEEEe--CCEEEEEcCc
Q 008089 192 DSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS-GM--------VLSPRAGHSTVAF--GKNLFVFGGF 260 (578)
Q Consensus 192 ~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~-g~--------~p~~R~~hs~v~~--~~~iyV~GG~ 260 (578)
.-..+...++++|+--. ..++|.+.|+++++-...-.. +. .+..-.-..++.. ++.+||-|+.
T Consensus 153 ~~nele~~dg~lyvn~~------~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~ 226 (266)
T 2iwa_A 153 RLNELEYINGEVWANIW------QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL 226 (266)
T ss_dssp CEEEEEEETTEEEEEET------TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred cceeEEEECCEEEEecC------CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence 11233344888887532 246799999998764332211 10 0111122444444 4689998876
Q ss_pred cCCCCccCcEEEEECCCC
Q 008089 261 TDSQNLYDDLYMIDVDSG 278 (578)
Q Consensus 261 ~~~~~~~~dv~~ydi~t~ 278 (578)
. +.+++.++...
T Consensus 227 ~------~~v~~i~l~~~ 238 (266)
T 2iwa_A 227 W------PKLFEIKLHLV 238 (266)
T ss_dssp C------SEEEEEEEEEC
T ss_pred C------CeEEEEEEecc
Confidence 3 45777776553
No 30
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.06 E-value=0.15 Score=50.44 Aligned_cols=203 Identities=11% Similarity=-0.011 Sum_probs=118.1
Q ss_pred eeEEEEC-CEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeec
Q 008089 88 HSCTTVG-ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYN 166 (578)
Q Consensus 88 hs~~~~~-~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~n 166 (578)
++....+ +.+|+..|..+ -+.+.++|+.+++-...- .++...++.+++..+++||+..-. .+
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~i---~l~~~~fgeGi~~~g~~lyv~t~~-----------~~ 86 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVENIH---KMDDSYFGEGLTLLNEKLYQVVWL-----------KN 86 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEETT-----------CS
T ss_pred ccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEEEEE---ecCCCcceEEEEEeCCEEEEEEec-----------CC
Confidence 5666665 79999877432 256999999998865422 133344566788889999998652 46
Q ss_pred eEEEEEcCcceEE-EeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCC-ce
Q 008089 167 DLYILNTETFVWK-RATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPR-AG 244 (578)
Q Consensus 167 dv~~yd~~t~~W~-~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R-~~ 244 (578)
.+++||+.+.+-. .++ .+ .| .+..++.-++++|+.-| .+.++.+|+++.+-..--..+..+.+. .-
T Consensus 87 ~v~viD~~t~~v~~~i~-~g-~~---~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFT-HQ-MK---DGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp EEEEEETTTTEEEEEEE-CC-SS---SCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred EEEEEECCCCcEEEEEE-CC-CC---CeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence 7899999876543 332 12 12 23344445677888643 356999999986643322212111111 11
Q ss_pred eEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCC-CCC-------CCceeeeEeeeeccCCCEEEEEcccc
Q 008089 245 HSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTG-EGP-------SARFSVAGDCLDPLKGGVLVFIGGCN 316 (578)
Q Consensus 245 hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~-~~P-------~~r~~~~~~~~~~~~~~~l~v~GG~~ 316 (578)
..+...++++|+--.. .++|.+.|+++++-...-..+ ..+ .......+..+ ...++++||.|+..
T Consensus 155 nele~~dg~lyvn~~~------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~-~~~~~~lfVTgk~~ 227 (266)
T 2iwa_A 155 NELEYINGEVWANIWQ------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAW-DQENKRIFVTGKLW 227 (266)
T ss_dssp EEEEEETTEEEEEETT------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEE-ETTTTEEEEEETTC
T ss_pred eeEEEECCEEEEecCC------CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEE-cCCCCEEEEECCCC
Confidence 2233347888865322 467999999998654433321 000 00111222222 24578999988764
Q ss_pred CCCCccCcEEEEeccc
Q 008089 317 KSLEALDDMYYLYTGL 332 (578)
Q Consensus 317 ~~~~~~~d~~~l~~~~ 332 (578)
+.+|.++...
T Consensus 228 ------~~v~~i~l~~ 237 (266)
T 2iwa_A 228 ------PKLFEIKLHL 237 (266)
T ss_dssp ------SEEEEEEEEE
T ss_pred ------CeEEEEEEec
Confidence 3567766543
No 31
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.03 E-value=0.13 Score=53.72 Aligned_cols=186 Identities=16% Similarity=0.140 Sum_probs=94.5
Q ss_pred EEECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEE
Q 008089 91 TTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYI 170 (578)
Q Consensus 91 ~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~ 170 (578)
+..++..++.|+.++ .+.+||+.+.+-...- .+ ......+...++..++.|+. ...+.+
T Consensus 245 ~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~-~~----~~~~v~~~~~~~~~l~~~~~-----------d~~i~i 303 (445)
T 2ovr_B 245 VQYDGRRVVSGAYDF-----MVKVWDPETETCLHTL-QG----HTNRVYSLQFDGIHVVSGSL-----------DTSIRV 303 (445)
T ss_dssp EEECSSCEEEEETTS-----CEEEEEGGGTEEEEEE-CC----CSSCEEEEEECSSEEEEEET-----------TSCEEE
T ss_pred EEECCCEEEEEcCCC-----EEEEEECCCCcEeEEe-cC----CCCceEEEEECCCEEEEEeC-----------CCeEEE
Confidence 334666666666543 4788887776543211 11 11122233336666666763 245788
Q ss_pred EEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe
Q 008089 171 LNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF 250 (578)
Q Consensus 171 yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~ 250 (578)
||+.+.+-...-. .......+...++.+++.|+.++ .+.+||+.+..-...-. + .......-.++..
T Consensus 304 ~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~-~-~~~~~~~v~~~~~ 370 (445)
T 2ovr_B 304 WDVETGNCIHTLT-----GHQSLTSGMELKDNILVSGNADS------TVKIWDIKTGQCLQTLQ-G-PNKHQSAVTCLQF 370 (445)
T ss_dssp EETTTCCEEEEEC-----CCCSCEEEEEEETTEEEEEETTS------CEEEEETTTCCEEEEEC-S-TTSCSSCEEEEEE
T ss_pred EECCCCCEEEEEc-----CCcccEEEEEEeCCEEEEEeCCC------eEEEEECCCCcEEEEEc-c-CCCCCCCEEEEEE
Confidence 8887765432211 11112223334555667776543 48889987655332211 0 1111222334455
Q ss_pred CCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCC
Q 008089 251 GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (578)
Q Consensus 251 ~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (578)
++.+++.|+.+ ..|.+||+.++.....-................+ ..++.+++.|+.+..
T Consensus 371 ~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 371 NKNFVITSSDD------GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA--SNTKLVCAVGSRNGT 430 (445)
T ss_dssp CSSEEEEEETT------SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEE--CSSEEEEEEECSSSS
T ss_pred CCCEEEEEeCC------CeEEEEECCCCceeeeeeccccCCCCceEEEEEe--cCCEEEEEEcccCCC
Confidence 67777777754 3489999998876543311111111112222222 356777788877654
No 32
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.01 E-value=0.05 Score=55.38 Aligned_cols=223 Identities=19% Similarity=0.207 Sum_probs=115.2
Q ss_pred EEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEE
Q 008089 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLH 113 (578)
Q Consensus 36 s~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~ 113 (578)
+.....+++.||+.|+.+ +.+.++|+.+++.......+. .-.+++.. +..||+.|..+ ..++
T Consensus 36 ~~~~s~dg~~l~~~~~~d------~~i~v~d~~~~~~~~~~~~~~-----~v~~~~~spdg~~l~~~~~~~-----~~v~ 99 (391)
T 1l0q_A 36 GAVISPDGTKVYVANAHS------NDVSIIDTATNNVIATVPAGS-----SPQGVAVSPDGKQVYVTNMAS-----STLS 99 (391)
T ss_dssp EEEECTTSSEEEEEEGGG------TEEEEEETTTTEEEEEEECSS-----SEEEEEECTTSSEEEEEETTT-----TEEE
T ss_pred eEEECCCCCEEEEECCCC------CeEEEEECCCCeEEEEEECCC-----CccceEECCCCCEEEEEECCC-----CEEE
Confidence 333445666777777532 468999998887654321111 11222222 34566665432 4699
Q ss_pred EEECCCCeEEecccCCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCC
Q 008089 114 ILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSAR 191 (578)
Q Consensus 114 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R 191 (578)
+||+.+.+....-.. ...-.+++.. +..+|+.++. ...++++|+.+.+....-..+.
T Consensus 100 v~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~-----------~~~v~~~d~~~~~~~~~~~~~~----- 158 (391)
T 1l0q_A 100 VIDTTSNTVAGTVKT-----GKSPLGLALSPDGKKLYVTNNG-----------DKTVSVINTVTKAVINTVSVGR----- 158 (391)
T ss_dssp EEETTTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEETT-----------TTEEEEEETTTTEEEEEEECCS-----
T ss_pred EEECCCCeEEEEEeC-----CCCcceEEECCCCCEEEEEeCC-----------CCEEEEEECCCCcEEEEEecCC-----
Confidence 999998876443211 1112333333 2357777652 2468899998877654432211
Q ss_pred CceeEEEe--CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccC
Q 008089 192 DSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYD 268 (578)
Q Consensus 192 ~~h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~ 268 (578)
.-..++.. ++.||+.++.+ +.+.+||+.+.+...... ....-.+++.. +++.+++++... ...
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~---~~~ 224 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDS------MSISVIDTVTNSVIDTVK-----VEAAPSGIAVNPEGTKAYVTNVDK---YFN 224 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEE-----CSSEEEEEEECTTSSEEEEEEECS---SCC
T ss_pred CcceEEECCCCCEEEEEeCCC------CEEEEEECCCCeEEEEEe-----cCCCccceEECCCCCEEEEEecCc---CCC
Confidence 11233322 34666766543 348999998876544332 11112223332 344444443211 134
Q ss_pred cEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEcccc
Q 008089 269 DLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCN 316 (578)
Q Consensus 269 dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~ 316 (578)
.+++||+.+..-......+.. .....+ ...+..||+.++.+
T Consensus 225 ~v~~~d~~~~~~~~~~~~~~~------~~~~~~-s~dg~~l~~s~~~d 265 (391)
T 1l0q_A 225 TVSMIDTGTNKITARIPVGPD------PAGIAV-TPDGKKVYVALSFX 265 (391)
T ss_dssp EEEEEETTTTEEEEEEECCSS------EEEEEE-CTTSSEEEEEETTT
T ss_pred cEEEEECCCCeEEEEEecCCC------ccEEEE-ccCCCEEEEEcCCC
Confidence 699999998764433332211 122222 23455677766543
No 33
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.046 Score=54.77 Aligned_cols=198 Identities=10% Similarity=0.015 Sum_probs=98.2
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--C--CEEEEEcccCCCCCCCcE
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--G--ENLYVFGGTDGMNPLRDL 112 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~--~kIYv~GG~~~~~~~~~v 112 (578)
++++..++.+++.|+.+ ..+.+||.....+..+..... ....-.++.. + +.+++.|+.++ .+
T Consensus 16 ~~~~s~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~l~s~~~dg-----~v 81 (379)
T 3jrp_A 16 DAVLDYYGKRLATCSSD------KTIKIFEVEGETHKLIDTLTG---HEGPVWRVDWAHPKFGTILASCSYDG-----KV 81 (379)
T ss_dssp EEEECSSSSEEEEEETT------SCEEEEEEETTEEEEEEEECC---CSSCEEEEEECCGGGCSEEEEEETTS-----CE
T ss_pred EEEEcCCCCEEEEEECC------CcEEEEecCCCcceeeeEecC---CCCcEEEEEeCCCCCCCEEEEeccCC-----EE
Confidence 33443333456666643 347888887666655432111 1122222333 2 56777777653 48
Q ss_pred EEEECCCCeEEecccCCCCCCCCcccEEEEE-C--CEEEEEccCCCCCCCCCceeeceEEEEEcCcceE-EEeccCCCCC
Q 008089 113 HILDTSSHTWISPSVRGEGPEAREGHSAALV-G--KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW-KRATTSGNPP 188 (578)
Q Consensus 113 ~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~--~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W-~~~~~~g~~p 188 (578)
.+||+.+.+|..+..... ....-.+++.. + +.+++.|+. ...+.+||+.+... ...... .
T Consensus 82 ~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~-----------d~~i~v~d~~~~~~~~~~~~~-~-- 145 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASS-----------DGKVSVVEFKENGTTSPIIID-A-- 145 (379)
T ss_dssp EEEEEETTEEEEEEEECC--CSSCEEEEEECCGGGCSEEEEEET-----------TSEEEEEECCTTSCCCEEEEE-C--
T ss_pred EEEEcCCCceeEeeeecC--CCcceEEEEeCCCCCCCEEEEecC-----------CCcEEEEecCCCCceeeEEec-C--
Confidence 889999988765442211 11112222232 2 456777763 24567778765521 111100 0
Q ss_pred CCCCceeEEEe--------------CCEEEEEecCCCCCcccCceEEEECCCC--ceEEecCCCCCCCCC-ceeEEEEe-
Q 008089 189 SARDSHTCSSW--------------KNKIIVIGGEDGHDYYLSDVHILDTDTL--TWKELNTSGMVLSPR-AGHSTVAF- 250 (578)
Q Consensus 189 ~~R~~h~~~~~--------------~~~lyV~GG~~~~~~~~~di~~yD~~t~--~W~~v~~~g~~p~~R-~~hs~v~~- 250 (578)
....-.++... ++.+++.|+.++ .+.+||+.+. .|..+.. ..... .-.+++..
T Consensus 146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~---~~~h~~~v~~~~~sp 216 (379)
T 3jrp_A 146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVLEST---LEGHSDWVRDVAWSP 216 (379)
T ss_dssp CTTCEEEEEECCCC----------CTTCEEEEEETTS------CEEEEEEETTTTEEEEEEE---ECCCSSCEEEEEECC
T ss_pred CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC------eEEEEEecCCCcceeeEEE---EecccCcEeEEEECC
Confidence 00111122221 367788887654 3777877543 3444432 11111 12223333
Q ss_pred C---CEEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 251 G---KNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 251 ~---~~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
+ +.+++.|+.+. .+.+||+.+..
T Consensus 217 ~~~~~~~l~s~~~dg------~i~iwd~~~~~ 242 (379)
T 3jrp_A 217 TVLLRSYLASVSQDR------TCIIWTQDNEQ 242 (379)
T ss_dssp CCSSSEEEEEEETTS------CEEEEEESSTT
T ss_pred CCCCCCeEEEEeCCC------EEEEEeCCCCC
Confidence 3 57788877643 38888888763
No 34
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.60 E-value=0.15 Score=51.78 Aligned_cols=188 Identities=16% Similarity=0.253 Sum_probs=103.7
Q ss_pred CEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEEECCCCe
Q 008089 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHT 121 (578)
Q Consensus 44 ~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~yD~~t~~ 121 (578)
+++|+.|+.+ +.+.++|..+++....- .+. ..-.+++.. +..||+.|+.+ ..+.++|+.+.+
T Consensus 2 ~~l~vs~~~d------~~v~v~d~~~~~~~~~~-~~~----~~~~~~~~s~dg~~l~~~~~~d-----~~i~v~d~~~~~ 65 (391)
T 1l0q_A 2 TFAYIANSES------DNISVIDVTSNKVTATI-PVG----SNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNN 65 (391)
T ss_dssp EEEEEEETTT------TEEEEEETTTTEEEEEE-ECS----SSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTE
T ss_pred CEEEEEcCCC------CEEEEEECCCCeEEEEe-ecC----CCcceEEECCCCCEEEEECCCC-----CeEEEEECCCCe
Confidence 3577777643 46899999887655422 111 111233332 34577777654 369999998887
Q ss_pred EEecccCCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEe
Q 008089 122 WISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW 199 (578)
Q Consensus 122 W~~l~~~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~ 199 (578)
....-.. .. .-..++.. +..||+.|.. ...+++||+.+.+........ .....++..
T Consensus 66 ~~~~~~~---~~--~v~~~~~spdg~~l~~~~~~-----------~~~v~v~d~~~~~~~~~~~~~-----~~~~~~~~s 124 (391)
T 1l0q_A 66 VIATVPA---GS--SPQGVAVSPDGKQVYVTNMA-----------SSTLSVIDTTSNTVAGTVKTG-----KSPLGLALS 124 (391)
T ss_dssp EEEEEEC---SS--SEEEEEECTTSSEEEEEETT-----------TTEEEEEETTTTEEEEEEECS-----SSEEEEEEC
T ss_pred EEEEEEC---CC--CccceEECCCCCEEEEEECC-----------CCEEEEEECCCCeEEEEEeCC-----CCcceEEEC
Confidence 6542211 11 22233333 3456666542 246889999987665443211 112233332
Q ss_pred -C-CEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe--CCEEEEEcCccCCCCccCcEEEEEC
Q 008089 200 -K-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDV 275 (578)
Q Consensus 200 -~-~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~--~~~iyV~GG~~~~~~~~~dv~~ydi 275 (578)
+ +.+|+.++.+ +.+++||+.+.+.......+ ..-..++.. +..+|+.++.. +.+++||+
T Consensus 125 ~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~~~dg~~l~~~~~~~------~~v~~~d~ 187 (391)
T 1l0q_A 125 PDGKKLYVTNNGD------KTVSVINTVTKAVINTVSVG-----RSPKGIAVTPDGTKVYVANFDS------MSISVIDT 187 (391)
T ss_dssp TTSSEEEEEETTT------TEEEEEETTTTEEEEEEECC-----SSEEEEEECTTSSEEEEEETTT------TEEEEEET
T ss_pred CCCCEEEEEeCCC------CEEEEEECCCCcEEEEEecC-----CCcceEEECCCCCEEEEEeCCC------CEEEEEEC
Confidence 3 4576776533 35899999887765543311 111233333 34566666542 35999999
Q ss_pred CCCcEEEEEe
Q 008089 276 DSGLWTKVIT 285 (578)
Q Consensus 276 ~t~~W~~l~~ 285 (578)
.+........
T Consensus 188 ~~~~~~~~~~ 197 (391)
T 1l0q_A 188 VTNSVIDTVK 197 (391)
T ss_dssp TTTEEEEEEE
T ss_pred CCCeEEEEEe
Confidence 9886554433
No 35
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.50 E-value=0.71 Score=45.15 Aligned_cols=229 Identities=14% Similarity=0.180 Sum_probs=111.7
Q ss_pred EEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEE
Q 008089 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLH 113 (578)
Q Consensus 36 s~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~ 113 (578)
.++.+..++.+++.|+.+ ..+.++|..+.+....- .+. ...-..+.. ++++++.|+.++ .+.
T Consensus 27 ~~~~~s~~~~~l~s~~~d------g~i~iw~~~~~~~~~~~-~~h----~~~v~~~~~~~~~~~l~s~~~d~-----~i~ 90 (312)
T 4ery_A 27 SSVKFSPNGEWLASSSAD------KLIKIWGAYDGKFEKTI-SGH----KLGISDVAWSSDSNLLVSASDDK-----TLK 90 (312)
T ss_dssp EEEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEE-CCC----SSCEEEEEECTTSSEEEEEETTS-----EEE
T ss_pred EEEEECCCCCEEEEeeCC------CeEEEEeCCCcccchhh-ccC----CCceEEEEEcCCCCEEEEECCCC-----EEE
Confidence 344444444466666643 34788998887765532 111 111222222 566777777653 588
Q ss_pred EEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCC
Q 008089 114 ILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARD 192 (578)
Q Consensus 114 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~ 192 (578)
+||+.+.+-...- .+. . ..-.++... ++.+++.|+. ...+.++|+.+.+-...-. ....
T Consensus 91 vwd~~~~~~~~~~-~~~--~-~~v~~~~~~~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~-----~~~~ 150 (312)
T 4ery_A 91 IWDVSSGKCLKTL-KGH--S-NYVFCCNFNPQSNLIVSGSF-----------DESVRIWDVKTGKCLKTLP-----AHSD 150 (312)
T ss_dssp EEETTTCCEEEEE-ECC--S-SCEEEEEECSSSSEEEEEET-----------TSCEEEEETTTCCEEEEEC-----CCSS
T ss_pred EEECCCCcEEEEE-cCC--C-CCEEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCEEEEEec-----CCCC
Confidence 8998876543211 110 0 011122222 3456666773 2357788888765432211 1111
Q ss_pred ceeEEEe--CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcE
Q 008089 193 SHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDL 270 (578)
Q Consensus 193 ~h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv 270 (578)
...++.+ ++.+++.|+.++ .+.+||+.+.+....... .........+..-+++.++.|+.+ ..+
T Consensus 151 ~v~~~~~~~~~~~l~~~~~d~------~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d------~~i 216 (312)
T 4ery_A 151 PVSAVHFNRDGSLIVSSSYDG------LCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKYILAATLD------NTL 216 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEECC--SSCCCEEEEEECTTSSEEEEEETT------TEE
T ss_pred cEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCceeeEEec--cCCCceEEEEECCCCCEEEEEcCC------CeE
Confidence 1222222 566777777553 488899887654332211 111111111222245566666653 358
Q ss_pred EEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCC
Q 008089 271 YMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (578)
Q Consensus 271 ~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (578)
.+||+.+..-........ .......... ...++.+++.|+.+..
T Consensus 217 ~iwd~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~l~sg~~dg~ 260 (312)
T 4ery_A 217 KLWDYSKGKCLKTYTGHK--NEKYCIFANF--SVTGGKWIVSGSEDNL 260 (312)
T ss_dssp EEEETTTTEEEEEECSSC--CSSSCCCEEE--ECSSSCEEEECCTTSC
T ss_pred EEEECCCCcEEEEEEecC--CceEEEEEEE--EeCCCcEEEEECCCCE
Confidence 999998876443322111 1111111111 1245667777876543
No 36
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.50 E-value=0.34 Score=47.37 Aligned_cols=222 Identities=12% Similarity=0.071 Sum_probs=110.4
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEE
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHI 114 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~ 114 (578)
++.+..+..+++.|+.+ ..+.+||..+.+....... ........+..+ +++.++.|+.++ .+.+
T Consensus 102 ~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg-----~v~~ 167 (337)
T 1gxr_A 102 SCKLLPDGCTLIVGGEA------STLSIWDLAAPTPRIKAEL---TSSAPACYALAISPDSKVCFSCCSDG-----NIAV 167 (337)
T ss_dssp EEEECTTSSEEEEEESS------SEEEEEECCCC--EEEEEE---ECSSSCEEEEEECTTSSEEEEEETTS-----CEEE
T ss_pred EEEEcCCCCEEEEEcCC------CcEEEEECCCCCcceeeec---ccCCCceEEEEECCCCCEEEEEeCCC-----cEEE
Confidence 34443333355566532 4688999988775432211 111111122222 556777776543 4899
Q ss_pred EECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCc
Q 008089 115 LDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (578)
Q Consensus 115 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~ 193 (578)
||+.+.+....- .+ . ...-.+++.. ++..++.|+. ...+.+||+.+..-...... + ..-
T Consensus 168 ~d~~~~~~~~~~-~~--~-~~~i~~~~~~~~~~~l~~~~~-----------dg~i~~~d~~~~~~~~~~~~---~--~~v 227 (337)
T 1gxr_A 168 WDLHNQTLVRQF-QG--H-TDGASCIDISNDGTKLWTGGL-----------DNTVRSWDLREGRQLQQHDF---T--SQI 227 (337)
T ss_dssp EETTTTEEEEEE-CC--C-SSCEEEEEECTTSSEEEEEET-----------TSEEEEEETTTTEEEEEEEC---S--SCE
T ss_pred EeCCCCceeeee-ec--c-cCceEEEEECCCCCEEEEEec-----------CCcEEEEECCCCceEeeecC---C--Cce
Confidence 999887654321 11 1 1111222332 4556666662 24578889887654333211 1 111
Q ss_pred eeEEE-eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEE
Q 008089 194 HTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLY 271 (578)
Q Consensus 194 h~~~~-~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~ 271 (578)
.+++. .++.++++|+.++ .+.+||+.+..-..+.. ....-.++... ++++++.|+.+ ..+.
T Consensus 228 ~~~~~s~~~~~l~~~~~~~------~i~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d------g~i~ 290 (337)
T 1gxr_A 228 FSLGYCPTGEWLAVGMESS------NVEVLHVNKPDKYQLHL-----HESCVLSLKFAYCGKWFVSTGKD------NLLN 290 (337)
T ss_dssp EEEEECTTSSEEEEEETTS------CEEEEETTSSCEEEECC-----CSSCEEEEEECTTSSEEEEEETT------SEEE
T ss_pred EEEEECCCCCEEEEEcCCC------cEEEEECCCCCeEEEcC-----CccceeEEEECCCCCEEEEecCC------CcEE
Confidence 22222 2566777776543 48889988765443322 11112222222 45666777653 3489
Q ss_pred EEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccC
Q 008089 272 MIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (578)
Q Consensus 272 ~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (578)
+||+.+..-...... ........+ ..++.+++.|+.+.
T Consensus 291 ~~~~~~~~~~~~~~~------~~~v~~~~~--s~~~~~l~~~~~dg 328 (337)
T 1gxr_A 291 AWRTPYGASIFQSKE------SSSVLSCDI--SVDDKYIVTGSGDK 328 (337)
T ss_dssp EEETTTCCEEEEEEC------SSCEEEEEE--CTTSCEEEEEETTS
T ss_pred EEECCCCeEEEEecC------CCcEEEEEE--CCCCCEEEEecCCC
Confidence 999998865533221 111222223 34556666676544
No 37
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.48 E-value=0.89 Score=46.04 Aligned_cols=174 Identities=18% Similarity=0.231 Sum_probs=97.2
Q ss_pred ccEEEEEcCCCc--EEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCC--eEEecccCCCCCCCC
Q 008089 60 NQVHVFDTVNQT--WSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH--TWISPSVRGEGPEAR 135 (578)
Q Consensus 60 ~~v~~yD~~t~~--W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~P~~R 135 (578)
..++.||..+++ |+... .......+...+.+..++.+|+ |..+ ..++.||+.+. .|+.... .|...
T Consensus 153 g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~~~v~~-g~~~-----g~l~~~d~~tG~~~w~~~~~---~~~~~ 222 (376)
T 3q7m_A 153 GQLQALNEADGAVKWTVNL-DMPSLSLRGESAPTTAFGAAVV-GGDN-----GRVSAVLMEQGQMIWQQRIS---QATGS 222 (376)
T ss_dssp SEEEEEETTTCCEEEEEEC-CC-----CCCCCCEEETTEEEE-CCTT-----TEEEEEETTTCCEEEEEECC---C----
T ss_pred CeEEEEECCCCcEEEEEeC-CCCceeecCCCCcEEECCEEEE-EcCC-----CEEEEEECCCCcEEEEEecc---cCCCC
Confidence 358889987764 77532 1111111223344555777776 3221 36999998765 4765321 11110
Q ss_pred --------cccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcc--eEEEeccCCCCCCCCCceeEEEeCCEEEE
Q 008089 136 --------EGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIV 205 (578)
Q Consensus 136 --------~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~--~W~~~~~~g~~p~~R~~h~~~~~~~~lyV 205 (578)
.....+..++.+|+.+. ...++.+|+.+. .|+.... .....++.++.||+
T Consensus 223 ~~~~~~~~~~~~p~~~~~~v~~~~~------------~g~l~~~d~~tG~~~w~~~~~--------~~~~~~~~~~~l~~ 282 (376)
T 3q7m_A 223 TEIDRLSDVDTTPVVVNGVVFALAY------------NGNLTALDLRSGQIMWKRELG--------SVNDFIVDGNRIYL 282 (376)
T ss_dssp -------CCCCCCEEETTEEEEECT------------TSCEEEEETTTCCEEEEECCC--------CEEEEEEETTEEEE
T ss_pred cccccccccCCCcEEECCEEEEEec------------CcEEEEEECCCCcEEeeccCC--------CCCCceEECCEEEE
Confidence 12333456788888643 235788998765 5764321 12345566888888
Q ss_pred EecCCCCCcccCceEEEECCCCc--eEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCc--EE
Q 008089 206 IGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL--WT 281 (578)
Q Consensus 206 ~GG~~~~~~~~~di~~yD~~t~~--W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~--W~ 281 (578)
... ...++.||+.+.+ |+.-.. ..+...+.+..++.||+... ...+++||+.+++ |+
T Consensus 283 ~~~-------~g~l~~~d~~tG~~~w~~~~~-----~~~~~~~~~~~~~~l~v~~~-------~g~l~~~d~~tG~~~~~ 343 (376)
T 3q7m_A 283 VDQ-------NDRVMALTIDGGVTLWTQSDL-----LHRLLTSPVLYNGNLVVGDS-------EGYLHWINVEDGRFVAQ 343 (376)
T ss_dssp EET-------TCCEEEEETTTCCEEEEECTT-----TTSCCCCCEEETTEEEEECT-------TSEEEEEETTTCCEEEE
T ss_pred EcC-------CCeEEEEECCCCcEEEeeccc-----CCCcccCCEEECCEEEEEeC-------CCeEEEEECCCCcEEEE
Confidence 653 1358999987765 765311 12223334556788877532 1349999999885 54
Q ss_pred E
Q 008089 282 K 282 (578)
Q Consensus 282 ~ 282 (578)
.
T Consensus 344 ~ 344 (376)
T 3q7m_A 344 Q 344 (376)
T ss_dssp E
T ss_pred E
Confidence 3
No 38
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.38 E-value=0.12 Score=58.79 Aligned_cols=213 Identities=9% Similarity=0.055 Sum_probs=113.4
Q ss_pred cEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCC-CCccc
Q 008089 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPE-AREGH 138 (578)
Q Consensus 61 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~-~R~~h 138 (578)
-+++||+.+++++..... .++. ..-.+++.. ++.||+-.. .-+++||+.+.+|........... ...-.
T Consensus 428 Gl~~~~~~~~~~~~~~~~-~~~~-~~v~~i~~d~~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (781)
T 3v9f_A 428 NISYYNTRLKKFQIIELE-KNEL-LDVRVFYEDKNKKIWIGTH-------AGVFVIDLASKKVIHHYDTSNSQLLENFVR 498 (781)
T ss_dssp EEEEECSSSCEEEECCST-TTCC-CCEEEEEECTTSEEEEEET-------TEEEEEESSSSSCCEEECTTTSSCSCSCEE
T ss_pred CEEEEcCCCCcEEEeccC-CCCC-CeEEEEEECCCCCEEEEEC-------CceEEEeCCCCeEEecccCcccccccceeE
Confidence 466777777777664311 1111 111222222 467777431 359999999888865432111011 11111
Q ss_pred EEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEE-eCCEEEEEecCCCCCccc
Q 008089 139 SAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYL 216 (578)
Q Consensus 139 s~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~-~~~~lyV~GG~~~~~~~~ 216 (578)
+++.. ++.|+|- .. ...+++||+.+.+++........+... -.++.. .++.|++-..
T Consensus 499 ~i~~d~~g~lWig-t~-----------~~Gl~~~~~~~~~~~~~~~~~~l~~~~-i~~i~~d~~g~lWi~T~-------- 557 (781)
T 3v9f_A 499 SIAQDSEGRFWIG-TF-----------GGGVGIYTPDMQLVRKFNQYEGFCSNT-INQIYRSSKGQMWLATG-------- 557 (781)
T ss_dssp EEEECTTCCEEEE-ES-----------SSCEEEECTTCCEEEEECTTTTCSCSC-EEEEEECTTSCEEEEET--------
T ss_pred EEEEcCCCCEEEE-Ec-----------CCCEEEEeCCCCeEEEccCCCCCCCCe-eEEEEECCCCCEEEEEC--------
Confidence 22222 3566663 21 134889999999998875422222211 112222 2567776421
Q ss_pred Cce-EEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCce
Q 008089 217 SDV-HILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARF 294 (578)
Q Consensus 217 ~di-~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~ 294 (578)
+.+ .+||+.+.++........+|.... .+++.- ++.|++.+. +.+.+||+.+..+.........+...+
T Consensus 558 ~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~--------~Gl~~~~~~~~~~~~~~~~dGl~~~~f 628 (781)
T 3v9f_A 558 EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN--------TGISCYITSKKCFYTYDHSNNIPQGSF 628 (781)
T ss_dssp TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS--------SCEEEEETTTTEEEEECGGGTCCSSCE
T ss_pred CCceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC--------CceEEEECCCCceEEecccCCcccccc
Confidence 236 889999888887654322333332 333333 456766542 248999999999988766544555555
Q ss_pred eeeEeeeeccCCCEEEEEccc
Q 008089 295 SVAGDCLDPLKGGVLVFIGGC 315 (578)
Q Consensus 295 ~~~~~~~~~~~~~~l~v~GG~ 315 (578)
...+.+. ..++.|++ ||.
T Consensus 629 ~~~~~~~--~~~G~l~~-g~~ 646 (781)
T 3v9f_A 629 ISGCVTK--DHNGLIYF-GSI 646 (781)
T ss_dssp EEEEEEE--CTTSCEEE-EET
T ss_pred ccCceEE--CCCCEEEE-ECC
Confidence 5444443 34666665 544
No 39
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.34 E-value=0.23 Score=51.72 Aligned_cols=185 Identities=14% Similarity=0.188 Sum_probs=98.3
Q ss_pred EEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEe
Q 008089 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWIS 124 (578)
Q Consensus 45 ~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~ 124 (578)
..++.|+.+ +.+.+||..+.+-...- .+ ....-.+...++.+++.|+.++ .+.+||+.+.+...
T Consensus 144 ~~l~~g~~d------g~i~iwd~~~~~~~~~~-~~----h~~~v~~l~~~~~~l~sg~~dg-----~i~vwd~~~~~~~~ 207 (435)
T 1p22_A 144 QKIVSGLRD------NTIKIWDKNTLECKRIL-TG----HTGSVLCLQYDERVIITGSSDS-----TVRVWDVNTGEMLN 207 (435)
T ss_dssp SEEEEEESS------SCEEEEESSSCCEEEEE-CC----CSSCEEEEECCSSEEEEEETTS-----CEEEEESSSCCEEE
T ss_pred CEEEEEeCC------CeEEEEeCCCCeEEEEE-cC----CCCcEEEEEECCCEEEEEcCCC-----eEEEEECCCCcEEE
Confidence 366667643 35889999877654321 11 1222334445778888888654 48899988876533
Q ss_pred cccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEE
Q 008089 125 PSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKII 204 (578)
Q Consensus 125 l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~ly 204 (578)
.- .+ ......++...+.+++.|+. ...+.+||+.+..-..... ..........++.+++..+
T Consensus 208 ~~-~~----h~~~v~~l~~~~~~l~s~s~-----------dg~i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~l 269 (435)
T 1p22_A 208 TL-IH----HCEAVLHLRFNNGMMVTCSK-----------DRSIAVWDMASPTDITLRR--VLVGHRAAVNVVDFDDKYI 269 (435)
T ss_dssp EE-CC----CCSCEEEEECCTTEEEEEET-----------TSCEEEEECSSSSCCEEEE--EECCCSSCEEEEEEETTEE
T ss_pred EE-cC----CCCcEEEEEEcCCEEEEeeC-----------CCcEEEEeCCCCCCceeee--EecCCCCcEEEEEeCCCEE
Confidence 21 11 11122233334556666663 2457778877643211100 0011111223334466667
Q ss_pred EEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcE
Q 008089 205 VIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 280 (578)
Q Consensus 205 V~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W 280 (578)
+.|+.+ ..+.+||+.+..-...-. .......++..++.+++.|+.+ ..|.+||+.++.-
T Consensus 270 ~s~~~d------g~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~g~~d------g~i~iwd~~~~~~ 328 (435)
T 1p22_A 270 VSASGD------RTIKVWNTSTCEFVRTLN-----GHKRGIACLQYRDRLVVSGSSD------NTIRLWDIECGAC 328 (435)
T ss_dssp EEEETT------SEEEEEETTTCCEEEEEE-----CCSSCEEEEEEETTEEEEEETT------SCEEEEETTTCCE
T ss_pred EEEeCC------CeEEEEECCcCcEEEEEc-----CCCCcEEEEEeCCCEEEEEeCC------CeEEEEECCCCCE
Confidence 777654 348889988765332211 1111223344456677777754 3489999998753
No 40
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.33 E-value=0.19 Score=50.14 Aligned_cols=155 Identities=15% Similarity=0.163 Sum_probs=75.1
Q ss_pred EEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCCcEEEEE
Q 008089 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILD 116 (578)
Q Consensus 38 v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~yD 116 (578)
+.+..++.++++|+.+ +.+.+||..+.+|..+....... ..-.++... ++++++.|+.++ .+.+||
T Consensus 14 ~~~s~~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd 80 (372)
T 1k8k_C 14 HAWNKDRTQIAICPNN------HEVHIYEKSGNKWVQVHELKEHN--GQVTGVDWAPDSNRIVTCGTDR-----NAYVWT 80 (372)
T ss_dssp EEECTTSSEEEEECSS------SEEEEEEEETTEEEEEEEEECCS--SCEEEEEEETTTTEEEEEETTS-----CEEEEE
T ss_pred EEECCCCCEEEEEeCC------CEEEEEeCCCCcEEeeeeecCCC--CcccEEEEeCCCCEEEEEcCCC-----eEEEEE
Confidence 3343333466667642 46899999988765543221111 111122222 566777777543 488899
Q ss_pred CCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcce-EEEeccCCCCCCCCCce
Q 008089 117 TSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV-WKRATTSGNPPSARDSH 194 (578)
Q Consensus 117 ~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~-W~~~~~~g~~p~~R~~h 194 (578)
+.+.++....... .....-.+++.. ++++++.|+.. ..+.+||+.+.. |...... ..+....-.
T Consensus 81 ~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----------~~v~i~d~~~~~~~~~~~~~-~~~~~~~i~ 146 (372)
T 1k8k_C 81 LKGRTWKPTLVIL--RINRAARCVRWAPNEKKFAVGSGS-----------RVISICYFEQENDWWVCKHI-KKPIRSTVL 146 (372)
T ss_dssp EETTEEEEEEECC--CCSSCEEEEEECTTSSEEEEEETT-----------SSEEEEEEETTTTEEEEEEE-CTTCCSCEE
T ss_pred CCCCeeeeeEEee--cCCCceeEEEECCCCCEEEEEeCC-----------CEEEEEEecCCCcceeeeee-ecccCCCee
Confidence 8888875432111 111111222222 35566666631 335566655443 3222111 011111112
Q ss_pred eEEEe-CCEEEEEecCCCCCcccCceEEEECC
Q 008089 195 TCSSW-KNKIIVIGGEDGHDYYLSDVHILDTD 225 (578)
Q Consensus 195 ~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~~ 225 (578)
++... ++.+++.|+.++ .+.+||+.
T Consensus 147 ~~~~~~~~~~l~~~~~dg------~i~~~d~~ 172 (372)
T 1k8k_C 147 SLDWHPNSVLLAAGSCDF------KCRIFSAY 172 (372)
T ss_dssp EEEECTTSSEEEEEETTS------CEEEEECC
T ss_pred EEEEcCCCCEEEEEcCCC------CEEEEEcc
Confidence 22222 566777777543 37788854
No 41
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.32 E-value=1.1 Score=45.37 Aligned_cols=186 Identities=15% Similarity=0.256 Sum_probs=102.7
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCC--cEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCC
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH 120 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~ 120 (578)
++.||+... ...++.||..++ .|+... .+ ....+.+..++.+|+..+ -..++.||..+.
T Consensus 103 ~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~-~~-----~~~~~p~~~~~~v~v~~~------~g~l~~~d~~tG 163 (376)
T 3q7m_A 103 GGHVYIGSE-------KAQVYALNTSDGTVAWQTKV-AG-----EALSRPVVSDGLVLIHTS------NGQLQALNEADG 163 (376)
T ss_dssp TTEEEEEET-------TSEEEEEETTTCCEEEEEEC-SS-----CCCSCCEEETTEEEEECT------TSEEEEEETTTC
T ss_pred CCEEEEEcC-------CCEEEEEECCCCCEEEEEeC-CC-----ceEcCCEEECCEEEEEcC------CCeEEEEECCCC
Confidence 456777433 146999999876 476522 11 112233455888887543 136999999876
Q ss_pred e--EEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcc--eEEEeccCC--CCCCCC---
Q 008089 121 T--WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSG--NPPSAR--- 191 (578)
Q Consensus 121 ~--W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~--~W~~~~~~g--~~p~~R--- 191 (578)
+ |+... .......+...+.+..++.+|+ |.. ...++.||+.+. .|+...... .....+
T Consensus 164 ~~~W~~~~-~~~~~~~~~~~~~~~~~~~v~~-g~~-----------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~ 230 (376)
T 3q7m_A 164 AVKWTVNL-DMPSLSLRGESAPTTAFGAAVV-GGD-----------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSD 230 (376)
T ss_dssp CEEEEEEC-CC-----CCCCCCEEETTEEEE-CCT-----------TTEEEEEETTTCCEEEEEECCC-----------C
T ss_pred cEEEEEeC-CCCceeecCCCCcEEECCEEEE-EcC-----------CCEEEEEECCCCcEEEEEecccCCCCcccccccc
Confidence 4 86532 1111111222344555777776 331 235888998754 576543210 000001
Q ss_pred CceeEEEeCCEEEEEecCCCCCcccCceEEEECCCC--ceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCc
Q 008089 192 DSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTL--TWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDD 269 (578)
Q Consensus 192 ~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~--~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~d 269 (578)
.....++.++.+|+.+. ...++.||+++. .|+.-.. ...+.+..++.||+.... ..
T Consensus 231 ~~~~p~~~~~~v~~~~~-------~g~l~~~d~~tG~~~w~~~~~--------~~~~~~~~~~~l~~~~~~-------g~ 288 (376)
T 3q7m_A 231 VDTTPVVVNGVVFALAY-------NGNLTALDLRSGQIMWKRELG--------SVNDFIVDGNRIYLVDQN-------DR 288 (376)
T ss_dssp CCCCCEEETTEEEEECT-------TSCEEEEETTTCCEEEEECCC--------CEEEEEEETTEEEEEETT-------CC
T ss_pred cCCCcEEECCEEEEEec-------CcEEEEEECCCCcEEeeccCC--------CCCCceEECCEEEEEcCC-------Ce
Confidence 12233455788887541 235889998765 4764311 123455668888887531 35
Q ss_pred EEEEECCCCc--EEE
Q 008089 270 LYMIDVDSGL--WTK 282 (578)
Q Consensus 270 v~~ydi~t~~--W~~ 282 (578)
++.||+.+++ |+.
T Consensus 289 l~~~d~~tG~~~w~~ 303 (376)
T 3q7m_A 289 VMALTIDGGVTLWTQ 303 (376)
T ss_dssp EEEEETTTCCEEEEE
T ss_pred EEEEECCCCcEEEee
Confidence 9999998875 654
No 42
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.29 E-value=0.35 Score=49.65 Aligned_cols=204 Identities=9% Similarity=-0.025 Sum_probs=105.0
Q ss_pred EEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEE
Q 008089 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHIL 115 (578)
Q Consensus 38 v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~y 115 (578)
+.+..++.+|+.++.+ ..++++|+.+++.......+........-.++.+ ++++|+.|+.+ ..+.+|
T Consensus 128 ~~~s~~~~~~~~~~~~------~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d-----~~v~~~ 196 (433)
T 3bws_A 128 VRFIDNTRLAIPLLED------EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA-----NAVHVF 196 (433)
T ss_dssp CEESSSSEEEEEBTTS------SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG-----TEEEEE
T ss_pred EEEeCCCeEEEEeCCC------CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC-----CEEEEE
Confidence 3344356677776642 3589999998876653211011111112222333 67888888754 358999
Q ss_pred ECCCCeEEecccCCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCc
Q 008089 116 DTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (578)
Q Consensus 116 D~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~ 193 (578)
|+.+.+....-. .....-..++.. ++.+|+.++. ...+++||+.+.+....-.. ...-
T Consensus 197 d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~i~~~d~~~~~~~~~~~~-----~~~~ 256 (433)
T 3bws_A 197 DLKTLAYKATVD----LTGKWSKILLYDPIRDLVYCSNWI-----------SEDISVIDRKTKLEIRKTDK-----IGLP 256 (433)
T ss_dssp ETTTCCEEEEEE----CSSSSEEEEEEETTTTEEEEEETT-----------TTEEEEEETTTTEEEEECCC-----CSEE
T ss_pred ECCCceEEEEEc----CCCCCeeEEEEcCCCCEEEEEecC-----------CCcEEEEECCCCcEEEEecC-----CCCc
Confidence 998765432110 111122233343 3457776652 24688999988766443211 1112
Q ss_pred eeEEEe-CCEEEEEecCCCCCcc--cCceEEEECCCCceEEecCCCCCCCCCceeEEEEe--CCEEEEEcCccCCCCccC
Q 008089 194 HTCSSW-KNKIIVIGGEDGHDYY--LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYD 268 (578)
Q Consensus 194 h~~~~~-~~~lyV~GG~~~~~~~--~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~--~~~iyV~GG~~~~~~~~~ 268 (578)
..++.. +++.+++++....... -..+++||+.+.+...... .+. .-..++.. ++.+|+.++.. +
T Consensus 257 ~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~---~~~--~~~~~~~~~~g~~l~~~~~~~------~ 325 (433)
T 3bws_A 257 RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG---PPG--NKRHIVSGNTENKIYVSDMCC------S 325 (433)
T ss_dssp EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE---EEE--CEEEEEECSSTTEEEEEETTT------T
T ss_pred eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc---CCC--CcceEEECCCCCEEEEEecCC------C
Confidence 223322 4544444443222111 2468999998775443321 011 11122222 34677776543 3
Q ss_pred cEEEEECCCCcEEEE
Q 008089 269 DLYMIDVDSGLWTKV 283 (578)
Q Consensus 269 dv~~ydi~t~~W~~l 283 (578)
.+.+||+.+..-...
T Consensus 326 ~v~v~d~~~~~~~~~ 340 (433)
T 3bws_A 326 KIEVYDLKEKKVQKS 340 (433)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEEECCCCcEEEE
Confidence 599999998764443
No 43
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.21 E-value=0.42 Score=49.09 Aligned_cols=215 Identities=11% Similarity=0.006 Sum_probs=107.4
Q ss_pred cEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccE
Q 008089 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHS 139 (578)
Q Consensus 61 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs 139 (578)
.+|.+|+.+..+..+... +....-.+++.. ++++|+.++.+ ..+.+||+.+.+.......+..........
T Consensus 102 ~l~~~d~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~ 173 (433)
T 3bws_A 102 KLIALDKEGITHRFISRF---KTGFQPKSVRFIDNTRLAIPLLED-----EGMDVLDINSGQTVRLSPPEKYKKKLGFVE 173 (433)
T ss_dssp CEEECCBTTCSEEEEEEE---ECSSCBCCCEESSSSEEEEEBTTS-----SSEEEEETTTCCEEEECCCHHHHTTCCEEE
T ss_pred EEEEECCCCCcceEEEEE---cCCCCceEEEEeCCCeEEEEeCCC-----CeEEEEECCCCeEeeecCcccccccCCcee
Confidence 688888877765544311 111111222222 67888887654 349999999887654221100011111112
Q ss_pred EEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEe--CCEEEEEecCCCCCcc
Q 008089 140 AALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYY 215 (578)
Q Consensus 140 ~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~--~~~lyV~GG~~~~~~~ 215 (578)
.+.. ++++|+.|+. ...+.+||+.+.+....-. .....-.+++.. ++.+|+.++.+
T Consensus 174 ~~~~~~~~~~~~s~~~-----------d~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~----- 233 (433)
T 3bws_A 174 TISIPEHNELWVSQMQ-----------ANAVHVFDLKTLAYKATVD----LTGKWSKILLYDPIRDLVYCSNWIS----- 233 (433)
T ss_dssp EEEEGGGTEEEEEEGG-----------GTEEEEEETTTCCEEEEEE----CSSSSEEEEEEETTTTEEEEEETTT-----
T ss_pred EEEEcCCCEEEEEECC-----------CCEEEEEECCCceEEEEEc----CCCCCeeEEEEcCCCCEEEEEecCC-----
Confidence 2223 5778887762 2568899988765433211 011111223332 44566666433
Q ss_pred cCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCc--cCcEEEEECCCCcEEEEEeCCCCCCC
Q 008089 216 LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNL--YDDLYMIDVDSGLWTKVITTGEGPSA 292 (578)
Q Consensus 216 ~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~--~~dv~~ydi~t~~W~~l~~~~~~P~~ 292 (578)
+.+.+||+.+.+...... ....-.+++.. +++.+++++....... -..|++||+.+..-........
T Consensus 234 -~~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~---- 303 (433)
T 3bws_A 234 -EDISVIDRKTKLEIRKTD-----KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG---- 303 (433)
T ss_dssp -TEEEEEETTTTEEEEECC-----CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE----
T ss_pred -CcEEEEECCCCcEEEEec-----CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC----
Confidence 358999998876544322 12222333333 3445555554322111 2468999999886544332111
Q ss_pred ceeeeEeeeeccCCCEEEEEcccc
Q 008089 293 RFSVAGDCLDPLKGGVLVFIGGCN 316 (578)
Q Consensus 293 r~~~~~~~~~~~~~~~l~v~GG~~ 316 (578)
.....++ ...+..+|+.++.+
T Consensus 304 --~~~~~~~-~~~g~~l~~~~~~~ 324 (433)
T 3bws_A 304 --NKRHIVS-GNTENKIYVSDMCC 324 (433)
T ss_dssp --CEEEEEE-CSSTTEEEEEETTT
T ss_pred --CcceEEE-CCCCCEEEEEecCC
Confidence 1112222 23455787776543
No 44
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.19 E-value=0.26 Score=56.04 Aligned_cols=212 Identities=11% Similarity=0.055 Sum_probs=110.6
Q ss_pred cEEEEEcCCCcEEEeeecC-CCCCCCcceeEEEE-CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCC---CCCCCC
Q 008089 61 QVHVFDTVNQTWSQPVIKG-SPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRG---EGPEAR 135 (578)
Q Consensus 61 ~v~~yD~~t~~W~~l~~~g-~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g---~~P~~R 135 (578)
-+++||+.++++..+.... .++... -.+++.. ++.||+-.. +.+++||+.+.+|....... .++..
T Consensus 428 Gl~~~d~~~~~~~~~~~~~~~l~~~~-v~~i~~d~~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~- 498 (795)
T 4a2l_A 428 GLSILHRNSGQVENFNQRNSQLVNEN-VYAILPDGEGNLWLGTL-------SALVRFNPEQRSFTTIEKEKDGTPVVSK- 498 (795)
T ss_dssp EEEEEETTTCCEEEECTTTSCCSCSC-EEEEEECSSSCEEEEES-------SCEEEEETTTTEEEECCBCTTCCBCCCC-
T ss_pred ceeEEeCCCCcEEEeecCCCCcCCCe-eEEEEECCCCCEEEEec-------CceeEEeCCCCeEEEccccccccccCCc-
Confidence 3677787777766653211 111111 1122222 456776532 34999999999998764321 11111
Q ss_pred cccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccC-CCCCCCC-CceeEEE-eCCEEEEEecCCC
Q 008089 136 EGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTS-GNPPSAR-DSHTCSS-WKNKIIVIGGEDG 211 (578)
Q Consensus 136 ~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~-g~~p~~R-~~h~~~~-~~~~lyV~GG~~~ 211 (578)
.-.+++.. +++|++-.. ..+++||+.+..+ ..... .....+. .-.+++. .++.|++-..
T Consensus 499 ~i~~i~~d~~g~lWigt~-------------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~--- 561 (795)
T 4a2l_A 499 QITTLFRDSHKRLWIGGE-------------EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR--- 561 (795)
T ss_dssp CEEEEEECTTCCEEEEES-------------SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES---
T ss_pred eEEEEEECCCCCEEEEeC-------------CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC---
Confidence 11122222 356766322 3488999988888 44311 0111111 1112222 2567776421
Q ss_pred CCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCC
Q 008089 212 HDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGP 290 (578)
Q Consensus 212 ~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P 290 (578)
+.+++||+.+.++........+|... -.+++.- ++.|++-+. +.+.+||+++..++........+
T Consensus 562 -----~Gl~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi~t~--------~Gl~~~~~~~~~~~~~~~~dGl~ 627 (795)
T 4a2l_A 562 -----EGFYCFNEKDKQIKRYNTTNGLPNNV-VYGILEDSFGRLWLSTN--------RGISCFNPETEKFRNFTESDGLQ 627 (795)
T ss_dssp -----SCEEEEETTTTEEEEECGGGTCSCSC-EEEEEECTTSCEEEEET--------TEEEEEETTTTEEEEECGGGTCS
T ss_pred -----CCceeECCCCCcEEEeCCCCCCchhh-eEEEEECCCCCEEEEcC--------CceEEEcCCCCcEEEcCCcCCCc
Confidence 13889999999888765422233322 2233322 456777552 24899999999998776554455
Q ss_pred CCceeeeEeeeeccCCCEEEEEccc
Q 008089 291 SARFSVAGDCLDPLKGGVLVFIGGC 315 (578)
Q Consensus 291 ~~r~~~~~~~~~~~~~~~l~v~GG~ 315 (578)
...+...+.+. ..++.|++ ||.
T Consensus 628 ~~~f~~~~~~~--~~~G~l~~-g~~ 649 (795)
T 4a2l_A 628 SNQFNTASYCR--TSVGQMYF-GGI 649 (795)
T ss_dssp CSCEEEEEEEE--CTTSCEEE-EET
T ss_pred cccCccCceeE--CCCCeEEE-ecC
Confidence 55554444443 34666665 444
No 45
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.17 E-value=0.9 Score=44.38 Aligned_cols=197 Identities=16% Similarity=0.127 Sum_probs=96.4
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEE
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHI 114 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~ 114 (578)
++.+..+..+++.|+.+ ..+.+||..+.+-...- .+. ...-.++.+ ++.+++.|+.++ .+.+
T Consensus 70 ~~~~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~~-~~~----~~~v~~~~~~~~~~~l~s~~~d~-----~i~i 133 (312)
T 4ery_A 70 DVAWSSDSNLLVSASDD------KTLKIWDVSSGKCLKTL-KGH----SNYVFCCNFNPQSNLIVSGSFDE-----SVRI 133 (312)
T ss_dssp EEEECTTSSEEEEEETT------SEEEEEETTTCCEEEEE-ECC----SSCEEEEEECSSSSEEEEEETTS-----CEEE
T ss_pred EEEEcCCCCEEEEECCC------CEEEEEECCCCcEEEEE-cCC----CCCEEEEEEcCCCCEEEEEeCCC-----cEEE
Confidence 33343333355556532 35888998876543311 111 111112222 456777777654 4889
Q ss_pred EECCCCeEEecccCCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCC
Q 008089 115 LDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARD 192 (578)
Q Consensus 115 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~ 192 (578)
||+.+.+-...- +........+.. ++.+++.|+. ...+.+||+.+......-.. ......
T Consensus 134 wd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~~wd~~~~~~~~~~~~--~~~~~~ 195 (312)
T 4ery_A 134 WDVKTGKCLKTL-----PAHSDPVSAVHFNRDGSLIVSSSY-----------DGLCRIWDTASGQCLKTLID--DDNPPV 195 (312)
T ss_dssp EETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEET-----------TSCEEEEETTTCCEEEEECC--SSCCCE
T ss_pred EECCCCEEEEEe-----cCCCCcEEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCceeeEEec--cCCCce
Confidence 998876543211 111111122222 4566777773 23577889887654332111 011111
Q ss_pred ceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEE-eCCEEEEEcCccCCCCccCcEE
Q 008089 193 SHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDLY 271 (578)
Q Consensus 193 ~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~-~~~~iyV~GG~~~~~~~~~dv~ 271 (578)
.......++..++.|+.+ +.+.+||+.+.+-...-. +............. .++.+++.|+.+. .|.
T Consensus 196 ~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~sg~~dg------~i~ 262 (312)
T 4ery_A 196 SFVKFSPNGKYILAATLD------NTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSVTGGKWIVSGSEDN------LVY 262 (312)
T ss_dssp EEEEECTTSSEEEEEETT------TEEEEEETTTTEEEEEEC-SSCCSSSCCCEEEECSSSCEEEECCTTS------CEE
T ss_pred EEEEECCCCCEEEEEcCC------CeEEEEECCCCcEEEEEE-ecCCceEEEEEEEEeCCCcEEEEECCCC------EEE
Confidence 111122256666777654 348889988765333221 11111111112222 3566777777543 489
Q ss_pred EEECCCCcE
Q 008089 272 MIDVDSGLW 280 (578)
Q Consensus 272 ~ydi~t~~W 280 (578)
+||+.+..-
T Consensus 263 vwd~~~~~~ 271 (312)
T 4ery_A 263 IWNLQTKEI 271 (312)
T ss_dssp EEETTTCCE
T ss_pred EEECCCchh
Confidence 999988753
No 46
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.11 E-value=0.34 Score=49.72 Aligned_cols=210 Identities=16% Similarity=0.161 Sum_probs=100.4
Q ss_pred cEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEE
Q 008089 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSA 140 (578)
Q Consensus 61 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~ 140 (578)
.+.+||..+.+....- . .....-.++..++.+++.|+.+ ..+.+||+.+..-......+ ....-.++
T Consensus 157 ~i~iwd~~~~~~~~~~-~----~~~~~v~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~---~~~~v~~~ 223 (401)
T 4aez_A 157 LVDIYDVESQTKLRTM-A----GHQARVGCLSWNRHVLSSGSRS-----GAIHHHDVRIANHQIGTLQG---HSSEVCGL 223 (401)
T ss_dssp CEEEEETTTCCEEEEE-C----CCSSCEEEEEEETTEEEEEETT-----SEEEEEETTSSSCEEEEEEC---CSSCEEEE
T ss_pred eEEEEECcCCeEEEEe-c----CCCCceEEEEECCCEEEEEcCC-----CCEEEEecccCcceeeEEcC---CCCCeeEE
Confidence 5788888776544321 1 1122223334466677777765 35888888743211111111 01111122
Q ss_pred EEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEe--CCEEEEEecCCCCCcccC
Q 008089 141 ALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLS 217 (578)
Q Consensus 141 ~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~--~~~lyV~GG~~~~~~~~~ 217 (578)
+.. ++.+++.|+. ...+.+||+.+..-...-. .. ...-.+++.. +..+++.||... -.
T Consensus 224 ~~~~~~~~l~s~~~-----------d~~v~iwd~~~~~~~~~~~--~~--~~~v~~~~~~p~~~~ll~~~~gs~----d~ 284 (401)
T 4aez_A 224 AWRSDGLQLASGGN-----------DNVVQIWDARSSIPKFTKT--NH--NAAVKAVAWCPWQSNLLATGGGTM----DK 284 (401)
T ss_dssp EECTTSSEEEEEET-----------TSCEEEEETTCSSEEEEEC--CC--SSCCCEEEECTTSTTEEEEECCTT----TC
T ss_pred EEcCCCCEEEEEeC-----------CCeEEEccCCCCCccEEec--CC--cceEEEEEECCCCCCEEEEecCCC----CC
Confidence 222 4567777773 2457888888654332211 01 1111222222 456777775221 23
Q ss_pred ceEEEECCCCceEEecCCCCCCCCCceeEEEEe--CCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCcee
Q 008089 218 DVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFS 295 (578)
Q Consensus 218 di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~--~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~ 295 (578)
.+.+||+.+..-...-. ....-.+++.. +..+++.+|..+ +.+.+||+.+.....+..... ....
T Consensus 285 ~i~i~d~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~g~~d-----g~i~v~~~~~~~~~~~~~~~~---h~~~ 351 (401)
T 4aez_A 285 QIHFWNAATGARVNTVD-----AGSQVTSLIWSPHSKEIMSTHGFPD-----NNLSIWSYSSSGLTKQVDIPA---HDTR 351 (401)
T ss_dssp EEEEEETTTCCEEEEEE-----CSSCEEEEEECSSSSEEEEEECTTT-----CEEEEEEEETTEEEEEEEEEC---CSSC
T ss_pred EEEEEECCCCCEEEEEe-----CCCcEEEEEECCCCCeEEEEeecCC-----CcEEEEecCCccceeEEEecC---CCCC
Confidence 48899988765443322 11111222222 334555545433 358999999887776543211 1111
Q ss_pred eeEeeeeccCCCEEEEEccccC
Q 008089 296 VAGDCLDPLKGGVLVFIGGCNK 317 (578)
Q Consensus 296 ~~~~~~~~~~~~~l~v~GG~~~ 317 (578)
.....+ ..++.+++.||.+.
T Consensus 352 v~~~~~--s~dg~~l~s~~~dg 371 (401)
T 4aez_A 352 VLYSAL--SPDGRILSTAASDE 371 (401)
T ss_dssp CCEEEE--CTTSSEEEEECTTS
T ss_pred EEEEEE--CCCCCEEEEEeCCC
Confidence 222222 34566666676653
No 47
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.10 E-value=0.88 Score=50.96 Aligned_cols=212 Identities=17% Similarity=0.222 Sum_probs=108.8
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCC--cEEEeeecCCC--C---CCCcceeEEEECCEEEEEcccCCCCCCCcEEEE
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSP--P---TPRDSHSCTTVGENLYVFGGTDGMNPLRDLHIL 115 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~--P---~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~y 115 (578)
++.||+... .+.++.+|..++ .|+.-...... + ......+.+..+++||+... -..++.+
T Consensus 77 ~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~------dg~l~al 143 (677)
T 1kb0_A 77 DGIMYVSAS-------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW------DGRLIAL 143 (677)
T ss_dssp TTEEEEECG-------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT------TSEEEEE
T ss_pred CCEEEEECC-------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC------CCEEEEE
Confidence 557888654 246999999876 58762210000 0 00122345567889988743 2469999
Q ss_pred ECCCCe--EEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcc--eEEEeccCCCC--CC
Q 008089 116 DTSSHT--WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNP--PS 189 (578)
Q Consensus 116 D~~t~~--W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~--~W~~~~~~g~~--p~ 189 (578)
|..+.+ |+...............+-++.++.+|+-.+... ......++.||..+. .|+.-...... +.
T Consensus 144 D~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~------~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~ 217 (677)
T 1kb0_A 144 DAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE------YGVRGYITAYDAETGERKWRWFSVPGDPSKPF 217 (677)
T ss_dssp ETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT------TCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred ECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccc------cCCCCEEEEEECCCCcEEEEeccCCCCccccc
Confidence 998764 8753210100001122234456788877543111 112467899999875 48765322111 00
Q ss_pred ---------------CC---------CceeEEE--eCCEEEEEecCC------------CCCcccCceEEEECCCCc--e
Q 008089 190 ---------------AR---------DSHTCSS--WKNKIIVIGGED------------GHDYYLSDVHILDTDTLT--W 229 (578)
Q Consensus 190 ---------------~R---------~~h~~~~--~~~~lyV~GG~~------------~~~~~~~di~~yD~~t~~--W 229 (578)
.. ....+++ .++.||+-.|.. +.+.+...++.+|+++.+ |
T Consensus 218 ~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W 297 (677)
T 1kb0_A 218 EDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKW 297 (677)
T ss_dssp SSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEE
T ss_pred cccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEE
Confidence 00 0011222 256777654421 334456679999998764 7
Q ss_pred EEecCCCCCCCCCce--eEEE--EeCC---EEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 230 KELNTSGMVLSPRAG--HSTV--AFGK---NLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 230 ~~v~~~g~~p~~R~~--hs~v--~~~~---~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
..-.........+.. ..++ ..++ .+++++..+ ..++++|..+++
T Consensus 298 ~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~------G~l~~lD~~tG~ 348 (677)
T 1kb0_A 298 HYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKN------GFFFVLDRTNGK 348 (677)
T ss_dssp EEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTT------SEEEEEETTTCC
T ss_pred EEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCC------CEEEEEECCCCC
Confidence 754331111111111 1111 1244 566666543 358899988874
No 48
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.09 E-value=0.87 Score=47.19 Aligned_cols=145 Identities=16% Similarity=0.155 Sum_probs=75.3
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEc
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~ 173 (578)
++..++.|+.+ ..+.+||+.+.+-...- .+ ......++..++..++.|+. ...+.+||+
T Consensus 208 ~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~-~~----~~~~v~~~~~~~~~l~~~~~-----------dg~i~iwd~ 266 (445)
T 2ovr_B 208 HEKRVVSGSRD-----ATLRVWDIETGQCLHVL-MG----HVAAVRCVQYDGRRVVSGAY-----------DFMVKVWDP 266 (445)
T ss_dssp ETTEEEEEETT-----SEEEEEESSSCCEEEEE-EC----CSSCEEEEEECSSCEEEEET-----------TSCEEEEEG
T ss_pred cCCEEEEEeCC-----CEEEEEECCCCcEEEEE-cC----CcccEEEEEECCCEEEEEcC-----------CCEEEEEEC
Confidence 44445555544 34777887765532211 01 11122233346666666663 245778888
Q ss_pred CcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCE
Q 008089 174 ETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKN 253 (578)
Q Consensus 174 ~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~ 253 (578)
.+..-...-. .......+..+++..++.|+.++ .+.+||+.+..-...-. .......++..++.
T Consensus 267 ~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~ 330 (445)
T 2ovr_B 267 ETETCLHTLQ-----GHTNRVYSLQFDGIHVVSGSLDT------SIRVWDVETGNCIHTLT-----GHQSLTSGMELKDN 330 (445)
T ss_dssp GGTEEEEEEC-----CCSSCEEEEEECSSEEEEEETTS------CEEEEETTTCCEEEEEC-----CCCSCEEEEEEETT
T ss_pred CCCcEeEEec-----CCCCceEEEEECCCEEEEEeCCC------eEEEEECCCCCEEEEEc-----CCcccEEEEEEeCC
Confidence 7665332211 11112233444777777777653 38889987765333211 11112223334555
Q ss_pred EEEEcCccCCCCccCcEEEEECCCCcEE
Q 008089 254 LFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (578)
Q Consensus 254 iyV~GG~~~~~~~~~dv~~ydi~t~~W~ 281 (578)
+++.|+.+ ..+.+||+.+..-.
T Consensus 331 ~l~~~~~d------g~i~vwd~~~~~~~ 352 (445)
T 2ovr_B 331 ILVSGNAD------STVKIWDIKTGQCL 352 (445)
T ss_dssp EEEEEETT------SCEEEEETTTCCEE
T ss_pred EEEEEeCC------CeEEEEECCCCcEE
Confidence 66777653 24899999877543
No 49
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.09 E-value=0.18 Score=52.72 Aligned_cols=188 Identities=13% Similarity=0.090 Sum_probs=100.1
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CC-EEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcc
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GE-NLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREG 137 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~-kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~ 137 (578)
..++++|+.+++...+. ..+ ....+.+.. ++ +|++.+..++ ...++++|+.+.+...+... . ...
T Consensus 203 ~~i~~~d~~tg~~~~l~---~~~--~~~~~~~~spdg~~la~~~~~~g---~~~i~~~d~~~~~~~~l~~~---~--~~~ 269 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVA---SFP--RHNGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDG---R--SNN 269 (415)
T ss_dssp CEEEEEETTTCCEEEEE---CCS--SCEEEEEECTTSSEEEEEECTTS---SCEEEEEETTTCCEEECCCC---S--SCE
T ss_pred cEEEEEECCCCcEEEee---cCC--CcccCEEEcCCCCEEEEEEecCC---CceEEEEECCCCCEEeCcCC---C--Ccc
Confidence 46999999988876653 111 111222222 44 4554554332 24699999998877654311 1 111
Q ss_pred cEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEE-EeCCEEEEEecCCCCCcc
Q 008089 138 HSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCS-SWKNKIIVIGGEDGHDYY 215 (578)
Q Consensus 138 hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~-~~~~~lyV~GG~~~~~~~ 215 (578)
...+.. +++.+++++... -...+|++|+.+..-..+... ......++ ..+++.+++++....
T Consensus 270 ~~~~~spdg~~l~~~s~~~--------g~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~~spdG~~l~~~~~~~g--- 333 (415)
T 2hqs_A 270 TEPTWFPDSQNLAFTSDQA--------GRPQVYKVNINGGAPQRITWE-----GSQNQDADVSSDGKFMVMVSSNGG--- 333 (415)
T ss_dssp EEEEECTTSSEEEEEECTT--------SSCEEEEEETTSSCCEECCCS-----SSEEEEEEECTTSSEEEEEEECSS---
T ss_pred cceEECCCCCEEEEEECCC--------CCcEEEEEECCCCCEEEEecC-----CCcccCeEECCCCCEEEEEECcCC---
Confidence 222222 455445444110 124688999988765554321 11111222 225665566554322
Q ss_pred cCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEE
Q 008089 216 LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (578)
Q Consensus 216 ~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~ 284 (578)
...++++|+.+.....+... ......+..-+++.+++++.... ...||++|+.......+.
T Consensus 334 ~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~spdg~~l~~~s~~~~---~~~l~~~d~~g~~~~~l~ 394 (415)
T 2hqs_A 334 QQHIAKQDLATGGVQVLSST-----FLDETPSLAPNGTMVIYSSSQGM---GSVLNLVSTDGRFKARLP 394 (415)
T ss_dssp CEEEEEEETTTCCEEECCCS-----SSCEEEEECTTSSEEEEEEEETT---EEEEEEEETTSCCEEECC
T ss_pred ceEEEEEECCCCCEEEecCC-----CCcCCeEEcCCCCEEEEEEcCCC---ccEEEEEECCCCcEEEee
Confidence 24699999999888765431 11222222235566666665332 236999999887766653
No 50
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=95.99 E-value=0.91 Score=45.18 Aligned_cols=227 Identities=12% Similarity=0.053 Sum_probs=109.4
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEE
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILD 116 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD 116 (578)
++.+..+..+++.|+.+ ..+.++|+.+.+-...-..+ +. .....+..-+++.++.|+.+ ..+.+||
T Consensus 85 ~~~~~~~~~~l~s~s~D------~~i~lWd~~~~~~~~~~~~~--~~-~~~~~~~spdg~~l~~g~~d-----g~v~i~~ 150 (321)
T 3ow8_A 85 SVDISHTLPIAASSSLD------AHIRLWDLENGKQIKSIDAG--PV-DAWTLAFSPDSQYLATGTHV-----GKVNIFG 150 (321)
T ss_dssp EEEECSSSSEEEEEETT------SEEEEEETTTTEEEEEEECC--TT-CCCCEEECTTSSEEEEECTT-----SEEEEEE
T ss_pred EEEECCCCCEEEEEeCC------CcEEEEECCCCCEEEEEeCC--Cc-cEEEEEECCCCCEEEEEcCC-----CcEEEEE
Confidence 33343333355555543 35888998877644321111 11 11111222256677777654 3578888
Q ss_pred CCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCcee
Q 008089 117 TSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT 195 (578)
Q Consensus 117 ~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~ 195 (578)
..+.+-...- . .....-.+++.. ++++++.|+. ...+.+||+.+.+-...-. . ........
T Consensus 151 ~~~~~~~~~~-~---~~~~~v~~~~~spdg~~lasg~~-----------dg~i~iwd~~~~~~~~~~~--~-h~~~v~~l 212 (321)
T 3ow8_A 151 VESGKKEYSL-D---TRGKFILSIAYSPDGKYLASGAI-----------DGIINIFDIATGKLLHTLE--G-HAMPIRSL 212 (321)
T ss_dssp TTTCSEEEEE-E---CSSSCEEEEEECTTSSEEEEEET-----------TSCEEEEETTTTEEEEEEC--C-CSSCCCEE
T ss_pred cCCCceeEEe-c---CCCceEEEEEECCCCCEEEEEcC-----------CCeEEEEECCCCcEEEEEc--c-cCCceeEE
Confidence 8766432211 0 011111222222 4566777773 2457788988765432211 0 01111111
Q ss_pred EEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEEEEE
Q 008089 196 CSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMID 274 (578)
Q Consensus 196 ~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~~yd 274 (578)
+...++.+++.|+.++ .+.+||+.+......-. + ....-.+++.. ++.+++.|+.+. .|.+||
T Consensus 213 ~~spd~~~l~s~s~dg------~i~iwd~~~~~~~~~~~-~---h~~~v~~~~~sp~~~~l~s~s~D~------~v~iwd 276 (321)
T 3ow8_A 213 TFSPDSQLLVTASDDG------YIKIYDVQHANLAGTLS-G---HASWVLNVAFCPDDTHFVSSSSDK------SVKVWD 276 (321)
T ss_dssp EECTTSCEEEEECTTS------CEEEEETTTCCEEEEEC-C---CSSCEEEEEECTTSSEEEEEETTS------CEEEEE
T ss_pred EEcCCCCEEEEEcCCC------eEEEEECCCcceeEEEc-C---CCCceEEEEECCCCCEEEEEeCCC------cEEEEe
Confidence 2223677888887653 38889987765443211 1 11111222222 456777777543 489999
Q ss_pred CCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCC
Q 008089 275 VDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (578)
Q Consensus 275 i~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (578)
+.+..-...... ......+..+ ..++..++.||.+..
T Consensus 277 ~~~~~~~~~~~~-----h~~~v~~v~~--s~~g~~l~s~~~d~~ 313 (321)
T 3ow8_A 277 VGTRTCVHTFFD-----HQDQVWGVKY--NGNGSKIVSVGDDQE 313 (321)
T ss_dssp TTTTEEEEEECC-----CSSCEEEEEE--CTTSSEEEEEETTCC
T ss_pred CCCCEEEEEEcC-----CCCcEEEEEE--CCCCCEEEEEeCCCe
Confidence 988754332211 1112222233 345566677776543
No 51
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=95.97 E-value=1.1 Score=45.02 Aligned_cols=228 Identities=9% Similarity=0.012 Sum_probs=106.4
Q ss_pred EEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCCcEEE
Q 008089 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHI 114 (578)
Q Consensus 36 s~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~ 114 (578)
.++.+..++.+++.|+.+ ..+.+||........+. + . ...-.++... +++.++.|+.++ .+.+
T Consensus 112 ~~~~~s~~~~~l~~~~~d------g~i~i~~~~~~~~~~~~--~-~--~~~v~~~~~~~~~~~l~~~~~d~-----~i~i 175 (425)
T 1r5m_A 112 TCLAWSHDGNSIVTGVEN------GELRLWNKTGALLNVLN--F-H--RAPIVSVKWNKDGTHIISMDVEN-----VTIL 175 (425)
T ss_dssp EEEEECTTSSEEEEEETT------SCEEEEETTSCEEEEEC--C-C--CSCEEEEEECTTSSEEEEEETTC-----CEEE
T ss_pred EEEEEcCCCCEEEEEeCC------CeEEEEeCCCCeeeecc--C-C--CccEEEEEECCCCCEEEEEecCC-----eEEE
Confidence 344454444466667643 35888884444333332 1 1 1111222222 555666666543 4888
Q ss_pred EECCCCeEEecccCCCCC-----------CCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEecc
Q 008089 115 LDTSSHTWISPSVRGEGP-----------EAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATT 183 (578)
Q Consensus 115 yD~~t~~W~~l~~~g~~P-----------~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~ 183 (578)
||+.+.+....-.....+ ....-.+++...+..++.|+. ...+++||+.+..-...-.
T Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~g~i~~~d~~~~~~~~~~~ 244 (425)
T 1r5m_A 176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP-----------KGAIFVYQITEKTPTGKLI 244 (425)
T ss_dssp EETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECG-----------GGCEEEEETTCSSCSEEEC
T ss_pred EECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcC-----------CCeEEEEEcCCCceeeeec
Confidence 998877654321111110 000022333333444666662 3568888987653221110
Q ss_pred CCCCCCCCCceeEEEe-CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccC
Q 008089 184 SGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTD 262 (578)
Q Consensus 184 ~g~~p~~R~~h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~ 262 (578)
.....-.+++.. ++.+++.|+.++ .+.+||+.+......-. .....-.++....+.+++.|+..
T Consensus 245 ----~~~~~i~~~~~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~l~~~~~d- 309 (425)
T 1r5m_A 245 ----GHHGPISVLEFNDTNKLLLSASDDG------TLRIWHGGNGNSQNCFY----GHSQSIVSASWVGDDKVISCSMD- 309 (425)
T ss_dssp ----CCSSCEEEEEEETTTTEEEEEETTS------CEEEECSSSBSCSEEEC----CCSSCEEEEEEETTTEEEEEETT-
T ss_pred ----cCCCceEEEEECCCCCEEEEEcCCC------EEEEEECCCCccceEec----CCCccEEEEEECCCCEEEEEeCC-
Confidence 001111222222 566777776443 37888887654322211 11122233334433366666653
Q ss_pred CCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccC
Q 008089 263 SQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (578)
Q Consensus 263 ~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (578)
..+.+||+.+..-........ .......+ ..++.+++.|+.+.
T Consensus 310 -----~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~--s~~~~~l~~~~~dg 352 (425)
T 1r5m_A 310 -----GSVRLWSLKQNTLLALSIVDG-----VPIFAGRI--SQDGQKYAVAFMDG 352 (425)
T ss_dssp -----SEEEEEETTTTEEEEEEECTT-----CCEEEEEE--CTTSSEEEEEETTS
T ss_pred -----CcEEEEECCCCcEeEecccCC-----ccEEEEEE--cCCCCEEEEEECCC
Confidence 358999998876443332211 11222223 23556666666543
No 52
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.96 E-value=0.5 Score=47.07 Aligned_cols=237 Identities=15% Similarity=0.131 Sum_probs=107.4
Q ss_pred EEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEecc
Q 008089 47 YVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPS 126 (578)
Q Consensus 47 yv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~ 126 (578)
+.+|.+.......-.+|.+|..++++..+........+ ...+..-+++||+.+... .-..+++||+.+.+++.+.
T Consensus 5 ~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p--~~~a~spdg~l~~~~~~~---~~~~v~~~~~~~g~~~~~~ 79 (347)
T 3hfq_A 5 ILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNP--TYLALSAKDCLYSVDKED---DEGGIAAWQIDGQTAHKLN 79 (347)
T ss_dssp EEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCC--CCEEECTTCEEEEEEEET---TEEEEEEEEEETTEEEEEE
T ss_pred EEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCc--ceEEEccCCeEEEEEecC---CCceEEEEEecCCcEEEee
Confidence 34465543322334577888888888765432222111 112222367777775321 1246899999888776544
Q ss_pred cCCCCCCCCcccEEEEE-CC-EEEEEccCCCCCCCCCceeeceEEEEEcC-cceEEEe---ccCCCCCCCCC----ceeE
Q 008089 127 VRGEGPEAREGHSAALV-GK-RLFIFGGCGKSSNTNDEVYYNDLYILNTE-TFVWKRA---TTSGNPPSARD----SHTC 196 (578)
Q Consensus 127 ~~g~~P~~R~~hs~~~~-~~-~lyvfGG~~~~~~~~~~~~~ndv~~yd~~-t~~W~~~---~~~g~~p~~R~----~h~~ 196 (578)
... .....-..+++. ++ .||+.+.. ...+.+|++. +.....+ ...+..|..|. -+.+
T Consensus 80 ~~~--~~~~~p~~~a~spdg~~l~~~~~~-----------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~ 146 (347)
T 3hfq_A 80 TVV--APGTPPAYVAVDEARQLVYSANYH-----------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYT 146 (347)
T ss_dssp EEE--EESCCCSEEEEETTTTEEEEEETT-----------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEE
T ss_pred eee--cCCCCCEEEEECCCCCEEEEEeCC-----------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEE
Confidence 210 001111233333 33 56665531 1346677764 2333322 22222222221 2223
Q ss_pred EE-eCCEEEEEecCCCCCcccCceEEEECC-CCceEEecCCCCCCCCCceeEEEEeCC-EEEEEcCccCCCCccCcEEEE
Q 008089 197 SS-WKNKIIVIGGEDGHDYYLSDVHILDTD-TLTWKELNTSGMVLSPRAGHSTVAFGK-NLFVFGGFTDSQNLYDDLYMI 273 (578)
Q Consensus 197 ~~-~~~~lyV~GG~~~~~~~~~di~~yD~~-t~~W~~v~~~g~~p~~R~~hs~v~~~~-~iyV~GG~~~~~~~~~dv~~y 273 (578)
+. -++++|+.+... +.+++||+. +.....+......+.....+.++.-++ .+|+.+... +.+.+|
T Consensus 147 ~~spdg~l~v~~~~~------~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~------~~v~v~ 214 (347)
T 3hfq_A 147 DLTPDNRLAVIDLGS------DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS------SQIASL 214 (347)
T ss_dssp EECTTSCEEEEETTT------TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT------TEEEEE
T ss_pred EECCCCcEEEEeCCC------CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC------CEEEEE
Confidence 32 256677654322 358888887 555554432100111111122222234 477765432 345566
Q ss_pred ECC--CCcEEEEEeCCCCCCC---ceeeeEeeeeccCCCEEEEEcc
Q 008089 274 DVD--SGLWTKVITTGEGPSA---RFSVAGDCLDPLKGGVLVFIGG 314 (578)
Q Consensus 274 di~--t~~W~~l~~~~~~P~~---r~~~~~~~~~~~~~~~l~v~GG 314 (578)
++. ++.+..+......|.. .....+..+ ...+..||+.+.
T Consensus 215 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~-spdG~~l~v~~~ 259 (347)
T 3hfq_A 215 KYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRL-SHDGHFLYVSNR 259 (347)
T ss_dssp EEETTTTEEEEEEEEESSCTTCCSCCEEEEEEE-CTTSCEEEEEEE
T ss_pred EecCCCCceEEeeeeeecCCCCCCCCcceeEEE-CCCCCEEEEEeC
Confidence 555 5777665443222221 122222333 244556777653
No 53
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=95.89 E-value=0.9 Score=43.00 Aligned_cols=195 Identities=12% Similarity=0.072 Sum_probs=96.8
Q ss_pred ccEEEEEcCC-CcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCccc
Q 008089 60 NQVHVFDTVN-QTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGH 138 (578)
Q Consensus 60 ~~v~~yD~~t-~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 138 (578)
..++++|..+ .+...+. .+. ...........-+++.+++++.... ....+|.++..+.....+... .. ..
T Consensus 62 ~~i~~~d~~~~~~~~~~~-~~~-~~~~~~~~~~spdg~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~----~~--~~ 132 (297)
T 2ojh_A 62 GLLYRLSLAGDPSPEKVD-TGF-ATICNNDHGISPDGALYAISDKVEF-GKSAIYLLPSTGGTPRLMTKN----LP--SY 132 (297)
T ss_dssp TEEEEEESSSCCSCEECC-CTT-CCCBCSCCEECTTSSEEEEEECTTT-SSCEEEEEETTCCCCEECCSS----SS--EE
T ss_pred CeEEEEeCCCCCCceEec-ccc-ccccccceEECCCCCEEEEEEeCCC-CcceEEEEECCCCceEEeecC----CC--cc
Confidence 3699999998 7766543 111 1112222222335565555553222 346799999887665443311 11 22
Q ss_pred EEEEE-CC-EEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEec-CCCCCcc
Q 008089 139 SAALV-GK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGG-EDGHDYY 215 (578)
Q Consensus 139 s~~~~-~~-~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG-~~~~~~~ 215 (578)
..+.. ++ .|++.++.. . ...+|.++..+.....+... + ..........+++.+++++ .++
T Consensus 133 ~~~~spdg~~l~~~~~~~------~---~~~l~~~~~~~~~~~~~~~~---~-~~~~~~~~s~dg~~l~~~~~~~~---- 195 (297)
T 2ojh_A 133 WHGWSPDGKSFTYCGIRD------Q---VFDIYSMDIDSGVETRLTHG---E-GRNDGPDYSPDGRWIYFNSSRTG---- 195 (297)
T ss_dssp EEEECTTSSEEEEEEEET------T---EEEEEEEETTTCCEEECCCS---S-SCEEEEEECTTSSEEEEEECTTS----
T ss_pred ceEECCCCCEEEEEECCC------C---ceEEEEEECCCCcceEcccC---C-CccccceECCCCCEEEEEecCCC----
Confidence 22332 33 455444421 1 23678888887776655421 1 1111111222555444443 232
Q ss_pred cCceEEEECCCCceEEecCCCCCCCCCceeEEEE-eCCEEEEEcCccCCCC-----ccCcEEEEECCCCcEEEEEe
Q 008089 216 LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQN-----LYDDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 216 ~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~-~~~~iyV~GG~~~~~~-----~~~dv~~ydi~t~~W~~l~~ 285 (578)
...+|.+++.+.....+.. .......+.. -+++.+++++...... ....|++||+.+.....+..
T Consensus 196 ~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 266 (297)
T 2ojh_A 196 QMQIWRVRVDGSSVERITD-----SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD 266 (297)
T ss_dssp SCEEEEEETTSSCEEECCC-----CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE
T ss_pred CccEEEECCCCCCcEEEec-----CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec
Confidence 2458888877777666543 1111112222 2455555555432211 12469999999988766653
No 54
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=95.88 E-value=0.54 Score=46.33 Aligned_cols=164 Identities=16% Similarity=0.161 Sum_probs=78.1
Q ss_pred EcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CC-EEEEEcccCCCCCCCcEEEEEC
Q 008089 40 IKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GE-NLYVFGGTDGMNPLRDLHILDT 117 (578)
Q Consensus 40 v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~-kIYv~GG~~~~~~~~~v~~yD~ 117 (578)
+..++.+|+.++. .+.++++|+.+++....-..+. ...-+.++.. ++ .+|+.+..+ ..+++||+
T Consensus 7 ~~~~~~~~v~~~~------~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~~~v~~~~~-----~~i~~~d~ 72 (349)
T 1jmx_B 7 LKAGHEYMIVTNY------PNNLHVVDVASDTVYKSCVMPD---KFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDL 72 (349)
T ss_dssp CCTTCEEEEEEET------TTEEEEEETTTTEEEEEEECSS---CCSSCEEEECTTSSEEEEEETTT-----TEEEEEET
T ss_pred ccCCCEEEEEeCC------CCeEEEEECCCCcEEEEEecCC---CCCCceeEECCCCCEEEEEeCCC-----CcEEEEeC
Confidence 3345678887764 2469999999887654221111 0012233332 34 577776432 46999999
Q ss_pred CCCeEEecccCCCCCC--CCcccEEEEE-CC-EEEEEccCCCCCCCCCcee---eceEEEEEcCcceEEEeccCCCCCCC
Q 008089 118 SSHTWISPSVRGEGPE--AREGHSAALV-GK-RLFIFGGCGKSSNTNDEVY---YNDLYILNTETFVWKRATTSGNPPSA 190 (578)
Q Consensus 118 ~t~~W~~l~~~g~~P~--~R~~hs~~~~-~~-~lyvfGG~~~~~~~~~~~~---~ndv~~yd~~t~~W~~~~~~g~~p~~ 190 (578)
.+.+....-..+..+. ...-+.+++. ++ .||+.+.... .....+ .+.+++||+.+..-.........+
T Consensus 73 ~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~---~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-- 147 (349)
T 1jmx_B 73 DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQ---RLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-- 147 (349)
T ss_dssp TTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEE---ECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC--
T ss_pred CCCcEEEEEEcccccccccccccceEECCCCCEEEEEccccc---ccccccccCCCeEEEEECCCccccceeeeccCC--
Confidence 9887543211111110 1112233333 33 5555442100 000011 257899998874321110000111
Q ss_pred CCceeEEE-eCCEEEEEecCCCCCcccCceEEEECCCCceEE
Q 008089 191 RDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE 231 (578)
Q Consensus 191 R~~h~~~~-~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~ 231 (578)
+...+++. .++++|+.++ +++++|+.+.+...
T Consensus 148 ~~~~~~~~s~dg~l~~~~~---------~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 148 RQVYLMRAADDGSLYVAGP---------DIYKMDVKTGKYTV 180 (349)
T ss_dssp SSCCCEEECTTSCEEEESS---------SEEEECTTTCCEEE
T ss_pred CcccceeECCCCcEEEccC---------cEEEEeCCCCceec
Confidence 22223332 3566777422 38888887766443
No 55
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.79 E-value=1.6 Score=47.72 Aligned_cols=119 Identities=9% Similarity=0.121 Sum_probs=65.6
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEc-CCC--cEEEeeecCC--CCCC---CcceeEEEECCEEEEEcccCCCCCCCcEEE
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDT-VNQ--TWSQPVIKGS--PPTP---RDSHSCTTVGENLYVFGGTDGMNPLRDLHI 114 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~-~t~--~W~~l~~~g~--~P~~---R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~ 114 (578)
++.||+.... .+.++.+|. .++ .|+.-..... .+.. ....+.+..+++||+... -..+++
T Consensus 62 ~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg~l~a 129 (571)
T 2ad6_A 62 GDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------NGHLLA 129 (571)
T ss_dssp TTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSEEEE
T ss_pred CCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC------CCEEEE
Confidence 5578887652 246999999 765 5886221100 0000 112345567899998753 246999
Q ss_pred EECCCC--eEEecccCCCCCCC-CcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcc--eEEEe
Q 008089 115 LDTSSH--TWISPSVRGEGPEA-REGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRA 181 (578)
Q Consensus 115 yD~~t~--~W~~l~~~g~~P~~-R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~--~W~~~ 181 (578)
+|..+. .|+... . ..+.. ....+-++.++.+|+-.+.. .......++.||..+. .|+.-
T Consensus 130 lD~~tG~~~W~~~~-~-~~~~~~~~~~~P~v~~g~v~vg~~~~------~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 130 LDAKTGKINWEVEV-C-DPKVGSTLTQAPFVAKDTVLMGCSGA------ELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EETTTCCEEEEEEC-C-CGGGTCBCCSCCEEETTEEEEECBCG------GGTCCCEEEEEETTTCCEEEEEE
T ss_pred EECCCCCEEEEecC-C-CCCccceeccCCEEECCEEEEEecCC------ccCCCCEEEEEECCCCcEEEEEc
Confidence 999876 486522 1 11100 11223345688887754311 0012356899999865 57654
No 56
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.76 E-value=0.68 Score=48.15 Aligned_cols=223 Identities=9% Similarity=0.011 Sum_probs=112.5
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccE
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHS 139 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs 139 (578)
..++++|.....-..+.... ......+..-+++.+++++.++. ...++++|+.+.+...+.. .+. ...+
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~----~~v~~~~~Spdg~~la~~s~~~~--~~~i~~~d~~tg~~~~l~~---~~~--~~~~ 227 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSP----QPLMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQVAS---FPR--HNGA 227 (415)
T ss_dssp EEEEEEETTSCSCEEEEEES----SCEEEEEECTTSSEEEEEECTTS--SCEEEEEETTTCCEEEEEC---CSS--CEEE
T ss_pred ceEEEEcCCCCCCEEEeCCC----CcceeeEEcCCCCEEEEEEecCC--CcEEEEEECCCCcEEEeec---CCC--cccC
Confidence 57889998765544443111 11111111225555566654432 2579999999887765431 111 1222
Q ss_pred EEEE-CCE-EEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEe--CCEEEEEecCCCCCcc
Q 008089 140 AALV-GKR-LFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYY 215 (578)
Q Consensus 140 ~~~~-~~~-lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~--~~~lyV~GG~~~~~~~ 215 (578)
.+.. +++ |++.+... -...++++|+.+.....+... . .......+ +++.+++++....
T Consensus 228 ~~~spdg~~la~~~~~~---------g~~~i~~~d~~~~~~~~l~~~---~---~~~~~~~~spdg~~l~~~s~~~g--- 289 (415)
T 2hqs_A 228 PAFSPDGSKLAFALSKT---------GSLNLYVMDLASGQIRQVTDG---R---SNNTEPTWFPDSQNLAFTSDQAG--- 289 (415)
T ss_dssp EEECTTSSEEEEEECTT---------SSCEEEEEETTTCCEEECCCC---S---SCEEEEEECTTSSEEEEEECTTS---
T ss_pred EEEcCCCCEEEEEEecC---------CCceEEEEECCCCCEEeCcCC---C---CcccceEECCCCCEEEEEECCCC---
Confidence 2332 344 55444321 124699999998887665421 1 11122222 5665555543222
Q ss_pred cCceEEEECCCCceEEecCCCCCCCCCceeEEEE-eCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCce
Q 008089 216 LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARF 294 (578)
Q Consensus 216 ~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~-~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~ 294 (578)
...++.+|+.+..-..+.. ......+++. -+++.+++++..+. ...|+++|+.+.....+... .
T Consensus 290 ~~~i~~~d~~~~~~~~l~~-----~~~~~~~~~~spdG~~l~~~~~~~g---~~~i~~~d~~~~~~~~l~~~---~---- 354 (415)
T 2hqs_A 290 RPQVYKVNINGGAPQRITW-----EGSQNQDADVSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQVLSST---F---- 354 (415)
T ss_dssp SCEEEEEETTSSCCEECCC-----SSSEEEEEEECTTSSEEEEEEECSS---CEEEEEEETTTCCEEECCCS---S----
T ss_pred CcEEEEEECCCCCEEEEec-----CCCcccCeEECCCCCEEEEEECcCC---ceEEEEEECCCCCEEEecCC---C----
Confidence 2368999998877555432 1122222222 24555555554321 24699999999887654322 1
Q ss_pred eeeEeeeeccCCCEEEEEccccCCCCccCcEEEEecc
Q 008089 295 SVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 331 (578)
Q Consensus 295 ~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~~~ 331 (578)
......+ ..++..+++++.... ...+|.++..
T Consensus 355 ~~~~~~~--spdg~~l~~~s~~~~---~~~l~~~d~~ 386 (415)
T 2hqs_A 355 LDETPSL--APNGTMVIYSSSQGM---GSVLNLVSTD 386 (415)
T ss_dssp SCEEEEE--CTTSSEEEEEEEETT---EEEEEEEETT
T ss_pred CcCCeEE--cCCCCEEEEEEcCCC---ccEEEEEECC
Confidence 1122222 245555555554332 2356766644
No 57
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=95.73 E-value=0.64 Score=45.32 Aligned_cols=199 Identities=12% Similarity=0.016 Sum_probs=96.3
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEE-eeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEE
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQ-PVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLH 113 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~-l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~ 113 (578)
++.+..++.+++.|+ + ..+.+||..+..... +........ ...-.++.. +++.++.|+.+ ..+.
T Consensus 56 ~~~~~~~~~~l~~~~-d------g~i~iw~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-----~~i~ 122 (337)
T 1gxr_A 56 AVTISNPTRHVYTGG-K------GCVKVWDISHPGNKSPVSQLDCLNR-DNYIRSCKLLPDGCTLIVGGEA-----STLS 122 (337)
T ss_dssp EEEECSSSSEEEEEC-B------SEEEEEETTSTTCCSCSEEEECSCT-TSBEEEEEECTTSSEEEEEESS-----SEEE
T ss_pred EEEEecCCcEEEEcC-C------CeEEEEECCCCCceeeeecccccCC-CCcEEEEEEcCCCCEEEEEcCC-----CcEE
Confidence 344443444556665 2 358889987654221 110000011 111222222 45666777654 3589
Q ss_pred EEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCC
Q 008089 114 ILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARD 192 (578)
Q Consensus 114 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~ 192 (578)
+||+.+.+......... . ...-.+++.. ++++++.|+. ...+.+||+.+.+....-. .... .
T Consensus 123 ~~d~~~~~~~~~~~~~~-~-~~~i~~~~~~~~~~~l~~~~~-----------dg~v~~~d~~~~~~~~~~~---~~~~-~ 185 (337)
T 1gxr_A 123 IWDLAAPTPRIKAELTS-S-APACYALAISPDSKVCFSCCS-----------DGNIAVWDLHNQTLVRQFQ---GHTD-G 185 (337)
T ss_dssp EEECCCC--EEEEEEEC-S-SSCEEEEEECTTSSEEEEEET-----------TSCEEEEETTTTEEEEEEC---CCSS-C
T ss_pred EEECCCCCcceeeeccc-C-CCceEEEEECCCCCEEEEEeC-----------CCcEEEEeCCCCceeeeee---cccC-c
Confidence 99998876433221100 0 1111222232 4556666663 2457889988776543321 0111 1
Q ss_pred ceeEEEe-CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEE-eCCEEEEEcCccCCCCccCcE
Q 008089 193 SHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDL 270 (578)
Q Consensus 193 ~h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~-~~~~iyV~GG~~~~~~~~~dv 270 (578)
-.++... ++..++.|+.+ ..+.+||+.+..-..... ....-.++.. -+++++++|+.. ..+
T Consensus 186 i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~~------~~i 248 (337)
T 1gxr_A 186 ASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHD-----FTSQIFSLGYCPTGEWLAVGMES------SNV 248 (337)
T ss_dssp EEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE-----CSSCEEEEEECTTSSEEEEEETT------SCE
T ss_pred eEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeec-----CCCceEEEEECCCCCEEEEEcCC------CcE
Confidence 1222222 56677777643 348899988765433321 1111222332 245667777643 348
Q ss_pred EEEECCCCcEEE
Q 008089 271 YMIDVDSGLWTK 282 (578)
Q Consensus 271 ~~ydi~t~~W~~ 282 (578)
.+||+.+..-..
T Consensus 249 ~~~~~~~~~~~~ 260 (337)
T 1gxr_A 249 EVLHVNKPDKYQ 260 (337)
T ss_dssp EEEETTSSCEEE
T ss_pred EEEECCCCCeEE
Confidence 999998876433
No 58
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.61 E-value=1.8 Score=43.28 Aligned_cols=79 Identities=10% Similarity=0.000 Sum_probs=38.2
Q ss_pred EEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECC-EEEEEcccCCCCCCCcEEEEECCCCeEE
Q 008089 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGE-NLYVFGGTDGMNPLRDLHILDTSSHTWI 123 (578)
Q Consensus 45 ~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-kIYv~GG~~~~~~~~~v~~yD~~t~~W~ 123 (578)
..+++|.+.......-.+|.+|..++++..+... ... ...+.+..-++ .||+.+..+.....-.+|.++..+.+.+
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~--~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVA--NPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECS--CCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCC--CCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 3455677754332223466677788888776532 111 11122222234 4666654321111123455566667776
Q ss_pred ecc
Q 008089 124 SPS 126 (578)
Q Consensus 124 ~l~ 126 (578)
.+.
T Consensus 91 ~~~ 93 (361)
T 3scy_A 91 LLN 93 (361)
T ss_dssp EEE
T ss_pred Eee
Confidence 543
No 59
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=95.61 E-value=1.8 Score=48.49 Aligned_cols=127 Identities=20% Similarity=0.229 Sum_probs=72.1
Q ss_pred eEEEECCEEEEEcccCCCCCCCcEEEEECCCCe--EEecccCCC--CC---CCCcccEEEEECCEEEEEccCCCCCCCCC
Q 008089 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVRGE--GP---EAREGHSAALVGKRLFIFGGCGKSSNTND 161 (578)
Q Consensus 89 s~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~--W~~l~~~g~--~P---~~R~~hs~~~~~~~lyvfGG~~~~~~~~~ 161 (578)
+-++.+++||+.... +.++.+|..+.+ |+....... .+ ......+.++.+++||+...
T Consensus 72 ~P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~--------- 136 (677)
T 1kb0_A 72 TPVVVDGIMYVSASW------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW--------- 136 (677)
T ss_dssp CCEEETTEEEEECGG------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT---------
T ss_pred CCEEECCEEEEECCC------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC---------
Confidence 345679999998752 469999998865 875321100 00 00112345567888888643
Q ss_pred ceeeceEEEEEcCcc--eEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCc--eEEecC
Q 008089 162 EVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNT 234 (578)
Q Consensus 162 ~~~~ndv~~yd~~t~--~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~--W~~v~~ 234 (578)
...++.+|..+. .|+.-.............+.++.++.+|+-.+... ......++.||.++.+ |+.-..
T Consensus 137 ---dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~-~~~~g~v~a~D~~tG~~~W~~~~~ 209 (677)
T 1kb0_A 137 ---DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE-YGVRGYITAYDAETGERKWRWFSV 209 (677)
T ss_dssp ---TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEESS
T ss_pred ---CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccc-cCCCCEEEEEECCCCcEEEEeccC
Confidence 246889998765 48764320111111112233456888877543221 1134569999998764 876543
No 60
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=95.53 E-value=1.8 Score=41.56 Aligned_cols=231 Identities=10% Similarity=0.072 Sum_probs=115.9
Q ss_pred ceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCC-CcceeEEE--ECCEEEEEcccCCCCCCC
Q 008089 34 GHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTP-RDSHSCTT--VGENLYVFGGTDGMNPLR 110 (578)
Q Consensus 34 ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~-R~~hs~~~--~~~kIYv~GG~~~~~~~~ 110 (578)
.-.++++..++.||+.+.. ...+.+||+.......+...+..+.. ..-++++. -++++|+.+... ..
T Consensus 31 ~p~~v~~~~~g~l~v~~~~------~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~----~~ 100 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTN------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP----TH 100 (286)
T ss_dssp CEEEEEECTTCCEEEEEGG------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG----GC
T ss_pred CCceEEECCCCCEEEEECC------CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC----CC
Confidence 3445555444458886542 24589999875544443322211111 12234444 267899886321 14
Q ss_pred cEEEEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCC
Q 008089 111 DLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 189 (578)
Q Consensus 111 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~ 189 (578)
.+.+||........... +....-+.+++. ++++|+.... .+.+++||+.......+...+..
