Query 008090
Match_columns 578
No_of_seqs 176 out of 1743
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 19:20:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008090.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008090hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 7E-106 2E-110 873.7 62.3 538 31-578 1-539 (539)
2 PLN00044 multi-copper oxidase- 100.0 9E-105 2E-109 857.0 59.7 536 13-578 5-554 (596)
3 PLN02991 oxidoreductase 100.0 8E-102 2E-106 829.7 59.3 496 28-578 23-530 (543)
4 PLN02835 oxidoreductase 100.0 4E-101 9E-106 828.9 60.3 499 28-578 24-531 (539)
5 PLN02792 oxidoreductase 100.0 3E-101 7E-106 826.7 58.3 507 30-578 13-523 (536)
6 PLN02354 copper ion binding / 100.0 1E-100 3E-105 825.8 59.8 506 29-578 23-538 (552)
7 KOG1263 Multicopper oxidases [ 100.0 6E-100 1E-104 810.3 58.7 534 23-578 18-555 (563)
8 PLN02168 copper ion binding / 100.0 6E-100 1E-104 817.1 59.0 501 30-578 23-541 (545)
9 PLN02604 oxidoreductase 100.0 6.4E-95 1.4E-99 789.4 59.7 524 20-578 11-561 (566)
10 PLN02191 L-ascorbate oxidase 100.0 3.7E-94 8