T Consensus 101 ~i~~~d~~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~-----------~~~i~~~~~~g~~~~~~~~~~~~-- 163 (286)
T 1q7f_A 101 QIQIYNQYGQFVRKFGA----TILQHPRGVTVDNKGRIIVVECK-----------VMRVIIFDQNGNVLHKFGCSKHL-- 163 (286)
T ss_dssp EEEEECTTSCEEEEECT----TTCSCEEEEEECTTSCEEEEETT-----------TTEEEEECTTSCEEEEEECTTTC--
T ss_pred EEEEECCCCcEEEEecC----ccCCCceEEEEeCCCCEEEEECC-----------CCEEEEEcCCCCEEEEeCCCCcc--
Confidence 68899965443333221 111112333333 4678887541 24688899876555544321111
Q ss_pred CCCceeEEEe-CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCcc
Q 008089 190 ARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLY 267 (578)
Q Consensus 190 ~R~~h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~ 267 (578)
..-..+++. ++.+||.... .+.|.+||+.......+...+... .-..++.- ++++||......
T Consensus 164 -~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~g~~~---~p~~i~~d~~G~l~v~~~~~~----- 228 (286)
T 1q7f_A 164 -EFPNGVVVNDKQEIFISDNR------AHCVKVFNYEGQYLRQIGGEGITN---YPIGVGINSNGEILIADNHNN----- 228 (286)
T ss_dssp -SSEEEEEECSSSEEEEEEGG------GTEEEEEETTCCEEEEESCTTTSC---SEEEEEECTTCCEEEEECSSS-----
T ss_pred -CCcEEEEECCCCCEEEEECC------CCEEEEEcCCCCEEEEEccCCccC---CCcEEEECCCCCEEEEeCCCC-----
Confidence 111233332 5788887542 345899998766555554322111 11223332 467888764321
Q ss_pred CcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEE
Q 008089 268 DDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFI 312 (578)
Q Consensus 268 ~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~ 312 (578)
..|.+||.....-..+....... ...+.++ ..++.+||.
T Consensus 229 ~~i~~~~~~g~~~~~~~~~~~~~----~~~~i~~--~~~g~l~vs 267 (286)
T 1q7f_A 229 FNLTIFTQDGQLISALESKVKHA----QCFDVAL--MDDGSVVLA 267 (286)
T ss_dssp CEEEEECTTSCEEEEEEESSCCS----CEEEEEE--ETTTEEEEE
T ss_pred EEEEEECCCCCEEEEEcccCCCC----cceeEEE--CCCCcEEEE
Confidence 15899997765544454322111 1112223 236778886
No 61
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=95.53 E-value=1.3 Score=43.87 Aligned_cols=70 Identities=16% Similarity=-0.023 Sum_probs=37.8
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCC--
Q 008089 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS-- 277 (578)
Q Consensus 200 ~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t-- 277 (578)
++.+++.|+.+ ..+.+||+.+.+-...-. .........+..-++.+++.| .+ +.+.+||+.+
T Consensus 213 ~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~-~d------~~i~i~~~~~~~ 276 (372)
T 1k8k_C 213 NGSRVAWVSHD------STVCLADADKKMAVATLA---SETLPLLAVTFITESSLVAAG-HD------CFPVLFTYDSAA 276 (372)
T ss_dssp SSSEEEEEETT------TEEEEEEGGGTTEEEEEE---CSSCCEEEEEEEETTEEEEEE-TT------SSCEEEEEETTT
T ss_pred CCCEEEEEeCC------CEEEEEECCCCceeEEEc---cCCCCeEEEEEecCCCEEEEE-eC------CeEEEEEccCcC
Confidence 55667777644 348889987655332221 111111112223356666555 32 2377888888
Q ss_pred CcEEEEEe
Q 008089 278 GLWTKVIT 285 (578)
Q Consensus 278 ~~W~~l~~ 285 (578)
+.|..+..
T Consensus 277 ~~~~~~~~ 284 (372)
T 1k8k_C 277 GKLSFGGR 284 (372)
T ss_dssp TEEEECCC
T ss_pred ceEEEeec
Confidence 88877643
No 62
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=95.45 E-value=2.2 Score=41.90 Aligned_cols=206 Identities=13% Similarity=0.097 Sum_probs=95.5
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEE
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHI 114 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~ 114 (578)
++.+..++.+++.|+.+ ..+.+||..+.+-...- .+ ....-.++.+ +++.++.|+.+ ..+.+
T Consensus 37 ~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~-~~----h~~~v~~~~~~~~~~~l~s~~~d-----g~i~i 100 (369)
T 3zwl_B 37 QVKYNKEGDLLFSCSKD------SSASVWYSLNGERLGTL-DG----HTGTIWSIDVDCFTKYCVTGSAD-----YSIKL 100 (369)
T ss_dssp EEEECTTSCEEEEEESS------SCEEEEETTTCCEEEEE-CC----CSSCEEEEEECTTSSEEEEEETT-----TEEEE
T ss_pred EEEEcCCCCEEEEEeCC------CEEEEEeCCCchhhhhh-hh----cCCcEEEEEEcCCCCEEEEEeCC-----CeEEE
Confidence 34444344466666643 35889998877654321 11 1111222222 45667777654 35889
Q ss_pred EECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcc----eEEEeccCC----
Q 008089 115 LDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF----VWKRATTSG---- 185 (578)
Q Consensus 115 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~----~W~~~~~~g---- 185 (578)
||+.+.+....-. ....-.+++.. ++..++.++.. .......+.+||+.+. .+.......
T Consensus 101 wd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~------~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~ 169 (369)
T 3zwl_B 101 WDVSNGQCVATWK-----SPVPVKRVEFSPCGNYFLAILDN------VMKNPGSINIYEIERDSATHELTKVSEEPIHKI 169 (369)
T ss_dssp EETTTCCEEEEEE-----CSSCEEEEEECTTSSEEEEEECC------BTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE
T ss_pred EECCCCcEEEEee-----cCCCeEEEEEccCCCEEEEecCC------ccCCCCEEEEEEecCCccceeecccccceeeec
Confidence 9998876543221 11111222222 34455555421 0011245666665433 122111000
Q ss_pred CCCCCCCceeEEEe--CCEEEEEecCCCCCcccCceEEEECCC-CceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCcc
Q 008089 186 NPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDT-LTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFT 261 (578)
Q Consensus 186 ~~p~~R~~h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t-~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~ 261 (578)
..........++.+ ++.+++.|+.+ ..+.+||+.+ ..-..... . ....-.++... ++.+++.|+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~l~~~~~d 239 (369)
T 3zwl_B 170 ITHEGLDAATVAGWSTKGKYIIAGHKD------GKISKYDVSNNYEYVDSID---L-HEKSISDMQFSPDLTYFITSSRD 239 (369)
T ss_dssp ECCTTCCCEEEEEECGGGCEEEEEETT------SEEEEEETTTTTEEEEEEE---C-CSSCEEEEEECTTSSEEEEEETT
T ss_pred cCCcCccceeEEEEcCCCCEEEEEcCC------CEEEEEECCCCcEeEEEEe---c-CCCceeEEEECCCCCEEEEecCC
Confidence 00000001222222 55666777644 3488999887 33222211 0 11112222322 45566666543
Q ss_pred CCCCccCcEEEEECCCCcEEEEEe
Q 008089 262 DSQNLYDDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 262 ~~~~~~~dv~~ydi~t~~W~~l~~ 285 (578)
..+.+||+.+........
T Consensus 240 ------~~i~v~d~~~~~~~~~~~ 257 (369)
T 3zwl_B 240 ------TNSFLVDVSTLQVLKKYE 257 (369)
T ss_dssp ------SEEEEEETTTCCEEEEEE
T ss_pred ------ceEEEEECCCCceeeeec
Confidence 358999999876554433
No 63
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.19 E-value=0.92 Score=46.98 Aligned_cols=174 Identities=13% Similarity=0.188 Sum_probs=89.9
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccE
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHS 139 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs 139 (578)
..+.++|..+.+....- . .....-.+....+..++.|+.++ .+.+||+.+..-..... ..........
T Consensus 193 g~i~vwd~~~~~~~~~~-~----~h~~~v~~l~~~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~--~~~~~~~~v~ 260 (435)
T 1p22_A 193 STVRVWDVNTGEMLNTL-I----HHCEAVLHLRFNNGMMVTCSKDR-----SIAVWDMASPTDITLRR--VLVGHRAAVN 260 (435)
T ss_dssp SCEEEEESSSCCEEEEE-C----CCCSCEEEEECCTTEEEEEETTS-----CEEEEECSSSSCCEEEE--EECCCSSCEE
T ss_pred CeEEEEECCCCcEEEEE-c----CCCCcEEEEEEcCCEEEEeeCCC-----cEEEEeCCCCCCceeee--EecCCCCcEE
Confidence 35888998877654321 1 11222233344556777777653 48888887654211000 0001111222
Q ss_pred EEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCce
Q 008089 140 AALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDV 219 (578)
Q Consensus 140 ~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di 219 (578)
++..++..++.|+. ...+.+||+.+..-...-. .......+..+++.+++.|+.++ .+
T Consensus 261 ~~~~~~~~l~s~~~-----------dg~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~g~~dg------~i 318 (435)
T 1p22_A 261 VVDFDDKYIVSASG-----------DRTIKVWNTSTCEFVRTLN-----GHKRGIACLQYRDRLVVSGSSDN------TI 318 (435)
T ss_dssp EEEEETTEEEEEET-----------TSEEEEEETTTCCEEEEEE-----CCSSCEEEEEEETTEEEEEETTS------CE
T ss_pred EEEeCCCEEEEEeC-----------CCeEEEEECCcCcEEEEEc-----CCCCcEEEEEeCCCEEEEEeCCC------eE
Confidence 23335555666662 2457888988765432211 01112234444667777777543 48
Q ss_pred EEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCC
Q 008089 220 HILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (578)
Q Consensus 220 ~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~ 278 (578)
.+||+.+..-...-. .....-.++.+++..++.|+.++ .|.+||+.+.
T Consensus 319 ~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~l~sg~~dg------~i~vwd~~~~ 366 (435)
T 1p22_A 319 RLWDIECGACLRVLE-----GHEELVRCIRFDNKRIVSGAYDG------KIKVWDLVAA 366 (435)
T ss_dssp EEEETTTCCEEEEEC-----CCSSCEEEEECCSSEEEEEETTS------CEEEEEHHHH
T ss_pred EEEECCCCCEEEEEe-----CCcCcEEEEEecCCEEEEEeCCC------cEEEEECCCC
Confidence 899988764332211 11112234445777788887643 4888887654
No 64
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=95.18 E-value=0.95 Score=44.27 Aligned_cols=238 Identities=11% Similarity=0.080 Sum_probs=107.4
Q ss_pred EEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEEC
Q 008089 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDT 117 (578)
Q Consensus 38 v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~ 117 (578)
+.+..++.+++.|+.+ ..+..++........... ..............+..++.|+.++ .+.++|.
T Consensus 92 ~~~s~dg~~l~s~~~d------~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~s~d~-----~~~~~d~ 157 (340)
T 4aow_A 92 VVISSDGQFALSGSWD------GTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQIVSGSRDK-----TIKLWNT 157 (340)
T ss_dssp EEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE---CCSSCEEEEEECTTSSCEEEEETTS-----CEEEECT
T ss_pred EEECCCCCEEEEEccc------ccceEEeecccceeeeec---CCCCceeEEEEeecCccceeecCCC-----eEEEEEe
Confidence 3343333355556543 246777777665544221 1111111111222445666666543 3667776
Q ss_pred CCCeEEecccCCCCCCCCcccEEEEE---C-CEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCc
Q 008089 118 SSHTWISPSVRGEGPEAREGHSAALV---G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (578)
Q Consensus 118 ~t~~W~~l~~~g~~P~~R~~hs~~~~---~-~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~ 193 (578)
....-......+ .......+.+ . +.+++.||. ...+.++|+.+......-. . .. ..-
T Consensus 158 ~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~s~~~-----------d~~i~i~d~~~~~~~~~~~--~-h~-~~v 218 (340)
T 4aow_A 158 LGVCKYTVQDES----HSEWVSCVRFSPNSSNPIIVSCGW-----------DKLVKVWNLANCKLKTNHI--G-HT-GYL 218 (340)
T ss_dssp TSCEEEEECSSS----CSSCEEEEEECSCSSSCEEEEEET-----------TSCEEEEETTTTEEEEEEC--C-CS-SCE
T ss_pred CCCceEEEEecc----ccCcccceEEccCCCCcEEEEEcC-----------CCEEEEEECCCCceeeEec--C-CC-CcE
Confidence 654332222111 1111122222 1 245555662 1346788888766543321 0 01 111
Q ss_pred eeEEE-eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEE
Q 008089 194 HTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYM 272 (578)
Q Consensus 194 h~~~~-~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ 272 (578)
.+++. .++.+++.|+.++ .+.+||+.+..-..... ....-.+++...+..++.++.+ ..+.+
T Consensus 219 ~~~~~s~~~~~l~s~s~Dg------~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~d------~~i~i 281 (340)
T 4aow_A 219 NTVTVSPDGSLCASGGKDG------QAMLWDLNEGKHLYTLD-----GGDIINALCFSPNRYWLCAATG------PSIKI 281 (340)
T ss_dssp EEEEECTTSSEEEEEETTC------EEEEEETTTTEEEEEEE-----CSSCEEEEEECSSSSEEEEEET------TEEEE
T ss_pred EEEEECCCCCEEEEEeCCC------eEEEEEeccCceeeeec-----CCceEEeeecCCCCceeeccCC------CEEEE
Confidence 12222 2567788887653 47888987654332221 1112223334455556666643 34888
Q ss_pred EECCCCcEEEEEeCCCCC----CCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEecc
Q 008089 273 IDVDSGLWTKVITTGEGP----SARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 331 (578)
Q Consensus 273 ydi~t~~W~~l~~~~~~P----~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~~~ 331 (578)
||+++..-.......... .......+.++ ..++.+++.||.+... -+|.+.++
T Consensus 282 wd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--s~dg~~l~sgs~Dg~v----~iW~~~tG 338 (340)
T 4aow_A 282 WDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW--SADGQTLFAGYTDNLV----RVWQVTIG 338 (340)
T ss_dssp EETTTTEEEEEECCC-------CCCCCEEEEEE--CTTSSEEEEEETTSCE----EEEEEEC-
T ss_pred EECCCCeEEEeccccceeeeccCCCCCEEEEEE--CCCCCEEEEEeCCCEE----EEEeCCCc
Confidence 998877543322111100 11111222222 3456677778776531 35655544
No 65
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.11 E-value=2.7 Score=40.93 Aligned_cols=208 Identities=11% Similarity=0.033 Sum_probs=93.8
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcC--CCcEEEeeecCCCCCCCcceeEEEE-CC-EEEEEcccCCCCCCCcE
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTV--NQTWSQPVIKGSPPTPRDSHSCTTV-GE-NLYVFGGTDGMNPLRDL 112 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~--t~~W~~l~~~g~~P~~R~~hs~~~~-~~-kIYv~GG~~~~~~~~~v 112 (578)
.....+++.||+.+.. . ..+.+|++. ++++..+..... +. .. ..++.. ++ .||+.+..+ ..+
T Consensus 43 ~~~spdg~~l~~~~~~-~-----~~v~~~~~~~~~~~~~~~~~~~~-~~-~~-~~~~~s~dg~~l~~~~~~~-----~~i 108 (343)
T 1ri6_A 43 MVVSPDKRYLYVGVRP-E-----FRVLAYRIAPDDGALTFAAESAL-PG-SL-THISTDHQGQFVFVGSYNA-----GNV 108 (343)
T ss_dssp EEECTTSSEEEEEETT-T-----TEEEEEEECTTTCCEEEEEEEEC-SS-CC-SEEEECTTSSEEEEEETTT-----TEE
T ss_pred EEECCCCCEEEEeecC-C-----CeEEEEEecCCCCceeecccccc-CC-CC-cEEEEcCCCCEEEEEecCC-----CeE
Confidence 3344556666665442 1 357777776 677765432111 11 11 222222 34 466654322 357
Q ss_pred EEEECCCCe-EEecccCCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCc-ceEEEec--cCCC
Q 008089 113 HILDTSSHT-WISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTET-FVWKRAT--TSGN 186 (578)
Q Consensus 113 ~~yD~~t~~-W~~l~~~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t-~~W~~~~--~~g~ 186 (578)
.+||+.... ...+....... .-+.+++. ++.||+.+.. ...+++||+.+ .++..+. .. .
T Consensus 109 ~~~d~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~-----------~~~v~~~d~~~~~~~~~~~~~~~-~ 173 (343)
T 1ri6_A 109 SVTRLEDGLPVGVVDVVEGLD---GCHSANISPDNRTLWVPALK-----------QDRICLFTVSDDGHLVAQDPAEV-T 173 (343)
T ss_dssp EEEEEETTEEEEEEEEECCCT---TBCCCEECTTSSEEEEEEGG-----------GTEEEEEEECTTSCEEEEEEEEE-E
T ss_pred EEEECCCCccccccccccCCC---CceEEEECCCCCEEEEecCC-----------CCEEEEEEecCCCceeeeccccc-c
Confidence 888873222 22222111111 12233333 3467776521 24588889877 6654322 10 0
Q ss_pred CCCCCCceeEEEe-CC-EEEEEecCCCCCcccCceEEEECC--CCceEEecCCCCCCCC----CceeEEEEe--CCEEEE
Q 008089 187 PPSARDSHTCSSW-KN-KIIVIGGEDGHDYYLSDVHILDTD--TLTWKELNTSGMVLSP----RAGHSTVAF--GKNLFV 256 (578)
Q Consensus 187 ~p~~R~~h~~~~~-~~-~lyV~GG~~~~~~~~~di~~yD~~--t~~W~~v~~~g~~p~~----R~~hs~v~~--~~~iyV 256 (578)
.+....-..++.. ++ .+|+.+..+ +.+.+||+. +..+..+......+.. .....++.. +..||+
T Consensus 174 ~~~~~~~~~~~~~pdg~~l~~~~~~~------~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v 247 (343)
T 1ri6_A 174 TVEGAGPRHMVFHPNEQYAYCVNELN------SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYA 247 (343)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTT------TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEE
T ss_pred cCCCCCcceEEECCCCCEEEEEeCCC------CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEE
Confidence 1111111122222 34 466665322 357888874 4555433221112221 111123333 235666
Q ss_pred EcCccCCCCccCcEEEEECC--CCcEEEEEe
Q 008089 257 FGGFTDSQNLYDDLYMIDVD--SGLWTKVIT 285 (578)
Q Consensus 257 ~GG~~~~~~~~~dv~~ydi~--t~~W~~l~~ 285 (578)
.+... +.+.+||+. +..+..+..
T Consensus 248 ~~~~~------~~i~v~d~~~~~~~~~~~~~ 272 (343)
T 1ri6_A 248 CDRTA------SLITVFSVSEDGSVLSKEGF 272 (343)
T ss_dssp EETTT------TEEEEEEECTTSCCEEEEEE
T ss_pred EecCC------CEEEEEEEcCCCCceEEeee
Confidence 55322 358888888 556766654
No 66
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=95.06 E-value=2 Score=42.80 Aligned_cols=178 Identities=15% Similarity=0.143 Sum_probs=86.1
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd 172 (578)
+++ ++.|+.+ ..+.+||+.+.+....- .+. ...-.+++.. ++.+++.|+.+ ..+.++|
T Consensus 154 ~~~-l~s~s~d-----~~i~~wd~~~~~~~~~~-~~h---~~~v~~~~~~~~~~~l~sg~~d-----------~~v~~wd 212 (340)
T 1got_B 154 DNQ-IVTSSGD-----TTCALWDIETGQQTTTF-TGH---TGDVMSLSLAPDTRLFVSGACD-----------ASAKLWD 212 (340)
T ss_dssp TTE-EEEEETT-----SCEEEEETTTTEEEEEE-CCC---SSCEEEEEECTTSSEEEEEETT-----------SCEEEEE
T ss_pred CCc-EEEEECC-----CcEEEEECCCCcEEEEE-cCC---CCceEEEEECCCCCEEEEEeCC-----------CcEEEEE
Confidence 555 4555544 34888999887654321 111 0111222222 45677777732 4577788
Q ss_pred cCcceEEEeccCCCCCCCCCceeEEE-eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-
Q 008089 173 TETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF- 250 (578)
Q Consensus 173 ~~t~~W~~~~~~g~~p~~R~~h~~~~-~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~- 250 (578)
+.+..-...-. . .. ..-.+++. .++.+++.|+.++ .+.+||+.+..-..... ..........+.+
T Consensus 213 ~~~~~~~~~~~--~-h~-~~v~~v~~~p~~~~l~s~s~d~------~v~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s 279 (340)
T 1got_B 213 VREGMCRQTFT--G-HE-SDINAICFFPNGNAFATGSDDA------TCRLFDLRADQELMTYS---HDNIICGITSVSFS 279 (340)
T ss_dssp TTTCSEEEEEC--C-CS-SCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEEC---CTTCCSCEEEEEEC
T ss_pred CCCCeeEEEEc--C-Cc-CCEEEEEEcCCCCEEEEEcCCC------cEEEEECCCCcEEEEEc---cCCcccceEEEEEC
Confidence 87654332210 0 00 01112222 2567777887553 37889987764332211 1111112222222
Q ss_pred -CCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCC
Q 008089 251 -GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (578)
Q Consensus 251 -~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (578)
++++++.|+.+ ..+.+||+.+..-...-.. .........+ ..++.+++.||.+..
T Consensus 280 ~~g~~l~~g~~d------~~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~--s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 280 KSGRLLLAGYDD------FNCNVWDALKADRAGVLAG-----HDNRVSCLGV--TDDGMAVATGSWDSF 335 (340)
T ss_dssp TTSSEEEEEETT------SEEEEEETTTCCEEEEEEC-----CSSCEEEEEE--CTTSSCEEEEETTSC
T ss_pred CCCCEEEEECCC------CeEEEEEcccCcEeeEeec-----CCCcEEEEEE--cCCCCEEEEEcCCcc
Confidence 45677777653 2488999877643222111 1111222222 346667777776543
No 67
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.91 Score=45.79 Aligned_cols=144 Identities=9% Similarity=0.014 Sum_probs=70.3
Q ss_pred CEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEc
Q 008089 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (578)
Q Consensus 95 ~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~ 173 (578)
+..++.|+.+ ..+.+||+.+.+-...- . .....-.+++.. ++.+++.|+. ...+.+||+
T Consensus 217 ~~~~~~~~~~-----g~i~~~d~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~l~~~~~-----------d~~i~i~d~ 276 (425)
T 1r5m_A 217 DDKFVIPGPK-----GAIFVYQITEKTPTGKL-I---GHHGPISVLEFNDTNKLLLSASD-----------DGTLRIWHG 276 (425)
T ss_dssp TTEEEEECGG-----GCEEEEETTCSSCSEEE-C---CCSSCEEEEEEETTTTEEEEEET-----------TSCEEEECS
T ss_pred CCEEEEEcCC-----CeEEEEEcCCCceeeee-c---cCCCceEEEEECCCCCEEEEEcC-----------CCEEEEEEC
Confidence 3446666654 35899998875321110 0 011111233333 4556666662 234778887
Q ss_pred CcceEEEeccCCCCCCCCCceeEEEe-CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-C
Q 008089 174 ETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-G 251 (578)
Q Consensus 174 ~t~~W~~~~~~g~~p~~R~~h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~ 251 (578)
.+......-. .....-.+++.. ++ +++.|+.+ ..+.+||+.+..-..... . ....-.++... +
T Consensus 277 ~~~~~~~~~~----~~~~~i~~~~~~~~~-~l~~~~~d------~~i~i~d~~~~~~~~~~~---~-~~~~i~~~~~s~~ 341 (425)
T 1r5m_A 277 GNGNSQNCFY----GHSQSIVSASWVGDD-KVISCSMD------GSVRLWSLKQNTLLALSI---V-DGVPIFAGRISQD 341 (425)
T ss_dssp SSBSCSEEEC----CCSSCEEEEEEETTT-EEEEEETT------SEEEEEETTTTEEEEEEE---C-TTCCEEEEEECTT
T ss_pred CCCccceEec----CCCccEEEEEECCCC-EEEEEeCC------CcEEEEECCCCcEeEecc---c-CCccEEEEEEcCC
Confidence 7654222110 011111233333 45 66666644 348899987765333222 1 11111222222 4
Q ss_pred CEEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 252 KNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 252 ~~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
+.+++.|+.+ ..|.+||+.+..
T Consensus 342 ~~~l~~~~~d------g~i~i~~~~~~~ 363 (425)
T 1r5m_A 342 GQKYAVAFMD------GQVNVYDLKKLN 363 (425)
T ss_dssp SSEEEEEETT------SCEEEEECHHHH
T ss_pred CCEEEEEECC------CeEEEEECCCCc
Confidence 5677777643 248899988665
No 68
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=94.98 E-value=0.73 Score=52.16 Aligned_cols=181 Identities=9% Similarity=0.021 Sum_probs=98.8
Q ss_pred cEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCccc
Q 008089 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGH 138 (578)
Q Consensus 61 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 138 (578)
-+++||+.+++|.................+... ++.||+-.- . .-+++||+.+.++........++... -.
T Consensus 470 Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-----~Gl~~~~~~~~~~~~~~~~~~l~~~~-i~ 542 (781)
T 3v9f_A 470 GVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF-G-----GGVGIYTPDMQLVRKFNQYEGFCSNT-IN 542 (781)
T ss_dssp EEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES-S-----SCEEEECTTCCEEEEECTTTTCSCSC-EE
T ss_pred ceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc-C-----CCEEEEeCCCCeEEEccCCCCCCCCe-eE
Confidence 489999999888765422111111111112222 566776531 1 24899999999988765322232211 11
Q ss_pred EEEEE-CCEEEEEccCCCCCCCCCceeeceE-EEEEcCcceEEEeccCCCCCCCCCceeEEEe-CCEEEEEecCCCCCcc
Q 008089 139 SAALV-GKRLFIFGGCGKSSNTNDEVYYNDL-YILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYY 215 (578)
Q Consensus 139 s~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv-~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~-~~~lyV~GG~~~~~~~ 215 (578)
+++.. ++.|++-.. +.+ ++||+.+.+++.......+|.... .+++.- ++.|++.+.
T Consensus 543 ~i~~d~~g~lWi~T~-------------~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~------- 601 (781)
T 3v9f_A 543 QIYRSSKGQMWLATG-------------EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN------- 601 (781)
T ss_dssp EEEECTTSCEEEEET-------------TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS-------
T ss_pred EEEECCCCCEEEEEC-------------CCceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC-------
Confidence 22221 356666422 345 888998888877654323333322 333332 577877532
Q ss_pred cCceEEEECCCCceEEecCCCCCCCCCce-eEEEEeCCEEEEEcCccCCCCccCcEEEEECCC
Q 008089 216 LSDVHILDTDTLTWKELNTSGMVLSPRAG-HSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (578)
Q Consensus 216 ~~di~~yD~~t~~W~~v~~~g~~p~~R~~-hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t 277 (578)
+.+.+||+++.+++......-++..... .+++...+..+.|||.. .+.+||++.
T Consensus 602 -~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~-------Gl~~f~p~~ 656 (781)
T 3v9f_A 602 -TGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSIN-------GLCFFNPDI 656 (781)
T ss_dssp -SCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEETT-------EEEEECSCC
T ss_pred -CceEEEECCCCceEEecccCCccccccccCceEECCCCEEEEECCC-------ceEEEChhh
Confidence 2388999999988887543223433332 33444444455567653 377888765
No 69
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.95 E-value=0.88 Score=51.00 Aligned_cols=198 Identities=10% Similarity=-0.000 Sum_probs=98.3
Q ss_pred EEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEE
Q 008089 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHIL 115 (578)
Q Consensus 36 s~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~y 115 (578)
.++.+..++.++++|+.+ +.+.+||..++.....- .+ ........+..-+++.+++|+.+ ..+.+|
T Consensus 17 ~~i~~sp~~~~la~~~~~------g~v~iwd~~~~~~~~~~-~~--~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vw 82 (814)
T 3mkq_A 17 KGIDFHPTEPWVLTTLYS------GRVEIWNYETQVEVRSI-QV--TETPVRAGKFIARKNWIIVGSDD-----FRIRVF 82 (814)
T ss_dssp EEEEECSSSSEEEEEETT------SEEEEEETTTTEEEEEE-EC--CSSCEEEEEEEGGGTEEEEEETT-----SEEEEE
T ss_pred EEEEECCCCCEEEEEeCC------CEEEEEECCCCceEEEE-ec--CCCcEEEEEEeCCCCEEEEEeCC-----CeEEEE
Confidence 344454444466666632 46899999887654422 11 11111112222255667777654 358999
Q ss_pred ECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcc-eEEEeccCCCCCCCCCc
Q 008089 116 DTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWKRATTSGNPPSARDS 193 (578)
Q Consensus 116 D~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~-~W~~~~~~g~~p~~R~~ 193 (578)
|..+.+....- .+ ....-.+++.. ++..++.|+. ...+.+||+.+. .....-. . ....-
T Consensus 83 ~~~~~~~~~~~-~~---~~~~v~~~~~s~~~~~l~~~~~-----------dg~i~vw~~~~~~~~~~~~~--~--~~~~v 143 (814)
T 3mkq_A 83 NYNTGEKVVDF-EA---HPDYIRSIAVHPTKPYVLSGSD-----------DLTVKLWNWENNWALEQTFE--G--HEHFV 143 (814)
T ss_dssp ETTTCCEEEEE-EC---CSSCEEEEEECSSSSEEEEEET-----------TSEEEEEEGGGTSEEEEEEE--C--CSSCE
T ss_pred ECCCCcEEEEE-ec---CCCCEEEEEEeCCCCEEEEEcC-----------CCEEEEEECCCCceEEEEEc--C--CCCcE
Confidence 99887764321 11 11111222222 3445556662 245778888765 3332211 0 01111
Q ss_pred eeEEEe--CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe---CCEEEEEcCccCCCCccC
Q 008089 194 HTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF---GKNLFVFGGFTDSQNLYD 268 (578)
Q Consensus 194 h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~---~~~iyV~GG~~~~~~~~~ 268 (578)
.+++.. ++.+++.|+.++ .+.+||+.+..-..... .........+... ++.+++.|+.+.
T Consensus 144 ~~~~~~p~~~~~l~~~~~dg------~v~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg------ 208 (814)
T 3mkq_A 144 MCVAFNPKDPSTFASGCLDR------TVKVWSLGQSTPNFTLT---TGQERGVNYVDYYPLPDKPYMITASDDL------ 208 (814)
T ss_dssp EEEEEETTEEEEEEEEETTS------EEEEEETTCSSCSEEEE---CCCTTCCCEEEECCSTTCCEEEEECTTS------
T ss_pred EEEEEEcCCCCEEEEEeCCC------eEEEEECCCCcceeEEe---cCCCCCEEEEEEEECCCCCEEEEEeCCC------
Confidence 222222 456777777543 48889986543222211 1111111222222 566777777532
Q ss_pred cEEEEECCCCcEE
Q 008089 269 DLYMIDVDSGLWT 281 (578)
Q Consensus 269 dv~~ydi~t~~W~ 281 (578)
.+.+||+.+..-.
T Consensus 209 ~i~~~d~~~~~~~ 221 (814)
T 3mkq_A 209 TIKIWDYQTKSCV 221 (814)
T ss_dssp EEEEEETTTTEEE
T ss_pred EEEEEECCCCcEE
Confidence 4899999887643
No 70
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=94.75 E-value=0.25 Score=55.88 Aligned_cols=192 Identities=10% Similarity=0.020 Sum_probs=94.8
Q ss_pred CEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--C--CEEEEEcccCCCCCCCcEEEEECCC
Q 008089 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--G--ENLYVFGGTDGMNPLRDLHILDTSS 119 (578)
Q Consensus 44 ~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~--~kIYv~GG~~~~~~~~~v~~yD~~t 119 (578)
+.+++.||.+ ..+.+||....++..+..... ....-.++.+ + +.+++.|+.++ .+.+||+.+
T Consensus 21 g~~latg~~d------g~I~vwd~~~~~~~~~~~l~~---h~~~V~~l~~s~~~~~~~l~s~s~Dg-----~I~vwd~~~ 86 (753)
T 3jro_A 21 GKRLATCSSD------KTIKIFEVEGETHKLIDTLTG---HEGPVWRVDWAHPKFGTILASCSYDG-----KVLIWKEEN 86 (753)
T ss_dssp SCCEEEEETT------TEEEEEEEETTEEEEEEEECC---CSSCEEEEEECCTTSCSEEEEEETTS-----CEEEEEEET
T ss_pred CCeEEEEECC------CcEEEEecCCCCCccceeccC---CcCceEEEEecCCCCCCEEEEEeCCC-----eEEEEECCC
Confidence 3456666643 358888888777765432211 1222222232 3 66777787654 488899988
Q ss_pred CeEEecccCCCCCCCCcccEEEEE-C--CEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeE
Q 008089 120 HTWISPSVRGEGPEAREGHSAALV-G--KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTC 196 (578)
Q Consensus 120 ~~W~~l~~~g~~P~~R~~hs~~~~-~--~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~ 196 (578)
.+|..+..... ....-.+++.. + +.+++.|+. ...+.+||+.+..-.........+. .-.++
T Consensus 87 ~~~~~~~~~~~--h~~~V~~v~~sp~~~~~~l~sgs~-----------dg~I~vwdl~~~~~~~~~~~~~~~~--~v~~l 151 (753)
T 3jro_A 87 GRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASS-----------DGKVSVVEFKENGTTSPIIIDAHAI--GVNSA 151 (753)
T ss_dssp TEEEEEEEECC--CSSCEEEEEECCGGGCSEEEEEET-----------TSEEEEEECCSSSCCCCEEEECCSS--CEEEE
T ss_pred CcccccccccC--CCCCeEEEEECCCCCCCEEEEEeC-----------CCcEEEEEeecCCCcceeEeecCCC--ceEEE
Confidence 88765442211 11111222222 2 567777773 2356777776542111000000000 01111
Q ss_pred EEe--------------CCEEEEEecCCCCCcccCceEEEECCCC--ceEEecCCCCCCCCCceeEEEEe-C---CEEEE
Q 008089 197 SSW--------------KNKIIVIGGEDGHDYYLSDVHILDTDTL--TWKELNTSGMVLSPRAGHSTVAF-G---KNLFV 256 (578)
Q Consensus 197 ~~~--------------~~~lyV~GG~~~~~~~~~di~~yD~~t~--~W~~v~~~g~~p~~R~~hs~v~~-~---~~iyV 256 (578)
... ++.+++.|+.++. +.+||..+. .+..+... ......-.+++.. + +.+++
T Consensus 152 ~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~------I~iwd~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~~~l~ 223 (753)
T 3jro_A 152 SWAPATIEEDGEHNGTKESRKFVTGGADNL------VKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYLA 223 (753)
T ss_dssp EECCCC---------CGGGCCEEEEETTSC------EEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEE
T ss_pred EecCcccccccccccCCCCCEEEEEECCCe------EEEEeccCCcccceeeeee--cCCCCcEEEEEeccCCCCCCEEE
Confidence 111 3567777776533 777776543 34433320 0111112223322 3 57888
Q ss_pred EcCccCCCCccCcEEEEECCCC
Q 008089 257 FGGFTDSQNLYDDLYMIDVDSG 278 (578)
Q Consensus 257 ~GG~~~~~~~~~dv~~ydi~t~ 278 (578)
.||.++ .|.+||+.+.
T Consensus 224 s~s~Dg------~I~iwd~~~~ 239 (753)
T 3jro_A 224 SVSQDR------TCIIWTQDNE 239 (753)
T ss_dssp EEESSS------CEEEEEESSS
T ss_pred EEecCC------EEEEecCCCC
Confidence 887643 3888888875
No 71
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=94.74 E-value=5.6 Score=44.92 Aligned_cols=186 Identities=13% Similarity=0.138 Sum_probs=100.5
Q ss_pred cEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEE
Q 008089 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSA 140 (578)
Q Consensus 61 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~ 140 (578)
.+++||..+.++.........+......-+..-++.||+... +.+++||..+.++..... ..+....-.++
T Consensus 108 Gl~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lwi~t~-------~gl~~~~~~~~~~~~~~~--~~~~~~~i~~i 178 (795)
T 4a2l_A 108 GLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLISTP-------EGLIMFDIKESKFIDDSF--STAMHKTIAST 178 (795)
T ss_dssp CEEEEETTTTEEEEECCEETTEECCCCEEEEEETTEEEEEET-------TEEEEEETTTTEEECSSS--CHHHHTCCEEE
T ss_pred chheeCCCCCeEEeccccccCCCceEEEEEECCCCCEEEEEC-------CceEEEECCCCEEEeccC--CCCCCcceEEE
Confidence 489999998888765321111000011122233778887542 359999999988876431 11111101122
Q ss_pred EE-ECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEE-eCCEEEEEecCCCCCcccCc
Q 008089 141 AL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSD 218 (578)
Q Consensus 141 ~~-~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~-~~~~lyV~GG~~~~~~~~~d 218 (578)
+. .++.|||... ...+++||+.+.++...... +....-.++.. .++.|+|-. . .+.
T Consensus 179 ~~d~~g~lwigt~------------~~Gl~~~~~~~~~~~~~~~~---~~~~~i~~i~~d~~g~lwigt-~------~~G 236 (795)
T 4a2l_A 179 LYRQGDQIYIGTS------------TDGLYTYSITQKTFEKVIPI---LGTKQIQAILQQSPTRIWVAT-E------GAG 236 (795)
T ss_dssp EEEETTEEEEEES------------SSCEEEEETTTCCEEECC-------CCCEEEEEEEETTEEEEEE-B------SSC
T ss_pred EECCCCCEEEEEC------------CCCEEEEeCCCCeEEEecCC---CCCCeeEEEEEcCCCCEEEEE-C------CCC
Confidence 22 3678888321 13588999999888776321 11111222222 367777732 1 123
Q ss_pred eEEEECCCCceEEecCCCCCCC---CCceeEEEEe-CCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEe
Q 008089 219 VHILDTDTLTWKELNTSGMVLS---PRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 219 i~~yD~~t~~W~~v~~~g~~p~---~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~ 285 (578)
+++||+.+.++.........+. ...-.+++.. ++.|+| |.. +.+++||+.+..+..+..
T Consensus 237 l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~-------~Gl~~~~~~~~~~~~~~~ 299 (795)
T 4a2l_A 237 LFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTF-------NDLNIYHEGTDSFASYSS 299 (795)
T ss_dssp EEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EES-------SCEEEEETTTTEEEEECC
T ss_pred eEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeC-------ChhheEcCCCCeEEEEec
Confidence 8899999988887754211111 1222223332 355665 332 138999999999988754
No 72
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=94.73 E-value=2.5 Score=41.84 Aligned_cols=178 Identities=14% Similarity=0.087 Sum_probs=88.6
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd 172 (578)
++.+++.|+.++ .+.++|+.+.+-...-..+ +. .-.+++.. +++.++.|+. ...+.+||
T Consensus 91 ~~~~l~s~s~D~-----~i~lWd~~~~~~~~~~~~~--~~--~~~~~~~spdg~~l~~g~~-----------dg~v~i~~ 150 (321)
T 3ow8_A 91 TLPIAASSSLDA-----HIRLWDLENGKQIKSIDAG--PV--DAWTLAFSPDSQYLATGTH-----------VGKVNIFG 150 (321)
T ss_dssp SSSEEEEEETTS-----EEEEEETTTTEEEEEEECC--TT--CCCCEEECTTSSEEEEECT-----------TSEEEEEE
T ss_pred CCCEEEEEeCCC-----cEEEEECCCCCEEEEEeCC--Cc--cEEEEEECCCCCEEEEEcC-----------CCcEEEEE
Confidence 445667776653 5888898887653321111 11 11122322 4566666763 24567788
Q ss_pred cCcceEEEeccCCCCCCCCCceeEEE-eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEE-e
Q 008089 173 TETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-F 250 (578)
Q Consensus 173 ~~t~~W~~~~~~g~~p~~R~~h~~~~-~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~-~ 250 (578)
..+..-...-. .....-.+++. .++++++.|+.++ .+.+||+.+.+-...-. + ....-.+++. -
T Consensus 151 ~~~~~~~~~~~----~~~~~v~~~~~spdg~~lasg~~dg------~i~iwd~~~~~~~~~~~-~---h~~~v~~l~~sp 216 (321)
T 3ow8_A 151 VESGKKEYSLD----TRGKFILSIAYSPDGKYLASGAIDG------IINIFDIATGKLLHTLE-G---HAMPIRSLTFSP 216 (321)
T ss_dssp TTTCSEEEEEE----CSSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEEC-C---CSSCCCEEEECT
T ss_pred cCCCceeEEec----CCCceEEEEEECCCCCEEEEEcCCC------eEEEEECCCCcEEEEEc-c---cCCceeEEEEcC
Confidence 77654322211 00111112222 2677778887653 38889998765432211 1 0111112222 2
Q ss_pred CCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCC
Q 008089 251 GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (578)
Q Consensus 251 ~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (578)
++++++.|+.+. .|.+||+.+......-.. .........+ ..++.+++.|+.+..
T Consensus 217 d~~~l~s~s~dg------~i~iwd~~~~~~~~~~~~-----h~~~v~~~~~--sp~~~~l~s~s~D~~ 271 (321)
T 3ow8_A 217 DSQLLVTASDDG------YIKIYDVQHANLAGTLSG-----HASWVLNVAF--CPDDTHFVSSSSDKS 271 (321)
T ss_dssp TSCEEEEECTTS------CEEEEETTTCCEEEEECC-----CSSCEEEEEE--CTTSSEEEEEETTSC
T ss_pred CCCEEEEEcCCC------eEEEEECCCcceeEEEcC-----CCCceEEEEE--CCCCCEEEEEeCCCc
Confidence 566777777643 389999988765433211 1111222223 335566777776543
No 73
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=94.65 E-value=3.6 Score=40.14 Aligned_cols=200 Identities=9% Similarity=-0.019 Sum_probs=95.7
Q ss_pred EEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcE-EEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEE
Q 008089 39 AIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTW-SQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHIL 115 (578)
Q Consensus 39 ~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W-~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~y 115 (578)
.-.+++.||+.+..+ +.++++|+.+.+. ......+..| .++++.. +..+| .+...+ ....+++|
T Consensus 47 ~s~dg~~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~----~~~~~~s~dg~~l~-~~~~~~--~~~~i~v~ 113 (331)
T 3u4y_A 47 ITSDCSNVVVTSDFC------QTLVQIETQLEPPKVVAIQEGQSS----MADVDITPDDQFAV-TVTGLN--HPFNMQSY 113 (331)
T ss_dssp ECSSSCEEEEEESTT------CEEEEEECSSSSCEEEEEEECSSC----CCCEEECTTSSEEE-ECCCSS--SSCEEEEE
T ss_pred EcCCCCEEEEEeCCC------CeEEEEECCCCceeEEecccCCCC----ccceEECCCCCEEE-EecCCC--CcccEEEE
Confidence 334566677766522 3699999988774 3221122211 2212222 34566 433221 11279999
Q ss_pred ECCCCeEEecccCCCCCCCCcccEEEEE-CC-EEEEEccCCCCCCCCCceeece-EEEEEcCcce-EEEeccCCCCCCCC
Q 008089 116 DTSSHTWISPSVRGEGPEAREGHSAALV-GK-RLFIFGGCGKSSNTNDEVYYND-LYILNTETFV-WKRATTSGNPPSAR 191 (578)
Q Consensus 116 D~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~-~lyvfGG~~~~~~~~~~~~~nd-v~~yd~~t~~-W~~~~~~g~~p~~R 191 (578)
|+.+.+....-..+ ...+.+++. ++ .+|+.+.. .+. +++|++.... ....... ..+...
T Consensus 114 d~~~~~~~~~~~~~-----~~~~~~~~spdg~~l~~~~~~-----------~~~~i~~~~~~~~g~~~~~~~~-~~~~~~ 176 (331)
T 3u4y_A 114 SFLKNKFISTIPIP-----YDAVGIAISPNGNGLILIDRS-----------SANTVRRFKIDADGVLFDTGQE-FISGGT 176 (331)
T ss_dssp ETTTTEEEEEEECC-----TTEEEEEECTTSSCEEEEEET-----------TTTEEEEEEECTTCCEEEEEEE-EECSSS
T ss_pred ECCCCCeEEEEECC-----CCccceEECCCCCEEEEEecC-----------CCceEEEEEECCCCcEeecCCc-cccCCC
Confidence 99988765432111 112344444 33 57776552 123 5555544211 1000000 001111
Q ss_pred CceeEEEe-CC-EEEEEecCCCCCcccCceEEEECCCCce---EEecCCCCCCCCCceeEEEEe-CC-EEEEEcCccCCC
Q 008089 192 DSHTCSSW-KN-KIIVIGGEDGHDYYLSDVHILDTDTLTW---KELNTSGMVLSPRAGHSTVAF-GK-NLFVFGGFTDSQ 264 (578)
Q Consensus 192 ~~h~~~~~-~~-~lyV~GG~~~~~~~~~di~~yD~~t~~W---~~v~~~g~~p~~R~~hs~v~~-~~-~iyV~GG~~~~~ 264 (578)
.-..++.. ++ .+|+.+.. .+.+.+||+.+.+. ...-..+ ..-..++.. ++ .+|+....
T Consensus 177 ~~~~~~~spdg~~l~v~~~~------~~~v~v~d~~~~~~~~~~~~~~~~-----~~~~~~~~spdg~~l~v~~~~---- 241 (331)
T 3u4y_A 177 RPFNITFTPDGNFAFVANLI------GNSIGILETQNPENITLLNAVGTN-----NLPGTIVVSRDGSTVYVLTES---- 241 (331)
T ss_dssp SEEEEEECTTSSEEEEEETT------TTEEEEEECSSTTSCEEEEEEECS-----SCCCCEEECTTSSEEEEECSS----
T ss_pred CccceEECCCCCEEEEEeCC------CCeEEEEECCCCcccceeeeccCC-----CCCceEEECCCCCEEEEEEcC----
Confidence 11233332 44 47776532 24589999987765 2221111 111223332 33 46665442
Q ss_pred CccCcEEEEECCCCcEEEEEe
Q 008089 265 NLYDDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 265 ~~~~dv~~ydi~t~~W~~l~~ 285 (578)
.+.+++||+++++...+..
T Consensus 242 --~~~i~~~d~~~~~~~~~~~ 260 (331)
T 3u4y_A 242 --TVDVFNFNQLSGTLSFVKS 260 (331)
T ss_dssp --EEEEEEEETTTTEEEEEEE
T ss_pred --CCEEEEEECCCCceeeecc
Confidence 2348999999998866654
No 74
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=94.63 E-value=1.7 Score=42.41 Aligned_cols=163 Identities=9% Similarity=0.000 Sum_probs=73.7
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCC-CeEEecc--cCCCCCCCCcccEEEEE-C-CEEEEEccCCCCCCCCCceeeceE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSS-HTWISPS--VRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDL 168 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t-~~W~~l~--~~g~~P~~R~~hs~~~~-~-~~lyvfGG~~~~~~~~~~~~~ndv 168 (578)
+..||+.+..+ ..+.+||+.+ .+..... .. ..+....-..++.. + ..+|+.+.. .+.+
T Consensus 140 g~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~pdg~~l~~~~~~-----------~~~i 202 (343)
T 1ri6_A 140 NRTLWVPALKQ-----DRICLFTVSDDGHLVAQDPAEV-TTVEGAGPRHMVFHPNEQYAYCVNEL-----------NSSV 202 (343)
T ss_dssp SSEEEEEEGGG-----TEEEEEEECTTSCEEEEEEEEE-ECSTTCCEEEEEECTTSSEEEEEETT-----------TTEE
T ss_pred CCEEEEecCCC-----CEEEEEEecCCCceeeeccccc-ccCCCCCcceEEECCCCCEEEEEeCC-----------CCEE
Confidence 34577765332 3589999887 6554321 00 01111111123332 2 357776542 2457
Q ss_pred EEEEcC--cceEEEeccCCCCCCC----CCceeEEEe-C-CEEEEEecCCCCCcccCceEEEECC--CCceEEecCCCCC
Q 008089 169 YILNTE--TFVWKRATTSGNPPSA----RDSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTD--TLTWKELNTSGMV 238 (578)
Q Consensus 169 ~~yd~~--t~~W~~~~~~g~~p~~----R~~h~~~~~-~-~~lyV~GG~~~~~~~~~di~~yD~~--t~~W~~v~~~g~~ 238 (578)
.+||+. +..+.........+.. .....++.. + ..||+.+..+ +.+.+||+. +..+..+.. .
T Consensus 203 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~------~~i~v~d~~~~~~~~~~~~~---~ 273 (343)
T 1ri6_A 203 DVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA------SLITVFSVSEDGSVLSKEGF---Q 273 (343)
T ss_dssp EEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT------TEEEEEEECTTSCCEEEEEE---E
T ss_pred EEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC------CEEEEEEEcCCCCceEEeee---e
Confidence 778874 3444322211111211 111122222 3 4566655322 357888876 555665543 1
Q ss_pred CCCCceeEEEEe-CC-EEEEEcCccCCCCccCcEEEEECCCCcEEEEEeC
Q 008089 239 LSPRAGHSTVAF-GK-NLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITT 286 (578)
Q Consensus 239 p~~R~~hs~v~~-~~-~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~ 286 (578)
+....-..++.. ++ .||+.++... .-.+|.+|.+++.++.+...
T Consensus 274 ~~~~~~~~~~~s~dg~~l~~~~~~~~----~v~v~~~d~~~g~~~~~~~~ 319 (343)
T 1ri6_A 274 PTETQPRGFNVDHSGKYLIAAGQKSH----HISVYEIVGEQGLLHEKGRY 319 (343)
T ss_dssp ECSSSCCCEEECTTSSEEEEECTTTC----EEEEEEEETTTTEEEEEEEE
T ss_pred cCCCccceEEECCCCCEEEEecCCCC----eEEEEEEcCCCceeeEcccc
Confidence 111111122222 33 4555443221 11245558888888887653
No 75
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=94.59 E-value=7.1 Score=43.38 Aligned_cols=119 Identities=13% Similarity=0.123 Sum_probs=65.6
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCC--cEEEeeecCCC-----CCCCcceeEEEECCEEEEEcccCCCCCCCcEEEE
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSP-----PTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHIL 115 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~-----P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~y 115 (578)
++.||+... .+.++.+|..++ .|+.-...... .......+.++.+++||+... -..++.+
T Consensus 66 ~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg~l~al 132 (668)
T 1kv9_A 66 DGVIYTSMS-------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL------DGRLIAL 132 (668)
T ss_dssp TTEEEEEEG-------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT------TSEEEEE
T ss_pred CCEEEEECC-------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC------CCEEEEE
Confidence 457888654 246999998876 58762210000 000112334567888888642 1469999
Q ss_pred ECCCCe--EEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcc--eEEEe
Q 008089 116 DTSSHT--WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRA 181 (578)
Q Consensus 116 D~~t~~--W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~--~W~~~ 181 (578)
|..+.+ |+.... ..........+-++.++.+|+-.+.. .......++.||..+. .|+.-
T Consensus 133 D~~tG~~~W~~~~~-~~~~~~~~~~~P~v~~~~v~vg~~~~------~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 133 DAKTGKAIWSQQTT-DPAKPYSITGAPRVVKGKVIIGNGGA------EYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp ETTTCCEEEEEECS-CTTSSCBCCSCCEEETTEEEECCBCT------TTCCBCEEEEEETTTCCEEEEEE
T ss_pred ECCCCCEeeeeccC-CCCCcceecCCCEEECCEEEEeCCCC------CcCCCCEEEEEECCCCcEEEEec
Confidence 998764 875321 11111112223455688887743311 0112457899999875 48764
No 76
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=94.56 E-value=0.41 Score=48.59 Aligned_cols=207 Identities=10% Similarity=0.082 Sum_probs=85.5
Q ss_pred EEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcc-eeEEEE-CCEEEEEcccCCCCCCCcEE
Q 008089 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDS-HSCTTV-GENLYVFGGTDGMNPLRDLH 113 (578)
Q Consensus 36 s~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~-hs~~~~-~~kIYv~GG~~~~~~~~~v~ 113 (578)
.++.+..++.+++.|+.+....-...+++|+..+..-.... .........+ .+++.. +++++ .|+.++ .+.
T Consensus 46 ~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~-~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg-----~v~ 118 (357)
T 4g56_B 46 GAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL-CTAGVQTEAGVTDVAWVSEKGIL-VASDSG-----AVE 118 (357)
T ss_dssp EEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG-CSEEEECSSCEEEEEEETTTEEE-EEETTS-----CEE
T ss_pred EEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE-ecccCCCCCCEEEEEEcCCCCEE-EEECCC-----EEE
Confidence 45555444456666664332111235777776543211100 0000000111 122222 45544 555443 477
Q ss_pred EEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCC
Q 008089 114 ILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARD 192 (578)
Q Consensus 114 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~ 192 (578)
+||+.+.+-..............-.+++.. ++++++.|+. ...+.++|+.+.+....-. .... .
T Consensus 119 lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~-----------dg~v~iwd~~~~~~~~~~~---~h~~-~ 183 (357)
T 4g56_B 119 LWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK-----------DFSVKVWDLSQKAVLKSYN---AHSS-E 183 (357)
T ss_dssp EC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET-----------TSCEEEEETTTTEEEEEEC---CCSS-C
T ss_pred EeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC-----------CCeEEEEECCCCcEEEEEc---CCCC-C
Confidence 888776543221100000000011122222 4566777773 2347788888776443211 0001 1
Q ss_pred ceeEEEe--CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEE-Ee--CCEEEEEcCccCCCCcc
Q 008089 193 SHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV-AF--GKNLFVFGGFTDSQNLY 267 (578)
Q Consensus 193 ~h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v-~~--~~~iyV~GG~~~~~~~~ 267 (578)
-.+++.. ++.+++.||.++ .+.+||+.+.+-..... .........++ .. ++.+++.|+.+.
T Consensus 184 v~~v~~s~~~~~~~~s~~~dg------~v~~wd~~~~~~~~~~~---~~~~~~~v~~v~~sp~~~~~la~g~~d~----- 249 (357)
T 4g56_B 184 VNCVAACPGKDTIFLSCGEDG------RILLWDTRKPKPATRID---FCASDTIPTSVTWHPEKDDTFACGDETG----- 249 (357)
T ss_dssp EEEEEECTTCSSCEEEEETTS------CEEECCTTSSSCBCBCC---CTTCCSCEEEEEECTTSTTEEEEEESSS-----
T ss_pred EEEEEEccCCCceeeeeccCC------ceEEEECCCCceeeeee---eccccccccchhhhhcccceEEEeeccc-----
Confidence 1122222 335677777553 37788887654322211 11111112223 32 356777776542
Q ss_pred CcEEEEECCCCc
Q 008089 268 DDLYMIDVDSGL 279 (578)
Q Consensus 268 ~dv~~ydi~t~~ 279 (578)
.|.+||+.+..
T Consensus 250 -~i~~wd~~~~~ 260 (357)
T 4g56_B 250 -NVSLVNIKNPD 260 (357)
T ss_dssp -CEEEEESSCGG
T ss_pred -ceeEEECCCCc
Confidence 48899988764
No 77
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=94.56 E-value=3.7 Score=39.98 Aligned_cols=193 Identities=9% Similarity=-0.005 Sum_probs=94.8
Q ss_pred cCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEE-ECC-EEEEEcccCCCCCCCcEEEEECC
Q 008089 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGE-NLYVFGGTDGMNPLRDLHILDTS 118 (578)
Q Consensus 41 ~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~-kIYv~GG~~~~~~~~~v~~yD~~ 118 (578)
...+.+|+.++. .+.+.+||+.+++.......+ .....++. -++ .+|+.+..+ +.+++||+.
T Consensus 7 ~~~~~~~v~~~~------~~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~-----~~i~~~d~~ 70 (331)
T 3u4y_A 7 TTSNFGIVVEQH------LRRISFFSTDTLEILNQITLG-----YDFVDTAITSDCSNVVVTSDFC-----QTLVQIETQ 70 (331)
T ss_dssp CCCCEEEEEEGG------GTEEEEEETTTCCEEEEEECC-----CCEEEEEECSSSCEEEEEESTT-----CEEEEEECS
T ss_pred CCCCEEEEEecC------CCeEEEEeCcccceeeeEEcc-----CCcceEEEcCCCCEEEEEeCCC-----CeEEEEECC
Confidence 345677887663 246999999998886543221 11122222 244 577776532 379999998
Q ss_pred CCeE-EecccCCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCcee
Q 008089 119 SHTW-ISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT 195 (578)
Q Consensus 119 t~~W-~~l~~~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~ 195 (578)
+.+. ......+. .+ .+++++. ++.+| .+... . -...++++|+.+.+.......+. ..+.
T Consensus 71 ~~~~~~~~~~~~~--~~--~~~~~~s~dg~~l~-~~~~~------~--~~~~i~v~d~~~~~~~~~~~~~~-----~~~~ 132 (331)
T 3u4y_A 71 LEPPKVVAIQEGQ--SS--MADVDITPDDQFAV-TVTGL------N--HPFNMQSYSFLKNKFISTIPIPY-----DAVG 132 (331)
T ss_dssp SSSCEEEEEEECS--SC--CCCEEECTTSSEEE-ECCCS------S--SSCEEEEEETTTTEEEEEEECCT-----TEEE
T ss_pred CCceeEEecccCC--CC--ccceEECCCCCEEE-EecCC------C--CcccEEEEECCCCCeEEEEECCC-----Cccc
Confidence 8764 22111111 11 1213333 33566 33210 0 01268899998877654432211 1234
Q ss_pred EEEe-CC-EEEEEecCCCCCcccCc-eEEEECCCCc-eEEecCCCCCCCCCceeEEEEe-CC-EEEEEcCccCCCCccCc
Q 008089 196 CSSW-KN-KIIVIGGEDGHDYYLSD-VHILDTDTLT-WKELNTSGMVLSPRAGHSTVAF-GK-NLFVFGGFTDSQNLYDD 269 (578)
Q Consensus 196 ~~~~-~~-~lyV~GG~~~~~~~~~d-i~~yD~~t~~-W~~v~~~g~~p~~R~~hs~v~~-~~-~iyV~GG~~~~~~~~~d 269 (578)
++.. ++ .+|+.+... +. +.+|++.... ...... ...+....-..++.. ++ .+|+.+.. .+.
T Consensus 133 ~~~spdg~~l~~~~~~~------~~~i~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~spdg~~l~v~~~~------~~~ 199 (331)
T 3u4y_A 133 IAISPNGNGLILIDRSS------ANTVRRFKIDADGVLFDTGQ-EFISGGTRPFNITFTPDGNFAFVANLI------GNS 199 (331)
T ss_dssp EEECTTSSCEEEEEETT------TTEEEEEEECTTCCEEEEEE-EEECSSSSEEEEEECTTSSEEEEEETT------TTE
T ss_pred eEECCCCCEEEEEecCC------CceEEEEEECCCCcEeecCC-ccccCCCCccceEECCCCCEEEEEeCC------CCe
Confidence 4433 44 577765432 23 5666654321 111100 001111112233333 33 47776543 245
Q ss_pred EEEEECCCCcE
Q 008089 270 LYMIDVDSGLW 280 (578)
Q Consensus 270 v~~ydi~t~~W 280 (578)
+.+||+.+...
T Consensus 200 v~v~d~~~~~~ 210 (331)
T 3u4y_A 200 IGILETQNPEN 210 (331)
T ss_dssp EEEEECSSTTS
T ss_pred EEEEECCCCcc
Confidence 99999998775
No 78
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=94.51 E-value=3.8 Score=39.93 Aligned_cols=212 Identities=15% Similarity=0.127 Sum_probs=103.5
Q ss_pred EEEEEcCCCCCCCCcccEEEEEcCCCc--EEEeeecCCCCCCCcceeEE-EECCEEEEEcccCCCCCCCcEEEEECCCC-
Q 008089 45 FLYVFGGYGKDNCQTNQVHVFDTVNQT--WSQPVIKGSPPTPRDSHSCT-TVGENLYVFGGTDGMNPLRDLHILDTSSH- 120 (578)
Q Consensus 45 ~Iyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~hs~~-~~~~kIYv~GG~~~~~~~~~v~~yD~~t~- 120 (578)
.+++.|..+ +.++++|..+++ |+... +.....|.+. .-++++|+.+. +.+++||+ +.
T Consensus 6 ~~lv~~~~~------~~v~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~pdG~ilvs~~-------~~V~~~d~-~G~ 66 (276)
T 3no2_A 6 HLLVGGSGW------NKIAIINKDTKEIVWEYPL-----EKGWECNSVAATKAGEILFSYS-------KGAKMITR-DGR 66 (276)
T ss_dssp EEEEECTTC------SEEEEEETTTTEEEEEEEC-----CTTCCCCEEEECTTSCEEEECB-------SEEEEECT-TSC
T ss_pred cEEEeeCCC------CEEEEEECCCCeEEEEeCC-----CccCCCcCeEECCCCCEEEeCC-------CCEEEECC-CCC
Confidence 466665532 468999997764 66521 1111223333 34778888432 45999998 44
Q ss_pred -eEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcc-eEEEeccCC-CCCCCCCceeE
Q 008089 121 -TWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWKRATTSG-NPPSARDSHTC 196 (578)
Q Consensus 121 -~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~-~W~~~~~~g-~~p~~R~~h~~ 196 (578)
.|+.-. +.....+++... ++++++...- ....++.+|++.. .|+.....+ ..+........
T Consensus 67 ~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~~----------~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~ 131 (276)
T 3no2_A 67 ELWNIAA-----PAGCEMQTARILPDGNALVAWCG----------HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQIN 131 (276)
T ss_dssp EEEEEEC-----CTTCEEEEEEECTTSCEEEEEES----------TTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCE
T ss_pred EEEEEcC-----CCCccccccEECCCCCEEEEecC----------CCCEEEEEeCCCCEEEEEeccCCCCcccccccCce
Confidence 365421 111122333333 4566655431 0235777887554 344321111 01111111223
Q ss_pred EEeCCEEEEEecCCCCCcccCceEEEECCCC-ceEEecCCCCCCCCCceeEEEE-eCCEEEEEcCccCCCCccCcEEEEE
Q 008089 197 SSWKNKIIVIGGEDGHDYYLSDVHILDTDTL-TWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDLYMID 274 (578)
Q Consensus 197 ~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~-~W~~v~~~g~~p~~R~~hs~v~-~~~~iyV~GG~~~~~~~~~dv~~yd 274 (578)
...++.+++.... ...+.+||++.+ .|+.-.. + .-+++.. .++.++|.+... ..|+.||
T Consensus 132 ~~~~G~~lv~~~~------~~~v~~~d~~G~~~w~~~~~-~------~~~~~~~~~~g~~~v~~~~~------~~v~~~d 192 (276)
T 3no2_A 132 KNKKGNYLVPLFA------TSEVREIAPNGQLLNSVKLS-G------TPFSSAFLDNGDCLVACGDA------HCFVQLN 192 (276)
T ss_dssp ECTTSCEEEEETT------TTEEEEECTTSCEEEEEECS-S------CCCEEEECTTSCEEEECBTT------SEEEEEC
T ss_pred ECCCCCEEEEecC------CCEEEEECCCCCEEEEEECC-C------CccceeEcCCCCEEEEeCCC------CeEEEEe
Confidence 3345666665432 234889998733 3554321 1 1123333 456777776542 3489999
Q ss_pred CCCCc--EEEEEeCCCCCCCcee-eeEeeeeccCCCEEEEEc
Q 008089 275 VDSGL--WTKVITTGEGPSARFS-VAGDCLDPLKGGVLVFIG 313 (578)
Q Consensus 275 i~t~~--W~~l~~~~~~P~~r~~-~~~~~~~~~~~~~l~v~G 313 (578)
+.+++ |+.-.. ..+..++. ..+..+ ..++.+||..
T Consensus 193 ~~tG~~~w~~~~~--~~~~~~l~~~~~~~~--~~~G~i~v~~ 230 (276)
T 3no2_A 193 LESNRIVRRVNAN--DIEGVQLFFVAQLFP--LQNGGLYICN 230 (276)
T ss_dssp TTTCCEEEEEEGG--GSBSCCCSEEEEEEE--CTTSCEEEEE
T ss_pred CcCCcEEEEecCC--CCCCccccccccceE--cCCCCEEEEe
Confidence 99664 654321 11222222 222222 4577777765
No 79
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=94.49 E-value=0.72 Score=45.82 Aligned_cols=199 Identities=16% Similarity=0.187 Sum_probs=97.1
Q ss_pred EEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--C--CEEEEEcccCCCCCCCcEEEEECCCC
Q 008089 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--G--ENLYVFGGTDGMNPLRDLHILDTSSH 120 (578)
Q Consensus 45 ~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~--~kIYv~GG~~~~~~~~~v~~yD~~t~ 120 (578)
.+++.|+.+ ..+.+||..+..|..+...... ...-.++.+ + +.+++.|+.++ .+.+||+.+.
T Consensus 70 ~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~ 135 (379)
T 3jrp_A 70 TILASCSYD------GKVLIWKEENGRWSQIAVHAVH---SASVNSVQWAPHEYGPLLLVASSDG-----KVSVVEFKEN 135 (379)
T ss_dssp SEEEEEETT------SCEEEEEEETTEEEEEEEECCC---SSCEEEEEECCGGGCSEEEEEETTS-----EEEEEECCTT
T ss_pred CEEEEeccC------CEEEEEEcCCCceeEeeeecCC---CcceEEEEeCCCCCCCEEEEecCCC-----cEEEEecCCC
Confidence 355666643 3588999999887765422211 122222222 3 56777776543 5888888765
Q ss_pred eEEe-cccCCCCCCCCcccEEEEE--------------CCEEEEEccCCCCCCCCCceeeceEEEEEcCcc--eEEEecc
Q 008089 121 TWIS-PSVRGEGPEAREGHSAALV--------------GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATT 183 (578)
Q Consensus 121 ~W~~-l~~~g~~P~~R~~hs~~~~--------------~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~--~W~~~~~ 183 (578)
.... ....+ ....-.+++.. ++.+++.|+.. ..+.+||+.+. .|..+..
T Consensus 136 ~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~ 201 (379)
T 3jrp_A 136 GTTSPIIIDA---HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-----------NLVKIWKYNSDAQTYVLEST 201 (379)
T ss_dssp SCCCEEEEEC---CTTCEEEEEECCCC----------CTTCEEEEEETT-----------SCEEEEEEETTTTEEEEEEE
T ss_pred CceeeEEecC---CCCceEEEEEcCccccccccccCCCCCCEEEEEeCC-----------CeEEEEEecCCCcceeeEEE
Confidence 2211 11000 00111122222 35677777731 34667776543 3444321
Q ss_pred CCCCCCCCCceeEEEe-C---CEEEEEecCCCCCcccCceEEEECCCCc--eEEecCCCCCCCCCceeEEEE-eCCEEEE
Q 008089 184 SGNPPSARDSHTCSSW-K---NKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVA-FGKNLFV 256 (578)
Q Consensus 184 ~g~~p~~R~~h~~~~~-~---~~lyV~GG~~~~~~~~~di~~yD~~t~~--W~~v~~~g~~p~~R~~hs~v~-~~~~iyV 256 (578)
.... ...-.+++.. + +.+++.|+.++. +.+||+.+.. +....... ......-.++.. -++++++
T Consensus 202 ~~~h--~~~v~~~~~sp~~~~~~~l~s~~~dg~------i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~ 272 (379)
T 3jrp_A 202 LEGH--SDWVRDVAWSPTVLLRSYLASVSQDRT------CIIWTQDNEQGPWKKTLLKE-EKFPDVLWRASWSLSGNVLA 272 (379)
T ss_dssp ECCC--SSCEEEEEECCCCSSSEEEEEEETTSC------EEEEEESSTTSCCEEEESSS-SCCSSCEEEEEECSSSCCEE
T ss_pred Eecc--cCcEeEEEECCCCCCCCeEEEEeCCCE------EEEEeCCCCCccceeeeecc-ccCCCcEEEEEEcCCCCEEE
Confidence 1010 1111122222 4 688888876543 7778876642 22221100 111112222222 2456667
Q ss_pred EcCccCCCCccCcEEEEECC-CCcEEEEEeC
Q 008089 257 FGGFTDSQNLYDDLYMIDVD-SGLWTKVITT 286 (578)
Q Consensus 257 ~GG~~~~~~~~~dv~~ydi~-t~~W~~l~~~ 286 (578)
.|+.+ ..+.+||+. ...|..+...
T Consensus 273 ~~~~d------g~i~iw~~~~~~~~~~~~~~ 297 (379)
T 3jrp_A 273 LSGGD------NKVTLWKENLEGKWEPAGEV 297 (379)
T ss_dssp EEESS------SSEEEEEEEETTEEEEEEEE
T ss_pred EecCC------CcEEEEeCCCCCccccccce
Confidence 77653 238888887 5678887653
No 80
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=94.41 E-value=2.1 Score=42.78 Aligned_cols=195 Identities=9% Similarity=0.069 Sum_probs=92.7
Q ss_pred EEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEE
Q 008089 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHIL 115 (578)
Q Consensus 38 v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~y 115 (578)
+++..++.+++.||.+ ..+.++|..+..|......... . ...-.++.. +++.++.|+.++ .+.++
T Consensus 22 l~~sp~g~~las~~~D------~~i~iw~~~~~~~~~~~~~~~~-h-~~~v~~~~~sp~g~~l~s~s~D~-----~v~iw 88 (345)
T 3fm0_A 22 LAWNPAGTLLASCGGD------RRIRIWGTEGDSWICKSVLSEG-H-QRTVRKVAWSPCGNYLASASFDA-----TTCIW 88 (345)
T ss_dssp EEECTTSSCEEEEETT------SCEEEEEEETTEEEEEEEECSS-C-SSCEEEEEECTTSSEEEEEETTS-----CEEEE
T ss_pred EEECCCCCEEEEEcCC------CeEEEEEcCCCcceeeeeeccc-c-CCcEEEEEECCCCCEEEEEECCC-----cEEEE
Confidence 3444344466777754 3478888888877643211110 0 111122222 566777787654 36677
Q ss_pred ECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcc-eEEEeccCCCCCCCCCc
Q 008089 116 DTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWKRATTSGNPPSARDS 193 (578)
Q Consensus 116 D~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~-~W~~~~~~g~~p~~R~~ 193 (578)
|..+..+..+..... ....-.+++.. ++++++.|+.+ ..+.++|+.+. .+..+..... ....
T Consensus 89 ~~~~~~~~~~~~~~~--h~~~v~~v~~sp~~~~l~s~s~D-----------~~v~iwd~~~~~~~~~~~~~~~---h~~~ 152 (345)
T 3fm0_A 89 KKNQDDFECVTTLEG--HENEVKSVAWAPSGNLLATCSRD-----------KSVWVWEVDEEDEYECVSVLNS---HTQD 152 (345)
T ss_dssp EECCC-EEEEEEECC--CSSCEEEEEECTTSSEEEEEETT-----------SCEEEEEECTTSCEEEEEEECC---CCSC
T ss_pred EccCCCeEEEEEccC--CCCCceEEEEeCCCCEEEEEECC-----------CeEEEEECCCCCCeEEEEEecC---cCCC
Confidence 777766543321100 00111122222 45677777732 34667777653 2332221100 0111
Q ss_pred eeEEEe--CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcE
Q 008089 194 HTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDL 270 (578)
Q Consensus 194 h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv 270 (578)
..++.+ ++.+++.|+.++ .+.+||..+..|..+.... .....-.++... ++++++.|+.+. .|
T Consensus 153 v~~~~~~p~~~~l~s~s~d~------~i~~w~~~~~~~~~~~~~~--~h~~~v~~l~~sp~g~~l~s~s~D~------~v 218 (345)
T 3fm0_A 153 VKHVVWHPSQELLASASYDD------TVKLYREEEDDWVCCATLE--GHESTVWSLAFDPSGQRLASCSDDR------TV 218 (345)
T ss_dssp EEEEEECSSSSCEEEEETTS------CEEEEEEETTEEEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTS------CE
T ss_pred eEEEEECCCCCEEEEEeCCC------cEEEEEecCCCEEEEEEec--CCCCceEEEEECCCCCEEEEEeCCC------eE
Confidence 122222 566777777553 3778888888776543310 011111222222 456677776543 25
Q ss_pred EEEEC
Q 008089 271 YMIDV 275 (578)
Q Consensus 271 ~~ydi 275 (578)
.+||.
T Consensus 219 ~iW~~ 223 (345)
T 3fm0_A 219 RIWRQ 223 (345)
T ss_dssp EEEEE
T ss_pred EEecc
Confidence 66654
No 81
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=94.37 E-value=1.3 Score=43.61 Aligned_cols=236 Identities=10% Similarity=0.039 Sum_probs=104.2
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEE-ECCEEEEEcccCCCCCCCcEEEE
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRDLHIL 115 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~kIYv~GG~~~~~~~~~v~~y 115 (578)
++.+..++..++.|+.+ ..+.+||+.+.+....-. .+ ..-.++.. -+++.++.++.+.......+.+|
T Consensus 79 ~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~---~~--~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~ 147 (369)
T 3zwl_B 79 SIDVDCFTKYCVTGSAD------YSIKLWDVSNGQCVATWK---SP--VPVKRVEFSPCGNYFLAILDNVMKNPGSINIY 147 (369)
T ss_dssp EEEECTTSSEEEEEETT------TEEEEEETTTCCEEEEEE---CS--SCEEEEEECTTSSEEEEEECCBTTBCCEEEEE
T ss_pred EEEEcCCCCEEEEEeCC------CeEEEEECCCCcEEEEee---cC--CCeEEEEEccCCCEEEEecCCccCCCCEEEEE
Confidence 34443333355556542 358899998776544221 11 11112222 24555556554322222457777
Q ss_pred ECCCCe----EEecccCC--C--CCCCCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCc-ceEE-Eecc
Q 008089 116 DTSSHT----WISPSVRG--E--GPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTET-FVWK-RATT 183 (578)
Q Consensus 116 D~~t~~----W~~l~~~g--~--~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t-~~W~-~~~~ 183 (578)
|+.+.. +....... . ..........+.. ++++++.|+. ...+.+||+.+ ..-. .+..
T Consensus 148 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~ 216 (369)
T 3zwl_B 148 EIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK-----------DGKISKYDVSNNYEYVDSIDL 216 (369)
T ss_dssp EEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET-----------TSEEEEEETTTTTEEEEEEEC
T ss_pred EecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC-----------CCEEEEEECCCCcEeEEEEec
Confidence 764331 21111000 0 0000001222222 3456666662 24588899887 3322 2221
Q ss_pred CCCCCCCCCceeEEE-eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEE-EeCCEEEEEcCcc
Q 008089 184 SGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV-AFGKNLFVFGGFT 261 (578)
Q Consensus 184 ~g~~p~~R~~h~~~~-~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v-~~~~~iyV~GG~~ 261 (578)
. ...-.+++. .++.+++.|+.+ ..+.+||+.+......-. .......++ .-++..+++|+..
T Consensus 217 ----~-~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~ 280 (369)
T 3zwl_B 217 ----H-EKSISDMQFSPDLTYFITSSRD------TNSFLVDVSTLQVLKKYE-----TDCPLNTAVITPLKEFIILGGGQ 280 (369)
T ss_dssp ----C-SSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEEEEEE-----CSSCEEEEEECSSSSEEEEEECC
T ss_pred ----C-CCceeEEEECCCCCEEEEecCC------ceEEEEECCCCceeeeec-----CCCCceeEEecCCCceEEEeecC
Confidence 1 111122222 256667777644 348899988765444322 111112222 2244555666543
Q ss_pred CCCCc--------cCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccC
Q 008089 262 DSQNL--------YDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (578)
Q Consensus 262 ~~~~~--------~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (578)
+.... ...+.+||..+..=...... .........+ ..++.+++.||.+.
T Consensus 281 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~v~~~~~--s~~~~~l~s~~~dg 337 (369)
T 3zwl_B 281 EAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG-----HFGPLNTVAI--SPQGTSYASGGEDG 337 (369)
T ss_dssp C-------------CEEEEEETTTCCEEEEEEC-----CSSCEEEEEE--CTTSSEEEEEETTS
T ss_pred CCceEEEEecCCCcceeEEEecCCCcchhheec-----ccCcEEEEEE--CCCCCEEEEEcCCC
Confidence 32111 12588889887753332221 1111222223 34566777776654
No 82
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=94.37 E-value=4.5 Score=40.14 Aligned_cols=225 Identities=13% Similarity=0.090 Sum_probs=105.8
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEE
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHI 114 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~ 114 (578)
++.+..++.+++.||.+ ..+.++|..+..-...- +.....-.++.+ ++++++.||.+ ..+.+
T Consensus 60 ~~~~s~d~~~l~s~s~D------g~v~iWd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~~d-----~~v~i 123 (340)
T 1got_B 60 AMHWGTDSRLLLSASQD------GKLIIWDSYTTNKVHAI-----PLRSSWVMTCAYAPSGNYVACGGLD-----NICSI 123 (340)
T ss_dssp EEEECTTSSEEEEEETT------TEEEEEETTTCCEEEEE-----ECSSSCEEEEEECTTSSEEEEEETT-----CEEEE
T ss_pred EEEECCCCCEEEEEeCC------CcEEEEECCCCCcceEe-----ecCCccEEEEEECCCCCEEEEEeCC-----CeEEE
Confidence 33443333456666643 35888998776543211 111111122222 56677777765 35788
Q ss_pred EECCCCe--EEec-ccCCCCCCCCcccEEEE-ECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCC
Q 008089 115 LDTSSHT--WISP-SVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSA 190 (578)
Q Consensus 115 yD~~t~~--W~~l-~~~g~~P~~R~~hs~~~-~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~ 190 (578)
||+.+.. .... ...+. ...-..+.. .++. ++.|+. ...+.++|+.+......-. + ..
T Consensus 124 w~~~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~-l~s~s~-----------d~~i~~wd~~~~~~~~~~~-~--h~- 184 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGH---TGYLSCCRFLDDNQ-IVTSSG-----------DTTCALWDIETGQQTTTFT-G--HT- 184 (340)
T ss_dssp EETTTCSBSCEEEEEEECC---SSCEEEEEEEETTE-EEEEET-----------TSCEEEEETTTTEEEEEEC-C--CS-
T ss_pred EECccCCCcceeEEEecCC---CccEEEEEECCCCc-EEEEEC-----------CCcEEEEECCCCcEEEEEc-C--CC-
Confidence 8876542 1110 00010 001112222 2455 444542 2457788888765433211 0 00
Q ss_pred CCceeEEE-eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccC
Q 008089 191 RDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYD 268 (578)
Q Consensus 191 R~~h~~~~-~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~ 268 (578)
..-.+++. .++.+++.|+.++ .+.+||+.+..-...-. .....-.+++.. ++.+++.|+.+.
T Consensus 185 ~~v~~~~~~~~~~~l~sg~~d~------~v~~wd~~~~~~~~~~~----~h~~~v~~v~~~p~~~~l~s~s~d~------ 248 (340)
T 1got_B 185 GDVMSLSLAPDTRLFVSGACDA------SAKLWDVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDA------ 248 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTS------CEEEEETTTCSEEEEEC----CCSSCEEEEEECTTSSEEEEEETTS------
T ss_pred CceEEEEECCCCCEEEEEeCCC------cEEEEECCCCeeEEEEc----CCcCCEEEEEEcCCCCEEEEEcCCC------
Confidence 11112222 2567888887654 37889987765332211 011111222222 456777777543
Q ss_pred cEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccC
Q 008089 269 DLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (578)
Q Consensus 269 dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (578)
.+.+||+.+..-...... +..........+ ..++.+++.|+.+.
T Consensus 249 ~v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~--s~~g~~l~~g~~d~ 292 (340)
T 1got_B 249 TCRLFDLRADQELMTYSH---DNIICGITSVSF--SKSGRLLLAGYDDF 292 (340)
T ss_dssp CEEEEETTTTEEEEEECC---TTCCSCEEEEEE--CTTSSEEEEEETTS
T ss_pred cEEEEECCCCcEEEEEcc---CCcccceEEEEE--CCCCCEEEEECCCC
Confidence 488999988753322211 111112233333 34666777776543
No 83
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=94.36 E-value=1.2 Score=48.44 Aligned_cols=252 Identities=15% Similarity=0.113 Sum_probs=119.3
Q ss_pred ceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEc--CCCcEEEeeecCCCCCCCcceeEEEE-----CC-EEEEEcccCC
Q 008089 34 GHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDT--VNQTWSQPVIKGSPPTPRDSHSCTTV-----GE-NLYVFGGTDG 105 (578)
Q Consensus 34 ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~--~t~~W~~l~~~g~~P~~R~~hs~~~~-----~~-kIYv~GG~~~ 105 (578)
-|...+..++++||+.+. + +.+.+||+ .+.+-... ++....-+.++.. ++ .+|+..-.+
T Consensus 181 ~~~v~~spdg~~l~v~~~-d------~~V~v~D~~~~t~~~~~~-----i~~g~~p~~va~sp~~~~dg~~l~v~~~~~- 247 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGR-D------ARIDMIDLWAKEPTKVAE-----IKIGIEARSVESSKFKGYEDRYTIAGAYWP- 247 (543)
T ss_dssp EEEEEECTTSCEEEEEET-T------SEEEEEETTSSSCEEEEE-----EECCSEEEEEEECCSTTCTTTEEEEEEEES-
T ss_pred cceEEECCCCCEEEEECC-C------CeEEEEECcCCCCcEEEE-----EecCCCcceEEeCCCcCCCCCEEEEEEccC-
Confidence 355555566777777653 1 56899999 66543321 1111222233332 44 455543221
Q ss_pred CCCCCcEEEEECCCCeEEe-cccCCC-------CCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcc
Q 008089 106 MNPLRDLHILDTSSHTWIS-PSVRGE-------GPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF 176 (578)
Q Consensus 106 ~~~~~~v~~yD~~t~~W~~-l~~~g~-------~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~ 176 (578)
+.+.++|..+.+-.+ ++..+. .|.+|....+... +..+|+-... .+.++++|..+.
T Consensus 248 ----~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~-----------~g~i~vvd~~~~ 312 (543)
T 1nir_A 248 ----PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-----------TGKVLLVNYKDI 312 (543)
T ss_dssp ----SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT-----------TTEEEEEECTTS
T ss_pred ----CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC-----------CCeEEEEEecCC
Confidence 458888988776432 222110 0222222222222 3455554331 356788887653
Q ss_pred eE---EEeccCCCCCCCCCceeEEEe-CCE-EEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-
Q 008089 177 VW---KRATTSGNPPSARDSHTCSSW-KNK-IIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF- 250 (578)
Q Consensus 177 ~W---~~~~~~g~~p~~R~~h~~~~~-~~~-lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~- 250 (578)
.- ..+. ..+.-+..+.. +++ +|+.+. ..+.+.++|+++++-...-..+..|.+-.+...+.-
T Consensus 313 ~~l~~~~i~------~~~~~~~~~~spdg~~l~va~~------~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~ 380 (543)
T 1nir_A 313 DNLTVTSIG------AAPFLHDGGWDSSHRYFMTAAN------NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPK 380 (543)
T ss_dssp SSCEEEEEE------CCSSCCCEEECTTSCEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETT
T ss_pred CcceeEEec------cCcCccCceECCCCCEEEEEec------CCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCC
Confidence 21 1222 12222333332 444 555432 234588899998876554443444554333333222
Q ss_pred CCEEEEEcCccCCCCccCcEEEEECCCC-----cEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCCCCccCcE
Q 008089 251 GKNLFVFGGFTDSQNLYDDLYMIDVDSG-----LWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDM 325 (578)
Q Consensus 251 ~~~iyV~GG~~~~~~~~~dv~~ydi~t~-----~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~ 325 (578)
++.+|+.+...+ +.|.+||..+. .|+.+.............. ....+..||+-.-.+......+.+
T Consensus 381 ~g~~~~s~~~~d-----~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~----~~pdg~~l~v~~~~~~~~~~~~~v 451 (543)
T 1nir_A 381 YGPVWSTSHLGD-----GSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIK----THPKSSHLYVDTTFNPDARISQSV 451 (543)
T ss_dssp TEEEEEEEBSSS-----SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE----CCTTCCEEEECCTTCSSHHHHTCE
T ss_pred CccEEEeccCCC-----ceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEE----cCCCCCcEEEecCCCCCcccCceE
Confidence 356777765322 34888998772 2776655321111111111 224566777632112111123467
Q ss_pred EEEeccccc
Q 008089 326 YYLYTGLVN 334 (578)
Q Consensus 326 ~~l~~~~~~ 334 (578)
..+++...+
T Consensus 452 ~v~d~~~~~ 460 (543)
T 1nir_A 452 AVFDLKNLD 460 (543)
T ss_dssp EEEETTCTT
T ss_pred EEEECCCCC
Confidence 777766444
No 84
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=94.34 E-value=5.4 Score=43.89 Aligned_cols=121 Identities=9% Similarity=0.094 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEc-CCC--cEEEeeecCC--CCCC---CcceeEEE--ECCE----EEEEcccCCCCC
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDT-VNQ--TWSQPVIKGS--PPTP---RDSHSCTT--VGEN----LYVFGGTDGMNP 108 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~-~t~--~W~~l~~~g~--~P~~---R~~hs~~~--~~~k----IYv~GG~~~~~~ 108 (578)
++.||+.+.+ .+.++.||. .++ .|+.-..... .+.. ....+.++ .+++ ||+...
T Consensus 62 ~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~------ 129 (599)
T 1w6s_A 62 DGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL------ 129 (599)
T ss_dssp TTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT------
T ss_pred CCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC------
Confidence 5578887653 246999999 765 5886321100 0000 11223444 5666 887642
Q ss_pred CCcEEEEECCCCe--EEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcc--eEEEec
Q 008089 109 LRDLHILDTSSHT--WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRAT 182 (578)
Q Consensus 109 ~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~--~W~~~~ 182 (578)
-..++.+|..+.+ |+.-. ...........+-++.++.+|+-.+.. .......++.||..+. .|+.-.
T Consensus 130 dg~l~AlDa~TG~~~W~~~~-~~~~~~~~~~ssP~v~~g~V~vg~~g~------e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 130 DGNVAALNAETGETVWKVEN-SDIKVGSTLTIAPYVVKDKVIIGSSGA------ELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp TSEEEEEETTTCCEEEEEEC-CCGGGTCBCCSCCEEETTEEEECCBCG------GGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEECCCCCEEEeecC-CCCCccceeecCCEEECCEEEEEeccc------ccCCCCeEEEEECCCCcEEEEEcC
Confidence 1469999988764 87522 110000011223345688877643210 0012357899999875 487553
No 85
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=94.22 E-value=8.7 Score=42.87 Aligned_cols=126 Identities=15% Similarity=0.132 Sum_probs=70.7
Q ss_pred eEEEECCEEEEEcccCCCCCCCcEEEEECCCC--eEEecccCCCC--CC---CCcccEEEEECCEEEEEccCCCCCCCCC
Q 008089 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSH--TWISPSVRGEG--PE---AREGHSAALVGKRLFIFGGCGKSSNTND 161 (578)
Q Consensus 89 s~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~--P~---~R~~hs~~~~~~~lyvfGG~~~~~~~~~ 161 (578)
+-++.+++||+.+.. ..++.+|..+. .|+.-...... +. .....+.++.+++||+-..
T Consensus 65 ~P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~--------- 129 (689)
T 1yiq_A 65 TPIVVDGVMYTTGPF------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL--------- 129 (689)
T ss_dssp CCEEETTEEEEECGG------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---------
T ss_pred cCEEECCEEEEEcCC------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc---------
Confidence 335679999998652 46999998875 48753211000 00 0112234567888888543
Q ss_pred ceeeceEEEEEcCcc--eEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCc--eEEec
Q 008089 162 EVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELN 233 (578)
Q Consensus 162 ~~~~ndv~~yd~~t~--~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~--W~~v~ 233 (578)
...++.+|..+. .|+.-.............+.++.++.+|+-.+... ......++.||.++.+ |+.-.
T Consensus 130 ---dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~~ 201 (689)
T 1yiq_A 130 ---DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAE-FGVRGYVTAYDAETGKEAWRFYT 201 (689)
T ss_dssp ---TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEES
T ss_pred ---CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCc-cCCCCEEEEEECCCCcEEEEecc
Confidence 245889998865 48765420111111122234556888877432211 1134569999998765 88653
No 86
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=94.11 E-value=3.1 Score=42.78 Aligned_cols=152 Identities=14% Similarity=0.124 Sum_probs=75.7
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEE
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHI 114 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~ 114 (578)
++.+..+..+++.|+.+ ..+.++|..+......- .+. ...-.++.+ ++++++.||.++. +.+
T Consensus 113 ~~~~~p~~~~l~s~s~D------g~i~vwd~~~~~~~~~l-~~h----~~~V~~v~~~~~~~~l~sgs~D~~-----i~i 176 (410)
T 1vyh_C 113 RVIFHPVFSVMVSASED------ATIKVWDYETGDFERTL-KGH----TDSVQDISFDHSGKLLASCSADMT-----IKL 176 (410)
T ss_dssp EEEECSSSSEEEEEESS------SCEEEEETTTCCCCEEE-CCC----SSCEEEEEECTTSSEEEEEETTSC-----CCE
T ss_pred EEEEcCCCCEEEEEeCC------CeEEEEECCCCcEEEEE-ecc----CCcEEEEEEcCCCCEEEEEeCCCe-----EEE
Confidence 44454444466777743 35889998876543311 111 111122222 5677788876643 667
Q ss_pred EECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCc
Q 008089 115 LDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (578)
Q Consensus 115 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~ 193 (578)
||+.+.+-...- .+ ....-.+++.. ++..++.|+. ...+.++|+.+......-. + ....
T Consensus 177 wd~~~~~~~~~~-~~---h~~~V~~v~~~p~~~~l~s~s~-----------D~~i~~wd~~~~~~~~~~~-~----h~~~ 236 (410)
T 1vyh_C 177 WDFQGFECIRTM-HG---HDHNVSSVSIMPNGDHIVSASR-----------DKTIKMWEVQTGYCVKTFT-G----HREW 236 (410)
T ss_dssp EETTSSCEEECC-CC---CSSCEEEEEECSSSSEEEEEET-----------TSEEEEEETTTCCEEEEEE-C----CSSC
T ss_pred EeCCCCceeEEE-cC---CCCCEEEEEEeCCCCEEEEEeC-----------CCeEEEEECCCCcEEEEEe-C----CCcc
Confidence 787765442211 01 01111122222 3556666763 2457788887765432211 0 0111
Q ss_pred eeEEE--eCCEEEEEecCCCCCcccCceEEEECCCCceE
Q 008089 194 HTCSS--WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWK 230 (578)
Q Consensus 194 h~~~~--~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~ 230 (578)
..++. .++.+++.|+.++ .+.+||+.+....
T Consensus 237 v~~~~~~~~g~~l~s~s~D~------~v~vwd~~~~~~~ 269 (410)
T 1vyh_C 237 VRMVRPNQDGTLIASCSNDQ------TVRVWVVATKECK 269 (410)
T ss_dssp EEEEEECTTSSEEEEEETTS------CEEEEETTTCCEE
T ss_pred EEEEEECCCCCEEEEEcCCC------eEEEEECCCCcee
Confidence 12222 2567777777653 3778888766543
No 87
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=94.08 E-value=4.5 Score=39.05 Aligned_cols=247 Identities=12% Similarity=0.054 Sum_probs=120.9
Q ss_pred CcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCC
Q 008089 32 RWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLR 110 (578)
Q Consensus 32 R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~ 110 (578)
....+.+...+++.||+.+.. ...+++||+.+. ...+.. +. ..-++++.. ++++|+.... ..
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~------~~~i~~~~~~~~-~~~~~~----~~-~~~~~l~~~~dg~l~v~~~~-----~~ 90 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVR------QNRTWAWSDDGQ-LSPEMH----PS-HHQNGHCLNKQGHLIACSHG-----LR 90 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGG------GTEEEEEETTSC-EEEEES----SC-SSEEEEEECTTCCEEEEETT-----TT
T ss_pred ccccCCeEeCCCCEEEEEeCC------CCEEEEEECCCC-eEEEEC----CC-CCcceeeECCCCcEEEEecC-----CC
Confidence 344555566666668887753 246899999987 655431 11 112233332 5678776532 24
Q ss_pred cEEEEECCCCeEEecccC-CCCCCCCcccEEEEECCEEEEE----ccCCCC--CCCCCceeeceEEEEEcCcceEEEecc
Q 008089 111 DLHILDTSSHTWISPSVR-GEGPEAREGHSAALVGKRLFIF----GGCGKS--SNTNDEVYYNDLYILNTETFVWKRATT 183 (578)
Q Consensus 111 ~v~~yD~~t~~W~~l~~~-g~~P~~R~~hs~~~~~~~lyvf----GG~~~~--~~~~~~~~~ndv~~yd~~t~~W~~~~~ 183 (578)
.+++||+.+.+...+... ...+..+....++.-++++|+. |..... ...........++++++. .+...+..
T Consensus 91 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~ 169 (296)
T 3e5z_A 91 RLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR 169 (296)
T ss_dssp EEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC
T ss_pred eEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec
Confidence 699999988877654311 0111111122222235678886 431000 000001112478999987 55554432
Q ss_pred CCCCCCCCCceeEEE-eCCEEEEEecCCCCCcccCceEEEECC-CCce---EEecCCCCCCCCCceeEEEEeCCEEEEEc
Q 008089 184 SGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTD-TLTW---KELNTSGMVLSPRAGHSTVAFGKNLFVFG 258 (578)
Q Consensus 184 ~g~~p~~R~~h~~~~-~~~~lyV~GG~~~~~~~~~di~~yD~~-t~~W---~~v~~~g~~p~~R~~hs~v~~~~~iyV~G 258 (578)
. . .....++. .++++++.... .+.+++||+. +... ..+-. .....++ ..++.-+++|||..
T Consensus 170 ~--~---~~~~gi~~s~dg~~lv~~~~------~~~i~~~~~~~~g~~~~~~~~~~-~~~~~p~--~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 170 D--R---VKPNGLAFLPSGNLLVSDTG------DNATHRYCLNARGETEYQGVHFT-VEPGKTD--GLRVDAGGLIWASA 235 (296)
T ss_dssp C--C---SSEEEEEECTTSCEEEEETT------TTEEEEEEECSSSCEEEEEEEEC-CSSSCCC--SEEEBTTSCEEEEE
T ss_pred C--C---CCCccEEECCCCCEEEEeCC------CCeEEEEEECCCCcCcCCCeEee-CCCCCCC--eEEECCCCCEEEEc
Confidence 1 1 11122332 25665544332 2458889876 4554 12211 1111111 12223356788766
Q ss_pred CccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEecccc
Q 008089 259 GFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLV 333 (578)
Q Consensus 259 G~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~~~~~ 333 (578)
+ +.|++||+.......+... .. ....++....++.||+... +.+|.++....
T Consensus 236 ~--------~~v~~~~~~g~~~~~~~~~-~~------~~~~~f~~~d~~~L~v~t~--------~~l~~~~~~~~ 287 (296)
T 3e5z_A 236 G--------DGVHVLTPDGDELGRVLTP-QT------TSNLCFGGPEGRTLYMTVS--------TEFWSIETNVR 287 (296)
T ss_dssp T--------TEEEEECTTSCEEEEEECS-SC------CCEEEEESTTSCEEEEEET--------TEEEEEECSCC
T ss_pred C--------CeEEEECCCCCEEEEEECC-CC------ceeEEEECCCCCEEEEEcC--------CeEEEEEcccc
Confidence 1 3489999986655555432 11 1222232234556777431 24777766543
No 88
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=94.05 E-value=2.2 Score=43.91 Aligned_cols=84 Identities=14% Similarity=0.065 Sum_probs=42.3
Q ss_pred ceEEEECCCCceEEecCCCCCCCCCceeEEEE--eCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCcee
Q 008089 218 DVHILDTDTLTWKELNTSGMVLSPRAGHSTVA--FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFS 295 (578)
Q Consensus 218 di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~--~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~ 295 (578)
.|.+||+.+..-...... .....+++. .++.+++.+|..+ +.|.+||..+..- +.... + ....
T Consensus 302 ~I~iwd~~t~~~~~~~~~-----~~~v~~~~~~~~~~~lv~~sg~~d-----~~I~iwd~~~~~~--v~~l~-g--H~~~ 366 (420)
T 4gga_A 302 HIRIWNVCSGACLSAVDA-----HSQVCSILWSPHYKELISGHGFAQ-----NQLVIWKYPTMAK--VAELK-G--HTSR 366 (420)
T ss_dssp EEEEEETTTTEEEEEEEC-----SSCEEEEEEETTTTEEEEEECTTT-----CCEEEEETTTCCE--EEEEC-C--CSSC
T ss_pred EEEEEeCCccccceeecc-----ccceeeeeecCCCCeEEEEEecCC-----CEEEEEECCCCcE--EEEEc-C--CCCC
Confidence 488899988764443321 111122222 2455666656543 3489999987653 32211 1 1112
Q ss_pred eeEeeeeccCCCEEEEEccccCC
Q 008089 296 VAGDCLDPLKGGVLVFIGGCNKS 318 (578)
Q Consensus 296 ~~~~~~~~~~~~~l~v~GG~~~~ 318 (578)
....++ ..++.+++.||.+..
T Consensus 367 V~~l~~--spdg~~l~S~s~D~t 387 (420)
T 4gga_A 367 VLSLTM--SPDGATVASAAADET 387 (420)
T ss_dssp EEEEEE--CTTSSCEEEEETTTE
T ss_pred EEEEEE--cCCCCEEEEEecCCe
Confidence 222233 346667777776543
No 89
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=93.86 E-value=7.9 Score=42.52 Aligned_cols=193 Identities=10% Similarity=0.056 Sum_probs=97.2
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEEECCCC-eEEecccCCCCC-CCC
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSH-TWISPSVRGEGP-EAR 135 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~yD~~t~-~W~~l~~~g~~P-~~R 135 (578)
..++++|+.+.+...+.. + .........+.. +++.++++..+.......++.+|+.+. .+..+....... ...
T Consensus 235 ~~l~~~d~~~~~~~~~~~-~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQT-G--EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp EEEEEEETTTTEEEECCC-C--SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred eEEEEEECCCCceEeecc-C--CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 569999999887665431 1 111112122222 555444444443334458999999988 665543211100 000
Q ss_pred cccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEe--CC-EEEEEecCC
Q 008089 136 EGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KN-KIIVIGGED 210 (578)
Q Consensus 136 ~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~--~~-~lyV~GG~~ 210 (578)
........ ++++++.+... . ...+|.+|........+... . .....+..+ ++ .||+.+..+
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~------g---~~~l~~~~~~~~~~~~l~~~---~--~~v~~~~~~spdg~~l~~~~~~~ 377 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRD------G---WNHLYLYDTTGRLIRQVTKG---E--WEVTNFAGFDPKGTRLYFESTEA 377 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTT------S---SCEEEEEETTSCEEEECCCS---S--SCEEEEEEECTTSSEEEEEESSS
T ss_pred cCCceeecCCCCEEEEEEccC------C---ccEEEEEECCCCEEEecCCC---C--eEEEeeeEEcCCCCEEEEEecCC
Confidence 01112222 56655555421 1 35688888777777766421 1 111121222 34 555555432
Q ss_pred CCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 211 GHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 211 ~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
+. ....++.+|..+.....+.. ....+++... +++.+++..... .....++++|+.++.
T Consensus 378 ~~--~~~~l~~~d~~~~~~~~l~~------~~~~~~~~~spdg~~l~~~~~~~--~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 378 SP--LERHFYCIDIKGGKTKDLTP------ESGMHRTQLSPDGSAIIDIFQSP--TVPRKVTVTNIGKGS 437 (706)
T ss_dssp CT--TCBEEEEEETTCCCCEESCC------SSSEEEEEECTTSSEEEEEEECS--SCSCEEEEEESSSCE
T ss_pred CC--ceEEEEEEEcCCCCceeccC------CCceEEEEECCCCCEEEEEecCC--CCCcEEEEEECCCCe
Confidence 21 23468999998877665542 1112333332 455555554322 223569999998887
No 90
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=93.84 E-value=10 Score=42.30 Aligned_cols=117 Identities=14% Similarity=0.128 Sum_probs=65.8
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCC--cEEEeeecCCCCC--------CCcceeEEEECCEEEEEcccCCCCCCCcE
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPT--------PRDSHSCTTVGENLYVFGGTDGMNPLRDL 112 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~P~--------~R~~hs~~~~~~kIYv~GG~~~~~~~~~v 112 (578)
++.||+.+. .+.++.+|..++ .|+.-. ..+. .....+.++.+++||+... -..+
T Consensus 70 ~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~------dg~l 133 (689)
T 1yiq_A 70 DGVMYTTGP-------FSVVYALDARDGRLIWKYDP---QSDRHRAGEACCDAVNRGVAVWKGKVYVGVL------DGRL 133 (689)
T ss_dssp TTEEEEECG-------GGCEEEEETTTCCEEEEECC---CCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSEE
T ss_pred CCEEEEEcC-------CCeEEEEECCCCceeEEEcC---CCCccccccccccCCCCccEEECCEEEEEcc------CCEE
Confidence 557888654 245999999876 587621 1110 0112234567888888652 2469
Q ss_pred EEEECCCCe--EEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcce--EEEe
Q 008089 113 HILDTSSHT--WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--WKRA 181 (578)
Q Consensus 113 ~~yD~~t~~--W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~--W~~~ 181 (578)
+.+|..|.+ |+...............+-++.++.+|+-.+... ......++.||..+.+ |+.-
T Consensus 134 ~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~------~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 134 EAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAE------FGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTT------TCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCc------cCCCCEEEEEECCCCcEEEEec
Confidence 999998764 8753210110111112234556888877432110 1124578999998765 8764
No 91
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=93.79 E-value=5.3 Score=38.88 Aligned_cols=239 Identities=11% Similarity=-0.007 Sum_probs=111.8
Q ss_pred CcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEE-ECCEEEEEcccCCCCCCC
Q 008089 32 RWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLR 110 (578)
Q Consensus 32 R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~kIYv~GG~~~~~~~~ 110 (578)
+++-..+...+++.||+..-. ...+++||+.+........ + .+.. +++. -++++|+.. .+
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~------~~~i~~~d~~~~~~~~~~~----~-~~~~-~i~~~~dG~l~v~~-------~~ 73 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIP------AKKVCRWDSFTKQVQRVTM----D-APVS-SVALRQSGGYVATI-------GT 73 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETT------TTEEEEEETTTCCEEEEEC----S-SCEE-EEEEBTTSSEEEEE-------TT
T ss_pred ccccCCeEECCCCEEEEEECC------CCEEEEEECCCCcEEEEeC----C-CceE-EEEECCCCCEEEEE-------CC
Confidence 345555555556678887653 2468999999876654331 1 1111 2222 256666653 14
Q ss_pred cEEEEECCCCeEEecccCC-CCCCCCcccEEEEECCEEEEEccCCCCCC-CCCceeeceEEEEEcCcceEEEeccCCCCC
Q 008089 111 DLHILDTSSHTWISPSVRG-EGPEAREGHSAALVGKRLFIFGGCGKSSN-TNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (578)
Q Consensus 111 ~v~~yD~~t~~W~~l~~~g-~~P~~R~~hs~~~~~~~lyvfGG~~~~~~-~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p 188 (578)
.+++||+.+.+++.+.... ..+..+....++.-++++|+-. ...... .........+|++++.. ....+.....
T Consensus 74 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~-~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~-- 149 (297)
T 3g4e_A 74 KFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGT-MAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVD-- 149 (297)
T ss_dssp EEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEE-EECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEES--
T ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEec-CCcccccccccCCCcEEEEEECCC-CEEEEeeccc--
Confidence 6999999999887654221 1122222222222246777632 110000 00001235688888763 3333221101
Q ss_pred CCCCceeEEEe--CCEEEEEecCCCCCcccCceEEEEC--CCCceEEecCCCCCCC-CCceeEEEE-eCCEEEEEcCccC
Q 008089 189 SARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDT--DTLTWKELNTSGMVLS-PRAGHSTVA-FGKNLFVFGGFTD 262 (578)
Q Consensus 189 ~~R~~h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~--~t~~W~~v~~~g~~p~-~R~~hs~v~-~~~~iyV~GG~~~ 262 (578)
....++.. ++.||+.... .+.|++||. ++............+. ...-..++. -+++|||....
T Consensus 150 ---~pngi~~spdg~~lyv~~~~------~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~-- 218 (297)
T 3g4e_A 150 ---ISNGLDWSLDHKIFYYIDSL------SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN-- 218 (297)
T ss_dssp ---BEEEEEECTTSCEEEEEEGG------GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET--
T ss_pred ---cccceEEcCCCCEEEEecCC------CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC--
Confidence 11223332 3467777532 345888875 4544321110000111 011112332 34677776421
Q ss_pred CCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEc
Q 008089 263 SQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIG 313 (578)
Q Consensus 263 ~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~G 313 (578)
-..|++||+++++....-.. |.. ...++++.....+.|||.-
T Consensus 219 ----~~~v~~~d~~tG~~~~~i~~---p~~--~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 219 ----GGRVIRLDPVTGKRLQTVKL---PVD--KTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp ----TTEEEEECTTTCCEEEEEEC---SSS--BEEEEEEESGGGCEEEEEE
T ss_pred ----CCEEEEEcCCCceEEEEEEC---CCC--CceEEEEeCCCCCEEEEEc
Confidence 12499999997765443332 211 2233333323445677654
No 92
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=93.78 E-value=6.4 Score=39.72 Aligned_cols=189 Identities=10% Similarity=0.016 Sum_probs=91.5
Q ss_pred CEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCCcEEEEECCCCeE
Q 008089 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (578)
Q Consensus 44 ~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~yD~~t~~W 122 (578)
..+++.|+.+ ..+.+||..+..-...- .+ ....-.+++.. ++++++.|+.++ .+.+||+.+.+-
T Consensus 109 ~~~l~~~~~d------g~i~iwd~~~~~~~~~~-~~---h~~~v~~~~~~~~~~~l~s~s~d~-----~i~iwd~~~~~~ 173 (420)
T 3vl1_A 109 MRRFILGTTE------GDIKVLDSNFNLQREID-QA---HVSEITKLKFFPSGEALISSSQDM-----QLKIWSVKDGSN 173 (420)
T ss_dssp SCEEEEEETT------SCEEEECTTSCEEEEET-TS---SSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTCCC
T ss_pred CCEEEEEECC------CCEEEEeCCCcceeeec-cc---ccCccEEEEECCCCCEEEEEeCCC-----eEEEEeCCCCcC
Confidence 3466667643 35888998876544321 11 11111222222 556777777543 588899876542
Q ss_pred Ee-cccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEE---
Q 008089 123 IS-PSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCS--- 197 (578)
Q Consensus 123 ~~-l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~--- 197 (578)
.. +. + ....-.+++.. ++.+++.|+.. ..+.+||+.+.+-...-.....+.. .-.+++
T Consensus 174 ~~~~~--~---h~~~v~~~~~~~~~~~l~s~~~d-----------~~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~ 236 (420)
T 3vl1_A 174 PRTLI--G---HRATVTDIAIIDRGRNVLSASLD-----------GTIRLWECGTGTTIHTFNRKENPHD-GVNSIALFV 236 (420)
T ss_dssp CEEEE--C---CSSCEEEEEEETTTTEEEEEETT-----------SCEEEEETTTTEEEEEECBTTBTTC-CEEEEEEEE
T ss_pred ceEEc--C---CCCcEEEEEEcCCCCEEEEEcCC-----------CcEEEeECCCCceeEEeecCCCCCC-CccEEEEec
Confidence 11 11 0 11111233333 45566666631 3477888876543322110000000 001111
Q ss_pred -------------------EeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCE-EEE
Q 008089 198 -------------------SWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKN-LFV 256 (578)
Q Consensus 198 -------------------~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~-iyV 256 (578)
..++.+++.|+.++ .+.+||+.+..-..... ......-.+++.. ++. +++
T Consensus 237 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~ 307 (420)
T 3vl1_A 237 GTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG------VITVHNVFSKEQTIQLP---SKFTCSCNSLTVDGNNANYIY 307 (420)
T ss_dssp CCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS------CEEEEETTTCCEEEEEC---CTTSSCEEEEEECSSCTTEEE
T ss_pred CCcceeeecccCcccceEEcCCCCEEEEEcCCC------eEEEEECCCCceeEEcc---cccCCCceeEEEeCCCCCEEE
Confidence 12567777777543 38899987765333221 1111122223333 333 777
Q ss_pred EcCccCCCCccCcEEEEECCCCc
Q 008089 257 FGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 257 ~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
.|+.+ ..|.+||+.+..
T Consensus 308 ~g~~d------g~i~vwd~~~~~ 324 (420)
T 3vl1_A 308 AGYEN------GMLAQWDLRSPE 324 (420)
T ss_dssp EEETT------SEEEEEETTCTT
T ss_pred EEeCC------CeEEEEEcCCCc
Confidence 77653 348999998763
No 93
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=93.76 E-value=4.4 Score=41.97 Aligned_cols=161 Identities=11% Similarity=0.029 Sum_probs=76.7
Q ss_pred EEEEE-cCCCEEEEEcCCCCCCCCcccEEEEEcC--CCcEEEeeecCCCCCCCcceeEEE-ECCEEEEEcccCCCCCCCc
Q 008089 36 TCNAI-KGGRFLYVFGGYGKDNCQTNQVHVFDTV--NQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRD 111 (578)
Q Consensus 36 s~v~v-~~g~~Iyv~GG~~~~~~~~~~v~~yD~~--t~~W~~l~~~g~~P~~R~~hs~~~-~~~kIYv~GG~~~~~~~~~ 111 (578)
.++.+ .+++.|++.|+.+ ..+.+||.. +......-.....+ ..-.+++. -+++.++.|+.+ ..
T Consensus 106 ~~~~~s~d~~~l~~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~~~~-----g~ 172 (450)
T 2vdu_B 106 RNLRLTSDESRLIACADSD------KSLLVFDVDKTSKNVLKLRKRFCFS--KRPNAISIAEDDTTVIIADKF-----GD 172 (450)
T ss_dssp EEEEECTTSSEEEEEEGGG------TEEEEEEECSSSSSCEEEEEEEECS--SCEEEEEECTTSSEEEEEETT-----SE
T ss_pred EEEEEcCCCCEEEEEECCC------CeEEEEECcCCCCceeeeeecccCC--CCceEEEEcCCCCEEEEEeCC-----Cc
Confidence 34444 4566666777743 357888887 54433221000011 11112222 255666666543 35
Q ss_pred EEEEECCCCeEEecccCCCCC-CCCcccEEEE-EC---CEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCC
Q 008089 112 LHILDTSSHTWISPSVRGEGP-EAREGHSAAL-VG---KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 186 (578)
Q Consensus 112 v~~yD~~t~~W~~l~~~g~~P-~~R~~hs~~~-~~---~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~ 186 (578)
++.+++.+....... ...+. ....-.+++. .+ +++++.|+.+ ..+.+||+.+......-..+
T Consensus 173 v~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-----------~~i~vwd~~~~~~~~~~~~~- 239 (450)
T 2vdu_B 173 VYSIDINSIPEEKFT-QEPILGHVSMLTDVHLIKDSDGHQFIITSDRD-----------EHIKISHYPQCFIVDKWLFG- 239 (450)
T ss_dssp EEEEETTSCCCSSCC-CCCSEECSSCEEEEEEEECTTSCEEEEEEETT-----------SCEEEEEESCTTCEEEECCC-
T ss_pred EEEEecCCccccccc-ceeeecccCceEEEEEcCCCCCCcEEEEEcCC-----------CcEEEEECCCCceeeeeecC-
Confidence 888887665432100 00000 0011112222 35 6677777732 45778888765433221101
Q ss_pred CCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceE
Q 008089 187 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWK 230 (578)
Q Consensus 187 ~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~ 230 (578)
......+.+.. ++.+++.|+.+ ..+.+||+.+.+..
T Consensus 240 -h~~~v~~~~~s-d~~~l~s~~~d------~~v~vwd~~~~~~~ 275 (450)
T 2vdu_B 240 -HKHFVSSICCG-KDYLLLSAGGD------DKIFAWDWKTGKNL 275 (450)
T ss_dssp -CSSCEEEEEEC-STTEEEEEESS------SEEEEEETTTCCEE
T ss_pred -CCCceEEEEEC-CCCEEEEEeCC------CeEEEEECCCCcEe
Confidence 11111122222 67777787744 35888998876643
No 94
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=93.72 E-value=1.9 Score=41.91 Aligned_cols=117 Identities=13% Similarity=0.112 Sum_probs=60.0
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEE-eeecCCCCC--CCcceeEEEE-C-CEEEEEcccC---CCC-
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQ-PVIKGSPPT--PRDSHSCTTV-G-ENLYVFGGTD---GMN- 107 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~-l~~~g~~P~--~R~~hs~~~~-~-~kIYv~GG~~---~~~- 107 (578)
.....+++.+|+.+.. ...++++|+.+.+-.. +. .+. +. ...-+.++.. + +.+|+..... ...
T Consensus 39 ~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~~~~~~~-~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 110 (337)
T 1pby_B 39 PMVAPGGRIAYATVNK------SESLVKIDLVTGETLGRID-LST-PEERVKSLFGAALSPDGKTLAIYESPVRLELTHF 110 (337)
T ss_dssp EEECTTSSEEEEEETT------TTEEEEEETTTCCEEEEEE-CCB-TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred eEEcCCCCEEEEEeCC------CCeEEEEECCCCCeEeeEE-cCC-cccccccccceEECCCCCEEEEEecccccccccc
Confidence 3444566678877652 2469999998876543 22 111 00 0011222322 3 4677764210 011
Q ss_pred --CCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE-CC-EEEEEccCCCCCCCCCceeeceEEEEEcCcceEEE
Q 008089 108 --PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR 180 (578)
Q Consensus 108 --~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~-~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~ 180 (578)
.-+.+++||+.+.+....-..+. .-+.++.. ++ .||+.+ ..++++|+.+.+-..
T Consensus 111 ~~~~~~i~v~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~--------------~~i~~~d~~~~~~~~ 168 (337)
T 1pby_B 111 EVQPTRVALYDAETLSRRKAFEAPR-----QITMLAWARDGSKLYGLG--------------RDLHVMDPEAGTLVE 168 (337)
T ss_dssp EECCCEEEEEETTTTEEEEEEECCS-----SCCCEEECTTSSCEEEES--------------SSEEEEETTTTEEEE
T ss_pred cccCceEEEEECCCCcEEEEEeCCC-----CcceeEECCCCCEEEEeC--------------CeEEEEECCCCcEee
Confidence 13679999999877643221111 12233333 33 466652 348899998776543
No 95
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=93.61 E-value=3.5 Score=45.67 Aligned_cols=221 Identities=10% Similarity=-0.018 Sum_probs=106.9
Q ss_pred EEEEEcCCCEEEEEcCC-CCCCCCcccEEEEEcCCCcEEEeeecCCCC---------------CCC------cceeEEEE
Q 008089 36 TCNAIKGGRFLYVFGGY-GKDNCQTNQVHVFDTVNQTWSQPVIKGSPP---------------TPR------DSHSCTTV 93 (578)
Q Consensus 36 s~v~v~~g~~Iyv~GG~-~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P---------------~~R------~~hs~~~~ 93 (578)
......+|+.|+ +++. +... ....++++|+.+++...+....... ..| ....+..-
T Consensus 41 ~~~~SpdG~~la-~~~~~d~~~-~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp 118 (741)
T 2ecf_A 41 KPKVAPDGSRVT-FLRGKDSDR-NQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP 118 (741)
T ss_dssp EEEECTTSSEEE-EEECCSSCT-TEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred CceEecCCCEEE-EEeccCCCC-cccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence 334445666554 4443 3221 2347999999998877654211111 000 11112222
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCC---eEEecccCCCCCCCCcccEEEE-ECCEEEEEccCCCCCCCCCceeeceEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSH---TWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLY 169 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~---~W~~l~~~g~~P~~R~~hs~~~-~~~~lyvfGG~~~~~~~~~~~~~ndv~ 169 (578)
+++.++++.. ..++++|+.+. ....+.. ....-...+. -+++.++++. .+.++
T Consensus 119 Dg~~l~~~~~------~~i~~~d~~~~~~~~~~~l~~-----~~~~~~~~~~SPDG~~la~~~------------~~~i~ 175 (741)
T 2ecf_A 119 DAQRLLFPLG------GELYLYDLKQEGKAAVRQLTH-----GEGFATDAKLSPKGGFVSFIR------------GRNLW 175 (741)
T ss_dssp TSSEEEEEET------TEEEEEESSSCSTTSCCBCCC-----SSSCEEEEEECTTSSEEEEEE------------TTEEE
T ss_pred CCCEEEEEeC------CcEEEEECCCCCcceEEEccc-----CCcccccccCCCCCCEEEEEe------------CCcEE
Confidence 5555555442 67999999876 4433221 1111112222 2455555554 13699
Q ss_pred EEEcCcceEEEeccCCCCCC-------------CCCceeEEEeCCEEEEEecCCCCC-----------------------
Q 008089 170 ILNTETFVWKRATTSGNPPS-------------ARDSHTCSSWKNKIIVIGGEDGHD----------------------- 213 (578)
Q Consensus 170 ~yd~~t~~W~~~~~~g~~p~-------------~R~~h~~~~~~~~lyV~GG~~~~~----------------------- 213 (578)
++|+.+.....+...+.... .+.......-+++.++++..+...
T Consensus 176 ~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 176 VIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp EEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred EEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 99999888776643221100 001112222355544444322210
Q ss_pred ----cccCceEEEECCC-CceEEecCCCCCCCCCc-eeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEe
Q 008089 214 ----YYLSDVHILDTDT-LTWKELNTSGMVLSPRA-GHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 214 ----~~~~di~~yD~~t-~~W~~v~~~g~~p~~R~-~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~ 285 (578)
.....++++|+.+ ..-..+... ...... ...+. -+++.++++..+.. ....+|+++|+.+.....+..
T Consensus 256 ~g~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~-pDg~~l~~~~~~~~-~~~~~i~~~d~~~g~~~~~~~ 329 (741)
T 2ecf_A 256 AGDANVQVKLGVISPAEQAQTQWIDLG--KEQDIYLARVNW-RDPQHLSFQRQSRD-QKKLDLVEVTLASNQQRVLAH 329 (741)
T ss_dssp TTSCCCEEEEEEECSSTTCCCEEECCC--SCSSEEEEEEEE-EETTEEEEEEEETT-SSEEEEEEEETTTCCEEEEEE
T ss_pred CCCCCCeeEEEEEECCCCCceEEecCC--CCcceEEEEEEe-CCCCEEEEEEeccc-CCeEEEEEEECCCCceEEEEE
Confidence 0122688899888 776555431 011111 12223 33444444433221 124579999999998877654
No 96
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=93.45 E-value=6.6 Score=42.78 Aligned_cols=126 Identities=12% Similarity=0.128 Sum_probs=69.9
Q ss_pred eEEEECCEEEEEcccCCCCCCCcEEEEEC-CCC--eEEecccCCC--CCCC---CcccEEEEECCEEEEEccCCCCCCCC
Q 008089 89 SCTTVGENLYVFGGTDGMNPLRDLHILDT-SSH--TWISPSVRGE--GPEA---REGHSAALVGKRLFIFGGCGKSSNTN 160 (578)
Q Consensus 89 s~~~~~~kIYv~GG~~~~~~~~~v~~yD~-~t~--~W~~l~~~g~--~P~~---R~~hs~~~~~~~lyvfGG~~~~~~~~ 160 (578)
+-++.+++||+.... ...+++||. .+. .|+....... .+.. ....+.++.++++|+...
T Consensus 57 ~P~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------- 123 (571)
T 2ad6_A 57 APLVIGDMMYVHSAF-----PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------- 123 (571)
T ss_dssp CCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT--------
T ss_pred ccEEECCEEEEEeCC-----CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC--------
Confidence 345679999998753 246999998 765 4875321100 0000 112344567889988644
Q ss_pred CceeeceEEEEEcCcc--eEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCC--ceEEec
Q 008089 161 DEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTL--TWKELN 233 (578)
Q Consensus 161 ~~~~~ndv~~yd~~t~--~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~--~W~~v~ 233 (578)
...++.+|..+. .|+.-... .........+-++.++.+|+-.+... ......++.||.++. .|+.-.
T Consensus 124 ----dg~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 124 ----NGHLLALDAKTGKINWEVEVCD-PKVGSTLTQAPFVAKDTVLMGCSGAE-LGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCC-GGGTCBCCSCCEEETTEEEEECBCGG-GTCCCEEEEEETTTCCEEEEEES
T ss_pred ----CCEEEEEECCCCCEEEEecCCC-CCccceeccCCEEECCEEEEEecCCc-cCCCCEEEEEECCCCcEEEEEcc
Confidence 245889998765 58754211 00000111223456888877543211 012346999999765 487643
No 97
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=93.43 E-value=1.5 Score=43.92 Aligned_cols=185 Identities=15% Similarity=0.179 Sum_probs=91.4
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd 172 (578)
++++++.||.++ .+.++|..+..|........ .....-.+++.. ++++++.|+.+ ..+.++|
T Consensus 27 ~g~~las~~~D~-----~i~iw~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~s~D-----------~~v~iw~ 89 (345)
T 3fm0_A 27 AGTLLASCGGDR-----RIRIWGTEGDSWICKSVLSE-GHQRTVRKVAWSPCGNYLASASFD-----------ATTCIWK 89 (345)
T ss_dssp TSSCEEEEETTS-----CEEEEEEETTEEEEEEEECS-SCSSCEEEEEECTTSSEEEEEETT-----------SCEEEEE
T ss_pred CCCEEEEEcCCC-----eEEEEEcCCCcceeeeeecc-ccCCcEEEEEECCCCCEEEEEECC-----------CcEEEEE
Confidence 566777777654 47788888887753221100 011111122222 45667777732 3456677
Q ss_pred cCcceEEEeccCCCCCCCCCceeEEEe--CCEEEEEecCCCCCcccCceEEEECCCC-ceEEecCCCCCCCCCc-eeEEE
Q 008089 173 TETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTL-TWKELNTSGMVLSPRA-GHSTV 248 (578)
Q Consensus 173 ~~t~~W~~~~~~g~~p~~R~~h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t~-~W~~v~~~g~~p~~R~-~hs~v 248 (578)
..+..++.+..... ....-.++.+ ++.+++.|+.++ .+.+||+.+. .+..+.. ...... -.+++
T Consensus 90 ~~~~~~~~~~~~~~---h~~~v~~v~~sp~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~---~~~h~~~v~~~~ 157 (345)
T 3fm0_A 90 KNQDDFECVTTLEG---HENEVKSVAWAPSGNLLATCSRDK------SVWVWEVDEEDEYECVSV---LNSHTQDVKHVV 157 (345)
T ss_dssp ECCC-EEEEEEECC---CSSCEEEEEECTTSSEEEEEETTS------CEEEEEECTTSCEEEEEE---ECCCCSCEEEEE
T ss_pred ccCCCeEEEEEccC---CCCCceEEEEeCCCCEEEEEECCC------eEEEEECCCCCCeEEEEE---ecCcCCCeEEEE
Confidence 76666554432111 1111122222 567788887653 3778887654 2332222 111111 11222
Q ss_pred Ee-CCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCC
Q 008089 249 AF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (578)
Q Consensus 249 ~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (578)
.. ++.+++.|+.+. .+.+||..+..|..+..... .........+ ..++.+++.|+.+..
T Consensus 158 ~~p~~~~l~s~s~d~------~i~~w~~~~~~~~~~~~~~~---h~~~v~~l~~--sp~g~~l~s~s~D~~ 217 (345)
T 3fm0_A 158 WHPSQELLASASYDD------TVKLYREEEDDWVCCATLEG---HESTVWSLAF--DPSGQRLASCSDDRT 217 (345)
T ss_dssp ECSSSSCEEEEETTS------CEEEEEEETTEEEEEEEECC---CSSCEEEEEE--CTTSSEEEEEETTSC
T ss_pred ECCCCCEEEEEeCCC------cEEEEEecCCCEEEEEEecC---CCCceEEEEE--CCCCCEEEEEeCCCe
Confidence 22 456677776543 48899999988876544311 1112222223 345666777776544
No 98
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=93.41 E-value=6.6 Score=42.86 Aligned_cols=255 Identities=16% Similarity=0.109 Sum_probs=126.7
Q ss_pred CcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcC--CCcEE-EeeecCCCCCCCcceeEEEE-----CC-EEEEEcc
Q 008089 32 RWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTV--NQTWS-QPVIKGSPPTPRDSHSCTTV-----GE-NLYVFGG 102 (578)
Q Consensus 32 R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~--t~~W~-~l~~~g~~P~~R~~hs~~~~-----~~-kIYv~GG 102 (578)
..-|..+...+++++|+.+. .+.+.+||+. +.+-. ++. .|..| ..++.. ++ .+|+..-
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~-------dg~V~viD~~~~t~~~v~~i~-~G~~P-----~~ia~s~~~~pDGk~l~v~n~ 263 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGR-------DGKVNMIDLWMKEPTTVAEIK-IGSEA-----RSIETSKMEGWEDKYAIAGAY 263 (567)
T ss_dssp SCEEEEEECTTSCEEEEEET-------TSEEEEEETTSSSCCEEEEEE-CCSEE-----EEEEECCSTTCTTTEEEEEEE
T ss_pred CCccceEECCCCCEEEEEcC-------CCeEEEEECCCCCCcEeEEEe-cCCCC-----ceeEEccccCCCCCEEEEEEc
Confidence 33466666667788887542 2469999995 44322 222 12211 223332 44 5666643
Q ss_pred cCCCCCCCcEEEEECCCCeEEe-cccCCC-------CCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcC
Q 008089 103 TDGMNPLRDLHILDTSSHTWIS-PSVRGE-------GPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTE 174 (578)
Q Consensus 103 ~~~~~~~~~v~~yD~~t~~W~~-l~~~g~-------~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~ 174 (578)
. -+.+.++|..+.+-.+ +++.+. .|.+|.....+..++..+++-=. ....+++.|..
T Consensus 264 ~-----~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~----------~~g~v~~vd~~ 328 (567)
T 1qks_A 264 W-----PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK----------ETGKILLVDYT 328 (567)
T ss_dssp E-----TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET----------TTTEEEEEETT
T ss_pred c-----CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec----------CCCeEEEEecC
Confidence 2 2468888987765432 222110 12333332222222222332110 13567777776
Q ss_pred cceEEEeccCCCCCCCCCceeEEEe-CC-EEEEEecCCCCCcccCceEEEECCCCceEEecCC-CCCCCCCceeEEEEe-
Q 008089 175 TFVWKRATTSGNPPSARDSHTCSSW-KN-KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS-GMVLSPRAGHSTVAF- 250 (578)
Q Consensus 175 t~~W~~~~~~g~~p~~R~~h~~~~~-~~-~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~-g~~p~~R~~hs~v~~- 250 (578)
+.....+.. .+..+.-|....- ++ .+|+... ..+.+.++|.++++-...-.. +..|.+..+... ..
T Consensus 329 ~~~~~~v~~---i~~~~~~~d~~~~pdgr~~~va~~------~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p 398 (567)
T 1qks_A 329 DLNNLKTTE---ISAERFLHDGGLDGSHRYFITAAN------ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHP 398 (567)
T ss_dssp CSSEEEEEE---EECCSSEEEEEECTTSCEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EET
T ss_pred CCccceeee---eeccccccCceECCCCCEEEEEeC------CCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECC
Confidence 655433332 2334555554433 33 4444432 246699999998875544444 555665444443 33
Q ss_pred -CCEEEEEcCccCCCCccCcEEEEECCCCc-----EEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCCCCccCc
Q 008089 251 -GKNLFVFGGFTDSQNLYDDLYMIDVDSGL-----WTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDD 324 (578)
Q Consensus 251 -~~~iyV~GG~~~~~~~~~dv~~ydi~t~~-----W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d 324 (578)
++.+|+.+-..+ +.|.++|..+.. |+.+............. .....+..+||---.+......+.
T Consensus 399 ~~g~v~~t~~~g~-----~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i----~~~p~~~~l~v~~~~~~~~~~~~~ 469 (567)
T 1qks_A 399 TFGPVWATSHMGD-----DSVALIGTDPEGHPDNAWKILDSFPALGGGSLFI----KTHPNSQYLYVDATLNPEAEISGS 469 (567)
T ss_dssp TTEEEEEEEBSSS-----SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCE----ECCTTCSEEEEECTTCSSHHHHTC
T ss_pred CCCcEEEeCCCCC-----CeEEEecCCCCCCccccCEEEEEEecCCCCCEEE----EeCCCCCeEEEecCCCCCcccCce
Confidence 256776653321 348888877633 87766532211111111 122556788884322222112456
Q ss_pred EEEEecccc
Q 008089 325 MYYLYTGLV 333 (578)
Q Consensus 325 ~~~l~~~~~ 333 (578)
+..+++...
T Consensus 470 v~v~d~~~~ 478 (567)
T 1qks_A 470 VAVFDIKAM 478 (567)
T ss_dssp EEEEEGGGC
T ss_pred EEEEECCcc
Confidence 778877655
No 99
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=93.37 E-value=12 Score=41.56 Aligned_cols=125 Identities=18% Similarity=0.140 Sum_probs=70.4
Q ss_pred eEEEECCEEEEEcccCCCCCCCcEEEEECCCC--eEEecccCCCC-----CCCCcccEEEEECCEEEEEccCCCCCCCCC
Q 008089 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSH--TWISPSVRGEG-----PEAREGHSAALVGKRLFIFGGCGKSSNTND 161 (578)
Q Consensus 89 s~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~-----P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~ 161 (578)
+-++.+++||+.... ..++.+|..+. .|+.-...... .......+.++.+++||+...
T Consensus 61 ~P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--------- 125 (668)
T 1kv9_A 61 TPLFHDGVIYTSMSW------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL--------- 125 (668)
T ss_dssp CCEEETTEEEEEEGG------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT---------
T ss_pred CCEEECCEEEEECCC------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC---------
Confidence 345679999998652 46999998875 48753211000 000112234567888887543
Q ss_pred ceeeceEEEEEcCcc--eEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCc--eEEec
Q 008089 162 EVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELN 233 (578)
Q Consensus 162 ~~~~ndv~~yd~~t~--~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~--W~~v~ 233 (578)
...++.+|..+. .|+.-... .........+.++.++.+|+-.+.. .......++.||.++.+ |+.-.
T Consensus 126 ---dg~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~~~~v~vg~~~~-~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 126 ---DGRLIALDAKTGKAIWSQQTTD-PAKPYSITGAPRVVKGKVIIGNGGA-EYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp ---TSEEEEEETTTCCEEEEEECSC-TTSSCBCCSCCEEETTEEEECCBCT-TTCCBCEEEEEETTTCCEEEEEES
T ss_pred ---CCEEEEEECCCCCEeeeeccCC-CCCcceecCCCEEECCEEEEeCCCC-CcCCCCEEEEEECCCCcEEEEecc
Confidence 246889998765 58765321 1111112223355688887743221 11134569999998764 87653
No 100
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=93.36 E-value=4.3 Score=40.83 Aligned_cols=225 Identities=14% Similarity=0.098 Sum_probs=105.9
Q ss_pred EEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEe---eecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCC
Q 008089 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQP---VIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLR 110 (578)
Q Consensus 36 s~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l---~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~ 110 (578)
.+++...++.| +.|+.+ ..+.++|+.+++-... ...+. ...-.++.+ +++.++.|+.++
T Consensus 86 ~~~~~s~d~~l-~~~s~d------g~v~lWd~~~~~~~~~~~~~~~~H----~~~V~~v~~spdg~~l~sgs~d~----- 149 (344)
T 4gqb_B 86 ADLTWVGERGI-LVASDS------GAVELWELDENETLIVSKFCKYEH----DDIVSTVSVLSSGTQAVSGSKDI----- 149 (344)
T ss_dssp EEEEEETTTEE-EEEETT------SEEEEEEECTTSSCEEEEEEEECC----SSCEEEEEECTTSSEEEEEETTS-----
T ss_pred EEEEEeCCCeE-EEEECC------CEEEEEeccCCCceeEeeccccCC----CCCEEEEEECCCCCEEEEEeCCC-----
Confidence 34444445544 455532 3578888877642211 10111 111112222 667777887654
Q ss_pred cEEEEECCCCeEEecccCCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCC
Q 008089 111 DLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (578)
Q Consensus 111 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p 188 (578)
.+.++|+.+.+-...- .+. . ..-.+++.. +..+++.|+.+ ..+.++|+.+.+-...-. ..
T Consensus 150 ~i~iwd~~~~~~~~~~-~~h--~-~~V~~~~~~~~~~~~l~s~s~D-----------~~v~iwd~~~~~~~~~~~---~~ 211 (344)
T 4gqb_B 150 CIKVWDLAQQVVLSSY-RAH--A-AQVTCVAASPHKDSVFLSCSED-----------NRILLWDTRCPKPASQIG---CS 211 (344)
T ss_dssp CEEEEETTTTEEEEEE-CCC--S-SCEEEEEECSSCTTEEEEEETT-----------SCEEEEETTSSSCEEECC-----
T ss_pred eEEEEECCCCcEEEEE-cCc--C-CceEEEEecCCCCCceeeeccc-----------cccccccccccceeeeee---cc
Confidence 4888999887653321 110 0 011122222 23577777732 347788887765332210 01
Q ss_pred CCCCceeEEEe---CCEEEEEecCCCCCcccCceEEEECCCCceE-EecCCCCCCCCCceeEEEEe--CCEEEEEcCccC
Q 008089 189 SARDSHTCSSW---KNKIIVIGGEDGHDYYLSDVHILDTDTLTWK-ELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTD 262 (578)
Q Consensus 189 ~~R~~h~~~~~---~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~-~v~~~g~~p~~R~~hs~v~~--~~~iyV~GG~~~ 262 (578)
.......++.+ ++.+++.|+.++ .+.+||+.+.+-. .+.. ....-.+++.. +.++++.|+.+.
T Consensus 212 ~~~~~~~~~~~~p~~~~~l~sg~~dg------~v~~wd~~~~~~~~~~~~-----h~~~v~~v~fsp~g~~~lasgs~D~ 280 (344)
T 4gqb_B 212 APGYLPTSLAWHPQQSEVFVFGDENG------TVSLVDTKSTSCVLSSAV-----HSQCVTGLVFSPHSVPFLASLSEDC 280 (344)
T ss_dssp --CCCEEEEEECSSCTTEEEEEETTS------EEEEEESCC--CCEEEEC-----CSSCEEEEEECSSSSCCEEEEETTS
T ss_pred eeeccceeeeecCCCCcceEEeccCC------cEEEEECCCCcEEEEEcC-----CCCCEEEEEEccCCCeEEEEEeCCC
Confidence 11111222222 456788887543 4788898764321 1111 11111222222 235666666532
Q ss_pred CCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCC
Q 008089 263 SQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (578)
Q Consensus 263 ~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (578)
.|.+||..++.-..+ .+. .....++.+ ...+..+++.||.+..
T Consensus 281 ------~i~vwd~~~~~~~~~--~~H----~~~V~~v~~-sp~~~~llas~s~D~~ 323 (344)
T 4gqb_B 281 ------SLAVLDSSLSELFRS--QAH----RDFVRDATW-SPLNHSLLTTVGWDHQ 323 (344)
T ss_dssp ------CEEEECTTCCEEEEE--CCC----SSCEEEEEE-CSSSTTEEEEEETTSC
T ss_pred ------eEEEEECCCCcEEEE--cCC----CCCEEEEEE-eCCCCeEEEEEcCCCe
Confidence 388999988764332 211 112222223 2345567777887654
No 101
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=93.34 E-value=4.8 Score=37.73 Aligned_cols=187 Identities=11% Similarity=0.028 Sum_probs=93.5
Q ss_pred cccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCC-CeEEecccCCCCCCCCcc
Q 008089 59 TNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSS-HTWISPSVRGEGPEAREG 137 (578)
Q Consensus 59 ~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t-~~W~~l~~~g~~P~~R~~ 137 (578)
...++++|+.+++...+... + ......+..-+++.+++++ + ..++++|+.+ .+...+.. ......-
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~---~-~~v~~~~~spdg~~l~~~~-~-----~~i~~~d~~~~~~~~~~~~---~~~~~~~ 87 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQT---P-ELFEAPNWSPDGKYLLLNS-E-----GLLYRLSLAGDPSPEKVDT---GFATICN 87 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEE---S-SCCEEEEECTTSSEEEEEE-T-----TEEEEEESSSCCSCEECCC---TTCCCBC
T ss_pred ceeEEEEeCCCCceeeeccC---C-cceEeeEECCCCCEEEEEc-C-----CeEEEEeCCCCCCceEecc---ccccccc
Confidence 35799999998887764421 1 1111112222556566654 1 3799999988 76654431 1111111
Q ss_pred cEEEE-ECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEe-CCE-EEEEecCCCCCc
Q 008089 138 HSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNK-IIVIGGEDGHDY 214 (578)
Q Consensus 138 hs~~~-~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~-~~~-lyV~GG~~~~~~ 214 (578)
..++. .+++.+++++.... ....+|.++..+.....+.... . ...+... +++ |++.++.++.
T Consensus 88 ~~~~~spdg~~l~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~-----~-~~~~~~spdg~~l~~~~~~~~~-- 152 (297)
T 2ojh_A 88 NDHGISPDGALYAISDKVEF-------GKSAIYLLPSTGGTPRLMTKNL-----P-SYWHGWSPDGKSFTYCGIRDQV-- 152 (297)
T ss_dssp SCCEECTTSSEEEEEECTTT-------SSCEEEEEETTCCCCEECCSSS-----S-EEEEEECTTSSEEEEEEEETTE--
T ss_pred cceEECCCCCEEEEEEeCCC-------CcceEEEEECCCCceEEeecCC-----C-ccceEECCCCCEEEEEECCCCc--
Confidence 22222 24555555552111 2457888888777655553211 1 2222222 444 5544443321
Q ss_pred ccCceEEEECCCCceEEecCCCCCCCCCceeEEEE-eCCEEEEEcCccCCCCccCcEEEEECCCCcEEEE
Q 008089 215 YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (578)
Q Consensus 215 ~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~-~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l 283 (578)
-.+|.+|..+.....+... .... ..+.. -+++.+++++..+ -...+|.+++.......+
T Consensus 153 --~~l~~~~~~~~~~~~~~~~----~~~~-~~~~~s~dg~~l~~~~~~~---~~~~i~~~~~~~~~~~~~ 212 (297)
T 2ojh_A 153 --FDIYSMDIDSGVETRLTHG----EGRN-DGPDYSPDGRWIYFNSSRT---GQMQIWRVRVDGSSVERI 212 (297)
T ss_dssp --EEEEEEETTTCCEEECCCS----SSCE-EEEEECTTSSEEEEEECTT---SSCEEEEEETTSSCEEEC
T ss_pred --eEEEEEECCCCcceEcccC----CCcc-ccceECCCCCEEEEEecCC---CCccEEEECCCCCCcEEE
Confidence 3578888887776655431 1111 22222 2444444433211 134688888877776654
No 102
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=93.31 E-value=1.7 Score=43.85 Aligned_cols=179 Identities=14% Similarity=0.108 Sum_probs=86.6
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYIL 171 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~y 171 (578)
+++.++.|+.++ .+.+||+.+.+....- .+ .. ..-.+++.. ++.+++.||.. ..+.++
T Consensus 150 dg~~l~sgs~dg-----~v~iwd~~~~~~~~~~-~~--h~-~~v~~v~~s~~~~~~~~s~~~d-----------g~v~~w 209 (357)
T 4g56_B 150 DGTQAVSGGKDF-----SVKVWDLSQKAVLKSY-NA--HS-SEVNCVAACPGKDTIFLSCGED-----------GRILLW 209 (357)
T ss_dssp SSSEEEEEETTS-----CEEEEETTTTEEEEEE-CC--CS-SCEEEEEECTTCSSCEEEEETT-----------SCEEEC
T ss_pred CCCEEEEEeCCC-----eEEEEECCCCcEEEEE-cC--CC-CCEEEEEEccCCCceeeeeccC-----------CceEEE
Confidence 567777787654 4888999887654321 11 00 011122222 23466667631 346677
Q ss_pred EcCcceEEEeccCCCCCCCCCceeEEEe---CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEE
Q 008089 172 NTETFVWKRATTSGNPPSARDSHTCSSW---KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV 248 (578)
Q Consensus 172 d~~t~~W~~~~~~g~~p~~R~~h~~~~~---~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v 248 (578)
|+.+.+-.... ..........++.+ ++.+++.|+.++ .+.+||+.+.+-...-. . ....-.+++
T Consensus 210 d~~~~~~~~~~---~~~~~~~~v~~v~~sp~~~~~la~g~~d~------~i~~wd~~~~~~~~~~~---~-~~~~v~~l~ 276 (357)
T 4g56_B 210 DTRKPKPATRI---DFCASDTIPTSVTWHPEKDDTFACGDETG------NVSLVNIKNPDSAQTSA---V-HSQNITGLA 276 (357)
T ss_dssp CTTSSSCBCBC---CCTTCCSCEEEEEECTTSTTEEEEEESSS------CEEEEESSCGGGCEEEC---C-CSSCEEEEE
T ss_pred ECCCCceeeee---eeccccccccchhhhhcccceEEEeeccc------ceeEEECCCCcEeEEEe---c-cceeEEEEE
Confidence 77665432211 11111111223333 356777777543 37888987654221111 0 111112222
Q ss_pred Ee-C-CEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCC
Q 008089 249 AF-G-KNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (578)
Q Consensus 249 ~~-~-~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (578)
.. + .++++.|+.+. .|.+||+++...... .+ ......++++. +.++.+++.||.+..
T Consensus 277 ~sp~~~~~lasgs~D~------~i~iwd~~~~~~~~~--~~----H~~~V~~vafs-P~d~~~l~s~s~Dg~ 335 (357)
T 4g56_B 277 YSYHSSPFLASISEDC------TVAVLDADFSEVFRD--LS----HRDFVTGVAWS-PLDHSKFTTVGWDHK 335 (357)
T ss_dssp ECSSSSCCEEEEETTS------CEEEECTTSCEEEEE--CC----CSSCEEEEEEC-SSSTTEEEEEETTSC
T ss_pred EcCCCCCEEEEEeCCC------EEEEEECCCCcEeEE--CC----CCCCEEEEEEe-CCCCCEEEEEcCCCe
Confidence 22 3 35666666532 489999988764432 22 11222333332 235667777877654
No 103
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=93.29 E-value=7.2 Score=38.85 Aligned_cols=224 Identities=10% Similarity=0.008 Sum_probs=106.4
Q ss_pred EEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECC
Q 008089 39 AIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTS 118 (578)
Q Consensus 39 ~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~ 118 (578)
...++++|++....+. ...+|++|+.+.+..++. ..+.......+..-+++.++++..+ ..++++|+.
T Consensus 43 ~SpDg~~l~~~~~~~g----~~~l~~~d~~~g~~~~lt---~~~~~~~~~~~~spdg~~l~~~~~~-----~~l~~~d~~ 110 (388)
T 3pe7_A 43 FTRDGSKLLFGGAFDG----PWNYYLLDLNTQVATQLT---EGRGDNTFGGFLSPDDDALFYVKDG-----RNLMRVDLA 110 (388)
T ss_dssp BCTTSCEEEEEECTTS----SCEEEEEETTTCEEEECC---CSSCBCSSSCEECTTSSEEEEEETT-----TEEEEEETT
T ss_pred CCCCCCEEEEEEcCCC----CceEEEEeCCCCceEEee---eCCCCCccceEEcCCCCEEEEEeCC-----CeEEEEECC
Confidence 3455665554433121 236999999998877754 1121111112223345433343322 479999999
Q ss_pred CCeEEecccCCCCCCCCcccEEEEE--CCEEEEE----ccCCCCCCC-------CCceeeceEEEEEcCcceEEEeccCC
Q 008089 119 SHTWISPSVRGEGPEAREGHSAALV--GKRLFIF----GGCGKSSNT-------NDEVYYNDLYILNTETFVWKRATTSG 185 (578)
Q Consensus 119 t~~W~~l~~~g~~P~~R~~hs~~~~--~~~lyvf----GG~~~~~~~-------~~~~~~ndv~~yd~~t~~W~~~~~~g 185 (578)
+.+-..+.. .+........... ++++++. +........ ........++++|+.+.+-..+...
T Consensus 111 ~g~~~~~~~---~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~- 186 (388)
T 3pe7_A 111 TLEENVVYQ---VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE- 186 (388)
T ss_dssp TCCEEEEEE---CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE-
T ss_pred CCcceeeee---chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC-
Confidence 877554331 2222111111111 2333221 110000000 0011236799999998877666421
Q ss_pred CCCCCCCceeEEEe-CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCC-ceeEEEEeCCEEEEEcCccCC
Q 008089 186 NPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPR-AGHSTVAFGKNLFVFGGFTDS 263 (578)
Q Consensus 186 ~~p~~R~~h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R-~~hs~v~~~~~iyV~GG~~~~ 263 (578)
.....+....- +++.+++............++.+|+.+.....+.. ..... ..+.+..-+++.+++......
T Consensus 187 ---~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~~~~spdg~~l~~~~~~~~ 260 (388)
T 3pe7_A 187 ---NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT---HAEGESCTHEFWVPDGSALVYVSYLKG 260 (388)
T ss_dssp ---SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC---CCTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred ---CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee---CCCCcccccceECCCCCEEEEEecCCC
Confidence 11223333344 56655554432222234579999998877666643 11111 111122224443333332211
Q ss_pred CCccCcEEEEECCCCcEEEEEe
Q 008089 264 QNLYDDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 264 ~~~~~dv~~ydi~t~~W~~l~~ 285 (578)
.....|+++|+.++.-+.+..
T Consensus 261 -~~~~~l~~~d~~~g~~~~l~~ 281 (388)
T 3pe7_A 261 -SPDRFIYSADPETLENRQLTS 281 (388)
T ss_dssp -CCCEEEEEECTTTCCEEEEEE
T ss_pred -CCcceEEEEecCCCceEEEEc
Confidence 111249999999998777654
No 104
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=93.26 E-value=1.3 Score=44.54 Aligned_cols=108 Identities=9% Similarity=-0.016 Sum_probs=50.7
Q ss_pred ceEEEEEcCcceEEEeccCC-CC-CCCCCceeEEE-eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCC---
Q 008089 166 NDLYILNTETFVWKRATTSG-NP-PSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVL--- 239 (578)
Q Consensus 166 ndv~~yd~~t~~W~~~~~~g-~~-p~~R~~h~~~~-~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p--- 239 (578)
..+.+||+.+......-... .. +....-.+++. .++.+++.|+.++. ...+.+||+.+.+-...-.....+
T Consensus 207 g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~---~g~i~i~d~~~~~~~~~~~~~~~~~~~ 283 (397)
T 1sq9_A 207 GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS---FGCITLYETEFGERIGSLSVPTHSSQA 283 (397)
T ss_dssp SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT---EEEEEEEETTTCCEEEEECBC------
T ss_pred CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCC---CceEEEEECCCCcccceeccCcccccc
Confidence 45888998876543321100 00 00111122222 25667777764311 145889998766433221100000
Q ss_pred ------CCCceeEEEEe-CCEEEEEcCccCCCCccCcEEEEECCCCcEEE
Q 008089 240 ------SPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (578)
Q Consensus 240 ------~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~ 282 (578)
....-.++... ++++++.|+.+ ..|.+||+.+..-..
T Consensus 284 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~ 327 (397)
T 1sq9_A 284 SLGEFAHSSWVMSLSFNDSGETLCSAGWD------GKLRFWDVKTKERIT 327 (397)
T ss_dssp --CCBSBSSCEEEEEECSSSSEEEEEETT------SEEEEEETTTTEEEE
T ss_pred cccccccCCcEEEEEECCCCCEEEEEeCC------CeEEEEEcCCCceeE
Confidence 11111222222 45666777643 348999998875433
No 105
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=93.19 E-value=2 Score=43.30 Aligned_cols=205 Identities=13% Similarity=0.062 Sum_probs=96.2
Q ss_pred EEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCC----C-cEEEeeecCCCCCCCcceeEEEE-C-CEEEEEcccCCCCC
Q 008089 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVN----Q-TWSQPVIKGSPPTPRDSHSCTTV-G-ENLYVFGGTDGMNP 108 (578)
Q Consensus 36 s~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t----~-~W~~l~~~g~~P~~R~~hs~~~~-~-~kIYv~GG~~~~~~ 108 (578)
.++.+..++.+++.|+.+ ..+.+||..+ . .-..+. ... ..-.++... + +++++.|+.++
T Consensus 71 ~~~~~s~~~~~l~~~~~d------g~v~vw~~~~~~~~~~~~~~~~---~h~--~~v~~~~~~~~~~~~l~s~~~dg--- 136 (416)
T 2pm9_A 71 NDLDWSHNNKIIAGALDN------GSLELYSTNEANNAINSMARFS---NHS--SSVKTVKFNAKQDNVLASGGNNG--- 136 (416)
T ss_dssp EEEEECSSSSCEEEEESS------SCEEEECCSSTTSCCCEEEECC---CSS--SCCCEEEECSSSTTBEEEECSSS---
T ss_pred EEEEECCCCCeEEEEccC------CeEEEeecccccccccchhhcc---CCc--cceEEEEEcCCCCCEEEEEcCCC---
Confidence 344444344456666643 3578888876 1 222211 111 111122222 2 66777777653
Q ss_pred CCcEEEEECCCCe------EEecccCCCCCCCCcccEEEEEC--CEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEE
Q 008089 109 LRDLHILDTSSHT------WISPSVRGEGPEAREGHSAALVG--KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR 180 (578)
Q Consensus 109 ~~~v~~yD~~t~~------W~~l~~~g~~P~~R~~hs~~~~~--~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~ 180 (578)
.+.+||+.+.. -.. ...........-.+++... +.+++.|+. ...+.+||+.+.....
T Consensus 137 --~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~v~iwd~~~~~~~~ 202 (416)
T 2pm9_A 137 --EIFIWDMNKCTESPSNYTPL-TPGQSMSSVDEVISLAWNQSLAHVFASAGS-----------SNFASIWDLKAKKEVI 202 (416)
T ss_dssp --CEEBCBTTTTSSCTTTCCCB-CCCCSCCSSCCCCEEEECSSCTTEEEEESS-----------SSCEEEEETTTTEEEE
T ss_pred --eEEEEECCCCcccccccccc-ccccccCCCCCeeEEEeCCCCCcEEEEEcC-----------CCCEEEEECCCCCcce
Confidence 48888887654 110 0000001111122333332 467777773 2457889988776543
Q ss_pred eccCCCCCC--CCCceeEEEe-C-CEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCC--CCCceeEEEEe--CC
Q 008089 181 ATTSGNPPS--ARDSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVL--SPRAGHSTVAF--GK 252 (578)
Q Consensus 181 ~~~~g~~p~--~R~~h~~~~~-~-~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p--~~R~~hs~v~~--~~ 252 (578)
.-....... ...-.+++.. + ..+++.|+.++.. ..+.+||+.+..-. +.. .. ....-.++... ++
T Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~---~~i~~~d~~~~~~~-~~~---~~~~~~~~v~~~~~s~~~~ 275 (416)
T 2pm9_A 203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDND---PSILIWDLRNANTP-LQT---LNQGHQKGILSLDWCHQDE 275 (416)
T ss_dssp EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSS---CCCCEEETTSTTSC-SBC---CCSCCSSCEEEEEECSSCS
T ss_pred EEeccccccccCCceEEEEECCCCCCEEEEEECCCCC---ceEEEEeCCCCCCC-cEE---eecCccCceeEEEeCCCCC
Confidence 321100000 1111222222 3 3577777655321 24788898764211 111 11 11112223332 56
Q ss_pred EEEEEcCccCCCCccCcEEEEECCCCcEE
Q 008089 253 NLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (578)
Q Consensus 253 ~iyV~GG~~~~~~~~~dv~~ydi~t~~W~ 281 (578)
.+++.|+.+ ..+.+||+.+..-.
T Consensus 276 ~~l~s~~~d------g~v~~wd~~~~~~~ 298 (416)
T 2pm9_A 276 HLLLSSGRD------NTVLLWNPESAEQL 298 (416)
T ss_dssp SCEEEEESS------SEEEEECSSSCCEE
T ss_pred CeEEEEeCC------CCEEEeeCCCCccc
Confidence 677777753 24899999887543
No 106
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=93.17 E-value=6 Score=40.76 Aligned_cols=145 Identities=13% Similarity=0.144 Sum_probs=77.4
Q ss_pred EEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEec
Q 008089 46 LYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISP 125 (578)
Q Consensus 46 Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l 125 (578)
+++.|+.+ ..+.+||..+.+-...- .+ ........+..-++..++.|+.++ .+.+||+.+.+-...
T Consensus 282 ~l~~~~~d------~~i~vwd~~~~~~~~~~-~~--~~~~v~~~~~~~~~~~l~sg~~dg-----~i~vwd~~~~~~~~~ 347 (464)
T 3v7d_B 282 IVVSGSYD------NTLIVWDVAQMKCLYIL-SG--HTDRIYSTIYDHERKRCISASMDT-----TIRIWDLENGELMYT 347 (464)
T ss_dssp EEEEEETT------SCEEEEETTTTEEEEEE-CC--CSSCEEEEEEETTTTEEEEEETTS-----CEEEEETTTTEEEEE
T ss_pred EEEEEeCC------CeEEEEECCCCcEEEEe-cC--CCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCcEEEE
Confidence 55666643 35899999876644321 11 111111112222556677777553 489999988764321
Q ss_pred ccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEE
Q 008089 126 SVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIV 205 (578)
Q Consensus 126 ~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV 205 (578)
- .+ ......+....+..++.|+. ...+.+||+.+..-..... ........+...++.+++
T Consensus 348 ~-~~----h~~~v~~~~~~~~~l~s~s~-----------dg~v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~ 407 (464)
T 3v7d_B 348 L-QG----HTALVGLLRLSDKFLVSAAA-----------DGSIRGWDANDYSRKFSYH----HTNLSAITTFYVSDNILV 407 (464)
T ss_dssp E-CC----CSSCEEEEEECSSEEEEEET-----------TSEEEEEETTTCCEEEEEE----CTTCCCEEEEEECSSEEE
T ss_pred E-eC----CCCcEEEEEEcCCEEEEEeC-----------CCcEEEEECCCCceeeeec----CCCCccEEEEEeCCCEEE
Confidence 1 11 11222334445666666663 2457788888755322211 111222334445777777
Q ss_pred EecCCCCCcccCceEEEECCCCceEE
Q 008089 206 IGGEDGHDYYLSDVHILDTDTLTWKE 231 (578)
Q Consensus 206 ~GG~~~~~~~~~di~~yD~~t~~W~~ 231 (578)
.|+ + +.+.+||+.+.+-..
T Consensus 408 ~~~-d------g~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 408 SGS-E------NQFNIYNLRSGKLVH 426 (464)
T ss_dssp EEE-T------TEEEEEETTTCCEEE
T ss_pred Eec-C------CeEEEEECCCCcEEe
Confidence 776 2 348999998876554
No 107
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.14 E-value=6.6 Score=39.09 Aligned_cols=158 Identities=9% Similarity=-0.013 Sum_probs=79.8
Q ss_pred CCcEEEEECCCCeEEecccCCCCCCCCcccEEEEEC--CE-EEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCC
Q 008089 109 LRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG--KR-LFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG 185 (578)
Q Consensus 109 ~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~--~~-lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g 185 (578)
...++++|+.+.+...+.. ............ +. |++... . ........++++|+.+..+..+...
T Consensus 167 ~~~l~~~d~~~g~~~~~~~-----~~~~~~~~~~sp~dg~~l~~~~~-~-----~~~~~~~~l~~~d~~~~~~~~l~~~- 234 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQ-----DTAWLGHPIYRPFDDSTVGFCHE-G-----PHDLVDARMWLVNEDGSNVRKIKEH- 234 (396)
T ss_dssp CEEEEEEETTTCCEEEEEE-----ESSCEEEEEEETTEEEEEEEEEC-S-----CSSSCSCCCEEEETTSCCCEESSCC-
T ss_pred cceEEEEECCCCcEEeecc-----CCcccccceECCCCCCEEEEEec-C-----CCCCCCceEEEEECCCCceeEeecc-
Confidence 3579999999887765541 111122233332 44 444322 1 0111235789999988877766421
Q ss_pred CCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCC-
Q 008089 186 NPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDS- 263 (578)
Q Consensus 186 ~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~- 263 (578)
.+.....+....-+++.+++....... ....++++|+.+.....+.. .+ ... .+..- +++++++.+....
T Consensus 235 -~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~l~~~d~~~g~~~~l~~---~~--~~~-~~~s~~dg~~l~~~~~~~p~ 306 (396)
T 3c5m_A 235 -AEGESCTHEFWIPDGSAMAYVSYFKGQ-TDRVIYKANPETLENEEVMV---MP--PCS-HLMSNFDGSLMVGDGCDAPV 306 (396)
T ss_dssp -CTTEEEEEEEECTTSSCEEEEEEETTT-CCEEEEEECTTTCCEEEEEE---CC--SEE-EEEECSSSSEEEEEECCC--
T ss_pred -CCCccccceEECCCCCEEEEEecCCCC-ccceEEEEECCCCCeEEeee---CC--CCC-CCccCCCCceEEEecCCcce
Confidence 010001111122255544443322111 11349999999888776653 22 111 22333 5666666442110
Q ss_pred ---------CCccCcEEEEECCCCcEEEEEeC
Q 008089 264 ---------QNLYDDLYMIDVDSGLWTKVITT 286 (578)
Q Consensus 264 ---------~~~~~dv~~ydi~t~~W~~l~~~ 286 (578)
......|+++|+.++....+...
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 338 (396)
T 3c5m_A 307 DVADADSYNIENDPFLYVLNTKAKSAQKLCKH 338 (396)
T ss_dssp --------CCCCCCEEEEEETTTTBCCEEEEC
T ss_pred eeccccccccCCCCcEEEEecccCceEEccCC
Confidence 01235799999999887777653
No 108
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=93.05 E-value=3.9 Score=44.21 Aligned_cols=221 Identities=15% Similarity=0.112 Sum_probs=108.0
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CC-EEEEEcccCCCCCCCcEEEEEC--C
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GE-NLYVFGGTDGMNPLRDLHILDT--S 118 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~-kIYv~GG~~~~~~~~~v~~yD~--~ 118 (578)
++.+|+.+.. .+.+.++|..+++-...-..+. .-|+++.. ++ .+|+.+ .+ +.+.+||+ .
T Consensus 148 ~~~~~vs~~~------d~~V~v~D~~t~~~~~~i~~g~-----~~~~v~~spdg~~l~v~~-~d-----~~V~v~D~~~~ 210 (543)
T 1nir_A 148 PNLFSVTLRD------AGQIALVDGDSKKIVKVIDTGY-----AVHISRMSASGRYLLVIG-RD-----ARIDMIDLWAK 210 (543)
T ss_dssp GGEEEEEEGG------GTEEEEEETTTCCEEEEEECST-----TEEEEEECTTSCEEEEEE-TT-----SEEEEEETTSS
T ss_pred CCEEEEEEcC------CCeEEEEECCCceEEEEEecCc-----ccceEEECCCCCEEEEEC-CC-----CeEEEEECcCC
Confidence 4567777653 2468899998876543211121 13544333 44 566654 32 67999999 6
Q ss_pred CCeEEe-cccCCCCCCCCcccEEEEE-----CC-EEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEe-ccCCC----
Q 008089 119 SHTWIS-PSVRGEGPEAREGHSAALV-----GK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRA-TTSGN---- 186 (578)
Q Consensus 119 t~~W~~-l~~~g~~P~~R~~hs~~~~-----~~-~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~-~~~g~---- 186 (578)
+.+-.. ++ ....-+.+++. ++ .+|+..- ..+.+.++|..+.+-... ...+.
T Consensus 211 t~~~~~~i~------~g~~p~~va~sp~~~~dg~~l~v~~~-----------~~~~v~v~D~~t~~~~~~i~~~g~~~~~ 273 (543)
T 1nir_A 211 EPTKVAEIK------IGIEARSVESSKFKGYEDRYTIAGAY-----------WPPQFAIMDGETLEPKQIVSTRGMTVDT 273 (543)
T ss_dssp SCEEEEEEE------CCSEEEEEEECCSTTCTTTEEEEEEE-----------ESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred CCcEEEEEe------cCCCcceEEeCCCcCCCCCEEEEEEc-----------cCCeEEEEeccccccceeecccCcccCc
Confidence 765432 22 11122233333 34 4555432 135577888877654332 22111
Q ss_pred ---CCCCCCceeEEEe-CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCE-EEEEcCc
Q 008089 187 ---PPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKN-LFVFGGF 260 (578)
Q Consensus 187 ---~p~~R~~h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~-iyV~GG~ 260 (578)
.|.+|..+..... +..+|+-... .+.++++|..+..-..+.. .+..+.-+..+.. +++ +|+.+..
T Consensus 274 ~~~~~~~~v~~i~~s~~~~~~~vs~~~------~g~i~vvd~~~~~~l~~~~---i~~~~~~~~~~~spdg~~l~va~~~ 344 (543)
T 1nir_A 274 QTYHPEPRVAAIIASHEHPEFIVNVKE------TGKVLLVNYKDIDNLTVTS---IGAAPFLHDGGWDSSHRYFMTAANN 344 (543)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETT------TTEEEEEECTTSSSCEEEE---EECCSSCCCEEECTTSCEEEEEEGG
T ss_pred cccccCCceEEEEECCCCCEEEEEECC------CCeEEEEEecCCCcceeEE---eccCcCccCceECCCCCEEEEEecC
Confidence 1222322222233 3455554422 2458899987643211111 1122223333333 344 4443322
Q ss_pred cCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccc
Q 008089 261 TDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGC 315 (578)
Q Consensus 261 ~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~ 315 (578)
.+.|.++|..+++-......+..|.+..... ++ ...++.+|+.+..
T Consensus 345 ------~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~--~~-~p~~g~~~~s~~~ 390 (543)
T 1nir_A 345 ------SNKVAVIDSKDRRLSALVDVGKTPHPGRGAN--FV-HPKYGPVWSTSHL 390 (543)
T ss_dssp ------GTEEEEEETTTTEEEEEEECSSSBCCTTCEE--EE-ETTTEEEEEEEBS
T ss_pred ------CCeEEEEECCCCeEEEeeccCCCCCCCCCcc--cC-CCCCccEEEeccC
Confidence 2458999999987665545454454432222 11 2334677776643
No 109
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.03 E-value=2 Score=48.12 Aligned_cols=191 Identities=11% Similarity=0.035 Sum_probs=93.6
Q ss_pred cCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEEECC
Q 008089 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTS 118 (578)
Q Consensus 41 ~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~yD~~ 118 (578)
.+++ .+++|+.+ ..+.+||..+++....- .+. ...-.++.. ++..++.|+.+ ..+.+||+.
T Consensus 65 ~~~~-~l~~~~~d------g~i~vw~~~~~~~~~~~-~~~----~~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~~ 127 (814)
T 3mkq_A 65 ARKN-WIIVGSDD------FRIRVFNYNTGEKVVDF-EAH----PDYIRSIAVHPTKPYVLSGSDD-----LTVKLWNWE 127 (814)
T ss_dssp GGGT-EEEEEETT------SEEEEEETTTCCEEEEE-ECC----SSCEEEEEECSSSSEEEEEETT-----SEEEEEEGG
T ss_pred CCCC-EEEEEeCC------CeEEEEECCCCcEEEEE-ecC----CCCEEEEEEeCCCCEEEEEcCC-----CEEEEEECC
Confidence 4444 55666642 45899999887765422 111 111122222 45556666644 358888887
Q ss_pred CC-eEEecccCCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCcee
Q 008089 119 SH-TWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT 195 (578)
Q Consensus 119 t~-~W~~l~~~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~ 195 (578)
+. .....- .+ ....-.+++.. ++.+++.|+. ...+.+||+.+..-...... ........
T Consensus 128 ~~~~~~~~~-~~---~~~~v~~~~~~p~~~~~l~~~~~-----------dg~v~vwd~~~~~~~~~~~~---~~~~~v~~ 189 (814)
T 3mkq_A 128 NNWALEQTF-EG---HEHFVMCVAFNPKDPSTFASGCL-----------DRTVKVWSLGQSTPNFTLTT---GQERGVNY 189 (814)
T ss_dssp GTSEEEEEE-EC---CSSCEEEEEEETTEEEEEEEEET-----------TSEEEEEETTCSSCSEEEEC---CCTTCCCE
T ss_pred CCceEEEEE-cC---CCCcEEEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCcceeEEec---CCCCCEEE
Confidence 65 332211 11 11112233344 3457777773 24577888765432111110 11111122
Q ss_pred EEE-e--CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEE
Q 008089 196 CSS-W--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLY 271 (578)
Q Consensus 196 ~~~-~--~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~ 271 (578)
++. . ++.+++.|+.++ .+.+||..+..-...-. . ....-.+++.. ++.+++.|+.++ .+.
T Consensus 190 ~~~~~~~~~~~l~~~~~dg------~i~~~d~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~l~~~~~dg------~v~ 253 (814)
T 3mkq_A 190 VDYYPLPDKPYMITASDDL------TIKIWDYQTKSCVATLE---G-HMSNVSFAVFHPTLPIIISGSEDG------TLK 253 (814)
T ss_dssp EEECCSTTCCEEEEECTTS------EEEEEETTTTEEEEEEE---C-CSSCEEEEEECSSSSEEEEEETTS------CEE
T ss_pred EEEEECCCCCEEEEEeCCC------EEEEEECCCCcEEEEEc---C-CCCCEEEEEEcCCCCEEEEEeCCC------eEE
Confidence 222 2 667777777543 48889987765332211 0 11111122222 455777776532 488
Q ss_pred EEECCCCcEEE
Q 008089 272 MIDVDSGLWTK 282 (578)
Q Consensus 272 ~ydi~t~~W~~ 282 (578)
+||+.+..-..
T Consensus 254 vwd~~~~~~~~ 264 (814)
T 3mkq_A 254 IWNSSTYKVEK 264 (814)
T ss_dssp EEETTTCSEEE
T ss_pred EEECCCCcEEE
Confidence 99988865443
No 110
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=93.02 E-value=1.1 Score=44.15 Aligned_cols=196 Identities=12% Similarity=0.140 Sum_probs=94.6
Q ss_pred EEEE-cCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--C---CEEEEEcccCCCCCCC
Q 008089 37 CNAI-KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--G---ENLYVFGGTDGMNPLR 110 (578)
Q Consensus 37 ~v~v-~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~---~kIYv~GG~~~~~~~~ 110 (578)
++.+ .++..+++.|+.... ...+.+||..+.+.......+. ...-.++.+ + +.+++.|+.++
T Consensus 23 ~~~~~p~~~~l~~~~s~~~~---d~~v~iw~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~l~~~~~dg----- 90 (357)
T 3i2n_A 23 DCKWVPCSAKFVTMGNFARG---TGVIQLYEIQHGDLKLLREIEK----AKPIKCGTFGATSLQQRYLATGDFGG----- 90 (357)
T ss_dssp EEEECTTSSEEEEEEC--CC---CEEEEEEEECSSSEEEEEEEEE----SSCEEEEECTTCCTTTCCEEEEETTS-----
T ss_pred EEEEcCCCceEEEecCccCC---CcEEEEEeCCCCcccceeeecc----cCcEEEEEEcCCCCCCceEEEecCCC-----
Confidence 3344 345567777765321 2468899998877654321111 111122222 2 46777777553
Q ss_pred cEEEEECCCCe--EEecccCCCCCCCCcccEEEE-------ECCEEEEEccCCCCCCCCCceeeceEEEEEcCcce--EE
Q 008089 111 DLHILDTSSHT--WISPSVRGEGPEAREGHSAAL-------VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--WK 179 (578)
Q Consensus 111 ~v~~yD~~t~~--W~~l~~~g~~P~~R~~hs~~~-------~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~--W~ 179 (578)
.+.+||+.+.. ...+. + ....-.++.. .++.+++.|+. ...+.+||+.+.. ..
T Consensus 91 ~i~iwd~~~~~~~~~~~~--~---~~~~v~~~~~~~~~~~s~~~~~l~~~~~-----------d~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVK--G---HKEIINAIDGIGGLGIGEGAPEIVTGSR-----------DGTVKVWDPRQKDDPVA 154 (357)
T ss_dssp CEEEECTTSCSSCSEEEC--C---CSSCEEEEEEESGGGCC-CCCEEEEEET-----------TSCEEEECTTSCSSCSE
T ss_pred eEEEEeCCCCCccEEEEE--e---cccceEEEeeccccccCCCccEEEEEeC-----------CCeEEEEeCCCCCCcce
Confidence 48888877654 11111 0 0001111111 23556666663 2357788887654 23
Q ss_pred EeccCCCCCCCCCceeEE-----EeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe----
Q 008089 180 RATTSGNPPSARDSHTCS-----SWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF---- 250 (578)
Q Consensus 180 ~~~~~g~~p~~R~~h~~~-----~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~---- 250 (578)
.+..... ...+...+++ ..++.+++.|+.+ ..+.+||+.+..-..... ....-.++...
T Consensus 155 ~~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~-----~~~~v~~~~~~~~~~ 222 (357)
T 3i2n_A 155 NMEPVQG-ENKRDCWTVAFGNAYNQEERVVCAGYDN------GDIKLFDLRNMALRWETN-----IKNGVCSLEFDRKDI 222 (357)
T ss_dssp EECCCTT-SCCCCEEEEEEECCCC-CCCEEEEEETT------SEEEEEETTTTEEEEEEE-----CSSCEEEEEESCSSS
T ss_pred eccccCC-CCCCceEEEEEEeccCCCCCEEEEEccC------CeEEEEECccCceeeecC-----CCCceEEEEcCCCCC
Confidence 3321100 1111222222 1366777777654 348899998776433322 11122233333
Q ss_pred CCEEEEEcCccCCCCccCcEEEEECCCC
Q 008089 251 GKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (578)
Q Consensus 251 ~~~iyV~GG~~~~~~~~~dv~~ydi~t~ 278 (578)
++..++.|+.+ ..+.+||+.+.
T Consensus 223 ~~~~l~~~~~d------g~i~i~d~~~~ 244 (357)
T 3i2n_A 223 SMNKLVATSLE------GKFHVFDMRTQ 244 (357)
T ss_dssp SCCEEEEEEST------TEEEEEEEEEE
T ss_pred CCCEEEEECCC------CeEEEEeCcCC
Confidence 45667777643 24788887653
No 111
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=92.99 E-value=6.1 Score=37.16 Aligned_cols=192 Identities=11% Similarity=0.037 Sum_probs=94.9
Q ss_pred EEEEcCCCEEEE-EcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCCcEEE
Q 008089 37 CNAIKGGRFLYV-FGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHI 114 (578)
Q Consensus 37 ~v~v~~g~~Iyv-~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~ 114 (578)
++++..++.||+ .... .+.+++||..+........ ... ..-++++.. ++++|+... + +.+++
T Consensus 28 ~i~~~~~g~l~v~~~~~------~~~i~~~~~~~~~~~~~~~-~~~---~~p~~i~~~~~g~l~v~~~-~-----~~i~~ 91 (270)
T 1rwi_B 28 GVAVDSAGNVYVTSEGM------YGRVVKLATGSTGTTVLPF-NGL---YQPQGLAVDGAGTVYVTDF-N-----NRVVT 91 (270)
T ss_dssp EEEECTTCCEEEEECSS------SCEEEEECC-----EECCC-CSC---CSCCCEEECTTCCEEEEET-T-----TEEEE
T ss_pred ceEECCCCCEEEEccCC------CCcEEEecCCCcccceEee-CCc---CCcceeEECCCCCEEEEcC-C-----CEEEE
Confidence 444433345888 4332 2458889887665444321 111 112334333 567888764 1 36999
Q ss_pred EECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCc
Q 008089 115 LDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (578)
Q Consensus 115 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~ 193 (578)
||+.+........ .....-+++++. ++++|+.... ...+++++..+......... . ...-
T Consensus 92 ~d~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~-----------~~~i~~~~~~~~~~~~~~~~-~---~~~p 152 (270)
T 1rwi_B 92 LAAGSNNQTVLPF----DGLNYPEGLAVDTQGAVYVADRG-----------NNRVVKLAAGSKTQTVLPFT-G---LNDP 152 (270)
T ss_dssp ECTTCSCCEECCC----CSCSSEEEEEECTTCCEEEEEGG-----------GTEEEEECTTCCSCEECCCC-S---CCSC
T ss_pred EeCCCceEeeeec----CCcCCCcceEECCCCCEEEEECC-----------CCEEEEEECCCceeEeeccc-c---CCCc
Confidence 9988765443221 111122334443 4678886541 24577887766544332211 1 1111
Q ss_pred eeEEEe-CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEE
Q 008089 194 HTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLY 271 (578)
Q Consensus 194 h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~ 271 (578)
..++.. ++++|+.... .+.+.+||+.+..-......+ . ..-..++.. ++.+|+..... +.|+
T Consensus 153 ~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~~-~---~~p~~i~~d~~g~l~v~~~~~------~~v~ 216 (270)
T 1rwi_B 153 DGVAVDNSGNVYVTDTD------NNRVVKLEAESNNQVVLPFTD-I---TAPWGIAVDEAGTVYVTEHNT------NQVV 216 (270)
T ss_dssp CCEEECTTCCEEEEEGG------GTEEEEECTTTCCEEECCCSS-C---CSEEEEEECTTCCEEEEETTT------SCEE
T ss_pred eeEEEeCCCCEEEEECC------CCEEEEEecCCCceEeecccC-C---CCceEEEECCCCCEEEEECCC------CcEE
Confidence 233333 5678886532 245889998876544332111 1 112233333 34777765432 3489
Q ss_pred EEECCCCc
Q 008089 272 MIDVDSGL 279 (578)
Q Consensus 272 ~ydi~t~~ 279 (578)
+||+....
T Consensus 217 ~~~~~~~~ 224 (270)
T 1rwi_B 217 KLLAGSTT 224 (270)
T ss_dssp EECTTCSC
T ss_pred EEcCCCCc
Confidence 99987764
No 112
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=92.92 E-value=14 Score=41.00 Aligned_cols=199 Identities=9% Similarity=-0.029 Sum_probs=101.4
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCC-----------CCCCcEEEEECCCCeEEeccc
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGM-----------NPLRDLHILDTSSHTWISPSV 127 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~-----------~~~~~v~~yD~~t~~W~~l~~ 127 (578)
..++++|+.+++.......+ ... .+.+-. +++.++++..+.. .....++++++.+.......+
T Consensus 151 ~~i~v~d~~tg~~~~~~~~~----~~~-~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v 225 (710)
T 2xdw_A 151 VTIKFMKVDGAKELPDVLER----VKF-SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILC 225 (710)
T ss_dssp EEEEEEETTTTEEEEEEEEE----ECS-CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEE
T ss_pred EEEEEEECCCCCCCcccccC----ccc-ceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEE
Confidence 36999999999887643211 111 122222 5554444433322 234569999998765321010
Q ss_pred CCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCc------c--eEEEeccCCCCCCCCCceeEEE
Q 008089 128 RGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTET------F--VWKRATTSGNPPSARDSHTCSS 198 (578)
Q Consensus 128 ~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t------~--~W~~~~~~g~~p~~R~~h~~~~ 198 (578)
......+......... +++.+++.... .....++++++|+.+ . .+..+... ..........
T Consensus 226 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~------~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~----~~~~~~~~s~ 295 (710)
T 2xdw_A 226 AEFPDEPKWMGGAELSDDGRYVLLSIRE------GCDPVNRLWYCDLQQESNGITGILKWVKLIDN----FEGEYDYVTN 295 (710)
T ss_dssp ECCTTCTTCEEEEEECTTSCEEEEEEEC------SSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS----SSSCEEEEEE
T ss_pred eccCCCCeEEEEEEEcCCCCEEEEEEEc------cCCCccEEEEEECcccccccCCccceEEeeCC----CCcEEEEEec
Confidence 0011112222233332 34433333311 011246789999876 4 57777531 1111122233
Q ss_pred eCCEEEEEecCCCCCcccCceEEEECCCC---ceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEEEEE
Q 008089 199 WKNKIIVIGGEDGHDYYLSDVHILDTDTL---TWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMID 274 (578)
Q Consensus 199 ~~~~lyV~GG~~~~~~~~~di~~yD~~t~---~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~~yd 274 (578)
.++.||+.+..+. ....|+.+|+.+. .|+.+.... ....-..+... ++.+++...... ...|+++|
T Consensus 296 dg~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~lv~~~~~~g----~~~l~~~~ 365 (710)
T 2xdw_A 296 EGTVFTFKTNRHS---PNYRLINIDFTDPEESKWKVLVPEH---EKDVLEWVACVRSNFLVLCYLHDV----KNTLQLHD 365 (710)
T ss_dssp ETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEEECCC---SSCEEEEEEEETTTEEEEEEEETT----EEEEEEEE
T ss_pred cCCEEEEEECCCC---CCCEEEEEeCCCCCcccceeccCCC---CCCeEEEEEEEcCCEEEEEEEECC----EEEEEEEE
Confidence 4678888865432 2356999998875 588876411 11222334445 677776654432 34589999
Q ss_pred CCCCc-EEEE
Q 008089 275 VDSGL-WTKV 283 (578)
Q Consensus 275 i~t~~-W~~l 283 (578)
+.++. ...+
T Consensus 366 ~~~g~~~~~l 375 (710)
T 2xdw_A 366 LATGALLKIF 375 (710)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCCEEEec
Confidence 86654 4444
No 113
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=92.90 E-value=8.7 Score=38.72 Aligned_cols=200 Identities=17% Similarity=0.144 Sum_probs=93.7
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEE
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILD 116 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD 116 (578)
++.+..++.+++.|+.+ ..+.++|..+..-...- .+. .......+..-+++.++.||.++. +.+||
T Consensus 71 ~~~~sp~~~~l~s~s~D------~~v~iWd~~~~~~~~~~-~~h--~~~v~~~~~s~~g~~las~~~d~~-----v~iw~ 136 (380)
T 3iz6_a 71 SLDWTPEKNWIVSASQD------GRLIVWNALTSQKTHAI-KLH--CPWVMECAFAPNGQSVACGGLDSA-----CSIFN 136 (380)
T ss_dssp EEEECTTSSCEEEEETT------SEEEEEETTTTEEEEEE-ECC--CTTCCCCEECTTSSEEEECCSSSC-----CEEEE
T ss_pred EEEEcCCCCEEEEEeCC------CeEEEEECCCCccceEE-ecC--CCCEEEEEECCCCCEEEEeeCCCc-----EEEEE
Confidence 34443333355666643 35889998877644321 111 111222223336677888887643 56666
Q ss_pred CCCCeEEecccCCCCCCC--CcccE-----EEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCC
Q 008089 117 TSSHTWISPSVRGEGPEA--REGHS-----AALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 187 (578)
Q Consensus 117 ~~t~~W~~l~~~g~~P~~--R~~hs-----~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~ 187 (578)
+.+..-. .+..+.. ..+|. +... ++..++.|+. -..+.++|+.+..-...-.. ..
T Consensus 137 ~~~~~~~----~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~-----------D~~i~~wd~~~~~~~~~~~~-~~ 200 (380)
T 3iz6_a 137 LSSQADR----DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG-----------DQTCVLWDVTTGQRISIFGS-EF 200 (380)
T ss_dssp CCCCSSC----CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECT-----------TSCEEEECTTTCCEEEEECC-CS
T ss_pred CCCCccc----cCCccceeeccCCCcceEEEEEecCCCCEEEEECC-----------CCcEEEEEcCCCcEEEEeec-cc
Confidence 6543210 0111111 11221 1111 1234455552 23467788877654433211 11
Q ss_pred CCCCCc--eeEEE--eCCEEEEEecCCCCCcccCceEEEECCCC--ceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCc
Q 008089 188 PSARDS--HTCSS--WKNKIIVIGGEDGHDYYLSDVHILDTDTL--TWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGF 260 (578)
Q Consensus 188 p~~R~~--h~~~~--~~~~lyV~GG~~~~~~~~~di~~yD~~t~--~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~ 260 (578)
+..... .++.. .++.+++.|+.++. +.+||+... .-..+.. ....-.+++.. +++.++.|+.
T Consensus 201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~------v~~wd~~~~~~~~~~~~~-----h~~~v~~v~~~p~~~~l~s~s~ 269 (380)
T 3iz6_a 201 PSGHTADVLSLSINSLNANMFISGSCDTT------VRLWDLRITSRAVRTYHG-----HEGDINSVKFFPDGQRFGTGSD 269 (380)
T ss_dssp SSSCCSCEEEEEECSSSCCEEEEEETTSC------EEEEETTTTCCCCEEECC-----CSSCCCEEEECTTSSEEEEECS
T ss_pred CCCCccCeEEEEeecCCCCEEEEEECCCe------EEEEECCCCCcceEEECC-----cCCCeEEEEEecCCCeEEEEcC
Confidence 111111 11222 25678888886643 778887532 2222211 00111122222 4567777776
Q ss_pred cCCCCccCcEEEEECCCCcEEEE
Q 008089 261 TDSQNLYDDLYMIDVDSGLWTKV 283 (578)
Q Consensus 261 ~~~~~~~~dv~~ydi~t~~W~~l 283 (578)
+. .+.+||+.+..-...
T Consensus 270 D~------~i~lwd~~~~~~~~~ 286 (380)
T 3iz6_a 270 DG------TCRLFDMRTGHQLQV 286 (380)
T ss_dssp SS------CEEEEETTTTEEEEE
T ss_pred CC------eEEEEECCCCcEEEE
Confidence 43 489999998764443
No 114
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=92.88 E-value=2 Score=42.00 Aligned_cols=34 Identities=15% Similarity=0.031 Sum_probs=22.3
Q ss_pred eEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEE
Q 008089 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQ 74 (578)
Q Consensus 35 hs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~ 74 (578)
+..+...+++.+|+.+.. ...+++||+.+.+...
T Consensus 46 ~~~~~s~dg~~~~v~~~~------~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 46 GTAMMAPDNRTAYVLNNH------YGDIYGIDLDTCKNTF 79 (349)
T ss_dssp CEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEE
T ss_pred ceeEECCCCCEEEEEeCC------CCcEEEEeCCCCcEEE
Confidence 344445566778877642 2469999998877553
No 115
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=92.81 E-value=9.1 Score=38.72 Aligned_cols=180 Identities=14% Similarity=0.072 Sum_probs=92.7
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcc
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREG 137 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~ 137 (578)
+.+++||..++......... . ...-.++.+ ++++++.|+.++ .+.+||+.+.+....- . .....
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~---~-~~~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~-~----~~~~~ 178 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETD---E-STYVASVKWSHDGSFLSVGLGNG-----LVDIYDVESQTKLRTM-A----GHQAR 178 (401)
T ss_dssp TEEEEEETTTCCEEEEEECC---T-TCCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEEE-C----CCSSC
T ss_pred CeEEEeeCCCCcEeEeeecC---C-CCCEEEEEECCCCCEEEEECCCC-----eEEEEECcCCeEEEEe-c----CCCCc
Confidence 45999999988876543211 1 111222222 566777776553 5889998877653321 1 11112
Q ss_pred cEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcce--EEEeccCCCCCCCCCceeEEEe-CCEEEEEecCCCCCc
Q 008089 138 HSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--WKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDY 214 (578)
Q Consensus 138 hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~--W~~~~~~g~~p~~R~~h~~~~~-~~~lyV~GG~~~~~~ 214 (578)
..++..++.+++.|+. ...+.++|+.... -..+.. ....-.++... ++.+++.|+.++
T Consensus 179 v~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~--- 239 (401)
T 4aez_A 179 VGCLSWNRHVLSSGSR-----------SGAIHHHDVRIANHQIGTLQG-----HSSEVCGLAWRSDGLQLASGGNDN--- 239 (401)
T ss_dssp EEEEEEETTEEEEEET-----------TSEEEEEETTSSSCEEEEEEC-----CSSCEEEEEECTTSSEEEEEETTS---
T ss_pred eEEEEECCCEEEEEcC-----------CCCEEEEecccCcceeeEEcC-----CCCCeeEEEEcCCCCEEEEEeCCC---
Confidence 2223335556666763 2457788887322 122211 01111122222 567778887553
Q ss_pred ccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe--CCEEEEEcCccCCCCccCcEEEEECCCCcEEEE
Q 008089 215 YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (578)
Q Consensus 215 ~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~--~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l 283 (578)
.+.+||+.+..-..... .....-.++... +..+++.||... -..+.+||+.+..-...
T Consensus 240 ---~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~ll~~~~gs~----d~~i~i~d~~~~~~~~~ 299 (401)
T 4aez_A 240 ---VVQIWDARSSIPKFTKT----NHNAAVKAVAWCPWQSNLLATGGGTM----DKQIHFWNAATGARVNT 299 (401)
T ss_dssp ---CEEEEETTCSSEEEEEC----CCSSCCCEEEECTTSTTEEEEECCTT----TCEEEEEETTTCCEEEE
T ss_pred ---eEEEccCCCCCccEEec----CCcceEEEEEECCCCCCEEEEecCCC----CCEEEEEECCCCCEEEE
Confidence 48899988754332211 111111223333 446777775211 13499999988765443
No 116
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=92.68 E-value=0.21 Score=50.30 Aligned_cols=148 Identities=14% Similarity=0.153 Sum_probs=64.9
Q ss_pred EEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEEECCCCe-
Q 008089 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHT- 121 (578)
Q Consensus 45 ~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~yD~~t~~- 121 (578)
.+++.|+.+ ..+.+||..+..|..+. .+......-.++.+ ++++++.|+.++ .+.+||+.+..
T Consensus 24 ~~l~~~~~d------~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~s~d~-----~v~vwd~~~~~~ 89 (377)
T 3dwl_C 24 TEFVTTTAT------NQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSNRIVTCSQDR-----NAYVYEKRPDGT 89 (377)
T ss_dssp SEEECCCSS------SCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTCCEEEEETTS-----SEEEC------C
T ss_pred CEEEEecCC------CEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCCEEEEEeCCC-----eEEEEEcCCCCc
Confidence 366666643 34778888888776643 22211222222222 566777777653 48888887766
Q ss_pred EEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcce-EEEeccCCCCCCCCCceeEEEe
Q 008089 122 WISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV-WKRATTSGNPPSARDSHTCSSW 199 (578)
Q Consensus 122 W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~-W~~~~~~g~~p~~R~~h~~~~~ 199 (578)
|....... .....-.+++.. ++++++.|+. ...+.+||+.+.. |..+..... +....-.+++..
T Consensus 90 ~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~~~~~ 155 (377)
T 3dwl_C 90 WKQTLVLL--RLNRAATFVRWSPNEDKFAVGSG-----------ARVISVCYFEQENDWWVSKHLKR-PLRSTILSLDWH 155 (377)
T ss_dssp CCCEEECC--CCSSCEEEEECCTTSSCCEEEES-----------SSCEEECCC-----CCCCEEECS-SCCSCEEEEEEC
T ss_pred eeeeeEec--ccCCceEEEEECCCCCEEEEEec-----------CCeEEEEEECCcccceeeeEeec-ccCCCeEEEEEc
Confidence 43322110 111111122222 3556666663 1346677776553 221211101 011111222222
Q ss_pred -CCEEEEEecCCCCCcccCceEEEECCC
Q 008089 200 -KNKIIVIGGEDGHDYYLSDVHILDTDT 226 (578)
Q Consensus 200 -~~~lyV~GG~~~~~~~~~di~~yD~~t 226 (578)
++++++.|+.++ .+.+||+.+
T Consensus 156 ~~~~~l~~~~~d~------~i~iwd~~~ 177 (377)
T 3dwl_C 156 PNNVLLAAGCADR------KAYVLSAYV 177 (377)
T ss_dssp TTSSEEEEEESSS------CEEEEEECC
T ss_pred CCCCEEEEEeCCC------EEEEEEEEe
Confidence 567778777653 377788754
No 117
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=92.68 E-value=4.3 Score=42.03 Aligned_cols=160 Identities=9% Similarity=-0.005 Sum_probs=77.4
Q ss_pred CEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcC
Q 008089 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTE 174 (578)
Q Consensus 95 ~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~ 174 (578)
+++++.|+.++ .+.+||+.+.+....-..+. ... -.+++..++++++.|+. ...+.+||+.
T Consensus 210 ~~~l~s~~~d~-----~i~vwd~~~~~~~~~~~~~h--~~~-v~~~~~sd~~~l~s~~~-----------d~~v~vwd~~ 270 (450)
T 2vdu_B 210 HQFIITSDRDE-----HIKISHYPQCFIVDKWLFGH--KHF-VSSICCGKDYLLLSAGG-----------DDKIFAWDWK 270 (450)
T ss_dssp CEEEEEEETTS-----CEEEEEESCTTCEEEECCCC--SSC-EEEEEECSTTEEEEEES-----------SSEEEEEETT
T ss_pred CcEEEEEcCCC-----cEEEEECCCCceeeeeecCC--CCc-eEEEEECCCCEEEEEeC-----------CCeEEEEECC
Confidence 77888887653 58888887665332111111 111 11222225666777772 2467888888
Q ss_pred cceEEEeccCCC-----------C----------CCCCCceeEEEe-CCEEEEEecCCCCCcccCceEEEEC--C-CCce
Q 008089 175 TFVWKRATTSGN-----------P----------PSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDT--D-TLTW 229 (578)
Q Consensus 175 t~~W~~~~~~g~-----------~----------p~~R~~h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~--~-t~~W 229 (578)
+.+....-.... . ........++.. ++.++++++... +.+.+||+ . ...+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-----~~i~iw~~~~~~~~~l 345 (450)
T 2vdu_B 271 TGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT-----KCIIILEMSEKQKGDL 345 (450)
T ss_dssp TCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC-----SEEEEEEECSSSTTCE
T ss_pred CCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC-----CeEEEEEeccCCCCce
Confidence 765432211000 0 001111112222 344444444221 34778887 3 3445
Q ss_pred EEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCC---CccCcEEEEECCCCcEE
Q 008089 230 KELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQ---NLYDDLYMIDVDSGLWT 281 (578)
Q Consensus 230 ~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~---~~~~dv~~ydi~t~~W~ 281 (578)
..+.. ......-.+++...+.+++..+..... ...-.+|.++.+++.|.
T Consensus 346 ~~~~~---~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 346 ALKQI---ITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp EEEEE---EECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred eeccE---eccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence 54443 222222334555667777776653211 11225777788888885
No 118
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=92.67 E-value=4.5 Score=41.51 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=32.5
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 201 NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 201 ~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
+.+++.|+.++ .+.+||+.+..-...-. + ....-.+++.. ++++++.||.+ ..|.+||+.+..
T Consensus 308 g~~l~sgs~D~------~i~iwd~~~~~~~~~~~-~---h~~~v~~v~~~~~g~~l~s~s~D------~~i~vwd~~~~~ 371 (410)
T 1vyh_C 308 GPFLLSGSRDK------TIKMWDVSTGMCLMTLV-G---HDNWVRGVLFHSGGKFILSCADD------KTLRVWDYKNKR 371 (410)
T ss_dssp CCEEEEEETTS------EEEEEETTTTEEEEEEE-C---CSSCEEEEEECSSSSCEEEEETT------TEEEEECCTTSC
T ss_pred CCEEEEEeCCC------eEEEEECCCCceEEEEE-C---CCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCc
Confidence 45666676543 48889987654222111 1 11111122222 45566666643 248889987654
No 119
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=92.57 E-value=8.5 Score=39.31 Aligned_cols=211 Identities=15% Similarity=0.129 Sum_probs=97.2
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcc
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREG 137 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~ 137 (578)
+.++++|..+++...+-. .......-.++.. ++++++.|+.++ .+.++|+.+.+-.... .+ .. ..
T Consensus 125 ~tV~lWd~~tg~~~~~~~---~~~~~~~V~sv~fspdg~~lasgs~Dg-----~v~iWd~~~~~~~~~~-~~--h~--~~ 191 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQ---MEQPGEYISSVAWIKEGNYLAVGTSSA-----EVQLWDVQQQKRLRNM-TS--HS--AR 191 (420)
T ss_dssp TEEEEEETTTCCEEEEEE---CCSTTCCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEE-CC--CS--SC
T ss_pred CEEEEEECCCCCEEEEEE---ecCCCCcEEEEEECCCCCEEEEEECCC-----eEEEEEcCCCcEEEEE-eC--CC--Cc
Confidence 359999999987765431 1111111222332 567778887654 4889999887654321 11 11 12
Q ss_pred cEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccC
Q 008089 138 HSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLS 217 (578)
Q Consensus 138 hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~ 217 (578)
..+...++.+++.|+. ...+..+|............+. ...........++..++.|+.++
T Consensus 192 v~~~s~~~~~l~sgs~-----------d~~i~~~d~~~~~~~~~~~~~h--~~~~~~~~~~~~g~~l~s~~~D~------ 252 (420)
T 4gga_A 192 VGSLSWNSYILSSGSR-----------SGHIHHHDVRVAEHHVATLSGH--SQEVCGLRWAPDGRHLASGGNDN------ 252 (420)
T ss_dssp EEEEEEETTEEEEEET-----------TSEEEEEETTSSSCEEEEEECC--SSCEEEEEECTTSSEEEEEETTS------
T ss_pred eEEEeeCCCEEEEEeC-----------CCceeEeeecccceeeEEeccc--ccceeeeeecCCCCeeeeeeccc------
Confidence 2333445666677763 2345566655433221111000 01111111122556666666543
Q ss_pred ceEEEECCCCc--eEEecCCCCCCCCCceeEEEEe--CCEEEEE-cCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCC
Q 008089 218 DVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAF--GKNLFVF-GGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSA 292 (578)
Q Consensus 218 di~~yD~~t~~--W~~v~~~g~~p~~R~~hs~v~~--~~~iyV~-GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~ 292 (578)
.+.++|..+.. +..+... ......-.+++.. +..+++. ||..+ ..|.+||+.++.-........
T Consensus 253 ~v~i~~~~~~~~~~~~~~~~--~~~~~~V~~~~~~p~~~~~la~~~gs~D-----~~I~iwd~~t~~~~~~~~~~~---- 321 (420)
T 4gga_A 253 LVNVWPSAPGEGGWVPLQTF--TQHQGAVKAVAWCPWQSNVLATGGGTSD-----RHIRIWNVCSGACLSAVDAHS---- 321 (420)
T ss_dssp CEEEEESSCCSSCSCCSEEE--CCCSSCEEEEEECTTCTTEEEEEECTTT-----CEEEEEETTTTEEEEEEECSS----
T ss_pred cceEEeeccccccceeeeee--cccCCceeeeeeCCCcccEEEEEeecCC-----CEEEEEeCCccccceeecccc----
Confidence 36667765432 1111110 0001111112222 3445544 44333 248899999886554433211
Q ss_pred ceeeeEeeeeccCCCEEEEEcccc
Q 008089 293 RFSVAGDCLDPLKGGVLVFIGGCN 316 (578)
Q Consensus 293 r~~~~~~~~~~~~~~~l~v~GG~~ 316 (578)
.....++ ...++.+++.+|+.
T Consensus 322 --~v~~~~~-~~~~~~lv~~sg~~ 342 (420)
T 4gga_A 322 --QVCSILW-SPHYKELISGHGFA 342 (420)
T ss_dssp --CEEEEEE-ETTTTEEEEEECTT
T ss_pred --ceeeeee-cCCCCeEEEEEecC
Confidence 1122222 24566676665653
No 120
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=92.46 E-value=14 Score=40.14 Aligned_cols=203 Identities=18% Similarity=0.179 Sum_probs=104.7
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEEECC--
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTS-- 118 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~yD~~-- 118 (578)
++.+|+... ..+.+.++|..+++-... ++....-|.++.- +..+|+.+ . .+.+.+||+.
T Consensus 166 ~~~~~V~~~------~~~~V~viD~~t~~v~~~-----i~~g~~p~~v~~SpDGr~lyv~~-~-----dg~V~viD~~~~ 228 (567)
T 1qks_A 166 ENLFSVTLR------DAGQIALIDGSTYEIKTV-----LDTGYAVHISRLSASGRYLFVIG-R-----DGKVNMIDLWMK 228 (567)
T ss_dssp GGEEEEEET------TTTEEEEEETTTCCEEEE-----EECSSCEEEEEECTTSCEEEEEE-T-----TSEEEEEETTSS
T ss_pred CceEEEEeC------CCCeEEEEECCCCeEEEE-----EeCCCCccceEECCCCCEEEEEc-C-----CCeEEEEECCCC
Confidence 456666544 235799999998765431 1222233444433 34577754 2 2469999995
Q ss_pred CCeEE-ecccCCCCCCCCcccEEEEE-----C-CEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEe-ccCCC----
Q 008089 119 SHTWI-SPSVRGEGPEAREGHSAALV-----G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRA-TTSGN---- 186 (578)
Q Consensus 119 t~~W~-~l~~~g~~P~~R~~hs~~~~-----~-~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~-~~~g~---- 186 (578)
+.+-. .+.. |. .+ ..+++. + ..+|+..- ..+.+.++|..+.+-.+. ...+.
T Consensus 229 t~~~v~~i~~-G~--~P---~~ia~s~~~~pDGk~l~v~n~-----------~~~~v~ViD~~t~~~~~~i~~~~~~~~~ 291 (567)
T 1qks_A 229 EPTTVAEIKI-GS--EA---RSIETSKMEGWEDKYAIAGAY-----------WPPQYVIMDGETLEPKKIQSTRGMTYDE 291 (567)
T ss_dssp SCCEEEEEEC-CS--EE---EEEEECCSTTCTTTEEEEEEE-----------ETTEEEEEETTTCCEEEEEECCEECTTT
T ss_pred CCcEeEEEec-CC--CC---ceeEEccccCCCCCEEEEEEc-----------cCCeEEEEECCCCcEEEEEecccccccc
Confidence 54332 2221 21 12 233333 3 35666533 235677888777554332 22110
Q ss_pred ---CCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeC-CE-EEEEcCcc
Q 008089 187 ---PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFG-KN-LFVFGGFT 261 (578)
Q Consensus 187 ---~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~-~~-iyV~GG~~ 261 (578)
.|.+|........++..+++-= ...+.+++.|........+.. .+..+.-|...... ++ +|+....
T Consensus 292 ~~~~p~~rva~i~~s~~~~~~vv~~-----~~~g~v~~vd~~~~~~~~v~~---i~~~~~~~d~~~~pdgr~~~va~~~- 362 (567)
T 1qks_A 292 QEYHPEPRVAAILASHYRPEFIVNV-----KETGKILLVDYTDLNNLKTTE---ISAERFLHDGGLDGSHRYFITAANA- 362 (567)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEE-----TTTTEEEEEETTCSSEEEEEE---EECCSSEEEEEECTTSCEEEEEEGG-
T ss_pred ccccCCCceEEEEEcCCCCEEEEEe-----cCCCeEEEEecCCCccceeee---eeccccccCceECCCCCEEEEEeCC-
Confidence 1233433333333333333311 123568888887766555444 34456666655443 33 4443221
Q ss_pred CCCCccCcEEEEECCCCcEEEEEeC-CCCCCCc
Q 008089 262 DSQNLYDDLYMIDVDSGLWTKVITT-GEGPSAR 293 (578)
Q Consensus 262 ~~~~~~~dv~~ydi~t~~W~~l~~~-~~~P~~r 293 (578)
.+.|.++|.++++-...... +..|.+.
T Consensus 363 -----sn~V~ViD~~t~kl~~~i~vgg~~Phpg 390 (567)
T 1qks_A 363 -----RNKLVVIDTKEGKLVAIEDTGGQTPHPG 390 (567)
T ss_dssp -----GTEEEEEETTTTEEEEEEECSSSSBCCT
T ss_pred -----CCeEEEEECCCCcEEEEEeccCcCCCCc
Confidence 45699999999875555455 5556653
No 121
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=92.30 E-value=1.6 Score=45.16 Aligned_cols=197 Identities=11% Similarity=0.028 Sum_probs=93.7
Q ss_pred EEEEEc-CCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEee-ecCCCCCCCcceeEEE--ECCEEEEEcccCCCCCCCc
Q 008089 36 TCNAIK-GGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPV-IKGSPPTPRDSHSCTT--VGENLYVFGGTDGMNPLRD 111 (578)
Q Consensus 36 s~v~v~-~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~-~~g~~P~~R~~hs~~~--~~~kIYv~GG~~~~~~~~~ 111 (578)
+++++. .+..+++.|+.+ ..+.++|..+.....+. ..+. ...=.++.. .++.+++.|+.++ .
T Consensus 123 ~~l~~~P~~~~~lasGs~d------g~i~lWd~~~~~~~~~~~~~gH---~~~V~~l~f~p~~~~~l~s~s~D~-----~ 188 (435)
T 4e54_B 123 TSLAWHPTHPSTVAVGSKG------GDIMLWNFGIKDKPTFIKGIGA---GGSITGLKFNPLNTNQFYASSMEG-----T 188 (435)
T ss_dssp EEEEECSSCTTCEEEEETT------SCEEEECSSCCSCCEEECCCSS---SCCCCEEEECSSCTTEEEEECSSS-----C
T ss_pred EEEEEeCCCCCEEEEEeCC------CEEEEEECCCCCceeEEEccCC---CCCEEEEEEeCCCCCEEEEEeCCC-----E
Confidence 445553 233477778754 35888888766533221 1111 111112222 2456777777664 3
Q ss_pred EEEEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCC
Q 008089 112 LHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSA 190 (578)
Q Consensus 112 v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~ 190 (578)
+.++|+.+........... ......++... ++.+++.|+. ...+.++|+....-..+. .-
T Consensus 189 v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~-----------dg~i~~wd~~~~~~~~~~------~h 249 (435)
T 4e54_B 189 TRLQDFKGNILRVFASSDT--INIWFCSLDVSASSRMVVTGDN-----------VGNVILLNMDGKELWNLR------MH 249 (435)
T ss_dssp EEEEETTSCEEEEEECCSS--CSCCCCCEEEETTTTEEEEECS-----------SSBEEEEESSSCBCCCSB------CC
T ss_pred EEEeeccCCceeEEeccCC--CCccEEEEEECCCCCEEEEEeC-----------CCcEeeeccCcceeEEEe------cc
Confidence 7888988876654332111 11112233333 4567777773 235777887654322111 11
Q ss_pred CCceeEEEe---CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe--CCEEEEEcCccCCCC
Q 008089 191 RDSHTCSSW---KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQN 265 (578)
Q Consensus 191 R~~h~~~~~---~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~--~~~iyV~GG~~~~~~ 265 (578)
...-.++.+ ++.+++.|+.++ .+.+||+.+..-..... ..... ...-.++.+ ++..++.|+.+.
T Consensus 250 ~~~v~~v~~~p~~~~~~~s~s~d~------~v~iwd~~~~~~~~~~~-~~~~h-~~~v~~~~~spdg~~l~s~~~D~--- 318 (435)
T 4e54_B 250 KKKVTHVALNPCCDWFLATASVDQ------TVKIWDLRQVRGKASFL-YSLPH-RHPVNAACFSPDGARLLTTDQKS--- 318 (435)
T ss_dssp SSCEEEEEECTTCSSEEEEEETTS------BCCEEETTTCCSSSCCS-BCCBC-SSCEEECCBCTTSSEEEEEESSS---
T ss_pred cceEEeeeecCCCceEEEEecCcc------eeeEEecccccccceEE-Eeeec-cccccceeECCCCCeeEEEcCCC---
Confidence 111122222 345777777553 36678876543211100 00000 111112222 455667776543
Q ss_pred ccCcEEEEECCCCc
Q 008089 266 LYDDLYMIDVDSGL 279 (578)
Q Consensus 266 ~~~dv~~ydi~t~~ 279 (578)
.|.+||+.+..
T Consensus 319 ---~i~iwd~~~~~ 329 (435)
T 4e54_B 319 ---EIRVYSASQWD 329 (435)
T ss_dssp ---CEEEEESSSSS
T ss_pred ---EEEEEECCCCc
Confidence 48899988754
No 122
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=92.11 E-value=4.5 Score=40.97 Aligned_cols=208 Identities=11% Similarity=0.014 Sum_probs=99.4
Q ss_pred EEEEcC-CCEEEEEcCCCCCCCCcccEEEEEcCCCcEEE-----ee-ecCCCCCCCcceeEEEE-CC-EEEEEcccCCCC
Q 008089 37 CNAIKG-GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQ-----PV-IKGSPPTPRDSHSCTTV-GE-NLYVFGGTDGMN 107 (578)
Q Consensus 37 ~v~v~~-g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~-----l~-~~g~~P~~R~~hs~~~~-~~-kIYv~GG~~~~~ 107 (578)
++.+.. +..+++.|+.+ ..+.+||..+..... +. ..+ ....-.++... ++ .+++.|+.++
T Consensus 86 ~~~~~p~~~~~l~s~s~d------g~v~vw~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~p~~~~~l~s~~~dg-- 154 (402)
T 2aq5_A 86 DIAWCPHNDNVIASGSED------CTVMVWEIPDGGLVLPLREPVITLEG---HTKRVGIVAWHPTAQNVLLSAGCDN-- 154 (402)
T ss_dssp EEEECTTCTTEEEEEETT------SEEEEEECCTTCCSSCBCSCSEEEEC---CSSCEEEEEECSSBTTEEEEEETTS--
T ss_pred EEEeCCCCCCEEEEEeCC------CeEEEEEccCCCCccccCCceEEecC---CCCeEEEEEECcCCCCEEEEEcCCC--
Confidence 444443 33466666643 358888887764321 00 000 01111122222 33 5777777653
Q ss_pred CCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCC
Q 008089 108 PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 186 (578)
Q Consensus 108 ~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~ 186 (578)
.+.+||+.+.+....-. .......-.+++.. ++.+++.|+. ...+.+||+.+..-...-.. .
T Consensus 155 ---~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~-~ 217 (402)
T 2aq5_A 155 ---VILVWDVGTGAAVLTLG--PDVHPDTIYSVDWSRDGALICTSCR-----------DKRVRVIEPRKGTVVAEKDR-P 217 (402)
T ss_dssp ---CEEEEETTTTEEEEEEC--TTTCCSCEEEEEECTTSSCEEEEET-----------TSEEEEEETTTTEEEEEEEC-S
T ss_pred ---EEEEEECCCCCccEEEe--cCCCCCceEEEEECCCCCEEEEEec-----------CCcEEEEeCCCCceeeeecc-C
Confidence 48999999887643210 00011111223332 4566666662 24688899887654332101 1
Q ss_pred CCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCce--EEecCCCCCCCCCceeEEEEe-C-CEEEEEcCccC
Q 008089 187 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTW--KELNTSGMVLSPRAGHSTVAF-G-KNLFVFGGFTD 262 (578)
Q Consensus 187 ~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W--~~v~~~g~~p~~R~~hs~v~~-~-~~iyV~GG~~~ 262 (578)
....+....+...++.+++.|.... .-..+.+||+.+..- .... ......-.+++.. + ..+++.|+.+.
T Consensus 218 ~~~~~~~~~~~~~~~~~l~~g~~~~---~d~~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~g~~dg 290 (402)
T 2aq5_A 218 HEGTRPVHAVFVSEGKILTTGFSRM---SERQVALWDTKHLEEPLSLQE----LDTSSGVLLPFFDPDTNIVYLCGKGDS 290 (402)
T ss_dssp SCSSSCCEEEECSTTEEEEEEECTT---CCEEEEEEETTBCSSCSEEEE----CCCCSSCEEEEEETTTTEEEEEETTCS
T ss_pred CCCCcceEEEEcCCCcEEEEeccCC---CCceEEEEcCccccCCceEEe----ccCCCceeEEEEcCCCCEEEEEEcCCC
Confidence 1111122223334778777773211 124588999876432 1111 1111112222332 3 45556665432
Q ss_pred CCCccCcEEEEECCCCc--EEEEEe
Q 008089 263 SQNLYDDLYMIDVDSGL--WTKVIT 285 (578)
Q Consensus 263 ~~~~~~dv~~ydi~t~~--W~~l~~ 285 (578)
.|.+||+.+.. ...+..
T Consensus 291 ------~i~i~d~~~~~~~~~~l~~ 309 (402)
T 2aq5_A 291 ------SIRYFEITSEAPFLHYLSM 309 (402)
T ss_dssp ------CEEEEEECSSTTCEEEEEE
T ss_pred ------eEEEEEecCCCcceEeecc
Confidence 48899998876 555543
No 123
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=92.07 E-value=8.4 Score=37.61 Aligned_cols=211 Identities=7% Similarity=0.011 Sum_probs=101.3
Q ss_pred EEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCCcEEEEE
Q 008089 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILD 116 (578)
Q Consensus 38 v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~yD 116 (578)
+++..++.||+.+..+ ..+++||+.++++..+... ....-++++.. ++++|+....+. .....+++||
T Consensus 50 ~~~~~~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~~----~~~~~~~i~~~~dg~l~v~~~~~~-~~~~~i~~~d 118 (333)
T 2dg1_A 50 LNFDRQGQLFLLDVFE------GNIFKINPETKEIKRPFVS----HKANPAAIKIHKDGRLFVCYLGDF-KSTGGIFAAT 118 (333)
T ss_dssp EEECTTSCEEEEETTT------CEEEEECTTTCCEEEEEEC----SSSSEEEEEECTTSCEEEEECTTS-SSCCEEEEEC
T ss_pred cEECCCCCEEEEECCC------CEEEEEeCCCCcEEEEeeC----CCCCcceEEECCCCcEEEEeCCCC-CCCceEEEEe
Confidence 3443344588776532 3699999998887764311 11122233332 567887753221 1224799999
Q ss_pred CCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCcee
Q 008089 117 TSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT 195 (578)
Q Consensus 117 ~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~ 195 (578)
+.+.....+-. .......-..++.. ++++|+...... .......++++|+.+.+...+..... ....
T Consensus 119 ~~~~~~~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~ 186 (333)
T 2dg1_A 119 ENGDNLQDIIE--DLSTAYCIDDMVFDSKGGFYFTDFRGY-----STNPLGGVYYVSPDFRTVTPIIQNIS-----VANG 186 (333)
T ss_dssp TTSCSCEEEEC--SSSSCCCEEEEEECTTSCEEEEECCCB-----TTBCCEEEEEECTTSCCEEEEEEEES-----SEEE
T ss_pred CCCCEEEEEEc--cCccCCcccceEECCCCCEEEEecccc-----ccCCCceEEEEeCCCCEEEEeecCCC-----cccc
Confidence 98876542211 11111111222222 467777543110 11123578999988766665431100 1122
Q ss_pred EEEe-CC-EEEEEecCCCCCcccCceEEEECCC--CceEEecCC--CCCCCCCceeEEEEe-CCEEEEEcCccCCCCccC
Q 008089 196 CSSW-KN-KIIVIGGEDGHDYYLSDVHILDTDT--LTWKELNTS--GMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYD 268 (578)
Q Consensus 196 ~~~~-~~-~lyV~GG~~~~~~~~~di~~yD~~t--~~W~~v~~~--g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~ 268 (578)
++.. ++ .||+.... .+.+++||+.+ .....+... ...+....-..++.- ++.+|+.... .+
T Consensus 187 i~~~~dg~~l~v~~~~------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~------~~ 254 (333)
T 2dg1_A 187 IALSTDEKVLWVTETT------ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG------QG 254 (333)
T ss_dssp EEECTTSSEEEEEEGG------GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET------TT
T ss_pred eEECCCCCEEEEEeCC------CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC------CC
Confidence 3322 33 57776432 24588899853 233221100 001100111122222 4567775422 13
Q ss_pred cEEEEECCCCcEEEE
Q 008089 269 DLYMIDVDSGLWTKV 283 (578)
Q Consensus 269 dv~~ydi~t~~W~~l 283 (578)
.|++||++...-..+
T Consensus 255 ~v~~~d~~g~~~~~~ 269 (333)
T 2dg1_A 255 RVLVFNKRGYPIGQI 269 (333)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEEECCCCCEEEEE
Confidence 589999865544444
No 124
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=92.00 E-value=8.5 Score=36.50 Aligned_cols=198 Identities=6% Similarity=-0.061 Sum_probs=102.4
Q ss_pred EEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCCcEEE
Q 008089 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHI 114 (578)
Q Consensus 36 s~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~ 114 (578)
.++++..++.||+.... .+.+.+||+. .+...+.... ....-++++.. ++.+|+.... ...+++
T Consensus 23 ~~i~~d~~g~l~v~~~~------~~~v~~~~~~-~~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----~~~v~~ 87 (300)
T 2qc5_A 23 YGITSSEDGKVWFTQHK------ANKISSLDQS-GRIKEFEVPT---PDAKVMCLIVSSLGDIWFTENG-----ANKIGK 87 (300)
T ss_dssp EEEEECTTSCEEEEETT------TTEEEEECTT-SCEEEEECSS---TTCCEEEEEECTTSCEEEEETT-----TTEEEE
T ss_pred ceeeECCCCCEEEEcCC------CCeEEEECCC-CceEEEECCC---CCCcceeEEECCCCCEEEEecC-----CCeEEE
Confidence 34455444458886431 2468999988 7766543211 11122333332 5678887532 245999
Q ss_pred EECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCc
Q 008089 115 LDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (578)
Q Consensus 115 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~ 193 (578)
||+. .++....... ....-++++.. ++++|+.... ...+++||+. .+........ ....-
T Consensus 88 ~d~~-g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----------~~~i~~~~~~-g~~~~~~~~~---~~~~~ 148 (300)
T 2qc5_A 88 LSKK-GGFTEYPLPQ---PDSGPYGITEGLNGDIWFTQLN-----------GDRIGKLTAD-GTIYEYDLPN---KGSYP 148 (300)
T ss_dssp ECTT-SCEEEEECSS---TTCCEEEEEECSTTCEEEEETT-----------TTEEEEECTT-SCEEEEECSS---TTCCE
T ss_pred ECCC-CCeEEecCCC---CCCCCccceECCCCCEEEEccC-----------CCeEEEECCC-CCEEEccCCC---CCCCc
Confidence 9988 6665443211 11222334433 4678876531 2457888887 5555442110 11122
Q ss_pred eeEEE-eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEE
Q 008089 194 HTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLY 271 (578)
Q Consensus 194 h~~~~-~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~ 271 (578)
+.++. .++++|+.... .+.+++||+ +.++..+.... ....-..++.. ++.||+.... .+.|+
T Consensus 149 ~~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~d~~g~l~v~~~~------~~~i~ 212 (300)
T 2qc5_A 149 AFITLGSDNALWFTENQ------NNSIGRITN-TGKLEEYPLPT---NAAAPVGITSGNDGALWFVEIM------GNKIG 212 (300)
T ss_dssp EEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSSEEEEETT------TTEEE
T ss_pred eeEEECCCCCEEEEecC------CCeEEEECC-CCcEEEeeCCC---CCCCcceEEECCCCCEEEEccC------CCEEE
Confidence 33333 25678876421 235889998 66666554211 11112223332 4567775432 23489
Q ss_pred EEECCCCcEEEEE
Q 008089 272 MIDVDSGLWTKVI 284 (578)
Q Consensus 272 ~ydi~t~~W~~l~ 284 (578)
+||+ ++.+..+.
T Consensus 213 ~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 213 RITT-TGEISEYD 224 (300)
T ss_dssp EECT-TCCEEEEE
T ss_pred EEcC-CCcEEEEE
Confidence 9998 66666653
No 125
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=91.98 E-value=4.8 Score=40.25 Aligned_cols=196 Identities=7% Similarity=-0.016 Sum_probs=98.5
Q ss_pred EEEEEcCCC-EEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcE
Q 008089 36 TCNAIKGGR-FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDL 112 (578)
Q Consensus 36 s~v~v~~g~-~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v 112 (578)
.++.+..++ .+++.|+.+ ..+.+||..+......... ......-.++... ++.+++.|+.+ ..+
T Consensus 77 ~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~d-----~~i 143 (383)
T 3ei3_B 77 TSLEWHPTHPTTVAVGSKG------GDIILWDYDVQNKTSFIQG--MGPGDAITGMKFNQFNTNQLFVSSIR-----GAT 143 (383)
T ss_dssp EEEEECSSCTTEEEEEEBT------SCEEEEETTSTTCEEEECC--CSTTCBEEEEEEETTEEEEEEEEETT-----TEE
T ss_pred EEEEECCCCCCEEEEEcCC------CeEEEEeCCCcccceeeec--CCcCCceeEEEeCCCCCCEEEEEeCC-----CEE
Confidence 344444333 466777653 3589999988776653210 0111111222232 34677777654 358
Q ss_pred EEEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCC
Q 008089 113 HILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSAR 191 (578)
Q Consensus 113 ~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R 191 (578)
.++|+.+.....+.... .....-.+++.. ++.+++.|+. ...+.+||+.......+... ..
T Consensus 144 ~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~h-----~~ 205 (383)
T 3ei3_B 144 TLRDFSGSVIQVFAKTD--SWDYWYCCVDVSVSRQMLATGDS-----------TGRLLLLGLDGHEIFKEKLH-----KA 205 (383)
T ss_dssp EEEETTSCEEEEEECCC--CSSCCEEEEEEETTTTEEEEEET-----------TSEEEEEETTSCEEEEEECS-----SS
T ss_pred EEEECCCCceEEEeccC--CCCCCeEEEEECCCCCEEEEECC-----------CCCEEEEECCCCEEEEeccC-----CC
Confidence 88999887665543211 111112233333 4556666663 24678888865544444311 01
Q ss_pred CceeEEEe-CCE-EEEEecCCCCCcccCceEEEECCC----CceEEecCCCCCCCCCceeEEEEe--CCEEEEEcCccCC
Q 008089 192 DSHTCSSW-KNK-IIVIGGEDGHDYYLSDVHILDTDT----LTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDS 263 (578)
Q Consensus 192 ~~h~~~~~-~~~-lyV~GG~~~~~~~~~di~~yD~~t----~~W~~v~~~g~~p~~R~~hs~v~~--~~~iyV~GG~~~~ 263 (578)
.-.+++.. ++. +++.|+.++ .+.+||+.+ ........ ....-.++... ++.+++.|+.+
T Consensus 206 ~v~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~~l~~~~~d-- 272 (383)
T 3ei3_B 206 KVTHAEFNPRCDWLMATSSVDA------TVKLWDLRNIKDKNSYIAEMP-----HEKPVNAAYFNPTDSTKLLTTDQR-- 272 (383)
T ss_dssp CEEEEEECSSCTTEEEEEETTS------EEEEEEGGGCCSTTCEEEEEE-----CSSCEEEEEECTTTSCEEEEEESS--
T ss_pred cEEEEEECCCCCCEEEEEeCCC------EEEEEeCCCCCcccceEEEec-----CCCceEEEEEcCCCCCEEEEEcCC--
Confidence 11222222 344 777777543 478888875 32222211 11112222222 45677777653
Q ss_pred CCccCcEEEEECCCCc
Q 008089 264 QNLYDDLYMIDVDSGL 279 (578)
Q Consensus 264 ~~~~~dv~~ydi~t~~ 279 (578)
..+.+||+.+..
T Consensus 273 ----~~i~iwd~~~~~ 284 (383)
T 3ei3_B 273 ----NEIRVYSSYDWS 284 (383)
T ss_dssp ----SEEEEEETTBTT
T ss_pred ----CcEEEEECCCCc
Confidence 348899988754
No 126
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.89 E-value=7.2 Score=38.80 Aligned_cols=113 Identities=10% Similarity=0.053 Sum_probs=58.0
Q ss_pred eceEEEEEcCcceEEEeccCCCCCCCCCceeEEEe-CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCc
Q 008089 165 YNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRA 243 (578)
Q Consensus 165 ~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~ 243 (578)
...++++|+.+.+...+... .....+..... ++..+++............|+.+|+.+..+..+.. ......
T Consensus 167 ~~~l~~~d~~~g~~~~~~~~----~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~ 239 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQD----TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE---HAEGES 239 (396)
T ss_dssp CEEEEEEETTTCCEEEEEEE----SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC---CCTTEE
T ss_pred cceEEEEECCCCcEEeeccC----CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec---cCCCcc
Confidence 35789999998887766421 11122222222 34433333222211123579999998887776643 101111
Q ss_pred eeEEEEe-CCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEe
Q 008089 244 GHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 244 ~hs~v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~ 285 (578)
....... +++.+++...... .....|+++|+.++....+..
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~-~~~~~l~~~d~~~g~~~~l~~ 281 (396)
T 3c5m_A 240 CTHEFWIPDGSAMAYVSYFKG-QTDRVIYKANPETLENEEVMV 281 (396)
T ss_dssp EEEEEECTTSSCEEEEEEETT-TCCEEEEEECTTTCCEEEEEE
T ss_pred ccceEECCCCCEEEEEecCCC-CccceEEEEECCCCCeEEeee
Confidence 1122222 4443444433221 111239999999988877764
No 127
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=91.88 E-value=8.3 Score=42.49 Aligned_cols=196 Identities=11% Similarity=0.088 Sum_probs=93.7
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEE-ECCEEEEEcccCCCCCCCcEEEE
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRDLHIL 115 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~kIYv~GG~~~~~~~~~v~~y 115 (578)
++.+..+..+++.|+.+ ..+.++|+.+..-...- .+.. ... .+++. .+++.++.|+.++ .+.++
T Consensus 435 ~v~~s~~g~~l~sgs~D------g~v~vwd~~~~~~~~~~-~~h~--~~v-~~~~~s~~~~~l~s~s~D~-----~i~iw 499 (694)
T 3dm0_A 435 DVVLSSDGQFALSGSWD------GELRLWDLAAGVSTRRF-VGHT--KDV-LSVAFSLDNRQIVSASRDR-----TIKLW 499 (694)
T ss_dssp EEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEE-ECCS--SCE-EEEEECTTSSCEEEEETTS-----CEEEE
T ss_pred EEEECCCCCEEEEEeCC------CcEEEEECCCCcceeEE-eCCC--CCE-EEEEEeCCCCEEEEEeCCC-----EEEEE
Confidence 33443333455666643 35889998876543311 1110 111 12222 2556667777653 47777
Q ss_pred ECCCCeEEecccCCCCCCCCcccEEEEE-CC---EEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCC
Q 008089 116 DTSSHTWISPSVRGEGPEAREGHSAALV-GK---RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSAR 191 (578)
Q Consensus 116 D~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~---~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R 191 (578)
|.....-..+... ....+....++.. .+ .+++.|+. ...+.++|+.+......-. ....
T Consensus 500 d~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~-----------d~~v~vwd~~~~~~~~~~~---~h~~- 562 (694)
T 3dm0_A 500 NTLGECKYTISEG--GEGHRDWVSCVRFSPNTLQPTIVSASW-----------DKTVKVWNLSNCKLRSTLA---GHTG- 562 (694)
T ss_dssp CTTSCEEEEECSS--TTSCSSCEEEEEECSCSSSCEEEEEET-----------TSCEEEEETTTCCEEEEEC---CCSS-
T ss_pred ECCCCcceeeccC--CCCCCCcEEEEEEeCCCCcceEEEEeC-----------CCeEEEEECCCCcEEEEEc---CCCC-
Confidence 7654432222111 1111111222222 21 35566663 2457788887765433211 0011
Q ss_pred CceeEEE-eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcE
Q 008089 192 DSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDL 270 (578)
Q Consensus 192 ~~h~~~~-~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv 270 (578)
.-.+++. .++++++.||.++ .+.+||+.+.+-. .. ......-++++...+..++.++.. +.|
T Consensus 563 ~v~~v~~spdg~~l~sg~~Dg------~i~iwd~~~~~~~--~~---~~~~~~v~~~~~sp~~~~l~~~~~------~~i 625 (694)
T 3dm0_A 563 YVSTVAVSPDGSLCASGGKDG------VVLLWDLAEGKKL--YS---LEANSVIHALCFSPNRYWLCAATE------HGI 625 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTS------BCEEEETTTTEEE--EC---CBCSSCEEEEEECSSSSEEEEEET------TEE
T ss_pred CEEEEEEeCCCCEEEEEeCCC------eEEEEECCCCceE--EE---ecCCCcEEEEEEcCCCcEEEEEcC------CCE
Confidence 1112222 2677888887653 3788998776532 22 112222344444445545555432 248
Q ss_pred EEEECCCCcEE
Q 008089 271 YMIDVDSGLWT 281 (578)
Q Consensus 271 ~~ydi~t~~W~ 281 (578)
.+||+.+..-.
T Consensus 626 ~iwd~~~~~~~ 636 (694)
T 3dm0_A 626 KIWDLESKSIV 636 (694)
T ss_dssp EEEETTTTEEE
T ss_pred EEEECCCCCCh
Confidence 99999887543
No 128
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=91.76 E-value=1.4 Score=52.24 Aligned_cols=194 Identities=12% Similarity=0.074 Sum_probs=96.5
Q ss_pred EEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEE
Q 008089 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHIL 115 (578)
Q Consensus 36 s~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~y 115 (578)
.++++..+...+++|+.+ ..+++||..+....... .+ ........+..-+++.++.||.++ .+.+|
T Consensus 965 ~~~~~sp~g~~l~~g~~~------g~i~i~d~~~~~~~~~~-~~--h~~~v~~l~~s~dg~~l~s~~~dg-----~i~vw 1030 (1249)
T 3sfz_A 965 SCCCLSPHLEYVAFGDED------GAIKIIELPNNRVFSSG-VG--HKKAVRHIQFTADGKTLISSSEDS-----VIQVW 1030 (1249)
T ss_dssp EEEEECTTSSEEEEEETT------SCCEEEETTTTSCEEEC-CC--CSSCCCCEEECSSSSCEEEECSSS-----BEEEE
T ss_pred EEEEEcCCCCEEEEEcCC------CCEEEEEcCCCceeeec-cc--CCCceEEEEECCCCCEEEEEcCCC-----EEEEE
Confidence 344444444466666643 35788998876544321 11 111122222223566777777553 58999
Q ss_pred ECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCcee
Q 008089 116 DTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT 195 (578)
Q Consensus 116 D~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~ 195 (578)
|..+........ ....-.+++...+..++.|+. ...+.+||+.+.+-...-. .........
T Consensus 1031 d~~~~~~~~~~~-----~~~~v~~~~~~~~~~l~~~~~-----------dg~v~vwd~~~~~~~~~~~---~~~~~v~~~ 1091 (1249)
T 3sfz_A 1031 NWQTGDYVFLQA-----HQETVKDFRLLQDSRLLSWSF-----------DGTVKVWNVITGRIERDFT---CHQGTVLSC 1091 (1249)
T ss_dssp ETTTTEEECCBC-----CSSCEEEEEECSSSEEEEEES-----------SSEEEEEETTTTCCCEEEE---CCSSCCCCE
T ss_pred ECCCCceEEEec-----CCCcEEEEEEcCCCcEEEEEC-----------CCcEEEEECCCCceeEEEc---ccCCcEEEE
Confidence 999888764321 111122333334444555552 2457788887654322111 011111222
Q ss_pred EEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEE--EeCCEEEEEcCccCCCCccCcEEEE
Q 008089 196 CSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV--AFGKNLFVFGGFTDSQNLYDDLYMI 273 (578)
Q Consensus 196 ~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v--~~~~~iyV~GG~~~~~~~~~dv~~y 273 (578)
+...++.+++.|+.++. +.+||..+..- +.. .......-.++ .-++++++.|+.++ .|.+|
T Consensus 1092 ~~s~d~~~l~s~s~d~~------v~iwd~~~~~~--~~~---l~~h~~~v~~~~~s~dg~~lat~~~dg------~i~vw 1154 (1249)
T 3sfz_A 1092 AISSDATKFSSTSADKT------AKIWSFDLLSP--LHE---LKGHNGCVRCSAFSLDGILLATGDDNG------EIRIW 1154 (1249)
T ss_dssp EECSSSSSCEEECCSSC------CCEECSSSSSC--SBC---CCCCSSCEEEEEECSSSSEEEEEETTS------CCCEE
T ss_pred EECCCCCEEEEEcCCCc------EEEEECCCcce--eee---eccCCCcEEEEEECCCCCEEEEEeCCC------EEEEE
Confidence 23336677777776533 66778765431 111 11111111222 23566777777543 37888
Q ss_pred ECCCCc
Q 008089 274 DVDSGL 279 (578)
Q Consensus 274 di~t~~ 279 (578)
|+.+..
T Consensus 1155 d~~~~~ 1160 (1249)
T 3sfz_A 1155 NVSDGQ 1160 (1249)
T ss_dssp ESSSSC
T ss_pred ECCCCc
Confidence 988764
No 129
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=91.76 E-value=12 Score=37.80 Aligned_cols=155 Identities=14% Similarity=0.157 Sum_probs=74.4
Q ss_pred EEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCCcEEE
Q 008089 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHI 114 (578)
Q Consensus 36 s~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~ 114 (578)
.++.+..++.+++.|+.+ ..+.++|..+.+-...- .+. ...-.++... ++..++.|+.+ ..+.+
T Consensus 127 ~~v~~s~dg~~l~s~~~d------~~i~iwd~~~~~~~~~~-~~h---~~~v~~~~~~p~~~~l~s~s~d-----~~v~i 191 (393)
T 1erj_A 127 RSVCFSPDGKFLATGAED------RLIRIWDIENRKIVMIL-QGH---EQDIYSLDYFPSGDKLVSGSGD-----RTVRI 191 (393)
T ss_dssp EEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEE-CCC---SSCEEEEEECTTSSEEEEEETT-----SEEEE
T ss_pred EEEEECCCCCEEEEEcCC------CeEEEEECCCCcEEEEE-ccC---CCCEEEEEEcCCCCEEEEecCC-----CcEEE
Confidence 345554444466667643 35889999887654321 111 1111122222 45566667654 35888
Q ss_pred EECCCCeEEecccCCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEe-ccCCCCCCC-
Q 008089 115 LDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRA-TTSGNPPSA- 190 (578)
Q Consensus 115 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~-~~~g~~p~~- 190 (578)
+|+.+.+....-. .. ..-.+++.. ++++++.|+.. ..+.+||+.+...... .........
T Consensus 192 wd~~~~~~~~~~~---~~--~~v~~~~~~~~~~~~l~~~s~d-----------~~v~iwd~~~~~~~~~~~~~~~~~~~h 255 (393)
T 1erj_A 192 WDLRTGQCSLTLS---IE--DGVTTVAVSPGDGKYIAAGSLD-----------RAVRVWDSETGFLVERLDSENESGTGH 255 (393)
T ss_dssp EETTTTEEEEEEE---CS--SCEEEEEECSTTCCEEEEEETT-----------SCEEEEETTTCCEEEEEC------CCC
T ss_pred EECCCCeeEEEEE---cC--CCcEEEEEECCCCCEEEEEcCC-----------CcEEEEECCCCcEEEeecccccCCCCC
Confidence 8998877543211 01 111222222 45677777732 3477888877653322 110000011
Q ss_pred CCceeEEEe--CCEEEEEecCCCCCcccCceEEEECCCC
Q 008089 191 RDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTL 227 (578)
Q Consensus 191 R~~h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t~ 227 (578)
...-.++.+ ++.+++.|+.++ .+.+||+.+.
T Consensus 256 ~~~v~~v~~~~~g~~l~s~s~d~------~v~~wd~~~~ 288 (393)
T 1erj_A 256 KDSVYSVVFTRDGQSVVSGSLDR------SVKLWNLQNA 288 (393)
T ss_dssp SSCEEEEEECTTSSEEEEEETTS------EEEEEEC---
T ss_pred CCCEEEEEECCCCCEEEEEeCCC------EEEEEECCCC
Confidence 111122222 566777777553 3777887653
No 130
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=91.66 E-value=7.5 Score=37.90 Aligned_cols=90 Identities=12% Similarity=0.004 Sum_probs=47.4
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEE---ECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCc
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT---VGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEARE 136 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~---~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~ 136 (578)
..+.+||..+.....+.. .. ..-.++.. -++++++.|+.++ .+.+||+.+.+-... ......
T Consensus 108 g~v~iwd~~~~~~~~~~~---~~--~~v~~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~-----~~~~~~ 172 (368)
T 3mmy_A 108 KTAKMWDLSSNQAIQIAQ---HD--APVKTIHWIKAPNYSCVMTGSWDK-----TLKFWDTRSSNPMMV-----LQLPER 172 (368)
T ss_dssp SEEEEEETTTTEEEEEEE---CS--SCEEEEEEEECSSCEEEEEEETTS-----EEEEECSSCSSCSEE-----EECSSC
T ss_pred CcEEEEEcCCCCceeecc---cc--CceEEEEEEeCCCCCEEEEccCCC-----cEEEEECCCCcEEEE-----EecCCC
Confidence 358899998887655321 11 11122222 2567778877653 488888876542111 011112
Q ss_pred ccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcc
Q 008089 137 GHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF 176 (578)
Q Consensus 137 ~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~ 176 (578)
..+.....+.+++.++ ...+.+|+....
T Consensus 173 ~~~~~~~~~~~~~~~~------------~~~i~~~~~~~~ 200 (368)
T 3mmy_A 173 CYCADVIYPMAVVATA------------ERGLIVYQLENQ 200 (368)
T ss_dssp EEEEEEETTEEEEEEG------------GGCEEEEECSSS
T ss_pred ceEEEecCCeeEEEeC------------CCcEEEEEeccc
Confidence 3334444555555444 245677777654
No 131
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=91.66 E-value=12 Score=37.34 Aligned_cols=226 Identities=10% Similarity=0.104 Sum_probs=111.8
Q ss_pred eEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEE
Q 008089 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHI 114 (578)
Q Consensus 35 hs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~ 114 (578)
-.++...+.+.+|++|-. ..+++-.-.-.+|..+......+ .....++...++.+|+.|- . ..+++
T Consensus 38 ~~~v~~~~~~~~~~~G~~-------g~i~~s~DgG~tW~~~~~~~~~~-~~~~~~i~~~~~~~~~~g~-~-----g~i~~ 103 (327)
T 2xbg_A 38 ILDMSFIDRHHGWLVGVN-------ATLMETRDGGQTWEPRTLVLDHS-DYRFNSVSFQGNEGWIVGE-P-----PIMLH 103 (327)
T ss_dssp EEEEEESSSSCEEEEETT-------TEEEEESSTTSSCEECCCCCSCC-CCEEEEEEEETTEEEEEEE-T-----TEEEE
T ss_pred EEEEEECCCCcEEEEcCC-------CeEEEeCCCCCCCeECCCCCCCC-CccEEEEEecCCeEEEEEC-C-----CeEEE
Confidence 344555555567886531 22444433346899864211111 1123344445678888752 1 13444
Q ss_pred EECCCCeEEecccCCCCCCCCcccEEE-EECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCc
Q 008089 115 LDTSSHTWISPSVRGEGPEAREGHSAA-LVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (578)
Q Consensus 115 yD~~t~~W~~l~~~g~~P~~R~~hs~~-~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~ 193 (578)
-+-.-.+|+.+......|.. ...++ .-++.+|+.|.. ..+++-.-.-.+|+.+.. +.....
T Consensus 104 S~DgG~tW~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~------------g~v~~S~DgG~tW~~~~~----~~~~~~ 165 (327)
T 2xbg_A 104 TTDGGQSWSQIPLDPKLPGS--PRLIKALGNGSAEMITNV------------GAIYRTKDSGKNWQALVQ----EAIGVM 165 (327)
T ss_dssp ESSTTSSCEECCCCTTCSSC--EEEEEEEETTEEEEEETT------------CCEEEESSTTSSEEEEEC----SCCCCE
T ss_pred ECCCCCCceECccccCCCCC--eEEEEEECCCCEEEEeCC------------ccEEEEcCCCCCCEEeec----CCCcce
Confidence 32234689886532222221 22333 346788887651 134554445678999863 222233
Q ss_pred eeEEEe-CCEEEEEecCCCCCcccCceEEEE-CCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcE
Q 008089 194 HTCSSW-KNKIIVIGGEDGHDYYLSDVHILD-TDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDL 270 (578)
Q Consensus 194 h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD-~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv 270 (578)
+.++.. ++.+|++|- . ..++.-+ .....|+.+.. +.+...+.++.. ++.+|+.+.. ..+
T Consensus 166 ~~~~~~~~~~~~~~g~-~------G~~~~S~d~gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~~~~-------G~~ 227 (327)
T 2xbg_A 166 RNLNRSPSGEYVAVSS-R------GSFYSTWEPGQTAWEPHNR----TTSRRLHNMGFTPDGRLWMIVNG-------GKI 227 (327)
T ss_dssp EEEEECTTSCEEEEET-T------SSEEEEECTTCSSCEEEEC----CSSSCEEEEEECTTSCEEEEETT-------TEE
T ss_pred EEEEEcCCCcEEEEEC-C------CcEEEEeCCCCCceeECCC----CCCCccceeEECCCCCEEEEeCC-------ceE
Confidence 444433 566666652 2 1244443 23678999853 333444444443 4677777642 124
Q ss_pred EEEECC-CCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEcc
Q 008089 271 YMIDVD-SGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGG 314 (578)
Q Consensus 271 ~~ydi~-t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG 314 (578)
++.+.. ..+|+.+... ..+.. ........ ..++.+|+.|+
T Consensus 228 ~~s~~D~G~tW~~~~~~-~~~~~-~~~~~v~~--~~~~~~~~~g~ 268 (327)
T 2xbg_A 228 AFSDPDNSENWGELLSP-LRRNS-VGFLDLAY--RTPNEVWLAGG 268 (327)
T ss_dssp EEEETTEEEEECCCBCT-TSSCC-SCEEEEEE--SSSSCEEEEES
T ss_pred EEecCCCCCeeEeccCC-cccCC-cceEEEEe--cCCCEEEEEeC
Confidence 554333 5679876431 11111 12222222 23567787765
No 132
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=91.47 E-value=9.7 Score=36.35 Aligned_cols=86 Identities=13% Similarity=0.050 Sum_probs=42.2
Q ss_pred ceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeee
Q 008089 218 DVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVA 297 (578)
Q Consensus 218 di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~ 297 (578)
.+.++|.....-..... .............++.+++.+|..+ ..|.+||+.+..-...-. + ......
T Consensus 222 ~i~lwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~sg~~d-----~~i~iwd~~~~~~~~~l~-g----H~~~V~ 288 (318)
T 4ggc_A 222 HIRIWNVCSGACLSAVD---AHSQVCSILWSPHYKELISGHGFAQ-----NQLVIWKYPTMAKVAELK-G----HTSRVL 288 (318)
T ss_dssp EEEEEETTTCCEEEEEE---CSSCEEEEEEETTTTEEEEEECTTT-----CCEEEEETTTCCEEEEEC-C----CSSCEE
T ss_pred EEEEEeccccccccccc---ceeeeeeeeecccccceEEEEEcCC-----CEEEEEECCCCcEEEEEc-C----CCCCEE
Confidence 47778887665444432 1111111112222455666656533 348999998875332211 1 111222
Q ss_pred EeeeeccCCCEEEEEccccCC
Q 008089 298 GDCLDPLKGGVLVFIGGCNKS 318 (578)
Q Consensus 298 ~~~~~~~~~~~l~v~GG~~~~ 318 (578)
+..+ ..++.+++.||.+..
T Consensus 289 ~l~~--spdg~~l~S~s~D~~ 307 (318)
T 4ggc_A 289 SLTM--SPDGATVASAAADET 307 (318)
T ss_dssp EEEE--CTTSSCEEEEETTTE
T ss_pred EEEE--cCCCCEEEEEecCCe
Confidence 2233 346667777876543
No 133
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=91.40 E-value=8.3 Score=41.98 Aligned_cols=217 Identities=9% Similarity=-0.039 Sum_probs=111.9
Q ss_pred EEcCCCEEEEEcCCCC----CCCCcccEEEEEcCC------CcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCC-
Q 008089 39 AIKGGRFLYVFGGYGK----DNCQTNQVHVFDTVN------QTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMN- 107 (578)
Q Consensus 39 ~v~~g~~Iyv~GG~~~----~~~~~~~v~~yD~~t------~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~- 107 (578)
...+++.|+... .+. .......++++|+.+ .....+.. .. + .....-...-+++..++...+...
T Consensus 137 ~spDg~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~-~~-~-~~~~~~~~SpDG~~la~~~~~~~~~ 212 (662)
T 3azo_A 137 LLPERGEVWCMA-EEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD-DA-H-RFVTGPRLSPDGRQAVWLAWDHPRM 212 (662)
T ss_dssp EETTTTEEEEEE-EEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC-SC-S-SEECCCEECTTSSEEEEEEECTTCC
T ss_pred ECCCCCEEEEEE-ecccCCCCCCceeEEEEEECCCCccccCCceeEEEe-cC-C-CcccCceECCCCCEEEEEECCCCCC
Confidence 345666565443 221 011335799999988 66555420 10 0 111111222255544444433211
Q ss_pred --CCCcEEEEECC-CC---eEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEE
Q 008089 108 --PLRDLHILDTS-SH---TWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR 180 (578)
Q Consensus 108 --~~~~v~~yD~~-t~---~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~ 180 (578)
...++|++|+. +. ....+... . .......+.. ++++|+.+... . ...+|++|+.+..++.
T Consensus 213 ~~~~~~i~~~d~~~~g~~~~~~~l~~~---~-~~~~~~~~~spdg~l~~~~~~~------~---~~~l~~~~~~~~~~~~ 279 (662)
T 3azo_A 213 PWEGTELKTARVTEDGRFADTRTLLGG---P-EEAIAQAEWAPDGSLIVATDRT------G---WWNLHRVDPATGAATQ 279 (662)
T ss_dssp TTTCEEEEEEEECTTSCEEEEEEEEEE---T-TBCEEEEEECTTSCEEEEECTT------S---SCEEEEECTTTCCEEE
T ss_pred CCCCcEEEEEEECCCCcccccEEeCCC---C-CceEcceEECCCCeEEEEECCC------C---CeEEEEEECCCCceee
Confidence 12579999998 56 44443211 0 1111222322 56677665521 1 2368999998888887
Q ss_pred eccCCC---CCCCCC-ceeEEEe-CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEE-EEeCCEE
Q 008089 181 ATTSGN---PPSARD-SHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHST-VAFGKNL 254 (578)
Q Consensus 181 ~~~~g~---~p~~R~-~h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~-v~~~~~i 254 (578)
+..... .|.... ...++.. ++++++.+.. + ...+|.+|+.+...+.+.. +. .....+ ..-++.+
T Consensus 280 l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~----~~~l~~~d~~~~~~~~l~~----~~-~~~~~~~s~~~~~~ 349 (662)
T 3azo_A 280 LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G----AAVLGILDPESGELVDAAG----PW-TEWAATLTVSGTRA 349 (662)
T ss_dssp SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S----SCEEEEEETTTTEEEECCS----SC-CEEEEEEEEETTEE
T ss_pred cccccccccCccccccCceEeEeCCCEEEEEEEc-C----ccEEEEEECCCCcEEEecC----CC-CeEEEEEecCCCEE
Confidence 753211 011110 1123333 6777776654 2 2468888998887776643 11 112223 3446666
Q ss_pred EEEcCccCCCCccCcEEEEECCCCcEEEEEe
Q 008089 255 FVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 255 yV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~ 285 (578)
++..+... ....+|.+|+.++..+.+..
T Consensus 350 ~~~~~~~~---~~~~i~~~d~~~g~~~~l~~ 377 (662)
T 3azo_A 350 VGVAASPR---TAYEVVELDTVTGRARTIGA 377 (662)
T ss_dssp EEEEEETT---EEEEEEEEETTTCCEEEEES
T ss_pred EEEEcCCC---CCCEEEEEECCCCceEEeec
Confidence 66554322 24569999999998888754
No 134
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=91.38 E-value=7.5 Score=43.07 Aligned_cols=195 Identities=12% Similarity=0.068 Sum_probs=99.2
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCC--------CCCCcEEEEECCCCeEE--ecccCC
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGM--------NPLRDLHILDTSSHTWI--SPSVRG 129 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~--------~~~~~v~~yD~~t~~W~--~l~~~g 129 (578)
..++++|+.+++.... ..++.......+-.-+++.++++..+.. .....++++++.+..-. .+. .
T Consensus 147 ~~i~v~dl~tg~~~~~---~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~-~- 221 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSKV---DVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH-E- 221 (695)
T ss_dssp CEEEEEETTTCCBCSS---CCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE-C-
T ss_pred EEEEEEECCCCCCcCC---cccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE-e-
Confidence 4699999998876411 1112112121222236666666655432 23456999998876521 111 1
Q ss_pred CCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEec
Q 008089 130 EGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGG 208 (578)
Q Consensus 130 ~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG 208 (578)
....+....+.... +++.++++.... ...+.+|++|..+..|..+... .... ...+..++.+|+...
T Consensus 222 ~~~~~~~~~~~~~SpDG~~l~~~~~~~-------~~~~~l~~~~~~~~~~~~l~~~----~~~~-~~~~~~~g~l~~~s~ 289 (695)
T 2bkl_A 222 RTGDPTTFLQSDLSRDGKYLFVYILRG-------WSENDVYWKRPGEKDFRLLVKG----VGAK-YEVHAWKDRFYVLTD 289 (695)
T ss_dssp CCCCTTCEEEEEECTTSCCEEEEEEET-------TTEEEEEEECTTCSSCEEEEEC----SSCC-EEEEEETTEEEEEEC
T ss_pred cCCCCEEEEEEEECCCCCEEEEEEeCC-------CCceEEEEEcCCCCceEEeecC----CCce-EEEEecCCcEEEEEC
Confidence 11111222222222 344444443211 0246788888877788877532 1111 222224566665543
Q ss_pred CCCCCcccCceEEEECCCCc---eEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEE
Q 008089 209 EDGHDYYLSDVHILDTDTLT---WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (578)
Q Consensus 209 ~~~~~~~~~di~~yD~~t~~---W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~ 281 (578)
.+. ....|+.+|+.+.. |+.+.... ....-..+...++.+++....+. ...||++++....-.
T Consensus 290 ~~~---~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~g~~~~ 355 (695)
T 2bkl_A 290 EGA---PRQRVFEVDPAKPARASWKEIVPED---SSASLLSVSIVGGHLSLEYLKDA----TSEVRVATLKGKPVR 355 (695)
T ss_dssp TTC---TTCEEEEEBTTBCSGGGCEEEECCC---SSCEEEEEEEETTEEEEEEEETT----EEEEEEEETTCCEEE
T ss_pred CCC---CCCEEEEEeCCCCCccCCeEEecCC---CCCeEEEEEEECCEEEEEEEECC----EEEEEEEeCCCCeeE
Confidence 321 23569999987654 88875411 12222233444888877765432 345889997655333
No 135
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=91.36 E-value=2.6 Score=42.47 Aligned_cols=188 Identities=13% Similarity=0.121 Sum_probs=89.2
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE---CCEEEEEcccCCCCCCCcEE
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV---GENLYVFGGTDGMNPLRDLH 113 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~---~~kIYv~GG~~~~~~~~~v~ 113 (578)
++.+..++..++.|+.+ ..+.++|+.+++-...- .+. ...-.++.+ +..+++.|+.++ .+.
T Consensus 132 ~v~~spdg~~l~sgs~d------~~i~iwd~~~~~~~~~~-~~h----~~~V~~~~~~~~~~~~l~s~s~D~-----~v~ 195 (344)
T 4gqb_B 132 TVSVLSSGTQAVSGSKD------ICIKVWDLAQQVVLSSY-RAH----AAQVTCVAASPHKDSVFLSCSEDN-----RIL 195 (344)
T ss_dssp EEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEE-CCC----SSCEEEEEECSSCTTEEEEEETTS-----CEE
T ss_pred EEEECCCCCEEEEEeCC------CeEEEEECCCCcEEEEE-cCc----CCceEEEEecCCCCCceeeecccc-----ccc
Confidence 34443333355666643 34888998877644311 111 111112222 335777887654 488
Q ss_pred EEECCCCeEEe-cccCCCCCCCCccc-EEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEE-EeccCCCCC
Q 008089 114 ILDTSSHTWIS-PSVRGEGPEAREGH-SAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-RATTSGNPP 188 (578)
Q Consensus 114 ~yD~~t~~W~~-l~~~g~~P~~R~~h-s~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~-~~~~~g~~p 188 (578)
+||+.+.+-.. +.. ....... +++.. ++++++.|+. ...+.+||+.+.+-. .+..
T Consensus 196 iwd~~~~~~~~~~~~----~~~~~~~~~~~~~p~~~~~l~sg~~-----------dg~v~~wd~~~~~~~~~~~~----- 255 (344)
T 4gqb_B 196 LWDTRCPKPASQIGC----SAPGYLPTSLAWHPQQSEVFVFGDE-----------NGTVSLVDTKSTSCVLSSAV----- 255 (344)
T ss_dssp EEETTSSSCEEECC--------CCCEEEEEECSSCTTEEEEEET-----------TSEEEEEESCC--CCEEEEC-----
T ss_pred cccccccceeeeeec----ceeeccceeeeecCCCCcceEEecc-----------CCcEEEEECCCCcEEEEEcC-----
Confidence 88988765432 111 1111111 22222 3567777773 235778888754321 1110
Q ss_pred CCCCceeEEEe--CC-EEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe--CCEEEEEcCccCC
Q 008089 189 SARDSHTCSSW--KN-KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDS 263 (578)
Q Consensus 189 ~~R~~h~~~~~--~~-~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~--~~~iyV~GG~~~~ 263 (578)
....-.++.+ ++ ++++.|+.++ .|.+||..+.+-..+. + ....-.+++.. +..+++-||.+.
T Consensus 256 -h~~~v~~v~fsp~g~~~lasgs~D~------~i~vwd~~~~~~~~~~--~---H~~~V~~v~~sp~~~~llas~s~D~- 322 (344)
T 4gqb_B 256 -HSQCVTGLVFSPHSVPFLASLSEDC------SLAVLDSSLSELFRSQ--A---HRDFVRDATWSPLNHSLLTTVGWDH- 322 (344)
T ss_dssp -CSSCEEEEEECSSSSCCEEEEETTS------CEEEECTTCCEEEEEC--C---CSSCEEEEEECSSSTTEEEEEETTS-
T ss_pred -CCCCEEEEEEccCCCeEEEEEeCCC------eEEEEECCCCcEEEEc--C---CCCCEEEEEEeCCCCeEEEEEcCCC-
Confidence 0111122222 33 5667777553 3788898876543322 1 11111222322 345777777643
Q ss_pred CCccCcEEEEECCCC
Q 008089 264 QNLYDDLYMIDVDSG 278 (578)
Q Consensus 264 ~~~~~dv~~ydi~t~ 278 (578)
.|.+|++.+.
T Consensus 323 -----~v~~w~v~~~ 332 (344)
T 4gqb_B 323 -----QVVHHVVPTE 332 (344)
T ss_dssp -----CEEEEECCC-
T ss_pred -----eEEEEECCCC
Confidence 3777777653
No 136
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=91.25 E-value=8.3 Score=37.58 Aligned_cols=139 Identities=13% Similarity=0.092 Sum_probs=68.4
Q ss_pred cEEEEEcCCCcE-EEeeecCCCCC-CCcceeEEEEC----CEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCC
Q 008089 61 QVHVFDTVNQTW-SQPVIKGSPPT-PRDSHSCTTVG----ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEA 134 (578)
Q Consensus 61 ~v~~yD~~t~~W-~~l~~~g~~P~-~R~~hs~~~~~----~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~ 134 (578)
.+.+||..+... ..+........ ......+...+ +.+++.|+.++ .+.+||+.+.+-...- .+ ..
T Consensus 45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~-~~---~~ 115 (366)
T 3k26_A 45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG-----IIRIINPITMQCIKHY-VG---HG 115 (366)
T ss_dssp EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC-----EEEEECTTTCCEEEEE-ES---CC
T ss_pred EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC-----EEEEEEchhceEeeee-cC---CC
Confidence 488888886543 23221111111 11222222224 56788887653 5888898876543211 01 11
Q ss_pred CcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEe--CCEEEEEecCC
Q 008089 135 REGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGED 210 (578)
Q Consensus 135 R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~--~~~lyV~GG~~ 210 (578)
..-.+++.. ++.+++.|+. ...+.+||+.+.+....-. ..........++.+ ++..++.|+.+
T Consensus 116 ~~i~~~~~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d 182 (366)
T 3k26_A 116 NAINELKFHPRDPNLLLSVSK-----------DHALRLWNIQTDTLVAIFG--GVEGHRDEVLSADYDLLGEKIMSCGMD 182 (366)
T ss_dssp SCEEEEEECSSCTTEEEEEET-----------TSCEEEEETTTTEEEEEEC--STTSCSSCEEEEEECTTSSEEEEEETT
T ss_pred CcEEEEEECCCCCCEEEEEeC-----------CCeEEEEEeecCeEEEEec--ccccccCceeEEEECCCCCEEEEecCC
Confidence 111222332 4567777773 2457888988766543321 00111111222222 56677777754
Q ss_pred CCCcccCceEEEECCCC
Q 008089 211 GHDYYLSDVHILDTDTL 227 (578)
Q Consensus 211 ~~~~~~~di~~yD~~t~ 227 (578)
+ .+.+||+.+.
T Consensus 183 g------~i~i~d~~~~ 193 (366)
T 3k26_A 183 H------SLKLWRINSK 193 (366)
T ss_dssp S------CEEEEESCSH
T ss_pred C------CEEEEECCCC
Confidence 3 4788888764
No 137
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=91.16 E-value=13 Score=40.70 Aligned_cols=128 Identities=16% Similarity=0.129 Sum_probs=68.2
Q ss_pred eeEEEECCEEEEEcccCCCCCCCcEEEEEC-CCC--eEEecccCCC--CCCCC---cccEEEE--ECCE----EEEEccC
Q 008089 88 HSCTTVGENLYVFGGTDGMNPLRDLHILDT-SSH--TWISPSVRGE--GPEAR---EGHSAAL--VGKR----LFIFGGC 153 (578)
Q Consensus 88 hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~-~t~--~W~~l~~~g~--~P~~R---~~hs~~~--~~~~----lyvfGG~ 153 (578)
.+-++.+++||+.+.. .+.+++||. .+. .|+.-..... .+..+ ...+.++ .+++ ||+...
T Consensus 56 ~tP~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~- 129 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL- 129 (599)
T ss_dssp SCCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-
T ss_pred eccEEECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-
Confidence 3445679999998753 246999999 765 4876321100 00011 1123344 4565 777533
Q ss_pred CCCCCCCCceeeceEEEEEcCcc--eEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCc--e
Q 008089 154 GKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--W 229 (578)
Q Consensus 154 ~~~~~~~~~~~~ndv~~yd~~t~--~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~--W 229 (578)
...++.+|..+. .|+.-... .........+-++.++.+|+-.+.. .......|+.||.++.+ |
T Consensus 130 -----------dg~l~AlDa~TG~~~W~~~~~~-~~~~~~~~ssP~v~~g~V~vg~~g~-e~g~~g~v~A~D~~TG~~~W 196 (599)
T 1w6s_A 130 -----------DGNVAALNAETGETVWKVENSD-IKVGSTLTIAPYVVKDKVIIGSSGA-ELGVRGYLTAYDVKTGEQVW 196 (599)
T ss_dssp -----------TSEEEEEETTTCCEEEEEECCC-GGGTCBCCSCCEEETTEEEECCBCG-GGTCCCEEEEEETTTCCEEE
T ss_pred -----------CCEEEEEECCCCCEEEeecCCC-CCccceeecCCEEECCEEEEEeccc-ccCCCCeEEEEECCCCcEEE
Confidence 245889998765 48754211 0000011122345688877643211 11123569999998654 8
Q ss_pred EEecC
Q 008089 230 KELNT 234 (578)
Q Consensus 230 ~~v~~ 234 (578)
+.-..
T Consensus 197 ~~~~~ 201 (599)
T 1w6s_A 197 RAYAT 201 (599)
T ss_dssp EEESS
T ss_pred EEcCC
Confidence 76543
No 138
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=91.07 E-value=5.4 Score=42.41 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=39.5
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCC
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH 120 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~ 120 (578)
++.+|+|-| +.+|+||..+++...-. -+.+| . --++....+++|+|-| +..|+||..+.
T Consensus 158 ~~~~yfFkG--------~~yw~yd~~~~~~~~~~-w~gi~--~-iDAA~~~~g~~YfFkG-------~~y~rfd~~~~ 216 (460)
T 1qhu_A 158 DEGILFFQG--------NRKWFWDLTTGTKKERS-WPAVG--N-CTSALRWLGRYYCFQG-------NQFLRFNPVSG 216 (460)
T ss_dssp SSEEEEEET--------TEEEEEETTTTEEEEEC-CTTSC--C-CSEEEEETTEEEEEET-------TEEEEECTTTC
T ss_pred CCeEEEEec--------ccEEEEecccceeeccc-CCCCC--c-cchheeeCCceEEEEC-------CEEEEEcCccC
Confidence 456899988 46899999887655321 11222 2 3455556799999988 46888887654
No 139
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=91.05 E-value=13 Score=36.96 Aligned_cols=231 Identities=13% Similarity=0.078 Sum_probs=105.2
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEE
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILD 116 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD 116 (578)
++.+..++..++.||.+ ..+.++|..+....... ..+.......+..-++..++.||.++ .+.+|+
T Consensus 69 ~~~~s~d~~~l~s~s~D------g~v~vWd~~~~~~~~~~---~~~~~~v~~~~~sp~g~~lasg~~d~-----~i~v~~ 134 (354)
T 2pbi_B 69 CMDWCKDKRRIVSSSQD------GKVIVWDSFTTNKEHAV---TMPCTWVMACAYAPSGCAIACGGLDN-----KCSVYP 134 (354)
T ss_dssp EEEECTTSSEEEEEETT------SEEEEEETTTCCEEEEE---ECSSSCCCEEEECTTSSEEEEESTTS-----EEEEEE
T ss_pred EEEECCCCCEEEEEeCC------CeEEEEECCCCCcceEE---ecCCCCEEEEEECCCCCEEEEeeCCC-----CEEEEE
Confidence 34444333466667643 35888898776654322 11221222222222667778888653 466666
Q ss_pred CCCCeEEec-ccCCCCC-CCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCc
Q 008089 117 TSSHTWISP-SVRGEGP-EAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (578)
Q Consensus 117 ~~t~~W~~l-~~~g~~P-~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~ 193 (578)
+....-... .....+. ....-.+++.. ++..++.|+. ...+.++|+.+.+....-. +. .. .-
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~-----------D~~v~lwd~~~~~~~~~~~-~h--~~-~v 199 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG-----------DGTCALWDVESGQLLQSFH-GH--GA-DV 199 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEET-----------TSEEEEEETTTCCEEEEEE-CC--SS-CE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeC-----------CCcEEEEeCCCCeEEEEEc-CC--CC-Ce
Confidence 543210000 0000000 00001112222 2334445552 2457788887765432211 00 00 01
Q ss_pred eeEEE-e--CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCc
Q 008089 194 HTCSS-W--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDD 269 (578)
Q Consensus 194 h~~~~-~--~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~d 269 (578)
.++.. . ++.+++.|+.++ .+.+||+.+.+....-. .....-.++... ++.+++.|+.+. .
T Consensus 200 ~~~~~~~~~~g~~l~sgs~Dg------~v~~wd~~~~~~~~~~~----~h~~~v~~v~~~p~~~~l~s~s~D~------~ 263 (354)
T 2pbi_B 200 LCLDLAPSETGNTFVSGGCDK------KAMVWDMRSGQCVQAFE----THESDVNSVRYYPSGDAFASGSDDA------T 263 (354)
T ss_dssp EEEEECCCSSCCEEEEEETTS------CEEEEETTTCCEEEEEC----CCSSCEEEEEECTTSSEEEEEETTS------C
T ss_pred EEEEEEeCCCCCEEEEEeCCC------eEEEEECCCCcEEEEec----CCCCCeEEEEEeCCCCEEEEEeCCC------e
Confidence 11111 1 356788887654 38889998776543321 011111122222 456777777543 4
Q ss_pred EEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccC
Q 008089 270 LYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (578)
Q Consensus 270 v~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (578)
+.+||+.+..-..+... ...........+ ..++.+++.|+.+.
T Consensus 264 v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~--s~~g~~l~~g~~d~ 306 (354)
T 2pbi_B 264 CRLYDLRADREVAIYSK---ESIIFGASSVDF--SLSGRLLFAGYNDY 306 (354)
T ss_dssp EEEEETTTTEEEEEECC---TTCCSCEEEEEE--CTTSSEEEEEETTS
T ss_pred EEEEECCCCcEEEEEcC---CCcccceeEEEE--eCCCCEEEEEECCC
Confidence 88999988753333221 111222222223 34566677776543
No 140
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=90.84 E-value=24 Score=39.41 Aligned_cols=186 Identities=9% Similarity=0.018 Sum_probs=93.9
Q ss_pred cEEEEEcCCCcEEEeeecCCCCC-C-CcceeEEEE-CCEEEEEcccCCCCCCCcEEEEECCC------CeEE---ecccC
Q 008089 61 QVHVFDTVNQTWSQPVIKGSPPT-P-RDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSS------HTWI---SPSVR 128 (578)
Q Consensus 61 ~v~~yD~~t~~W~~l~~~g~~P~-~-R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~yD~~t------~~W~---~l~~~ 128 (578)
-+++||+.++++........... + ..-++.... ++.|||-. .. .-+++||..+ ..+. .....
T Consensus 393 GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT-~~-----~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (758)
T 3ott_A 393 SINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWIST-CL-----GGIFVVDKHKLMQSTSGQYIAEQNYSVH 466 (758)
T ss_dssp EEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEE-SS-----SCEEEEEHHHHHHCCSSEEECSEEECGG
T ss_pred cHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEE-CC-----CceEEEccccccccCCcceecccccccc
Confidence 48999999998877542211111 1 111222222 46788732 11 2388888653 2232 11111
Q ss_pred CCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEE-eCCEEEEE
Q 008089 129 GEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVI 206 (578)
Q Consensus 129 g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~-~~~~lyV~ 206 (578)
..++.. .-.+++.. ++.|+++||. ...+++||+.+.+++.+... .........++.. .++.|++-
T Consensus 467 ~~l~~~-~i~~i~~d~~g~lWi~~~t-----------~~Gl~~~d~~~~~~~~~~~~-~~~~~~~~~~i~~d~~g~lWig 533 (758)
T 3ott_A 467 NGLSGM-FINQIIPDNEGNVWVLLYN-----------NKGIDKINPRTREVTKLFAD-ELTGEKSPNYLLCDEDGLLWVG 533 (758)
T ss_dssp GTCSCS-CEEEEEECTTSCEEEEETT-----------CSSEEEEETTTTEEEEECTT-TSCGGGCEEEEEECTTSCEEEE
T ss_pred cccccc-eeeeEEEcCCCCEEEEccC-----------CCCcEEEeCCCCceEEecCC-CcCCCcccceEEECCCCCEEEE
Confidence 112211 11122222 3678887662 24588999999999887421 1111111112222 15677763
Q ss_pred ecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEE
Q 008089 207 GGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (578)
Q Consensus 207 GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l 283 (578)
.. +-+.+||+.+.++......+ +|. ..-.+++.-++.|++-.. +.+.+||+++.+....
T Consensus 534 -t~-------~Gl~~~~~~~~~~~~~~~~g-l~~-~~i~~i~~~~g~lWi~t~--------~Gl~~~~~~~~~~~~~ 592 (758)
T 3ott_A 534 -FH-------GGVMRINPKDESQQSISFGS-FSN-NEILSMTCVKNSIWVSTT--------NGLWIIDRKTMDARQQ 592 (758)
T ss_dssp -ET-------TEEEEECC--CCCCBCCCCC-----CCEEEEEEETTEEEEEES--------SCEEEEETTTCCEEEC
T ss_pred -ec-------CceEEEecCCCceEEecccC-CCc-cceEEEEECCCCEEEECC--------CCeEEEcCCCceeEEe
Confidence 21 23889999888876654222 332 223334444677777542 2389999999887654
No 141
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=90.84 E-value=11 Score=35.62 Aligned_cols=198 Identities=5% Similarity=-0.052 Sum_probs=102.4
Q ss_pred EEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEE-ECCEEEEEcccCCCCCCCcEEE
Q 008089 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRDLHI 114 (578)
Q Consensus 36 s~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~kIYv~GG~~~~~~~~~v~~ 114 (578)
.++++..++.||+.... .+.+++||+. ..+....... ....-++++. -++.+|+.... ...+++
T Consensus 18 ~~i~~d~~g~l~v~~~~------~~~v~~~d~~-~~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~ 82 (299)
T 2z2n_A 18 YGITVSDKGKVWITQHK------ANMISCINLD-GKITEYPLPT---PDAKVMCLTISSDGEVWFTENA-----ANKIGR 82 (299)
T ss_dssp EEEEECTTSCEEEEETT------TTEEEEECTT-CCEEEEECSS---TTCCEEEEEECTTSCEEEEETT-----TTEEEE
T ss_pred cceEECCCCCEEEEecC------CCcEEEEcCC-CCeEEecCCc---ccCceeeEEECCCCCEEEeCCC-----CCeEEE
Confidence 34444444457775321 2458999998 7776643211 1122233333 25678887532 135889
Q ss_pred EECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCc
Q 008089 115 LDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (578)
Q Consensus 115 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~ 193 (578)
||+. .++....... ....-++++.. ++++|+.... ...++++|+ +.......... ....-
T Consensus 83 ~~~~-g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----------~~~i~~~d~-~g~~~~~~~~~---~~~~~ 143 (299)
T 2z2n_A 83 ITKK-GIIKEYTLPN---PDSAPYGITEGPNGDIWFTEMN-----------GNRIGRITD-DGKIREYELPN---KGSYP 143 (299)
T ss_dssp ECTT-SCEEEEECSS---TTCCEEEEEECTTSCEEEEETT-----------TTEEEEECT-TCCEEEEECSS---TTCCE
T ss_pred ECCC-CcEEEEeCCC---cCCCceeeEECCCCCEEEEecC-----------CceEEEECC-CCCEEEecCCC---CCCCC
Confidence 9886 4454433110 11122334443 4678886531 245788888 55555443211 11222
Q ss_pred eeEEEe-CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEE
Q 008089 194 HTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLY 271 (578)
Q Consensus 194 h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~ 271 (578)
+.++.. ++.+|+.... .+.+++||+ +.+...+.... ....-..++.. ++.+|+.... .+.++
T Consensus 144 ~~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~------~~~i~ 207 (299)
T 2z2n_A 144 SFITLGSDNALWFTENQ------NNAIGRITE-SGDITEFKIPT---PASGPVGITKGNDDALWFVEII------GNKIG 207 (299)
T ss_dssp EEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSSEEEEETT------TTEEE
T ss_pred ceEEEcCCCCEEEEeCC------CCEEEEEcC-CCcEEEeeCCC---CCCcceeEEECCCCCEEEEccC------CceEE
Confidence 333333 5678876421 245889999 77776653211 11112233333 4567776432 23589
Q ss_pred EEECCCCcEEEEE
Q 008089 272 MIDVDSGLWTKVI 284 (578)
Q Consensus 272 ~ydi~t~~W~~l~ 284 (578)
+||+ ++.+..+.
T Consensus 208 ~~~~-~g~~~~~~ 219 (299)
T 2z2n_A 208 RITT-SGEITEFK 219 (299)
T ss_dssp EECT-TCCEEEEE
T ss_pred EECC-CCcEEEEE
Confidence 9999 77776653
No 142
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=90.77 E-value=13 Score=36.11 Aligned_cols=225 Identities=10% Similarity=0.022 Sum_probs=104.0
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEE
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILD 116 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD 116 (578)
++.+..++.+++.|+.+ ..+.++|..+..-...- .+. ..........-++++++.|+.++ .+.+||
T Consensus 18 ~~~fsp~~~~l~s~~~d------g~v~lWd~~~~~~~~~~-~~~--~~~v~~~~~~~~~~~l~s~s~d~-----~i~vwd 83 (304)
T 2ynn_A 18 GIDFHPTEPWVLTTLYS------GRVELWNYETQVEVRSI-QVT--ETPVRAGKFIARKNWIIVGSDDF-----RIRVFN 83 (304)
T ss_dssp EEEECSSSSEEEEEETT------SEEEEEETTTTEEEEEE-ECC--SSCEEEEEEEGGGTEEEEEETTS-----EEEEEE
T ss_pred EEEECCCCCEEEEEcCC------CcEEEEECCCCceeEEe-ecc--CCcEEEEEEeCCCCEEEEECCCC-----EEEEEE
Confidence 44444344466667743 35888999877643311 111 11111222223556777777543 588889
Q ss_pred CCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcce-EEE-eccCCCCCCCCCc
Q 008089 117 TSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV-WKR-ATTSGNPPSARDS 193 (578)
Q Consensus 117 ~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~-W~~-~~~~g~~p~~R~~ 193 (578)
+.+.+-...- .+ ....-.+++.. ++.+++.|+. -..+.++|+.+.. -.. +.. ....
T Consensus 84 ~~~~~~~~~~-~~---h~~~v~~~~~~~~~~~l~sgs~-----------D~~v~lWd~~~~~~~~~~~~~------h~~~ 142 (304)
T 2ynn_A 84 YNTGEKVVDF-EA---HPDYIRSIAVHPTKPYVLSGSD-----------DLTVKLWNWENNWALEQTFEG------HEHF 142 (304)
T ss_dssp TTTCCEEEEE-EC---CSSCEEEEEECSSSSEEEEEET-----------TSCEEEEEGGGTTEEEEEECC------CCSC
T ss_pred CCCCcEEEEE-eC---CCCcEEEEEEcCCCCEEEEECC-----------CCeEEEEECCCCcchhhhhcc------cCCc
Confidence 8876532210 11 01111222222 3456666663 2346677776542 111 110 0111
Q ss_pred eeEEEe---CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe---CCEEEEEcCccCCCCcc
Q 008089 194 HTCSSW---KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF---GKNLFVFGGFTDSQNLY 267 (578)
Q Consensus 194 h~~~~~---~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~---~~~iyV~GG~~~~~~~~ 267 (578)
-.++.+ ++.+++.|+.++ .+.+||+.+..-..... ....+....+... ++.+++.|+.+
T Consensus 143 v~~v~~~p~~~~~l~sgs~D~------~v~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~s~D------ 207 (304)
T 2ynn_A 143 VMCVAFNPKDPSTFASGCLDR------TVKVWSLGQSTPNFTLT---TGQERGVNYVDYYPLPDKPYMITASDD------ 207 (304)
T ss_dssp EEEEEECTTCTTEEEEEETTS------EEEEEETTCSSCSEEEE---CCCTTCEEEEEECCSTTCCEEEEEETT------
T ss_pred EEEEEECCCCCCEEEEEeCCC------eEEEEECCCCCccceec---cCCcCcEEEEEEEEcCCCCEEEEEcCC------
Confidence 122222 346777777653 37788875432111110 0111111112221 34566666653
Q ss_pred CcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCC
Q 008089 268 DDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (578)
Q Consensus 268 ~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (578)
..|.+||+.+..-...-.. .........+ ..++.+++.|+.+..
T Consensus 208 ~~i~iWd~~~~~~~~~~~~-----h~~~v~~~~~--~p~~~~l~s~s~Dg~ 251 (304)
T 2ynn_A 208 LTIKIWDYQTKSCVATLEG-----HMSNVSFAVF--HPTLPIIISGSEDGT 251 (304)
T ss_dssp SEEEEEETTTTEEEEEEEC-----CSSCEEEEEE--CSSSSEEEEEETTSC
T ss_pred CeEEEEeCCCCccceeeCC-----CCCCEEEEEE--CCCCCEEEEEcCCCe
Confidence 2489999988753322111 1111222222 235557777776654
No 143
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=90.75 E-value=13 Score=36.43 Aligned_cols=190 Identities=12% Similarity=0.069 Sum_probs=85.1
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCC--CeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSS--HTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYI 170 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t--~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~ 170 (578)
+++.++.|+.++ .+.++|+.. ..+..+..... ....-.+++.. ++.+++.|+.+ ..+.+
T Consensus 118 ~g~~las~s~D~-----~v~iwd~~~~~~~~~~~~~~~~--h~~~v~~v~~~p~~~~l~s~s~D-----------~~i~i 179 (330)
T 2hes_X 118 DGYYLATCSRDK-----SVWIWETDESGEEYECISVLQE--HSQDVKHVIWHPSEALLASSSYD-----------DTVRI 179 (330)
T ss_dssp TSCEEEEEETTS-----CEEEEECCTTCCCCEEEEEECC--CSSCEEEEEECSSSSEEEEEETT-----------SCEEE
T ss_pred CCCEEEEEeCCC-----EEEEEeccCCCCCeEEEEEecc--CCCceEEEEECCCCCEEEEEcCC-----------CeEEE
Confidence 566777777654 477888742 23332221100 00011122222 45667777732 34666
Q ss_pred EEcCcceEEEeccCCCCCCCCCceeEEEe-C--CEEEEEecCCCCCcccCceEEEECCC------CceEEecCCCCCCCC
Q 008089 171 LNTETFVWKRATTSGNPPSARDSHTCSSW-K--NKIIVIGGEDGHDYYLSDVHILDTDT------LTWKELNTSGMVLSP 241 (578)
Q Consensus 171 yd~~t~~W~~~~~~g~~p~~R~~h~~~~~-~--~~lyV~GG~~~~~~~~~di~~yD~~t------~~W~~v~~~g~~p~~ 241 (578)
+|..+..|+.+....... . .-.++... + +.+++.|+.++. +.+||+.+ ..|..+..... ...
T Consensus 180 W~~~~~~~~~~~~~~~h~-~-~v~~~~~~~~~~~~~l~s~s~D~~------v~iw~~~~~~~~~~~~~~~~~~~~~-~h~ 250 (330)
T 2hes_X 180 WKDYDDDWECVAVLNGHE-G-TVWSSDFDKTEGVFRLCSGSDDST------VRVWKYMGDDEDDQQEWVCEAILPD-VHK 250 (330)
T ss_dssp EEEETTEEEEEEEECCCS-S-CEEEEEECCSSSSCEEEEEETTSC------EEEEEEEEECTTSCEEEEEEEECCS-CCS
T ss_pred EECCCCCeeEEEEccCCC-C-cEEEEEecCCCCeeEEEEEeCCCe------EEEEEecCCCccccceeEEeeeccc-ccc
Confidence 777666666553221100 0 01112211 2 345666665433 55555432 24554433110 011
Q ss_pred CceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccC
Q 008089 242 RAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (578)
Q Consensus 242 R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (578)
..-.+++...+.+++.||.+. .|.+||..++.|..+....... ..+......+.+..++.+++.||.+.
T Consensus 251 ~~v~~v~~s~~~~l~s~~~dg------~v~iw~~~~~~~~~~~~~~~~h-~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 251 RQVYNVAWGFNGLIASVGADG------VLAVYEEVDGEWKVFAKRALCH-GVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp SCEEEEEECTTSCEEEEETTS------CEEEEEEETTEEEEEEEESCTT-TTSCEEEEEEC-----CCEEEEETTS
T ss_pred cceEEEEEcCCCEEEEEeCCC------EEEEEEcCCCceEEEecccccc-ccceEEEEEEecCCCceEEEEecCCC
Confidence 222233333455667776532 4889999998887664321111 11122222222222466777777654
No 144
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=90.71 E-value=14 Score=36.72 Aligned_cols=135 Identities=13% Similarity=0.141 Sum_probs=68.2
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE----CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCC
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV----GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAR 135 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~----~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R 135 (578)
..+.++|+.+.+....- .+.. ..-.+..+ ++.+++.|+.++ .+.+||+.+.+....- .+ ...
T Consensus 176 ~~v~lwd~~~~~~~~~~-~~h~----~~v~~~~~~~~~~g~~l~sgs~Dg-----~v~~wd~~~~~~~~~~-~~---h~~ 241 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSF-HGHG----ADVLCLDLAPSETGNTFVSGGCDK-----KAMVWDMRSGQCVQAF-ET---HES 241 (354)
T ss_dssp SEEEEEETTTCCEEEEE-ECCS----SCEEEEEECCCSSCCEEEEEETTS-----CEEEEETTTCCEEEEE-CC---CSS
T ss_pred CcEEEEeCCCCeEEEEE-cCCC----CCeEEEEEEeCCCCCEEEEEeCCC-----eEEEEECCCCcEEEEe-cC---CCC
Confidence 35888998877654311 1110 11112222 346777887654 4889998887654321 11 001
Q ss_pred cccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEe--CCEEEEEecCCCC
Q 008089 136 EGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGH 212 (578)
Q Consensus 136 ~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~--~~~lyV~GG~~~~ 212 (578)
.-.+++.. ++.+++.|+.+ ..+.+||+.+..-...-. .........++.+ ++.+++.|+.++
T Consensus 242 ~v~~v~~~p~~~~l~s~s~D-----------~~v~lwd~~~~~~~~~~~---~~~~~~~~~~~~~s~~g~~l~~g~~d~- 306 (354)
T 2pbi_B 242 DVNSVRYYPSGDAFASGSDD-----------ATCRLYDLRADREVAIYS---KESIIFGASSVDFSLSGRLLFAGYNDY- 306 (354)
T ss_dssp CEEEEEECTTSSEEEEEETT-----------SCEEEEETTTTEEEEEEC---CTTCCSCEEEEEECTTSSEEEEEETTS-
T ss_pred CeEEEEEeCCCCEEEEEeCC-----------CeEEEEECCCCcEEEEEc---CCCcccceeEEEEeCCCCEEEEEECCC-
Confidence 11122222 45667777732 346778887654332211 1111122223332 567777776543
Q ss_pred CcccCceEEEECCCCc
Q 008089 213 DYYLSDVHILDTDTLT 228 (578)
Q Consensus 213 ~~~~~di~~yD~~t~~ 228 (578)
.+.+||+.+..
T Consensus 307 -----~i~vwd~~~~~ 317 (354)
T 2pbi_B 307 -----TINVWDVLKGS 317 (354)
T ss_dssp -----CEEEEETTTCS
T ss_pred -----cEEEEECCCCc
Confidence 48889986654
No 145
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=90.67 E-value=7.4 Score=37.45 Aligned_cols=158 Identities=10% Similarity=0.124 Sum_probs=79.1
Q ss_pred CCEEEEE-------cccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE-C-CEEEEEccCCCCCCCCCcee
Q 008089 94 GENLYVF-------GGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVY 164 (578)
Q Consensus 94 ~~kIYv~-------GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~-~~lyvfGG~~~~~~~~~~~~ 164 (578)
++.+|+. +.. ...+++||+.+.++..............-++++.. + ++||+...
T Consensus 28 ~g~l~~~~~~~~~~~~~-----~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~------------ 90 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKP-----AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM------------ 90 (314)
T ss_dssp TSCEEEEETTCEETTEE-----CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET------------
T ss_pred CCCEEEEEeccccCCCC-----CCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC------------
Confidence 5678887 322 24699999888887654320000011112233333 3 68888654
Q ss_pred eceEEEEEcCcceEEEe-ccCCCCCCCCCceeEEE-eCCEEEEEecCCC---------CCcccCceEEEECCCCceEEec
Q 008089 165 YNDLYILNTETFVWKRA-TTSGNPPSARDSHTCSS-WKNKIIVIGGEDG---------HDYYLSDVHILDTDTLTWKELN 233 (578)
Q Consensus 165 ~ndv~~yd~~t~~W~~~-~~~g~~p~~R~~h~~~~-~~~~lyV~GG~~~---------~~~~~~di~~yD~~t~~W~~v~ 233 (578)
.+.+++||+. .+...+ ...........-+.++. .++.+|+...... .......+++||+. .+...+.
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 1358899998 776655 32111111111223333 3677887654321 11122468999987 5555442
Q ss_pred CCCCCCCCCceeEEEEe----C-C-EEEEEcCccCCCCccCcEEEEECC-CCcEE
Q 008089 234 TSGMVLSPRAGHSTVAF----G-K-NLFVFGGFTDSQNLYDDLYMIDVD-SGLWT 281 (578)
Q Consensus 234 ~~g~~p~~R~~hs~v~~----~-~-~iyV~GG~~~~~~~~~dv~~ydi~-t~~W~ 281 (578)
.. .. .-...+.. . + .+|+.... .+.|++||+. ++.+.
T Consensus 169 ~~--~~---~~~~i~~~~~~d~dg~~l~v~~~~------~~~i~~~~~~~~g~~~ 212 (314)
T 1pjx_A 169 TA--FQ---FPNGIAVRHMNDGRPYQLIVAETP------TKKLWSYDIKGPAKIE 212 (314)
T ss_dssp EE--ES---SEEEEEEEECTTSCEEEEEEEETT------TTEEEEEEEEETTEEE
T ss_pred cC--CC---CcceEEEecccCCCCCEEEEEECC------CCeEEEEECCCCCccc
Confidence 21 11 11233333 3 3 46665432 2458999976 45443
No 146
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=90.61 E-value=13 Score=35.98 Aligned_cols=187 Identities=8% Similarity=0.032 Sum_probs=88.0
Q ss_pred cCCCEEEEEcCCCCCCCCcccEEEEEcCCCc----EEEeeecCCCCCCCcceeEEEECCE-EEEEcccCCCCCCCcEEEE
Q 008089 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQT----WSQPVIKGSPPTPRDSHSCTTVGEN-LYVFGGTDGMNPLRDLHIL 115 (578)
Q Consensus 41 ~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~----W~~l~~~g~~P~~R~~hs~~~~~~k-IYv~GG~~~~~~~~~v~~y 115 (578)
.+++ +++.|+.+ ..+.+||..+.. ...+. + . .......+..-+++ +++.|+.++ .+.+|
T Consensus 21 ~~~~-~l~~~~~d------~~v~iw~~~~~~~~~~~~~~~--~-~-~~~v~~~~~~~~~~~~l~~~~~dg-----~i~~w 84 (342)
T 1yfq_A 21 PSKS-LLLITSWD------GSLTVYKFDIQAKNVDLLQSL--R-Y-KHPLLCCNFIDNTDLQIYVGTVQG-----EILKV 84 (342)
T ss_dssp GGGT-EEEEEETT------SEEEEEEEETTTTEEEEEEEE--E-C-SSCEEEEEEEESSSEEEEEEETTS-----CEEEE
T ss_pred CCCC-EEEEEcCC------CeEEEEEeCCCCccccceeee--e-c-CCceEEEEECCCCCcEEEEEcCCC-----eEEEE
Confidence 3444 55666532 357888877665 33221 1 1 11111222223666 777777553 58999
Q ss_pred EC-CCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcce-------EEEeccCCCC
Q 008089 116 DT-SSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV-------WKRATTSGNP 187 (578)
Q Consensus 116 D~-~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~-------W~~~~~~g~~ 187 (578)
|+ .+.....+.. . +....-.+++...+.+++.|+. ...+.++|+.+.. .+.+.. .
T Consensus 85 d~~~~~~~~~~~~--~-~~~~~v~~l~~~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~---~ 147 (342)
T 1yfq_A 85 DLIGSPSFQALTN--N-EANLGICRICKYGDDKLIAASW-----------DGLIEVIDPRNYGDGVIAVKNLNSNN---T 147 (342)
T ss_dssp CSSSSSSEEECBS--C-CCCSCEEEEEEETTTEEEEEET-----------TSEEEEECHHHHTTBCEEEEESCSSS---S
T ss_pred EeccCCceEeccc--c-CCCCceEEEEeCCCCEEEEEcC-----------CCeEEEEcccccccccccccCCeeeE---E
Confidence 98 8776644431 0 0111122333333556666663 2456777766410 111111 1
Q ss_pred CCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCC-Cc--eEEecCCCCCCCCCceeEEEEe--CCEEEEEcCccC
Q 008089 188 PSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDT-LT--WKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTD 262 (578)
Q Consensus 188 p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t-~~--W~~v~~~g~~p~~R~~hs~v~~--~~~iyV~GG~~~ 262 (578)
.....-.++....+. ++.|+.+ ..+.+||+.+ .. ...... +....-.++... ++.+++.|+...
T Consensus 148 ~~~~~v~~~~~~~~~-l~~~~~d------~~i~i~d~~~~~~~~~~~~~~----~~~~~i~~i~~~~~~~~~l~~~~~dg 216 (342)
T 1yfq_A 148 KVKNKIFTMDTNSSR-LIVGMNN------SQVQWFRLPLCEDDNGTIEES----GLKYQIRDVALLPKEQEGYACSSIDG 216 (342)
T ss_dssp SSCCCEEEEEECSSE-EEEEEST------TEEEEEESSCCTTCCCEEEEC----SCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred eeCCceEEEEecCCc-EEEEeCC------CeEEEEECCccccccceeeec----CCCCceeEEEECCCCCCEEEEEecCC
Confidence 111222233333455 5555543 3488899877 33 222221 111222233333 456777776532
Q ss_pred CCCccCcEEEEECCC
Q 008089 263 SQNLYDDLYMIDVDS 277 (578)
Q Consensus 263 ~~~~~~dv~~ydi~t 277 (578)
.+.+|+...
T Consensus 217 ------~i~i~~~~~ 225 (342)
T 1yfq_A 217 ------RVAVEFFDD 225 (342)
T ss_dssp ------EEEEEECCT
T ss_pred ------cEEEEEEcC
Confidence 356655544
No 147
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=90.59 E-value=24 Score=39.01 Aligned_cols=197 Identities=11% Similarity=0.017 Sum_probs=99.2
Q ss_pred cccEEEEEcCCCcEEEeeecCCCCCCCcceeEE-EECCEEEEEcccCCCCCCCcEEEEECCC------C--eEEecccCC
Q 008089 59 TNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCT-TVGENLYVFGGTDGMNPLRDLHILDTSS------H--TWISPSVRG 129 (578)
Q Consensus 59 ~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~-~~~~kIYv~GG~~~~~~~~~v~~yD~~t------~--~W~~l~~~g 129 (578)
...++++++.+.......+......+....+.. .-+++..+++...+....+++|++|+.+ . .+..+...
T Consensus 207 ~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~- 285 (710)
T 2xdw_A 207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN- 285 (710)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS-
T ss_pred CCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC-
Confidence 345888888876532111111111122222222 2245544443332222357899999876 3 57665421
Q ss_pred CCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcc---eEEEeccCCCCCCC-CCceeEEEe-CCEEE
Q 008089 130 EGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF---VWKRATTSGNPPSA-RDSHTCSSW-KNKII 204 (578)
Q Consensus 130 ~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~---~W~~~~~~g~~p~~-R~~h~~~~~-~~~ly 204 (578)
... ........++.||+.+... .....++++|+.+. .|+.+... .. ..-..+... ++.++
T Consensus 286 --~~~-~~~~~s~dg~~l~~~s~~~--------~~~~~l~~~d~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~lv 350 (710)
T 2xdw_A 286 --FEG-EYDYVTNEGTVFTFKTNRH--------SPNYRLINIDFTDPEESKWKVLVPE----HEKDVLEWVACVRSNFLV 350 (710)
T ss_dssp --SSS-CEEEEEEETTEEEEEECTT--------CTTCEEEEEETTSCCGGGCEEEECC----CSSCEEEEEEEETTTEEE
T ss_pred --CCc-EEEEEeccCCEEEEEECCC--------CCCCEEEEEeCCCCCcccceeccCC----CCCCeEEEEEEEcCCEEE
Confidence 111 1112233467888876531 11356889998875 58877532 11 112233444 67777
Q ss_pred EEecCCCCCcccCceEEEECCCCc-eEEecCCCCCCCCCceeEEEEe--CC-EEEEE-cCccCCCCccCcEEEEECCCCc
Q 008089 205 VIGGEDGHDYYLSDVHILDTDTLT-WKELNTSGMVLSPRAGHSTVAF--GK-NLFVF-GGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 205 V~GG~~~~~~~~~di~~yD~~t~~-W~~v~~~g~~p~~R~~hs~v~~--~~-~iyV~-GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
+....++ ...++++|+.+++ ...+.. + .. ....+.. ++ .+++. .+.. .-..+|.||+.++.
T Consensus 351 ~~~~~~g----~~~l~~~~~~~g~~~~~l~~----~-~~-~v~~~~~s~d~~~l~~~~ss~~----~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 351 LCYLHDV----KNTLQLHDLATGALLKIFPL----E-VG-SVVGYSGQKKDTEIFYQFTSFL----SPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETT----EEEEEEEETTTCCEEEEECC----C-SS-EEEEEECCTTCSEEEEEEECSS----CCCEEEEEETTSSS
T ss_pred EEEEECC----EEEEEEEECCCCCEEEecCC----C-Cc-eEEEEecCCCCCEEEEEEeCCC----CCCEEEEEECCCCc
Confidence 7665432 2458999985554 455432 2 11 1112222 23 44333 3332 23569999999877
Q ss_pred --EEEEEe
Q 008089 280 --WTKVIT 285 (578)
Q Consensus 280 --W~~l~~ 285 (578)
++.+..
T Consensus 417 ~~~~~l~~ 424 (710)
T 2xdw_A 417 LEPRVFRE 424 (710)
T ss_dssp CCCEEEEE
T ss_pred cceEEeee
Confidence 766654
No 148
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=90.06 E-value=13 Score=39.46 Aligned_cols=106 Identities=8% Similarity=0.057 Sum_probs=53.9
Q ss_pred ceEEEEEcCcceEEEeccCCCCCCCC-CceeEEEe-C-CEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCC
Q 008089 166 NDLYILNTETFVWKRATTSGNPPSAR-DSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPR 242 (578)
Q Consensus 166 ndv~~yd~~t~~W~~~~~~g~~p~~R-~~h~~~~~-~-~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R 242 (578)
..+.+||..+.+-...-. ...... .-.+++.. + +.+++.|+.++ .+.+||+.+.+....-.........
T Consensus 183 ~~v~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~ 254 (615)
T 1pgu_A 183 GSVVFYQGPPFKFSASDR--THHKQGSFVRDVEFSPDSGEFVITVGSDR------KISCFDGKSGEFLKYIEDDQEPVQG 254 (615)
T ss_dssp TEEEEEETTTBEEEEEEC--SSSCTTCCEEEEEECSTTCCEEEEEETTC------CEEEEETTTCCEEEECCBTTBCCCS
T ss_pred CcEEEEeCCCcceeeeec--ccCCCCceEEEEEECCCCCCEEEEEeCCC------eEEEEECCCCCEeEEecccccccCC
Confidence 457788877665433211 001000 11222222 5 67777777643 4889998876654432100001111
Q ss_pred ceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEe
Q 008089 243 AGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 243 ~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~ 285 (578)
.-.++...++.+++.|+.+ ..+.+||+.+........
T Consensus 255 ~v~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~ 291 (615)
T 1pgu_A 255 GIFALSWLDSQKFATVGAD------ATIRVWDVTTSKCVQKWT 291 (615)
T ss_dssp CEEEEEESSSSEEEEEETT------SEEEEEETTTTEEEEEEE
T ss_pred ceEEEEEcCCCEEEEEcCC------CcEEEEECCCCcEEEEEc
Confidence 1122222266677777653 348999999876554433
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=90.05 E-value=11 Score=36.29 Aligned_cols=206 Identities=13% Similarity=0.069 Sum_probs=94.7
Q ss_pred EEEEcCCCEEEEEcCC---CCCCC--CcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CC-EEEEEcccCCCCCC
Q 008089 37 CNAIKGGRFLYVFGGY---GKDNC--QTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GE-NLYVFGGTDGMNPL 109 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~---~~~~~--~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~-kIYv~GG~~~~~~~ 109 (578)
.....+++.||+.... ..... ..+.+++||+.+.+.......+. .-+.++.. ++ .||+.+
T Consensus 87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~-------- 153 (337)
T 1pby_B 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR-----QITMLAWARDGSKLYGLG-------- 153 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS-----SCCCEEECTTSSCEEEES--------
T ss_pred eEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC-----CcceeEECCCCCEEEEeC--------
Confidence 3344566677776421 11100 12579999998876654221221 11223322 34 466663
Q ss_pred CcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCC------------CCCCCCCceeeceEEEEEcCcce
Q 008089 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCG------------KSSNTNDEVYYNDLYILNTETFV 177 (578)
Q Consensus 110 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~------------~~~~~~~~~~~ndv~~yd~~t~~ 177 (578)
+.+++||+.+.+-...-..+..+.+. .....+..+|+.+... .............++++|+.+.+
T Consensus 154 ~~i~~~d~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 230 (337)
T 1pby_B 154 RDLHVMDPEAGTLVEDKPIQSWEAET---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230 (337)
T ss_dssp SSEEEEETTTTEEEEEECSTTTTTTT---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred CeEEEEECCCCcEeeeeeccccCCCc---eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC
Confidence 36999999988754322111111111 1111112233222100 00000001122368899998876
Q ss_pred EEEeccCCCCCCCCCceeEEEe-CC-EEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CC-E
Q 008089 178 WKRATTSGNPPSARDSHTCSSW-KN-KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GK-N 253 (578)
Q Consensus 178 W~~~~~~g~~p~~R~~h~~~~~-~~-~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~-~ 253 (578)
-..+... +.....+.++.. ++ .+|+. .+.+++||+.+.+-...-..+ ..-.+++.. ++ .
T Consensus 231 ~~~~~~~---~~~~~~~~~~~s~dg~~l~~~---------~~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~ 293 (337)
T 1pby_B 231 MAMREVR---IMDVFYFSTAVNPAKTRAFGA---------YNVLESFDLEKNASIKRVPLP-----HSYYSVNVSTDGST 293 (337)
T ss_dssp EEEEEEE---ECSSCEEEEEECTTSSEEEEE---------ESEEEEEETTTTEEEEEEECS-----SCCCEEEECTTSCE
T ss_pred ceEeecC---CCCCceeeEEECCCCCEEEEe---------CCeEEEEECCCCcCcceecCC-----CceeeEEECCCCCE
Confidence 5433211 111111223322 33 45543 156999999886544332211 112233333 34 4
Q ss_pred EEEEcCccCCCCccCcEEEEECCCCcEEE
Q 008089 254 LFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (578)
Q Consensus 254 iyV~GG~~~~~~~~~dv~~ydi~t~~W~~ 282 (578)
||+ ++. .+.|.+||+.+..-..
T Consensus 294 l~~-~~~------~~~i~v~d~~~~~~~~ 315 (337)
T 1pby_B 294 VWL-GGA------LGDLAAYDAETLEKKG 315 (337)
T ss_dssp EEE-ESB------SSEEEEEETTTCCEEE
T ss_pred EEE-EcC------CCcEEEEECcCCcEEE
Confidence 555 443 2459999998876443
No 150
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=89.94 E-value=11 Score=36.48 Aligned_cols=65 Identities=8% Similarity=0.111 Sum_probs=33.2
Q ss_pred cCCCEEEEEcCCCCCCCCcccEEEEEc-CCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCC
Q 008089 41 KGGRFLYVFGGYGKDNCQTNQVHVFDT-VNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSS 119 (578)
Q Consensus 41 ~~g~~Iyv~GG~~~~~~~~~~v~~yD~-~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t 119 (578)
.+++.+++.|+.+ ..+.+||. .+.....+. +. +....-.++....+.+++.|+.+ ..+.+||+.+
T Consensus 66 ~~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~--~~-~~~~~v~~l~~~~~~~l~s~~~d-----~~i~iwd~~~ 131 (342)
T 1yfq_A 66 DNTDLQIYVGTVQ------GEILKVDLIGSPSFQALT--NN-EANLGICRICKYGDDKLIAASWD-----GLIEVIDPRN 131 (342)
T ss_dssp ESSSEEEEEEETT------SCEEEECSSSSSSEEECB--SC-CCCSCEEEEEEETTTEEEEEETT-----SEEEEECHHH
T ss_pred CCCCcEEEEEcCC------CeEEEEEeccCCceEecc--cc-CCCCceEEEEeCCCCEEEEEcCC-----CeEEEEcccc
Confidence 3444155556643 35899999 877765543 10 01111122222225566666654 3477777654
No 151
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=89.88 E-value=17 Score=36.12 Aligned_cols=71 Identities=15% Similarity=0.118 Sum_probs=36.7
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCC--CCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEEEEECC
Q 008089 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSG--MVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVD 276 (578)
Q Consensus 200 ~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g--~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~ 276 (578)
++ +++.|+.+ ..+.+||+.+.+....-... ..+....-.+++.. ++++++.|+.+. ....|.+||+.
T Consensus 197 ~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~---~~g~i~i~d~~ 266 (397)
T 1sq9_A 197 RG-LIATGFNN------GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN---SFGCITLYETE 266 (397)
T ss_dssp TS-EEEEECTT------SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET---TEEEEEEEETT
T ss_pred Cc-eEEEEeCC------CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC---CCceEEEEECC
Confidence 56 67777644 34889998876543322200 00001112222222 456777776531 11358999998
Q ss_pred CCcE
Q 008089 277 SGLW 280 (578)
Q Consensus 277 t~~W 280 (578)
+..-
T Consensus 267 ~~~~ 270 (397)
T 1sq9_A 267 FGER 270 (397)
T ss_dssp TCCE
T ss_pred CCcc
Confidence 7753
No 152
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=89.86 E-value=5 Score=39.08 Aligned_cols=191 Identities=12% Similarity=0.099 Sum_probs=88.5
Q ss_pred EcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCCcEEEEECC
Q 008089 40 IKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTS 118 (578)
Q Consensus 40 v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~yD~~ 118 (578)
..+++ +++.|+.+ ..+.++|..+.+-...- .+. ...-.+++.. ++.+++.|+.++ .+.++|+.
T Consensus 64 ~~~~~-~l~s~s~d------~~i~vwd~~~~~~~~~~-~~h---~~~v~~~~~~~~~~~l~sgs~D~-----~v~lWd~~ 127 (304)
T 2ynn_A 64 IARKN-WIIVGSDD------FRIRVFNYNTGEKVVDF-EAH---PDYIRSIAVHPTKPYVLSGSDDL-----TVKLWNWE 127 (304)
T ss_dssp EGGGT-EEEEEETT------SEEEEEETTTCCEEEEE-ECC---SSCEEEEEECSSSSEEEEEETTS-----CEEEEEGG
T ss_pred eCCCC-EEEEECCC------CEEEEEECCCCcEEEEE-eCC---CCcEEEEEEcCCCCEEEEECCCC-----eEEEEECC
Confidence 34444 55556642 35888998876543211 111 1111122222 456677777654 47788876
Q ss_pred CC-eEEecccCCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcce--EEEeccCCCCCCCCCc
Q 008089 119 SH-TWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--WKRATTSGNPPSARDS 193 (578)
Q Consensus 119 t~-~W~~l~~~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~--W~~~~~~g~~p~~R~~ 193 (578)
+. .-.. ...+ ....-.+++.. ++.+++.|+.+ ..+.++|+.+.. ..... ...+..
T Consensus 128 ~~~~~~~-~~~~---h~~~v~~v~~~p~~~~~l~sgs~D-----------~~v~iwd~~~~~~~~~~~~-----~~~~~v 187 (304)
T 2ynn_A 128 NNWALEQ-TFEG---HEHFVMCVAFNPKDPSTFASGCLD-----------RTVKVWSLGQSTPNFTLTT-----GQERGV 187 (304)
T ss_dssp GTTEEEE-EECC---CCSCEEEEEECTTCTTEEEEEETT-----------SEEEEEETTCSSCSEEEEC-----CCTTCE
T ss_pred CCcchhh-hhcc---cCCcEEEEEECCCCCCEEEEEeCC-----------CeEEEEECCCCCccceecc-----CCcCcE
Confidence 54 2111 1111 01111122222 34567777732 346677765432 11111 001111
Q ss_pred eeEEEe---CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCc
Q 008089 194 HTCSSW---KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDD 269 (578)
Q Consensus 194 h~~~~~---~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~d 269 (578)
..+... ++.+++.|+.++ .+.+||+.+..-...-. + ....-.+++.. ++.+++.|+.+. .
T Consensus 188 ~~~~~~~~~~~~~l~s~s~D~------~i~iWd~~~~~~~~~~~-~---h~~~v~~~~~~p~~~~l~s~s~Dg------~ 251 (304)
T 2ynn_A 188 NYVDYYPLPDKPYMITASDDL------TIKIWDYQTKSCVATLE-G---HMSNVSFAVFHPTLPIIISGSEDG------T 251 (304)
T ss_dssp EEEEECCSTTCCEEEEEETTS------EEEEEETTTTEEEEEEE-C---CSSCEEEEEECSSSSEEEEEETTS------C
T ss_pred EEEEEEEcCCCCEEEEEcCCC------eEEEEeCCCCccceeeC-C---CCCCEEEEEECCCCCEEEEEcCCC------e
Confidence 111111 455677776543 48888987764322111 1 11111122222 345677777543 3
Q ss_pred EEEEECCCCcEEE
Q 008089 270 LYMIDVDSGLWTK 282 (578)
Q Consensus 270 v~~ydi~t~~W~~ 282 (578)
|.+||+.+.+-..
T Consensus 252 i~iWd~~~~~~~~ 264 (304)
T 2ynn_A 252 LKIWNSSTYKVEK 264 (304)
T ss_dssp EEEEETTTCCEEE
T ss_pred EEEEECCCCceee
Confidence 8899998876444
No 153
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=89.85 E-value=4.8 Score=40.75 Aligned_cols=196 Identities=10% Similarity=0.050 Sum_probs=91.8
Q ss_pred EEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEEECCCCeE
Q 008089 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (578)
Q Consensus 45 ~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~yD~~t~~W 122 (578)
.+++.|+.+ ..+.++|..+.+....-..... ...-.++.+ ++++++.|+.+ ..+.+||+.+.+-
T Consensus 145 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~ 210 (402)
T 2aq5_A 145 NVLLSAGCD------NVILVWDVGTGAAVLTLGPDVH---PDTIYSVDWSRDGALICTSCRD-----KRVRVIEPRKGTV 210 (402)
T ss_dssp TEEEEEETT------SCEEEEETTTTEEEEEECTTTC---CSCEEEEEECTTSSCEEEEETT-----SEEEEEETTTTEE
T ss_pred CEEEEEcCC------CEEEEEECCCCCccEEEecCCC---CCceEEEEECCCCCEEEEEecC-----CcEEEEeCCCCce
Confidence 366666643 3588999988765432100111 111122222 56677777654 3599999988765
Q ss_pred EecccCCCCCCCCcccEEEE-ECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceE--EEeccCCCCCCCCCceeEEEe
Q 008089 123 ISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW--KRATTSGNPPSARDSHTCSSW 199 (578)
Q Consensus 123 ~~l~~~g~~P~~R~~hs~~~-~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W--~~~~~~g~~p~~R~~h~~~~~ 199 (578)
...-..+. ...+ ...++. .++++++.|.. . .....+.+||+.+..- ..... ........++..
T Consensus 211 ~~~~~~~~-~~~~-~~~~~~~~~~~~l~~g~~-~-------~~d~~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~s 276 (402)
T 2aq5_A 211 VAEKDRPH-EGTR-PVHAVFVSEGKILTTGFS-R-------MSERQVALWDTKHLEEPLSLQEL----DTSSGVLLPFFD 276 (402)
T ss_dssp EEEEECSS-CSSS-CCEEEECSTTEEEEEEEC-T-------TCCEEEEEEETTBCSSCSEEEEC----CCCSSCEEEEEE
T ss_pred eeeeccCC-CCCc-ceEEEEcCCCcEEEEecc-C-------CCCceEEEEcCccccCCceEEec----cCCCceeEEEEc
Confidence 33210111 1111 122333 35677776621 0 0135688888876431 11110 111111222222
Q ss_pred --CCEEEEEecCCCCCcccCceEEEECCCCc--eEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEEC
Q 008089 200 --KNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDV 275 (578)
Q Consensus 200 --~~~lyV~GG~~~~~~~~~di~~yD~~t~~--W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi 275 (578)
++.|++.|+.++ .+.+||+.+.. ...+.. ......-.+++...+..+++.+. ..+.+|++
T Consensus 277 ~~~~~l~~~g~~dg------~i~i~d~~~~~~~~~~l~~---~~~~~~v~~~~~sp~~~~~~s~~-------~~~~~~~l 340 (402)
T 2aq5_A 277 PDTNIVYLCGKGDS------SIRYFEITSEAPFLHYLSM---FSSKESQRGMGYMPKRGLEVNKC-------EIARFYKL 340 (402)
T ss_dssp TTTTEEEEEETTCS------CEEEEEECSSTTCEEEEEE---ECCSSCCSEEEECCGGGSCGGGT-------EEEEEEEE
T ss_pred CCCCEEEEEEcCCC------eEEEEEecCCCcceEeecc---cccCCcccceEEecccccceecc-------eeEEEEEc
Confidence 345666665443 37888887665 334332 11111112233333332332221 14677777
Q ss_pred CCCcEEEEE
Q 008089 276 DSGLWTKVI 284 (578)
Q Consensus 276 ~t~~W~~l~ 284 (578)
.++..+.+.
T Consensus 341 ~~~~~~~i~ 349 (402)
T 2aq5_A 341 HERKCEPIA 349 (402)
T ss_dssp ETTEEEEEE
T ss_pred CCCcEEEEE
Confidence 777655543
No 154
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=89.84 E-value=9.7 Score=35.68 Aligned_cols=182 Identities=12% Similarity=0.010 Sum_probs=90.5
Q ss_pred EEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCCcEEEEECCCCeEE
Q 008089 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWI 123 (578)
Q Consensus 45 ~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~ 123 (578)
.||+... .+.+++||+.......+.. .....-++++.. ++++|+.... ...+++|+..+....
T Consensus 79 ~l~v~~~-------~~~i~~~d~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~ 142 (270)
T 1rwi_B 79 TVYVTDF-------NNRVVTLAAGSNNQTVLPF----DGLNYPEGLAVDTQGAVYVADRG-----NNRVVKLAAGSKTQT 142 (270)
T ss_dssp CEEEEET-------TTEEEEECTTCSCCEECCC----CSCSSEEEEEECTTCCEEEEEGG-----GTEEEEECTTCCSCE
T ss_pred CEEEEcC-------CCEEEEEeCCCceEeeeec----CCcCCCcceEECCCCCEEEEECC-----CCEEEEEECCCceeE
Confidence 3776543 1358888887665443321 111122333333 5678887532 135888877665443
Q ss_pred ecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEe-CC
Q 008089 124 SPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KN 201 (578)
Q Consensus 124 ~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~-~~ 201 (578)
.... ... ..-.++++. ++++|+.... .+.+++||+.+..-...... . . ..-..++.. ++
T Consensus 143 ~~~~-~~~---~~p~~i~~~~~g~l~v~~~~-----------~~~i~~~~~~~~~~~~~~~~-~--~-~~p~~i~~d~~g 203 (270)
T 1rwi_B 143 VLPF-TGL---NDPDGVAVDNSGNVYVTDTD-----------NNRVVKLEAESNNQVVLPFT-D--I-TAPWGIAVDEAG 203 (270)
T ss_dssp ECCC-CSC---CSCCCEEECTTCCEEEEEGG-----------GTEEEEECTTTCCEEECCCS-S--C-CSEEEEEECTTC
T ss_pred eecc-ccC---CCceeEEEeCCCCEEEEECC-----------CCEEEEEecCCCceEeeccc-C--C-CCceEEEECCCC
Confidence 2211 111 112234443 4678886541 25688999887654433211 1 1 112233333 45
Q ss_pred EEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEEEEECCC
Q 008089 202 KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (578)
Q Consensus 202 ~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t 277 (578)
.||+....+ +.+.+||+.+..-......+ ...-.+++.. ++.|||....+ +.|.+|++..
T Consensus 204 ~l~v~~~~~------~~v~~~~~~~~~~~~~~~~~----~~~p~~i~~~~~g~l~v~~~~~------~~v~~~~~~~ 264 (270)
T 1rwi_B 204 TVYVTEHNT------NQVVKLLAGSTTSTVLPFTG----LNTPLAVAVDSDRTVYVADRGN------DRVVKLTSLE 264 (270)
T ss_dssp CEEEEETTT------SCEEEECTTCSCCEECCCCS----CSCEEEEEECTTCCEEEEEGGG------TEEEEECCCG
T ss_pred CEEEEECCC------CcEEEEcCCCCcceeeccCC----CCCceeEEECCCCCEEEEECCC------CEEEEEcCCC
Confidence 788865322 34889998775433322111 1112233332 35677775542 3477777654
No 155
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=89.69 E-value=13 Score=34.88 Aligned_cols=155 Identities=15% Similarity=0.180 Sum_probs=80.3
Q ss_pred eEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEe--ccc-CCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCce
Q 008089 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWIS--PSV-RGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEV 163 (578)
Q Consensus 89 s~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~--l~~-~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~ 163 (578)
+++...+.+|+|=| ..+|+++.....+.. +.. -..+|. ... ++... ++++|+|-|
T Consensus 28 Ai~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iD-Aa~~~~~~~~iyfFkG----------- 87 (207)
T 1pex_A 28 AITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSFWPELPN-RID-AAYEHPSHDLIFIFRG----------- 87 (207)
T ss_dssp EEEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHHCTTSCS-SCC-EEEEETTTTEEEEEET-----------
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCcCCCceehhHhccCCCC-Ccc-EEEEeccCCcEEEEcc-----------
Confidence 34557899999976 357888765433321 111 112342 222 22223 589999988
Q ss_pred eeceEEEEEcCcceE---EEeccCCCCCCCCCceeEEEe--CCEEEEEecCCCCCcccCceEEEECCCCceEE-----ec
Q 008089 164 YYNDLYILNTETFVW---KRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE-----LN 233 (578)
Q Consensus 164 ~~ndv~~yd~~t~~W---~~~~~~g~~p~~R~~h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~-----v~ 233 (578)
+.+|+|+-.+..- +.+...|-+.....--++... ++++|+|-| +..|+||..+++-.. +.
T Consensus 88 --~~~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG--------~~ywr~d~~~~~~d~gyPr~i~ 157 (207)
T 1pex_A 88 --RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG--------NQVWRYDDTNHIMDKDYPRLIE 157 (207)
T ss_dssp --TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET--------TEEEEEETTTTEECSSCCCBHH
T ss_pred --CEEEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC--------CEEEEEeCcCccccCCCCccHH
Confidence 3456665332111 223222221111112233333 489999976 347899987643110 00
Q ss_pred CCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEE
Q 008089 234 TSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (578)
Q Consensus 234 ~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~ 282 (578)
. .-+..+..-.++...++++|+|-|. ..|+||..+.+-..
T Consensus 158 ~-~~~Gip~~iDaAf~~~g~~YfFkg~--------~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 158 E-DFPGIGDKVDAVYEKNGYIYFFNGP--------IQFEYSIWSNRIVR 197 (207)
T ss_dssp H-HSTTSCSCCSEEEEETTEEEEEETT--------EEEEEETTTTEEEE
T ss_pred H-cCCCCCCCccEEEEcCCcEEEEECC--------EEEEEeCCccEEec
Confidence 0 0001122233455568999999774 38999988775443
No 156
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=89.46 E-value=13 Score=43.85 Aligned_cols=201 Identities=10% Similarity=0.079 Sum_probs=95.8
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEE
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHI 114 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~ 114 (578)
++++..++.+++.||.+ +.+.+||..+.+-...- .+ ....-.++.+ ++++++.|+.+ ..+.+
T Consensus 620 ~~~~s~~~~~l~s~~~d------~~i~vw~~~~~~~~~~~-~~----h~~~v~~~~~s~~~~~l~s~~~d-----~~v~v 683 (1249)
T 3sfz_A 620 HACFSQDGQRIASCGAD------KTLQVFKAETGEKLLDI-KA----HEDEVLCCAFSSDDSYIATCSAD-----KKVKI 683 (1249)
T ss_dssp EEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEE-CC----CSSCEEEEEECTTSSEEEEEETT-----SEEEE
T ss_pred EEEECCCCCEEEEEeCC------CeEEEEECCCCCEEEEe-cc----CCCCEEEEEEecCCCEEEEEeCC-----CeEEE
Confidence 44454444466667643 35899999887654311 11 1112222222 56677777654 35899
Q ss_pred EECCCCeEEecccCCCCCCCCcccEEEEE-C--C-EEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCC
Q 008089 115 LDTSSHTWISPSVRGEGPEAREGHSAALV-G--K-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSA 190 (578)
Q Consensus 115 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~--~-~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~ 190 (578)
+|+.+.+....- .+ ......++.. . + .+++.|+. ...+.++|+.+......-. ....
T Consensus 684 wd~~~~~~~~~~-~~----~~~~v~~~~~~~~~~~~~l~sg~~-----------d~~v~vwd~~~~~~~~~~~---~h~~ 744 (1249)
T 3sfz_A 684 WDSATGKLVHTY-DE----HSEQVNCCHFTNKSNHLLLATGSN-----------DFFLKLWDLNQKECRNTMF---GHTN 744 (1249)
T ss_dssp EETTTCCEEEEE-EC----CSSCEEEEEECSSSSCCEEEEEET-----------TSCEEEEETTSSSEEEEEC---CCSS
T ss_pred EECCCCceEEEE-cC----CCCcEEEEEEecCCCceEEEEEeC-----------CCeEEEEECCCcchhheec---CCCC
Confidence 999887653321 11 1111222222 2 2 35555552 2347788888776443211 0111
Q ss_pred CCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCC-------CCC--CCceeEE-EEeCCEEEEEcCc
Q 008089 191 RDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGM-------VLS--PRAGHST-VAFGKNLFVFGGF 260 (578)
Q Consensus 191 R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~-------~p~--~R~~hs~-v~~~~~iyV~GG~ 260 (578)
.....+...++.+++.|+.++ .+.+||+.+..-........ .+. .....++ ..-++..+++++.
T Consensus 745 ~v~~~~~sp~~~~l~s~s~dg------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~ 818 (1249)
T 3sfz_A 745 SVNHCRFSPDDELLASCSADG------TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK 818 (1249)
T ss_dssp CEEEEEECSSTTEEEEEESSS------EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET
T ss_pred CEEEEEEecCCCEEEEEECCC------eEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC
Confidence 111111222566777776543 37788876654322211000 000 0011111 1223445555441
Q ss_pred cCCCCccCcEEEEECCCCcEEEEEe
Q 008089 261 TDSQNLYDDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 261 ~~~~~~~~dv~~ydi~t~~W~~l~~ 285 (578)
+.+.+||+.+........
T Consensus 819 -------~~v~~~d~~~~~~~~~~~ 836 (1249)
T 3sfz_A 819 -------NKVLLFDIHTSGLLAEIH 836 (1249)
T ss_dssp -------TEEEEEETTTCCEEEEEE
T ss_pred -------CcEEEEEecCCCceeEEc
Confidence 358899999887655443
No 157
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=89.36 E-value=16 Score=35.06 Aligned_cols=217 Identities=12% Similarity=0.081 Sum_probs=98.4
Q ss_pred EEEEcCCCEEEEEcCCCC-CCCCcccEEEEEcCCCcEEEeeecCCCC-CCCcceeEEEE-C-CEEEEEcccCCCCCCCcE
Q 008089 37 CNAIKGGRFLYVFGGYGK-DNCQTNQVHVFDTVNQTWSQPVIKGSPP-TPRDSHSCTTV-G-ENLYVFGGTDGMNPLRDL 112 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~-~~~~~~~v~~yD~~t~~W~~l~~~g~~P-~~R~~hs~~~~-~-~kIYv~GG~~~~~~~~~v 112 (578)
.+++..++.||+..+... .....+.+++||+.++++..+.. +... ....-++++.. + +++|+.... +.+
T Consensus 22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~i~~~~~~g~l~v~~~~------~~l 94 (314)
T 1pjx_A 22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-PEVNGYGGIPAGCQCDRDANQLFVADMR------LGL 94 (314)
T ss_dssp EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-CEETTEECCEEEEEECSSSSEEEEEETT------TEE
T ss_pred CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-cccCCCCCCCceEEEecCCCcEEEEECC------CCE
Confidence 344433445887711000 00022469999998888876542 0000 01112233332 4 788887642 369
Q ss_pred EEEECCCCeEEec-ccCCCCCCCCcccEEEEE-CCEEEEEccCCCC----CCCCCceeeceEEEEEcCcceEEEeccCCC
Q 008089 113 HILDTSSHTWISP-SVRGEGPEAREGHSAALV-GKRLFIFGGCGKS----SNTNDEVYYNDLYILNTETFVWKRATTSGN 186 (578)
Q Consensus 113 ~~yD~~t~~W~~l-~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~----~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~ 186 (578)
++||+. .+...+ ...........-+.++.. ++++|+....... ...........+++||+. .+...+.....
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~ 172 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ 172 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCC
Confidence 999998 776554 211111111112233333 4678876531100 000011123578999987 55554421101
Q ss_pred CCCCCCceeEEEe-----CC-EEEEEecCCCCCcccCceEEEECC-CCceEEecCCCCCCCC--CceeEEEEe-CCEEEE
Q 008089 187 PPSARDSHTCSSW-----KN-KIIVIGGEDGHDYYLSDVHILDTD-TLTWKELNTSGMVLSP--RAGHSTVAF-GKNLFV 256 (578)
Q Consensus 187 ~p~~R~~h~~~~~-----~~-~lyV~GG~~~~~~~~~di~~yD~~-t~~W~~v~~~g~~p~~--R~~hs~v~~-~~~iyV 256 (578)
....++.. ++ .||+.... .+.+++||+. +..+.........+.. ..-..++.- ++.+||
T Consensus 173 -----~~~~i~~~~~~d~dg~~l~v~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v 241 (314)
T 1pjx_A 173 -----FPNGIAVRHMNDGRPYQLIVAETP------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLV 241 (314)
T ss_dssp -----SEEEEEEEECTTSCEEEEEEEETT------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEE
T ss_pred -----CcceEEEecccCCCCCEEEEEECC------CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEE
Confidence 11223333 33 46665432 2458888875 3433221110001111 111223332 466777
Q ss_pred EcCccCCCCccCcEEEEECCCCc
Q 008089 257 FGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 257 ~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
.... .+.|.+||+.++.
T Consensus 242 ~~~~------~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 242 ANWG------SSHIEVFGPDGGQ 258 (314)
T ss_dssp EEET------TTEEEEECTTCBS
T ss_pred EEcC------CCEEEEEcCCCCc
Confidence 6422 1358999988544
No 158
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=89.31 E-value=14 Score=34.37 Aligned_cols=146 Identities=14% Similarity=0.157 Sum_probs=78.0
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCC--CcEEEeeec---CCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEE
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVN--QTWSQPVIK---GSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHIL 115 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t--~~W~~l~~~---g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~y 115 (578)
++.+|+|=| +.+|+++... .......+. ..+|.. .. ++... ++++|+|-| +..|+|
T Consensus 16 ~g~~yfFkg--------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~-ID-Aa~~~~~~~~~yfFkG-------~~yw~~ 78 (195)
T 1itv_A 16 GNQLYLFKD--------GKYWRFSEGRGSRPQGPFLIADKWPALPRK-LD-SVFEEPLSKKLFFFSG-------RQVWVY 78 (195)
T ss_dssp TTEEEEEET--------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS-CS-EEEECTTTCCEEEEET-------TEEEEE
T ss_pred CCEEEEEEC--------CEEEEEECCccccCCCcEEhhhccCCCCCC-cc-EEEEECCCCeEEEEeC-------CEEEEE
Confidence 446999876 4588887754 223221111 234432 22 22222 678999987 468999
Q ss_pred ECCCCeE-EecccCCCCCCC--CcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEE-----EeccCCCC
Q 008089 116 DTSSHTW-ISPSVRGEGPEA--REGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-----RATTSGNP 187 (578)
Q Consensus 116 D~~t~~W-~~l~~~g~~P~~--R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~-----~~~~~g~~ 187 (578)
+..+..- ..+... .+|.. ....+....++++|+|-| +..|+||..+.+-. .+.. .-+
T Consensus 79 ~~~~~~~Pk~i~~~-G~p~~~~~iDAA~~~~~g~~yfFkg-------------~~ywr~d~~~~~~~~gyPr~i~~-~w~ 143 (195)
T 1itv_A 79 TGASVLGPRRLDKL-GLGADVAQVTGALRSGRGKMLLFSG-------------RRLWRFDVKAQMVDPRSASEVDR-MFP 143 (195)
T ss_dssp ETTEEEEEEEGGGG-TCCTTCCCCCEEEECSTTEEEEEET-------------TEEEEEETTTTEECGGGCEEHHH-HST
T ss_pred cCCccCCCEEeeec-ccCCCccceeEEEEcCCCeEEEEeC-------------CEEEEEeCCcccccCCCccChhh-cCC
Confidence 8653221 112111 13332 222233322579999988 45789998765321 1110 001
Q ss_pred CCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCc
Q 008089 188 PSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT 228 (578)
Q Consensus 188 p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~ 228 (578)
..+..-.++...++.+|+|-|. ..|.||..+..
T Consensus 144 Gvp~~idaa~~~~g~~Yffkg~--------~y~~~~~~~~~ 176 (195)
T 1itv_A 144 GVPLDTHDVFQFREKAYFCQDR--------FYWRVSSRSEL 176 (195)
T ss_dssp TSCSSCSEEEEETTEEEEEETT--------EEEEEECCTTC
T ss_pred CCCCCCCEEEEeCCeEEEEeCC--------EEEEEECCccE
Confidence 1122334555567999999763 47788876654
No 159
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=89.27 E-value=5.6 Score=38.56 Aligned_cols=149 Identities=18% Similarity=0.167 Sum_probs=71.7
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEE-ECCEEEEEccCCCCCCCCCceeeceEEEEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd 172 (578)
++++++.|+.++ .+..++............ ... ....... ..+.+++.|+.. ..+.++|
T Consensus 97 dg~~l~s~~~d~-----~i~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~l~s~s~d-----------~~~~~~d 156 (340)
T 4aow_A 97 DGQFALSGSWDG-----TLRLWDLTTGTTTRRFVG---HTK-DVLSVAFSSDNRQIVSGSRD-----------KTIKLWN 156 (340)
T ss_dssp TSSEEEEEETTS-----EEEEEETTTTEEEEEEEC---CSS-CEEEEEECTTSSCEEEEETT-----------SCEEEEC
T ss_pred CCCEEEEEcccc-----cceEEeecccceeeeecC---CCC-ceeEEEEeecCccceeecCC-----------CeEEEEE
Confidence 566777777654 477788777665432211 111 1111111 134455666521 2355666
Q ss_pred cCcceEEEeccCCCCCCCCCceeEEEe----CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEE
Q 008089 173 TETFVWKRATTSGNPPSARDSHTCSSW----KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV 248 (578)
Q Consensus 173 ~~t~~W~~~~~~g~~p~~R~~h~~~~~----~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v 248 (578)
.....-......+ .......+.+ .+.+++.||.+. .+.+||+.+........ .....-.+++
T Consensus 157 ~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~s~~~d~------~i~i~d~~~~~~~~~~~----~h~~~v~~~~ 222 (340)
T 4aow_A 157 TLGVCKYTVQDES----HSEWVSCVRFSPNSSNPIIVSCGWDK------LVKVWNLANCKLKTNHI----GHTGYLNTVT 222 (340)
T ss_dssp TTSCEEEEECSSS----CSSCEEEEEECSCSSSCEEEEEETTS------CEEEEETTTTEEEEEEC----CCSSCEEEEE
T ss_pred eCCCceEEEEecc----ccCcccceEEccCCCCcEEEEEcCCC------EEEEEECCCCceeeEec----CCCCcEEEEE
Confidence 6544333222111 1111122222 234666666543 37888988765443322 1111112222
Q ss_pred Ee-CCEEEEEcCccCCCCccCcEEEEECCCCcEEE
Q 008089 249 AF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (578)
Q Consensus 249 ~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~ 282 (578)
.. ++++++.|+.+. .+.+||+.+..-..
T Consensus 223 ~s~~~~~l~s~s~Dg------~i~iwd~~~~~~~~ 251 (340)
T 4aow_A 223 VSPDGSLCASGGKDG------QAMLWDLNEGKHLY 251 (340)
T ss_dssp ECTTSSEEEEEETTC------EEEEEETTTTEEEE
T ss_pred ECCCCCEEEEEeCCC------eEEEEEeccCceee
Confidence 22 456777777542 48899998875433
No 160
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=89.26 E-value=11 Score=37.30 Aligned_cols=202 Identities=14% Similarity=0.120 Sum_probs=94.6
Q ss_pred ceEEEEEcC-CCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeee------c-CCCC-CCCcceeEEEE---CCEEEEEc
Q 008089 34 GHTCNAIKG-GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVI------K-GSPP-TPRDSHSCTTV---GENLYVFG 101 (578)
Q Consensus 34 ghs~v~v~~-g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~------~-g~~P-~~R~~hs~~~~---~~kIYv~G 101 (578)
.-.++.+.. ++.+++.|+.+ ..+.+||..+........ . ...+ .....-.++.. ++.+++.|
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSD------GVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETT------SCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred cEEEEEEecCCCCEEEEEcCC------CeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 334555543 34466667643 358888887654321110 0 0000 11112222222 44577777
Q ss_pred ccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE----CCEEEEEccCCCCCCCCCceeeceEEEEEcCcce
Q 008089 102 GTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV----GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV 177 (578)
Q Consensus 102 G~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~----~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~ 177 (578)
+.+ ..+.+||+.+.+....-. .+.. ....... ++.+++.|+. ...+.+||+.+..
T Consensus 119 ~~d-----~~i~iwd~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~d~~~~~ 177 (408)
T 4a11_B 119 SFD-----KTLKVWDTNTLQTADVFN---FEET--VYSHHMSPVSTKHCLVAVGTR-----------GPKVQLCDLKSGS 177 (408)
T ss_dssp ETT-----SEEEEEETTTTEEEEEEE---CSSC--EEEEEECSSCSSCCEEEEEES-----------SSSEEEEESSSSC
T ss_pred eCC-----CeEEEeeCCCCccceecc---CCCc--eeeeEeecCCCCCcEEEEEcC-----------CCeEEEEeCCCcc
Confidence 654 358899998876543221 1111 1122222 2346666663 2457888887654
Q ss_pred EEEeccCCCCCCCCCceeEEEe--CC-EEEEEecCCCCCcccCceEEEECCCCc--eEEecCCC-----CC----CCCCc
Q 008089 178 WKRATTSGNPPSARDSHTCSSW--KN-KIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSG-----MV----LSPRA 243 (578)
Q Consensus 178 W~~~~~~g~~p~~R~~h~~~~~--~~-~lyV~GG~~~~~~~~~di~~yD~~t~~--W~~v~~~g-----~~----p~~R~ 243 (578)
....- ........+..+ ++ .+++.|+.++ .+.+||+.+.. ...+.... .. .....
T Consensus 178 ~~~~~-----~~~~~~v~~~~~~~~~~~ll~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (408)
T 4a11_B 178 CSHIL-----QGHRQEILAVSWSPRYDYILATASADS------RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG 246 (408)
T ss_dssp CCEEE-----CCCCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSS
T ss_pred eeeee-----cCCCCcEEEEEECCCCCcEEEEEcCCC------cEEEEECCCCCcccccccccccccceeeccccccccC
Confidence 32211 001111222222 33 3777777553 37888886542 22221100 00 01111
Q ss_pred -eeEEEEe-CCEEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 244 -GHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 244 -~hs~v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
-.++... +++.++.|+.+. .+.+||+.+..
T Consensus 247 ~v~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~~ 278 (408)
T 4a11_B 247 KVNGLCFTSDGLHLLTVGTDN------RMRLWNSSNGE 278 (408)
T ss_dssp CEEEEEECTTSSEEEEEETTS------CEEEEETTTCC
T ss_pred ceeEEEEcCCCCEEEEecCCC------eEEEEECCCCc
Confidence 1122222 455666676532 48999998865
No 161
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=89.05 E-value=14 Score=35.97 Aligned_cols=239 Identities=12% Similarity=0.023 Sum_probs=110.2
Q ss_pred cceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCCc
Q 008089 33 WGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRD 111 (578)
Q Consensus 33 ~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~ 111 (578)
+....+...+++.||+.+-. .+.+++|++ +.....+.. +.. .-++.+.. ++++|+.... ...
T Consensus 46 ~~egp~~~~~g~~l~~~d~~------~~~i~~~~~-~g~~~~~~~----~~~-~~~gl~~d~dG~l~v~~~~-----~~~ 108 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLV------GRRVLGWRE-DGTVDVLLD----ATA-FTNGNAVDAQQRLVHCEHG-----RRA 108 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETT------TTEEEEEET-TSCEEEEEE----SCS-CEEEEEECTTSCEEEEETT-----TTE
T ss_pred CccCCeEeCCCCEEEEEECC------CCEEEEEeC-CCCEEEEeC----CCC-ccceeeECCCCCEEEEECC-----CCE
Confidence 34455566667778777542 245899998 454444321 111 11222222 5678776321 135
Q ss_pred EEEEECCCCeEEecccC-CCCCCCCcccEEEEECCEEEEE----ccCCCC--CCCCCceeeceEEEEEcCcceEEEeccC
Q 008089 112 LHILDTSSHTWISPSVR-GEGPEAREGHSAALVGKRLFIF----GGCGKS--SNTNDEVYYNDLYILNTETFVWKRATTS 184 (578)
Q Consensus 112 v~~yD~~t~~W~~l~~~-g~~P~~R~~hs~~~~~~~lyvf----GG~~~~--~~~~~~~~~ndv~~yd~~t~~W~~~~~~ 184 (578)
+++||+. .+.+.+... ...+..+-...++.-+++||+. |-.... .....+.....+++||+.+.++..+. .
T Consensus 109 v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~ 186 (305)
T 3dr2_A 109 ITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D 186 (305)
T ss_dssp EEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E
T ss_pred EEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c
Confidence 8888876 555443211 0111111111222225678874 331100 00001112357999999887776653 1
Q ss_pred CCCCCCCCceeEEEe-CC-EEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccC
Q 008089 185 GNPPSARDSHTCSSW-KN-KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTD 262 (578)
Q Consensus 185 g~~p~~R~~h~~~~~-~~-~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~ 262 (578)
...| ..++.. ++ .||+....... ...+.|++||+..............+...-..-++--+++||+-.+
T Consensus 187 ~~~p-----~gl~~spdg~~lyv~~~~~~~-~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~--- 257 (305)
T 3dr2_A 187 LDHP-----NGLAFSPDEQTLYVSQTPEQG-HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSG--- 257 (305)
T ss_dssp ESSE-----EEEEECTTSSEEEEEECCC----CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCS---
T ss_pred CCCC-----cceEEcCCCCEEEEEecCCcC-CCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecC---
Confidence 1111 223322 33 57776432110 0124688998765432211110001111111112223456766542
Q ss_pred CCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEE
Q 008089 263 SQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFI 312 (578)
Q Consensus 263 ~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~ 312 (578)
+.|++||++......+... . .....++. ..++.|||.
T Consensus 258 -----~gv~~~~~~g~~~~~~~~~----~---~~~~~~f~-~d~~~L~it 294 (305)
T 3dr2_A 258 -----TGVCVFDSDGQLLGHIPTP----G---TASNCTFD-QAQQRLFIT 294 (305)
T ss_dssp -----SEEEEECTTSCEEEEEECS----S---CCCEEEEC-TTSCEEEEE
T ss_pred -----CcEEEECCCCCEEEEEECC----C---ceeEEEEe-CCCCEEEEE
Confidence 2499999977666655432 1 12223333 345667764
No 162
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=89.04 E-value=20 Score=35.94 Aligned_cols=185 Identities=15% Similarity=0.136 Sum_probs=86.9
Q ss_pred EEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCccc-EEEEE---CCEEEEEccCCCCCCCCCceeeceEEEE
Q 008089 96 NLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGH-SAALV---GKRLFIFGGCGKSSNTNDEVYYNDLYIL 171 (578)
Q Consensus 96 kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h-s~~~~---~~~lyvfGG~~~~~~~~~~~~~ndv~~y 171 (578)
..++.|+.++ .+.+||+.+.+-...- ....+...... ..+.+ ++.+++.|+.+ ..+.++
T Consensus 171 ~~l~s~s~D~-----~i~~wd~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D-----------~~v~~w 233 (380)
T 3iz6_a 171 TRLITGSGDQ-----TCVLWDVTTGQRISIF-GSEFPSGHTADVLSLSINSLNANMFISGSCD-----------TTVRLW 233 (380)
T ss_dssp SCEEEECTTS-----CEEEECTTTCCEEEEE-CCCSSSSCCSCEEEEEECSSSCCEEEEEETT-----------SCEEEE
T ss_pred CEEEEECCCC-----cEEEEEcCCCcEEEEe-ecccCCCCccCeEEEEeecCCCCEEEEEECC-----------CeEEEE
Confidence 4455666543 4888888877643321 01112111111 11222 45788888842 346677
Q ss_pred EcCcc--eEEEeccCCCCCCCCCceeEEE-eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCC-C---CCCCce
Q 008089 172 NTETF--VWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGM-V---LSPRAG 244 (578)
Q Consensus 172 d~~t~--~W~~~~~~g~~p~~R~~h~~~~-~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~-~---p~~R~~ 244 (578)
|+... ....+.. ..... .+++. .++..++.|+.++. +.+||+.+..-...-.... . ..+...
T Consensus 234 d~~~~~~~~~~~~~----h~~~v-~~v~~~p~~~~l~s~s~D~~------i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~ 302 (380)
T 3iz6_a 234 DLRITSRAVRTYHG----HEGDI-NSVKFFPDGQRFGTGSDDGT------CRLFDMRTGHQLQVYNREPDRNDNELPIVT 302 (380)
T ss_dssp ETTTTCCCCEEECC----CSSCC-CEEEECTTSSEEEEECSSSC------EEEEETTTTEEEEEECCCCSSSCCSSCSCS
T ss_pred ECCCCCcceEEECC----cCCCe-EEEEEecCCCeEEEEcCCCe------EEEEECCCCcEEEEecccccccccccCceE
Confidence 77532 1122211 00111 12222 26677888876543 7889988765433322100 0 001111
Q ss_pred eEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEE-eCCCCCCCceeeeEeeeeccCCCEEEEEccccCC
Q 008089 245 HSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI-TTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (578)
Q Consensus 245 hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~-~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (578)
..+...++++++.|+.+ ..+++||..+..-.... ...... ........+ ..++.+++.||.+..
T Consensus 303 ~~~~s~~g~~l~~g~~d------g~i~vwd~~~~~~~~~~~~~~~~h--~~~v~~l~~--s~dg~~l~sgs~D~~ 367 (380)
T 3iz6_a 303 SVAFSISGRLLFAGYSN------GDCYVWDTLLAEMVLNLGTLQNSH--EGRISCLGL--SSDGSALCTGSWDKN 367 (380)
T ss_dssp EEEECSSSSEEEEECTT------SCEEEEETTTCCEEEEECCSCSSC--CCCCCEEEE--CSSSSEEEEECTTSC
T ss_pred EEEECCCCCEEEEEECC------CCEEEEECCCCceEEEEecccCCC--CCceEEEEE--CCCCCEEEEeeCCCC
Confidence 12223356677777653 34899998877643322 110111 111121222 356677788887654
No 163
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=88.99 E-value=32 Score=38.26 Aligned_cols=179 Identities=15% Similarity=0.111 Sum_probs=93.1
Q ss_pred cEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEeccc-CCCCCCCCcccE
Q 008089 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSV-RGEGPEAREGHS 139 (578)
Q Consensus 61 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~-~g~~P~~R~~hs 139 (578)
-+++||..+.++.... ... ...-.+....++.|||... +.+++||..+.++..... ...++.. .-.+
T Consensus 83 Gl~~yd~~~~~f~~~~--~~~--~~~i~~i~~~~g~lWigt~-------~Gl~~~~~~~~~~~~~~~~~~~l~~~-~i~~ 150 (758)
T 3ott_A 83 GILVYNYRADRYEQPE--TDF--PTDVRTMALQGDTLWLGAL-------NGLYTYQLQSRKLTSFDTRRNGLPNN-TIYS 150 (758)
T ss_dssp EEEEEETTTTEECCCS--CCC--CSCEEEEEEETTEEEEEET-------TEEEEEETTTCCEEEECHHHHCCSCS-CEEE
T ss_pred CeEEEeCCCCEEECcc--cCC--CceEEEEEecCCcEEEEcC-------CcceeEeCCCCeEEEeccCCCCcCCC-eEEE
Confidence 4899999988776421 111 1111223334778887531 258999999888876521 1112211 1112
Q ss_pred EEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCC-CCCCceeEEEe--CCEEEEEecCCCCCcc
Q 008089 140 AALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP-SARDSHTCSSW--KNKIIVIGGEDGHDYY 215 (578)
Q Consensus 140 ~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p-~~R~~h~~~~~--~~~lyV~GG~~~~~~~ 215 (578)
++.. ++.|+|. - .+.+++||+.+..+.......... ....-.++... ++.|+|- - .
T Consensus 151 i~~d~~g~lWig-t------------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWig-t-~----- 210 (758)
T 3ott_A 151 IIRTKDNQIYVG-T------------YNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIG-T-E----- 210 (758)
T ss_dssp EEECTTCCEEEE-E------------TTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEE-E-E-----
T ss_pred EEEcCCCCEEEE-e------------CCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEE-E-C-----
Confidence 2222 4677773 2 135889999988887654211100 11111223332 2456762 1 1
Q ss_pred cCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEEEEECCCCcEEEEE
Q 008089 216 LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (578)
Q Consensus 216 ~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~ 284 (578)
..+++||+.+.++..... .+. ..-.+++.- ++.|+| |-. +.+++||..+..+..+.
T Consensus 211 -~Gl~~~~~~~~~~~~~~~---l~~-~~i~~i~~d~~g~lWi-gT~-------~Gl~~~~~~~~~~~~~~ 267 (758)
T 3ott_A 211 -GYLFQYFPSTGQIKQTEA---FHN-NSIKSLALDGNGDLLA-GTD-------NGLYVYHNDTTPLQHII 267 (758)
T ss_dssp -EEEEEEETTTTEEEEEEE---EEE-EEEEEEEECTTCCEEE-EET-------TEEEEECCTTSCCEEEC
T ss_pred -CCCeEEcCCCCeEEeccC---CCC-CeEEEEEEcCCCCEEE-EeC-------CceeEEecCCCcEEEEE
Confidence 238899999888876532 111 111122222 345655 321 23888999888877664
No 164
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=88.99 E-value=1.6 Score=43.55 Aligned_cols=150 Identities=9% Similarity=0.110 Sum_probs=68.1
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCccc-EEEEE-CCEEEEEccCCCCCCCCCceeeceEEEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGH-SAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYIL 171 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h-s~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~y 171 (578)
++++++.|+.++ .+.+||+.+..|..+... ......- +++.. ++++++.|+.+ ..+.+|
T Consensus 22 ~g~~l~~~~~d~-----~i~iw~~~~~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~s~d-----------~~v~vw 82 (377)
T 3dwl_C 22 QRTEFVTTTATN-----QVELYEQDGNGWKHARTF---SDHDKIVTCVDWAPKSNRIVTCSQD-----------RNAYVY 82 (377)
T ss_dssp SSSEEECCCSSS-----CBCEEEEETTEEEECCCB---CCCSSCEEEEEECTTTCCEEEEETT-----------SSEEEC
T ss_pred CCCEEEEecCCC-----EEEEEEccCCceEEEEEE---ecCCceEEEEEEeCCCCEEEEEeCC-----------CeEEEE
Confidence 556677776543 477788888877665422 1111111 22222 35666777631 347777
Q ss_pred EcCcce-EEEeccCCCCCCCCCceeEEEe--CCEEEEEecCCCCCcccCceEEEECCCCc-eEEecCCCCCCCCCceeEE
Q 008089 172 NTETFV-WKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLT-WKELNTSGMVLSPRAGHST 247 (578)
Q Consensus 172 d~~t~~-W~~~~~~g~~p~~R~~h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t~~-W~~v~~~g~~p~~R~~hs~ 247 (578)
|+.+.. |...... ........++.+ ++++++.|+.++ .+.+||+.+.. |..+.... .+....-.++
T Consensus 83 d~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~-~~h~~~v~~~ 152 (377)
T 3dwl_C 83 EKRPDGTWKQTLVL---LRLNRAATFVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSKHLK-RPLRSTILSL 152 (377)
T ss_dssp ------CCCCEEEC---CCCSSCEEEEECCTTSSCCEEEESSS------CEEECCC-----CCCCEEEC-SSCCSCEEEE
T ss_pred EcCCCCceeeeeEe---cccCCceEEEEECCCCCEEEEEecCC------eEEEEEECCcccceeeeEee-cccCCCeEEE
Confidence 877665 4333211 011111222222 566777777543 37778876654 32222100 1111222223
Q ss_pred EEe-CCEEEEEcCccCCCCccCcEEEEECCCC
Q 008089 248 VAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (578)
Q Consensus 248 v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~ 278 (578)
... ++++++.|+.+ ..+.+||+.+.
T Consensus 153 ~~~~~~~~l~~~~~d------~~i~iwd~~~~ 178 (377)
T 3dwl_C 153 DWHPNNVLLAAGCAD------RKAYVLSAYVR 178 (377)
T ss_dssp EECTTSSEEEEEESS------SCEEEEEECCS
T ss_pred EEcCCCCEEEEEeCC------CEEEEEEEEec
Confidence 333 45677777754 24888888643
No 165
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=88.89 E-value=16 Score=34.60 Aligned_cols=70 Identities=13% Similarity=0.023 Sum_probs=37.7
Q ss_pred eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCC
Q 008089 199 WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (578)
Q Consensus 199 ~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~ 278 (578)
.++. ++.|+.+ ..+.+||+.+..-...-. .....-.++....+..++.|+.+ ..+.+||+.+.
T Consensus 194 ~~~~-~~~~~~d------g~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~l~~~~~d------g~v~iwd~~~~ 256 (313)
T 3odt_A 194 DDGH-FISCSND------GLIKLVDMHTGDVLRTYE----GHESFVYCIKLLPNGDIVSCGED------RTVRIWSKENG 256 (313)
T ss_dssp ETTE-EEEEETT------SEEEEEETTTCCEEEEEE----CCSSCEEEEEECTTSCEEEEETT------SEEEEECTTTC
T ss_pred CCCe-EEEccCC------CeEEEEECCchhhhhhhh----cCCceEEEEEEecCCCEEEEecC------CEEEEEECCCC
Confidence 3666 6666644 348889987654332211 01111223333333245566643 34899999988
Q ss_pred cEEEEEe
Q 008089 279 LWTKVIT 285 (578)
Q Consensus 279 ~W~~l~~ 285 (578)
.......
T Consensus 257 ~~~~~~~ 263 (313)
T 3odt_A 257 SLKQVIT 263 (313)
T ss_dssp CEEEEEE
T ss_pred ceeEEEe
Confidence 7655443
No 166
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=88.63 E-value=5.6 Score=39.17 Aligned_cols=169 Identities=12% Similarity=0.107 Sum_probs=75.0
Q ss_pred eEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcC-CCcEEEeeecCCCCCCCcceeEEEECC-EEEEEcccCCCCCCCcE
Q 008089 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTV-NQTWSQPVIKGSPPTPRDSHSCTTVGE-NLYVFGGTDGMNPLRDL 112 (578)
Q Consensus 35 hs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~-t~~W~~l~~~g~~P~~R~~hs~~~~~~-kIYv~GG~~~~~~~~~v 112 (578)
|..+...+++ +|+.+.. .+.+++||+. +++...+......+.....+.+..-++ .+|+.+..+ +.+
T Consensus 144 ~~~~~spdg~-l~v~~~~------~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~-----~~v 211 (347)
T 3hfq_A 144 HYTDLTPDNR-LAVIDLG------SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS-----SQI 211 (347)
T ss_dssp EEEEECTTSC-EEEEETT------TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT-----TEE
T ss_pred eEEEECCCCc-EEEEeCC------CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC-----CEE
Confidence 3344445565 7765432 2468899987 555554321111111111122222244 477765432 345
Q ss_pred EEEE--CCCCeEEecccCCCCCCC----CcccEEEEE-CC-EEEEEccCCCCCCCCCceeeceEEEEEcC-cceEEEecc
Q 008089 113 HILD--TSSHTWISPSVRGEGPEA----REGHSAALV-GK-RLFIFGGCGKSSNTNDEVYYNDLYILNTE-TFVWKRATT 183 (578)
Q Consensus 113 ~~yD--~~t~~W~~l~~~g~~P~~----R~~hs~~~~-~~-~lyvfGG~~~~~~~~~~~~~ndv~~yd~~-t~~W~~~~~ 183 (578)
.+|+ ..+.++..+......+.. ..-..+++. ++ .||+.+.. .+.+.+|++. ...++.+..
T Consensus 212 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~-----------~~~v~v~~~~~~g~~~~~~~ 280 (347)
T 3hfq_A 212 ASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG-----------YNTLAVFAVTADGHLTLIQQ 280 (347)
T ss_dssp EEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET-----------TTEEEEEEECGGGCEEEEEE
T ss_pred EEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC-----------CCEEEEEEECCCCcEEEeEE
Confidence 5555 445776543322122221 112223332 33 57776541 2457778875 234444332
Q ss_pred CCCCCCCCCceeEEE-eCC-EEEEEecCCCCCcccCceEEE--ECCCCceEEecC
Q 008089 184 SGNPPSARDSHTCSS-WKN-KIIVIGGEDGHDYYLSDVHIL--DTDTLTWKELNT 234 (578)
Q Consensus 184 ~g~~p~~R~~h~~~~-~~~-~lyV~GG~~~~~~~~~di~~y--D~~t~~W~~v~~ 234 (578)
.... ...-..++. -++ .||+.+... +.+.+| |+++.+...+..
T Consensus 281 ~~~~--~~~~~~~~~spdg~~l~v~~~~~------~~v~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 281 ISTE--GDFPRDFDLDPTEAFVVVVNQNT------DNATLYARDLTSGKLSLLQK 327 (347)
T ss_dssp EECS--SSCCCEEEECTTSSEEEEEETTT------TEEEEEEECTTTCCEEEEEE
T ss_pred EecC--CCCcCeEEECCCCCEEEEEEcCC------CcEEEEEEeCCCCeEEeccc
Confidence 1010 111112222 244 465544322 224455 888888776654
No 167
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=88.43 E-value=28 Score=38.21 Aligned_cols=148 Identities=11% Similarity=0.032 Sum_probs=69.3
Q ss_pred ceEEEEEcCc-ceEEEeccCCCCCCCCC-ceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCC-CCC
Q 008089 166 NDLYILNTET-FVWKRATTSGNPPSARD-SHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVL-SPR 242 (578)
Q Consensus 166 ndv~~yd~~t-~~W~~~~~~g~~p~~R~-~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p-~~R 242 (578)
..++++|+.+ .+-..+... . ..... ..... -+++.++++..+... ...+++++|+.+.....+....... ...
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~~-pDg~~l~~~~~~~~~-~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 338 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLG-K-EQDIYLARVNW-RDPQHLSFQRQSRDQ-KKLDLVEVTLASNQQRVLAHETSPTWVPL 338 (741)
T ss_dssp EEEEEECSSTTCCCEEECCC-S-CSSEEEEEEEE-EETTEEEEEEEETTS-SEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred eEEEEEECCCCCceEEecCC-C-CcceEEEEEEe-CCCCEEEEEEecccC-CeEEEEEEECCCCceEEEEEcCCCCcCCc
Confidence 3788889887 765554321 0 01111 11222 444444444322111 2457999999988877664311100 001
Q ss_pred ceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCCCCcc
Q 008089 243 AGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEAL 322 (578)
Q Consensus 243 ~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~ 322 (578)
....+..-++++++.++... ...||.+|.... +..+... .............++.|++.+..+. ...
T Consensus 339 ~~~~~~spdg~~~~~~~~~g----~~~l~~~~~~~~-~~~l~~~------~~~v~~~~~~s~dg~~l~~~~~~~~--~~~ 405 (741)
T 2ecf_A 339 HNSLRFLDDGSILWSSERTG----FQHLYRIDSKGK-AAALTHG------NWSVDELLAVDEKAGLAYFRAGIES--ARE 405 (741)
T ss_dssp CSCCEECTTSCEEEEECTTS----SCEEEEECSSSC-EEESCCS------SSCEEEEEEEETTTTEEEEEECSSC--TTC
T ss_pred CCceEECCCCeEEEEecCCC----ccEEEEEcCCCC-eeeeeec------ceEEEeEeEEeCCCCEEEEEEeCCC--Cce
Confidence 11122333556666654322 356899998766 5444221 1112221111244556666654322 112
Q ss_pred CcEEEEec
Q 008089 323 DDMYYLYT 330 (578)
Q Consensus 323 ~d~~~l~~ 330 (578)
..+|.+++
T Consensus 406 ~~l~~~~~ 413 (741)
T 2ecf_A 406 SQIYAVPL 413 (741)
T ss_dssp BEEEEEET
T ss_pred EEEEEEEc
Confidence 34777664
No 168
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=88.42 E-value=27 Score=38.59 Aligned_cols=194 Identities=11% Similarity=0.059 Sum_probs=99.7
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCC--------CCCCcEEEEECCCCeEEecccCCCC
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGM--------NPLRDLHILDTSSHTWISPSVRGEG 131 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~--------~~~~~v~~yD~~t~~W~~l~~~g~~ 131 (578)
..++++|+.+++...... +..+....+-. +++-++++-.+.. .....+|++++.+..=....+. ..
T Consensus 155 ~~i~v~dl~tg~~~~~~~----~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~-~~ 228 (693)
T 3iuj_A 155 REIHLMDVESKQPLETPL----KDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVF-GA 228 (693)
T ss_dssp EEEEEEETTTCSEEEEEE----EEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEE-SC
T ss_pred EEEEEEECCCCCCCcccc----CCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEE-ec
Confidence 469999999998765421 11112222233 5543333333221 3346799998876542110000 11
Q ss_pred CC--CCcccEEEE-ECCE-EEEEccCCCCCCCCCceeeceEEEEEcCcc--eEEEeccCCCCCCCCCceeEEEeCCEEEE
Q 008089 132 PE--AREGHSAAL-VGKR-LFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIV 205 (578)
Q Consensus 132 P~--~R~~hs~~~-~~~~-lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~--~W~~~~~~g~~p~~R~~h~~~~~~~~lyV 205 (578)
+. +....+... -+++ |++..... ...+.+|++|+.+. .|..+... ...........++.||+
T Consensus 229 ~~~~~~~~~~~~~SpDg~~l~~~~~~~--------~~~~~i~~~d~~~~~~~~~~l~~~----~~~~~~~~~~~g~~l~~ 296 (693)
T 3iuj_A 229 IPAQHHRYVGATVTEDDRFLLISAANS--------TSGNRLYVKDLSQENAPLLTVQGD----LDADVSLVDNKGSTLYL 296 (693)
T ss_dssp SGGGCCSEEEEEECTTSCEEEEEEESS--------SSCCEEEEEETTSTTCCCEEEECS----SSSCEEEEEEETTEEEE
T ss_pred CCCCCeEEEEEEEcCCCCEEEEEEccC--------CCCcEEEEEECCCCCCceEEEeCC----CCceEEEEeccCCEEEE
Confidence 11 222222222 2344 44433211 11368899998765 67777521 11111223345788998
Q ss_pred EecCCCCCcccCceEEEECCCC---ceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEE
Q 008089 206 IGGEDGHDYYLSDVHILDTDTL---TWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (578)
Q Consensus 206 ~GG~~~~~~~~~di~~yD~~t~---~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~ 282 (578)
....+. ....|+.+|+.+. .|+.+.... .... +....++.|++..-... ...|+++|+.......
T Consensus 297 ~t~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~----~~~~-~~s~~g~~lv~~~~~~g----~~~l~~~d~~g~~~~~ 364 (693)
T 3iuj_A 297 LTNRDA---PNRRLVTVDAANPGPAHWRDLIPER----QQVL-TVHSGSGYLFAEYMVDA----TARVEQFDYEGKRVRE 364 (693)
T ss_dssp EECTTC---TTCEEEEEETTSCCGGGCEEEECCC----SSCE-EEEEETTEEEEEEEETT----EEEEEEECTTSCEEEE
T ss_pred EECCCC---CCCEEEEEeCCCCCccccEEEecCC----CCEE-EEEEECCEEEEEEEECC----eeEEEEEECCCCeeEE
Confidence 876432 2356899998763 488775421 1122 44455677655433221 3468999998765555
Q ss_pred E
Q 008089 283 V 283 (578)
Q Consensus 283 l 283 (578)
+
T Consensus 365 l 365 (693)
T 3iuj_A 365 V 365 (693)
T ss_dssp E
T ss_pred e
Confidence 5
No 169
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=88.31 E-value=17 Score=34.32 Aligned_cols=193 Identities=11% Similarity=0.079 Sum_probs=87.0
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEE
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILD 116 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD 116 (578)
++.+.+++ +++.|+.+ ..+.+||..+......... . .......+..-++++++.|+.++ .+..++
T Consensus 23 ~~~~~~~~-~l~s~~~d------g~v~vw~~~~~~~~~~~~~-~--~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~~ 87 (313)
T 3odt_A 23 DVVAVDDS-KVASVSRD------GTVRLWSKDDQWLGTVVYT-G--QGFLNSVCYDSEKELLLFGGKDT-----MINGVP 87 (313)
T ss_dssp EEEEEETT-EEEEEETT------SEEEEEEESSSEEEEEEEE-C--SSCEEEEEEETTTTEEEEEETTS-----CEEEEE
T ss_pred EEEecCCC-EEEEEEcC------CcEEEEECCCCEEEEEeec-C--CccEEEEEECCCCCEEEEecCCC-----eEEEEE
Confidence 33445565 45566632 3588999877654432211 1 11111122222566777777653 366677
Q ss_pred CCCCe-EEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCcee
Q 008089 117 TSSHT-WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT 195 (578)
Q Consensus 117 ~~t~~-W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~ 195 (578)
+.... ...+. ..............++.+++.|+. ...+.+||........... . . ...+
T Consensus 88 ~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~----~-~-~v~~ 147 (313)
T 3odt_A 88 LFATSGEDPLY---TLIGHQGNVCSLSFQDGVVISGSW-----------DKTAKVWKEGSLVYNLQAH----N-A-SVWD 147 (313)
T ss_dssp TTCCTTSCC-C---EECCCSSCEEEEEEETTEEEEEET-----------TSEEEEEETTEEEEEEECC----S-S-CEEE
T ss_pred eeecCCCCccc---chhhcccCEEEEEecCCEEEEEeC-----------CCCEEEEcCCcEEEecccC----C-C-ceeE
Confidence 65421 10000 011111111222334556666662 2346677733333222211 1 1 1112
Q ss_pred EEE-e-CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEE
Q 008089 196 CSS-W-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMI 273 (578)
Q Consensus 196 ~~~-~-~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~y 273 (578)
+.. . ++.+++.|+.++ .+.+||..... ..+.. .........+..-++. ++.|+.+ ..+.+|
T Consensus 148 ~~~~~~~~~~l~~~~~d~------~i~i~d~~~~~-~~~~~---~~~~~i~~~~~~~~~~-~~~~~~d------g~i~i~ 210 (313)
T 3odt_A 148 AKVVSFSENKFLTASADK------TIKLWQNDKVI-KTFSG---IHNDVVRHLAVVDDGH-FISCSND------GLIKLV 210 (313)
T ss_dssp EEEEETTTTEEEEEETTS------CEEEEETTEEE-EEECS---SCSSCEEEEEEEETTE-EEEEETT------SEEEEE
T ss_pred EEEccCCCCEEEEEECCC------CEEEEecCceE-EEEec---cCcccEEEEEEcCCCe-EEEccCC------CeEEEE
Confidence 222 2 566777776543 37788843221 22211 1112222223334556 6666653 348999
Q ss_pred ECCCCcEE
Q 008089 274 DVDSGLWT 281 (578)
Q Consensus 274 di~t~~W~ 281 (578)
|+.+..-.
T Consensus 211 d~~~~~~~ 218 (313)
T 3odt_A 211 DMHTGDVL 218 (313)
T ss_dssp ETTTCCEE
T ss_pred ECCchhhh
Confidence 99877533
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=88.30 E-value=21 Score=35.13 Aligned_cols=250 Identities=14% Similarity=0.065 Sum_probs=125.8
Q ss_pred EEEEEcCCCEEEEEcCCCCCC------------------CCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCE
Q 008089 36 TCNAIKGGRFLYVFGGYGKDN------------------CQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GEN 96 (578)
Q Consensus 36 s~v~v~~g~~Iyv~GG~~~~~------------------~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~k 96 (578)
.++++..++.||+.+..+..- ...+.++++|+.+++.......+.+. .-++++.. +++
T Consensus 27 ~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~---~p~gia~d~~g~ 103 (329)
T 3fvz_A 27 SGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFY---LPHGLSIDTDGN 103 (329)
T ss_dssp EEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCS---SEEEEEECTTSC
T ss_pred eEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccC---CceEEEECCCCC
Confidence 355565555688876544210 01136999999887765432111111 12233333 567
Q ss_pred EEEEcccCCCCCCCcEEEEECCCCe--EEeccc---CCCCCCCC-cccEEEEE--CCEEEEEccCCCCCCCCCceeeceE
Q 008089 97 LYVFGGTDGMNPLRDLHILDTSSHT--WISPSV---RGEGPEAR-EGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDL 168 (578)
Q Consensus 97 IYv~GG~~~~~~~~~v~~yD~~t~~--W~~l~~---~g~~P~~R-~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv 168 (578)
||+.... .+.+.+||+.... -..+.. .+...... .-..+++. ++.|||..++. .+.+
T Consensus 104 l~v~d~~-----~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~----------~~~I 168 (329)
T 3fvz_A 104 YWVTDVA-----LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC----------NSRI 168 (329)
T ss_dssp EEEEETT-----TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS----------CCEE
T ss_pred EEEEECC-----CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC----------CCeE
Confidence 8887643 2468999986541 111111 01101111 12234444 57899987521 3568
Q ss_pred EEEEcCcceEEEeccCCCC----CCC-CCceeEEEe-C-CEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCC
Q 008089 169 YILNTETFVWKRATTSGNP----PSA-RDSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSP 241 (578)
Q Consensus 169 ~~yd~~t~~W~~~~~~g~~----p~~-R~~h~~~~~-~-~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~ 241 (578)
.+||........+...+.. +.. ..-+.+++- + +.|||....+ +.|.+||+++.+....-.. ....
T Consensus 169 ~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~------~~I~~~~~~~G~~~~~~~~--~~~~ 240 (329)
T 3fvz_A 169 VQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN------GRIQCFKTDTKEFVREIKH--ASFG 240 (329)
T ss_dssp EEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT------TEEEEEETTTCCEEEEECC--TTTT
T ss_pred EEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC------CEEEEEECCCCcEEEEEec--cccC
Confidence 8888665544444322211 111 112334443 4 7999986432 4589999986665443321 1122
Q ss_pred CceeEEEEeCCEEEEEcCccCC-CCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccc
Q 008089 242 RAGHSTVAFGKNLFVFGGFTDS-QNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGC 315 (578)
Q Consensus 242 R~~hs~v~~~~~iyV~GG~~~~-~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~ 315 (578)
..-.+++...+.+|+..|...- ......+++||+.++.....-... +..-....+.++ ..++.|||....
T Consensus 241 ~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~--~~~~~~p~~ia~--~~dG~lyvad~~ 311 (329)
T 3fvz_A 241 RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV--RKHFDMPHDIVA--SEDGTVYIGDAH 311 (329)
T ss_dssp TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS--SSCCSSEEEEEE--CTTSEEEEEESS
T ss_pred CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC--CCccCCeeEEEE--CCCCCEEEEECC
Confidence 2222344445777777664321 112357999999888765543211 111112233333 345688887644
No 171
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=88.30 E-value=12 Score=37.39 Aligned_cols=151 Identities=9% Similarity=0.073 Sum_probs=72.9
Q ss_pred CEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCC---CCcccEEEEEC--CEEEEEccCCCCCCCCCceeeceEE
Q 008089 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPE---AREGHSAALVG--KRLFIFGGCGKSSNTNDEVYYNDLY 169 (578)
Q Consensus 95 ~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~---~R~~hs~~~~~--~~lyvfGG~~~~~~~~~~~~~ndv~ 169 (578)
+.+++.|+.++ .+.+||+.+.+....-. ..... ...-.+++... ..+++.|+... ....+.
T Consensus 178 ~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--------~~~~i~ 243 (416)
T 2pm9_A 178 AHVFASAGSSN-----FASIWDLKAKKEVIHLS-YTSPNSGIKQQLSVVEWHPKNSTRVATATGSD--------NDPSIL 243 (416)
T ss_dssp TTEEEEESSSS-----CEEEEETTTTEEEEEEC-CCCCSSCCCCCEEEEEECSSCTTEEEEEECCS--------SSCCCC
T ss_pred CcEEEEEcCCC-----CEEEEECCCCCcceEEe-ccccccccCCceEEEEECCCCCCEEEEEECCC--------CCceEE
Confidence 56777877653 48999998876543221 11000 11122233332 24666666311 012577
Q ss_pred EEEcCcceEEEeccCCCCC-CCCCceeEEEe---CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCcee
Q 008089 170 ILNTETFVWKRATTSGNPP-SARDSHTCSSW---KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGH 245 (578)
Q Consensus 170 ~yd~~t~~W~~~~~~g~~p-~~R~~h~~~~~---~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~h 245 (578)
+||+.+..-. +. ... .......++.+ ++.+++.|+.++ .+.+||+.+.+-...-. . ....-.
T Consensus 244 ~~d~~~~~~~-~~---~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg------~v~~wd~~~~~~~~~~~---~-~~~~v~ 309 (416)
T 2pm9_A 244 IWDLRNANTP-LQ---TLNQGHQKGILSLDWCHQDEHLLLSSGRDN------TVLLWNPESAEQLSQFP---A-RGNWCF 309 (416)
T ss_dssp EEETTSTTSC-SB---CCCSCCSSCEEEEEECSSCSSCEEEEESSS------EEEEECSSSCCEEEEEE---C-SSSCCC
T ss_pred EEeCCCCCCC-cE---EeecCccCceeEEEeCCCCCCeEEEEeCCC------CEEEeeCCCCccceeec---C-CCCceE
Confidence 7888764210 00 011 11111122222 567777777543 48889987764332211 0 011111
Q ss_pred EEEEe-CC-EEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 246 STVAF-GK-NLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 246 s~v~~-~~-~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
++... ++ .+++.|+.+. .|.+||+.+..
T Consensus 310 ~~~~s~~~~~~l~s~~~d~------~i~iw~~~~~~ 339 (416)
T 2pm9_A 310 KTKFAPEAPDLFACASFDN------KIEVQTLQNLT 339 (416)
T ss_dssp CEEECTTCTTEEEECCSSS------EEEEEESCCCC
T ss_pred EEEECCCCCCEEEEEecCC------cEEEEEccCCC
Confidence 22233 33 5777777642 37888887653
No 172
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=88.25 E-value=3.7 Score=46.22 Aligned_cols=184 Identities=10% Similarity=0.046 Sum_probs=91.6
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCccc-EEEEE-C--CEEEEEccCCCCCCCCCceeeceEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGH-SAALV-G--KRLFIFGGCGKSSNTNDEVYYNDLY 169 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h-s~~~~-~--~~lyvfGG~~~~~~~~~~~~~ndv~ 169 (578)
+++.++.||.++ .+.+||+.+.++..+... ......- +++.. + +.+++.|+. ...+.
T Consensus 20 dg~~latg~~dg-----~I~vwd~~~~~~~~~~~l---~~h~~~V~~l~~s~~~~~~~l~s~s~-----------Dg~I~ 80 (753)
T 3jro_A 20 YGKRLATCSSDK-----TIKIFEVEGETHKLIDTL---TGHEGPVWRVDWAHPKFGTILASCSY-----------DGKVL 80 (753)
T ss_dssp SSCCEEEEETTT-----EEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCTTSCSEEEEEET-----------TSCEE
T ss_pred CCCeEEEEECCC-----cEEEEecCCCCCccceec---cCCcCceEEEEecCCCCCCEEEEEeC-----------CCeEE
Confidence 455666666543 478888877666554321 1111112 22322 2 567777773 24578
Q ss_pred EEEcCcceEEEeccCCCCCCCCCceeEEEe--C--CEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCcee
Q 008089 170 ILNTETFVWKRATTSGNPPSARDSHTCSSW--K--NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGH 245 (578)
Q Consensus 170 ~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~--~--~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~h 245 (578)
++|+.+..|..+..... ......++.+ + +.+++.|+.++ .+.+||+.+..-...... ......-.
T Consensus 81 vwd~~~~~~~~~~~~~~---h~~~V~~v~~sp~~~~~~l~sgs~dg------~I~vwdl~~~~~~~~~~~--~~~~~~v~ 149 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAV---HSASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKENGTTSPIII--DAHAIGVN 149 (753)
T ss_dssp EEEEETTEEEEEEEECC---CSSCEEEEEECCGGGCSEEEEEETTS------EEEEEECCSSSCCCCEEE--ECCSSCEE
T ss_pred EEECCCCcccccccccC---CCCCeEEEEECCCCCCCEEEEEeCCC------cEEEEEeecCCCcceeEe--ecCCCceE
Confidence 88988888766643211 1112222323 3 67888887553 478888866521111000 00111111
Q ss_pred EEEEe--------------CCEEEEEcCccCCCCccCcEEEEECCCC--cEEEEEeCCCCCCCceeeeEeeeeccCC---
Q 008089 246 STVAF--------------GKNLFVFGGFTDSQNLYDDLYMIDVDSG--LWTKVITTGEGPSARFSVAGDCLDPLKG--- 306 (578)
Q Consensus 246 s~v~~--------------~~~iyV~GG~~~~~~~~~dv~~ydi~t~--~W~~l~~~~~~P~~r~~~~~~~~~~~~~--- 306 (578)
++... ++.+++.|+.++ .|.+||+.+. .+..+..... ......+..+ ..+
T Consensus 150 ~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg------~I~iwd~~~~~~~~~~~~~~~~---h~~~V~~l~~--sp~~~~ 218 (753)
T 3jro_A 150 SASWAPATIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVLESTLEG---HSDWVRDVAW--SPTVLL 218 (753)
T ss_dssp EEEECCCC---------CGGGCCEEEEETTS------CEEEEEEETTTTEEEEEEEECC---CSSCEEEEEE--CCCCSS
T ss_pred EEEecCcccccccccccCCCCCEEEEEECCC------eEEEEeccCCcccceeeeeecC---CCCcEEEEEe--ccCCCC
Confidence 22222 256677776543 3888888765 3444433211 1112222223 234
Q ss_pred CEEEEEccccCC
Q 008089 307 GVLVFIGGCNKS 318 (578)
Q Consensus 307 ~~l~v~GG~~~~ 318 (578)
+.+++.||.+..
T Consensus 219 ~~~l~s~s~Dg~ 230 (753)
T 3jro_A 219 RSYLASVSQDRT 230 (753)
T ss_dssp SEEEEEEESSSC
T ss_pred CCEEEEEecCCE
Confidence 788888887654
No 173
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=88.21 E-value=23 Score=35.49 Aligned_cols=104 Identities=14% Similarity=0.033 Sum_probs=54.0
Q ss_pred CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEe-CCE-EEEEecCCCCCcccCceEE
Q 008089 144 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNK-IIVIGGEDGHDYYLSDVHI 221 (578)
Q Consensus 144 ~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~-~~~-lyV~GG~~~~~~~~~di~~ 221 (578)
++++++.|+. ...+.+||+.+..-...... .....-.+++.. ++. +++.|+.+ ..+.+
T Consensus 258 ~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~g~~d------g~i~v 317 (420)
T 3vl1_A 258 YGKYVIAGHV-----------SGVITVHNVFSKEQTIQLPS---KFTCSCNSLTVDGNNANYIYAGYEN------GMLAQ 317 (420)
T ss_dssp TTEEEEEEET-----------TSCEEEEETTTCCEEEEECC---TTSSCEEEEEECSSCTTEEEEEETT------SEEEE
T ss_pred CCCEEEEEcC-----------CCeEEEEECCCCceeEEccc---ccCCCceeEEEeCCCCCEEEEEeCC------CeEEE
Confidence 4566666663 23478889877653322111 111111122222 344 77777754 34889
Q ss_pred EECCCCc--eEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCC
Q 008089 222 LDTDTLT--WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (578)
Q Consensus 222 yD~~t~~--W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t 277 (578)
||+.+.. ...+.. .....-.++...++++++.|+.+. .+.+||+..
T Consensus 318 wd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~l~s~~~d~------~v~iw~~~~ 365 (420)
T 3vl1_A 318 WDLRSPECPVGEFLI----NEGTPINNVYFAAGALFVSSGFDT------SIKLDIISD 365 (420)
T ss_dssp EETTCTTSCSEEEEE----STTSCEEEEEEETTEEEEEETTTE------EEEEEEECC
T ss_pred EEcCCCcCchhhhhc----cCCCCceEEEeCCCCEEEEecCCc------cEEEEeccC
Confidence 9987653 222221 011122233445778888887643 377888765
No 174
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=88.02 E-value=24 Score=35.56 Aligned_cols=148 Identities=16% Similarity=0.096 Sum_probs=73.3
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd 172 (578)
+++.++.|+.++ .+.+||+.+.+-...- .+. ...-.+++.. ++..++.|+. ...+.++|
T Consensus 134 dg~~l~s~~~d~-----~i~iwd~~~~~~~~~~-~~h---~~~v~~~~~~p~~~~l~s~s~-----------d~~v~iwd 193 (393)
T 1erj_A 134 DGKFLATGAEDR-----LIRIWDIENRKIVMIL-QGH---EQDIYSLDYFPSGDKLVSGSG-----------DRTVRIWD 193 (393)
T ss_dssp TSSEEEEEETTS-----CEEEEETTTTEEEEEE-CCC---SSCEEEEEECTTSSEEEEEET-----------TSEEEEEE
T ss_pred CCCEEEEEcCCC-----eEEEEECCCCcEEEEE-ccC---CCCEEEEEEcCCCCEEEEecC-----------CCcEEEEE
Confidence 567777777653 5889999887654321 111 1111223332 3455566662 24577888
Q ss_pred cCcceEEEeccCCCCCCCCCceeEEEe--CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCC---CCCCceeEE
Q 008089 173 TETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMV---LSPRAGHST 247 (578)
Q Consensus 173 ~~t~~W~~~~~~g~~p~~R~~h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~---p~~R~~hs~ 247 (578)
+.+......-.. .....+++.. ++.+++.|+.++ .+.+||+.+..-......... .....-.++
T Consensus 194 ~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~s~d~------~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v 262 (393)
T 1erj_A 194 LRTGQCSLTLSI-----EDGVTTVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKDSVYSV 262 (393)
T ss_dssp TTTTEEEEEEEC-----SSCEEEEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSSCEEEE
T ss_pred CCCCeeEEEEEc-----CCCcEEEEEECCCCCEEEEEcCCC------cEEEEECCCCcEEEeecccccCCCCCCCCEEEE
Confidence 887765433211 0111222222 567888887653 378899887654332110000 001111122
Q ss_pred EEe-CCEEEEEcCccCCCCccCcEEEEECCCC
Q 008089 248 VAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (578)
Q Consensus 248 v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~ 278 (578)
+.. ++++++.|+.+. .|.+||+.+.
T Consensus 263 ~~~~~g~~l~s~s~d~------~v~~wd~~~~ 288 (393)
T 1erj_A 263 VFTRDGQSVVSGSLDR------SVKLWNLQNA 288 (393)
T ss_dssp EECTTSSEEEEEETTS------EEEEEEC---
T ss_pred EECCCCCEEEEEeCCC------EEEEEECCCC
Confidence 222 456677776542 4788888764
No 175
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=87.88 E-value=18 Score=34.56 Aligned_cols=194 Identities=11% Similarity=0.041 Sum_probs=95.2
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeec-CCCCCCCcceeEEEECCEEEEE----cccCC------
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIK-GSPPTPRDSHSCTTVGENLYVF----GGTDG------ 105 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~-g~~P~~R~~hs~~~~~~kIYv~----GG~~~------ 105 (578)
++++..++.||+.... ...+++||+.+++...+... ...+..+....++.-++++|+. |....
T Consensus 73 ~l~~~~dg~l~v~~~~------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~ 146 (296)
T 3e5z_A 73 GHCLNKQGHLIACSHG------LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGG 146 (296)
T ss_dssp EEEECTTCCEEEEETT------TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCC
T ss_pred eeeECCCCcEEEEecC------CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccc
Confidence 3444333346665421 14589999988887654311 1111112222333336788886 43210
Q ss_pred --CCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcC-cceE---
Q 008089 106 --MNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTE-TFVW--- 178 (578)
Q Consensus 106 --~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~-t~~W--- 178 (578)
......+|+||+. .+...+.. ... .-.+++.. ++++++.+.. .+.+++||+. +.+.
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~~--~~~---~~~gi~~s~dg~~lv~~~~-----------~~~i~~~~~~~~g~~~~~ 209 (296)
T 3e5z_A 147 EMELPGRWVFRLAPD-GTLSAPIR--DRV---KPNGLAFLPSGNLLVSDTG-----------DNATHRYCLNARGETEYQ 209 (296)
T ss_dssp CCCSSSCEEEEECTT-SCEEEEEC--CCS---SEEEEEECTTSCEEEEETT-----------TTEEEEEEECSSSCEEEE
T ss_pred cccCCCcEEEEECCC-CCEEEeec--CCC---CCccEEECCCCCEEEEeCC-----------CCeEEEEEECCCCcCcCC
Confidence 1113479999987 55544321 111 11233333 3555544431 2468888876 4444
Q ss_pred EEeccCCCCCCCCCceeEEE-eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEE-e-C-CEE
Q 008089 179 KRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-F-G-KNL 254 (578)
Q Consensus 179 ~~~~~~g~~p~~R~~h~~~~-~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~-~-~-~~i 254 (578)
..+- ......+ ..++. -++.|||.. . +.|.+||++......+.. +.. -.+++. - + +.|
T Consensus 210 ~~~~-~~~~~~p---~~i~~d~~G~l~v~~--~------~~v~~~~~~g~~~~~~~~----~~~--~~~~~f~~~d~~~L 271 (296)
T 3e5z_A 210 GVHF-TVEPGKT---DGLRVDAGGLIWASA--G------DGVHVLTPDGDELGRVLT----PQT--TSNLCFGGPEGRTL 271 (296)
T ss_dssp EEEE-CCSSSCC---CSEEEBTTSCEEEEE--T------TEEEEECTTSCEEEEEEC----SSC--CCEEEEESTTSCEE
T ss_pred CeEe-eCCCCCC---CeEEECCCCCEEEEc--C------CeEEEECCCCCEEEEEEC----CCC--ceeEEEECCCCCEE
Confidence 1221 1111111 12333 367888875 1 348999998665555543 222 112222 1 2 256
Q ss_pred EEEcCccCCCCccCcEEEEECCCCc
Q 008089 255 FVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 255 yV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
|+-.. +.+|+|+++++.
T Consensus 272 ~v~t~--------~~l~~~~~~~~~ 288 (296)
T 3e5z_A 272 YMTVS--------TEFWSIETNVRG 288 (296)
T ss_dssp EEEET--------TEEEEEECSCCB
T ss_pred EEEcC--------CeEEEEEccccc
Confidence 66542 248999988865
No 176
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=87.62 E-value=23 Score=37.28 Aligned_cols=174 Identities=10% Similarity=0.082 Sum_probs=80.9
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd 172 (578)
+++.++.|+.++ .+.+||.....-..+. + ... .-.+++.. ++++++.|+. ...+.+||
T Consensus 396 dg~~l~~~~~d~-----~v~~~~~~~~~~~~~~--~--~~~-~v~~~~~s~d~~~l~~~~~-----------d~~v~~w~ 454 (577)
T 2ymu_A 396 DGQTIASASDDK-----TVKLWNRNGQLLQTLT--G--HSS-SVWGVAFSPDDQTIASASD-----------DKTVKLWN 454 (577)
T ss_dssp TSSCEEEEETTS-----EEEEECTTCCEEEEEE--C--CSS-CEEEEEECTTSSEEEEEET-----------TSEEEEEE
T ss_pred CCCEEEEEeCCC-----EEEEEeCCCCEEEEec--C--CCC-CeEEEEECCCCCEEEEEcC-----------CCEEEEEE
Confidence 556666666542 4777775443333222 1 011 11122222 4556666662 13466778
Q ss_pred cCcceEEEeccCCCCCCCCCceeEE-EeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeC
Q 008089 173 TETFVWKRATTSGNPPSARDSHTCS-SWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFG 251 (578)
Q Consensus 173 ~~t~~W~~~~~~g~~p~~R~~h~~~-~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~ 251 (578)
........+... .. .-.+++ ..++++++.|+.++ .+.+||.....-..+... .......++.-+
T Consensus 455 ~~~~~~~~~~~~----~~-~v~~~~~spd~~~las~~~d~------~i~iw~~~~~~~~~~~~h----~~~v~~l~~s~d 519 (577)
T 2ymu_A 455 RNGQLLQTLTGH----SS-SVRGVAFSPDGQTIASASDDK------TVKLWNRNGQLLQTLTGH----SSSVRGVAFSPD 519 (577)
T ss_dssp TTSCEEEEEECC----SS-CEEEEEECTTSCEEEEEETTS------EEEEEETTSCEEEEEECC----SSCEEEEEECTT
T ss_pred CCCCEEEEEcCC----CC-CEEEEEEcCCCCEEEEEeCCC------EEEEEcCCCCEEEEEeCC----CCCEEEEEEcCC
Confidence 765554444311 11 112222 23677777776543 377788654433333220 111111122224
Q ss_pred CEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccC
Q 008089 252 KNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (578)
Q Consensus 252 ~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (578)
+++++.|+.+. .|.+||........+... .....+..+ ..++..++.||.+.
T Consensus 520 g~~l~s~~~dg------~v~lwd~~~~~~~~~~~h------~~~v~~~~f--s~dg~~l~s~~~D~ 571 (577)
T 2ymu_A 520 GQTIASASDDK------TVKLWNRNGQLLQTLTGH------SSSVWGVAF--SPDGQTIASASSDK 571 (577)
T ss_dssp SSCEEEEETTS------EEEEECTTSCEEEEEECC------SSCEEEEEE--CTTSSCEEEEETTS
T ss_pred CCEEEEEECcC------EEEEEeCCCCEEEEEcCC------CCCEEEEEE--cCCCCEEEEEeCCC
Confidence 56666676532 488898765544443321 111222223 34556666777654
No 177
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=87.46 E-value=21 Score=34.30 Aligned_cols=72 Identities=10% Similarity=0.052 Sum_probs=36.5
Q ss_pred EEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeee-cCCCCCCCcceeEEEE----CCEEEEEcccCCCCCCCcE
Q 008089 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVI-KGSPPTPRDSHSCTTV----GENLYVFGGTDGMNPLRDL 112 (578)
Q Consensus 38 v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~-~g~~P~~R~~hs~~~~----~~kIYv~GG~~~~~~~~~v 112 (578)
+++..++..++.|+.+ ..+.+||........+.. .+. ...-.++.. ++.+++.|+.++ .+
T Consensus 15 ~~~s~~g~~las~s~D------~~v~iw~~~~~~~~~~~~l~gH----~~~V~~v~~s~~~~g~~l~s~s~D~-----~v 79 (297)
T 2pm7_B 15 AVMDYYGKRMATCSSD------KTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWAHPKFGTILASCSYDG-----KV 79 (297)
T ss_dssp EEECTTSSEEEEEETT------SCEEEEEBCSSCBCCCEEECCC----SSCEEEEEECCGGGCSEEEEEETTT-----EE
T ss_pred EEECCCCCEEEEEeCC------CEEEEEecCCCCcEEEEEEccc----cCCeEEEEecCCCcCCEEEEEcCCC-----EE
Confidence 3443333466667753 347888876543222111 111 111112222 256777777653 47
Q ss_pred EEEECCCCeEEe
Q 008089 113 HILDTSSHTWIS 124 (578)
Q Consensus 113 ~~yD~~t~~W~~ 124 (578)
.++|+.+..|..
T Consensus 80 ~iWd~~~~~~~~ 91 (297)
T 2pm7_B 80 MIWKEENGRWSQ 91 (297)
T ss_dssp EEEEBSSSCBCC
T ss_pred EEEEcCCCceEE
Confidence 888888776644
No 178
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=87.40 E-value=18 Score=35.46 Aligned_cols=152 Identities=14% Similarity=0.128 Sum_probs=68.7
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEEC---CEEEEEccCCCCCCCCCceeeceEEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG---KRLFIFGGCGKSSNTNDEVYYNDLYI 170 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~---~~lyvfGG~~~~~~~~~~~~~ndv~~ 170 (578)
++.+++.|+.++ .+.++|..+..|..+........ .-.++.... +.+++.|+.+ ..+.+
T Consensus 164 ~~~~l~s~s~D~-----~i~iW~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~D-----------~~v~i 225 (330)
T 2hes_X 164 SEALLASSSYDD-----TVRIWKDYDDDWECVAVLNGHEG--TVWSSDFDKTEGVFRLCSGSDD-----------STVRV 225 (330)
T ss_dssp SSSEEEEEETTS-----CEEEEEEETTEEEEEEEECCCSS--CEEEEEECCSSSSCEEEEEETT-----------SCEEE
T ss_pred CCCEEEEEcCCC-----eEEEEECCCCCeeEEEEccCCCC--cEEEEEecCCCCeeEEEEEeCC-----------CeEEE
Confidence 566777777654 37777777776755432111000 111222222 2345556621 23444
Q ss_pred EEcCc------ceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCC-c
Q 008089 171 LNTET------FVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPR-A 243 (578)
Q Consensus 171 yd~~t------~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R-~ 243 (578)
+|+.+ ..|........ .....-.+++...+.+++.||.++ .+.+||..+..|..+.... ..... .
T Consensus 226 w~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~~l~s~~~dg------~v~iw~~~~~~~~~~~~~~-~~h~~~~ 297 (330)
T 2hes_X 226 WKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNGLIASVGADG------VLAVYEEVDGEWKVFAKRA-LCHGVYE 297 (330)
T ss_dssp EEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTSCEEEEETTS------CEEEEEEETTEEEEEEEES-CTTTTSC
T ss_pred EEecCCCccccceeEEeeeccc-ccccceEEEEEcCCCEEEEEeCCC------EEEEEEcCCCceEEEeccc-cccccce
Confidence 44432 24544432111 011112222223445667777543 3778888888886654310 01111 1
Q ss_pred eeEEEEe---CCEEEEEcCccCCCCccCcEEEEECCC
Q 008089 244 GHSTVAF---GKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (578)
Q Consensus 244 ~hs~v~~---~~~iyV~GG~~~~~~~~~dv~~ydi~t 277 (578)
-.++... ++++++.||.+. .|.+||+++
T Consensus 298 v~~v~~~~~~~~~~las~s~Dg------~v~~W~~~~ 328 (330)
T 2hes_X 298 INVVKWLELNGKTILATGGDDG------IVNFWSLEK 328 (330)
T ss_dssp EEEEEEC-----CCEEEEETTS------EEEEEEC--
T ss_pred EEEEEEecCCCceEEEEecCCC------cEEEEEecc
Confidence 1122222 356777777643 377777654
No 179
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=87.31 E-value=13 Score=41.48 Aligned_cols=162 Identities=14% Similarity=0.130 Sum_probs=83.9
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCC--e-EEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSH--T-WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYI 170 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~--~-W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~ 170 (578)
+++..++....+....+++|++|+.+. . |..+... ...... .....++.||+..... .....+++
T Consensus 278 DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~~-~~~~dg~~l~~~s~~~--------~~~~~l~~ 345 (741)
T 1yr2_A 278 DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD---LKAQWD-FVDGVGDQLWFVSGDG--------APLKKIVR 345 (741)
T ss_dssp TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS---SSSCEE-EEEEETTEEEEEECTT--------CTTCEEEE
T ss_pred CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC---CCceEE-EEeccCCEEEEEECCC--------CCCCEEEE
Confidence 554333333333223568999999876 6 7766421 111111 1223567777765421 11356889
Q ss_pred EEcCc--ceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEE
Q 008089 171 LNTET--FVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV 248 (578)
Q Consensus 171 yd~~t--~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v 248 (578)
+|+.+ ..|+.+..... .....+...++.+++....++ ...++.+|+....-..+.. |.... ...+
T Consensus 346 ~d~~~~~~~~~~l~~~~~----~~l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~g~~~~~l~~----~~~~~-v~~~ 412 (741)
T 1yr2_A 346 VDLSGSTPRFDTVVPESK----DNLESVGIAGNRLFASYIHDA----KSQVLAFDLDGKPAGAVSL----PGIGS-ASGL 412 (741)
T ss_dssp EECSSSSCEEEEEECCCS----SEEEEEEEEBTEEEEEEEETT----EEEEEEEETTSCEEEECBC----SSSCE-EEEE
T ss_pred EeCCCCccccEEEecCCC----CeEEEEEEECCEEEEEEEECC----EEEEEEEeCCCCceeeccC----CCCeE-EEEe
Confidence 99887 57988753211 111123334778777765443 3458888976554444431 21111 1111
Q ss_pred Ee--CC-EEEEE-cCccCCCCccCcEEEEECCCCcEEEEE
Q 008089 249 AF--GK-NLFVF-GGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (578)
Q Consensus 249 ~~--~~-~iyV~-GG~~~~~~~~~dv~~ydi~t~~W~~l~ 284 (578)
.. ++ .|++. .+.. .-..+|.||+.++..+.+.
T Consensus 413 ~~s~d~~~l~~~~ss~~----~P~~i~~~d~~tg~~~~l~ 448 (741)
T 1yr2_A 413 SGRPGDRHAYLSFSSFT----QPATVLALDPATAKTTPWE 448 (741)
T ss_dssp ECCBTCSCEEEEEEETT----EEEEEEEEETTTTEEEECS
T ss_pred ecCCCCCEEEEEEcCCC----CCCEEEEEECCCCcEEEEe
Confidence 11 22 33332 2221 1356899999988866553
No 180
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=87.17 E-value=8.4 Score=38.23 Aligned_cols=54 Identities=4% Similarity=-0.194 Sum_probs=28.0
Q ss_pred CceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 217 SDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 217 ~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
..+.+||..+..-...-. .........+..-++.+++.|+.+. .|.+||+.+..
T Consensus 314 ~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~dg------~i~iw~~~~~~ 367 (408)
T 4a11_B 314 STIAVYTVYSGEQITMLK---GHYKTVDCCVFQSNFQELYSGSRDC------NILAWVPSLYE 367 (408)
T ss_dssp TEEEEEETTTCCEEEEEC---CCSSCEEEEEEETTTTEEEEEETTS------CEEEEEECC--
T ss_pred CEEEEEECcCCcceeeec---cCCCeEEEEEEcCCCCEEEEECCCC------eEEEEeCCCCC
Confidence 358889987755433221 1111111222233456777777643 48889888753
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=86.97 E-value=12 Score=36.66 Aligned_cols=192 Identities=11% Similarity=0.058 Sum_probs=92.9
Q ss_pred cccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCccc
Q 008089 59 TNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGH 138 (578)
Q Consensus 59 ~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 138 (578)
...+|++|..+..-..+ .........-+++.++|....+......+|++|+.+.+...+... +. ..
T Consensus 42 ~~~l~~~d~~~~~~~~l--------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~---~~---~~ 107 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI--------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA---KN---IR 107 (347)
T ss_dssp EEEEEEEETTTCCEEEE--------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE---SE---EE
T ss_pred cceEEEEeCCCCceEEc--------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC---CC---cc
Confidence 46799999988776554 111111122245433333322211234699999998887665421 11 12
Q ss_pred EEEEE-CCEEEEEccCCCCCCC------------CCc----eeeceEEEEEcCcceE-EEeccCCCCCCCCCceeEEEe-
Q 008089 139 SAALV-GKRLFIFGGCGKSSNT------------NDE----VYYNDLYILNTETFVW-KRATTSGNPPSARDSHTCSSW- 199 (578)
Q Consensus 139 s~~~~-~~~lyvfGG~~~~~~~------------~~~----~~~ndv~~yd~~t~~W-~~~~~~g~~p~~R~~h~~~~~- 199 (578)
..+.. +++.++|......... ... .....++++|+.+.+. ..+.. + ........
T Consensus 108 ~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~----~---~~~~~~~sp 180 (347)
T 2gop_A 108 SLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK----P---RFSSGIWHR 180 (347)
T ss_dssp EEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE----E---TTCEEEEET
T ss_pred ceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC----C---CcccccCCC
Confidence 22232 4443344331100000 000 1146799999998887 66542 1 22233333
Q ss_pred CCEEEEEecCCCCCc--c-cCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCC--CCccCcEEEEE
Q 008089 200 KNKIIVIGGEDGHDY--Y-LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS--QNLYDDLYMID 274 (578)
Q Consensus 200 ~~~lyV~GG~~~~~~--~-~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~--~~~~~dv~~yd 274 (578)
++ +++.+....... . ..+++.+| +..++.+.. . .......-+++.+++++.... ......||++|
T Consensus 181 dg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~---~----~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 181 DK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFE---K----VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp TE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEE---E----ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred Ce-EEEEEecccccccccccccEEEeC--CCceEEecc---C----cceeeECCCCCEEEEEEccccCCccccceEEEEC
Confidence 45 555554332211 2 45788898 667776653 1 111222445544444433221 11245799999
Q ss_pred CCCCcEEEE
Q 008089 275 VDSGLWTKV 283 (578)
Q Consensus 275 i~t~~W~~l 283 (578)
++.+..+
T Consensus 251 --~~~~~~l 257 (347)
T 2gop_A 251 --GKEVMGI 257 (347)
T ss_dssp --SSCEEES
T ss_pred --CCceEec
Confidence 6666554
No 182
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=86.92 E-value=25 Score=34.60 Aligned_cols=75 Identities=16% Similarity=0.067 Sum_probs=37.3
Q ss_pred CC-EEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeE-EEEe-CC-EEEEEcCccCCCCccCcEEEEEC
Q 008089 200 KN-KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHS-TVAF-GK-NLFVFGGFTDSQNLYDDLYMIDV 275 (578)
Q Consensus 200 ~~-~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs-~v~~-~~-~iyV~GG~~~~~~~~~dv~~ydi 275 (578)
++ .+|+.+.. .+.+.+||+.+..+..+......+....... ++.. ++ .||+..... .+.+.+|++
T Consensus 221 dg~~l~v~~~~------~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~-----~~~i~v~~~ 289 (361)
T 3scy_A 221 DGKFAYLINEI------GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK-----ADGVAIFKV 289 (361)
T ss_dssp TSSEEEEEETT------TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS-----SCEEEEEEE
T ss_pred CCCEEEEEcCC------CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC-----CCEEEEEEE
Confidence 44 46665422 2458888887777655543211222222222 3332 33 455544320 134667666
Q ss_pred --CCCcEEEEEe
Q 008089 276 --DSGLWTKVIT 285 (578)
Q Consensus 276 --~t~~W~~l~~ 285 (578)
.++.+..+..
T Consensus 290 ~~~~g~~~~~~~ 301 (361)
T 3scy_A 290 DETNGTLTKVGY 301 (361)
T ss_dssp CTTTCCEEEEEE
T ss_pred cCCCCcEEEeeE
Confidence 4677776654
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=86.88 E-value=20 Score=39.55 Aligned_cols=260 Identities=10% Similarity=0.026 Sum_probs=123.8
Q ss_pred CCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCC-CcceeEEEE--CCEEEEEcccCCCCCCCcEEEEECC
Q 008089 42 GGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTP-RDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTS 118 (578)
Q Consensus 42 ~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~-R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~yD~~ 118 (578)
+|+++|.+--... .....+|+.+.....|+.+.....+... ........+ +++.++|.-..+......++++|+.
T Consensus 78 dG~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 78 RNGRFFYVRTHKD--KEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp ETTEEEEEEECTT--CSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred ECCEEEEEEEcCC--CeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 3555655432211 1235688998877788776411111000 111122222 5565555432222223579999999
Q ss_pred CCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCC--CCCCceeeceEEEEEcCcceE--EEeccCCCCCCCCCc
Q 008089 119 SHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSS--NTNDEVYYNDLYILNTETFVW--KRATTSGNPPSARDS 193 (578)
Q Consensus 119 t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~--~~~~~~~~ndv~~yd~~t~~W--~~~~~~g~~p~~R~~ 193 (578)
+.+..... ..+.... ...+.. +++.++++...... ..........++++++.+..- ..+.. ....+...
T Consensus 156 tg~~~~~~---~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~--~~~~~~~~ 229 (695)
T 2bkl_A 156 SGEWSKVD---VIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE--RTGDPTTF 229 (695)
T ss_dssp TCCBCSSC---CBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC--CCCCTTCE
T ss_pred CCCCcCCc---ccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe--cCCCCEEE
Confidence 98764111 1122221 233333 55666666542210 000112345689999876652 22211 11111122
Q ss_pred eeE-EEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEE
Q 008089 194 HTC-SSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYM 272 (578)
Q Consensus 194 h~~-~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ 272 (578)
... ..-+++.+++...... ...+++++|..+..|+.+.... .. . ...+..++.+|+..... .....|++
T Consensus 230 ~~~~~SpDG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~~---~~-~-~~~~~~~g~l~~~s~~~---~~~~~l~~ 299 (695)
T 2bkl_A 230 LQSDLSRDGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVKGV---GA-K-YEVHAWKDRFYVLTDEG---APRQRVFE 299 (695)
T ss_dssp EEEEECTTSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEECS---SC-C-EEEEEETTEEEEEECTT---CTTCEEEE
T ss_pred EEEEECCCCCEEEEEEeCCC--CceEEEEEcCCCCceEEeecCC---Cc-e-EEEEecCCcEEEEECCC---CCCCEEEE
Confidence 222 2225555555443221 2457888888778888886421 11 1 22223555665554322 12356999
Q ss_pred EECCCCc---EEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCCCCccCcEEEEec
Q 008089 273 IDVDSGL---WTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYT 330 (578)
Q Consensus 273 ydi~t~~---W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d~~~l~~ 330 (578)
+|+.+.. |+.+.... +........+ .++.+++....+. ...+|.++.
T Consensus 300 ~d~~~~~~~~~~~l~~~~----~~~~l~~~~~---~~~~lv~~~~~dg----~~~l~~~~~ 349 (695)
T 2bkl_A 300 VDPAKPARASWKEIVPED----SSASLLSVSI---VGGHLSLEYLKDA----TSEVRVATL 349 (695)
T ss_dssp EBTTBCSGGGCEEEECCC----SSCEEEEEEE---ETTEEEEEEEETT----EEEEEEEET
T ss_pred EeCCCCCccCCeEEecCC----CCCeEEEEEE---ECCEEEEEEEECC----EEEEEEEeC
Confidence 9998765 88876532 1112222222 2667777654332 234666653
No 184
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=86.84 E-value=21 Score=33.74 Aligned_cols=181 Identities=12% Similarity=0.120 Sum_probs=90.1
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCC-CcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEA-REGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYI 170 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~-R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~ 170 (578)
++++|+.+..+ ..+.+||+...........+..+.. ..-+.+++. ++++|+.+.. ....+++
T Consensus 40 ~g~l~v~~~~~-----~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~----------~~~~i~~ 104 (286)
T 1q7f_A 40 QNDIIVADTNN-----HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS----------PTHQIQI 104 (286)
T ss_dssp TCCEEEEEGGG-----TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG----------GGCEEEE
T ss_pred CCCEEEEECCC-----CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC----------CCCEEEE
Confidence 45677775432 3588888775443333221111111 122344443 5788887631 0245888
Q ss_pred EEcCcceEEEeccCCCCCCCCCceeEEEe-CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEE
Q 008089 171 LNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA 249 (578)
Q Consensus 171 yd~~t~~W~~~~~~g~~p~~R~~h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~ 249 (578)
||........+... ....-+.+++. ++++||....+ +.+++||+.......+...+.. ..-..++.
T Consensus 105 ~d~~g~~~~~~~~~----~~~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~~g~~~~~~~~~~~~---~~p~~i~~ 171 (286)
T 1q7f_A 105 YNQYGQFVRKFGAT----ILQHPRGVTVDNKGRIIVVECKV------MRVIIFDQNGNVLHKFGCSKHL---EFPNGVVV 171 (286)
T ss_dssp ECTTSCEEEEECTT----TCSCEEEEEECTTSCEEEEETTT------TEEEEECTTSCEEEEEECTTTC---SSEEEEEE
T ss_pred ECCCCcEEEEecCc----cCCCceEEEEeCCCCEEEEECCC------CEEEEEcCCCCEEEEeCCCCcc---CCcEEEEE
Confidence 88665544444211 11112333332 57788875422 4588999876655554321111 11122333
Q ss_pred e-CCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEcc
Q 008089 250 F-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGG 314 (578)
Q Consensus 250 ~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG 314 (578)
. ++++|+.... .+.|++||+.......+...+.. ....+.++. .++.|||...
T Consensus 172 ~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~g~~----~~p~~i~~d--~~G~l~v~~~ 225 (286)
T 1q7f_A 172 NDKQEIFISDNR------AHCVKVFNYEGQYLRQIGGEGIT----NYPIGVGIN--SNGEILIADN 225 (286)
T ss_dssp CSSSEEEEEEGG------GTEEEEEETTCCEEEEESCTTTS----CSEEEEEEC--TTCCEEEEEC
T ss_pred CCCCCEEEEECC------CCEEEEEcCCCCEEEEEccCCcc----CCCcEEEEC--CCCCEEEEeC
Confidence 2 4678886543 24599999876644444322111 112233342 3567777653
No 185
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=86.78 E-value=10 Score=36.98 Aligned_cols=73 Identities=14% Similarity=0.048 Sum_probs=37.5
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEee-ecCCCCCCCcceeEEEE----CCEEEEEcccCCCCCCCc
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPV-IKGSPPTPRDSHSCTTV----GENLYVFGGTDGMNPLRD 111 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~-~~g~~P~~R~~hs~~~~----~~kIYv~GG~~~~~~~~~ 111 (578)
++.+..++.+++.|+.+ ..+.++|+.++....+. ..+. ...-.++.. ++.+++.|+.++ .
T Consensus 18 ~v~~s~~g~~lasgs~D------~~v~lwd~~~~~~~~~~~l~gH----~~~V~~v~~~~~~~~~~l~s~s~D~-----~ 82 (316)
T 3bg1_A 18 DAQMDYYGTRLATCSSD------RSVKIFDVRNGGQILIADLRGH----EGPVWQVAWAHPMYGNILASCSYDR-----K 82 (316)
T ss_dssp EEEECGGGCEEEEEETT------TEEEEEEEETTEEEEEEEEECC----SSCEEEEEECCGGGSSCEEEEETTS-----C
T ss_pred EeeEcCCCCEEEEEeCC------CeEEEEEecCCCcEEEEEEcCC----CccEEEEEeCCCCCCCEEEEEECCC-----E
Confidence 34443333466667643 34788888766543221 1121 111112222 256777777654 4
Q ss_pred EEEEECCCCeEEe
Q 008089 112 LHILDTSSHTWIS 124 (578)
Q Consensus 112 v~~yD~~t~~W~~ 124 (578)
+.++|+.+..|..
T Consensus 83 v~iWd~~~~~~~~ 95 (316)
T 3bg1_A 83 VIIWREENGTWEK 95 (316)
T ss_dssp EEEECCSSSCCCE
T ss_pred EEEEECCCCcceE
Confidence 7888888766643
No 186
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=86.71 E-value=24 Score=34.11 Aligned_cols=203 Identities=9% Similarity=0.060 Sum_probs=97.1
Q ss_pred ceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCC--cEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCC
Q 008089 34 GHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLR 110 (578)
Q Consensus 34 ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~ 110 (578)
.|...+..+++ ||+.+. +.++.||+ ++ .|+--. +....-+++... ++++++....+ ..
T Consensus 39 ~~~~~~~pdG~-ilvs~~--------~~V~~~d~-~G~~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~~~----~~ 99 (276)
T 3no2_A 39 CNSVAATKAGE-ILFSYS--------KGAKMITR-DGRELWNIAA-----PAGCEMQTARILPDGNALVAWCGH----PS 99 (276)
T ss_dssp CCEEEECTTSC-EEEECB--------SEEEEECT-TSCEEEEEEC-----CTTCEEEEEEECTTSCEEEEEEST----TE
T ss_pred CcCeEECCCCC-EEEeCC--------CCEEEECC-CCCEEEEEcC-----CCCccccccEECCCCCEEEEecCC----CC
Confidence 45555666665 666321 35899998 44 465421 211122333333 56666654321 23
Q ss_pred cEEEEECCCC-eEEecccCCCC--CCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcc-eEEEeccCCC
Q 008089 111 DLHILDTSSH-TWISPSVRGEG--PEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWKRATTSGN 186 (578)
Q Consensus 111 ~v~~yD~~t~-~W~~l~~~g~~--P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~-~W~~~~~~g~ 186 (578)
.++.+|+... .|+. ...... +...........++.+++.... ...+.+||++.+ .|+.-.. .
T Consensus 100 ~v~~vd~~Gk~l~~~-~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~-----------~~~v~~~d~~G~~~w~~~~~--~ 165 (276)
T 3no2_A 100 TILEVNMKGEVLSKT-EFETGIERPHAQFRQINKNKKGNYLVPLFA-----------TSEVREIAPNGQLLNSVKLS--G 165 (276)
T ss_dssp EEEEECTTSCEEEEE-EECCSCSSGGGSCSCCEECTTSCEEEEETT-----------TTEEEEECTTSCEEEEEECS--S
T ss_pred EEEEEeCCCCEEEEE-eccCCCCcccccccCceECCCCCEEEEecC-----------CCEEEEECCCCCEEEEEECC--C
Confidence 6888887543 2432 211111 1111112233334555554331 245888998733 4654321 1
Q ss_pred CCCCCCceeEEE-eCCEEEEEecCCCCCcccCceEEEECCCC--ceEEecCCCCCCCCCc-e-eEEE-EeCCEEEEEc--
Q 008089 187 PPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTL--TWKELNTSGMVLSPRA-G-HSTV-AFGKNLFVFG-- 258 (578)
Q Consensus 187 ~p~~R~~h~~~~-~~~~lyV~GG~~~~~~~~~di~~yD~~t~--~W~~v~~~g~~p~~R~-~-hs~v-~~~~~iyV~G-- 258 (578)
..+++.. .++.++|.+..+ ..+..||++++ .|+.-.. ..+..|. . .++. ..++.+||..
T Consensus 166 -----~~~~~~~~~~g~~~v~~~~~------~~v~~~d~~tG~~~w~~~~~--~~~~~~l~~~~~~~~~~~G~i~v~~~~ 232 (276)
T 3no2_A 166 -----TPFSSAFLDNGDCLVACGDA------HCFVQLNLESNRIVRRVNAN--DIEGVQLFFVAQLFPLQNGGLYICNWQ 232 (276)
T ss_dssp -----CCCEEEECTTSCEEEECBTT------SEEEEECTTTCCEEEEEEGG--GSBSCCCSEEEEEEECTTSCEEEEEEC
T ss_pred -----CccceeEcCCCCEEEEeCCC------CeEEEEeCcCCcEEEEecCC--CCCCccccccccceEcCCCCEEEEecc
Confidence 1123333 367788776532 34899999854 4665432 1121122 1 2233 3367788776
Q ss_pred CccCCC--CccCcEEEEECCCC-cEEE
Q 008089 259 GFTDSQ--NLYDDLYMIDVDSG-LWTK 282 (578)
Q Consensus 259 G~~~~~--~~~~dv~~ydi~t~-~W~~ 282 (578)
|..... .....++.+|.+.+ .|+.
T Consensus 233 g~~~~~~~~~~~~~~~~~~~g~~~W~~ 259 (276)
T 3no2_A 233 GHDREAGKGKHPQLVEIDSEGKVVWQL 259 (276)
T ss_dssp TTCTTGGGSCCCSEEEECTTSBEEEEE
T ss_pred CccccccccCCceEEEECCCCCEEEEe
Confidence 432100 01224666665444 4663
No 187
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=86.63 E-value=2.4 Score=43.88 Aligned_cols=148 Identities=9% Similarity=0.045 Sum_probs=73.9
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEec-ccCCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISP-SVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYI 170 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l-~~~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~ 170 (578)
++.+++.|+.++ .+.++|+.+...... ...+ ....-.+++.. ++.+++-|+.+ ..+.+
T Consensus 131 ~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~~g---H~~~V~~l~f~p~~~~~l~s~s~D-----------~~v~i 191 (435)
T 4e54_B 131 HPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKGIG---AGGSITGLKFNPLNTNQFYASSME-----------GTTRL 191 (435)
T ss_dssp CTTCEEEEETTS-----CEEEECSSCCSCCEEECCCS---SSCCCCEEEECSSCTTEEEEECSS-----------SCEEE
T ss_pred CCCEEEEEeCCC-----EEEEEECCCCCceeEEEccC---CCCCEEEEEEeCCCCCEEEEEeCC-----------CEEEE
Confidence 456777887665 488888876543221 1111 11111233332 34566666632 34677
Q ss_pred EEcCcceEEEeccCCCCCCCCCceeEEE-eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEE
Q 008089 171 LNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA 249 (578)
Q Consensus 171 yd~~t~~W~~~~~~g~~p~~R~~h~~~~-~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~ 249 (578)
+|+.+.....+....... ....++.. .++.+++.|+.++ .+.+||+....-..+.. ....-.++..
T Consensus 192 wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~dg------~i~~wd~~~~~~~~~~~-----h~~~v~~v~~ 258 (435)
T 4e54_B 192 QDFKGNILRVFASSDTIN--IWFCSLDVSASSRMVVTGDNVG------NVILLNMDGKELWNLRM-----HKKKVTHVAL 258 (435)
T ss_dssp EETTSCEEEEEECCSSCS--CCCCCEEEETTTTEEEEECSSS------BEEEEESSSCBCCCSBC-----CSSCEEEEEE
T ss_pred eeccCCceeEEeccCCCC--ccEEEEEECCCCCEEEEEeCCC------cEeeeccCcceeEEEec-----ccceEEeeee
Confidence 888877665554221111 11122222 3677888887543 47888886543221111 1111112222
Q ss_pred e--CCEEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 250 F--GKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 250 ~--~~~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
. ++.+++.|+.+. .|.+||+.+..
T Consensus 259 ~p~~~~~~~s~s~d~------~v~iwd~~~~~ 284 (435)
T 4e54_B 259 NPCCDWFLATASVDQ------TVKIWDLRQVR 284 (435)
T ss_dssp CTTCSSEEEEEETTS------BCCEEETTTCC
T ss_pred cCCCceEEEEecCcc------eeeEEeccccc
Confidence 2 344677776543 36788887653
No 188
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=86.37 E-value=41 Score=36.54 Aligned_cols=117 Identities=15% Similarity=0.268 Sum_probs=61.7
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCC--cEEEeeecCCCCCC---CcceeEEEECCEEEEEcccCCCCCCCcEEEEEC
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPTP---RDSHSCTTVGENLYVFGGTDGMNPLRDLHILDT 117 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~P~~---R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~ 117 (578)
++.||+.+.. +.++.+|..++ .|+.-........+ ....+.++.+++||+... -..++.+|.
T Consensus 68 ~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~------dg~l~AlD~ 134 (582)
T 1flg_A 68 DGVIYVTASY-------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL------DASVVALNK 134 (582)
T ss_dssp TTEEEEEETT-------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET------TTEEEEEES
T ss_pred CCEEEEEcCC-------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC------CCEEEEEEC
Confidence 4578886653 23999999876 58763211110000 112344567889988532 246999999
Q ss_pred CCCe--EEecccCCCCCCCC--cccEEEEECC------EEEEEccCCCCCCCCCceeeceEEEEEcCcc--eEEEe
Q 008089 118 SSHT--WISPSVRGEGPEAR--EGHSAALVGK------RLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRA 181 (578)
Q Consensus 118 ~t~~--W~~l~~~g~~P~~R--~~hs~~~~~~------~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~--~W~~~ 181 (578)
.|.+ |+.-. . . +... ...+-++.++ .+|+ |.... .......++.||..+. .|...
T Consensus 135 ~TG~~~W~~~~-~-~-~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~-----e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 135 NTGKVVWKKKF-A-D-HGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGD-----EFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp SSCCEEEEEEC-S-C-GGGTCBCCSCCEEEECTTTCCEEEEE-CCBCG-----GGCCBCEEEEECTTTCCEEEEEE
T ss_pred CCCCEEeeecC-C-C-CCcCcccccCCEEeCCCcCCcEEEEE-ecccc-----ccCCCCEEEEEECCCCCEEeecC
Confidence 8764 87522 1 1 1111 1112234455 5554 33110 0112457899999865 48653
No 189
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=86.14 E-value=28 Score=34.42 Aligned_cols=145 Identities=8% Similarity=-0.018 Sum_probs=77.2
Q ss_pred EEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEEC--CEEEEEccCCCCCCCCCceeeceEEEEEc
Q 008089 96 NLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG--KRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (578)
Q Consensus 96 kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~--~~lyvfGG~~~~~~~~~~~~~ndv~~yd~ 173 (578)
++++.|+.++ .+.+||+.+.+....... ......-.+++... +.+++.|+. ...+.++|+
T Consensus 87 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~-----------d~~i~iwd~ 148 (383)
T 3ei3_B 87 TTVAVGSKGG-----DIILWDYDVQNKTSFIQG--MGPGDAITGMKFNQFNTNQLFVSSI-----------RGATTLRDF 148 (383)
T ss_dssp TEEEEEEBTS-----CEEEEETTSTTCEEEECC--CSTTCBEEEEEEETTEEEEEEEEET-----------TTEEEEEET
T ss_pred CEEEEEcCCC-----eEEEEeCCCcccceeeec--CCcCCceeEEEeCCCCCCEEEEEeC-----------CCEEEEEEC
Confidence 5777777653 488999887765433210 01111222344444 356666663 245778898
Q ss_pred CcceEEEeccCCCCCCCCCceeEEE-eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-C
Q 008089 174 ETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-G 251 (578)
Q Consensus 174 ~t~~W~~~~~~g~~p~~R~~h~~~~-~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~ 251 (578)
.+.....+..... ......+++. .++.+++.|+.+ ..+.+||+.......+.. ....-.++... +
T Consensus 149 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~-----h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 149 SGSVIQVFAKTDS--WDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKL-----HKAKVTHAEFNPR 215 (383)
T ss_dssp TSCEEEEEECCCC--SSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEEC-----SSSCEEEEEECSS
T ss_pred CCCceEEEeccCC--CCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEecc-----CCCcEEEEEECCC
Confidence 8877666542211 0111122222 256677777654 348889986554444432 11112223333 2
Q ss_pred CE-EEEEcCccCCCCccCcEEEEECCC
Q 008089 252 KN-LFVFGGFTDSQNLYDDLYMIDVDS 277 (578)
Q Consensus 252 ~~-iyV~GG~~~~~~~~~dv~~ydi~t 277 (578)
+. +++.|+.+ ..+.+||+.+
T Consensus 216 ~~~~l~s~~~d------~~i~iwd~~~ 236 (383)
T 3ei3_B 216 CDWLMATSSVD------ATVKLWDLRN 236 (383)
T ss_dssp CTTEEEEEETT------SEEEEEEGGG
T ss_pred CCCEEEEEeCC------CEEEEEeCCC
Confidence 33 77777653 2488999987
No 190
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=86.10 E-value=32 Score=35.06 Aligned_cols=94 Identities=10% Similarity=0.004 Sum_probs=51.3
Q ss_pred ceEEEEEcCcceEEEeccCCCCCCCCCceeEEE-eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCce
Q 008089 166 NDLYILNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAG 244 (578)
Q Consensus 166 ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~-~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~ 244 (578)
..+.+||+.+.+-...-. .... .-.+++. .++..++.|+.++ .+.+||+.+.+-...-. .....
T Consensus 290 ~~i~vwd~~~~~~~~~~~---~~~~-~v~~~~~~~~~~~l~sg~~dg------~i~vwd~~~~~~~~~~~-----~h~~~ 354 (464)
T 3v7d_B 290 NTLIVWDVAQMKCLYILS---GHTD-RIYSTIYDHERKRCISASMDT------TIRIWDLENGELMYTLQ-----GHTAL 354 (464)
T ss_dssp SCEEEEETTTTEEEEEEC---CCSS-CEEEEEEETTTTEEEEEETTS------CEEEEETTTTEEEEEEC-----CCSSC
T ss_pred CeEEEEECCCCcEEEEec---CCCC-CEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCcEEEEEe-----CCCCc
Confidence 457888988765433211 0111 1122222 2556777777553 38899988765332211 11222
Q ss_pred eEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcE
Q 008089 245 HSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 280 (578)
Q Consensus 245 hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W 280 (578)
..++...+..++.|+.+. .+.+||+.+..-
T Consensus 355 v~~~~~~~~~l~s~s~dg------~v~vwd~~~~~~ 384 (464)
T 3v7d_B 355 VGLLRLSDKFLVSAAADG------SIRGWDANDYSR 384 (464)
T ss_dssp EEEEEECSSEEEEEETTS------EEEEEETTTCCE
T ss_pred EEEEEEcCCEEEEEeCCC------cEEEEECCCCce
Confidence 334445567777777543 489999998753
No 191
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=85.98 E-value=3.8 Score=40.15 Aligned_cols=155 Identities=10% Similarity=0.036 Sum_probs=80.5
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd 172 (578)
+++||+.+..+ ..+++||+.+.++..+... ....-++++.. ++++|+...... .....+++||
T Consensus 55 ~g~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~----~~~~~~~i~~~~dg~l~v~~~~~~-------~~~~~i~~~d 118 (333)
T 2dg1_A 55 QGQLFLLDVFE-----GNIFKINPETKEIKRPFVS----HKANPAAIKIHKDGRLFVCYLGDF-------KSTGGIFAAT 118 (333)
T ss_dssp TSCEEEEETTT-----CEEEEECTTTCCEEEEEEC----SSSSEEEEEECTTSCEEEEECTTS-------SSCCEEEEEC
T ss_pred CCCEEEEECCC-----CEEEEEeCCCCcEEEEeeC----CCCCcceEEECCCCcEEEEeCCCC-------CCCceEEEEe
Confidence 56788876532 4699999998887654311 11122333333 467877654110 0124689999
Q ss_pred cCcceEEEeccCCCCCCCCCceeEEE-eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-
Q 008089 173 TETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF- 250 (578)
Q Consensus 173 ~~t~~W~~~~~~g~~p~~R~~h~~~~-~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~- 250 (578)
+.+.....+... ......-..++. -++.+|+.............++++|+++.+...+... . ..-..++..
T Consensus 119 ~~~~~~~~~~~~--~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~---~~~~~i~~~~ 191 (333)
T 2dg1_A 119 ENGDNLQDIIED--LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--I---SVANGIALST 191 (333)
T ss_dssp TTSCSCEEEECS--SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--E---SSEEEEEECT
T ss_pred CCCCEEEEEEcc--CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--C---CcccceEECC
Confidence 988776533211 111111122222 2677887543221111235699999887766655321 0 111223332
Q ss_pred CC-EEEEEcCccCCCCccCcEEEEECCC
Q 008089 251 GK-NLFVFGGFTDSQNLYDDLYMIDVDS 277 (578)
Q Consensus 251 ~~-~iyV~GG~~~~~~~~~dv~~ydi~t 277 (578)
++ .||+.... .+.|++||+.+
T Consensus 192 dg~~l~v~~~~------~~~i~~~d~~~ 213 (333)
T 2dg1_A 192 DEKVLWVTETT------ANRLHRIALED 213 (333)
T ss_dssp TSSEEEEEEGG------GTEEEEEEECT
T ss_pred CCCEEEEEeCC------CCeEEEEEecC
Confidence 33 57776432 24589999854
No 192
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=85.76 E-value=22 Score=39.51 Aligned_cols=195 Identities=11% Similarity=0.036 Sum_probs=97.4
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEE-ECCEEEEEcccCCC---------CCCCcEEEEECCCCeEEecccCC
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGM---------NPLRDLHILDTSSHTWISPSVRG 129 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~kIYv~GG~~~~---------~~~~~v~~yD~~t~~W~~l~~~g 129 (578)
..++++|+.+++.......+ .... +.+- -+ +.++++..+.. .....+|++++.+..-....+..
T Consensus 189 ~~i~v~dl~tg~~~~~~~~~----~~~~-~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~ 262 (741)
T 1yr2_A 189 RTVKFVGVADGKPLADELKW----VKFS-GLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA 262 (741)
T ss_dssp EEEEEEETTTCCEEEEEEEE----EESC-CCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC
T ss_pred EEEEEEECCCCCCCCccCCC----ceec-cEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec
Confidence 46999999999876532110 0101 1111 13 33333333222 12457899998765421000011
Q ss_pred CCCCCCcccEEEEE-CCE-EEEEccCCCCCCCCCceeeceEEEEEcCcc--e-EEEeccCCCCCCCCCceeEEEeCCEEE
Q 008089 130 EGPEAREGHSAALV-GKR-LFIFGGCGKSSNTNDEVYYNDLYILNTETF--V-WKRATTSGNPPSARDSHTCSSWKNKII 204 (578)
Q Consensus 130 ~~P~~R~~hs~~~~-~~~-lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~--~-W~~~~~~g~~p~~R~~h~~~~~~~~ly 204 (578)
....+......... +++ |++..... ....++++++|+.+. . |..+... ...........++.||
T Consensus 263 ~~~~~~~~~~~~~SpDG~~l~~~~~~~-------~~~~~~l~~~d~~~~~~~~~~~l~~~----~~~~~~~~~~dg~~l~ 331 (741)
T 1yr2_A 263 TPELPKRGHGASVSSDGRWVVITSSEG-------TDPVNTVHVARVTNGKIGPVTALIPD----LKAQWDFVDGVGDQLW 331 (741)
T ss_dssp CTTCTTCEEEEEECTTSCEEEEEEECT-------TCSCCEEEEEEEETTEECCCEEEECS----SSSCEEEEEEETTEEE
T ss_pred cCCCCeEEEEEEECCCCCEEEEEEEcc-------CCCcceEEEEECCCCCCcccEEecCC----CCceEEEEeccCCEEE
Confidence 11112222222222 444 44443311 012468899999876 6 8777531 1111122223467777
Q ss_pred EEecCCCCCcccCceEEEECCC--CceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEE
Q 008089 205 VIGGEDGHDYYLSDVHILDTDT--LTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (578)
Q Consensus 205 V~GG~~~~~~~~~di~~yD~~t--~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~ 282 (578)
+....+. ....|+.+|+.+ ..|+.+.... ......+...++.+++....+. ...||++++....-..
T Consensus 332 ~~s~~~~---~~~~l~~~d~~~~~~~~~~l~~~~----~~~l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~g~~~~~ 400 (741)
T 1yr2_A 332 FVSGDGA---PLKKIVRVDLSGSTPRFDTVVPES----KDNLESVGIAGNRLFASYIHDA----KSQVLAFDLDGKPAGA 400 (741)
T ss_dssp EEECTTC---TTCEEEEEECSSSSCEEEEEECCC----SSEEEEEEEEBTEEEEEEEETT----EEEEEEEETTSCEEEE
T ss_pred EEECCCC---CCCEEEEEeCCCCccccEEEecCC----CCeEEEEEEECCEEEEEEEECC----EEEEEEEeCCCCceee
Confidence 7754322 235699999987 5798886421 1112223344778777665432 3458999986554333
No 193
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=85.69 E-value=24 Score=33.21 Aligned_cols=196 Identities=9% Similarity=-0.033 Sum_probs=98.5
Q ss_pred EEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCCcEEEEE
Q 008089 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILD 116 (578)
Q Consensus 38 v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~yD 116 (578)
+++..++.||+.... .+.+++||+. +++....... ....-++++.. ++++|+.... ...+++||
T Consensus 67 i~~~~~g~l~v~~~~------~~~v~~~d~~-g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~ 131 (300)
T 2qc5_A 67 LIVSSLGDIWFTENG------ANKIGKLSKK-GGFTEYPLPQ---PDSGPYGITEGLNGDIWFTQLN-----GDRIGKLT 131 (300)
T ss_dssp EEECTTSCEEEEETT------TTEEEEECTT-SCEEEEECSS---TTCCEEEEEECSTTCEEEEETT-----TTEEEEEC
T ss_pred EEECCCCCEEEEecC------CCeEEEECCC-CCeEEecCCC---CCCCCccceECCCCCEEEEccC-----CCeEEEEC
Confidence 334333457775431 2458899988 6666543211 11222333333 5778887532 23688999
Q ss_pred CCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCcee
Q 008089 117 TSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT 195 (578)
Q Consensus 117 ~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~ 195 (578)
+. .+........ ....-+.++.. ++++|+.... ...+++||+ +.++..+..... ...-..
T Consensus 132 ~~-g~~~~~~~~~---~~~~~~~i~~d~~g~l~v~~~~-----------~~~i~~~~~-~g~~~~~~~~~~---~~~~~~ 192 (300)
T 2qc5_A 132 AD-GTIYEYDLPN---KGSYPAFITLGSDNALWFTENQ-----------NNSIGRITN-TGKLEEYPLPTN---AAAPVG 192 (300)
T ss_dssp TT-SCEEEEECSS---TTCCEEEEEECTTSSEEEEETT-----------TTEEEEECT-TCCEEEEECSST---TCCEEE
T ss_pred CC-CCEEEccCCC---CCCCceeEEECCCCCEEEEecC-----------CCeEEEECC-CCcEEEeeCCCC---CCCcce
Confidence 87 5554332111 11122233332 3568775431 245888988 566655432111 111223
Q ss_pred EEEe-CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEEEE
Q 008089 196 CSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMI 273 (578)
Q Consensus 196 ~~~~-~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~~y 273 (578)
++.. ++.||+.... .+.+.+||+ +..+....... ....-.+++.- +++|||.... .+.|.+|
T Consensus 193 i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~ 256 (300)
T 2qc5_A 193 ITSGNDGALWFVEIM------GNKIGRITT-TGEISEYDIPT---PNARPHAITAGKNSEIWFTEWG------ANQIGRI 256 (300)
T ss_dssp EEECTTSSEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECSTTCEEEEETT------TTEEEEE
T ss_pred EEECCCCCEEEEccC------CCEEEEEcC-CCcEEEEECCC---CCCCceEEEECCCCCEEEeccC------CCeEEEE
Confidence 3332 5678876421 234888998 55666553211 11111233332 4567776532 2458999
Q ss_pred ECCCCcEEEEE
Q 008089 274 DVDSGLWTKVI 284 (578)
Q Consensus 274 di~t~~W~~l~ 284 (578)
|+ +.....+.
T Consensus 257 ~~-~g~~~~~~ 266 (300)
T 2qc5_A 257 TN-DNTIQEYQ 266 (300)
T ss_dssp CT-TSCEEEEE
T ss_pred CC-CCcEEEEE
Confidence 98 56666543
No 194
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=85.62 E-value=23 Score=33.42 Aligned_cols=153 Identities=14% Similarity=0.162 Sum_probs=78.5
Q ss_pred eEEEECCEEEEEcccCCCCCCCcEEEEECCCCe-EE--ecccC-CCCCCCCcccEEEE-ECCEEEEEccCCCCCCCCCce
Q 008089 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT-WI--SPSVR-GEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEV 163 (578)
Q Consensus 89 s~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~-W~--~l~~~-g~~P~~R~~hs~~~-~~~~lyvfGG~~~~~~~~~~~ 163 (578)
+++.+.+++|+|=|. .+|+++..... .. .+... ..+|. ...++... .++++|+|=|
T Consensus 35 Ai~~~~g~~~fFkg~-------~~Wr~~~~~~~~~~P~~I~~~wp~lp~-~IDAA~~~~~~~k~yfFkG----------- 95 (218)
T 1gen_A 35 GIAQIRGEIFFFKDR-------FIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG----------- 95 (218)
T ss_dssp EEEEETTEEEEEETT-------EEEEESSTTSCCEEEEEGGGTCTTSCS-CCSEEEEETTTTEEEEEET-----------
T ss_pred EEEeCCCcEEEEECC-------EEEEEeCCCCccCCCEEHHHhcCCCCC-CccEEEEECCCCEEEEEeC-----------
Confidence 455568999999773 57777654421 11 11111 12332 22222222 2579999988
Q ss_pred eeceEEEEEcCcce---EEEeccCCCCCCCCCceeEEE--eCCEEEEEecCCCCCcccCceEEEECCCCceEE-----ec
Q 008089 164 YYNDLYILNTETFV---WKRATTSGNPPSARDSHTCSS--WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE-----LN 233 (578)
Q Consensus 164 ~~ndv~~yd~~t~~---W~~~~~~g~~p~~R~~h~~~~--~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~-----v~ 233 (578)
+..|+|+-.+.. =+.+...+-+.....-.++.. .++++|+|-| +..|.||..+++-.. +.
T Consensus 96 --~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG--------~~ywr~d~~~~~v~~gyPr~i~ 165 (218)
T 1gen_A 96 --NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG--------DKFWRYNEVKKKMDPGFPKLIA 165 (218)
T ss_dssp --TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCCEEHH
T ss_pred --CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC--------CEEEEEECccccccCCCCcchh
Confidence 457788743111 012222122222222234443 3689999966 348889987653211 11
Q ss_pred CCCCCCCCCceeEEEEeC--CEEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 234 TSGMVLSPRAGHSTVAFG--KNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 234 ~~g~~p~~R~~hs~v~~~--~~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
. .-+..+..-.++.... +.+|+|=|. ..|+||..+..
T Consensus 166 ~-~w~g~p~~idaAf~~~~~g~~YfFkg~--------~y~~~~~~~~~ 204 (218)
T 1gen_A 166 D-AWNAIPDNLDAVVDLQGGGHSYFFKGA--------YYLKLENQSLK 204 (218)
T ss_dssp H-HSSSCCSSCSEEEECTTTCEEEEEETT--------EEEEEETTEEE
T ss_pred h-ccCCCCCCCCEEEEEcCCCcEEEEECC--------EEEEEECCcee
Confidence 0 0011223334555554 789998774 37888876544
No 195
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=85.50 E-value=35 Score=35.00 Aligned_cols=209 Identities=11% Similarity=0.006 Sum_probs=106.4
Q ss_pred EEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEE
Q 008089 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLH 113 (578)
Q Consensus 36 s~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~ 113 (578)
..+++..++.||+.... .+.++++|+.++.-..+...+. ..+ .+.. ++.||+...... ..++
T Consensus 134 ~~la~d~~g~lyv~d~~------~~~I~~id~~~g~~~~~~~~~~-----~~~-ia~~~~g~~l~~~d~~~~----~~I~ 197 (409)
T 3hrp_A 134 WGIAAVGNNTVLAYQRD------DPRVRLISVDDNKVTTVHPGFK-----GGK-PAVTKDKQRVYSIGWEGT----HTVY 197 (409)
T ss_dssp EEEEECSTTEEEEEETT------TTEEEEEETTTTEEEEEEETCC-----BCB-CEECTTSSEEEEEBSSTT----CEEE
T ss_pred eEEEEeCCCCEEEEecC------CCcEEEEECCCCEEEEeeccCC-----CCc-eeEecCCCcEEEEecCCC----ceEE
Confidence 34455445568887652 2468999999877666542211 122 2222 345676653211 1699
Q ss_pred EEECCCCe-EEecccCCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCC
Q 008089 114 ILDTSSHT-WISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSA 190 (578)
Q Consensus 114 ~yD~~t~~-W~~l~~~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~ 190 (578)
+|+..+.. ...+.... ......-+++++. ++.||+... ...+++||+.+.....+...+.....
T Consensus 198 ~~d~~~~~~~~~~g~~~-~~~~~~p~~iav~p~~g~lyv~d~------------~~~I~~~d~~~~~~~~~~~~~~~g~~ 264 (409)
T 3hrp_A 198 VYMKASGWAPTRIGQLG-STFSGKIGAVALDETEEWLYFVDS------------NKNFGRFNVKTQEVTLIKQLELSGSL 264 (409)
T ss_dssp EEEGGGTTCEEEEEECC-TTSCSCCCBCEECTTSSEEEEECT------------TCEEEEEETTTCCEEEEEECCCCSCC
T ss_pred EEEcCCCceeEEeeecc-chhcCCcEEEEEeCCCCeEEEEEC------------CCcEEEEECCCCCEEEEecccccCCC
Confidence 99986542 22221000 0011222334443 578888322 23689999988775554221111111
Q ss_pred CCc-e-eEEEe--CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCC-------CC-c-eeEEEEe-CCEEEE
Q 008089 191 RDS-H-TCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLS-------PR-A-GHSTVAF-GKNLFV 256 (578)
Q Consensus 191 R~~-h-~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~-------~R-~-~hs~v~~-~~~iyV 256 (578)
... . .+++. ++.||+.... .+.|++||+....-......+.... .+ . -..+++. ++.|||
T Consensus 265 ~~~P~~~ia~~p~~g~lyv~d~~------~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyv 338 (409)
T 3hrp_A 265 GTNPGPYLIYYFVDSNFYMSDQN------LSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYI 338 (409)
T ss_dssp CCSSCCEEEEETTTTEEEEEETT------TTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEE
T ss_pred CCCccccEEEeCCCCEEEEEeCC------CCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEE
Confidence 112 1 33333 5889997532 3458899887652222221100000 01 1 1223332 456888
Q ss_pred EcC-ccCCCCccCcEEEEECCCCcEEEEEe
Q 008089 257 FGG-FTDSQNLYDDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 257 ~GG-~~~~~~~~~dv~~ydi~t~~W~~l~~ 285 (578)
... . .+.|.+||+.++....+..
T Consensus 339 ad~~~------~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 339 VDGFK------GYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp EETTT------TCEEEEEETTTTEEEEEEE
T ss_pred EeCCC------CCEEEEEECCCCEEEEEeC
Confidence 754 2 2458999987777666654
No 196
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=85.38 E-value=3.5 Score=42.59 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=32.0
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCc--eEEecCCCCCCCCCceeEEEEe--CCEEEEEcCccCCCCccCcEEEEECC
Q 008089 201 NKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVD 276 (578)
Q Consensus 201 ~~lyV~GG~~~~~~~~~di~~yD~~t~~--W~~v~~~g~~p~~R~~hs~v~~--~~~iyV~GG~~~~~~~~~dv~~ydi~ 276 (578)
..+++.|+.++ .|.+||+.+.. -..+.. ....-.++... +..+++.||..+ .|.+||+.
T Consensus 290 ~~~l~tg~~dg------~v~vwd~~~~~~~~~~~~~-----h~~~v~~i~~sp~~~~~l~s~~~d~------~i~iwd~~ 352 (430)
T 2xyi_A 290 EFILATGSADK------TVALWDLRNLKLKLHSFES-----HKDEIFQVQWSPHNETILASSGTDR------RLHVWDLS 352 (430)
T ss_dssp TTEEEEEETTS------EEEEEETTCTTSCSEEEEC-----CSSCEEEEEECSSCTTEEEEEETTS------CCEEEEGG
T ss_pred CCEEEEEeCCC------eEEEEeCCCCCCCeEEeec-----CCCCEEEEEECCCCCCEEEEEeCCC------cEEEEeCC
Confidence 34788887653 48889987532 111111 11111222222 235777777543 48888887
Q ss_pred C
Q 008089 277 S 277 (578)
Q Consensus 277 t 277 (578)
.
T Consensus 353 ~ 353 (430)
T 2xyi_A 353 K 353 (430)
T ss_dssp G
T ss_pred C
Confidence 6
No 197
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=85.30 E-value=25 Score=37.23 Aligned_cols=58 Identities=22% Similarity=0.198 Sum_probs=38.5
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEc
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~ 173 (578)
++++|+|-| +..|+||..+.+.....-. .+| . --++....+++|+|-| +..|+||.
T Consensus 158 ~~~~yfFkG-------~~yw~yd~~~~~~~~~~w~-gi~--~-iDAA~~~~g~~YfFkG-------------~~y~rfd~ 213 (460)
T 1qhu_A 158 DEGILFFQG-------NRKWFWDLTTGTKKERSWP-AVG--N-CTSALRWLGRYYCFQG-------------NQFLRFNP 213 (460)
T ss_dssp SSEEEEEET-------TEEEEEETTTTEEEEECCT-TSC--C-CSEEEEETTEEEEEET-------------TEEEEECT
T ss_pred CCeEEEEec-------ccEEEEecccceeecccCC-CCC--c-cchheeeCCceEEEEC-------------CEEEEEcC
Confidence 678899987 4689999988876532211 122 2 2344445789999988 45677776
Q ss_pred Cc
Q 008089 174 ET 175 (578)
Q Consensus 174 ~t 175 (578)
.+
T Consensus 214 ~~ 215 (460)
T 1qhu_A 214 VS 215 (460)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 198
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=85.19 E-value=23 Score=38.76 Aligned_cols=109 Identities=10% Similarity=-0.083 Sum_probs=52.9
Q ss_pred cEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCC----CCCCcEEEEECCCCeEEecccCCCCCCCCc
Q 008089 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGM----NPLRDLHILDTSSHTWISPSVRGEGPEARE 136 (578)
Q Consensus 61 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~----~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~ 136 (578)
.++++|+.+++-..+.............-+..-+++.++++..+.. .....++++|+.+.+...+..... ...+.
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~~~ 116 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV-SNAKL 116 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC-CSCCC
T ss_pred CEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcc-ccccc
Confidence 6899999887655433111110001111222225665555543322 234789999998877654432111 11111
Q ss_pred ccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEec
Q 008089 137 GHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT 182 (578)
Q Consensus 137 ~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~ 182 (578)
...+...+++.++|+.. ..++++|+.+.....+.
T Consensus 117 ~~~~~SPdG~~la~~~~------------~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 117 QYAGWGPKGQQLIFIFE------------NNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp SBCCBCSSTTCEEEEET------------TEEEEESSSSSCCEEEE
T ss_pred cccEECCCCCEEEEEEC------------CeEEEEECCCCceEEEe
Confidence 11122224444444441 35778887776655553
No 199
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=85.03 E-value=24 Score=32.98 Aligned_cols=147 Identities=13% Similarity=0.090 Sum_probs=76.7
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeec---CCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEEEC
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIK---GSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDT 117 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~---g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~yD~ 117 (578)
++.+|+|=| +.+|+++.....+....+. +.+|. ... ++... ++++|+|-| +.+|+|+-
T Consensus 33 ~g~~y~Fkg--------~~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iD-Aa~~~~~~~~iyfFkG-------~~~w~~~~ 95 (207)
T 1pex_A 33 RGETMIFKD--------RFFWRLHPQQVDAELFLTKSFWPELPN-RID-AAYEHPSHDLIFIFRG-------RKFWALNG 95 (207)
T ss_dssp TTEEEEEET--------TEEEEECSSSSCCEEEEHHHHCTTSCS-SCC-EEEEETTTTEEEEEET-------TEEEEEST
T ss_pred CCcEEEEEC--------CEEEEEeCCCcCCCceehhHhccCCCC-Ccc-EEEEeccCCcEEEEcc-------CEEEEEeC
Confidence 446899866 4578887654443321111 23342 222 22222 589999987 46888864
Q ss_pred CCCeE---EecccCCCCCCCCcccEEEEE---CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEE-----ec-cCC
Q 008089 118 SSHTW---ISPSVRGEGPEAREGHSAALV---GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR-----AT-TSG 185 (578)
Q Consensus 118 ~t~~W---~~l~~~g~~P~~R~~hs~~~~---~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~-----~~-~~g 185 (578)
.+..- ..+...| +|..-..--+++. ++++|+|-| +..|+||..+.+-.. +. .-.
T Consensus 96 ~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~gk~yfFkG-------------~~ywr~d~~~~~~d~gyPr~i~~~~~ 161 (207)
T 1pex_A 96 YDILEGYPKKISELG-LPKEVKKISAAVHFEDTGKTLLFSG-------------NQVWRYDDTNHIMDKDYPRLIEEDFP 161 (207)
T ss_dssp TCCCTTCSEESTTTT-CCTTCCCCCEEEECTTTSEEEEEET-------------TEEEEEETTTTEECSSCCCBHHHHST
T ss_pred CeeccCCceeccccC-CCCCCccccEEEEeCCCCEEEEEeC-------------CEEEEEeCcCccccCCCCccHHHcCC
Confidence 32111 1121111 2321112223332 379999988 567899987643221 11 000
Q ss_pred CCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceE
Q 008089 186 NPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWK 230 (578)
Q Consensus 186 ~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~ 230 (578)
..| ..-.++...++++|+|-| +..|.||..+++-.
T Consensus 162 Gip--~~iDaAf~~~g~~YfFkg--------~~y~rf~~~~~~v~ 196 (207)
T 1pex_A 162 GIG--DKVDAVYEKNGYIYFFNG--------PIQFEYSIWSNRIV 196 (207)
T ss_dssp TSC--SCCSEEEEETTEEEEEET--------TEEEEEETTTTEEE
T ss_pred CCC--CCccEEEEcCCcEEEEEC--------CEEEEEeCCccEEe
Confidence 112 223344456899999966 34788888765533
No 200
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=85.02 E-value=27 Score=33.19 Aligned_cols=63 Identities=5% Similarity=-0.038 Sum_probs=32.9
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCC-CCceeEEEEeCC-----EEEEEcCccCCCCccCcEEEEE
Q 008089 201 NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLS-PRAGHSTVAFGK-----NLFVFGGFTDSQNLYDDLYMID 274 (578)
Q Consensus 201 ~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~-~R~~hs~v~~~~-----~iyV~GG~~~~~~~~~dv~~yd 274 (578)
+.+++.|+.++. +..++........+.. ... ...-.++....+ .+++.|+.+. .|.+||
T Consensus 182 ~~~l~~~~~~~~------~~~~~~~~~~~~~~~~---~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg------~i~iwd 246 (351)
T 3f3f_A 182 PEKLAVSALEQA------IIYQRGKDGKLHVAAK---LPGHKSLIRSISWAPSIGRWYQLIATGCKDG------RIRIFK 246 (351)
T ss_dssp CCEEEEEETTEE------EEEEECTTSCEEEEEE---CCCCCSCEEEEEECCCSSCSSEEEEEEETTS------CEEEEE
T ss_pred CcEEEEecCCCc------EEEEccCCCceeeeee---cCCCCcceeEEEECCCCCCcceEEEEEcCCC------eEEEEe
Confidence 667777765432 4455556665544433 111 112223333333 6778777643 377777
Q ss_pred CCCC
Q 008089 275 VDSG 278 (578)
Q Consensus 275 i~t~ 278 (578)
+.+.
T Consensus 247 ~~~~ 250 (351)
T 3f3f_A 247 ITEK 250 (351)
T ss_dssp EEEC
T ss_pred CCCC
Confidence 7653
No 201
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=84.72 E-value=29 Score=35.17 Aligned_cols=192 Identities=14% Similarity=0.159 Sum_probs=100.3
Q ss_pred EEEEEcCC--CcEEEeeecCCCCCCCcceeEEEE---CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCC--
Q 008089 62 VHVFDTVN--QTWSQPVIKGSPPTPRDSHSCTTV---GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEA-- 134 (578)
Q Consensus 62 v~~yD~~t--~~W~~l~~~g~~P~~R~~hs~~~~---~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~-- 134 (578)
+++++... .+|..+.. .+....-++++.. .+.||+.+.. +. .-.-+++.+-...+|+.+......+..
T Consensus 33 l~~~~~~~~g~~W~~~~~---~~~~~~v~~i~~dp~~~~~l~~g~~~-g~-~g~gl~~s~D~G~tW~~~~~~~~~~~~~~ 107 (394)
T 3b7f_A 33 AWFLASDPARRTWELRGP---VFLGHTIHHIVQDPREPERMLMAART-GH-LGPTVFRSDDGGGNWTEATRPPAFNKAPE 107 (394)
T ss_dssp EEEEEECTTSCSEEEEEE---ESTTSEEEEEEECSSSTTCEEEEEEC----CCEEEEEESSTTSCCEECSBCCCCCCCC-
T ss_pred eEEEECCCCCCCceECCc---cCCCCceEEEEECCCCCCeEEEEecC-CC-CCccEEEeCCCCCCceECCccccCCCccc
Confidence 77787655 68987531 1112222333333 4578876532 10 112477776667889887532112211
Q ss_pred C-----ccc--EEEEE----CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCC--------------C
Q 008089 135 R-----EGH--SAALV----GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP--------------S 189 (578)
Q Consensus 135 R-----~~h--s~~~~----~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p--------------~ 189 (578)
+ ..+ +++.. .+.||+.+- ...+++.+-...+|+.+......| .
T Consensus 108 ~~~~~~~~~i~~l~~~~~~~~~~l~~g~~------------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~ 175 (394)
T 3b7f_A 108 GETGRVVDHVFWLTPGHASEPGTWYAGTS------------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPD 175 (394)
T ss_dssp ---CCCCCEEEEEEECCTTSTTCEEEEEE------------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CC
T ss_pred ccccccccceeEEEeCCCCCCCEEEEEec------------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCC
Confidence 1 111 23332 456776432 235778887888999885311111 1
Q ss_pred CCCceeEEEe---CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCC---CCCCC-----CceeEEEEeC---CEEE
Q 008089 190 ARDSHTCSSW---KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSG---MVLSP-----RAGHSTVAFG---KNLF 255 (578)
Q Consensus 190 ~R~~h~~~~~---~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g---~~p~~-----R~~hs~v~~~---~~iy 255 (578)
....+++++. .+.||+..+. ..+++.+-...+|+.+.... .+|.+ ...+.++... +.||
T Consensus 176 ~~~i~~i~~d~~~~~~l~vg~~~-------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~ 248 (394)
T 3b7f_A 176 GPKMHSILVDPRDPKHLYIGMSS-------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILY 248 (394)
T ss_dssp CCEEEEEEECTTCTTCEEEEEET-------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEE
T ss_pred CCceeEEEECCCCCCEEEEEECC-------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEE
Confidence 1222344433 3567765321 23777777788999885411 11211 2234444432 5566
Q ss_pred EEcCccCCCCccCcEEEEECCCCcEEEEEe
Q 008089 256 VFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 256 V~GG~~~~~~~~~dv~~ydi~t~~W~~l~~ 285 (578)
+-.+ ..|++.+-...+|+.+..
T Consensus 249 vg~~--------~gl~~s~D~G~tW~~~~~ 270 (394)
T 3b7f_A 249 QQNH--------CGIYRMDRREGVWKRIGD 270 (394)
T ss_dssp EEET--------TEEEEEETTTTEEECGGG
T ss_pred EEcC--------CeEEEeCCCCCcceECCC
Confidence 6321 348899888899998753
No 202
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=84.48 E-value=21 Score=35.10 Aligned_cols=146 Identities=14% Similarity=0.105 Sum_probs=75.3
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEE-EECCEEEEEccCCCCCCCCCceeeceEEEEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAA-LVGKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~-~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd 172 (578)
++.+|+.+-.. ..+++||+.+.+...... +. .-.+.+ .-++++|+... ..+++||
T Consensus 60 ~~~l~~~d~~~-----~~i~~~d~~~~~~~~~~~----~~--~v~~i~~~~dg~l~v~~~-------------~gl~~~d 115 (326)
T 2ghs_A 60 SGTAWWFNILE-----RELHELHLASGRKTVHAL----PF--MGSALAKISDSKQLIASD-------------DGLFLRD 115 (326)
T ss_dssp TTEEEEEEGGG-----TEEEEEETTTTEEEEEEC----SS--CEEEEEEEETTEEEEEET-------------TEEEEEE
T ss_pred CCEEEEEECCC-----CEEEEEECCCCcEEEEEC----CC--cceEEEEeCCCeEEEEEC-------------CCEEEEE
Confidence 35777776432 469999998887654431 11 112222 34678777532 2489999
Q ss_pred cCcceEEEeccCCC-CCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-
Q 008089 173 TETFVWKRATTSGN-PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF- 250 (578)
Q Consensus 173 ~~t~~W~~~~~~g~-~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~- 250 (578)
+.+.+++.+..... .+..+....++.-++++|+.............+++|| +.+...+... . . .....+..
T Consensus 116 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~--~--~-~~~~i~~s~ 188 (326)
T 2ghs_A 116 TATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD--I--S-IPNSICFSP 188 (326)
T ss_dssp TTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE--E--S-SEEEEEECT
T ss_pred CCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC--C--c-ccCCeEEcC
Confidence 99888876643211 1111111112222567776432111111235689998 4555544220 0 1 11223333
Q ss_pred CC-EEEEEcCccCCCCccCcEEEEECC
Q 008089 251 GK-NLFVFGGFTDSQNLYDDLYMIDVD 276 (578)
Q Consensus 251 ~~-~iyV~GG~~~~~~~~~dv~~ydi~ 276 (578)
++ .+|+.... .+.|++||+.
T Consensus 189 dg~~lyv~~~~------~~~I~~~d~~ 209 (326)
T 2ghs_A 189 DGTTGYFVDTK------VNRLMRVPLD 209 (326)
T ss_dssp TSCEEEEEETT------TCEEEEEEBC
T ss_pred CCCEEEEEECC------CCEEEEEEcc
Confidence 33 57776432 2469999975
No 203
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=84.43 E-value=27 Score=32.78 Aligned_cols=196 Identities=8% Similarity=-0.004 Sum_probs=99.5
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCC-CCCcceeEEEE-CCEEEEEcccCCCCCCCcEEE
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPP-TPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHI 114 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P-~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~ 114 (578)
.+++..++.||+.... ...+++||+. .++..+.. | ....-++++.. ++++|+.... ...+++
T Consensus 61 ~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~ 124 (299)
T 2z2n_A 61 CLTISSDGEVWFTENA------ANKIGRITKK-GIIKEYTL----PNPDSAPYGITEGPNGDIWFTEMN-----GNRIGR 124 (299)
T ss_dssp EEEECTTSCEEEEETT------TTEEEEECTT-SCEEEEEC----SSTTCCEEEEEECTTSCEEEEETT-----TTEEEE
T ss_pred eEEECCCCCEEEeCCC------CCeEEEECCC-CcEEEEeC----CCcCCCceeeEECCCCCEEEEecC-----CceEEE
Confidence 3444333457775432 1358899886 45554431 2 11222334333 5778887532 246899
Q ss_pred EECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCc
Q 008089 115 LDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (578)
Q Consensus 115 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~ 193 (578)
||+ +.+........ ....-+.++.. ++++|+.... ...+++||+ +.+......... ...-
T Consensus 125 ~d~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----------~~~i~~~~~-~g~~~~~~~~~~---~~~~ 185 (299)
T 2z2n_A 125 ITD-DGKIREYELPN---KGSYPSFITLGSDNALWFTENQ-----------NNAIGRITE-SGDITEFKIPTP---ASGP 185 (299)
T ss_dssp ECT-TCCEEEEECSS---TTCCEEEEEECTTSCEEEEETT-----------TTEEEEECT-TCCEEEEECSST---TCCE
T ss_pred ECC-CCCEEEecCCC---CCCCCceEEEcCCCCEEEEeCC-----------CCEEEEEcC-CCcEEEeeCCCC---CCcc
Confidence 998 55554432111 11122333433 4578875431 246888998 666665422111 1112
Q ss_pred eeEEEe-CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEE
Q 008089 194 HTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLY 271 (578)
Q Consensus 194 h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~ 271 (578)
..++.. ++.||+.... .+.+.+||+ +..+..+.... ....-.+++.. ++.+|+.... .+.|+
T Consensus 186 ~~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~------~~~i~ 249 (299)
T 2z2n_A 186 VGITKGNDDALWFVEII------GNKIGRITT-SGEITEFKIPT---PNARPHAITAGAGIDLWFTEWG------ANKIG 249 (299)
T ss_dssp EEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECSTTCEEEEETT------TTEEE
T ss_pred eeEEECCCCCEEEEccC------CceEEEECC-CCcEEEEECCC---CCCCceeEEECCCCCEEEeccC------CceEE
Confidence 233332 5678876432 245889999 77776653311 11112233332 4577776422 23589
Q ss_pred EEECCCCcEEEEE
Q 008089 272 MIDVDSGLWTKVI 284 (578)
Q Consensus 272 ~ydi~t~~W~~l~ 284 (578)
+||+ +.....+.
T Consensus 250 ~~d~-~g~~~~~~ 261 (299)
T 2z2n_A 250 RLTS-NNIIEEYP 261 (299)
T ss_dssp EEET-TTEEEEEE
T ss_pred EECC-CCceEEEe
Confidence 9998 45555443
No 204
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=84.37 E-value=51 Score=35.87 Aligned_cols=152 Identities=14% Similarity=0.010 Sum_probs=74.6
Q ss_pred eceEEEEEcCcceEEEeccCCCCCCCCCceeEEE--eCCEEEEEecCCCCCcccCceEEEECCCC-ceEEecCCCCCC-C
Q 008089 165 YNDLYILNTETFVWKRATTSGNPPSARDSHTCSS--WKNKIIVIGGEDGHDYYLSDVHILDTDTL-TWKELNTSGMVL-S 240 (578)
Q Consensus 165 ~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~--~~~~lyV~GG~~~~~~~~~di~~yD~~t~-~W~~v~~~g~~p-~ 240 (578)
...++++|+.+.....+... .........+. -+++.++++..+... ....++++|+.+. .+..+....... .
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~---~~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~v~~~d~~~g~~~~~~~~~~~~~~~ 309 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTG---EPKEKFLTNLSWSPDENILYVAEVNRAQ-NECKVNAYDAETGRFVRTLFVETDKHYV 309 (706)
T ss_dssp EEEEEEEETTTTEEEECCCC---SCTTCEEEEEEECTTSSEEEEEEECTTS-CEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred eeEEEEEECCCCceEeeccC---CCCceeEeeEEEECCCCEEEEEEeCCCC-CeeEEEEEECCCCceeeEEEEccCCCeE
Confidence 46799999998876655421 11111112222 256555554433221 2357999999988 666654211000 0
Q ss_pred CCceeEEEEe--CCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCC
Q 008089 241 PRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (578)
Q Consensus 241 ~R~~hs~v~~--~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (578)
......+..- ++++++.+...+ ...||.+|........+... .......+.....++.|++.+..+.
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g----~~~l~~~~~~~~~~~~l~~~------~~~v~~~~~~spdg~~l~~~~~~~~- 378 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDG----WNHLYLYDTTGRLIRQVTKG------EWEVTNFAGFDPKGTRLYFESTEAS- 378 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTS----SCEEEEEETTSCEEEECCCS------SSCEEEEEEECTTSSEEEEEESSSC-
T ss_pred CccCCceeecCCCCEEEEEEccCC----ccEEEEEECCCCEEEecCCC------CeEEEeeeEEcCCCCEEEEEecCCC-
Confidence 0001112333 567655554322 35689999777766665321 1112211111244556666554322
Q ss_pred CCccCcEEEEeccc
Q 008089 319 LEALDDMYYLYTGL 332 (578)
Q Consensus 319 ~~~~~d~~~l~~~~ 332 (578)
.....+|.++...
T Consensus 379 -~~~~~l~~~d~~~ 391 (706)
T 2z3z_A 379 -PLERHFYCIDIKG 391 (706)
T ss_dssp -TTCBEEEEEETTC
T ss_pred -CceEEEEEEEcCC
Confidence 1123677777543
No 205
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=83.85 E-value=27 Score=32.29 Aligned_cols=151 Identities=16% Similarity=0.230 Sum_probs=81.3
Q ss_pred eEEEECCEEEEEcccCCCCCCCcEEEEECCCC--eEEeccc---CCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCC
Q 008089 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSH--TWISPSV---RGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTND 161 (578)
Q Consensus 89 s~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~--~W~~l~~---~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~ 161 (578)
+++.+++++|+|=| +.+|+++.... ....... -..+|.. .. ++... ++++|+|-|
T Consensus 11 Ai~~~~g~~yfFkg-------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~-ID-Aa~~~~~~~~~yfFkG--------- 72 (195)
T 1itv_A 11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADKWPALPRK-LD-SVFEEPLSKKLFFFSG--------- 72 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS-CS-EEEECTTTCCEEEEET---------
T ss_pred EEEEeCCEEEEEEC-------CEEEEEECCccccCCCcEEhhhccCCCCCC-cc-EEEEECCCCeEEEEeC---------
Confidence 34557999999977 35888876542 2221111 1134432 22 22222 578999988
Q ss_pred ceeeceEEEEEcCcceE-EEeccCCCCCC--CCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceE-----Eec
Q 008089 162 EVYYNDLYILNTETFVW-KRATTSGNPPS--ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWK-----ELN 233 (578)
Q Consensus 162 ~~~~ndv~~yd~~t~~W-~~~~~~g~~p~--~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~-----~v~ 233 (578)
+..|+|+..+..- +.+...|- |. .....+....++++|+|-| +..|.||..+++-. .+.
T Consensus 73 ----~~yw~~~~~~~~~Pk~i~~~G~-p~~~~~iDAA~~~~~g~~yfFkg--------~~ywr~d~~~~~~~~gyPr~i~ 139 (195)
T 1itv_A 73 ----RQVWVYTGASVLGPRRLDKLGL-GADVAQVTGALRSGRGKMLLFSG--------RRLWRFDVKAQMVDPRSASEVD 139 (195)
T ss_dssp ----TEEEEEETTEEEEEEEGGGGTC-CTTCCCCCEEEECSTTEEEEEET--------TEEEEEETTTTEECGGGCEEHH
T ss_pred ----CEEEEEcCCccCCCEEeeeccc-CCCccceeEEEEcCCCeEEEEeC--------CEEEEEeCCcccccCCCccChh
Confidence 4467776543221 22322222 22 1233333333689999966 34789998765321 111
Q ss_pred CCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 234 TSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 234 ~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
. .-+..|..-.++...++.+|+|-|. ..|+||..+..
T Consensus 140 ~-~w~Gvp~~idaa~~~~g~~Yffkg~--------~y~~~~~~~~~ 176 (195)
T 1itv_A 140 R-MFPGVPLDTHDVFQFREKAYFCQDR--------FYWRVSSRSEL 176 (195)
T ss_dssp H-HSTTSCSSCSEEEEETTEEEEEETT--------EEEEEECCTTC
T ss_pred h-cCCCCCCCCCEEEEeCCeEEEEeCC--------EEEEEECCccE
Confidence 0 0011122334555667999999874 37899987765
No 206
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=83.56 E-value=27 Score=33.45 Aligned_cols=72 Identities=14% Similarity=0.205 Sum_probs=36.2
Q ss_pred CEEEEEecCCCCCcccCceEEEECCC--CceEEecCCCCCCCCCceeEEE-EeCCEEEEEcCccCCCCccCcEEEEECC-
Q 008089 201 NKIIVIGGEDGHDYYLSDVHILDTDT--LTWKELNTSGMVLSPRAGHSTV-AFGKNLFVFGGFTDSQNLYDDLYMIDVD- 276 (578)
Q Consensus 201 ~~lyV~GG~~~~~~~~~di~~yD~~t--~~W~~v~~~g~~p~~R~~hs~v-~~~~~iyV~GG~~~~~~~~~dv~~ydi~- 276 (578)
+.+++.|+.++. +.+||+.+ ..|....... ......-.++. .-++++++.||.+. .+.+|+..
T Consensus 219 ~~~las~s~D~~------v~iWd~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~las~~~D~------~v~lw~~~~ 285 (297)
T 2pm7_B 219 RSYMASVSQDRT------CIIWTQDNEQGPWKKTLLKE-EKFPDVLWRASWSLSGNVLALSGGDN------KVTLWKENL 285 (297)
T ss_dssp SEEEEEEETTSC------EEEEEESSTTSCCEEEESSS-SCCSSCEEEEEECSSSCCEEEEETTS------CEEEEEECT
T ss_pred ceEEEEEECCCc------EEEEEeCCCCCccceeeeec-ccCCCcEEEEEECCCCCEEEEEcCCC------cEEEEEECC
Confidence 377777776543 66777654 3455332210 01111122222 23566777777543 36677765
Q ss_pred CCcEEEEEe
Q 008089 277 SGLWTKVIT 285 (578)
Q Consensus 277 t~~W~~l~~ 285 (578)
.+.|..+..
T Consensus 286 ~g~w~~~~~ 294 (297)
T 2pm7_B 286 EGKWEPAGE 294 (297)
T ss_dssp TSCEEEC--
T ss_pred CCcEEeccc
Confidence 457887643
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=83.50 E-value=19 Score=34.75 Aligned_cols=151 Identities=12% Similarity=-0.009 Sum_probs=75.7
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd 172 (578)
++.||+..-. ...+++||+.+........ +. + -.+++.. ++++|+..+ ..+++||
T Consensus 24 ~~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~----~~-~-~~~i~~~~dG~l~v~~~-------------~~l~~~d 79 (297)
T 3g4e_A 24 SNSLLFVDIP-----AKKVCRWDSFTKQVQRVTM----DA-P-VSSVALRQSGGYVATIG-------------TKFCALN 79 (297)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTCCEEEEEC----SS-C-EEEEEEBTTSSEEEEET-------------TEEEEEE
T ss_pred CCEEEEEECC-----CCEEEEEECCCCcEEEEeC----CC-c-eEEEEECCCCCEEEEEC-------------CeEEEEE
Confidence 4678877643 2469999998876544331 11 1 1122322 456666422 4688999
Q ss_pred cCcceEEEeccCCC-CCCCCCceeEEEeCCEEEEEecCCCC-----CcccCceEEEECCCCceEEecCCCCCCCCCceeE
Q 008089 173 TETFVWKRATTSGN-PPSARDSHTCSSWKNKIIVIGGEDGH-----DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHS 246 (578)
Q Consensus 173 ~~t~~W~~~~~~g~-~p~~R~~h~~~~~~~~lyV~GG~~~~-----~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs 246 (578)
+.+.+++.+..... .+..+....++.-+++||+-.-.... ......++.+|+.. ....+... . ..-..
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~--~---~~png 153 (297)
T 3g4e_A 80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQ--V---DISNG 153 (297)
T ss_dssp TTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEE--E---SBEEE
T ss_pred CCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeec--c---ccccc
Confidence 99988877653211 11111122222236777763211110 01234688888763 33333210 1 11123
Q ss_pred EEEe--CCEEEEEcCccCCCCccCcEEEEEC--CCCcE
Q 008089 247 TVAF--GKNLFVFGGFTDSQNLYDDLYMIDV--DSGLW 280 (578)
Q Consensus 247 ~v~~--~~~iyV~GG~~~~~~~~~dv~~ydi--~t~~W 280 (578)
++.. ++.||+.... .+.|++||+ .++..
T Consensus 154 i~~spdg~~lyv~~~~------~~~i~~~~~d~~~G~~ 185 (297)
T 3g4e_A 154 LDWSLDHKIFYYIDSL------SYSVDAFDYDLQTGQI 185 (297)
T ss_dssp EEECTTSCEEEEEEGG------GTEEEEEEECTTTCCE
T ss_pred eEEcCCCCEEEEecCC------CCcEEEEeccCCCCcc
Confidence 3333 3457777543 245888886 55554
No 208
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=83.41 E-value=48 Score=34.84 Aligned_cols=142 Identities=13% Similarity=0.120 Sum_probs=73.8
Q ss_pred CEEEEEccc-CCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEE
Q 008089 95 ENLYVFGGT-DGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYIL 171 (578)
Q Consensus 95 ~kIYv~GG~-~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~y 171 (578)
++.++.|+. + ..+.+||..+..... . ...........+.+ ++++++.|+. ...+.+|
T Consensus 456 ~~~l~~~~~~d-----~~i~~~~~~~~~~~~-~---~~~~~~~~v~~~~~s~~g~~l~~~~~-----------dg~i~iw 515 (615)
T 1pgu_A 456 QNYVAVGLEEG-----NTIQVFKLSDLEVSF-D---LKTPLRAKPSYISISPSETYIAAGDV-----------MGKILLY 515 (615)
T ss_dssp SSEEEEEETTT-----SCEEEEETTEEEEEE-E---CSSCCSSCEEEEEECTTSSEEEEEET-----------TSCEEEE
T ss_pred CCEEEEeecCC-----CeEEEEECCCccccc-c---ccCCccCceEEEEECCCCCEEEEcCC-----------CCeEEEe
Confidence 556666664 3 358999998876542 1 11111112222333 5667777773 2457888
Q ss_pred EcCcceEEEeccCCCCCCCCCceeEEEe------------CCEEEEEecCCCCCcccCceEEEECCCC-c-eEEecCCCC
Q 008089 172 NTETFVWKRATTSGNPPSARDSHTCSSW------------KNKIIVIGGEDGHDYYLSDVHILDTDTL-T-WKELNTSGM 237 (578)
Q Consensus 172 d~~t~~W~~~~~~g~~p~~R~~h~~~~~------------~~~lyV~GG~~~~~~~~~di~~yD~~t~-~-W~~v~~~g~ 237 (578)
|+.+.+-...-. +. ....-.++.+ ++++++.|+.++ .+.+||+.+. . ...+..
T Consensus 516 ~~~~~~~~~~~~-~~---h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~--- 582 (615)
T 1pgu_A 516 DLQSREVKTSRW-AF---RTSKINAISWKPAEKGANEEEIEEDLVATGSLDT------NIFIYSVKRPMKIIKALNA--- 582 (615)
T ss_dssp ETTTTEEEECCS-CC---CSSCEEEEEECCCC------CCSCCEEEEEETTS------CEEEEESSCTTCCEEETTS---
T ss_pred eCCCCcceeEee-cC---CCCceeEEEEcCccccccccccCCCEEEEEcCCC------cEEEEECCCCceechhhhc---
Confidence 988765433211 00 1111222222 577888887653 4889998875 2 222211
Q ss_pred CCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCC
Q 008089 238 VLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (578)
Q Consensus 238 ~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t 277 (578)
........+..-++. ++.||.+. .|.+||+++
T Consensus 583 -h~~~v~~l~~s~~~~-l~s~~~d~------~v~iw~~~~ 614 (615)
T 1pgu_A 583 -HKDGVNNLLWETPST-LVSSGADA------CIKRWNVVL 614 (615)
T ss_dssp -STTCEEEEEEEETTE-EEEEETTS------CEEEEEEC-
T ss_pred -CccceEEEEEcCCCC-eEEecCCc------eEEEEeeec
Confidence 111222223445677 77777543 377777654
No 209
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=83.32 E-value=21 Score=38.72 Aligned_cols=170 Identities=14% Similarity=0.022 Sum_probs=90.3
Q ss_pred EEcCCCEEEEEcCCCCCCC--CcccEEEEEcC-CC---cEEEeeecCCCCCCCcceeEEE-ECCEEEEEcccCCCCCCCc
Q 008089 39 AIKGGRFLYVFGGYGKDNC--QTNQVHVFDTV-NQ---TWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRD 111 (578)
Q Consensus 39 ~v~~g~~Iyv~GG~~~~~~--~~~~v~~yD~~-t~---~W~~l~~~g~~P~~R~~hs~~~-~~~kIYv~GG~~~~~~~~~ 111 (578)
.-.+|++|++.. ...... ....++++|+. ++ ....+... . ...-...+. -++++|+.+..++ ...
T Consensus 195 ~SpDG~~la~~~-~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~---~-~~~~~~~~~spdg~l~~~~~~~~---~~~ 266 (662)
T 3azo_A 195 LSPDGRQAVWLA-WDHPRMPWEGTELKTARVTEDGRFADTRTLLGG---P-EEAIAQAEWAPDGSLIVATDRTG---WWN 266 (662)
T ss_dssp ECTTSSEEEEEE-ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE---T-TBCEEEEEECTTSCEEEEECTTS---SCE
T ss_pred ECCCCCEEEEEE-CCCCCCCCCCcEEEEEEECCCCcccccEEeCCC---C-CceEcceEECCCCeEEEEECCCC---CeE
Confidence 345666565444 322111 12579999998 56 44443311 0 111122222 2667777765543 247
Q ss_pred EEEEECCCCeEEecccCC-CCCCCCc---ccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCC
Q 008089 112 LHILDTSSHTWISPSVRG-EGPEARE---GHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 186 (578)
Q Consensus 112 v~~yD~~t~~W~~l~~~g-~~P~~R~---~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~ 186 (578)
+|++|+.+.++..+.... ..-.+.+ ....+.. ++++++.+.. -...+|.+|+.+...+.+...
T Consensus 267 l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~~d~~~~~~~~l~~~-- 334 (662)
T 3azo_A 267 LHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK----------GAAVLGILDPESGELVDAAGP-- 334 (662)
T ss_dssp EEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS----------SSCEEEEEETTTTEEEECCSS--
T ss_pred EEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc----------CccEEEEEECCCCcEEEecCC--
Confidence 999999888887754211 0101111 1223333 5666666541 135688889988887776421
Q ss_pred CCCCCCceeE-EEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecC
Q 008089 187 PPSARDSHTC-SSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT 234 (578)
Q Consensus 187 ~p~~R~~h~~-~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~ 234 (578)
. .....+ ...++.+++..+... ....+|.+|+.+.+.+.+..
T Consensus 335 --~-~~~~~~~s~~~~~~~~~~~~~~---~~~~i~~~d~~~g~~~~l~~ 377 (662)
T 3azo_A 335 --W-TEWAATLTVSGTRAVGVAASPR---TAYEVVELDTVTGRARTIGA 377 (662)
T ss_dssp --C-CEEEEEEEEETTEEEEEEEETT---EEEEEEEEETTTCCEEEEES
T ss_pred --C-CeEEEEEecCCCEEEEEEcCCC---CCCEEEEEECCCCceEEeec
Confidence 1 111222 334566665544321 23568999999888887754
No 210
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=82.84 E-value=29 Score=36.02 Aligned_cols=185 Identities=16% Similarity=0.292 Sum_probs=99.1
Q ss_pred CCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCC-----CeEEecccCCCCCCCCcccEEEEE
Q 008089 69 NQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSS-----HTWISPSVRGEGPEAREGHSAALV 143 (578)
Q Consensus 69 t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t-----~~W~~l~~~g~~P~~R~~hs~~~~ 143 (578)
...|+.-. .+.+|..-.-|+.+.+++.-|.+|=.++.-.-.++-.+-... .....-.+...........+.-.+
T Consensus 269 ~spW~~t~-L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY 347 (670)
T 3ju4_A 269 KSPWRKTD-LGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYY 347 (670)
T ss_dssp TSCCEEEE-CCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGGGCTTEEEEEEEEE
T ss_pred cCCceecc-cccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhh
Confidence 45676644 556677777899999998888888655544333433332211 011111111112222233455567
Q ss_pred CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCc---------
Q 008089 144 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDY--------- 214 (578)
Q Consensus 144 ~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~--------- 214 (578)
++.||+.--- ......-..+++-+.....|..+....+ .-....-.+..++.||+||-....+.
T Consensus 348 dgvLyLtTRg-----t~~~~~GS~L~rs~d~Gq~w~slrfp~n--vHhtnlPFakvgD~l~mFgsERA~nEWE~G~pD~R 420 (670)
T 3ju4_A 348 DGVLYLITRG-----TRGDRLGSSLHRSRDIGQTWESLRFPHN--VHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDR 420 (670)
T ss_dssp TTEEEEEEEE-----SCTTSCCCEEEEESSTTSSCEEEECTTC--CCSSCCCEEEETTEEEEEEECSSTTCSSTTCCCCC
T ss_pred CCEEEEEecC-----cCCCCCcceeeeecccCCchhheecccc--ccccCCCcceeCCEEEEEeccccccccccCCCccc
Confidence 9999997421 1122345678888888899998863211 01111235667999999997542211
Q ss_pred cc---Cc--eEEEE-----CCCCceEEecCC---CCCCCCCceeEEEEe-CCE-EEEEcCcc
Q 008089 215 YL---SD--VHILD-----TDTLTWKELNTS---GMVLSPRAGHSTVAF-GKN-LFVFGGFT 261 (578)
Q Consensus 215 ~~---~d--i~~yD-----~~t~~W~~v~~~---g~~p~~R~~hs~v~~-~~~-iyV~GG~~ 261 (578)
+- .. +...+ .+.-.|..+... |.....-.+...+++ ++- .|||||.+
T Consensus 421 Y~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd 482 (670)
T 3ju4_A 421 YKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGED 482 (670)
T ss_dssp SSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBC
T ss_pred ccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcc
Confidence 10 11 22223 344567776542 333334445555555 444 57899864
No 211
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=82.62 E-value=16 Score=40.13 Aligned_cols=148 Identities=16% Similarity=0.176 Sum_probs=73.2
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd 172 (578)
++++++.|+.++ .+.++|+.+..-...- .+. ...-.+++.. +++.++.|+.+ ..+.++|
T Consensus 441 ~g~~l~sgs~Dg-----~v~vwd~~~~~~~~~~-~~h---~~~v~~~~~s~~~~~l~s~s~D-----------~~i~iwd 500 (694)
T 3dm0_A 441 DGQFALSGSWDG-----ELRLWDLAAGVSTRRF-VGH---TKDVLSVAFSLDNRQIVSASRD-----------RTIKLWN 500 (694)
T ss_dssp TSSEEEEEETTS-----EEEEEETTTTEEEEEE-ECC---SSCEEEEEECTTSSCEEEEETT-----------SCEEEEC
T ss_pred CCCEEEEEeCCC-----cEEEEECCCCcceeEE-eCC---CCCEEEEEEeCCCCEEEEEeCC-----------CEEEEEE
Confidence 567777787653 5888998877543211 111 0111122222 35566666632 3456667
Q ss_pred cCcceEEEeccCCCCCCCCCceeEEEe--CC--EEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEE
Q 008089 173 TETFVWKRATTSGNPPSARDSHTCSSW--KN--KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV 248 (578)
Q Consensus 173 ~~t~~W~~~~~~g~~p~~R~~h~~~~~--~~--~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v 248 (578)
.....-..+.... ...+....++.+ ++ .+++.|+.++ .+.+||+.+..-...-. .....-.+++
T Consensus 501 ~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~d~------~v~vwd~~~~~~~~~~~----~h~~~v~~v~ 568 (694)
T 3dm0_A 501 TLGECKYTISEGG--EGHRDWVSCVRFSPNTLQPTIVSASWDK------TVKVWNLSNCKLRSTLA----GHTGYVSTVA 568 (694)
T ss_dssp TTSCEEEEECSST--TSCSSCEEEEEECSCSSSCEEEEEETTS------CEEEEETTTCCEEEEEC----CCSSCEEEEE
T ss_pred CCCCcceeeccCC--CCCCCcEEEEEEeCCCCcceEEEEeCCC------eEEEEECCCCcEEEEEc----CCCCCEEEEE
Confidence 6544322222111 111122233333 22 4666666543 38889988765443221 1111112222
Q ss_pred Ee-CCEEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 249 AF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 249 ~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
.. ++++++.||.+. .|.+||+.+..
T Consensus 569 ~spdg~~l~sg~~Dg------~i~iwd~~~~~ 594 (694)
T 3dm0_A 569 VSPDGSLCASGGKDG------VVLLWDLAEGK 594 (694)
T ss_dssp ECTTSSEEEEEETTS------BCEEEETTTTE
T ss_pred EeCCCCEEEEEeCCC------eEEEEECCCCc
Confidence 22 456777777543 48899998875
No 212
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=81.13 E-value=33 Score=36.13 Aligned_cols=156 Identities=12% Similarity=0.079 Sum_probs=80.4
Q ss_pred eEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccC---CCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCce
Q 008089 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVR---GEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEV 163 (578)
Q Consensus 89 s~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~---g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~ 163 (578)
+++.+.+.+|+|-|. .+|+++.....+....+. ..+|.. .. ++... ++++|+|=|
T Consensus 267 Ai~~~~ge~y~Fkg~-------~~wr~~~~~~~~~p~~I~~~Wp~LP~~-iD-Aa~~~~~~g~~~fFKg----------- 326 (450)
T 1su3_A 267 AITTIRGEVMFFKDR-------FYMRTNPFYPEVELNFISVFWPQLPNG-LE-AAYEFADRDEVRFFKG----------- 326 (450)
T ss_dssp EEEEETTEEEEEETT-------EEEECCTTSSSCEEEEGGGTCTTSCSS-CC-EEEEEGGGTEEEEEET-----------
T ss_pred eEEecCCeEEEEeCC-------EEEEEcCCCCcccceehhHhccCCCCC-ee-EEEEEcCCCeEEEEeC-----------
Confidence 455679999999873 467766544333211111 123332 12 22222 589999987
Q ss_pred eeceEEEEEcCcce--E-EEec-cCCCCCCCCCceeEEEe--CCEEEEEecCCCCCcccCceEEEECCCCceE-----Ee
Q 008089 164 YYNDLYILNTETFV--W-KRAT-TSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWK-----EL 232 (578)
Q Consensus 164 ~~ndv~~yd~~t~~--W-~~~~-~~g~~p~~R~~h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~-----~v 232 (578)
+.+|+|+..+.. + +.+. ..+-+..+..--++... ++++|+|=| +..|+||..+.+-. .+
T Consensus 327 --~~~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG--------~~yw~yd~~~~~~~~gYPk~I 396 (450)
T 1su3_A 327 --NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA--------NKYWRYDEYKRSMDPGYPKMI 396 (450)
T ss_dssp --TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCSEEH
T ss_pred --CEEEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC--------CEEEEEeCCCccccCCCCcch
Confidence 345666643210 0 1121 11211111112233333 589999966 35889987653211 11
Q ss_pred cCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEE
Q 008089 233 NTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (578)
Q Consensus 233 ~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l 283 (578)
.. +-+..+..--+++..++++|+|-|. ..|+||..+.+-..+
T Consensus 397 ~~-~fpgip~~iDAA~~~~g~~YFFkg~--------~ywr~d~~~~~v~~~ 438 (450)
T 1su3_A 397 AH-DFPGIGHKVDAVFMKDGFFYFFHGT--------RQYKFDPKTKRILTL 438 (450)
T ss_dssp HH-HSTTSCSCCSEEEEETTEEEEEETT--------EEEEEETTTTEEEEE
T ss_pred hh-cCCCCCCCccEEEEcCCeEEEEeCC--------EEEEEECCcceEecc
Confidence 10 0011222333455568899999774 389999888765543
No 213
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=81.04 E-value=50 Score=33.42 Aligned_cols=72 Identities=8% Similarity=-0.038 Sum_probs=40.2
Q ss_pred CCEEEEEecCCC---CCcccCceEEEECCCCce-EEecCCCCCCCCCceeEEEEe-CCE-EEEEcCccCCCCccCcEEEE
Q 008089 200 KNKIIVIGGEDG---HDYYLSDVHILDTDTLTW-KELNTSGMVLSPRAGHSTVAF-GKN-LFVFGGFTDSQNLYDDLYMI 273 (578)
Q Consensus 200 ~~~lyV~GG~~~---~~~~~~di~~yD~~t~~W-~~v~~~g~~p~~R~~hs~v~~-~~~-iyV~GG~~~~~~~~~dv~~y 273 (578)
++++||...... .....++++++|+++.+- ..+. .+..-+++... +++ +++.+... .++|.+|
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~------~g~~p~~i~~s~Dg~~~l~v~~~~-----~~~V~Vi 346 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS------LGHDVDAISVAQDGGPDLYALSAG-----TEVLHIY 346 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE------CCCCcCeEEECCCCCeEEEEEcCC-----CCeEEEE
Confidence 578898754211 112346899999988654 3332 22223343333 444 44444322 2569999
Q ss_pred ECCCCcEEE
Q 008089 274 DVDSGLWTK 282 (578)
Q Consensus 274 di~t~~W~~ 282 (578)
|..+.+-..
T Consensus 347 D~~t~~vv~ 355 (373)
T 2mad_H 347 DAGAGDQDQ 355 (373)
T ss_pred ECCCCCEEe
Confidence 998876443
No 214
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=80.92 E-value=42 Score=32.50 Aligned_cols=148 Identities=11% Similarity=0.187 Sum_probs=71.0
Q ss_pred EEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEEE
Q 008089 39 AIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILD 116 (578)
Q Consensus 39 ~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~yD 116 (578)
.+..+...++.|+.+ ..+.++|..+++-...- .+. ...-.++.+ ++.+++.|+.++ .+.+||
T Consensus 72 ~~s~dg~~l~s~s~D------~~v~~wd~~~~~~~~~~-~~h----~~~v~~~~~~~~~~~l~s~s~D~-----~i~vwd 135 (319)
T 3frx_A 72 TLTADGAYALSASWD------KTLRLWDVATGETYQRF-VGH----KSDVMSVDIDKKASMIISGSRDK-----TIKVWT 135 (319)
T ss_dssp EECTTSSEEEEEETT------SEEEEEETTTTEEEEEE-ECC----SSCEEEEEECTTSCEEEEEETTS-----CEEEEE
T ss_pred EECCCCCEEEEEeCC------CEEEEEECCCCCeeEEE-ccC----CCcEEEEEEcCCCCEEEEEeCCC-----eEEEEE
Confidence 333333355566643 35889999887643311 111 111112222 556777787654 377778
Q ss_pred CCCCeEEecccCCCCCCCCcccEEEEE-------CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCC
Q 008089 117 TSSHTWISPSVRGEGPEAREGHSAALV-------GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 189 (578)
Q Consensus 117 ~~t~~W~~l~~~g~~P~~R~~hs~~~~-------~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~ 189 (578)
+....-..+. +. ...-..+... ++.+++.||. ...+.++|+.+..-...-. +. .
T Consensus 136 ~~~~~~~~~~--~h---~~~v~~~~~~~~~~~~~~~~~l~s~~~-----------d~~i~~wd~~~~~~~~~~~-~h--~ 196 (319)
T 3frx_A 136 IKGQCLATLL--GH---NDWVSQVRVVPNEKADDDSVTIISAGN-----------DKMVKAWNLNQFQIEADFI-GH--N 196 (319)
T ss_dssp TTSCEEEEEC--CC---SSCEEEEEECCC------CCEEEEEET-----------TSCEEEEETTTTEEEEEEC-CC--C
T ss_pred CCCCeEEEEe--cc---CCcEEEEEEccCCCCCCCccEEEEEeC-----------CCEEEEEECCcchhheeec-CC--C
Confidence 7655433221 10 0011111221 1235555662 2346778887655432210 00 0
Q ss_pred CCCceeEEE-eCCEEEEEecCCCCCcccCceEEEECCCCc
Q 008089 190 ARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLT 228 (578)
Q Consensus 190 ~R~~h~~~~-~~~~lyV~GG~~~~~~~~~di~~yD~~t~~ 228 (578)
. .-.+++. .++++++.||.++ .+.+||+.+.+
T Consensus 197 ~-~v~~~~~sp~g~~l~s~~~dg------~i~iwd~~~~~ 229 (319)
T 3frx_A 197 S-NINTLTASPDGTLIASAGKDG------EIMLWNLAAKK 229 (319)
T ss_dssp S-CEEEEEECTTSSEEEEEETTC------EEEEEETTTTE
T ss_pred C-cEEEEEEcCCCCEEEEEeCCC------eEEEEECCCCc
Confidence 0 1112222 2677788887653 48889987764
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=80.83 E-value=61 Score=35.67 Aligned_cols=166 Identities=12% Similarity=0.066 Sum_probs=91.3
Q ss_pred EEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCC--cEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEE
Q 008089 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLH 113 (578)
Q Consensus 36 s~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~ 113 (578)
......++++|++...... ..+++|++|+.+. .|..+.. +...........++++|+....+. ....++
T Consensus 238 ~~~~SpDg~~l~~~~~~~~---~~~~i~~~d~~~~~~~~~~l~~----~~~~~~~~~~~~g~~l~~~t~~~~--~~~~l~ 308 (693)
T 3iuj_A 238 GATVTEDDRFLLISAANST---SGNRLYVKDLSQENAPLLTVQG----DLDADVSLVDNKGSTLYLLTNRDA--PNRRLV 308 (693)
T ss_dssp EEEECTTSCEEEEEEESSS---SCCEEEEEETTSTTCCCEEEEC----SSSSCEEEEEEETTEEEEEECTTC--TTCEEE
T ss_pred EEEEcCCCCEEEEEEccCC---CCcEEEEEECCCCCCceEEEeC----CCCceEEEEeccCCEEEEEECCCC--CCCEEE
Confidence 3344566776665543322 2368999998765 6777641 111112223455889999876543 345799
Q ss_pred EEECCCC---eEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCC
Q 008089 114 ILDTSSH---TWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSA 190 (578)
Q Consensus 114 ~yD~~t~---~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~ 190 (578)
.+|+.+. .|+.+... .... - +....++.|++..-. .-...++++|+.......+.. |..
T Consensus 309 ~~d~~~~~~~~~~~l~~~--~~~~--~-~~s~~g~~lv~~~~~---------~g~~~l~~~d~~g~~~~~l~~----p~~ 370 (693)
T 3iuj_A 309 TVDAANPGPAHWRDLIPE--RQQV--L-TVHSGSGYLFAEYMV---------DATARVEQFDYEGKRVREVAL----PGL 370 (693)
T ss_dssp EEETTSCCGGGCEEEECC--CSSC--E-EEEEETTEEEEEEEE---------TTEEEEEEECTTSCEEEEECC----SSS
T ss_pred EEeCCCCCccccEEEecC--CCCE--E-EEEEECCEEEEEEEE---------CCeeEEEEEECCCCeeEEeec----CCC
Confidence 9998764 37765421 1111 1 444556666554321 014578899998776666542 211
Q ss_pred CCceeEEE---eC-CEEEEE-ecCCCCCcccCceEEEECCCCceEEecC
Q 008089 191 RDSHTCSS---WK-NKIIVI-GGEDGHDYYLSDVHILDTDTLTWKELNT 234 (578)
Q Consensus 191 R~~h~~~~---~~-~~lyV~-GG~~~~~~~~~di~~yD~~t~~W~~v~~ 234 (578)
...... .+ +.|++. .+.. .-..++.||+.+..++.+..
T Consensus 371 --~~~~~~~~~~d~~~l~~~~ss~~----tP~~l~~~d~~~g~~~~l~~ 413 (693)
T 3iuj_A 371 --GSVSGFNGKHDDPALYFGFENYA----QPPTLYRFEPKSGAISLYRA 413 (693)
T ss_dssp --SEEEECCCCTTCSCEEEEEECSS----SCCEEEEECTTTCCEEEEEC
T ss_pred --ceEEeeecCCCCCEEEEEecCCC----CCCEEEEEECCCCeEEEEEe
Confidence 111111 12 334332 2222 23569999999988887765
No 216
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=80.34 E-value=17 Score=36.08 Aligned_cols=161 Identities=9% Similarity=-0.016 Sum_probs=70.9
Q ss_pred cccEEEEEcCCCcEEEeeecCCCCCC-CcceeEEEECCE-EEEEcccCCCCCCCcEEEEECCCCeEEecccCCCC---CC
Q 008089 59 TNQVHVFDTVNQTWSQPVIKGSPPTP-RDSHSCTTVGEN-LYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEG---PE 133 (578)
Q Consensus 59 ~~~v~~yD~~t~~W~~l~~~g~~P~~-R~~hs~~~~~~k-IYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~---P~ 133 (578)
...+|++|........+. ..... ...+-+..-+++ |+..+... ......++++|+.+.+-+.+...... ..
T Consensus 215 ~~~l~~~d~~~~~~~~l~---~~~~~~~~~~~~~spdg~~l~~~~~~~-~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 290 (388)
T 3pe7_A 215 DARMWLINEDGTNMRKVK---THAEGESCTHEFWVPDGSALVYVSYLK-GSPDRFIYSADPETLENRQLTSMPACSHLMS 290 (388)
T ss_dssp SCSEEEEETTSCCCEESC---CCCTTEEEEEEEECTTSSCEEEEEEET-TCCCEEEEEECTTTCCEEEEEEECCEEEEEE
T ss_pred cceEEEEeCCCCceEEee---eCCCCcccccceECCCCCEEEEEecCC-CCCcceEEEEecCCCceEEEEcCCCceeeee
Confidence 457999999877666643 11110 111111122454 43433222 22223599999998876554321100 00
Q ss_pred CCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCC-------CCCceeEEEeCCEEEEE
Q 008089 134 AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS-------ARDSHTCSSWKNKIIVI 206 (578)
Q Consensus 134 ~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~-------~R~~h~~~~~~~~lyV~ 206 (578)
...+......+..|++...... .....-...++++|+.+.....+........ ....+.+..-+++.++|
T Consensus 291 ~~~~~~~spdg~~l~~~~~~~~---~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~ 367 (388)
T 3pe7_A 291 NYDGSLMVGDGSDAPVDVQDDS---GYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILF 367 (388)
T ss_dssp CTTSSEEEEEECCC---------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred cCCCCeEccCCCcceeEeeecc---ccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEE
Confidence 0011122222333333210000 0000113579999999988777653211000 01222233345554444
Q ss_pred ecCCCCCcccCceEEEECCCCce
Q 008089 207 GGEDGHDYYLSDVHILDTDTLTW 229 (578)
Q Consensus 207 GG~~~~~~~~~di~~yD~~t~~W 229 (578)
...... ...+|.+|+....|
T Consensus 368 ~s~~~g---~~~l~~~~l~~~~~ 387 (388)
T 3pe7_A 368 TSDVHG---KPALYLATLPESVW 387 (388)
T ss_dssp EECTTS---SCEEEEEECCGGGG
T ss_pred EecCCC---ceeEEEEECChhcc
Confidence 433222 24589999887766
No 217
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=80.21 E-value=51 Score=33.16 Aligned_cols=111 Identities=12% Similarity=0.056 Sum_probs=57.2
Q ss_pred CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEe--CCEEEEEecCCCCCcccCceEE
Q 008089 144 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHI 221 (578)
Q Consensus 144 ~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~--~~~lyV~GG~~~~~~~~~di~~ 221 (578)
++.+++.|+. ...+.+||+.+.+-...-. . +.....-.++.+ ++.+++.|+.++ .+.+
T Consensus 181 ~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~--~-~~h~~~v~~~~~s~~~~~l~s~~~dg------~i~i 240 (437)
T 3gre_A 181 EKSLLVALTN-----------LSRVIIFDIRTLERLQIIE--N-SPRHGAVSSICIDEECCVLILGTTRG------IIDI 240 (437)
T ss_dssp SCEEEEEEET-----------TSEEEEEETTTCCEEEEEE--C-CGGGCCEEEEEECTTSCEEEEEETTS------CEEE
T ss_pred CCCEEEEEeC-----------CCeEEEEeCCCCeeeEEEc--c-CCCCCceEEEEECCCCCEEEEEcCCC------eEEE
Confidence 3667777773 2467888987765432211 0 100111222223 677788887653 3889
Q ss_pred EECCCCceEEecCCCCCCCCCceeEEEEe-----CCEEEEEcCccCCCCccCcEEEEECCCCcEEEE
Q 008089 222 LDTDTLTWKELNTSGMVLSPRAGHSTVAF-----GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (578)
Q Consensus 222 yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-----~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l 283 (578)
||+.+......-. .+....-.+++.. ++.+++.|+.+ ..|.+||+.+..-...
T Consensus 241 wd~~~~~~~~~~~---~~~~~~v~~~~~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~~~ 298 (437)
T 3gre_A 241 WDIRFNVLIRSWS---FGDHAPITHVEVCQFYGKNSVIVVGGSSK------TFLTIWNFVKGHCQYA 298 (437)
T ss_dssp EETTTTEEEEEEB---CTTCEEEEEEEECTTTCTTEEEEEEESTT------EEEEEEETTTTEEEEE
T ss_pred EEcCCccEEEEEe---cCCCCceEEEEeccccCCCccEEEEEcCC------CcEEEEEcCCCcEEEE
Confidence 9998765433221 1111111112111 23456666543 2489999988764433
No 218
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=79.97 E-value=21 Score=39.13 Aligned_cols=64 Identities=13% Similarity=0.019 Sum_probs=33.6
Q ss_pred ceEEEEEcCcceE-EEeccCCCCCCC-CCceeEE--EeCCEEEEEecCCCCCcccCceEEEECCCCceEEe
Q 008089 166 NDLYILNTETFVW-KRATTSGNPPSA-RDSHTCS--SWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL 232 (578)
Q Consensus 166 ndv~~yd~~t~~W-~~~~~~g~~p~~-R~~h~~~--~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v 232 (578)
..++++|+.+.+- ..+... ..+.. ......+ .-+++++++...... ....++++|+.+.+...+
T Consensus 228 ~~l~~~d~~~~~~~~~l~~~-~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~--~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 228 ISLHVIGLNGPTHDLEMMPP-DDPRMREYYITMVKWATSTKVAVTWLNRAQ--NVSILTLCDATTGVCTKK 295 (723)
T ss_dssp EEEEEEESSSSCCCEECCCC-CCGGGSSEEEEEEEESSSSEEEEEEEETTS--CEEEEEEEETTTCCEEEE
T ss_pred eEEEEEECCCCceeEEeeCC-ccCCCccceeEEEEEeCCCeEEEEEEcCCC--CeEEEEEEeCCCCcceEE
Confidence 4788999887763 444311 00000 1111112 236776655533221 235689999988876655
No 219
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=79.71 E-value=41 Score=31.63 Aligned_cols=147 Identities=13% Similarity=0.147 Sum_probs=74.2
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCCc-EEEeeec---CCCCCCCcceeEEE-ECCEEEEEcccCCCCCCCcEEEEEC
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQT-WSQPVIK---GSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRDLHILDT 117 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~-W~~l~~~---g~~P~~R~~hs~~~-~~~kIYv~GG~~~~~~~~~v~~yD~ 117 (578)
++.+|+|=| +.+|+++..... .....+. +.+|. ....+... .++++|+|-| +..|+||-
T Consensus 40 ~g~~~fFkg--------~~~Wr~~~~~~~~~~P~~I~~~wp~lp~-~IDAA~~~~~~~k~yfFkG-------~~yW~y~~ 103 (218)
T 1gen_A 40 RGEIFFFKD--------RFIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG-------NEYWIYSA 103 (218)
T ss_dssp TTEEEEEET--------TEEEEESSTTSCCEEEEEGGGTCTTSCS-CCSEEEEETTTTEEEEEET-------TEEEEEET
T ss_pred CCcEEEEEC--------CEEEEEeCCCCccCCCEEHHHhcCCCCC-CccEEEEECCCCEEEEEeC-------CEEEEEcC
Confidence 456999977 357777655422 2211111 12232 22222222 2689999977 46999985
Q ss_pred CCCe--E-EecccCCCCCCCC-cccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEE-----EeccCCC
Q 008089 118 SSHT--W-ISPSVRGEGPEAR-EGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-----RATTSGN 186 (578)
Q Consensus 118 ~t~~--W-~~l~~~g~~P~~R-~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~-----~~~~~g~ 186 (578)
.+.. + ..+...| .|... .-.++... ++++|+|-| +..|+||..+..-. .+.. .-
T Consensus 104 ~~~~~gyPk~I~~~g-~p~~~~~IDAAf~~~~~g~~YfFkG-------------~~ywr~d~~~~~v~~gyPr~i~~-~w 168 (218)
T 1gen_A 104 STLERGYPKPLTSLG-LPPDVQRVDAAFNWSKNKKTYIFAG-------------DKFWRYNEVKKKMDPGFPKLIAD-AW 168 (218)
T ss_dssp TEECTTCSEEGGGGT-CCTTCCCCSEEEEETTTTEEEEEET-------------TEEEEEETTTTEECSSCCEEHHH-HS
T ss_pred ccccCCCCccHhhcC-CCCCcCCccEEEEEcCCCeEEEEEC-------------CEEEEEECccccccCCCCcchhh-cc
Confidence 3110 0 1111111 22211 12233332 579999988 45788998765322 1110 01
Q ss_pred CCCCCCceeEEEeC--CEEEEEecCCCCCcccCceEEEECCCCc
Q 008089 187 PPSARDSHTCSSWK--NKIIVIGGEDGHDYYLSDVHILDTDTLT 228 (578)
Q Consensus 187 ~p~~R~~h~~~~~~--~~lyV~GG~~~~~~~~~di~~yD~~t~~ 228 (578)
+..+..-.++...+ +.+|+|-| +..|.||..+..
T Consensus 169 ~g~p~~idaAf~~~~~g~~YfFkg--------~~y~~~~~~~~~ 204 (218)
T 1gen_A 169 NAIPDNLDAVVDLQGGGHSYFFKG--------AYYLKLENQSLK 204 (218)
T ss_dssp SSCCSSCSEEEECTTTCEEEEEET--------TEEEEEETTEEE
T ss_pred CCCCCCCCEEEEEcCCCcEEEEEC--------CEEEEEECCcee
Confidence 12223334555554 89999966 347778875543
No 220
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=78.96 E-value=50 Score=32.22 Aligned_cols=68 Identities=9% Similarity=0.154 Sum_probs=34.4
Q ss_pred EEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEE-ECCEEEEEcccCCCCCCCcEEEEE
Q 008089 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRDLHILD 116 (578)
Q Consensus 38 v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~kIYv~GG~~~~~~~~~v~~yD 116 (578)
+.+..++.+++.|+.+ ..+.++|..+.+....- .+. . ..-.+++. -+++.++.||.++ .+.+||
T Consensus 82 ~~~~~~~~~l~s~s~D------~~v~lwd~~~~~~~~~~-~~h-~--~~v~~v~~sp~~~~l~s~~~d~-----~i~~wd 146 (343)
T 2xzm_R 82 LALSQENCFAISSSWD------KTLRLWDLRTGTTYKRF-VGH-Q--SEVYSVAFSPDNRQILSAGAER-----EIKLWN 146 (343)
T ss_dssp EEECSSTTEEEEEETT------SEEEEEETTSSCEEEEE-ECC-C--SCEEEEEECSSTTEEEEEETTS-----CEEEEE
T ss_pred EEECCCCCEEEEEcCC------CcEEEEECCCCcEEEEE-cCC-C--CcEEEEEECCCCCEEEEEcCCC-----EEEEEe
Confidence 3443333355566643 35888998877643311 111 1 11112222 2556667777653 477788
Q ss_pred CCCC
Q 008089 117 TSSH 120 (578)
Q Consensus 117 ~~t~ 120 (578)
+...
T Consensus 147 ~~~~ 150 (343)
T 2xzm_R 147 ILGE 150 (343)
T ss_dssp SSSC
T ss_pred ccCC
Confidence 7644
No 221
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=78.89 E-value=77 Score=34.31 Aligned_cols=124 Identities=19% Similarity=0.206 Sum_probs=66.2
Q ss_pred eEEEECCEEEEEcccCCCCCCCcEEEEECCCC--eEEecccCCCCCCCC---cccEEEEECCEEEEEccCCCCCCCCCce
Q 008089 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSH--TWISPSVRGEGPEAR---EGHSAALVGKRLFIFGGCGKSSNTNDEV 163 (578)
Q Consensus 89 s~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~P~~R---~~hs~~~~~~~lyvfGG~~~~~~~~~~~ 163 (578)
+-++.+++||+.+.. +.++.+|..+. .|+..........+. ...+.++.+++||+...
T Consensus 63 ~P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~----------- 125 (582)
T 1flg_A 63 QAIVSDGVIYVTASY------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL----------- 125 (582)
T ss_dssp CCEEETTEEEEEETT------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-----------
T ss_pred ccEEECCEEEEEcCC------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-----------
Confidence 345679999998753 24999999875 487632111100011 11334567888888532
Q ss_pred eeceEEEEEcCcc--eEEEeccCCCCCCCCCceeEEEeCC------EEEEEecCCCCCcccCceEEEECCCCc--eEEe
Q 008089 164 YYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKN------KIIVIGGEDGHDYYLSDVHILDTDTLT--WKEL 232 (578)
Q Consensus 164 ~~ndv~~yd~~t~--~W~~~~~~g~~p~~R~~h~~~~~~~------~lyV~GG~~~~~~~~~di~~yD~~t~~--W~~v 232 (578)
...++.+|..+. .|+.-..... .......+-++.++ .+|+ |...........++.||.++.+ |+.-
T Consensus 126 -dg~l~AlD~~TG~~~W~~~~~~~~-~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 126 -DASVVALNKNTGKVVWKKKFADHG-AGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp -TTEEEEEESSSCCEEEEEECSCGG-GTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred -CCEEEEEECCCCCEEeeecCCCCC-cCcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeecC
Confidence 246889998876 4875431100 00001112233445 5544 4322111124569999988654 8653
No 222
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=78.70 E-value=53 Score=32.34 Aligned_cols=198 Identities=12% Similarity=0.144 Sum_probs=99.1
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEE-ECCEEEEEcccCCCCCCCcEEEE
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRDLHIL 115 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~kIYv~GG~~~~~~~~~v~~y 115 (578)
.+.+.+ +.+|+.|-. ..+++-+-.-.+|..+......|. ..+.++. -++.+|+.|.. ..+++-
T Consensus 84 ~i~~~~-~~~~~~g~~-------g~i~~S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~------g~v~~S 147 (327)
T 2xbg_A 84 SVSFQG-NEGWIVGEP-------PIMLHTTDGGQSWSQIPLDPKLPG--SPRLIKALGNGSAEMITNV------GAIYRT 147 (327)
T ss_dssp EEEEET-TEEEEEEET-------TEEEEESSTTSSCEECCCCTTCSS--CEEEEEEEETTEEEEEETT------CCEEEE
T ss_pred EEEecC-CeEEEEECC-------CeEEEECCCCCCceECccccCCCC--CeEEEEEECCCCEEEEeCC------ccEEEE
Confidence 344443 567776531 234443333568998652211221 1233333 36788887742 135554
Q ss_pred ECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcC-cceEEEeccCCCCCCCCCc
Q 008089 116 DTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTE-TFVWKRATTSGNPPSARDS 193 (578)
Q Consensus 116 D~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~-t~~W~~~~~~g~~p~~R~~ 193 (578)
.-.-.+|+.+.. +.+...++++.. ++.+|++|-. ..+++-+-. ..+|+.+.. +.....
T Consensus 148 ~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~------------G~~~~S~d~gG~tW~~~~~----~~~~~~ 207 (327)
T 2xbg_A 148 KDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSR------------GSFYSTWEPGQTAWEPHNR----TTSRRL 207 (327)
T ss_dssp SSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEETT------------SSEEEEECTTCSSCEEEEC----CSSSCE
T ss_pred cCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEECC------------CcEEEEeCCCCCceeECCC----CCCCcc
Confidence 334567988752 222233444443 3566665531 124444333 578998852 233444
Q ss_pred eeEEEe-CCEEEEEecCCCCCcccCceEEEECC-CCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcE
Q 008089 194 HTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTD-TLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDL 270 (578)
Q Consensus 194 h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~~-t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv 270 (578)
+.++.. ++.+|+.+.. ..+++.+.. ..+|+.+... ..+.....+.++.. ++.+|+.|+.. .+
T Consensus 208 ~~~~~~~~g~~~~~~~~-------G~~~~s~~D~G~tW~~~~~~-~~~~~~~~~~v~~~~~~~~~~~g~~g-------~i 272 (327)
T 2xbg_A 208 HNMGFTPDGRLWMIVNG-------GKIAFSDPDNSENWGELLSP-LRRNSVGFLDLAYRTPNEVWLAGGAG-------AL 272 (327)
T ss_dssp EEEEECTTSCEEEEETT-------TEEEEEETTEEEEECCCBCT-TSSCCSCEEEEEESSSSCEEEEESTT-------CE
T ss_pred ceeEECCCCCEEEEeCC-------ceEEEecCCCCCeeEeccCC-cccCCcceEEEEecCCCEEEEEeCCC-------eE
Confidence 444443 5678877631 124444333 5679887541 01222223333333 46788887631 25
Q ss_pred EEEECCCCcEEEEEe
Q 008089 271 YMIDVDSGLWTKVIT 285 (578)
Q Consensus 271 ~~ydi~t~~W~~l~~ 285 (578)
++-.-...+|+.+..
T Consensus 273 ~~S~DgG~tW~~~~~ 287 (327)
T 2xbg_A 273 LCSQDGGQTWQQDVD 287 (327)
T ss_dssp EEESSTTSSCEECGG
T ss_pred EEeCCCCcccEEcCc
Confidence 444334568998753
No 223
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=77.97 E-value=12 Score=36.44 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=17.8
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWI 123 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~ 123 (578)
++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 179 ~~~~l~~~~~d-----~~i~i~d~~~~~~~ 203 (357)
T 3i2n_A 179 EERVVCAGYDN-----GDIKLFDLRNMALR 203 (357)
T ss_dssp CCCEEEEEETT-----SEEEEEETTTTEEE
T ss_pred CCCEEEEEccC-----CeEEEEECccCcee
Confidence 56677777654 35899999887653
No 224
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=77.18 E-value=40 Score=32.62 Aligned_cols=31 Identities=13% Similarity=0.328 Sum_probs=20.4
Q ss_pred CCEEEEEcCccCCCCccCcEEEEECC-CCcEEEEEeCC
Q 008089 251 GKNLFVFGGFTDSQNLYDDLYMIDVD-SGLWTKVITTG 287 (578)
Q Consensus 251 ~~~iyV~GG~~~~~~~~~dv~~ydi~-t~~W~~l~~~~ 287 (578)
++.+++.||.+. .+.+|+.. .+.|..+....
T Consensus 273 ~g~~las~~~D~------~v~lw~~~~~g~~~~~~~~~ 304 (316)
T 3bg1_A 273 TANILAVSGGDN------KVTLWKESVDGQWVCISDVN 304 (316)
T ss_dssp TTCCEEEEESSS------CEEEEEECTTSCEEEEEECC
T ss_pred CCCEEEEEcCCC------eEEEEEECCCCcEEEeeecc
Confidence 456777777543 37777765 56798887653
No 225
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=76.99 E-value=42 Score=35.68 Aligned_cols=96 Identities=10% Similarity=-0.022 Sum_probs=54.1
Q ss_pred EEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEE
Q 008089 169 YILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV 248 (578)
Q Consensus 169 ~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v 248 (578)
.+||+.+...+.+... +. ......-+++.+++++.+..+ ...++++|+.+..++.+... .......+
T Consensus 135 ~l~d~~~g~~~~l~~~---~~---~~~~~spDG~~la~~~~~~~~--~~~i~~~d~~~g~~~~l~~~-----~~~~~~~~ 201 (582)
T 3o4h_A 135 ALYALDGGGLRELARL---PG---FGFVSDIRGDLIAGLGFFGGG--RVSLFTSNLSSGGLRVFDSG-----EGSFSSAS 201 (582)
T ss_dssp EEEEEETTEEEEEEEE---SS---CEEEEEEETTEEEEEEEEETT--EEEEEEEETTTCCCEEECCS-----SCEEEEEE
T ss_pred eEEEccCCcEEEeecC---CC---ceEEECCCCCEEEEEEEcCCC--CeEEEEEcCCCCCceEeecC-----CCccccce
Confidence 3678888877766531 11 222333466666665544322 23599999999988877431 11112222
Q ss_pred -EeCCEEEEEcCccCCCCccCcEEEEECCCCcEE
Q 008089 249 -AFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (578)
Q Consensus 249 -~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~ 281 (578)
.-+++.++.+.... ...|+++|++++...
T Consensus 202 ~SpDG~~l~~~~~~~----~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 202 ISPGMKVTAGLETAR----EARLVTVDPRDGSVE 231 (582)
T ss_dssp ECTTSCEEEEEECSS----CEEEEEECTTTCCEE
T ss_pred ECCCCCEEEEccCCC----eeEEEEEcCCCCcEE
Confidence 22444444322211 246999999999877
No 226
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=76.25 E-value=60 Score=31.69 Aligned_cols=155 Identities=10% Similarity=0.030 Sum_probs=78.3
Q ss_pred eEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEE
Q 008089 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHI 114 (578)
Q Consensus 35 hs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~ 114 (578)
...+...+++.+|+++.. ...+++||+.++....+.. +. ....-+..-++++|+... +.+++
T Consensus 52 egp~~~~~~~~l~~~d~~------~~~i~~~d~~~~~~~~~~~----~~-~v~~i~~~~dg~l~v~~~-------~gl~~ 113 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNIL------ERELHELHLASGRKTVHAL----PF-MGSALAKISDSKQLIASD-------DGLFL 113 (326)
T ss_dssp EEEEEETTTTEEEEEEGG------GTEEEEEETTTTEEEEEEC----SS-CEEEEEEEETTEEEEEET-------TEEEE
T ss_pred cCCeEeCCCCEEEEEECC------CCEEEEEECCCCcEEEEEC----CC-cceEEEEeCCCeEEEEEC-------CCEEE
Confidence 344445555678877643 2469999999887665431 11 111122234778877642 35999
Q ss_pred EECCCCeEEecccCCC-CCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCc
Q 008089 115 LDTSSHTWISPSVRGE-GPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (578)
Q Consensus 115 yD~~t~~W~~l~~~g~-~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~ 193 (578)
||+.+.++..+..... .+..+....++.-++++|+- ..... .......+|+++ +.+...+..... ..
T Consensus 114 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~-~~~~~----~~~~~~~l~~~~--~g~~~~~~~~~~-----~~ 181 (326)
T 2ghs_A 114 RDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIG-TMGRK----AETGAGSIYHVA--KGKVTKLFADIS-----IP 181 (326)
T ss_dssp EETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEE-EEETT----CCTTCEEEEEEE--TTEEEEEEEEES-----SE
T ss_pred EECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEE-eCCCc----CCCCceEEEEEe--CCcEEEeeCCCc-----cc
Confidence 9999888765532111 11111111112224677763 21110 111235788998 455554421100 11
Q ss_pred eeEEEe-CC-EEEEEecCCCCCcccCceEEEECC
Q 008089 194 HTCSSW-KN-KIIVIGGEDGHDYYLSDVHILDTD 225 (578)
Q Consensus 194 h~~~~~-~~-~lyV~GG~~~~~~~~~di~~yD~~ 225 (578)
...+.. ++ .+|+.... .+.|++||..
T Consensus 182 ~~i~~s~dg~~lyv~~~~------~~~I~~~d~~ 209 (326)
T 2ghs_A 182 NSICFSPDGTTGYFVDTK------VNRLMRVPLD 209 (326)
T ss_dssp EEEEECTTSCEEEEEETT------TCEEEEEEBC
T ss_pred CCeEEcCCCCEEEEEECC------CCEEEEEEcc
Confidence 222322 34 57776432 2468899875
No 227
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=75.90 E-value=16 Score=37.46 Aligned_cols=62 Identities=10% Similarity=0.085 Sum_probs=33.4
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCc----eEEecCCCCCCCCCceeEEEEe--CCEEEEEcCccCCCCccCcEEEE
Q 008089 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLT----WKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMI 273 (578)
Q Consensus 200 ~~~lyV~GG~~~~~~~~~di~~yD~~t~~----W~~v~~~g~~p~~R~~hs~v~~--~~~iyV~GG~~~~~~~~~dv~~y 273 (578)
++.+++.|+.+ ..|.+||+.+.. -..+.. ....-.++... +..+++.|+.++ .|.+|
T Consensus 243 ~~~~l~s~~~d------g~i~i~d~~~~~~~~~~~~~~~-----~~~~v~~i~~~p~~~~~l~tg~~dg------~v~vw 305 (430)
T 2xyi_A 243 HESLFGSVADD------QKLMIWDTRNNNTSKPSHTVDA-----HTAEVNCLSFNPYSEFILATGSADK------TVALW 305 (430)
T ss_dssp CTTEEEEEETT------SEEEEEETTCSCSSSCSEEEEC-----CSSCEEEEEECSSCTTEEEEEETTS------EEEEE
T ss_pred CCCEEEEEeCC------CeEEEEECCCCCCCcceeEeec-----CCCCeEEEEeCCCCCCEEEEEeCCC------eEEEE
Confidence 45677777644 348889987642 111111 11111122222 234788887643 48899
Q ss_pred ECCCC
Q 008089 274 DVDSG 278 (578)
Q Consensus 274 di~t~ 278 (578)
|+.+.
T Consensus 306 d~~~~ 310 (430)
T 2xyi_A 306 DLRNL 310 (430)
T ss_dssp ETTCT
T ss_pred eCCCC
Confidence 98863
No 228
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=75.81 E-value=21 Score=33.15 Aligned_cols=147 Identities=12% Similarity=0.080 Sum_probs=74.5
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCC--cE-EEeee-cCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECC
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TW-SQPVI-KGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTS 118 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~--~W-~~l~~-~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~ 118 (578)
++.+|+|-| +.+|+++.... .. ..+.. -..+|. ....+....++++|+|-| +.+|+|+..
T Consensus 15 ~g~~~fFkg--------~~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg-------~~yw~~~~~ 78 (196)
T 3c7x_A 15 RGEMFVFKE--------RWFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKG-------DKHWVFDEA 78 (196)
T ss_dssp TTEEEEEET--------TEEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEET-------TEEEEEETT
T ss_pred CCEEEEEEC--------CEEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecC-------CEEEEEeCC
Confidence 346999977 45788864310 00 11110 012343 222222224788999977 468999854
Q ss_pred CCeE---EecccCC-CCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEE-----EeccCCCCC
Q 008089 119 SHTW---ISPSVRG-EGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-----RATTSGNPP 188 (578)
Q Consensus 119 t~~W---~~l~~~g-~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~-----~~~~~g~~p 188 (578)
+... ..+...+ .+|......+.... ++++|+|-| +..|+||..+.+-. .+..- +.
T Consensus 79 ~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG-------------~~yw~yd~~~~~v~~gyPk~i~~~--~g 143 (196)
T 3c7x_A 79 SLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG-------------NKYYRFNEELRAVDSEYPKNIKVW--EG 143 (196)
T ss_dssp EECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEET-------------TEEEEEETTTTEECTTCSEEGGGS--BT
T ss_pred cccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEEC-------------CEEEEEeCCcccccCCCCccHHHC--CC
Confidence 2111 1122111 13322223222222 589999988 45788998765322 11111 11
Q ss_pred CCCCceeEEEe-CC-EEEEEecCCCCCcccCceEEEECCCCc
Q 008089 189 SARDSHTCSSW-KN-KIIVIGGEDGHDYYLSDVHILDTDTLT 228 (578)
Q Consensus 189 ~~R~~h~~~~~-~~-~lyV~GG~~~~~~~~~di~~yD~~t~~ 228 (578)
.+..-.++... ++ ++|+|-| +..|.||..+.+
T Consensus 144 ip~~idaAf~~~~~~~~YfFkg--------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 144 IPESPRGSFMGSDEVFTYFYKG--------NKYWKFNNQKLK 177 (196)
T ss_dssp CCSSCSEEEECTTSSEEEEEET--------TEEEEEETTTTE
T ss_pred cCCCcceeEEecCCCEEEEEEC--------CEEEEEECCcce
Confidence 12222344444 44 8999966 347889987654
No 229
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=75.57 E-value=62 Score=31.51 Aligned_cols=160 Identities=14% Similarity=0.109 Sum_probs=83.2
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCC----CCC-CcccEEEEE-C-CEEEEEccCCCCCCCCCceeec
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEG----PEA-REGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYN 166 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~----P~~-R~~hs~~~~-~-~~lyvfGG~~~~~~~~~~~~~n 166 (578)
++.||+..++. .+.+.+||............+.. +.. ..-+++++. + +.|||.... .+
T Consensus 154 ~g~lyv~d~~~----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-----------~~ 218 (329)
T 3fvz_A 154 TGAVFVSDGYC----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-----------NG 218 (329)
T ss_dssp TCCEEEEECSS----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-----------TT
T ss_pred CCeEEEEeCCC----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-----------CC
Confidence 57899997521 24689999654443333222211 111 112345554 3 789998652 35
Q ss_pred eEEEEEcCcceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCC-CcccCceEEEECCCCceEEecCCCCCCCCCcee
Q 008089 167 DLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGH-DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGH 245 (578)
Q Consensus 167 dv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~-~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~h 245 (578)
.+.+||+.+.+....-.. ......-.+++...+.+|+..|...- ......+.++|+.+.+....-..+ ......-+
T Consensus 219 ~I~~~~~~~G~~~~~~~~--~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~-~~~~~~p~ 295 (329)
T 3fvz_A 219 RIQCFKTDTKEFVREIKH--ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV-RKHFDMPH 295 (329)
T ss_dssp EEEEEETTTCCEEEEECC--TTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS-SSCCSSEE
T ss_pred EEEEEECCCCcEEEEEec--cccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC-CCccCCee
Confidence 688999986655433211 11112222333445777777764321 112346899998877665542211 01111222
Q ss_pred EEEEe-CCEEEEEcCccCCCCccCcEEEEECCC
Q 008089 246 STVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (578)
Q Consensus 246 s~v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t 277 (578)
.+++. ++.|||....+ +.|++|++..
T Consensus 296 ~ia~~~dG~lyvad~~~------~~I~~~~~~~ 322 (329)
T 3fvz_A 296 DIVASEDGTVYIGDAHT------NTVWKFTLTE 322 (329)
T ss_dssp EEEECTTSEEEEEESSS------CCEEEEEEEE
T ss_pred EEEECCCCCEEEEECCC------CEEEEEeCCc
Confidence 33333 45788876543 3588887653
No 230
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=75.53 E-value=13 Score=35.90 Aligned_cols=135 Identities=18% Similarity=0.272 Sum_probs=65.6
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCC-eEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSH-TWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~-~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd 172 (578)
++.||+... + +++||.... .|... .+... ....++.++.||+... ...+++||
T Consensus 70 ~g~l~v~t~-------~-l~~~d~~g~~~~~~~-----~~~~~-~~~~~~~~~~l~v~t~------------~~~l~~~d 123 (330)
T 3hxj_A 70 DGTIYFGSD-------K-VYAINPDGTEKWRFD-----TKKAI-VSDFTIFEDILYVTSM------------DGHLYAIN 123 (330)
T ss_dssp TTEECCSSC-------E-EEEECCCGGGGGGSC-----C------CCEEEETTEEEEECT------------TSEEEEEC
T ss_pred CCcEEEecC-------c-EEEECCCCcEEEEEE-----CCCCc-ccCceEECCEEEEEec------------CCEEEEEc
Confidence 567766321 2 999987422 34321 11111 1223334888887432 24588899
Q ss_pred cC-cceEEEeccCCCCCCCCCceeEEEe-CCEEEEEecCCCCCcccCceEEEECCC-CceEEecCCCCCCCCCceeEEEE
Q 008089 173 TE-TFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDT-LTWKELNTSGMVLSPRAGHSTVA 249 (578)
Q Consensus 173 ~~-t~~W~~~~~~g~~p~~R~~h~~~~~-~~~lyV~GG~~~~~~~~~di~~yD~~t-~~W~~v~~~g~~p~~R~~hs~v~ 249 (578)
+. ...|...... . ...+.+.. ++.||+ |..+ ..++.||+.. ..|..... ... ..+.+.
T Consensus 124 ~~g~~~~~~~~~~-----~-~~~~~~~~~~g~l~v-gt~~------~~l~~~d~~g~~~~~~~~~-----~~~-~~~~~~ 184 (330)
T 3hxj_A 124 TDGTEKWRFKTKK-----A-IYATPIVSEDGTIYV-GSND------NYLYAINPDGTEKWRFKTN-----DAI-TSAASI 184 (330)
T ss_dssp TTSCEEEEEECSS-----C-CCSCCEECTTSCEEE-ECTT------SEEEEECTTSCEEEEEECS-----SCC-CSCCEE
T ss_pred CCCCEEEEEcCCC-----c-eeeeeEEcCCCEEEE-EcCC------CEEEEECCCCCEeEEEecC-----CCc-eeeeEE
Confidence 87 4457654311 1 11222333 667666 3221 3588999872 23554321 111 122233
Q ss_pred -eCCEEEEEcCccCCCCccCcEEEEECCCC-cEEE
Q 008089 250 -FGKNLFVFGGFTDSQNLYDDLYMIDVDSG-LWTK 282 (578)
Q Consensus 250 -~~~~iyV~GG~~~~~~~~~dv~~ydi~t~-~W~~ 282 (578)
.++.||+-. ..+++||.... .|+.
T Consensus 185 d~~g~l~v~t---------~~l~~~d~~g~~~~~~ 210 (330)
T 3hxj_A 185 GKDGTIYFGS---------DKVYAINPDGTEKWNF 210 (330)
T ss_dssp CTTCCEEEES---------SSEEEECTTSCEEEEE
T ss_pred cCCCEEEEEe---------CEEEEECCCCcEEEEE
Confidence 355666543 34889994322 4654
No 231
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=74.94 E-value=1.3e+02 Score=34.80 Aligned_cols=69 Identities=17% Similarity=0.112 Sum_probs=37.4
Q ss_pred eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEE-EEECCC
Q 008089 199 WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLY-MIDVDS 277 (578)
Q Consensus 199 ~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~-~ydi~t 277 (578)
-+++.++++. ...++.++..+.....+.. .+..+..+.+.. +++.+++++. -..+| +||+.+
T Consensus 306 pdG~~la~~~-------~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~s-dg~~l~~~s~------~~~l~~~~d~~~ 368 (1045)
T 1k32_A 306 LDGDLIAFVS-------RGQAFIQDVSGTYVLKVPE---PLRIRYVRRGGD-TKVAFIHGTR------EGDFLGIYDYRT 368 (1045)
T ss_dssp CGGGCEEEEE-------TTEEEEECTTSSBEEECSC---CSCEEEEEECSS-SEEEEEEEET------TEEEEEEEETTT
T ss_pred CCCCEEEEEE-------cCEEEEEcCCCCceEEccC---CCcceEEeeeEc-CCCeEEEEEC------CCceEEEEECCC
Confidence 3555555544 2458888888776555432 111122222233 5555555443 23689 999988
Q ss_pred CcEEEEE
Q 008089 278 GLWTKVI 284 (578)
Q Consensus 278 ~~W~~l~ 284 (578)
.....+.
T Consensus 369 ~~~~~l~ 375 (1045)
T 1k32_A 369 GKAEKFE 375 (1045)
T ss_dssp CCEEECC
T ss_pred CCceEec
Confidence 8765543
No 232
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=74.47 E-value=89 Score=32.80 Aligned_cols=149 Identities=9% Similarity=0.014 Sum_probs=76.6
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecC---CCCCCCcceeEEE--ECCEEEEEcccCCCCCCCcEEEEEC
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKG---SPPTPRDSHSCTT--VGENLYVFGGTDGMNPLRDLHILDT 117 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g---~~P~~R~~hs~~~--~~~kIYv~GG~~~~~~~~~v~~yD~ 117 (578)
++.+|+|=| +.+|+++.....+....+.. .+|.. . -++.. .++++|+|=| +.+|+|+.
T Consensus 272 ~ge~y~Fkg--------~~~wr~~~~~~~~~p~~I~~~Wp~LP~~-i-DAa~~~~~~g~~~fFKg-------~~~W~~~~ 334 (450)
T 1su3_A 272 RGEVMFFKD--------RFYMRTNPFYPEVELNFISVFWPQLPNG-L-EAAYEFADRDEVRFFKG-------NKYWAVQG 334 (450)
T ss_dssp TTEEEEEET--------TEEEECCTTSSSCEEEEGGGTCTTSCSS-C-CEEEEEGGGTEEEEEET-------TEEEEEET
T ss_pred CCeEEEEeC--------CEEEEEcCCCCcccceehhHhccCCCCC-e-eEEEEEcCCCeEEEEeC-------CEEEEecC
Confidence 446999977 34677765544433222211 22322 1 12222 2689999977 36888874
Q ss_pred CCC--eE-Eecc-cCCCCCCCCccc-EEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEE-----EeccCC
Q 008089 118 SSH--TW-ISPS-VRGEGPEAREGH-SAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-----RATTSG 185 (578)
Q Consensus 118 ~t~--~W-~~l~-~~g~~P~~R~~h-s~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~-----~~~~~g 185 (578)
.+- .+ ..+. ..| .|..-..- ++... ++++|+|=| +..|+||..+.+-. .+.. +
T Consensus 335 ~~~~~gyP~~i~~~~g-~P~~~~~IDAA~~~~~~~k~yfFkG-------------~~yw~yd~~~~~~~~gYPk~I~~-~ 399 (450)
T 1su3_A 335 QNVLHGYPKDIYSSFG-FPRTVKHIDAALSEENTGKTYFFVA-------------NKYWRYDEYKRSMDPGYPKMIAH-D 399 (450)
T ss_dssp TEECTTCSEEHHHHHC-CCTTCCCCCEEEEETTTTEEEEEET-------------TEEEEEETTTTEECSSCSEEHHH-H
T ss_pred CcccCCCceeeehhhc-CCCCCCccceEEEEcCCCeEEEEeC-------------CEEEEEeCCCccccCCCCcchhh-c
Confidence 321 01 1111 011 22211122 23333 479999988 56788987654322 1211 0
Q ss_pred CCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEE
Q 008089 186 NPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE 231 (578)
Q Consensus 186 ~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~ 231 (578)
-+..+..-.++...++++|+|-| +..|.||..+.+-..
T Consensus 400 fpgip~~iDAA~~~~g~~YFFkg--------~~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 400 FPGIGHKVDAVFMKDGFFYFFHG--------TRQYKFDPKTKRILT 437 (450)
T ss_dssp STTSCSCCSEEEEETTEEEEEET--------TEEEEEETTTTEEEE
T ss_pred CCCCCCCccEEEEcCCeEEEEeC--------CEEEEEECCcceEec
Confidence 11122223344456899999976 347889987765443
No 233
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=73.95 E-value=45 Score=32.52 Aligned_cols=66 Identities=11% Similarity=0.003 Sum_probs=39.2
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEEEEECCCC
Q 008089 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (578)
Q Consensus 200 ~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~ 278 (578)
++.+++.|+.++ .+.+||+.+..-..+.. ......-.++... ++.+++.|+.+. .|.+||+.+.
T Consensus 138 ~~~~l~s~s~dg------~i~~wd~~~~~~~~~~~---~~~~~~i~~~~~~pdg~~lasg~~dg------~i~iwd~~~~ 202 (343)
T 3lrv_A 138 NTEYFIWADNRG------TIGFQSYEDDSQYIVHS---AKSDVEYSSGVLHKDSLLLALYSPDG------ILDVYNLSSP 202 (343)
T ss_dssp -CCEEEEEETTC------CEEEEESSSSCEEEEEC---CCSSCCCCEEEECTTSCEEEEECTTS------CEEEEESSCT
T ss_pred CCCEEEEEeCCC------cEEEEECCCCcEEEEEe---cCCCCceEEEEECCCCCEEEEEcCCC------EEEEEECCCC
Confidence 456777777553 38889998876644432 1111112233333 466777777543 4899999987
Q ss_pred cE
Q 008089 279 LW 280 (578)
Q Consensus 279 ~W 280 (578)
.-
T Consensus 203 ~~ 204 (343)
T 3lrv_A 203 DQ 204 (343)
T ss_dssp TS
T ss_pred CC
Confidence 53
No 234
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=73.20 E-value=44 Score=34.74 Aligned_cols=191 Identities=16% Similarity=0.219 Sum_probs=102.3
Q ss_pred EEEEE--CCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEE----EcCcceEEEeccCC
Q 008089 112 LHILD--TSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYIL----NTETFVWKRATTSG 185 (578)
Q Consensus 112 v~~yD--~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~y----d~~t~~W~~~~~~g 185 (578)
-|.+- ...+.|++.+ .+..|..-.-|+.|.+++.-|.+|=...+ . ...-..-+|.- .+....=+.+..
T Consensus 260 ~W~~~T~F~~spW~~t~-L~~i~~vTe~HSFa~i~~~~fa~GyHnGD--v-~PRe~G~~yfs~~~~sp~~~vrr~i~s-- 333 (670)
T 3ju4_A 260 NWHMGTSFHKSPWRKTD-LGLIPSVTEVHSFATIDNNGFAMGYHQGD--V-APREVGLFYFPDAFNSPSNYVRRQIPS-- 333 (670)
T ss_dssp EEEEEECSTTSCCEEEE-CCSCTTCSEEEEEEECSSSCEEEEEEECS--S-SSCEEEEEEETTTTTCTTCCEEEECCG--
T ss_pred eeeeeeeeccCCceecc-cccccceeeeeeeeEecCCceEEEeccCC--C-CcceeeEEEecccccCCcceeeeechh--
Confidence 45543 3456787654 34566777789999999877777632111 1 11111111111 112223333322
Q ss_pred CCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeE---EEEeCCEEEEEcCccC
Q 008089 186 NPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHS---TVAFGKNLFVFGGFTD 262 (578)
Q Consensus 186 ~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs---~v~~~~~iyV~GG~~~ 262 (578)
.....-...|.-++++.||+.--.......-..+++-+.....|..+.. | ....|+ .+.+++.||+||-...
T Consensus 334 ey~~~AsEPCvkyYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrf----p-~nvHhtnlPFakvgD~l~mFgsERA 408 (670)
T 3ju4_A 334 EYEPDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRF----P-HNVHHTTLPFAKVGDDLIMFGSERA 408 (670)
T ss_dssp GGCTTEEEEEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEEC----T-TCCCSSCCCEEEETTEEEEEEECSS
T ss_pred hhccccccchhhhhCCEEEEEecCcCCCCCcceeeeecccCCchhheec----c-ccccccCCCcceeCCEEEEEecccc
Confidence 1111222334556799999975322222244567888888889999975 2 222333 5678999999996432
Q ss_pred CCC---------c---cCcE--EE-----EECCCCcEEEEEeC---CCCCCCceeeeEeeeeccCCCEE-EEEcccc
Q 008089 263 SQN---------L---YDDL--YM-----IDVDSGLWTKVITT---GEGPSARFSVAGDCLDPLKGGVL-VFIGGCN 316 (578)
Q Consensus 263 ~~~---------~---~~dv--~~-----ydi~t~~W~~l~~~---~~~P~~r~~~~~~~~~~~~~~~l-~v~GG~~ 316 (578)
..+ + .... .+ |..+.-.|..|... +..-....+..++|+ .++.| |+|||.+
T Consensus 409 ~nEWE~G~pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~v---KD~~lyyiFGgEd 482 (670)
T 3ju4_A 409 ENEWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVV---KDNYIYYMFGGED 482 (670)
T ss_dssp TTCSSTTCCCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEE---ETTEEEEEEEEBC
T ss_pred ccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEE---eCCEEEEEecCcc
Confidence 111 1 1111 22 23445578888653 444444555666665 45554 6789875
No 235
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=72.34 E-value=97 Score=32.29 Aligned_cols=173 Identities=10% Similarity=0.064 Sum_probs=81.1
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd 172 (578)
+++.++.|+.++ .+.++|.....-..+. + .. ..-.+++.. +++.++.|+.. ..+.++|
T Consensus 314 ~~~~l~t~~~d~-----~i~~w~~~~~~~~~~~--~--~~-~~v~~~~~s~~g~~l~~~~~d-----------g~v~~~~ 372 (577)
T 2ymu_A 314 DGQTIASASDDK-----TVKLWNRNGQHLQTLT--G--HS-SSVWGVAFSPDGQTIASASDD-----------KTVKLWN 372 (577)
T ss_dssp TSSEEEEEETTS-----CEEEEETTSCEEEEEC--C--CS-SCEEEEEECTTSSEEEEEETT-----------SEEEEEE
T ss_pred CCCEEEEEeCCC-----eEEEEeCCCCeeEEEe--C--CC-CCEEEEEECCCCCEEEEEeCC-----------CEEEEEc
Confidence 455666666543 3677787666544332 1 11 111122222 45566666621 2356677
Q ss_pred cCcceEEEeccCCCCCCCCCceeEEE--eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe
Q 008089 173 TETFVWKRATTSGNPPSARDSHTCSS--WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF 250 (578)
Q Consensus 173 ~~t~~W~~~~~~g~~p~~R~~h~~~~--~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~ 250 (578)
........+... ...-.++. .+++.++.|+.++ .+.+||.....-..+.. ........++.-
T Consensus 373 ~~~~~~~~~~~~------~~~v~~~~~s~dg~~l~~~~~d~------~v~~~~~~~~~~~~~~~----~~~~v~~~~~s~ 436 (577)
T 2ymu_A 373 RNGQLLQTLTGH------SSSVRGVAFSPDGQTIASASDDK------TVKLWNRNGQLLQTLTG----HSSSVWGVAFSP 436 (577)
T ss_dssp TTCCEEEEEECC------SSCEEEEEECTTSSCEEEEETTS------EEEEECTTCCEEEEEEC----CSSCEEEEEECT
T ss_pred CCCCEEEEecCC------CCCeEEEEECCCCCEEEEEeCCC------EEEEEeCCCCEEEEecC----CCCCeEEEEECC
Confidence 655444444311 11112222 2566777776542 37778865443333322 111111112222
Q ss_pred CCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccC
Q 008089 251 GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (578)
Q Consensus 251 ~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (578)
++++++.++.+ ..+.+||.....-..+... .....+.++ ..++.+++.|+.+.
T Consensus 437 d~~~l~~~~~d------~~v~~w~~~~~~~~~~~~~------~~~v~~~~~--spd~~~las~~~d~ 489 (577)
T 2ymu_A 437 DDQTIASASDD------KTVKLWNRNGQLLQTLTGH------SSSVRGVAF--SPDGQTIASASDDK 489 (577)
T ss_dssp TSSEEEEEETT------SEEEEEETTSCEEEEEECC------SSCEEEEEE--CTTSCEEEEEETTS
T ss_pred CCCEEEEEcCC------CEEEEEECCCCEEEEEcCC------CCCEEEEEE--cCCCCEEEEEeCCC
Confidence 45666766653 2478889776655544321 111222223 34566666666543
No 236
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=72.12 E-value=85 Score=31.53 Aligned_cols=211 Identities=14% Similarity=0.145 Sum_probs=105.3
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCC--C-----cce--eEEEE----CCEEEEEcccCCCCCC
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTP--R-----DSH--SCTTV----GENLYVFGGTDGMNPL 109 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~--R-----~~h--s~~~~----~~kIYv~GG~~~~~~~ 109 (578)
.+.||+.+..+. .-.-+++.+-...+|..+......+.. + ..+ +++.. .+.||+.+- .
T Consensus 67 ~~~l~~g~~~g~---~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~------~ 137 (394)
T 3b7f_A 67 PERMLMAARTGH---LGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS------P 137 (394)
T ss_dssp TTCEEEEEEC-----CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE------T
T ss_pred CCeEEEEecCCC---CCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEec------C
Confidence 455777654221 112477777777899987522111211 1 111 22222 466777542 1
Q ss_pred CcEEEEECCCCeEEecccCCCCCC--------------CCcccEEEEE---CCEEEEEccCCCCCCCCCceeeceEEEEE
Q 008089 110 RDLHILDTSSHTWISPSVRGEGPE--------------AREGHSAALV---GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (578)
Q Consensus 110 ~~v~~yD~~t~~W~~l~~~g~~P~--------------~R~~hs~~~~---~~~lyvfGG~~~~~~~~~~~~~ndv~~yd 172 (578)
..+++.+-...+|+.+......|. ...-+++++. .+.||+..+ ...+++.+
T Consensus 138 ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~------------~ggl~~s~ 205 (394)
T 3b7f_A 138 QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS------------SGGVFEST 205 (394)
T ss_dssp TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE------------TBEEEEES
T ss_pred CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC------------CCCEEEEC
Confidence 348888777789987642111111 1122344433 246777543 13477777
Q ss_pred cCcceEEEeccCC---CCCC-----CCCceeEEEeC---CEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCC
Q 008089 173 TETFVWKRATTSG---NPPS-----ARDSHTCSSWK---NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSP 241 (578)
Q Consensus 173 ~~t~~W~~~~~~g---~~p~-----~R~~h~~~~~~---~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~ 241 (578)
-...+|+.+.... ..|. ....+.++... +.||+-.+ ..|++.+-...+|+.+.. .++..
T Consensus 206 DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~--------~gl~~s~D~G~tW~~~~~--~l~~~ 275 (394)
T 3b7f_A 206 DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH--------CGIYRMDRREGVWKRIGD--AMPRE 275 (394)
T ss_dssp STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET--------TEEEEEETTTTEEECGGG--GSCTT
T ss_pred CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC--------CeEEEeCCCCCcceECCC--CCCCC
Confidence 7788999885311 1121 12234444432 56776321 337888888899998864 12221
Q ss_pred --CceeEEEEe---CCEEEEEcCccCC------CCccCcEEEEECCCCcEEEEE
Q 008089 242 --RAGHSTVAF---GKNLFVFGGFTDS------QNLYDDLYMIDVDSGLWTKVI 284 (578)
Q Consensus 242 --R~~hs~v~~---~~~iyV~GG~~~~------~~~~~dv~~ydi~t~~W~~l~ 284 (578)
.....++.. .+.||+....... ......+|+-.-...+|+.+.
T Consensus 276 ~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~ 329 (394)
T 3b7f_A 276 VGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD 329 (394)
T ss_dssp TCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC
T ss_pred CccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC
Confidence 333444432 3567775311000 001123554433346899986
No 237
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=71.89 E-value=90 Score=31.72 Aligned_cols=155 Identities=13% Similarity=0.089 Sum_probs=79.4
Q ss_pred eEEEECCEEEEEcccCCCCCCCcEEEEECCCCeE--Eeccc-CCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCce
Q 008089 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW--ISPSV-RGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEV 163 (578)
Q Consensus 89 s~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W--~~l~~-~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~ 163 (578)
+++.+++++|+|=|. .+|+++.....- ..+.. -..+|. ... ++... ++++|+|-|
T Consensus 185 Av~~~~g~~~fFkg~-------~~Wr~~~~~~~~~p~~I~~~wpgLP~-~iD-Aa~~~~~~g~~~fFkg----------- 244 (365)
T 3ba0_A 185 AVTTVGNKIFFFKDR-------FFWLKVSERPKTSVNLISSLWPTLPS-GIE-AAYEIEARNQVFLFKD----------- 244 (365)
T ss_dssp CEEEETTEEEEEETT-------EEEECCSSCCCCCEEEHHHHCSSCCS-SCC-EEEEEGGGTEEEEEET-----------
T ss_pred eEEEcCCeEEEEeCC-------EEEEEcCCCccCCccchhhhccCCCC-Ccc-EEEEecCCCEEEEEeC-----------
Confidence 345578999999763 467765443211 11110 012342 222 23333 689999977
Q ss_pred eeceEEEEEcCcce--E-EEeccCCCCCC-CCCceeEEEe--CCEEEEEecCCCCCcccCceEEEECCCCceEEecC---
Q 008089 164 YYNDLYILNTETFV--W-KRATTSGNPPS-ARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT--- 234 (578)
Q Consensus 164 ~~ndv~~yd~~t~~--W-~~~~~~g~~p~-~R~~h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~--- 234 (578)
+.+|+|+..... + +.+...| .|. ...--++... ++++|+|-| +..|+||..+.+-..--+
T Consensus 245 --~~yWr~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~~~~yfFkG--------~~yw~yd~~~~~v~~gyPk~I 313 (365)
T 3ba0_A 245 --DKYWLISNLRPEPNYPKSIHSFG-FPNFVKKIDAAVFNPRFYRTYFFVD--------NQYWRYDERRQMMDPGYPKLI 313 (365)
T ss_dssp --TEEEECSTTSCTTTCSEETTTTT-CCTTCCCCCEEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCCCCH
T ss_pred --CEEEEEcCCcccCCCCceeeecc-CCCCCCCcCEEEEeCCCCEEEEEEC--------CEEEEEeCCcceecCCCCcch
Confidence 345666543211 1 1222212 222 1122233333 579999966 458899976653211000
Q ss_pred -CCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEEEEECCCCcEEE
Q 008089 235 -SGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (578)
Q Consensus 235 -~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~ 282 (578)
.+-+..+..--+++.. ++++|+|=|. ..|+||..+.+-..
T Consensus 314 ~~~f~g~p~~iDaA~~~~~g~~YfFkg~--------~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 314 TKNFQGIGPKIDAVFYSKNKYYYFFQGS--------NQFEYDFLLQRITK 355 (365)
T ss_dssp HHHSTTCCSSCSEEEEETTTEEEEEETT--------EEEEEETTTTEEEE
T ss_pred hhcCCCCCCccceeeEecCCcEEEEeCC--------EEEEEECCccEEec
Confidence 0001122333444545 7889998773 48999998877555
No 238
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=69.55 E-value=38 Score=36.05 Aligned_cols=178 Identities=10% Similarity=-0.067 Sum_probs=86.7
Q ss_pred EEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEE
Q 008089 62 VHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAA 141 (578)
Q Consensus 62 v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~ 141 (578)
+.+||+.+++..++... +. ...+..-+++..++++.+... ...++++|+.+.++..+... .. .....+
T Consensus 134 ~~l~d~~~g~~~~l~~~---~~---~~~~~spDG~~la~~~~~~~~-~~~i~~~d~~~g~~~~l~~~---~~--~~~~~~ 201 (582)
T 3o4h_A 134 VALYALDGGGLRELARL---PG---FGFVSDIRGDLIAGLGFFGGG-RVSLFTSNLSSGGLRVFDSG---EG--SFSSAS 201 (582)
T ss_dssp EEEEEEETTEEEEEEEE---SS---CEEEEEEETTEEEEEEEEETT-EEEEEEEETTTCCCEEECCS---SC--EEEEEE
T ss_pred ceEEEccCCcEEEeecC---CC---ceEEECCCCCEEEEEEEcCCC-CeEEEEEcCCCCCceEeecC---CC--ccccce
Confidence 44778888877765421 11 222223355555555443222 13599999998888765411 11 112222
Q ss_pred EE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeE--------EEeCCEEEEEecCCCC
Q 008089 142 LV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTC--------SSWKNKIIVIGGEDGH 212 (578)
Q Consensus 142 ~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~--------~~~~~~lyV~GG~~~~ 212 (578)
.. +++.++.+... . ...++++|+.+.... +..... ....... ..-++++|+.+..++
T Consensus 202 ~SpDG~~l~~~~~~------~---~~~i~~~d~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g- 267 (582)
T 3o4h_A 202 ISPGMKVTAGLETA------R---EARLVTVDPRDGSVE-DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREG- 267 (582)
T ss_dssp ECTTSCEEEEEECS------S---CEEEEEECTTTCCEE-ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETT-
T ss_pred ECCCCCEEEEccCC------C---eeEEEEEcCCCCcEE-EccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCC-
Confidence 22 44433333311 1 246899999988877 321100 0000011 233566766665432
Q ss_pred CcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEEEE
Q 008089 213 DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (578)
Q Consensus 213 ~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l 283 (578)
.+.+|++ ++... .+.......++. ++++++.++... ....+|.+|..+ ..+.+
T Consensus 268 -----~~~l~~~--g~~~~------~~~~~v~~~~~s-dg~~l~~~s~~~---~p~~l~~~d~~~-~~~~l 320 (582)
T 3o4h_A 268 -----RSAVFID--GERVE------APQGNHGRVVLW-RGKLVTSHTSLS---TPPRIVSLPSGE-PLLEG 320 (582)
T ss_dssp -----EEEEEET--TEEEC------CCSSEEEEEEEE-TTEEEEEEEETT---EEEEEEEETTCC-EEECC
T ss_pred -----cEEEEEE--CCeec------cCCCceEEEEec-CCEEEEEEcCCC---CCCeEEEEcCCC-ceEEE
Confidence 3566666 33322 111111112233 777776655422 235678888765 44333
No 239
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=69.19 E-value=84 Score=30.27 Aligned_cols=146 Identities=10% Similarity=0.056 Sum_probs=71.7
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd 172 (578)
+++.++.|+.++ .+.+||+.+.+-...- .+. ...-.+++.. ++.+++.|+.+ ..+.++|
T Consensus 76 dg~~l~s~s~D~-----~v~~wd~~~~~~~~~~-~~h---~~~v~~~~~~~~~~~l~s~s~D-----------~~i~vwd 135 (319)
T 3frx_A 76 DGAYALSASWDK-----TLRLWDVATGETYQRF-VGH---KSDVMSVDIDKKASMIISGSRD-----------KTIKVWT 135 (319)
T ss_dssp TSSEEEEEETTS-----EEEEEETTTTEEEEEE-ECC---SSCEEEEEECTTSCEEEEEETT-----------SCEEEEE
T ss_pred CCCEEEEEeCCC-----EEEEEECCCCCeeEEE-ccC---CCcEEEEEEcCCCCEEEEEeCC-----------CeEEEEE
Confidence 566777777653 5888999887643211 111 0011122222 35667777732 3466777
Q ss_pred cCcceEEEeccCCCCCCCCCceeEEEe-------CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCcee
Q 008089 173 TETFVWKRATTSGNPPSARDSHTCSSW-------KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGH 245 (578)
Q Consensus 173 ~~t~~W~~~~~~g~~p~~R~~h~~~~~-------~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~h 245 (578)
+....-..+... ...-..+... ++.+++.||.++ .+.+||+.+..-...-. + ....-.
T Consensus 136 ~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~~~~~l~s~~~d~------~i~~wd~~~~~~~~~~~-~---h~~~v~ 200 (319)
T 3frx_A 136 IKGQCLATLLGH-----NDWVSQVRVVPNEKADDDSVTIISAGNDK------MVKAWNLNQFQIEADFI-G---HNSNIN 200 (319)
T ss_dssp TTSCEEEEECCC-----SSCEEEEEECCC------CCEEEEEETTS------CEEEEETTTTEEEEEEC-C---CCSCEE
T ss_pred CCCCeEEEEecc-----CCcEEEEEEccCCCCCCCccEEEEEeCCC------EEEEEECCcchhheeec-C---CCCcEE
Confidence 765544333211 0001111111 233566666543 37888887654332211 1 111112
Q ss_pred EEEEe-CCEEEEEcCccCCCCccCcEEEEECCCCcE
Q 008089 246 STVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 280 (578)
Q Consensus 246 s~v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W 280 (578)
+++.. ++++++.||.+. .|.+||+.+..-
T Consensus 201 ~~~~sp~g~~l~s~~~dg------~i~iwd~~~~~~ 230 (319)
T 3frx_A 201 TLTASPDGTLIASAGKDG------EIMLWNLAAKKA 230 (319)
T ss_dssp EEEECTTSSEEEEEETTC------EEEEEETTTTEE
T ss_pred EEEEcCCCCEEEEEeCCC------eEEEEECCCCcE
Confidence 22222 456777777542 488999988753
No 240
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=67.36 E-value=58 Score=31.31 Aligned_cols=104 Identities=9% Similarity=0.069 Sum_probs=53.0
Q ss_pred cccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CC-EEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCc
Q 008089 59 TNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GE-NLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEARE 136 (578)
Q Consensus 59 ~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~-kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~ 136 (578)
...+++||+.++++..+. ... .-.+.+.. ++ .||+..........+.+++||+..............+.. .
T Consensus 168 ~~~v~~~d~~~g~~~~~~---~~~---~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~-~ 240 (305)
T 3dr2_A 168 HHSVYRLPPDGSPLQRMA---DLD---HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG-L 240 (305)
T ss_dssp CEEEEEECSSSCCCEEEE---EES---SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS-C
T ss_pred CCeEEEEcCCCCcEEEEe---cCC---CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC-C
Confidence 356999999888777653 111 11223332 33 577765321111235799999876543221111011111 1
Q ss_pred ccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEec
Q 008089 137 GHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT 182 (578)
Q Consensus 137 ~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~ 182 (578)
-.+++.. +++||+..+ +.+++||++......+.
T Consensus 241 pdgi~~d~~G~lwv~~~-------------~gv~~~~~~g~~~~~~~ 274 (305)
T 3dr2_A 241 PDGFCVDRGGWLWSSSG-------------TGVCVFDSDGQLLGHIP 274 (305)
T ss_dssp CCSEEECTTSCEEECCS-------------SEEEEECTTSCEEEEEE
T ss_pred CCeEEECCCCCEEEecC-------------CcEEEECCCCCEEEEEE
Confidence 1123332 456777432 34899999877666664
No 241
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=67.36 E-value=89 Score=29.87 Aligned_cols=97 Identities=12% Similarity=0.091 Sum_probs=50.6
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe--CCEEEEEcCccCCCCccCcEEEEECCCC
Q 008089 201 NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (578)
Q Consensus 201 ~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~--~~~iyV~GG~~~~~~~~~dv~~ydi~t~ 278 (578)
+.+++.|+.++ .+.+||+.+..-...-. .....-.++... ++.+++.|+.+. .|.+||+.+.
T Consensus 85 ~~~l~~~~~dg------~i~v~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~l~s~~~dg------~i~iwd~~~~ 148 (366)
T 3k26_A 85 HPLLAVAGSRG------IIRIINPITMQCIKHYV----GHGNAINELKFHPRDPNLLLSVSKDH------ALRLWNIQTD 148 (366)
T ss_dssp CEEEEEEETTC------EEEEECTTTCCEEEEEE----SCCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTTT
T ss_pred CCEEEEecCCC------EEEEEEchhceEeeeec----CCCCcEEEEEECCCCCCEEEEEeCCC------eEEEEEeecC
Confidence 57888887553 48889987654332211 011112222232 456777777643 4899999987
Q ss_pred cEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccC
Q 008089 279 LWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (578)
Q Consensus 279 ~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (578)
.-...... ............+ ..++..++.|+.+.
T Consensus 149 ~~~~~~~~--~~~~~~~v~~~~~--~~~~~~l~~~~~dg 183 (366)
T 3k26_A 149 TLVAIFGG--VEGHRDEVLSADY--DLLGEKIMSCGMDH 183 (366)
T ss_dssp EEEEEECS--TTSCSSCEEEEEE--CTTSSEEEEEETTS
T ss_pred eEEEEecc--cccccCceeEEEE--CCCCCEEEEecCCC
Confidence 65443311 0111222232333 23555667776654
No 242
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=66.84 E-value=2 Score=43.88 Aligned_cols=70 Identities=16% Similarity=0.182 Sum_probs=31.1
Q ss_pred eEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCC--cEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcE
Q 008089 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDL 112 (578)
Q Consensus 35 hs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v 112 (578)
+++.++. ++.||+.+. + ..++.+|..++ .|+... +. ...+.+..++++|+.|+.++ .+
T Consensus 2 ~ssP~v~-~~~v~~gs~-d------g~v~a~d~~tG~~~W~~~~--~~-----~~s~p~~~~g~~~v~~s~dg-----~l 61 (369)
T 2hz6_A 2 SSTVTLP-ETLLFVSTL-D------GSLHAVSKRTGSIKWTLKE--DP-----VLQVPTHVEEPAFLPDPNDG-----SL 61 (369)
T ss_dssp ------C-TTEEEEEET-T------SEEEEEETTTCCEEEEEEC--CC-----SCCCC-----CCEEECTTTC-----CE
T ss_pred CCCCeee-CCEEEEEcC-C------CEEEEEECCCCCEEEEecC--CC-----ceecceEcCCCEEEEeCCCC-----EE
Confidence 3444554 455666432 1 35999998876 576522 11 11222345677888875443 49
Q ss_pred EEEECCCC--eEEe
Q 008089 113 HILDTSSH--TWIS 124 (578)
Q Consensus 113 ~~yD~~t~--~W~~ 124 (578)
+++|..+. .|..
T Consensus 62 ~a~d~~tG~~~w~~ 75 (369)
T 2hz6_A 62 YTLGSKNNEGLTKL 75 (369)
T ss_dssp EEC-----CCSEEC
T ss_pred EEEECCCCceeeee
Confidence 99998654 4653
No 243
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=66.84 E-value=1e+02 Score=30.45 Aligned_cols=202 Identities=8% Similarity=0.030 Sum_probs=93.9
Q ss_pred EEEE-cCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEE-ECCEEEEEcccCCCCCCCcEEE
Q 008089 37 CNAI-KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRDLHI 114 (578)
Q Consensus 37 ~v~v-~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~kIYv~GG~~~~~~~~~v~~ 114 (578)
++++ .+++.+.+.+|.. ...+.++|+.+.+..... ... . .. .+++. -++++++.|+. +.+.+
T Consensus 138 ~v~fSpDg~~la~as~~~-----d~~i~iwd~~~~~~~~~~-~~~--~-~V-~~v~fspdg~~l~s~s~------~~~~~ 201 (365)
T 4h5i_A 138 LVYISREGTVAAIASSKV-----PAIMRIIDPSDLTEKFEI-ETR--G-EV-KDLHFSTDGKVVAYITG------SSLEV 201 (365)
T ss_dssp EEEECTTSSCEEEEESCS-----SCEEEEEETTTTEEEEEE-ECS--S-CC-CEEEECTTSSEEEEECS------SCEEE
T ss_pred EEEEcCCCCEEEEEECCC-----CCEEEEeECCCCcEEEEe-CCC--C-ce-EEEEEccCCceEEeccc------eeEEE
Confidence 4555 3455454544421 135889999887655421 111 1 11 12222 25666666642 34777
Q ss_pred EECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCce
Q 008089 115 LDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSH 194 (578)
Q Consensus 115 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h 194 (578)
++..+......... ..........+...++..++.++.... ....++.+|.....+...... ........-
T Consensus 202 ~~~~~~~~~~~~~~-~~~~~~v~~v~fspdg~~l~~~s~d~~-------~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~V 272 (365)
T 4h5i_A 202 ISTVTGSCIARKTD-FDKNWSLSKINFIADDTVLIAASLKKG-------KGIVLTKISIKSGNTSVLRSK-QVTNRFKGI 272 (365)
T ss_dssp EETTTCCEEEEECC-CCTTEEEEEEEEEETTEEEEEEEESSS-------CCEEEEEEEEETTEEEEEEEE-EEESSCSCE
T ss_pred EEeccCcceeeeec-CCCCCCEEEEEEcCCCCEEEEEecCCc-------ceeEEeecccccceecceeee-eecCCCCCe
Confidence 88777655332211 001111111222346777777763211 112355566655544332110 000001111
Q ss_pred eEEE--eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEE-eCCEEEEEcCccCCCCccCcEE
Q 008089 195 TCSS--WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDLY 271 (578)
Q Consensus 195 ~~~~--~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~-~~~~iyV~GG~~~~~~~~~dv~ 271 (578)
.++. .++++++.|+.++ .|.+||..+.+-...-..+ ....-.+++. -++++++-|+.+. .|.
T Consensus 273 ~~~~~Spdg~~lasgs~D~------~V~iwd~~~~~~~~~~~~g---H~~~V~~v~fSpdg~~laS~S~D~------tvr 337 (365)
T 4h5i_A 273 TSMDVDMKGELAVLASNDN------SIALVKLKDLSMSKIFKQA---HSFAITEVTISPDSTYVASVSAAN------TIH 337 (365)
T ss_dssp EEEEECTTSCEEEEEETTS------CEEEEETTTTEEEEEETTS---SSSCEEEEEECTTSCEEEEEETTS------EEE
T ss_pred EeEEECCCCCceEEEcCCC------EEEEEECCCCcEEEEecCc---ccCCEEEEEECCCCCEEEEEeCCC------eEE
Confidence 2222 3788888888653 3889999876533211111 1111112222 2567777776543 378
Q ss_pred EEECCCC
Q 008089 272 MIDVDSG 278 (578)
Q Consensus 272 ~ydi~t~ 278 (578)
+||+..+
T Consensus 338 vw~ip~~ 344 (365)
T 4h5i_A 338 IIKLPLN 344 (365)
T ss_dssp EEECCTT
T ss_pred EEEcCCC
Confidence 8887543
No 244
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=65.66 E-value=1.2e+02 Score=30.82 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=14.4
Q ss_pred cceEEEEEcCCCEEEEEcC
Q 008089 33 WGHTCNAIKGGRFLYVFGG 51 (578)
Q Consensus 33 ~ghs~v~v~~g~~Iyv~GG 51 (578)
..|++++..++..||.+|-
T Consensus 77 ~~ht~al~~~gg~v~~wG~ 95 (406)
T 4d9s_A 77 ADHTVAYSQSGMEVYSWGW 95 (406)
T ss_dssp SSEEEEEETTTTEEEEEEC
T ss_pred cceEEEEECCCCEEEEEcC
Confidence 4688877776668999984
No 245
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=65.46 E-value=38 Score=31.28 Aligned_cols=105 Identities=17% Similarity=0.199 Sum_probs=56.9
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCCcE---EEeeecC-CCCCCCcceeEEE-ECCEEEEEcccCCCCCCCcEEEEEC
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTW---SQPVIKG-SPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRDLHILDT 117 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W---~~l~~~g-~~P~~R~~hs~~~-~~~kIYv~GG~~~~~~~~~v~~yD~ 117 (578)
++++|+|-| +.+|+|+..+... +.+...+ .+|......+... .++++|+|-| +..|+||.
T Consensus 61 ~g~~yfFkg--------~~yw~~~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG-------~~yw~yd~ 125 (196)
T 3c7x_A 61 DGKFVFFKG--------DKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG-------NKYYRFNE 125 (196)
T ss_dssp TSCEEEEET--------TEEEEEETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEET-------TEEEEEET
T ss_pred CCcEEEecC--------CEEEEEeCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEEC-------CEEEEEeC
Confidence 446899877 4689998542111 1121111 1342233333222 2689999977 46899998
Q ss_pred CCCeEEe-----cccCCCCCCCCcccEEEEE-CC-EEEEEccCCCCCCCCCceeeceEEEEEcCcce
Q 008089 118 SSHTWIS-----PSVRGEGPEAREGHSAALV-GK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFV 177 (578)
Q Consensus 118 ~t~~W~~-----l~~~g~~P~~R~~hs~~~~-~~-~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~ 177 (578)
.+++-.. +..-..+|. .-.++... ++ ++|+|-| +..|+||..+.+
T Consensus 126 ~~~~v~~gyPk~i~~~~gip~--~idaAf~~~~~~~~YfFkg-------------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 126 ELRAVDSEYPKNIKVWEGIPE--SPRGSFMGSDEVFTYFYKG-------------NKYWKFNNQKLK 177 (196)
T ss_dssp TTTEECTTCSEEGGGSBTCCS--SCSEEEECTTSSEEEEEET-------------TEEEEEETTTTE
T ss_pred CcccccCCCCccHHHCCCcCC--CcceeEEecCCCEEEEEEC-------------CEEEEEECCcce
Confidence 8765421 111111222 22233333 34 8999988 457889987654
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=65.45 E-value=89 Score=29.16 Aligned_cols=200 Identities=6% Similarity=-0.041 Sum_probs=106.9
Q ss_pred eEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcE
Q 008089 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDL 112 (578)
Q Consensus 35 hs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v 112 (578)
|..+....++.||+.-.. .+.+++||+....-..+. ...+ ..-++++.. +++||+.-.. .+.+
T Consensus 39 ~gi~~d~~~~~ly~~d~~------~~~I~~~~~~g~~~~~~~-~~~~---~~p~~ia~d~~~~~lyv~d~~-----~~~I 103 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTDIS------EPSIGRASLHGGEPTTII-RQDL---GSPEGIALDHLGRTIFWTDSQ-----LDRI 103 (267)
T ss_dssp EEEEEETTTTEEEEEETT------TTEEEEEESSSCCCEEEE-CTTC---CCEEEEEEETTTTEEEEEETT-----TTEE
T ss_pred EEEEEecCCCEEEEEECC------CCEEEEEecCCCCcEEEE-ECCC---CCccEEEEEecCCeEEEEECC-----CCEE
Confidence 344444446678886532 256999999765433322 1111 122344443 5789988542 3579
Q ss_pred EEEECCCCeEEecccCCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCC
Q 008089 113 HILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSA 190 (578)
Q Consensus 113 ~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~ 190 (578)
+++++....-..+... ... .-..+++. +++||+..... ....+++++++...-+.+... ..
T Consensus 104 ~~~~~~g~~~~~~~~~-~~~---~P~~i~vd~~~g~lyv~~~~~---------~~~~I~~~~~dg~~~~~~~~~-~~--- 166 (267)
T 1npe_A 104 EVAKMDGTQRRVLFDT-GLV---NPRGIVTDPVRGNLYWTDWNR---------DNPKIETSHMDGTNRRILAQD-NL--- 166 (267)
T ss_dssp EEEETTSCSCEEEECS-SCS---SEEEEEEETTTTEEEEEECCS---------SSCEEEEEETTSCCCEEEECT-TC---
T ss_pred EEEEcCCCCEEEEEEC-CCC---CccEEEEeeCCCEEEEEECCC---------CCcEEEEEecCCCCcEEEEEC-CC---
Confidence 9999875432222111 111 12344444 57899875310 024678888765443333211 11
Q ss_pred CCceeEEEe--CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccC
Q 008089 191 RDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYD 268 (578)
Q Consensus 191 R~~h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~ 268 (578)
..-..+++- ++.||+.--. .+.|+++|+.+..-..+... ...| ..++..++.+|+.-.. .+
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~------~~~I~~~~~~g~~~~~~~~~--~~~P---~gi~~d~~~lyva~~~------~~ 229 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAG------THRAECLNPAQPGRRKVLEG--LQYP---FAVTSYGKNLYYTDWK------TN 229 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETT------TTEEEEEETTEEEEEEEEEC--CCSE---EEEEEETTEEEEEETT------TT
T ss_pred CCCcEEEEcCCCCEEEEEECC------CCEEEEEecCCCceEEEecC--CCCc---eEEEEeCCEEEEEECC------CC
Confidence 122333433 5789987532 35689999876543333221 1122 3445568889986533 24
Q ss_pred cEEEEECCCCcEEEE
Q 008089 269 DLYMIDVDSGLWTKV 283 (578)
Q Consensus 269 dv~~ydi~t~~W~~l 283 (578)
.|+++|+.+++-...
T Consensus 230 ~v~~~d~~~g~~~~~ 244 (267)
T 1npe_A 230 SVIAMDLAISKEMDT 244 (267)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred eEEEEeCCCCCceEE
Confidence 599999988765544
No 247
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=64.82 E-value=1e+02 Score=29.77 Aligned_cols=63 Identities=11% Similarity=0.066 Sum_probs=36.5
Q ss_pred EEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEE-ECCEEEEEcccCCCCCCCcEEEEECCCCe
Q 008089 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRDLHILDTSSHT 121 (578)
Q Consensus 45 ~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~kIYv~GG~~~~~~~~~v~~yD~~t~~ 121 (578)
.+++.|+.+ ..+.+||..+.+-.... .+.. ...-.+++. -++.+++.|+.++ .+.+||+.+.+
T Consensus 140 ~~l~s~s~d------g~i~~wd~~~~~~~~~~-~~~~--~~~i~~~~~~pdg~~lasg~~dg-----~i~iwd~~~~~ 203 (343)
T 3lrv_A 140 EYFIWADNR------GTIGFQSYEDDSQYIVH-SAKS--DVEYSSGVLHKDSLLLALYSPDG-----ILDVYNLSSPD 203 (343)
T ss_dssp CEEEEEETT------CCEEEEESSSSCEEEEE-CCCS--SCCCCEEEECTTSCEEEEECTTS-----CEEEEESSCTT
T ss_pred CEEEEEeCC------CcEEEEECCCCcEEEEE-ecCC--CCceEEEEECCCCCEEEEEcCCC-----EEEEEECCCCC
Confidence 356667643 35889999887664322 1111 111122222 2667888887654 58899988765
No 248
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=64.47 E-value=2.1e+02 Score=33.02 Aligned_cols=194 Identities=10% Similarity=0.038 Sum_probs=95.3
Q ss_pred EEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEEECCCCeEEe
Q 008089 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWIS 124 (578)
Q Consensus 45 ~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~ 124 (578)
.+++.+..+. ...+|.++........+... . .....+..-+++.++++. -..++.+|+.......
T Consensus 215 ~l~~~~~~dg----~~~l~~~~~~g~~~~~l~~~---~--~~~~~~~SpDG~~la~~~------~~~i~~~d~~~~~l~~ 279 (1045)
T 1k32_A 215 RIYFITDIDG----FGQIYSTDLDGKDLRKHTSF---T--DYYPRHLNTDGRRILFSK------GGSIYIFNPDTEKIEK 279 (1045)
T ss_dssp EEEEEECTTS----SCEEEEEETTSCSCEECCCC---C--SSCEEEEEESSSCEEEEE------TTEEEEECTTTCCEEE
T ss_pred EEEEEEeccC----ceEEEEEeCCCCcceEecCC---C--CcceeeEcCCCCEEEEEe------CCEEEEecCCceEeee
Confidence 5666554321 24688888876655554311 1 111122334555444442 2468888886555443
Q ss_pred cccCCCCCC------CCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeE
Q 008089 125 PSVRGEGPE------AREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTC 196 (578)
Q Consensus 125 l~~~g~~P~------~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~ 196 (578)
+........ ...-..++.. +++.++++. ...+++++..+.....+.. .+..+..+..
T Consensus 280 l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~------------~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~ 344 (1045)
T 1k32_A 280 IEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS------------RGQAFIQDVSGTYVLKVPE---PLRIRYVRRG 344 (1045)
T ss_dssp CCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE------------TTEEEEECTTSSBEEECSC---CSCEEEEEEC
T ss_pred eccCcccccccccccccccceeeecCCCCCEEEEEE------------cCEEEEEcCCCCceEEccC---CCcceEEeee
Confidence 321100000 0012334443 444444443 1357778877766555431 1110111222
Q ss_pred EEeCCEEEEEecCCCCCcccCceE-EEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEEC
Q 008089 197 SSWKNKIIVIGGEDGHDYYLSDVH-ILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDV 275 (578)
Q Consensus 197 ~~~~~~lyV~GG~~~~~~~~~di~-~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi 275 (578)
.. +++.+++++. ...+| ++|..+.....+.. ........+..-+++.+++++.. ..+++||+
T Consensus 345 ~s-dg~~l~~~s~------~~~l~~~~d~~~~~~~~l~~----~~~~~~~~~~SpDG~~la~~~~~------~~v~~~d~ 407 (1045)
T 1k32_A 345 GD-TKVAFIHGTR------EGDFLGIYDYRTGKAEKFEE----NLGNVFAMGVDRNGKFAVVANDR------FEIMTVDL 407 (1045)
T ss_dssp SS-SEEEEEEEET------TEEEEEEEETTTCCEEECCC----CCCSEEEEEECTTSSEEEEEETT------SEEEEEET
T ss_pred Ec-CCCeEEEEEC------CCceEEEEECCCCCceEecC----CccceeeeEECCCCCEEEEECCC------CeEEEEEC
Confidence 23 5555555543 24688 89998877665531 11122222222345555665432 36999999
Q ss_pred CCCcEEEEEe
Q 008089 276 DSGLWTKVIT 285 (578)
Q Consensus 276 ~t~~W~~l~~ 285 (578)
.++.-..+..
T Consensus 408 ~tg~~~~~~~ 417 (1045)
T 1k32_A 408 ETGKPTVIER 417 (1045)
T ss_dssp TTCCEEEEEE
T ss_pred CCCceEEecc
Confidence 9998777754
No 249
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=64.33 E-value=1.2e+02 Score=30.41 Aligned_cols=75 Identities=11% Similarity=-0.004 Sum_probs=40.9
Q ss_pred cCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCC----CCCCcEEEE
Q 008089 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGM----NPLRDLHIL 115 (578)
Q Consensus 41 ~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~----~~~~~v~~y 115 (578)
.+++.+|+.-+...+. .. .+++||+.+.+-.. .+|.....+-+..- +.++|+..-.... ...+.+.+|
T Consensus 30 ~~~~~~yv~~~~~~~~-~~-~v~v~D~~t~~~~~-----~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 30 ADGRRSYINLPAHHSA-II-QQWVLDAGSGSILG-----HVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred CCCCEEEEeCCcccCC-cc-EEEEEECCCCeEEE-----EecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEE
Confidence 4567788876521111 11 78999998876432 23333222222222 4568887522111 123568899
Q ss_pred ECCCCeE
Q 008089 116 DTSSHTW 122 (578)
Q Consensus 116 D~~t~~W 122 (578)
|+.+.+-
T Consensus 103 D~~t~~~ 109 (373)
T 2mad_H 103 DPVTFLP 109 (373)
T ss_pred ECCCCcE
Confidence 9987643
No 250
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=62.22 E-value=1e+02 Score=28.80 Aligned_cols=73 Identities=12% Similarity=0.169 Sum_probs=42.2
Q ss_pred eEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcE
Q 008089 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDL 112 (578)
Q Consensus 35 hs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v 112 (578)
..++....++ ++.+|. + +.+.++|..+++..+.- ..... ...-.++.. +++.++.|+.++ .+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D------~tV~iWd~~tg~~~~~~-~~~~~--~~~V~~v~~~~~~~~l~sgs~Dg-----~v 91 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-D------NSVYLWSASSGDILQLL-QMEQP--GEYISSVAWIKEGNYLAVGTSSA-----EV 91 (318)
T ss_dssp CBCEEECTTS-EEEEEE-T------TEEEEEETTTCCEEEEE-ECCST--TCCEEEEEECTTSSEEEEEETTS-----EE
T ss_pred ceEEEECCCC-EEEEEe-C------CEEEEEECCCCCEEEEE-EecCC--CCeEEEEEECCCCCEEEEEECCC-----cE
Confidence 3455565566 555542 2 35899999988766532 11111 111122222 667778887654 58
Q ss_pred EEEECCCCeEE
Q 008089 113 HILDTSSHTWI 123 (578)
Q Consensus 113 ~~yD~~t~~W~ 123 (578)
.++|..+.+-.
T Consensus 92 ~iw~~~~~~~~ 102 (318)
T 4ggc_A 92 QLWDVQQQKRL 102 (318)
T ss_dssp EEEETTTTEEE
T ss_pred EEeecCCceeE
Confidence 88999887654
No 251
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=61.29 E-value=1.1e+02 Score=28.79 Aligned_cols=104 Identities=15% Similarity=0.229 Sum_probs=57.0
Q ss_pred ECCEEEEEcccCCCCCCCcEEEEECCC----CeEEe----ccc-CCCCCCC--CcccEEEEE---CCEEEEEccCCCCCC
Q 008089 93 VGENLYVFGGTDGMNPLRDLHILDTSS----HTWIS----PSV-RGEGPEA--REGHSAALV---GKRLFIFGGCGKSSN 158 (578)
Q Consensus 93 ~~~kIYv~GG~~~~~~~~~v~~yD~~t----~~W~~----l~~-~g~~P~~--R~~hs~~~~---~~~lyvfGG~~~~~~ 158 (578)
.++++|+|=| +.+|+||..+ ..... +.. -..+|.. ...--+++. ++++|+|-|
T Consensus 69 ~~g~~~fFkg-------~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG------ 135 (225)
T 3oyo_A 69 EASEAYVFSG-------NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKG------ 135 (225)
T ss_dssp STTEEEEEET-------TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEET------
T ss_pred CCCeEEEEcC-------CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeC------
Confidence 5799999987 4699998632 22211 110 0112321 002223322 579999988
Q ss_pred CCCceeeceEEEEEcCcceEEE----eccCCCCCC-----CCCceeEEE--eCCEEEEEecCCCCCcccCceEEEECC
Q 008089 159 TNDEVYYNDLYILNTETFVWKR----ATTSGNPPS-----ARDSHTCSS--WKNKIIVIGGEDGHDYYLSDVHILDTD 225 (578)
Q Consensus 159 ~~~~~~~ndv~~yd~~t~~W~~----~~~~g~~p~-----~R~~h~~~~--~~~~lyV~GG~~~~~~~~~di~~yD~~ 225 (578)
+..|+||....+... +.. +-+.. +..-.++.. .++++|+|-| +..|+||..
T Consensus 136 -------~~yw~~d~~~~~~~~gPk~I~~-~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG--------~~ywr~d~~ 197 (225)
T 3oyo_A 136 -------NKYVRIAYDSKQLVGNIRNIGD-GFPVLNGTEFESGIDACFASHKEPEAYLFKG--------QNYVRIDFT 197 (225)
T ss_dssp -------TEEEEEETTTTEEEEEEEEHHH-HCGGGTTSTTTTCCSEEEECSSTTEEEEEET--------TEEEEEECC
T ss_pred -------CeEEEEECCCCeecCCCcchhh-cCCCcccccCCCCcCEEEEeCCCCEEEEEEC--------CEEEEEeCC
Confidence 457899876655432 111 11111 222334444 3789999976 347889987
No 252
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=59.64 E-value=1.4e+02 Score=29.66 Aligned_cols=152 Identities=13% Similarity=0.021 Sum_probs=75.9
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd 172 (578)
++.+++.|+.++ .+.+||+.+.+-...- .+ .+....-.+++.. ++.+++.|+. ...+.+||
T Consensus 181 ~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~-~~-~~h~~~v~~~~~s~~~~~l~s~~~-----------dg~i~iwd 242 (437)
T 3gre_A 181 EKSLLVALTNLS-----RVIIFDIRTLERLQII-EN-SPRHGAVSSICIDEECCVLILGTT-----------RGIIDIWD 242 (437)
T ss_dssp SCEEEEEEETTS-----EEEEEETTTCCEEEEE-EC-CGGGCCEEEEEECTTSCEEEEEET-----------TSCEEEEE
T ss_pred CCCEEEEEeCCC-----eEEEEeCCCCeeeEEE-cc-CCCCCceEEEEECCCCCEEEEEcC-----------CCeEEEEE
Confidence 467777777653 5899999876543211 01 0011111222222 4566777773 24578889
Q ss_pred cCcceEEEeccCCCCCCCCCceeEE-E-----eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCC--CC------
Q 008089 173 TETFVWKRATTSGNPPSARDSHTCS-S-----WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSG--MV------ 238 (578)
Q Consensus 173 ~~t~~W~~~~~~g~~p~~R~~h~~~-~-----~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g--~~------ 238 (578)
+.+......-.. + ....-.++ . .++.+++.|+.++ .+.+||+.+..-...-... ..
T Consensus 243 ~~~~~~~~~~~~---~-~~~~v~~~~~~~~~s~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 312 (437)
T 3gre_A 243 IRFNVLIRSWSF---G-DHAPITHVEVCQFYGKNSVIVVGGSSKT------FLTIWNFVKGHCQYAFINSDEQPSMEHFL 312 (437)
T ss_dssp TTTTEEEEEEBC---T-TCEEEEEEEECTTTCTTEEEEEEESTTE------EEEEEETTTTEEEEEEESSSSCCCGGGGS
T ss_pred cCCccEEEEEec---C-CCCceEEEEeccccCCCccEEEEEcCCC------cEEEEEcCCCcEEEEEEcCCCCCccceec
Confidence 887655332110 0 00111111 1 1345666665442 4788888765532221100 00
Q ss_pred C--------------CCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 239 L--------------SPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 239 p--------------~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
| ....-.+++..++.+++.||.+. .|.+||+.+..
T Consensus 313 ~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~------~i~~wd~~~~~ 361 (437)
T 3gre_A 313 PIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATS------SIVMFSLNELS 361 (437)
T ss_dssp CBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGT------EEEEEETTCGG
T ss_pred ccccccccceecccccCCceEEEEECCceEEEecCCCC------eEEEEECCCcc
Confidence 0 00111223344778888888653 48888888765
No 253
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=58.48 E-value=1.2e+02 Score=28.51 Aligned_cols=110 Identities=21% Similarity=0.309 Sum_probs=56.1
Q ss_pred EEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeec---CCCCCCCcceeEEEECCEEEEEcccCCCCCCCcE
Q 008089 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIK---GSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDL 112 (578)
Q Consensus 36 s~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~---g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v 112 (578)
-+++...++.+|+|=| +.+|+++.....+....+. ..+|.. .. ++...++++|+|=| +.+
T Consensus 21 DAi~~~~~g~~yfFkg--------~~~Wr~~~~~~~~~p~~Is~~wpgLP~~-ID-AA~~~~~~~yfFkG-------~~y 83 (219)
T 1hxn_A 21 SAMVSDNHGATYVFSG--------SHYWRLDTNRDGWHSWPIAHQWPQGPST-VD-AAFSWEDKLYLIQD-------TKV 83 (219)
T ss_dssp CEEEECTTSCEEEEET--------TEEEESSSSSCTTCCEEGGGTCTTSCSS-CS-EEEEETTEEEEEET-------TEE
T ss_pred eEEEECCCCcEEEEeC--------CEEEEEcCCCCCCCceEhhhhccCCCCC-cc-EEEEECCcEEEecC-------CEE
Confidence 3444422445898876 3467766543222111111 123432 22 23334899999977 469
Q ss_pred EEEECCC-CeEE-----ecccCCCCCCC--CcccEEEE-E--CCEEEEEccCCCCCCCCCceeeceEEEEEcCc
Q 008089 113 HILDTSS-HTWI-----SPSVRGEGPEA--REGHSAAL-V--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTET 175 (578)
Q Consensus 113 ~~yD~~t-~~W~-----~l~~~g~~P~~--R~~hs~~~-~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t 175 (578)
|+|+..+ .+-. .+...-.+|.. ...--+++ . ++++|+|-| +..|+||..+
T Consensus 84 w~~~~~~~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG-------------~~ywr~d~~~ 144 (219)
T 1hxn_A 84 YVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG-------------RRLWWLDLKS 144 (219)
T ss_dssp EEEECSSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET-------------TEEEEEEGGG
T ss_pred EEEeCCCCceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeC-------------CEEEEEeCCC
Confidence 9999753 2211 11100013332 11222333 2 478999988 4578999765
No 254
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=58.41 E-value=1.2e+02 Score=28.35 Aligned_cols=29 Identities=3% Similarity=0.008 Sum_probs=18.9
Q ss_pred CCEEEEEcCccCCCCccCcEEEEECCCC-cEEEEEe
Q 008089 251 GKNLFVFGGFTDSQNLYDDLYMIDVDSG-LWTKVIT 285 (578)
Q Consensus 251 ~~~iyV~GG~~~~~~~~~dv~~ydi~t~-~W~~l~~ 285 (578)
++++++.||.+. .|.+||+.+. .|..+..
T Consensus 317 ~~~~l~s~~~dg------~v~iw~~~~~~~~~~~~~ 346 (351)
T 3f3f_A 317 TGTILSSAGDDG------KVRLWKATYSNEFKCMSV 346 (351)
T ss_dssp SSCCEEEEETTS------CEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEecCCC------cEEEEecCcCcchhheee
Confidence 455666666532 3888888875 6776654
No 255
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=57.42 E-value=1.4e+02 Score=28.74 Aligned_cols=203 Identities=7% Similarity=-0.070 Sum_probs=96.4
Q ss_pred ccEEEEEcCCCcEEEeeecCCCC---------------CCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEEECCCCeE
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPP---------------TPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P---------------~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~yD~~t~~W 122 (578)
..+++||+.+..+..+....... ....-++++.. +++|||.... ..+++||+.+...
T Consensus 40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~------~~i~~~d~~~g~~ 113 (322)
T 2fp8_A 40 GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY------YHLSVVGSEGGHA 113 (322)
T ss_dssp SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT------TEEEEECTTCEEC
T ss_pred CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC------CCEEEEeCCCCEE
Confidence 46899999887776543211100 00112444444 5789987421 2488999887655
Q ss_pred EecccCCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCC------CceeeceEEEEEcCcceEEEeccCCCCCCCCCce
Q 008089 123 ISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTN------DEVYYNDLYILNTETFVWKRATTSGNPPSARDSH 194 (578)
Q Consensus 123 ~~l~~~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~------~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h 194 (578)
+.+...........-..+++. +++||+.-......... .......+++||+.+.....+......| .
T Consensus 114 ~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p-----~ 188 (322)
T 2fp8_A 114 TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVP-----G 188 (322)
T ss_dssp EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCC-----C
T ss_pred EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccC-----c
Confidence 433211000011112233333 46788864211000000 0011356899999877765543211111 2
Q ss_pred eEEEe-C-CEEEEEecCCCCCcccCceEEEECCCC---ceEEecCCCCCCCCCceeEEEE-eCCEEEEEcCccCCC----
Q 008089 195 TCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTDTL---TWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQ---- 264 (578)
Q Consensus 195 ~~~~~-~-~~lyV~GG~~~~~~~~~di~~yD~~t~---~W~~v~~~g~~p~~R~~hs~v~-~~~~iyV~GG~~~~~---- 264 (578)
.++.. + +.|||.-. ..+.|++|++... .++.+.. .+- -..++. -++.|||........
T Consensus 189 gia~~~dg~~lyv~d~------~~~~I~~~~~~~~~~~~~~~~~~---~~g---P~gi~~d~~G~l~va~~~~~~~~~~~ 256 (322)
T 2fp8_A 189 GAEVSADSSFVLVAEF------LSHQIVKYWLEGPKKGTAEVLVK---IPN---PGNIKRNADGHFWVSSSEELDGNMHG 256 (322)
T ss_dssp EEEECTTSSEEEEEEG------GGTEEEEEESSSTTTTCEEEEEE---CSS---EEEEEECTTSCEEEEEEEETTSSTTS
T ss_pred ceEECCCCCEEEEEeC------CCCeEEEEECCCCcCCccceEEe---CCC---CCCeEECCCCCEEEEecCcccccccC
Confidence 23333 3 45888632 1246889998752 3333322 111 112222 245688765331000
Q ss_pred CccCcEEEEECCCCcEEEEEe
Q 008089 265 NLYDDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 265 ~~~~dv~~ydi~t~~W~~l~~ 285 (578)
.....|++||+....-..+..
T Consensus 257 ~~~~~v~~~d~~G~~~~~~~~ 277 (322)
T 2fp8_A 257 RVDPKGIKFDEFGNILEVIPL 277 (322)
T ss_dssp CEEEEEEEECTTSCEEEEEEC
T ss_pred CCccEEEEECCCCCEEEEEEC
Confidence 012358999987655555543
No 256
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=56.41 E-value=61 Score=35.70 Aligned_cols=152 Identities=15% Similarity=0.190 Sum_probs=73.4
Q ss_pred eEEEECCEEEEEcccCCCCCCCcEEEEECCCC-eEEecccC---CCCCCCCcccEEEE-ECCEEEEEccCCCCCCCCCce
Q 008089 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSH-TWISPSVR---GEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEV 163 (578)
Q Consensus 89 s~~~~~~kIYv~GG~~~~~~~~~v~~yD~~t~-~W~~l~~~---g~~P~~R~~hs~~~-~~~~lyvfGG~~~~~~~~~~~ 163 (578)
+++...+++|+|=|. .+|+++.... ......+. ..+|. ....+... .++++|+|=|
T Consensus 448 Ait~~rg~~yfFKg~-------~yWr~~~~~~~~~~P~~Is~~wp~LP~-~IDAA~~~~~~~k~yFFkG----------- 508 (631)
T 1ck7_A 448 GIAQIRGEIFFFKDR-------FIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG----------- 508 (631)
T ss_dssp EEEECSSSEEEECSS-------EEEEESCTTSCCEEEEEGGGTCTTSCS-SCSBCCEETTTTEEEEEET-----------
T ss_pred eeEecCCcEEEEcCC-------EEEEEcCCCCCCCCceeccccCCCCCc-cceEEEEECCCCEEEEEec-----------
Confidence 445568889999773 5777765442 12111111 12332 12222222 2578999977
Q ss_pred eeceEEEEEcCcc--eE-EEeccCCCCCCCCCceeEEE--eCCEEEEEecCCCCCcccCceEEEECCCCceE-----Eec
Q 008089 164 YYNDLYILNTETF--VW-KRATTSGNPPSARDSHTCSS--WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWK-----ELN 233 (578)
Q Consensus 164 ~~ndv~~yd~~t~--~W-~~~~~~g~~p~~R~~h~~~~--~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~-----~v~ 233 (578)
+.+|+|+..+. -+ +.+...+-+..+..--++.. .++++|+|-| +..|+||..+++-. .+.
T Consensus 509 --~~yWry~~~~l~~GYPk~Is~~G~P~~~~~IDAAf~~~~~gktYFFkG--------~~ywryd~~~~~vd~gYPk~i~ 578 (631)
T 1ck7_A 509 --NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG--------DKFWRYNEVKKKMDPGFPKLIA 578 (631)
T ss_dssp --TEEEEEETTEECTTCCEEGGGGTCCTTCCCCCBCCCCTTTCEEEEEET--------TEEEEEETTTTEECTTCCEETT
T ss_pred --CEEEEECCCccccCCCccchhcCCCCCCCcceeEEEecCCCeEEEEEC--------CEEEEEcCCcccccCCCCcchH
Confidence 45677874321 01 12222222111111112222 3689999966 35889997654311 111
Q ss_pred CCCCCCCCCceeEEEEeC--CEEEEEcCccCCCCccCcEEEEECCCC
Q 008089 234 TSGMVLSPRAGHSTVAFG--KNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (578)
Q Consensus 234 ~~g~~p~~R~~hs~v~~~--~~iyV~GG~~~~~~~~~dv~~ydi~t~ 278 (578)
. .-+..+..-.+++... +++|+|-|. ..|+||..+.
T Consensus 579 ~-~w~G~p~~iDAAf~~~~~g~~YFFkG~--------~Ywr~d~~~~ 616 (631)
T 1ck7_A 579 D-AWNAIPDNLDAVVDLQGGGHSYFFKGA--------YYLKLENQSL 616 (631)
T ss_dssp T-SCSSCCTTCCEEECCTTSCBCEEEETT--------EEECCBTTBT
T ss_pred h-hcCCCCCCCcEeEEEcCCCeEEEEECC--------EEEEEeCccc
Confidence 0 1011222233444433 678888774 2677776554
No 257
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=55.98 E-value=81 Score=34.72 Aligned_cols=152 Identities=14% Similarity=0.155 Sum_probs=73.6
Q ss_pred eEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCC-cEEEeeec---CCCCCCCcceeEEE-ECCEEEEEcccCCCCCC
Q 008089 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQ-TWSQPVIK---GSPPTPRDSHSCTT-VGENLYVFGGTDGMNPL 109 (578)
Q Consensus 35 hs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~-~W~~l~~~---g~~P~~R~~hs~~~-~~~kIYv~GG~~~~~~~ 109 (578)
.-++....+ .+|+|=| +.+|+++.... ......+. +.+|. ....+... .++++|+|=|
T Consensus 446 fDAit~~rg-~~yfFKg--------~~yWr~~~~~~~~~~P~~Is~~wp~LP~-~IDAA~~~~~~~k~yFFkG------- 508 (631)
T 1ck7_A 446 FDGIAQIRG-EIFFFKD--------RFIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG------- 508 (631)
T ss_dssp CSEEEECSS-SEEEECS--------SEEEEESCTTSCCEEEEEGGGTCTTSCS-SCSBCCEETTTTEEEEEET-------
T ss_pred cceeEecCC-cEEEEcC--------CEEEEEcCCCCCCCCceeccccCCCCCc-cceEEEEECCCCEEEEEec-------
Confidence 445555444 5899877 35788776542 22221111 12232 12222222 2678999976
Q ss_pred CcEEEEECCCC--eE-EecccCCCCCCCCcccEEEE---ECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEE----
Q 008089 110 RDLHILDTSSH--TW-ISPSVRGEGPEAREGHSAAL---VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK---- 179 (578)
Q Consensus 110 ~~v~~yD~~t~--~W-~~l~~~g~~P~~R~~hs~~~---~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~---- 179 (578)
+..|+|+-.+. .+ +.+...+ .|.....--+++ .++++|+|-| +..|+||..+..-.
T Consensus 509 ~~yWry~~~~l~~GYPk~Is~~G-~P~~~~~IDAAf~~~~~gktYFFkG-------------~~ywryd~~~~~vd~gYP 574 (631)
T 1ck7_A 509 NEYWIYSASTLERGYPKPLTSLG-LPPDVQRVDAAFNWSKNKKTYIFAG-------------DKFWRYNEVKKKMDPGFP 574 (631)
T ss_dssp TEEEEEETTEECTTCCEEGGGGT-CCTTCCCCCBCCCCTTTCEEEEEET-------------TEEEEEETTTTEECTTCC
T ss_pred CEEEEECCCccccCCCccchhcC-CCCCCCcceeEEEecCCCeEEEEEC-------------CEEEEEcCCcccccCCCC
Confidence 46899985310 01 1111111 222111111222 2578999988 46789997655321
Q ss_pred -EeccCCCCCCCCCceeEEEeC--CEEEEEecCCCCCcccCceEEEECCC
Q 008089 180 -RATTSGNPPSARDSHTCSSWK--NKIIVIGGEDGHDYYLSDVHILDTDT 226 (578)
Q Consensus 180 -~~~~~g~~p~~R~~h~~~~~~--~~lyV~GG~~~~~~~~~di~~yD~~t 226 (578)
.+.. .-+..+..-.++.... +++|+|-|. ..|.||..+
T Consensus 575 k~i~~-~w~G~p~~iDAAf~~~~~g~~YFFkG~--------~Ywr~d~~~ 615 (631)
T 1ck7_A 575 KLIAD-AWNAIPDNLDAVVDLQGGGHSYFFKGA--------YYLKLENQS 615 (631)
T ss_dssp EETTT-SCSSCCTTCCEEECCTTSCBCEEEETT--------EEECCBTTB
T ss_pred cchHh-hcCCCCCCCcEeEEEcCCCeEEEEECC--------EEEEEeCcc
Confidence 1111 1112222333444443 789998763 356666544
No 258
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=55.98 E-value=1.3e+02 Score=30.37 Aligned_cols=145 Identities=17% Similarity=0.150 Sum_probs=71.2
Q ss_pred EEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCc---EEEeeecCCCCCCCcce-eEEEE--CCEEEEEcccCCCCCCCcE
Q 008089 39 AIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQT---WSQPVIKGSPPTPRDSH-SCTTV--GENLYVFGGTDGMNPLRDL 112 (578)
Q Consensus 39 ~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~---W~~l~~~g~~P~~R~~h-s~~~~--~~kIYv~GG~~~~~~~~~v 112 (578)
++.....+||.+-..- ..++++++.... |.. ..+....+.+. +++.. ++.|++..+ . ..+
T Consensus 143 avD~~GnaYVt~s~~~-----~~I~rV~pdG~~~~~~~~---~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~-----g~L 208 (334)
T 2p9w_A 143 AQDRDGNSYVAFALGM-----PAIARVSADGKTVSTFAW---ESGNGGQRPGYSGITFDPHSNKLIAFGG-P-----RAL 208 (334)
T ss_dssp EECTTSCEEEEEEESS-----CEEEEECTTSCCEEEEEE---CCCCSSSCCSCSEEEEETTTTEEEEESS-S-----SSE
T ss_pred EECCCCCEEEeCCCCC-----CeEEEEeCCCCEEeeeee---cCCCcccccCcceEEEeCCCCEEEEEcC-C-----CeE
Confidence 4433345999665321 458999987542 442 11222334443 44555 446777754 2 469
Q ss_pred EEEECCCCeEEecccC--CCCCCCC--cccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCC
Q 008089 113 HILDTSSHTWISPSVR--GEGPEAR--EGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (578)
Q Consensus 113 ~~yD~~t~~W~~l~~~--g~~P~~R--~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p 188 (578)
++||+.+-....++.. |...... .+-...-.+++++++.-. .+..+++-.... |+.....+..|
T Consensus 209 ~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~-----------~~~~~~l~S~Dg-W~sa~~~g~~~ 276 (334)
T 2p9w_A 209 TAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGAR-----------APYAISFRSWDN-WKSANIKKTKR 276 (334)
T ss_dssp EEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEE-----------TTEEEEEECSST-TSEEEEEEEEC
T ss_pred EEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcC-----------CCCEEEEECCCC-cceeEEeeeec
Confidence 9999874322012211 2110101 111122257777544331 123344444444 87765443333
Q ss_pred C---CCCceeEEE----eCCEEEEEecC
Q 008089 189 S---ARDSHTCSS----WKNKIIVIGGE 209 (578)
Q Consensus 189 ~---~R~~h~~~~----~~~~lyV~GG~ 209 (578)
. ++...+.++ .+++||+..+.
T Consensus 277 ~~~~~~g~tt~t~~~~~~~~~iYvv~~~ 304 (334)
T 2p9w_A 277 SELQNSGFTAVADYYQGSEQGLYAVSAF 304 (334)
T ss_dssp GGGGSSCEEEEEEEEETTEEEEEEEECC
T ss_pred CccccCceeEEEEeccccCCeEEEEeee
Confidence 3 344444444 57899998764
No 259
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=54.97 E-value=1.5e+02 Score=28.36 Aligned_cols=201 Identities=11% Similarity=0.041 Sum_probs=97.0
Q ss_pred cCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccC--------------
Q 008089 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTD-------------- 104 (578)
Q Consensus 41 ~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~-------------- 104 (578)
.++++|++....... ....+|++|+.+++...+... +. ...... +++.++++..+
T Consensus 68 pDg~~la~~~~~~~~--~~~~l~~~~~~~g~~~~l~~~---~~----~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~ 138 (347)
T 2gop_A 68 PDGKKIAFMRANEEK--KVSEIWVADLETLSSKKILEA---KN----IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP 138 (347)
T ss_dssp TTSSEEEEEEEETTT--TEEEEEEEETTTTEEEEEEEE---SE----EEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred CCCCEEEEEEeccCC--CcceEEEEECCCCceEEEEcC---CC----ccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence 456655544322111 234699999998887765421 11 122222 44433333221
Q ss_pred ----CC----CCCCcEEEEECCCCeE-EecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCcee-eceEEEEEcC
Q 008089 105 ----GM----NPLRDLHILDTSSHTW-ISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVY-YNDLYILNTE 174 (578)
Q Consensus 105 ----~~----~~~~~v~~yD~~t~~W-~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~-~ndv~~yd~~ 174 (578)
+. .....++++|+.+.+. ..+.. + .....+...+.+++.+..... ..... ...+|.+|
T Consensus 139 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~----~---~~~~~~~spdg~~~~~~~~~~---~~~~~~~~~l~~~d-- 206 (347)
T 2gop_A 139 AWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK----P---RFSSGIWHRDKIVVNVPHREI---IPQYFKFWDIYIWE-- 206 (347)
T ss_dssp CC---------CEEEEEEEETTTTEEEEEEEE----E---TTCEEEEETTEEEEEEECCCS---SCCSSCCEEEEEEE--
T ss_pred eeecCcccccCccceEEEEECCCCeEEeeecC----C---CcccccCCCCeEEEEEecccc---cccccccccEEEeC--
Confidence 10 0135799999998887 55542 1 233444445445444432110 00002 45788888
Q ss_pred cceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCCC--CcccCceEEEECCCCceEEecCCCCCCCCCceeE-EEEeC
Q 008089 175 TFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGH--DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHS-TVAFG 251 (578)
Q Consensus 175 t~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~~--~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs-~v~~~ 251 (578)
+..++.+... ........+++.+++.+.... ......++.+| +..+..+.. . ....... .+..
T Consensus 207 ~~~~~~l~~~-------~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~---~-~~~~~~~~~~~s- 272 (347)
T 2gop_A 207 DGKEEKMFEK-------VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD---E-VDRGVGQAKIKD- 272 (347)
T ss_dssp TTEEEEEEEE-------ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST---T-CCSEEEEEEEET-
T ss_pred CCceEEeccC-------cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc---c-CCcccCCccEEc-
Confidence 6777766421 112222446655555443221 11245799999 666666543 1 1122222 2223
Q ss_pred CEEEEEcCccCCCCccCcEEEEECCCCcEEEE
Q 008089 252 KNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (578)
Q Consensus 252 ~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l 283 (578)
+.+|+.+.... ...|| ++ ++....+
T Consensus 273 dg~~~~~~~~~----~~~l~-~~--~g~~~~~ 297 (347)
T 2gop_A 273 GKVYFTLFEEG----SVNLY-IW--DGEIKPI 297 (347)
T ss_dssp TEEEEEEEETT----EEEEE-EE--SSSEEEE
T ss_pred CcEEEEEecCC----cEEEE-Ec--CCceEEE
Confidence 55666654432 23577 77 4555544
No 260
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=54.53 E-value=1.7e+02 Score=28.96 Aligned_cols=22 Identities=14% Similarity=0.293 Sum_probs=16.0
Q ss_pred EEEEEecCCCCCcccCceEEEECCCCce
Q 008089 202 KIIVIGGEDGHDYYLSDVHILDTDTLTW 229 (578)
Q Consensus 202 ~lyV~GG~~~~~~~~~di~~yD~~t~~W 229 (578)
.+++.|+.++ .+.+||+.+...
T Consensus 240 ~~l~s~~~dg------~i~iwd~~~~~~ 261 (447)
T 3dw8_B 240 NTFVYSSSKG------TIRLCDMRASAL 261 (447)
T ss_dssp TEEEEEETTS------CEEEEETTTCSS
T ss_pred cEEEEEeCCC------eEEEEECcCCcc
Confidence 6888887653 488899877653
No 261
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=53.84 E-value=1.7e+02 Score=28.63 Aligned_cols=70 Identities=7% Similarity=0.014 Sum_probs=36.0
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCCcEEEE
Q 008089 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHIL 115 (578)
Q Consensus 37 ~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~y 115 (578)
++.+..++.+++.|+.+ .+.+||..+.+-.... ... ......... .+.+.+.||.++ .+.++
T Consensus 24 ~v~fs~dg~~la~g~~~-------~~~iw~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~d~-----~v~iW 86 (355)
T 3vu4_A 24 DYEFNQDQSCLILSTLK-------SFEIYNVHPVAHIMSQ---EMR--HLSKVRMLHRTNYVAFVTGVKE-----VVHIW 86 (355)
T ss_dssp EEEECTTSSEEEEECSS-------EEEEEEETTEEEEEEE---ECS--CCCEEEECTTSSEEEEECSSTT-----EEEEE
T ss_pred EEEECCCCCEEEEEcCC-------EEEEEecCCcceeeee---ecC--CeEEEEEcCCCCEEEEEECCcc-----EEEEE
Confidence 55555444566666532 2457776654332211 111 111222222 445667777542 68999
Q ss_pred ECCCCeEE
Q 008089 116 DTSSHTWI 123 (578)
Q Consensus 116 D~~t~~W~ 123 (578)
|..+.+-.
T Consensus 87 d~~~~~~~ 94 (355)
T 3vu4_A 87 DDVKKQDV 94 (355)
T ss_dssp ETTTTEEE
T ss_pred ECCCCcEE
Confidence 99887654
No 262
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=53.77 E-value=2.8e+02 Score=31.10 Aligned_cols=201 Identities=11% Similarity=0.128 Sum_probs=99.5
Q ss_pred cEEEEEcCCCcEEEeeecCCCCC-----CCcceeEEEE---CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCC
Q 008089 61 QVHVFDTVNQTWSQPVIKGSPPT-----PRDSHSCTTV---GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGP 132 (578)
Q Consensus 61 ~v~~yD~~t~~W~~l~~~g~~P~-----~R~~hs~~~~---~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P 132 (578)
.+|+-+-.-.+|..+. ..+. .+.-+++++. .+.+|+..|.........+++=+-.-.+|+++......+
T Consensus 38 gv~rS~DgG~tW~~~~---~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~ 114 (789)
T 1sqj_A 38 GAYRWDAGTSKWIPLN---DFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMG 114 (789)
T ss_dssp CEEEEETTTTEEEESC---TTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCC
T ss_pred CEEEecCCCCCeeECc---cCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccEEEEECCCCCcceeccCCcccC
Confidence 4788777788999864 2111 1223344433 246888766422111134555444457899875321111
Q ss_pred ---CCC-cccEEEEEC---CEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEe----CC
Q 008089 133 ---EAR-EGHSAALVG---KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW----KN 201 (578)
Q Consensus 133 ---~~R-~~hs~~~~~---~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~----~~ 201 (578)
..| ..+.+++.. +.+|+ |.. ...+++-+-.-.+|+.+.........-.......+ .+
T Consensus 115 ~~~~~~~~~~~iav~p~~~~~v~~-g~~-----------~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~ 182 (789)
T 1sqj_A 115 ANDMGRNNGERLAVNPFNSNEVWM-GTR-----------TEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNG 182 (789)
T ss_dssp TTSTTTTSCCCEEEETTEEEEEEE-ECS-----------SSCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTT
T ss_pred ccCCCccceeEEEEcCCCCCEEEE-Eec-----------cCCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCC
Confidence 122 234455542 45666 331 13355555556899998642111111122222222 24
Q ss_pred EEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCC----------------CceeEEEEe--CCEEEEEcCccCC
Q 008089 202 KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSP----------------RAGHSTVAF--GKNLFVFGGFTDS 263 (578)
Q Consensus 202 ~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~----------------R~~hs~v~~--~~~iyV~GG~~~~ 263 (578)
.||+..... ..+++=.=...+|+.+.. .+.. ...|.+++. ++.||+..+....
T Consensus 183 ~~~~~~~~~------~~v~~S~DgG~TW~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~ 253 (789)
T 1sqj_A 183 TIYASATAP------QGMYVTHDGGVSWEPVAG---QPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPG 253 (789)
T ss_dssp CEEEEESST------TCEEEESSTTSSCEECTT---CCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCS
T ss_pred EEEEEEcCC------CeEEEEcCCCcCcccCCC---CcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCC
Confidence 666654321 123332224567999863 2221 111444333 6788887422110
Q ss_pred --CCccCcEEEEECCCCcEEEEEe
Q 008089 264 --QNLYDDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 264 --~~~~~dv~~ydi~t~~W~~l~~ 285 (578)
......|++.+-...+|+.+..
T Consensus 254 p~~g~~g~l~~S~DgG~tW~~~~~ 277 (789)
T 1sqj_A 254 PWGVTFGEVWRQNRTSGAWDDITP 277 (789)
T ss_dssp SSCCCCCCEEEEETTTCCEEECCC
T ss_pred CCCCCCceEEEEeCCCCceEECcC
Confidence 0123568999988999999865
No 263
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=53.58 E-value=1.5e+02 Score=28.01 Aligned_cols=138 Identities=18% Similarity=0.240 Sum_probs=68.4
Q ss_pred EECCEEEEEcccCCCCCCCcEEEEECC-CCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEE
Q 008089 92 TVGENLYVFGGTDGMNPLRDLHILDTS-SHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLY 169 (578)
Q Consensus 92 ~~~~kIYv~GG~~~~~~~~~v~~yD~~-t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~ 169 (578)
..++.||+... -..+++||.. ...|.... +.. ...+.+.. ++.||+... ...++
T Consensus 105 ~~~~~l~v~t~------~~~l~~~d~~g~~~~~~~~-----~~~-~~~~~~~~~~g~l~vgt~------------~~~l~ 160 (330)
T 3hxj_A 105 IFEDILYVTSM------DGHLYAINTDGTEKWRFKT-----KKA-IYATPIVSEDGTIYVGSN------------DNYLY 160 (330)
T ss_dssp EETTEEEEECT------TSEEEEECTTSCEEEEEEC-----SSC-CCSCCEECTTSCEEEECT------------TSEEE
T ss_pred EECCEEEEEec------CCEEEEEcCCCCEEEEEcC-----CCc-eeeeeEEcCCCEEEEEcC------------CCEEE
Confidence 34888887532 1358999987 34575432 111 12222333 566666321 24688
Q ss_pred EEEcCc-ceEEEeccCCCCCCCCCceeEEE-eCCEEEEEecCCCCCcccCceEEEECCC-CceEEecCCCCCCCCCceeE
Q 008089 170 ILNTET-FVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDT-LTWKELNTSGMVLSPRAGHS 246 (578)
Q Consensus 170 ~yd~~t-~~W~~~~~~g~~p~~R~~h~~~~-~~~~lyV~GG~~~~~~~~~di~~yD~~t-~~W~~v~~~g~~p~~R~~hs 246 (578)
+||+.. ..|..... ... ..+.+. .++.||+-. ..+++||... ..|+.... .. ...+
T Consensus 161 ~~d~~g~~~~~~~~~-----~~~-~~~~~~d~~g~l~v~t---------~~l~~~d~~g~~~~~~~~~-----~~-~~~~ 219 (330)
T 3hxj_A 161 AINPDGTEKWRFKTN-----DAI-TSAASIGKDGTIYFGS---------DKVYAINPDGTEKWNFYAG-----YW-TVTR 219 (330)
T ss_dssp EECTTSCEEEEEECS-----SCC-CSCCEECTTCCEEEES---------SSEEEECTTSCEEEEECCS-----SC-CCSC
T ss_pred EECCCCCEeEEEecC-----CCc-eeeeEEcCCCEEEEEe---------CEEEEECCCCcEEEEEccC-----Cc-ceec
Confidence 899872 23654321 111 222333 366777643 3488888432 34654322 11 1122
Q ss_pred EEEe-CCEEEEEcCccCCCCccCcEEEEECCCCc-EE
Q 008089 247 TVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGL-WT 281 (578)
Q Consensus 247 ~v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~~-W~ 281 (578)
.+.. ++.||+.. . -..+++||..... |.
T Consensus 220 ~~~~~~g~l~v~t-~------~~gl~~~~~~g~~~~~ 249 (330)
T 3hxj_A 220 PAISEDGTIYVTS-L------DGHLYAINPDGTEKWR 249 (330)
T ss_dssp CEECTTSCEEEEE-T------TTEEEEECTTSCEEEE
T ss_pred eEECCCCeEEEEc-C------CCeEEEECCCCCEeEE
Confidence 2333 34666642 1 1248888875544 44
No 264
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=53.39 E-value=97 Score=31.49 Aligned_cols=106 Identities=8% Similarity=0.033 Sum_probs=59.1
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCC--cE-EEeeecCCCCCC--CcceeEEEE--CCEEEEEcccCCCCCCCcEEEE
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TW-SQPVIKGSPPTP--RDSHSCTTV--GENLYVFGGTDGMNPLRDLHIL 115 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~--~W-~~l~~~g~~P~~--R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~y 115 (578)
++++|+|-| +.+|+|+.... .+ +.+... .+|.. ... ++... ++++|+|-| +..|+|
T Consensus 236 ~g~~~fFkg--------~~yWr~~~~~~~~gyPk~I~~~-GlP~~~~~ID-AA~~~~~~~~~yfFkG-------~~yw~y 298 (365)
T 3ba0_A 236 RNQVFLFKD--------DKYWLISNLRPEPNYPKSIHSF-GFPNFVKKID-AAVFNPRFYRTYFFVD-------NQYWRY 298 (365)
T ss_dssp GTEEEEEET--------TEEEECSTTSCTTTCSEETTTT-TCCTTCCCCC-EEEEETTTTEEEEEET-------TEEEEE
T ss_pred CCEEEEEeC--------CEEEEEcCCcccCCCCceeeec-cCCCCCCCcC-EEEEeCCCCEEEEEEC-------CEEEEE
Confidence 457899876 45778765421 11 122111 13331 222 23333 579999977 479999
Q ss_pred ECCCCeEEe-----ccc-CCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEE
Q 008089 116 DTSSHTWIS-----PSV-RGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR 180 (578)
Q Consensus 116 D~~t~~W~~-----l~~-~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~ 180 (578)
|..+.+-.. +.. -..+| ..--++... ++++|+|=| +..|+||..+.+-..
T Consensus 299 d~~~~~v~~gyPk~I~~~f~g~p--~~iDaA~~~~~g~~YfFkg-------------~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 299 DERRQMMDPGYPKLITKNFQGIG--PKIDAVFYSKNKYYYFFQG-------------SNQFEYDFLLQRITK 355 (365)
T ss_dssp ETTTTEECSSCCCCHHHHSTTCC--SSCSEEEEETTTEEEEEET-------------TEEEEEETTTTEEEE
T ss_pred eCCcceecCCCCcchhhcCCCCC--CccceeeEecCCcEEEEeC-------------CEEEEEECCccEEec
Confidence 987765321 100 00122 222344444 789999988 458899988776554
No 265
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=51.87 E-value=1.7e+02 Score=28.02 Aligned_cols=135 Identities=9% Similarity=0.044 Sum_probs=67.9
Q ss_pred cEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCCCCCcEEEEECCCCe---EEeccc-CCCCCCC-
Q 008089 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHT---WISPSV-RGEGPEA- 134 (578)
Q Consensus 61 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~~~~~v~~yD~~t~~---W~~l~~-~g~~P~~- 134 (578)
.+++||..+.+...+.. .+..+.....+.. ++.+|+.-- ....+|++|+.+.. |..-.. ....+..
T Consensus 96 ~v~~~d~~~g~~~~~~~---~~~~~~~~g~~~~~~~~~~v~d~-----~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~ 167 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLT---LPDAIFLNGITPLSDTQYLTADS-----YRGAIWLIDVVQPSGSIWLEHPMLARSNSESV 167 (306)
T ss_dssp EEEEEECTTSCEEEEEE---CTTCSCEEEEEESSSSEEEEEET-----TTTEEEEEETTTTEEEEEEECGGGSCSSTTCC
T ss_pred eEEEEcCCCCeEEEEEe---CCCccccCcccccCCCcEEEEEC-----CCCeEEEEeCCCCcEeEEEECCccccccccCC
Confidence 48888988887766542 2333444444433 556777532 12479999987652 211110 0000111
Q ss_pred -CcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCc-ceE---EEeccCCCCCCCCCceeEEE-eCCEEEEEec
Q 008089 135 -REGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET-FVW---KRATTSGNPPSARDSHTCSS-WKNKIIVIGG 208 (578)
Q Consensus 135 -R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t-~~W---~~~~~~g~~p~~R~~h~~~~-~~~~lyV~GG 208 (578)
.....+...++.||+.-- ..+.+++|++.. .+. +.+.. ...+ ..+++ -++.|||.-.
T Consensus 168 ~~~pngis~dg~~lyv~d~-----------~~~~I~~~~~~~~g~~~~~~~~~~---~~~P---~gi~vd~dG~l~va~~ 230 (306)
T 2p4o_A 168 FPAANGLKRFGNFLYVSNT-----------EKMLLLRIPVDSTDKPGEPEIFVE---QTNI---DDFAFDVEGNLYGATH 230 (306)
T ss_dssp SCSEEEEEEETTEEEEEET-----------TTTEEEEEEBCTTSCBCCCEEEEE---SCCC---SSEEEBTTCCEEEECB
T ss_pred CCcCCCcCcCCCEEEEEeC-----------CCCEEEEEEeCCCCCCCccEEEec---cCCC---CCeEECCCCCEEEEeC
Confidence 112223334567888643 135788998864 221 11111 0111 22333 3677888643
Q ss_pred CCCCCcccCceEEEECCC
Q 008089 209 EDGHDYYLSDVHILDTDT 226 (578)
Q Consensus 209 ~~~~~~~~~di~~yD~~t 226 (578)
. .+.|.+||+..
T Consensus 231 ~------~~~V~~~~~~G 242 (306)
T 2p4o_A 231 I------YNSVVRIAPDR 242 (306)
T ss_dssp T------TCCEEEECTTC
T ss_pred C------CCeEEEECCCC
Confidence 2 24588999863
No 266
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=51.78 E-value=1.7e+02 Score=28.08 Aligned_cols=199 Identities=10% Similarity=-0.050 Sum_probs=97.4
Q ss_pred CCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeec-CCCCCCCcceeEEEE--CCEEEEEcccCC------------CC
Q 008089 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIK-GSPPTPRDSHSCTTV--GENLYVFGGTDG------------MN 107 (578)
Q Consensus 43 g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~-g~~P~~R~~hs~~~~--~~kIYv~GG~~~------------~~ 107 (578)
++.|||.-.. ..+++||+.++..+.+... ...+. ..-..++.. +++||+.-.... ..
T Consensus 91 ~g~l~v~d~~-------~~i~~~d~~~g~~~~~~~~~~~~~~-~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~ 162 (322)
T 2fp8_A 91 NNQLYIVDCY-------YHLSVVGSEGGHATQLATSVDGVPF-KWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSD 162 (322)
T ss_dssp TTEEEEEETT-------TEEEEECTTCEECEEEESEETTEEC-SCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTC
T ss_pred CCcEEEEECC-------CCEEEEeCCCCEEEEecccCCCCcc-cccceEEEecCCCEEEEECCcccccccccceehcccC
Confidence 4568886321 2388899877655544211 01111 112233333 467888642110 01
Q ss_pred CCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEEC--CEEEEEccCCCCCCCCCceeeceEEEEEcCc---ceEEEec
Q 008089 108 PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG--KRLFIFGGCGKSSNTNDEVYYNDLYILNTET---FVWKRAT 182 (578)
Q Consensus 108 ~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~--~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t---~~W~~~~ 182 (578)
....+++||+.+.+...+... + ..-..+++.. +.|||.-. ..+.+++|++.. ..++.+.
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~~--~---~~p~gia~~~dg~~lyv~d~-----------~~~~I~~~~~~~~~~~~~~~~~ 226 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLKE--L---HVPGGAEVSADSSFVLVAEF-----------LSHQIVKYWLEGPKKGTAEVLV 226 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEEE--E---SCCCEEEECTTSSEEEEEEG-----------GGTEEEEEESSSTTTTCEEEEE
T ss_pred CCceEEEEeCCCCEEEEeccC--C---ccCcceEECCCCCEEEEEeC-----------CCCeEEEEECCCCcCCccceEE
Confidence 235699999988776543211 1 1122344432 35888633 135688898875 2343332
Q ss_pred cCCCCCCCCCceeEEEe-CCEEEEEecCCCCC----cccCceEEEECCCCceEEecCCCCCCCCCceeEEEEeCCEEEEE
Q 008089 183 TSGNPPSARDSHTCSSW-KNKIIVIGGEDGHD----YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVF 257 (578)
Q Consensus 183 ~~g~~p~~R~~h~~~~~-~~~lyV~GG~~~~~----~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyV~ 257 (578)
. .+. -..+++- ++.|||........ .....+.+||+....-..+......+ ...-.+++..+++|||.
T Consensus 227 ~---~~g---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~-~~~~~~~~~~~g~L~v~ 299 (322)
T 2fp8_A 227 K---IPN---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFA-GEHFEQIQEHDGLLYIG 299 (322)
T ss_dssp E---CSS---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTT-TSCCCEEEEETTEEEEE
T ss_pred e---CCC---CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCc-cccceEEEEeCCEEEEe
Confidence 1 111 1223332 56788865321000 01245889999766555554321111 12223344567888886
Q ss_pred cCccCCCCccCcEEEEECCCC
Q 008089 258 GGFTDSQNLYDDLYMIDVDSG 278 (578)
Q Consensus 258 GG~~~~~~~~~dv~~ydi~t~ 278 (578)
... .+.|.+|++..+
T Consensus 300 ~~~------~~~i~~~~~~~~ 314 (322)
T 2fp8_A 300 TLF------HGSVGILVYDKK 314 (322)
T ss_dssp CSS------CSEEEEEEC---
T ss_pred ecC------CCceEEEecccc
Confidence 533 234788886643
No 267
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=51.52 E-value=1.6e+02 Score=27.85 Aligned_cols=143 Identities=8% Similarity=-0.008 Sum_probs=72.5
Q ss_pred CEEEEEcccCCCCCCCcEEEEECCCCeEEe-cccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEE
Q 008089 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWIS-PSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (578)
Q Consensus 95 ~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~-l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd 172 (578)
+++++.|+.++ .+.+||+.+..... ....+ ....-.+++.. ++.+++.|+. ...+.++|
T Consensus 54 g~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~~~-----------dg~v~iwd 114 (368)
T 3mmy_A 54 GNFLIAGSWAN-----DVRCWEVQDSGQTIPKAQQM---HTGPVLDVCWSDDGSKVFTASC-----------DKTAKMWD 114 (368)
T ss_dssp SEEEEEEETTS-----EEEEEEECTTSCEEEEEEEE---CSSCEEEEEECTTSSEEEEEET-----------TSEEEEEE
T ss_pred ceEEEEECCCC-----cEEEEEcCCCCceeEEEecc---ccCCEEEEEECcCCCEEEEEcC-----------CCcEEEEE
Confidence 47888887653 47888877632211 11110 00111122222 4556666662 24578889
Q ss_pred cCcceEEEeccCCCCCCCCCceeEEE---eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEE
Q 008089 173 TETFVWKRATTSGNPPSARDSHTCSS---WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA 249 (578)
Q Consensus 173 ~~t~~W~~~~~~g~~p~~R~~h~~~~---~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~ 249 (578)
+.+......... ...-.++.. .++.+++.|+.++ .+.+||+.+.+-...-. ......+...
T Consensus 115 ~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~-----~~~~~~~~~~ 178 (368)
T 3mmy_A 115 LSSNQAIQIAQH-----DAPVKTIHWIKAPNYSCVMTGSWDK------TLKFWDTRSSNPMMVLQ-----LPERCYCADV 178 (368)
T ss_dssp TTTTEEEEEEEC-----SSCEEEEEEEECSSCEEEEEEETTS------EEEEECSSCSSCSEEEE-----CSSCEEEEEE
T ss_pred cCCCCceeeccc-----cCceEEEEEEeCCCCCEEEEccCCC------cEEEEECCCCcEEEEEe-----cCCCceEEEe
Confidence 988776554321 111122222 2667788887653 48889987654222111 1122333344
Q ss_pred eCCEEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 250 FGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 250 ~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
..+.+++.++. ..+.+||+....
T Consensus 179 ~~~~~~~~~~~-------~~i~~~~~~~~~ 201 (368)
T 3mmy_A 179 IYPMAVVATAE-------RGLIVYQLENQP 201 (368)
T ss_dssp ETTEEEEEEGG-------GCEEEEECSSSC
T ss_pred cCCeeEEEeCC-------CcEEEEEecccc
Confidence 45555444332 247888887764
No 268
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=49.20 E-value=1.8e+02 Score=27.71 Aligned_cols=207 Identities=10% Similarity=0.050 Sum_probs=99.7
Q ss_pred CCCCcceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE-CCEEEEEcccCCCC
Q 008089 29 PGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMN 107 (578)
Q Consensus 29 P~~R~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~kIYv~GG~~~~~ 107 (578)
|...+.+..++..++ .||+.-- ....+++||+....-.... . + ..-++++.. ++++|+......
T Consensus 29 p~~~~pegia~~~~g-~lyv~d~------~~~~I~~~d~~g~~~~~~~-~---~--~~p~gia~~~dG~l~vad~~~~-- 93 (306)
T 2p4o_A 29 PVNTFLENLASAPDG-TIFVTNH------EVGEIVSITPDGNQQIHAT-V---E--GKVSGLAFTSNGDLVATGWNAD-- 93 (306)
T ss_dssp CTTCCEEEEEECTTS-CEEEEET------TTTEEEEECTTCCEEEEEE-C---S--SEEEEEEECTTSCEEEEEECTT--
T ss_pred CCCCCcceEEECCCC-CEEEEeC------CCCeEEEECCCCceEEEEe-C---C--CCceeEEEcCCCcEEEEeccCC--
Confidence 444444544444444 4888642 1246899998764322211 1 1 122333333 567888753211
Q ss_pred CCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcce---EEEecc
Q 008089 108 PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV---WKRATT 183 (578)
Q Consensus 108 ~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~---W~~~~~ 183 (578)
...+++||..+.+.+.+.. .+..+.....+.. ++.+|+.-- ....+|++|+.+.. |..-..
T Consensus 94 -~~~v~~~d~~~g~~~~~~~---~~~~~~~~g~~~~~~~~~~v~d~-----------~~g~i~~~d~~~~~~~v~~~~~~ 158 (306)
T 2p4o_A 94 -SIPVVSLVKSDGTVETLLT---LPDAIFLNGITPLSDTQYLTADS-----------YRGAIWLIDVVQPSGSIWLEHPM 158 (306)
T ss_dssp -SCEEEEEECTTSCEEEEEE---CTTCSCEEEEEESSSSEEEEEET-----------TTTEEEEEETTTTEEEEEEECGG
T ss_pred -cceEEEEcCCCCeEEEEEe---CCCccccCcccccCCCcEEEEEC-----------CCCeEEEEeCCCCcEeEEEECCc
Confidence 1248899988887765432 2333443344332 456777532 12468899987542 211110
Q ss_pred CC-CCCCC--CCceeEEEeCCEEEEEecCCCCCcccCceEEEECCC-Cce---EEecCCCCCCCCCceeEEEEeCCEEEE
Q 008089 184 SG-NPPSA--RDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDT-LTW---KELNTSGMVLSPRAGHSTVAFGKNLFV 256 (578)
Q Consensus 184 ~g-~~p~~--R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t-~~W---~~v~~~g~~p~~R~~hs~v~~~~~iyV 256 (578)
.. ..+.. .....+..-++.||+.-- ..+.|++||+.. .+. ..+.. ...| ..-++.-+++|||
T Consensus 159 ~~~~~~~~~~~~pngis~dg~~lyv~d~------~~~~I~~~~~~~~g~~~~~~~~~~---~~~P--~gi~vd~dG~l~v 227 (306)
T 2p4o_A 159 LARSNSESVFPAANGLKRFGNFLYVSNT------EKMLLLRIPVDSTDKPGEPEIFVE---QTNI--DDFAFDVEGNLYG 227 (306)
T ss_dssp GSCSSTTCCSCSEEEEEEETTEEEEEET------TTTEEEEEEBCTTSCBCCCEEEEE---SCCC--SSEEEBTTCCEEE
T ss_pred cccccccCCCCcCCCcCcCCCEEEEEeC------CCCEEEEEEeCCCCCCCccEEEec---cCCC--CCeEECCCCCEEE
Confidence 00 00111 111223333567888642 235689999864 221 11111 1111 1112223467777
Q ss_pred EcCccCCCCccCcEEEEECCCCcEEEE
Q 008089 257 FGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (578)
Q Consensus 257 ~GG~~~~~~~~~dv~~ydi~t~~W~~l 283 (578)
.-.. .+.|.+||+. .+...+
T Consensus 228 a~~~------~~~V~~~~~~-G~~~~~ 247 (306)
T 2p4o_A 228 ATHI------YNSVVRIAPD-RSTTII 247 (306)
T ss_dssp ECBT------TCCEEEECTT-CCEEEE
T ss_pred EeCC------CCeEEEECCC-CCEEEE
Confidence 6432 2458999986 444443
No 269
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=48.46 E-value=2.7e+02 Score=29.53 Aligned_cols=193 Identities=11% Similarity=0.146 Sum_probs=94.5
Q ss_pred EEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEEECCCCeE
Q 008089 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (578)
Q Consensus 45 ~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~yD~~t~~W 122 (578)
.+++.|+.+ ..+.++|..+.+.... ..+. ...-.++.+ ++++++.||.++ .+.++|..+.+.
T Consensus 161 ~~l~s~s~D------~~v~lwd~~~~~~~~~-l~~H----~~~V~~v~fspdg~~las~s~D~-----~i~lwd~~~g~~ 224 (611)
T 1nr0_A 161 FRIISGSDD------NTVAIFEGPPFKFKST-FGEH----TKFVHSVRYNPDGSLFASTGGDG-----TIVLYNGVDGTK 224 (611)
T ss_dssp CEEEEEETT------SCEEEEETTTBEEEEE-ECCC----SSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCE
T ss_pred eEEEEEeCC------CeEEEEECCCCeEeee-eccc----cCceEEEEECCCCCEEEEEECCC-----cEEEEECCCCcE
Confidence 345666643 3477888766544331 1111 111122222 567788887654 488889877654
Q ss_pred EecccCCCC---CCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEE
Q 008089 123 ISPSVRGEG---PEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS 198 (578)
Q Consensus 123 ~~l~~~g~~---P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~ 198 (578)
...-..... .....-.+++.. ++++++.||. -..+.++|+.+.+....-..+. ........+.
T Consensus 225 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~-----------D~~v~lWd~~~~~~~~~~~~~~--~~~~~~~~~~ 291 (611)
T 1nr0_A 225 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA-----------DKTIKIWNVATLKVEKTIPVGT--RIEDQQLGII 291 (611)
T ss_dssp EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET-----------TSEEEEEETTTTEEEEEEECCS--SGGGCEEEEE
T ss_pred eeeeccccccccccCCCEEEEEECCCCCEEEEEeC-----------CCeEEEEeCCCCceeeeecCCC--CccceeEEEE
Confidence 321100000 001111122222 4566666763 2457788988776644321111 0111122333
Q ss_pred eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCccCCCCccCcEEEEECCC
Q 008089 199 WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (578)
Q Consensus 199 ~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~~~~~~~~~dv~~ydi~t 277 (578)
.++..++.++.++ .+..+|+.+..-..... + ....-.+++.. +++.++.|+.+. .|.+||+.+
T Consensus 292 ~~~~~l~s~s~d~------~i~~~~~~~~~~~~~~~-g---h~~~v~~l~~spdg~~l~s~s~D~------~v~~Wd~~~ 355 (611)
T 1nr0_A 292 WTKQALVSISANG------FINFVNPELGSIDQVRY-G---HNKAITALSSSADGKTLFSADAEG------HINSWDIST 355 (611)
T ss_dssp ECSSCEEEEETTC------CEEEEETTTTEEEEEEC-C---CSSCEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred EcCCEEEEEeCCC------cEEEEeCCCCCcceEEc-C---CCCCEEEEEEeCCCCEEEEEeCCC------cEEEEECCC
Confidence 4566666666443 36778887665322211 1 11111122222 456667776543 488999998
Q ss_pred CcEEE
Q 008089 278 GLWTK 282 (578)
Q Consensus 278 ~~W~~ 282 (578)
.....
T Consensus 356 ~~~~~ 360 (611)
T 1nr0_A 356 GISNR 360 (611)
T ss_dssp CCEEE
T ss_pred Cceee
Confidence 76544
No 270
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=46.90 E-value=3.2e+02 Score=30.21 Aligned_cols=171 Identities=8% Similarity=-0.010 Sum_probs=85.8
Q ss_pred cceEEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCC--cE--EEeeecCCCCCCCcceeEE-EECCEEEEEcccCCCC
Q 008089 33 WGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TW--SQPVIKGSPPTPRDSHSCT-TVGENLYVFGGTDGMN 107 (578)
Q Consensus 33 ~ghs~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~--~W--~~l~~~g~~P~~R~~hs~~-~~~~kIYv~GG~~~~~ 107 (578)
+........++++|++..... ..+++|++|+.+. .+ ..+.. ... ...++.. ..++.||+..-.+ ..
T Consensus 272 ~~~~~~~SpDg~~l~~~~~~~----~~~~l~~~d~~~~~~~~~~~~l~~--~~~--~~~~s~~~~~g~~l~~~t~~~-~a 342 (751)
T 2xe4_A 272 FSAFMYKAADTNTLCIGSQSP----ETAEVHLLDLRKGNAHNTLEIVRP--REK--GVRYDVQMHGTSHLVILTNEG-GA 342 (751)
T ss_dssp CEEEEEECTTSSEEEEEEECS----SCEEEEEEESSSCTTCCCEEESSC--CCT--TCCEEEEEETTTEEEEEECTT-TC
T ss_pred eEEEEEECCCCCEEEEEecCC----CCceEEEEECCCCCCCceeEEeec--CCC--CceEEEeeeeCCEEEEEeCCC-CC
Confidence 333333445666666655422 2467999999865 45 55421 111 1112222 2377888886544 12
Q ss_pred CCCcEEEEECCC-CeEEe-cccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEc-------Ccce-
Q 008089 108 PLRDLHILDTSS-HTWIS-PSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT-------ETFV- 177 (578)
Q Consensus 108 ~~~~v~~yD~~t-~~W~~-l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~-------~t~~- 177 (578)
....++.+|+.+ ..|.. +-... . ...-......++.|++..-.. -...++++|+ .+..
T Consensus 343 ~~~~L~~~d~~~~~~~~~~li~~~--~-~~~l~~~~~~~~~lv~~~~~~---------g~~~l~~~dl~~~~~~~~~g~~ 410 (751)
T 2xe4_A 343 VNHKLLIAPRGQPSDWSHVLVDHS--E-DVFMESIAVRSNYLVVAGRRA---------GLTRIWTMMADSQDGVFKAGTG 410 (751)
T ss_dssp TTCEEEEEETTSTTCCCCEEECCC--S-SEEEEEEEECSSEEEEEEEET---------TEEEEEEEECCTTTSCCCTTTC
T ss_pred CCcEEEEEcCCCcccceeeEECCC--C-CcEEEEEEEECCEEEEEEEeC---------CEEEEEEEecccccccccCCcc
Confidence 335799999876 57865 32111 1 111122333466666654311 1467888886 3333
Q ss_pred EEEeccCCCCCCCCCceeEEE-------eC-CEEE-EEecCCCCCcccCceEEEECCCCceEEecC
Q 008089 178 WKRATTSGNPPSARDSHTCSS-------WK-NKII-VIGGEDGHDYYLSDVHILDTDTLTWKELNT 234 (578)
Q Consensus 178 W~~~~~~g~~p~~R~~h~~~~-------~~-~~ly-V~GG~~~~~~~~~di~~yD~~t~~W~~v~~ 234 (578)
...+. .|.. .+.... .+ +.++ .+.+.. .-..++.||+.+++.+.+..
T Consensus 411 ~~~l~----l~~~--~~~~~~~~~~~~~~~~~~l~~~~ss~~----~P~~~~~~d~~~~~~~~l~~ 466 (751)
T 2xe4_A 411 LREVV----MEEP--IFTVHLVESQMLEYEEPTFRMEYSSLA----TPNTWFDVSPQDHSRTAVKV 466 (751)
T ss_dssp CEECC----CCCS--SCEEEECGGGCCCTTCSCEEEEEEETT----EEEEEEEECTTTCCEEEEEE
T ss_pred ceEEC----CCCc--eeEEEeccCcccCCCCCEEEEEEeCCC----CCCEEEEEECCCCcEEEEec
Confidence 34442 1211 122111 12 2333 332221 23568899998888777654
No 271
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=46.74 E-value=2e+02 Score=31.96 Aligned_cols=98 Identities=10% Similarity=0.079 Sum_probs=53.6
Q ss_pred eceEEEEEcCcc--eE--EEeccCCCCCCCCCceeEE-EeCCEEEEEecCCCCCcccCceEEEECCC-CceEE-ecCCCC
Q 008089 165 YNDLYILNTETF--VW--KRATTSGNPPSARDSHTCS-SWKNKIIVIGGEDGHDYYLSDVHILDTDT-LTWKE-LNTSGM 237 (578)
Q Consensus 165 ~ndv~~yd~~t~--~W--~~~~~~g~~p~~R~~h~~~-~~~~~lyV~GG~~~~~~~~~di~~yD~~t-~~W~~-v~~~g~ 237 (578)
.+++|++|+.+. .+ +.+.... .. ..+... ..++.||+..-.+.. ....|+.+|..+ ..|+. +-..
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~--~~--~~~s~~~~~g~~l~~~t~~~~a--~~~~L~~~d~~~~~~~~~~li~~-- 365 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPRE--KG--VRYDVQMHGTSHLVILTNEGGA--VNHKLLIAPRGQPSDWSHVLVDH-- 365 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCC--TT--CCEEEEEETTTEEEEEECTTTC--TTCEEEEEETTSTTCCCCEEECC--
T ss_pred CceEEEEECCCCCCCceeEEeecCC--CC--ceEEEeeeeCCEEEEEeCCCCC--CCcEEEEEcCCCcccceeeEECC--
Confidence 468999999874 45 5553211 01 112222 237788888654311 234689999876 67876 5331
Q ss_pred CCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEEC
Q 008089 238 VLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDV 275 (578)
Q Consensus 238 ~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi 275 (578)
............++.|++..-... ...++++|+
T Consensus 366 -~~~~~l~~~~~~~~~lv~~~~~~g----~~~l~~~dl 398 (751)
T 2xe4_A 366 -SEDVFMESIAVRSNYLVVAGRRAG----LTRIWTMMA 398 (751)
T ss_dssp -CSSEEEEEEEECSSEEEEEEEETT----EEEEEEEEC
T ss_pred -CCCcEEEEEEEECCEEEEEEEeCC----EEEEEEEec
Confidence 111122233445677776654322 356889986
No 272
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=46.22 E-value=2.7e+02 Score=28.77 Aligned_cols=252 Identities=10% Similarity=0.036 Sum_probs=0.0
Q ss_pred CCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEE-----------cccCCCCCCC
Q 008089 42 GGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVF-----------GGTDGMNPLR 110 (578)
Q Consensus 42 ~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~-----------GG~~~~~~~~ 110 (578)
+++.+|+.-....... +.+.++|+.+++-..--..|..| +....--+.++|+. ++ +
T Consensus 83 ~~~~vyV~n~~~~~~~--~~VsVID~~t~~vv~~I~vG~~P----gia~SpDgk~lyVan~~~~~~~~G~~~-------~ 149 (426)
T 3c75_H 83 DARRVYIQDPAHFAAI--TQQFVIDGSTGRILGMTDGGFLP----HPVAAEDGSFFAQASTVFERIARGKRT-------D 149 (426)
T ss_dssp CTTEEEEEECTTTCSS--EEEEEEETTTTEEEEEEEECSSC----EEEECTTSSCEEEEEEEEEETTEEEEE-------E
T ss_pred CCCEEEEECCCcCCCC--CeEEEEECCCCEEEEEEECCCCC----ceEECCCCCEEEEEeccccccccCCCC-------C
Q ss_pred cEEEEECCCCeEEecccCCCCC--------CCCcccEEEEECCEEEEEc--cCCCCCCCCCceeeceEEEEEcCcceEEE
Q 008089 111 DLHILDTSSHTWISPSVRGEGP--------EAREGHSAALVGKRLFIFG--GCGKSSNTNDEVYYNDLYILNTETFVWKR 180 (578)
Q Consensus 111 ~v~~yD~~t~~W~~l~~~g~~P--------~~R~~hs~~~~~~~lyvfG--G~~~~~~~~~~~~~ndv~~yd~~t~~W~~ 180 (578)
.+.++|+.+.+-..-- .++ ..-.+....-.++++||.. . .+.+.++|+.+.+-..
T Consensus 150 ~VsviD~~t~~vv~~I---~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~------------~~~VsVID~~t~kvv~ 214 (426)
T 3c75_H 150 YVEVFDPVTFLPIADI---ELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSP------------APAVGVVDLEGKTFDR 214 (426)
T ss_dssp EEEEECTTTCCEEEEE---EETTCCCCCBSCCGGGSEECTTSSEEEEEECSS------------SCEEEEEETTTTEEEE
T ss_pred EEEEEECCCCcEEEEE---ECCCccccccCCCcceEEEcCCCCEEEEEecCC------------CCeEEEEECCCCeEEE
Q ss_pred eccCCCC----CCCCCceeEEEeCCEEEEEecCCCCCc-------------------------------ccCceEEEECC
Q 008089 181 ATTSGNP----PSARDSHTCSSWKNKIIVIGGEDGHDY-------------------------------YLSDVHILDTD 225 (578)
Q Consensus 181 ~~~~g~~----p~~R~~h~~~~~~~~lyV~GG~~~~~~-------------------------------~~~di~~yD~~ 225 (578)
--..+.. |.....+....-+++++++.-..+.-. ..+.+++.|..
T Consensus 215 ~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~ 294 (426)
T 3c75_H 215 MLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLT 294 (426)
T ss_dssp EEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEEC
T ss_pred EEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEecc
Q ss_pred CCceEEecCCCCC----------CCCCceeEEEEeCCEEEEE---cCccCCCCccCcEEEEECCCCcEEEEEeCCCCCCC
Q 008089 226 TLTWKELNTSGMV----------LSPRAGHSTVAFGKNLFVF---GGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSA 292 (578)
Q Consensus 226 t~~W~~v~~~g~~----------p~~R~~hs~v~~~~~iyV~---GG~~~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~ 292 (578)
+..-..+...... |..........-++++||. ++........++|+++|..+.+=..--..+.
T Consensus 295 ~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~---- 370 (426)
T 3c75_H 295 AEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH---- 370 (426)
T ss_dssp SSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE----
T ss_pred CCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC----
Q ss_pred ceeeeEeeeeccCCC-EEEEEccccCCCCccCcEEEEeccccc
Q 008089 293 RFSVAGDCLDPLKGG-VLVFIGGCNKSLEALDDMYYLYTGLVN 334 (578)
Q Consensus 293 r~~~~~~~~~~~~~~-~l~v~GG~~~~~~~~~d~~~l~~~~~~ 334 (578)
....+.....+. .+|+.-..+.. +..+|+...+
T Consensus 371 ---~P~gia~spDg~~~lyv~n~~s~~------VsVID~~t~k 404 (426)
T 3c75_H 371 ---EIDSINVSQDAEPLLYALSAGTQT------LHIYDAATGE 404 (426)
T ss_dssp ---EECEEEECCSSSCEEEEEETTTTE------EEEEETTTCC
T ss_pred ---CcCeEEEccCCCEEEEEEcCCCCe------EEEEECCCCC
No 273
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=45.71 E-value=2.9e+02 Score=29.02 Aligned_cols=172 Identities=12% Similarity=0.043 Sum_probs=79.6
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCC----eEEecc----cCCCCCCCCcccEEEEECCEEEEE--ccCCCCCCCCCce
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSH----TWISPS----VRGEGPEAREGHSAALVGKRLFIF--GGCGKSSNTNDEV 163 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~----~W~~l~----~~g~~P~~R~~hs~~~~~~~lyvf--GG~~~~~~~~~~~ 163 (578)
..++|+-|..+ +.++++|+.++ +-.+.- ........+-.+..|.-++ |||- |+. ...
T Consensus 95 r~~l~v~~l~s-----~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~-------~g~ 161 (462)
T 2ece_A 95 RRFLIVPGLRS-----SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNE-------EGE 161 (462)
T ss_dssp SCEEEEEBTTT-----CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEET-------TSC
T ss_pred CCEEEEccCCC-----CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCc-------CCC
Confidence 45677777643 57999999876 433311 0000011122233333445 7773 221 112
Q ss_pred eeceEEEEEcCcceEEEeccCCCCCCCCCceeEEE--eCCEEEEEe---------cCCCCC---cccCceEEEECCCCce
Q 008089 164 YYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS--WKNKIIVIG---------GEDGHD---YYLSDVHILDTDTLTW 229 (578)
Q Consensus 164 ~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~--~~~~lyV~G---------G~~~~~---~~~~di~~yD~~t~~W 229 (578)
....+.++|.++++-..--..+..+. -..+.+.. -.+.+|+-- |..... .+.+.|.+||+.+.+-
T Consensus 162 ~~g~v~vlD~~T~~v~~~~~~~~~~~-~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~ 240 (462)
T 2ece_A 162 GPGGILMLDHYSFEPLGKWEIDRGDQ-YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR 240 (462)
T ss_dssp SCCEEEEECTTTCCEEEECCSBCTTC-CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE
T ss_pred CCCeEEEEECCCCeEEEEEccCCCCc-cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE
Confidence 24779999999765433221111121 11111222 144455541 222221 3567899999987532
Q ss_pred EEecCCCCCCCCCc--e--eEEEEe---CCEEEEEcCccCCCCccCcEEEEECCCCcEEEEEe
Q 008089 230 KELNTSGMVLSPRA--G--HSTVAF---GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (578)
Q Consensus 230 ~~v~~~g~~p~~R~--~--hs~v~~---~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~~ 285 (578)
+.. .+.+.. . |-...+ +..+||..-.+ .....+.|++|..+.+.|..+..
T Consensus 241 --~~t---I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~-~~~Lss~V~v~~~d~g~~~~~~v 297 (462)
T 2ece_A 241 --IHS---LTLGEENRMALELRPLHDPTKLMGFINMVVS-LKDLSSSIWLWFYEDGKWNAEKV 297 (462)
T ss_dssp --EEE---EESCTTEEEEEEEEECSSTTCCEEEEEEEEE-TTTCCEEEEEEEEETTEEEEEEE
T ss_pred --eeE---EecCCCCCccceeEeeECCCCCEEEEEEeee-ccCCCceEEEEEecCCceeEEEE
Confidence 222 112111 1 111111 33466654311 11233557766666688887663
No 274
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=45.51 E-value=2.2e+02 Score=27.46 Aligned_cols=24 Identities=17% Similarity=0.118 Sum_probs=16.3
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeE
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W 122 (578)
++.+++.|+.++ .+.++|+.+.+.
T Consensus 87 ~~~~l~s~s~D~-----~v~lwd~~~~~~ 110 (343)
T 2xzm_R 87 ENCFAISSSWDK-----TLRLWDLRTGTT 110 (343)
T ss_dssp STTEEEEEETTS-----EEEEEETTSSCE
T ss_pred CCCEEEEEcCCC-----cEEEEECCCCcE
Confidence 455666776553 588889887654
No 275
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=44.20 E-value=3.6e+02 Score=29.73 Aligned_cols=232 Identities=16% Similarity=0.230 Sum_probs=114.8
Q ss_pred cEEEEEcCCCcEEEeeecCCCCCCC----cceeEEEE----CCEEEEEcccCC--CCC-CCcEEEEECCCCeEEecccCC
Q 008089 61 QVHVFDTVNQTWSQPVIKGSPPTPR----DSHSCTTV----GENLYVFGGTDG--MNP-LRDLHILDTSSHTWISPSVRG 129 (578)
Q Consensus 61 ~v~~yD~~t~~W~~l~~~g~~P~~R----~~hs~~~~----~~kIYv~GG~~~--~~~-~~~v~~yD~~t~~W~~l~~~g 129 (578)
.+|+.+-...+|+.+. ..+... .+....++ .+.||+..|... ... ...+++-.=.-.+|+++....
T Consensus 46 gv~rS~D~G~tW~~i~---~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~~l~~S~DgG~TW~~~~~~~ 122 (737)
T 2cn3_A 46 GAYRWDPSTETWIPLL---DHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNMGAILRSTDRGETWEKTILPF 122 (737)
T ss_dssp CEEEEETTTTEEEECC---TTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCCCEEEEESSSSSSCEEEECSS
T ss_pred cEEEeCCCCCCEEECc---CccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCCccEEEeCCCCCCcccCCCCc
Confidence 4899998899999864 222111 22233333 357888765311 111 123444433456798765321
Q ss_pred C----CCCCCcccEEEEE---CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCC------CC--CC---
Q 008089 130 E----GPEAREGHSAALV---GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP------PS--AR--- 191 (578)
Q Consensus 130 ~----~P~~R~~hs~~~~---~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~------p~--~R--- 191 (578)
. +|.....+.+++. .+.||+-... . ..+|+-.-...+|+++...... |. .+
T Consensus 123 ~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~-------g----~gl~~S~DgG~tW~~~~~~~~~~~~~~~p~~~~~~~~ 191 (737)
T 2cn3_A 123 KMGGNMPGRSMGERLAIDPNDNRILYLGTRC-------G----NGLWRSTDYGVTWSKVESFPNPGTYIYDPNFDYTKDI 191 (737)
T ss_dssp CCCTTSTTTTSCCCEEECSSCTTCEEEECST-------T----CCEEEESSTTSSCEECTTCCCCCCCBSCTTSTTTCSB
T ss_pred ccCCCcCcccccceEEECCCCCCEEEEeecc-------C----CcEEEeCCCCcceecccCCCCCcccccCcccccccCC
Confidence 1 1211123455543 2456663210 0 2355544446789988632111 00 00
Q ss_pred CceeEEEeC----------CEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCc
Q 008089 192 DSHTCSSWK----------NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGF 260 (578)
Q Consensus 192 ~~h~~~~~~----------~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyV~GG~ 260 (578)
.+.....++ +.||+--+... ..+++=.=...+|+.+.. .|.....|.++.. ++.+|+..+-
T Consensus 192 ~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~-----~~v~~S~DgG~tW~~~~~---~p~~~~~~~~~~~~~~~l~~~~~d 263 (737)
T 2cn3_A 192 IGVVWVVFDKSSSTPGNPTKTIYVGVADKN-----ESIYRSTDGGVTWKAVPG---QPKGLLPHHGVLASNGMLYITYGD 263 (737)
T ss_dssp CCEEEEEECGGGSCTTSCCSCEEEEESCSS-----CCEEEESSTTSCCEECTT---CCCSSEEEEEEECTTSEEEEEEES
T ss_pred CCEEEEEcCCCCcccCCCCCEEEEEecCCC-----ccEEEEcCCCCceEECCC---CCCcccceEEEECCCCeEEEEecC
Confidence 011112221 25665321111 113333224567999873 4544444544433 6788876542
Q ss_pred cCC---CCccCcEEEEECCCCcEEEEEeCCCC-CCCceeeeEeeeeccCCCEEEEEcc
Q 008089 261 TDS---QNLYDDLYMIDVDSGLWTKVITTGEG-PSARFSVAGDCLDPLKGGVLVFIGG 314 (578)
Q Consensus 261 ~~~---~~~~~dv~~ydi~t~~W~~l~~~~~~-P~~r~~~~~~~~~~~~~~~l~v~GG 314 (578)
... ......+|+++-...+|+.+...+.. +..++..+...+.+...+.||+.+.
T Consensus 264 ~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~~~~~~~~~~~~i~v~p~~~~~ly~~~~ 321 (737)
T 2cn3_A 264 TCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSSDNRFCFAGLAVDRQNPDIIMVTSM 321 (737)
T ss_dssp SCCSSCCSCCEEEEEEETTTCCEEECCSSCTTSTTCCSEEEEEEECTTCTTCEEEEEE
T ss_pred CCCccccccCceEEEEeCCCCCEEEccCCCCCCcccccccccEEEcCCCCCEEEEEec
Confidence 210 11234699999999999998764321 1234555545555555677887654
No 276
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=43.51 E-value=62 Score=35.28 Aligned_cols=63 Identities=8% Similarity=0.028 Sum_probs=32.1
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCC----CCCCcEEEEECCCCeE
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGM----NPLRDLHILDTSSHTW 122 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~----~~~~~v~~yD~~t~~W 122 (578)
..++++|..+++-..+.............-...-+++..+++..... .....++++|+.+.+.
T Consensus 36 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~ 102 (719)
T 1z68_A 36 NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF 102 (719)
T ss_dssp SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc
Confidence 36999999988876643110000000111112225555555432111 1125799999998876
No 277
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=42.16 E-value=3e+02 Score=28.09 Aligned_cols=73 Identities=19% Similarity=0.057 Sum_probs=43.0
Q ss_pred eCCEEEEEec---CCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEE-eCC--EEEEEcCccCCCCccCcEEE
Q 008089 199 WKNKIIVIGG---EDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGK--NLFVFGGFTDSQNLYDDLYM 272 (578)
Q Consensus 199 ~~~~lyV~GG---~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~-~~~--~iyV~GG~~~~~~~~~dv~~ 272 (578)
-++++||.-+ .......-+.++++|+++.+-..-- +.+..-+++.+ -++ .+|+.-+. .++|.+
T Consensus 290 ~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i-----~vg~~~~~lavs~D~~~~ly~tn~~------~~~VsV 358 (386)
T 3sjl_D 290 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF-----EMGHEIDSINVSQDEKPLLYALSTG------DKTLYI 358 (386)
T ss_dssp TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE-----EEEEEECEEEECSSSSCEEEEEETT------TTEEEE
T ss_pred CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEE-----ECCCCcceEEECCCCCeEEEEEcCC------CCeEEE
Confidence 3689999632 2222224578999999987754432 22222334433 343 36664432 356999
Q ss_pred EECCCCcEEE
Q 008089 273 IDVDSGLWTK 282 (578)
Q Consensus 273 ydi~t~~W~~ 282 (578)
||..+++-..
T Consensus 359 iD~~t~k~~~ 368 (386)
T 3sjl_D 359 HDAESGEELR 368 (386)
T ss_dssp EETTTCCEEE
T ss_pred EECCCCcEEE
Confidence 9999987544
No 278
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=39.87 E-value=3.1e+02 Score=27.67 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=13.7
Q ss_pred cceEEEEEcCCCEEEEEcC
Q 008089 33 WGHTCNAIKGGRFLYVFGG 51 (578)
Q Consensus 33 ~ghs~v~v~~g~~Iyv~GG 51 (578)
..|++++..++ .||.+|-
T Consensus 182 ~~hs~alt~~G-~v~~wG~ 199 (406)
T 4d9s_A 182 AEHTAAVTEDG-DLYGWGW 199 (406)
T ss_dssp SSEEEEEETTS-CEEEEEC
T ss_pred CCeEEEEeCCC-CEEEeeC
Confidence 46888877766 4999984
No 279
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=39.73 E-value=2.3e+02 Score=26.14 Aligned_cols=152 Identities=9% Similarity=-0.023 Sum_probs=81.6
Q ss_pred CCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEEECCC
Q 008089 42 GGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSS 119 (578)
Q Consensus 42 ~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~yD~~t 119 (578)
.++.||+.-.. .+.++++++....-..+. ..... .-..++.. +++||+..... ..+.++++++..
T Consensus 89 ~~~~lyv~d~~------~~~I~~~~~~g~~~~~~~-~~~~~---~P~~i~vd~~~g~lyv~~~~~---~~~~I~~~~~dg 155 (267)
T 1npe_A 89 LGRTIFWTDSQ------LDRIEVAKMDGTQRRVLF-DTGLV---NPRGIVTDPVRGNLYWTDWNR---DNPKIETSHMDG 155 (267)
T ss_dssp TTTEEEEEETT------TTEEEEEETTSCSCEEEE-CSSCS---SEEEEEEETTTTEEEEEECCS---SSCEEEEEETTS
T ss_pred cCCeEEEEECC------CCEEEEEEcCCCCEEEEE-ECCCC---CccEEEEeeCCCEEEEEECCC---CCcEEEEEecCC
Confidence 45678876432 246888888654333322 11111 11233333 67899875321 135788998765
Q ss_pred CeEEecccCCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEE
Q 008089 120 HTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCS 197 (578)
Q Consensus 120 ~~W~~l~~~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~ 197 (578)
..-..+.. ... ..-.++++. +++||+.-.. .+.++++|+....-..+..... .-..++
T Consensus 156 ~~~~~~~~-~~~---~~P~gia~d~~~~~lyv~d~~-----------~~~I~~~~~~g~~~~~~~~~~~-----~P~gi~ 215 (267)
T 1npe_A 156 TNRRILAQ-DNL---GLPNGLTFDAFSSQLCWVDAG-----------THRAECLNPAQPGRRKVLEGLQ-----YPFAVT 215 (267)
T ss_dssp CCCEEEEC-TTC---SCEEEEEEETTTTEEEEEETT-----------TTEEEEEETTEEEEEEEEECCC-----SEEEEE
T ss_pred CCcEEEEE-CCC---CCCcEEEEcCCCCEEEEEECC-----------CCEEEEEecCCCceEEEecCCC-----CceEEE
Confidence 43222210 111 123344554 4689987541 3578899987654333322111 123555
Q ss_pred EeCCEEEEEecCCCCCcccCceEEEECCCCceEEe
Q 008089 198 SWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL 232 (578)
Q Consensus 198 ~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v 232 (578)
..++.||+.... .+.+.++|+.+.+....
T Consensus 216 ~d~~~lyva~~~------~~~v~~~d~~~g~~~~~ 244 (267)
T 1npe_A 216 SYGKNLYYTDWK------TNSVIAMDLAISKEMDT 244 (267)
T ss_dssp EETTEEEEEETT------TTEEEEEETTTTEEEEE
T ss_pred EeCCEEEEEECC------CCeEEEEeCCCCCceEE
Confidence 668899996432 24589999987765443
No 280
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=38.89 E-value=2.9e+02 Score=27.11 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=51.0
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCC----CCCCcEEEEECCCCeE-EecccCCCCC
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGM----NPLRDLHILDTSSHTW-ISPSVRGEGP 132 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~----~~~~~v~~yD~~t~~W-~~l~~~g~~P 132 (578)
+.+++||..+.+-... ++..... .++.. +.++|+..-.... ...+.+.+||+.+.+- ..++..+...
T Consensus 31 ~~v~v~D~~t~~~~~~-----i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 31 SRVHVYDYTNGKFLGM-----VPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp CEEEEEETTTCCEEEE-----EECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred CeEEEEECCCCeEEEE-----ecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 4699999988765431 1222222 22222 4578887521110 1124689999987653 2333211000
Q ss_pred -CCCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceE
Q 008089 133 -EAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW 178 (578)
Q Consensus 133 -~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W 178 (578)
....-+.+++. ++.||+.... ..+.+.++|+.+.+-
T Consensus 105 ~~g~~p~~i~~spdg~~l~v~n~~----------~~~~v~v~d~~~~~~ 143 (361)
T 2oiz_A 105 QGLNYDGLFRQTTDGKFIVLQNAS----------PATSIGIVDVAKGDY 143 (361)
T ss_dssp CBCCCGGGEEECTTSSEEEEEEES----------SSEEEEEEETTTTEE
T ss_pred ccCCCcceEEECCCCCEEEEECCC----------CCCeEEEEECCCCcE
Confidence 01122233332 4567775320 125678888887654
No 281
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=38.61 E-value=76 Score=29.95 Aligned_cols=61 Identities=16% Similarity=0.296 Sum_probs=37.1
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEe-----cccCCCCCCC------CcccEEEE--ECCEEEEEccCCCCCCCC
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWIS-----PSVRGEGPEA------REGHSAAL--VGKRLFIFGGCGKSSNTN 160 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~-----l~~~g~~P~~------R~~hs~~~--~~~~lyvfGG~~~~~~~~ 160 (578)
++++|+|-| +..|+||..+++-.. +. . ..|.. ..-.++.. .++++|+|-|
T Consensus 129 ~~k~yfFkG-------~~yw~~d~~~~~~~~gyPk~i~-~-g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg-------- 191 (227)
T 3lp9_A 129 GKEVYLFKG-------DQYARIDYGSNSMVNKEIKSIS-S-GYPCFRNTIFESGADAAFASHKTNEVYFFKD-------- 191 (227)
T ss_dssp TTEEEEEET-------TEEEEEETTTTEESSSSCEEHH-H-HCGGGTTSGGGGCCSEEEECSSTTEEEEEET--------
T ss_pred CCEEEEEEC-------CEEEEEeCCCccccCCCCeEHH-H-CCCCccccccCCCccEEEEcCCCceEEEEEC--------
Confidence 689999987 469999987654321 11 0 12211 12223333 2479999988
Q ss_pred CceeeceEEEEEcCcc
Q 008089 161 DEVYYNDLYILNTETF 176 (578)
Q Consensus 161 ~~~~~ndv~~yd~~t~ 176 (578)
+..|+||..+.
T Consensus 192 -----~~Ywr~d~~~~ 202 (227)
T 3lp9_A 192 -----DHYARVKVTPX 202 (227)
T ss_dssp -----TEEEEEECCSS
T ss_pred -----CEEEEEECCcc
Confidence 45688887665
No 282
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=38.41 E-value=3.8e+02 Score=28.33 Aligned_cols=158 Identities=13% Similarity=0.085 Sum_probs=76.2
Q ss_pred EEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcce----eEEEE--CCEEEEEcccCCCCCCCc
Q 008089 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSH----SCTTV--GENLYVFGGTDGMNPLRD 111 (578)
Q Consensus 38 v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h----s~~~~--~~kIYv~GG~~~~~~~~~ 111 (578)
+.+..+..+++.||.+ ..+.++|..+++....-..... ...+| .++.. +++.++.||.+ ..
T Consensus 196 v~fspdg~~las~s~D------~~i~lwd~~~g~~~~~~~~~~~--~~~~h~~~V~~v~~spdg~~l~s~s~D-----~~ 262 (611)
T 1nr0_A 196 VRYNPDGSLFASTGGD------GTIVLYNGVDGTKTGVFEDDSL--KNVAHSGSVFGLTWSPDGTKIASASAD-----KT 262 (611)
T ss_dssp EEECTTSSEEEEEETT------SCEEEEETTTCCEEEECBCTTS--SSCSSSSCEEEEEECTTSSEEEEEETT-----SE
T ss_pred EEECCCCCEEEEEECC------CcEEEEECCCCcEeeeeccccc--cccccCCCEEEEEECCCCCEEEEEeCC-----Ce
Confidence 3333333355555543 3478888877654431101000 01122 12222 56677777765 35
Q ss_pred EEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCC
Q 008089 112 LHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSAR 191 (578)
Q Consensus 112 v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R 191 (578)
+.++|+.+.+....-..+. . .......+..++..++.++. ...+..+|+.+..-.... .+. .
T Consensus 263 v~lWd~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~s~s~-----------d~~i~~~~~~~~~~~~~~-~gh----~ 324 (611)
T 1nr0_A 263 IKIWNVATLKVEKTIPVGT-R-IEDQQLGIIWTKQALVSISA-----------NGFINFVNPELGSIDQVR-YGH----N 324 (611)
T ss_dssp EEEEETTTTEEEEEEECCS-S-GGGCEEEEEECSSCEEEEET-----------TCCEEEEETTTTEEEEEE-CCC----S
T ss_pred EEEEeCCCCceeeeecCCC-C-ccceeEEEEEcCCEEEEEeC-----------CCcEEEEeCCCCCcceEE-cCC----C
Confidence 8889998887654221111 1 11112223335555555552 134566777665532221 010 1
Q ss_pred CceeEEE--eCCEEEEEecCCCCCcccCceEEEECCCCceEEe
Q 008089 192 DSHTCSS--WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL 232 (578)
Q Consensus 192 ~~h~~~~--~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v 232 (578)
..-.++. .+++.++.|+.++ .+.+||+.+......
T Consensus 325 ~~v~~l~~spdg~~l~s~s~D~------~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 325 KAITALSSSADGKTLFSADAEG------HINSWDISTGISNRV 361 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEC
T ss_pred CCEEEEEEeCCCCEEEEEeCCC------cEEEEECCCCceeee
Confidence 1112222 2667777777653 378899888765543
No 283
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=37.66 E-value=4.6e+02 Score=29.02 Aligned_cols=104 Identities=17% Similarity=0.178 Sum_probs=61.3
Q ss_pred eceEEEEEcCc--ceEEEeccCCCCCCCCCceeEEEeCCEEEEEecCCC----CCcccCceEEEECCC--------CceE
Q 008089 165 YNDLYILNTET--FVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDG----HDYYLSDVHILDTDT--------LTWK 230 (578)
Q Consensus 165 ~ndv~~yd~~t--~~W~~~~~~g~~p~~R~~h~~~~~~~~lyV~GG~~~----~~~~~~di~~yD~~t--------~~W~ 230 (578)
.+.+|..+... ..|.++. .| +...-....++++|+....+- .......|...|+.+ ..|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 341 (711)
T 4hvt_A 268 NYDNYILDTKYKNLKLQKIN----MP--SDATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLK 341 (711)
T ss_dssp CEEEEEEECSSSSCEEEECC----SC--TTCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCE
T ss_pred ceeEEEEcCCCCCCcceEee----cC--CcceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccce
Confidence 47788888663 6787773 22 222223456899999764331 112345688888754 4698
Q ss_pred EecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCCCcEE
Q 008089 231 ELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (578)
Q Consensus 231 ~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~ 281 (578)
.+-. +-..+.-......++.+++..-.. -...++++|+.++.|.
T Consensus 342 ~~~~---~~~~~~l~~~~~~~~~l~~~~~~~----~~~~l~~~~~~~g~~~ 385 (711)
T 4hvt_A 342 ILFT---PTANEVFNFISTTKDRVFLATYDN----VVAKVVTFTLENEQWT 385 (711)
T ss_dssp EEEC---CCTTEEEEEEEECSSCEEEEEEET----TEEEEEEECEETTEEC
T ss_pred EEEC---CCCCCeEEEEEEECCEEEEEEEEC----CEEEEEEEECCCCceE
Confidence 7543 222333344555677776654321 1345889998888874
No 284
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=36.58 E-value=5e+02 Score=29.13 Aligned_cols=181 Identities=9% Similarity=0.077 Sum_probs=94.8
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEEECCCC----eEEecccCCCCCC
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSH----TWISPSVRGEGPE 133 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~yD~~t~----~W~~l~~~g~~P~ 133 (578)
..+..+++....+..+.. ..+.-.++++. +++||+.-.. .+.|+++++... ....+. ...+..
T Consensus 404 ~~Ir~i~l~~~~~~~l~~-----~~~~~~gl~~d~~~~~lY~sD~~-----~~~I~~~~l~g~~~~~~~~~vi-~~~l~~ 472 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIP-----NLRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVI-SRDIQA 472 (791)
T ss_dssp SSEEEECTTSCCCEEEEC-----SCSSEEEEEEETTTTEEEEEETT-----TTEEEEEEC--------CEEEE-CSSCSC
T ss_pred cceeEeeccCCcceeeec-----CCCceEEEeecccCCeeEEeecc-----ceeEEEEeccCCCCCcceeEEE-ecCCCC
Confidence 346677777666665431 11222333333 6789988542 246888887642 222221 111111
Q ss_pred CCcccEEEE--ECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEe--CCEEEEEecC
Q 008089 134 AREGHSAAL--VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGE 209 (578)
Q Consensus 134 ~R~~hs~~~--~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~--~~~lyV~GG~ 209 (578)
-.++++ ++++||+.-.. ...|+++++....-+.+... ....| ..+++. ++.||+.--.
T Consensus 473 ---P~GLAvD~~~~~LY~tD~~-----------~~~I~v~~ldG~~~~~l~~~-~l~~P---~gIaVDp~~g~LYwtD~g 534 (791)
T 3m0c_C 473 ---PDGLAVDWIHSNIYWTDSV-----------LGTVSVADTKGVKRKTLFRE-NGSKP---RAIVVDPVHGFMYWTDWG 534 (791)
T ss_dssp ---CCEEEEETTTTEEEEEETT-----------TTEEEEEETTSSSEEEEEEC-TTCCE---EEEEEETTTTEEEEEECS
T ss_pred ---cceeeeeecCCcEEEEecC-----------CCeEEEEeCCCCeEEEEEeC-CCCCc---ceEEEecCCCCEEEecCC
Confidence 123444 36799997541 35688899887665555321 11111 234443 5889987521
Q ss_pred CCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEE--eCCEEEEEcCccCCCCccCcEEEEECCCCcEEEEE
Q 008089 210 DGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA--FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (578)
Q Consensus 210 ~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~--~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~ 284 (578)
. ...|+++++....-+.+...+ +..| ..+++ .+++||+.-.. .+.|+++++....-..+.
T Consensus 535 ~-----~~~I~~~~~dG~~~~~lv~~~-l~~P---~GLavD~~~~~LYwaD~~------~~~I~~~d~dG~~~~~v~ 596 (791)
T 3m0c_C 535 T-----PAKIKKGGLNGVDIYSLVTEN-IQWP---NGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTIL 596 (791)
T ss_dssp S-----SCEEEEEETTSCCEEEEECSS-CSCE---EEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEE
T ss_pred C-----CCeEEEEecCCCceEEEEeCC-CCCc---eEEEEecCCCeEEEEeCC------CCcEEEEecCCCceEEEe
Confidence 1 145889998766554443311 1111 12332 36789998432 356999999866544443
No 285
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=36.35 E-value=2.3e+02 Score=31.29 Aligned_cols=179 Identities=9% Similarity=0.082 Sum_probs=87.2
Q ss_pred cEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEEECCCC----eEEecccCCCCCCC
Q 008089 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSH----TWISPSVRGEGPEA 134 (578)
Q Consensus 61 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~yD~~t~----~W~~l~~~g~~P~~ 134 (578)
.+.++++.+.....+. +....-++++.. +++||+.--. ...|+++++.+. .-..+. ...+..
T Consensus 387 ~I~~id~~~~~~~~~~-----~~~~~p~gla~d~~~~~Ly~sD~~-----~~~I~~~~~~g~~~~~~~~~~i-~~~~~~- 454 (699)
T 1n7d_A 387 EVRKMTLDRSEYTSLI-----PNLRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVI-SRDIQA- 454 (699)
T ss_dssp C-CEECTTSCCEECCS-----CCCTTCCCCEEETTTTEEEECCTT-----TTSBEEEESCCCCC-CCCCCBC-CSCC---
T ss_pred ceEEEeCCCCcceeee-----ccCcceEEEccccccCeEEEEecC-----CCeEEEEecCCCCCCcceEEEE-eCCCCC-
Confidence 5677777776665532 122223344443 5788887432 246889988751 111110 001111
Q ss_pred CcccEEEE--ECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEE--eCCEEEEEecCC
Q 008089 135 REGHSAAL--VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS--WKNKIIVIGGED 210 (578)
Q Consensus 135 R~~hs~~~--~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~--~~~~lyV~GG~~ 210 (578)
-.++++ .+++||+.-.. .+.|+++++....-..+... ....+ ..+++ .++.||+..-..
T Consensus 455 --P~glavD~~~g~LY~tD~~-----------~~~I~v~d~dg~~~~~l~~~-~~~~P---~giavDp~~g~ly~td~~~ 517 (699)
T 1n7d_A 455 --PDGLAVDWIHSNIYWTDSV-----------LGTVSVADTKGVKRKTLFRE-QGSKP---RAIVVDPVHGFMYWTDWGT 517 (699)
T ss_dssp --CCCEECCCSSSBCEECCTT-----------TSCEEEEBSSSCCEEEECCC-SSCCC---CCEECCSSSSCCEECCCSS
T ss_pred --cceEEEEeeCCcEEEEecc-----------CCeEEEEecCCCceEEEEeC-CCCCc---ceEEEccCCCcEEEcccCC
Confidence 122333 35788885331 24578888877655444321 11112 22333 257788754111
Q ss_pred CCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEE--eCCEEEEEcCccCCCCccCcEEEEECCCCcEEEE
Q 008089 211 GHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA--FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (578)
Q Consensus 211 ~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~--~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l 283 (578)
...|+++++....-+.+... .+..|+ .+++ .++.||+.-.. .+.|+++|+....-+.+
T Consensus 518 -----~~~I~~~~~dG~~~~~l~~~-~l~~Pn---Glavd~~~~~LY~aD~~------~~~I~~~d~dG~~~~~~ 577 (699)
T 1n7d_A 518 -----PAKIKKGGLNGVDIYSLVTE-NIQWPN---GITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTI 577 (699)
T ss_dssp -----SCCEEBCCSSSCCCCEESCS-SCSSCC---CEEECTTTCCEEEEETT------TTEEEEECSSSSCCEEE
T ss_pred -----CCeEEEEeCCCCCeeEEEeC-CCCCcc---EEEEeccCCEEEEEecC------CCeEEEEccCCCceEEE
Confidence 24577777765433333221 111111 2333 24678887543 35689999876544444
No 286
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=35.58 E-value=5.3e+02 Score=29.14 Aligned_cols=200 Identities=11% Similarity=-0.013 Sum_probs=92.7
Q ss_pred EEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCEEEEEcccCCCCCCCcEEEE
Q 008089 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHIL 115 (578)
Q Consensus 36 s~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~~~~~~~~v~~y 115 (578)
.++++..+..+++.|+.+ ..+.+||..+..-... .+....-.+++...+++++.|+.+ ..+.++
T Consensus 21 ~~lafspdg~~lAsgs~D------g~I~lw~~~~~~~~~~-----~~~~~~V~~l~fspg~~L~S~s~D-----~~v~lW 84 (902)
T 2oaj_A 21 IAAAFDFTQNLLAIATVT------GEVHIYGQQQVEVVIK-----LEDRSAIKEMRFVKGIYLVVINAK-----DTVYVL 84 (902)
T ss_dssp EEEEEETTTTEEEEEETT------SEEEEECSTTCEEEEE-----CSSCCCEEEEEEETTTEEEEEETT-----CEEEEE
T ss_pred EEEEECCCCCEEEEEeCC------CEEEEEeCCCcEEEEE-----cCCCCCEEEEEEcCCCEEEEEECc-----CeEEEE
Confidence 344554444466777754 3588888776543321 111111122222235555555543 358888
Q ss_pred ECCCCeEEecccCCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCC-----CCC
Q 008089 116 DTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG-----NPP 188 (578)
Q Consensus 116 D~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g-----~~p 188 (578)
|+.+.+....- . .+ ....++.. ++..++.|+. ...+.+||+.+..-....... ..+
T Consensus 85 d~~~~~~~~~~-~--~~---~~V~~v~~sp~g~~l~sgs~-----------dg~V~lwd~~~~~~~~~~i~~~~~~~~~~ 147 (902)
T 2oaj_A 85 SLYSQKVLTTV-F--VP---GKITSIDTDASLDWMLIGLQ-----------NGSMIVYDIDRDQLSSFKLDNLQKSSFFP 147 (902)
T ss_dssp ETTTCSEEEEE-E--CS---SCEEEEECCTTCSEEEEEET-----------TSCEEEEETTTTEEEEEEECCHHHHHTCS
T ss_pred ECCCCcEEEEE-c--CC---CCEEEEEECCCCCEEEEEcC-----------CCcEEEEECCCCccccceecccccccccc
Confidence 98876543211 0 01 11122222 3455555652 245778888876543211000 000
Q ss_pred CCC--CceeEEEeC--CEEEEEecCCCCCcccCceEEEECCCCceEEecCCCC----CCC---------CC-c-eeEEEE
Q 008089 189 SAR--DSHTCSSWK--NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGM----VLS---------PR-A-GHSTVA 249 (578)
Q Consensus 189 ~~R--~~h~~~~~~--~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~----~p~---------~R-~-~hs~v~ 249 (578)
... .-.+++... ..+++.|+.+ ..+ +||+.+..-...-. +. .+. .+ . -.+++.
T Consensus 148 ~~h~~~V~sl~~sp~~~~~l~~g~~d------g~v-lWd~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~h~~~V~~v~f 219 (902)
T 2oaj_A 148 AARLSPIVSIQWNPRDIGTVLISYEY------VTL-TYSLVENEIKQSFI-YELPPFAPGGDFSEKTNEKRTPKVIQSLY 219 (902)
T ss_dssp SSCCCCCCEEEEETTEEEEEEEECSS------CEE-EEETTTTEEEEEEC-CCBCTTCCCSTTCCCTTSCBCCCEEEEEE
T ss_pred ccCCCCeEEEEEccCCCCEEEEEeCC------CcE-EEECCCCceEEEEe-cccCCcCCCcccccccccccCCCeEEEEE
Confidence 000 111222222 3566666543 237 88988765433221 11 000 00 1 112222
Q ss_pred e-CCEEEEEcCccCCCCccCcEEEEECCCCcEEE
Q 008089 250 F-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (578)
Q Consensus 250 ~-~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~ 282 (578)
. ++.+++.|+.+. .|.+||+.++.-..
T Consensus 220 spdg~~lasgs~Dg------~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 220 HPNSLHIITIHEDN------SLVFWDANSGHMIM 247 (902)
T ss_dssp CTTSSEEEEEETTC------CEEEEETTTCCEEE
T ss_pred cCCCCEEEEEECCC------eEEEEECCCCcEEE
Confidence 2 456777777543 48999998876544
No 287
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=35.38 E-value=1.3e+02 Score=32.71 Aligned_cols=108 Identities=6% Similarity=-0.045 Sum_probs=53.8
Q ss_pred CcEEEEECCCCeEEecccCCCCCCCCcccEEEE-ECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceE---EEeccCC
Q 008089 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW---KRATTSG 185 (578)
Q Consensus 110 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W---~~~~~~g 185 (578)
..++++|+.+.+-..+....... ...-.+.+. -+++.++++..... .-.......++++|+.+.+. ..+.
T Consensus 36 ~~i~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~SpDg~~la~~~~~~~--~~~~s~~~~i~~~d~~~g~~~~~~~l~--- 109 (719)
T 1z68_A 36 NNIVLYNIETGQSYTILSNRTMK-SVNASNYGLSPDRQFVYLESDYSK--LWRYSYTATYYIYDLSNGEFVRGNELP--- 109 (719)
T ss_dssp SCEEEEESSSCCEEEEECHHHHH-TTTCSEEEECTTSSEEEEEEEEEE--CSSSCEEEEEEEEETTTTEECCSSCCC---
T ss_pred CCEEEEEcCCCcEEEEEcccccc-ccceeeEEECCCCCeEEEEecCce--eEEeecceEEEEEECCCCccccceecC---
Confidence 36999999988765543110000 000122222 24555555541100 00011246799999998876 3331
Q ss_pred CCCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecC
Q 008089 186 NPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT 234 (578)
Q Consensus 186 ~~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~ 234 (578)
.........-+++.++++. -++|+++|..+..-..+..
T Consensus 110 ----~~~~~~~~SPDG~~la~~~-------~~~i~~~~~~~g~~~~l~~ 147 (719)
T 1z68_A 110 ----RPIQYLCWSPVGSKLAYVY-------QNNIYLKQRPGDPPFQITF 147 (719)
T ss_dssp ----SSBCCEEECSSTTCEEEEE-------TTEEEEESSTTSCCEECCC
T ss_pred ----cccccceECCCCCEEEEEE-------CCeEEEEeCCCCCcEEEec
Confidence 1122233333565555542 1368888888776666543
No 288
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=35.20 E-value=4.7e+02 Score=28.44 Aligned_cols=66 Identities=14% Similarity=0.055 Sum_probs=34.4
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCC-Ccce--eEEEECCEEEEEcccCC----CCCCCcEEEEECCCCeEEecc
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTP-RDSH--SCTTVGENLYVFGGTDG----MNPLRDLHILDTSSHTWISPS 126 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~-R~~h--s~~~~~~kIYv~GG~~~----~~~~~~v~~yD~~t~~W~~l~ 126 (578)
..+++||+.+++=..+- .+..... .... -...-+++..+++..+. .+...++|+||+.+.+..++.
T Consensus 36 ~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~ 108 (740)
T 4a5s_A 36 NNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEE 108 (740)
T ss_dssp TEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS
T ss_pred CcEEEEECCCCceEEEE-echhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcc
Confidence 36899999988755442 2221111 1111 11122555444443221 122367899999999876543
No 289
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=34.58 E-value=3.7e+02 Score=27.03 Aligned_cols=181 Identities=9% Similarity=0.055 Sum_probs=94.3
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEEECCCCe----EEecccCCCCCC
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHT----WISPSVRGEGPE 133 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~yD~~t~~----W~~l~~~g~~P~ 133 (578)
+.+.++|+....+..+. +..+.-.+++.. +++||+.--. ...++++++.... ...+. ...+
T Consensus 92 ~~I~~i~l~~~~~~~~~-----~~~~~~~~l~~d~~~~~lywsD~~-----~~~I~~~~~~g~~~~~~~~~~~-~~~~-- 158 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLI-----PNLRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVI-SRDI-- 158 (400)
T ss_dssp TEEEEECTTSCSCEEEE-----CSCSCEEEEEEETTTTEEEEEETT-----TTEEEEEEC------CCCEEEE-CSSC--
T ss_pred ceeEEEccCCcceeEec-----cccCcceEEeeeeccCceEEEecC-----CCeEEEEEcccCCCCCcceEEE-eCCC--
Confidence 45777777776666543 122233344443 6789988432 2468888886521 22211 0011
Q ss_pred CCcccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEEe--CCEEEEEecC
Q 008089 134 AREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGE 209 (578)
Q Consensus 134 ~R~~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~~--~~~lyV~GG~ 209 (578)
..-.++++. +++||+.-.. ...+++++++...-..+... ....| ..+++. ++.||+.--.
T Consensus 159 -~~p~glavD~~~~~lY~~d~~-----------~~~I~~~~~~g~~~~~l~~~-~~~~P---~~iavdp~~g~ly~td~~ 222 (400)
T 3p5b_L 159 -QAPDGLAVDWIHSNIYWTDSV-----------LGTVSVADTKGVKRKTLFRE-NGSKP---RAIVVDPVHGFMYWTDWG 222 (400)
T ss_dssp -SCEEEEEEETTTTEEEEEETT-----------TTEEEEECTTTCSEEEEEEC-SSCCE---EEEEEETTTTEEEEEECS
T ss_pred -CCcccEEEEecCCceEEEECC-----------CCeEEEEeCCCCceEEEEeC-CCCCc---ceEEEecccCeEEEEeCC
Confidence 112234443 6899998541 24678888887665544321 11111 234443 6889987521
Q ss_pred CCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe--CCEEEEEcCccCCCCccCcEEEEECCCCcEEEEE
Q 008089 210 DGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (578)
Q Consensus 210 ~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~--~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~ 284 (578)
. ...|+++++....-+.+...+ .. .-..+++- ++.||+.-.. .+.|+++|+....-+.+.
T Consensus 223 ~-----~~~I~~~~~dG~~~~~~~~~~-l~---~P~glavd~~~~~lY~aD~~------~~~I~~~d~dG~~~~~~~ 284 (400)
T 3p5b_L 223 T-----PAKIKKGGLNGVDIYSLVTEN-IQ---WPNGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTIL 284 (400)
T ss_dssp S-----SCCEEEEETTSCSCEEEECSS-CS---CEEEEEEETTTTEEEEEETT------TTEEEEEETTSCCCEEEE
T ss_pred C-----CCEEEEEeCCCCccEEEEECC-CC---ceEEEEEEeCCCEEEEEECC------CCEEEEEeCCCCccEEEE
Confidence 1 135889998765444332211 11 11223332 5789998432 356999998865444443
No 290
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=33.09 E-value=3.8e+02 Score=26.76 Aligned_cols=229 Identities=11% Similarity=0.096 Sum_probs=107.1
Q ss_pred ccEEEEEcCCCcEEEeeecCCC--CCCCcc-eeEEE----ECCEEEEEccc------CCC--CCCCcEEEEECC---CC-
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSP--PTPRDS-HSCTT----VGENLYVFGGT------DGM--NPLRDLHILDTS---SH- 120 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~--P~~R~~-hs~~~----~~~kIYv~GG~------~~~--~~~~~v~~yD~~---t~- 120 (578)
..++++|+..+.-..+...+-. -.+... .+... -+++|+++--. .+. ...+.+.+||+. +.
T Consensus 35 g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~ 114 (334)
T 2p9w_A 35 GRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSK 114 (334)
T ss_dssp TEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCC
T ss_pred CEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCC
Confidence 4688899886654443211100 111212 34444 25688886210 011 124679999988 43
Q ss_pred -eEEe-cccCCCC----CCCCc-ccEEEEE--CCEEEEEccCCCCCCCCCceeeceEEEEEcCcce---EEEeccCCCCC
Q 008089 121 -TWIS-PSVRGEG----PEARE-GHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV---WKRATTSGNPP 188 (578)
Q Consensus 121 -~W~~-l~~~g~~----P~~R~-~hs~~~~--~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~---W~~~~~~g~~p 188 (578)
.|.. +...... ...++ +..-..+ .+++||.+... ...|++++++... |..-. ...
T Consensus 115 ~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~----------~~~I~rV~pdG~~~~~~~~~~---~~~ 181 (334)
T 2p9w_A 115 PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG----------MPAIARVSADGKTVSTFAWES---GNG 181 (334)
T ss_dssp CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES----------SCEEEEECTTSCCEEEEEECC---CCS
T ss_pred EEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCC----------CCeEEEEeCCCCEEeeeeecC---CCc
Confidence 4642 1100000 00022 1222233 47899965521 1558999987542 53222 122
Q ss_pred CCCCce-eEEEe--CCEEEEEecCCCCCcccCceEEEECCCCceEEecCC--CCCCC-CC-ceeEEEEeCCEEEEEcCcc
Q 008089 189 SARDSH-TCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS--GMVLS-PR-AGHSTVAFGKNLFVFGGFT 261 (578)
Q Consensus 189 ~~R~~h-~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~--g~~p~-~R-~~hs~v~~~~~iyV~GG~~ 261 (578)
..+.+. .+++. ++.|++..+ . ..++.||+.+.....+... |.... .- -+-.....+++++++.-..
T Consensus 182 ~~~~G~nGIv~~pdg~~Liv~~~-~------g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~ 254 (334)
T 2p9w_A 182 GQRPGYSGITFDPHSNKLIAFGG-P------RALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARA 254 (334)
T ss_dssp SSCCSCSEEEEETTTTEEEEESS-S------SSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEET
T ss_pred ccccCcceEEEeCCCCEEEEEcC-C------CeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCC
Confidence 334444 34444 456777654 2 3489999875433122221 21101 11 1112334688875555321
Q ss_pred CCCCccCcEEEEECCCCcEEEEEeCCCCCCC--ceeeeEeee-eccCCCEEEEEccc
Q 008089 262 DSQNLYDDLYMIDVDSGLWTKVITTGEGPSA--RFSVAGDCL-DPLKGGVLVFIGGC 315 (578)
Q Consensus 262 ~~~~~~~dv~~ydi~t~~W~~l~~~~~~P~~--r~~~~~~~~-~~~~~~~l~v~GG~ 315 (578)
+..+++--..+ |+.....+..|.. -.+.+.+.+ ....+++||+.-++
T Consensus 255 ------~~~~~l~S~Dg-W~sa~~~g~~~~~~~~~g~tt~t~~~~~~~~~iYvv~~~ 304 (334)
T 2p9w_A 255 ------PYAISFRSWDN-WKSANIKKTKRSELQNSGFTAVADYYQGSEQGLYAVSAF 304 (334)
T ss_dssp ------TEEEEEECSST-TSEEEEEEEECGGGGSSCEEEEEEEEETTEEEEEEEECC
T ss_pred ------CCEEEEECCCC-cceeEEeeeecCccccCceeEEEEeccccCCeEEEEeee
Confidence 23555555555 9887665543432 112222211 00256888887654
No 291
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=32.60 E-value=4.8e+02 Score=28.33 Aligned_cols=236 Identities=13% Similarity=0.092 Sum_probs=0.0
Q ss_pred CCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEEC----CEEEEEcccCC------------
Q 008089 42 GGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVG----ENLYVFGGTDG------------ 105 (578)
Q Consensus 42 ~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~----~kIYv~GG~~~------------ 105 (578)
+|+++||--. ..+.+.++|+.+.+-.++- .+|....-|+++... +.+|+-+-...
T Consensus 100 DG~~lfVnd~------~~~rVavIdl~t~~~~~ii---~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~ 170 (595)
T 1fwx_A 100 DGRFLFMNDK------ANTRVARVRCDVMKCDAIL---EIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 170 (595)
T ss_dssp EEEEEEEEET------TTTEEEEEETTTTEEEEEE---ECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred CCCEEEEEcC------CCCEEEEEECCCceEeeEE---eCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccc
Q ss_pred CCCCCcEEEEECCCCeE-EecccCCCC------CCCCcccEEEEEC--------------CEEEEE----------ccCC
Q 008089 106 MNPLRDLHILDTSSHTW-ISPSVRGEG------PEAREGHSAALVG--------------KRLFIF----------GGCG 154 (578)
Q Consensus 106 ~~~~~~v~~yD~~t~~W-~~l~~~g~~------P~~R~~hs~~~~~--------------~~lyvf----------GG~~ 154 (578)
.++.+.+-+.|..+.+- .++.+.+.+ |..++.+.++... +.+.|+ -|
T Consensus 171 ~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G-- 248 (595)
T 1fwx_A 171 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG-- 248 (595)
T ss_dssp GGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT--
T ss_pred cccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC--
Q ss_pred CCCCCCCceeeceEEEEEcCcceEEE-eccCCCCCCCCCceeEEEe--CCEEEEEecCCCCCcccCceEEEECCCCc---
Q 008089 155 KSSNTNDEVYYNDLYILNTETFVWKR-ATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLT--- 228 (578)
Q Consensus 155 ~~~~~~~~~~~ndv~~yd~~t~~W~~-~~~~g~~p~~R~~h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t~~--- 228 (578)
...+.+.+-++|..+.+... +. ..|.+..-|++..- +..+|+-+. ..+.+.+||.++.+
T Consensus 249 ------k~~~i~~V~VID~~~~~~~~~~~---~Ipvg~~PhGv~~sPDGk~v~V~~~------~s~~VsVid~~~~~~~~ 313 (595)
T 1fwx_A 249 ------DYQELNGVKVVDGRKEASSLFTR---YIPIANNPHGCNMAPDKKHLCVAGK------LSPTVTVLDVTRFDAVF 313 (595)
T ss_dssp ------CSEEETTEEEEECSGGGCCSSEE---EEEEESSCCCEEECTTSSEEEEECT------TSSBEEEEEGGGHHHHH
T ss_pred ------CeeEECcEEEEeCcccCCceeEE---EEecCCCceEEEEcCCCCEEEEeCC------CCCeEEEEECccccccc
Q ss_pred --------eEEecCCCCCCCCCceeEEEEeCCEEEEEcCccCCCCccCcEEEEECCC--------CcEEEEEeCCCCCCC
Q 008089 229 --------WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS--------GLWTKVITTGEGPSA 292 (578)
Q Consensus 229 --------W~~v~~~g~~p~~R~~hs~v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t--------~~W~~l~~~~~~P~~ 292 (578)
-..... ..-.+-.|.++.-++.+|+.-..++. +.+||+++ ..+..+........+
T Consensus 314 ~~~l~~~~~v~~~v---~vG~gP~h~aF~~dG~aY~t~~ldsq------V~kwdi~~a~~~~~g~~~~~vi~kidV~yqp 384 (595)
T 1fwx_A 314 YENADPRSAVVAEP---ELGLGPLHTAFDGRGNAYTSLFLDSQ------VVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP 384 (595)
T ss_dssp HSCCCGGGGEEECC---BCCSCEEEEEECTTSEEEEEETTTTE------EEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred ccccCcccceEEEc---CCCCCcceEEECCCCeEEEEEecCCc------EEEEEhhHhhhhhcccccceeEEEeeccccc
Q ss_pred ceeeeEeeeeccCCCEEEEE
Q 008089 293 RFSVAGDCLDPLKGGVLVFI 312 (578)
Q Consensus 293 r~~~~~~~~~~~~~~~l~v~ 312 (578)
...++++......+++.++.
T Consensus 385 Gh~~~~~g~t~~~DGk~l~~ 404 (595)
T 1fwx_A 385 GHLKTVMGETLDATNDWLVC 404 (595)
T ss_dssp EEEEETTTTSTTCCSSEEEE
T ss_pred ccceeccceEeCCCCCEEEE
No 292
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=32.32 E-value=4.2e+02 Score=26.94 Aligned_cols=84 Identities=14% Similarity=0.133 Sum_probs=46.1
Q ss_pred eEEEEEcCCCEEEEEcCCCCC---CCCcccEEEEEcCCCcEE-EeeecC-C-CCCCCcceeEEEE--CCEEEEEcccCCC
Q 008089 35 HTCNAIKGGRFLYVFGGYGKD---NCQTNQVHVFDTVNQTWS-QPVIKG-S-PPTPRDSHSCTTV--GENLYVFGGTDGM 106 (578)
Q Consensus 35 hs~v~v~~g~~Iyv~GG~~~~---~~~~~~v~~yD~~t~~W~-~l~~~g-~-~P~~R~~hs~~~~--~~kIYv~GG~~~~ 106 (578)
| .++..+++.+|+...+... ....+.+.+||+.+.+-. .+.+.+ . ......-+.++.- +.++|+....
T Consensus 82 ~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~--- 157 (386)
T 3sjl_D 82 N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS--- 157 (386)
T ss_dssp E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS---
T ss_pred c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC---
Confidence 5 5566777888887532110 012356999999988754 333211 0 0011122333332 4568887421
Q ss_pred CCCCcEEEEECCCCeEE
Q 008089 107 NPLRDLHILDTSSHTWI 123 (578)
Q Consensus 107 ~~~~~v~~yD~~t~~W~ 123 (578)
..+.+.++|+.+++-.
T Consensus 158 -~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 158 -PAPAVGVVDLEGKAFK 173 (386)
T ss_dssp -SSCEEEEEETTTTEEE
T ss_pred -CCCeEEEEECCCCcEE
Confidence 1357999999998753
No 293
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=31.93 E-value=2.2e+02 Score=26.58 Aligned_cols=103 Identities=20% Similarity=0.401 Sum_probs=52.9
Q ss_pred ECCEEEEEcccCCCCCCCcEEEEECCCCeE--EecccC-CCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEE
Q 008089 93 VGENLYVFGGTDGMNPLRDLHILDTSSHTW--ISPSVR-GEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLY 169 (578)
Q Consensus 93 ~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W--~~l~~~-g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~ 169 (578)
.++++|+|=|. .+|+++.....+ ..+... ..+|. ... ++...++++|+|=| +.+|
T Consensus 27 ~~g~~yfFkg~-------~~Wr~~~~~~~~~p~~Is~~wpgLP~-~ID-AA~~~~~~~yfFkG-------------~~yw 84 (219)
T 1hxn_A 27 NHGATYVFSGS-------HYWRLDTNRDGWHSWPIAHQWPQGPS-TVD-AAFSWEDKLYLIQD-------------TKVY 84 (219)
T ss_dssp TTSCEEEEETT-------EEEESSSSSCTTCCEEGGGTCTTSCS-SCS-EEEEETTEEEEEET-------------TEEE
T ss_pred CCCcEEEEeCC-------EEEEEcCCCCCCCceEhhhhccCCCC-Ccc-EEEEECCcEEEecC-------------CEEE
Confidence 47889999773 467766433221 111111 12343 222 33334899999988 4578
Q ss_pred EEEcCc-ceE-----EEecc-CCCCCCC---CCceeEEEe--CCEEEEEecCCCCCcccCceEEEECCC
Q 008089 170 ILNTET-FVW-----KRATT-SGNPPSA---RDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDT 226 (578)
Q Consensus 170 ~yd~~t-~~W-----~~~~~-~g~~p~~---R~~h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t 226 (578)
+|+..+ .+- +.+.. .| .|.. ..--++... ++++|+|-| +..|.||..+
T Consensus 85 ~~~~~~~~~~~~gyPk~i~~~~G-~p~~~~~~~IDAA~~~~~~gk~yfFkG--------~~ywr~d~~~ 144 (219)
T 1hxn_A 85 VFLTKGGYTLVNGYPKRLEKELG-SPPVISLEAVDAAFVCPGSSRLHIMAG--------RRLWWLDLKS 144 (219)
T ss_dssp EEECSSSCEECTTCCEEHHHHHC-CCSSCCCSCCCEEECCTTCCEEEEEET--------TEEEEEEGGG
T ss_pred EEeCCCCceecCCCCeehhhccC-CCCcccccccceeEEecCCCEEEEEeC--------CEEEEEeCCC
Confidence 887542 111 12211 11 2222 112233333 589999976 3478888654
No 294
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=30.34 E-value=4e+02 Score=26.12 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=19.2
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCceEEec
Q 008089 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELN 233 (578)
Q Consensus 200 ~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~ 233 (578)
++..++.|+.++ .+.+||..+..-..+.
T Consensus 353 ~~~~l~s~s~dg------~v~iwd~~~~~~~~~~ 380 (447)
T 3dw8_B 353 SDSVVMTGSYNN------FFRMFDRNTKRDITLE 380 (447)
T ss_dssp TSSEEEEECSTT------EEEEEETTTCCEEEEE
T ss_pred CCCEEEEeccCC------EEEEEEcCCCcceeee
Confidence 566667777543 4888999887765544
No 295
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=30.08 E-value=4e+02 Score=25.99 Aligned_cols=176 Identities=10% Similarity=0.005 Sum_probs=83.3
Q ss_pred cEEEEECCCCeEEecccCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCC
Q 008089 111 DLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 189 (578)
Q Consensus 111 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~ 189 (578)
.+.++|+.+.+..... .. .. .-.+++.. ++++++.|+ .+.+.+++..+......... ....
T Consensus 158 ~i~iwd~~~~~~~~~~-~~--~~--~V~~v~fspdg~~l~s~s------------~~~~~~~~~~~~~~~~~~~~-~~~~ 219 (365)
T 4h5i_A 158 IMRIIDPSDLTEKFEI-ET--RG--EVKDLHFSTDGKVVAYIT------------GSSLEVISTVTGSCIARKTD-FDKN 219 (365)
T ss_dssp EEEEEETTTTEEEEEE-EC--SS--CCCEEEECTTSSEEEEEC------------SSCEEEEETTTCCEEEEECC-CCTT
T ss_pred EEEEeECCCCcEEEEe-CC--CC--ceEEEEEccCCceEEecc------------ceeEEEEEeccCcceeeeec-CCCC
Confidence 5888999887764321 11 11 11233332 455666555 13456667666554332211 0001
Q ss_pred CCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEE-eCCEEEEEcCccCCCCccC
Q 008089 190 ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYD 268 (578)
Q Consensus 190 ~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~-~~~~iyV~GG~~~~~~~~~ 268 (578)
..........++..++.++.++.. ...++.+|.....+..............-.+++. -++++++.|+.+.
T Consensus 220 ~~v~~v~fspdg~~l~~~s~d~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~------ 291 (365)
T 4h5i_A 220 WSLSKINFIADDTVLIAASLKKGK--GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN------ 291 (365)
T ss_dssp EEEEEEEEEETTEEEEEEEESSSC--CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS------
T ss_pred CCEEEEEEcCCCCEEEEEecCCcc--eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC------
Confidence 111111223478888887765432 1236667766555443321000001111112222 2567788887643
Q ss_pred cEEEEECCCCcEEEEEeCCCCCCCceeeeEeeeeccCCCEEEEEccccCC
Q 008089 269 DLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (578)
Q Consensus 269 dv~~ydi~t~~W~~l~~~~~~P~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (578)
.|.+||+.+..-......+ ......++++ ..++.+++.|+.+..
T Consensus 292 ~V~iwd~~~~~~~~~~~~g----H~~~V~~v~f--Spdg~~laS~S~D~t 335 (365)
T 4h5i_A 292 SIALVKLKDLSMSKIFKQA----HSFAITEVTI--SPDSTYVASVSAANT 335 (365)
T ss_dssp CEEEEETTTTEEEEEETTS----SSSCEEEEEE--CTTSCEEEEEETTSE
T ss_pred EEEEEECCCCcEEEEecCc----ccCCEEEEEE--CCCCCEEEEEeCCCe
Confidence 4899999887532211111 1222333334 457778888876543
No 296
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=29.72 E-value=3.4e+02 Score=29.63 Aligned_cols=111 Identities=5% Similarity=-0.098 Sum_probs=52.1
Q ss_pred CcEEEEECCCCeEEecccCCCCCCCC--ccc-EEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCC
Q 008089 110 RDLHILDTSSHTWISPSVRGEGPEAR--EGH-SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 186 (578)
Q Consensus 110 ~~v~~yD~~t~~W~~l~~~g~~P~~R--~~h-s~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~ 186 (578)
..++.||+.+++-..+- .+...... ... -....+++.++++..... .....+..++++||+.+.+...+...
T Consensus 36 ~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~--~~r~~~~~~~~~~d~~~~~~~~l~~~-- 110 (740)
T 4a5s_A 36 NNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISPDGQFILLEYNYVK--QWRHSYTASYDIYDLNKRQLITEERI-- 110 (740)
T ss_dssp TEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECTTSSEEEEEEEEEE--CSSSCEEEEEEEEETTTTEECCSSCC--
T ss_pred CcEEEEECCCCceEEEE-echhhhhhcccccceEECCCCCEEEEEECCee--eEEEccceEEEEEECCCCcEEEcccC--
Confidence 36899999888754432 11111110 010 111224444444442110 11123457889999999887665421
Q ss_pred CCCCCCceeEEEeCCEEEEEecCCCCCcccCceEEEECCCCceEEecC
Q 008089 187 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT 234 (578)
Q Consensus 187 ~p~~R~~h~~~~~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~ 234 (578)
+ .........-+++.++|+- -++|+++|..+..-..+..
T Consensus 111 -~-~~~~~~~~SPdG~~la~~~-------~~~i~~~~~~~~~~~~lt~ 149 (740)
T 4a5s_A 111 -P-NNTQWVTWSPVGHKLAYVW-------NNDIYVKIEPNLPSYRITW 149 (740)
T ss_dssp -C-TTEEEEEECSSTTCEEEEE-------TTEEEEESSTTSCCEECCS
T ss_pred -C-CcceeeEECCCCCEEEEEE-------CCeEEEEECCCCceEEEcC
Confidence 1 1112222223454444441 1357777776665555443
No 297
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=28.69 E-value=3.4e+02 Score=26.66 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=43.0
Q ss_pred EEEcCCCEEEEEcCCC----CCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCc
Q 008089 38 NAIKGGRFLYVFGGYG----KDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRD 111 (578)
Q Consensus 38 v~v~~g~~Iyv~GG~~----~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~ 111 (578)
+...+++++|+....+ ......+.++++|+.+.+=.. .++... -++++.. +.+||+.++ +.
T Consensus 260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~-----~i~~~~-p~~ia~spdg~~l~v~n~-------~~ 326 (361)
T 2oiz_A 260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVA-----RIPGRD-ALSMTIDQQRNLMLTLDG-------GN 326 (361)
T ss_dssp EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEE-----EEECTT-CCEEEEETTTTEEEEECS-------SC
T ss_pred EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEE-----EEecCC-eeEEEECCCCCEEEEeCC-------Ce
Confidence 3455678899875411 111134679999999876433 122222 3444443 456776542 67
Q ss_pred EEEEECCCC--eEE
Q 008089 112 LHILDTSSH--TWI 123 (578)
Q Consensus 112 v~~yD~~t~--~W~ 123 (578)
+.+||+.+. +-.
T Consensus 327 v~v~D~~t~~l~~~ 340 (361)
T 2oiz_A 327 VNVYDISQPEPKLL 340 (361)
T ss_dssp EEEEECSSSSCEEE
T ss_pred EEEEECCCCcceee
Confidence 999999987 543
No 298
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=27.95 E-value=6.5e+02 Score=27.78 Aligned_cols=150 Identities=12% Similarity=0.049 Sum_probs=78.2
Q ss_pred cccEEEEEcCC--CcEEEeeecCCCCCCCcceeEEEECCEEEEEcccC--C---CCCCCcEEEEECCC--------CeEE
Q 008089 59 TNQVHVFDTVN--QTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTD--G---MNPLRDLHILDTSS--------HTWI 123 (578)
Q Consensus 59 ~~~v~~yD~~t--~~W~~l~~~g~~P~~R~~hs~~~~~~kIYv~GG~~--~---~~~~~~v~~yD~~t--------~~W~ 123 (578)
.+.+|+.|... ..|.++. .|+...-....++++|+....+ . .-+...+..+|+.+ ..|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 341 (711)
T 4hvt_A 268 NYDNYILDTKYKNLKLQKIN------MPSDATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLK 341 (711)
T ss_dssp CEEEEEEECSSSSCEEEECC------SCTTCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCE
T ss_pred ceeEEEEcCCCCCCcceEee------cCCcceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccce
Confidence 36778887653 5677752 2333222456699999987543 1 11456799999765 3576
Q ss_pred ecccCCCCCCCC-cccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEE--e-
Q 008089 124 SPSVRGEGPEAR-EGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS--W- 199 (578)
Q Consensus 124 ~l~~~g~~P~~R-~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~--~- 199 (578)
.+-. |... .-......++.|++..-. .-...++++|+.+..|...... ..|.. ....... .
T Consensus 342 ~~~~----~~~~~~l~~~~~~~~~l~~~~~~---------~~~~~l~~~~~~~g~~~~~~~i-~lp~~-~~~~~~~~~~~ 406 (711)
T 4hvt_A 342 ILFT----PTANEVFNFISTTKDRVFLATYD---------NVVAKVVTFTLENEQWTKPVVL-KLPYQ-NAIFGMSSYEE 406 (711)
T ss_dssp EEEC----CCTTEEEEEEEECSSCEEEEEEE---------TTEEEEEEECEETTEECCCEEE-CCCST-TCEEEEECCTT
T ss_pred EEEC----CCCCCeEEEEEEECCEEEEEEEE---------CCEEEEEEEECCCCceEEEecc-CCCCC-eEEEEEeecCc
Confidence 5321 2111 222334445666654221 1145688899888877432100 12221 1122221 1
Q ss_pred CCEEEE-EecCCCCCcccCceEEEECCCCceEEecC
Q 008089 200 KNKIIV-IGGEDGHDYYLSDVHILDTDTLTWKELNT 234 (578)
Q Consensus 200 ~~~lyV-~GG~~~~~~~~~di~~yD~~t~~W~~v~~ 234 (578)
++.+++ +.+.. ....++.+|+. ..++.+..
T Consensus 407 ~~~~~~~~ss~~----~P~~~~~~d~~-~~~~~l~~ 437 (711)
T 4hvt_A 407 EEEALITIENSI----VPPTIYLWVKT-HELKIIRK 437 (711)
T ss_dssp CSCEEEEEECSS----SCCEEEEECTT-SCEEEEEC
T ss_pred CCEEEEEEecCC----CCCEEEEEeCC-CcEEEEec
Confidence 233333 33333 23568899988 77777765
No 299
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=27.84 E-value=4.2e+02 Score=25.60 Aligned_cols=68 Identities=10% Similarity=0.031 Sum_probs=31.5
Q ss_pred EEEcCCCCCCCCcccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEECCE-EEEEcccCCCCCCCcEEEEECC-CCeEE
Q 008089 47 YVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGEN-LYVFGGTDGMNPLRDLHILDTS-SHTWI 123 (578)
Q Consensus 47 yv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~k-IYv~GG~~~~~~~~~v~~yD~~-t~~W~ 123 (578)
+++|++.... .-.++.+|..+++...+............+.+..-+++ ||+.. .+ .+.+||+. +.+..
T Consensus 5 ~~vg~~~~~~--~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~-~~------~v~~~~~~~~g~~~ 74 (365)
T 1jof_A 5 LMIGTWTPPG--AIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA-MK------KWSSFAVKSPTEIV 74 (365)
T ss_dssp EEEEESSSSC--EEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE-BT------EEEEEEEEETTEEE
T ss_pred EEEEEccCCC--cEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEc-cc------eEEEEEECCCCCEE
Confidence 3447764321 11244566778887765421100011112222222444 66543 22 58888876 66554
No 300
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=27.63 E-value=5.9e+02 Score=27.85 Aligned_cols=149 Identities=12% Similarity=0.100 Sum_probs=77.4
Q ss_pred ECCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEE--ECCEEEEEccCCCCCCCCCceeeceEEE
Q 008089 93 VGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAAL--VGKRLFIFGGCGKSSNTNDEVYYNDLYI 170 (578)
Q Consensus 93 ~~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~--~~~~lyvfGG~~~~~~~~~~~~~ndv~~ 170 (578)
.+++||+.-. ..+.|+++++....-..+.. ..+..|+ ++++ .++.||+..- . ....|++
T Consensus 463 ~~g~LY~tD~-----~~~~I~v~d~dg~~~~~l~~-~~~~~P~---giavDp~~g~ly~td~-~---------~~~~I~~ 523 (699)
T 1n7d_A 463 IHSNIYWTDS-----VLGTVSVADTKGVKRKTLFR-EQGSKPR---AIVVDPVHGFMYWTDW-G---------TPAKIKK 523 (699)
T ss_dssp SSSBCEECCT-----TTSCEEEEBSSSCCEEEECC-CSSCCCC---CEECCSSSSCCEECCC-S---------SSCCEEB
T ss_pred eCCcEEEEec-----cCCeEEEEecCCCceEEEEe-CCCCCcc---eEEEccCCCcEEEccc-C---------CCCeEEE
Confidence 3678888632 13568999987654433221 1122222 2333 2467777431 0 0145777
Q ss_pred EEcCcceEEEeccCCCCCCCCCceeEEE--eCCEEEEEecCCCCCcccCceEEEECCCCceEEecCC-CCCCCCCceeEE
Q 008089 171 LNTETFVWKRATTSGNPPSARDSHTCSS--WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS-GMVLSPRAGHST 247 (578)
Q Consensus 171 yd~~t~~W~~~~~~g~~p~~R~~h~~~~--~~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~-g~~p~~R~~hs~ 247 (578)
+++....-+.+... ... .-..+++ .+++||+.-.. .+.|+++|+....-+.+... +.. ..-.++
T Consensus 524 ~~~dG~~~~~l~~~-~l~---~PnGlavd~~~~~LY~aD~~------~~~I~~~d~dG~~~~~~~~~~~~~---~~P~gl 590 (699)
T 1n7d_A 524 GGLNGVDIYSLVTE-NIQ---WPNGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRL---AHPFSL 590 (699)
T ss_dssp CCSSSCCCCEESCS-SCS---SCCCEEECTTTCCEEEEETT------TTEEEEECSSSSCCEEECCCSSSC---SSCCCC
T ss_pred EeCCCCCeeEEEeC-CCC---CccEEEEeccCCEEEEEecC------CCeEEEEccCCCceEEEEecCCcC---CCceEe
Confidence 77654433322211 111 1123333 25789987532 35689999876544444321 111 122345
Q ss_pred EEeCCEEEEEcCccCCCCccCcEEEEECCCCc
Q 008089 248 VAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (578)
Q Consensus 248 v~~~~~iyV~GG~~~~~~~~~dv~~ydi~t~~ 279 (578)
++.++.||+.-.. .+.|+++|..++.
T Consensus 591 avd~~~lywtd~~------~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 591 AVFEDKVFWTDII------NEAIFSANRLTGS 616 (699)
T ss_dssp EEETTEEEEECST------TTCEEEEETTTEE
T ss_pred EEECCEEEEEeCC------CCeEEEEEccCCC
Confidence 5678889988632 2468999977654
No 301
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=27.07 E-value=1.4e+02 Score=28.03 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=40.6
Q ss_pred EEEEEcCCCEEEEEcCCCCCCCCcccEEEEEcCCCcEEE-ee-ecCCCCC------CCcceeEEE--ECCEEEEEcccCC
Q 008089 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQ-PV-IKGSPPT------PRDSHSCTT--VGENLYVFGGTDG 105 (578)
Q Consensus 36 s~v~v~~g~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~-l~-~~g~~P~------~R~~hs~~~--~~~kIYv~GG~~~ 105 (578)
+++....++++|+|-| +.+|+||...++... +. +....|. +..-.++.. .++++|+|-|
T Consensus 120 AA~~~~~~gk~yfFkG--------~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG--- 188 (225)
T 3oyo_A 120 SAFRSTKGKEVYLFKG--------NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG--- 188 (225)
T ss_dssp EEEECSSTTEEEEEET--------TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET---
T ss_pred eEEEECCCCcEEEEeC--------CeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC---
Confidence 3333344668999987 468999977665432 11 1101121 222233444 3789999987
Q ss_pred CCCCCcEEEEECC
Q 008089 106 MNPLRDLHILDTS 118 (578)
Q Consensus 106 ~~~~~~v~~yD~~ 118 (578)
+..|+||..
T Consensus 189 ----~~ywr~d~~ 197 (225)
T 3oyo_A 189 ----QNYVRIDFT 197 (225)
T ss_dssp ----TEEEEEECC
T ss_pred ----CEEEEEeCC
Confidence 469999987
No 302
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=26.08 E-value=4.4e+02 Score=25.24 Aligned_cols=181 Identities=9% Similarity=0.063 Sum_probs=96.6
Q ss_pred ccEEEEEcCCCcEEEeeecCCCCCCCcceeEEEE--CCEEEEEcccCCCCCCCcEEEEECCC----CeEEecccCCCCCC
Q 008089 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSS----HTWISPSVRGEGPE 133 (578)
Q Consensus 60 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~kIYv~GG~~~~~~~~~v~~yD~~t----~~W~~l~~~g~~P~ 133 (578)
+.+.++|+.+.....+. +....-++.+.. +++||+.... ...++++++.. .....+- ...+..
T Consensus 10 ~~I~~i~~~~~~~~~~~-----~~~~~p~g~~~d~~~~~ly~~D~~-----~~~I~~~~~~g~~~~~~~~~~~-~~~~~~ 78 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLI-----PNLRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVI-SRDIQA 78 (316)
T ss_dssp SSEEEEETTSCCCEEEE-----CSCSSEEEEEEETTTTEEEEEETT-----TTEEEEEEC--------CEEEE-CSSCSC
T ss_pred CeEEEEECCCcceEehh-----cCCCceEEEEEEeCCCEEEEEECC-----CCcEEEEECCCCCCCcccEEEE-eCCCCC
Confidence 45889999887766543 122233445444 5789998642 35799999876 2212111 111111
Q ss_pred CCcccEEEE--ECCEEEEEccCCCCCCCCCceeeceEEEEEcCcceEEEeccCCCCCCCCCceeEEE--eCCEEEEEecC
Q 008089 134 AREGHSAAL--VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS--WKNKIIVIGGE 209 (578)
Q Consensus 134 ~R~~hs~~~--~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~~t~~W~~~~~~g~~p~~R~~h~~~~--~~~~lyV~GG~ 209 (578)
-.++++ .+++||+.-.. .+.++++|+....-+.+... ....| ..+++ .++.||+..-.
T Consensus 79 ---p~glavd~~~~~ly~~d~~-----------~~~I~~~~~~g~~~~~~~~~-~~~~P---~~iavdp~~g~ly~~d~~ 140 (316)
T 1ijq_A 79 ---PDGLAVDWIHSNIYWTDSV-----------LGTVSVADTKGVKRKTLFRE-NGSKP---RAIVVDPVHGFMYWTDWG 140 (316)
T ss_dssp ---CCEEEEETTTTEEEEEETT-----------TTEEEEEETTSSSEEEEEEC-TTCCE---EEEEEETTTTEEEEEECS
T ss_pred ---cCEEEEeecCCeEEEEECC-----------CCEEEEEeCCCCceEEEEEC-CCCCc---ceEEeCCCCCEEEEEccC
Confidence 234444 36789997441 25678888876544333211 11111 23344 36889987532
Q ss_pred CCCCcccCceEEEECCCCceEEecCCCCCCCCCceeEEEEe--CCEEEEEcCccCCCCccCcEEEEECCCCcEEEEE
Q 008089 210 DGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (578)
Q Consensus 210 ~~~~~~~~di~~yD~~t~~W~~v~~~g~~p~~R~~hs~v~~--~~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~l~ 284 (578)
. ...|+++++....-+.+... .. ..-..+++- ++.||+.-.. .+.|+++|+....-+.+.
T Consensus 141 ~-----~~~I~~~~~dG~~~~~~~~~---~~-~~P~gla~d~~~~~lY~~D~~------~~~I~~~d~dg~~~~~~~ 202 (316)
T 1ijq_A 141 T-----PAKIKKGGLNGVDIYSLVTE---NI-QWPNGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTIL 202 (316)
T ss_dssp S-----SCEEEEEETTSCCEEEEECS---SC-SCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEE
T ss_pred C-----CCeEEEEcCCCCCeEEEEEC---CC-CCceEEEEeccCCEEEEEECC------CCeEEEEecCCCceEEEe
Confidence 1 24689999876544443221 11 112233333 5789987543 356999998865444443
No 303
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=20.92 E-value=9.2e+02 Score=27.08 Aligned_cols=149 Identities=11% Similarity=0.062 Sum_probs=69.5
Q ss_pred CCEEEEEcccCCCCCCCcEEEEECCCCeEEecccCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCceeeceEEEEEc
Q 008089 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (578)
Q Consensus 94 ~~kIYv~GG~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~lyvfGG~~~~~~~~~~~~~ndv~~yd~ 173 (578)
++++++.|+.++ .+.+||..+.+-.... +....-.+++...+++++.|+. ...+.++|+
T Consensus 28 dg~~lAsgs~Dg-----~I~lw~~~~~~~~~~~-----~~~~~V~~l~fspg~~L~S~s~-----------D~~v~lWd~ 86 (902)
T 2oaj_A 28 TQNLLAIATVTG-----EVHIYGQQQVEVVIKL-----EDRSAIKEMRFVKGIYLVVINA-----------KDTVYVLSL 86 (902)
T ss_dssp TTTEEEEEETTS-----EEEEECSTTCEEEEEC-----SSCCCEEEEEEETTTEEEEEET-----------TCEEEEEET
T ss_pred CCCEEEEEeCCC-----EEEEEeCCCcEEEEEc-----CCCCCEEEEEEcCCCEEEEEEC-----------cCeEEEEEC
Confidence 445566665542 4666666554432211 1111122333344554555552 245778888
Q ss_pred CcceEEEeccCCCCCCCCCceeEEEe--CCEEEEEecCCCCCcccCceEEEECCCCceEEecCCC-----CCCC--CCce
Q 008089 174 ETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSG-----MVLS--PRAG 244 (578)
Q Consensus 174 ~t~~W~~~~~~g~~p~~R~~h~~~~~--~~~lyV~GG~~~~~~~~~di~~yD~~t~~W~~v~~~g-----~~p~--~R~~ 244 (578)
.+.+....-. .+ ..-.++.+ ++..++.|+.++ .+.+||+.+..-....... ..+. .-.-
T Consensus 87 ~~~~~~~~~~---~~---~~V~~v~~sp~g~~l~sgs~dg------~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V 154 (902)
T 2oaj_A 87 YSQKVLTTVF---VP---GKITSIDTDASLDWMLIGLQNG------SMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPI 154 (902)
T ss_dssp TTCSEEEEEE---CS---SCEEEEECCTTCSEEEEEETTS------CEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCC
T ss_pred CCCcEEEEEc---CC---CCEEEEEECCCCCEEEEEcCCC------cEEEEECCCCccccceeccccccccccccCCCCe
Confidence 7654322111 01 11122222 556666776543 3788998877543211100 0000 0111
Q ss_pred eEEEEeC--CEEEEEcCccCCCCccCcEEEEECCCCcEEE
Q 008089 245 HSTVAFG--KNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (578)
Q Consensus 245 hs~v~~~--~~iyV~GG~~~~~~~~~dv~~ydi~t~~W~~ 282 (578)
.+++... ..+++.|+.+ ..+ +||+.+..-..
T Consensus 155 ~sl~~sp~~~~~l~~g~~d------g~v-lWd~~~~~~~~ 187 (902)
T 2oaj_A 155 VSIQWNPRDIGTVLISYEY------VTL-TYSLVENEIKQ 187 (902)
T ss_dssp CEEEEETTEEEEEEEECSS------CEE-EEETTTTEEEE
T ss_pred EEEEEccCCCCEEEEEeCC------CcE-EEECCCCceEE
Confidence 2233343 2566676543 247 99999886543
Done!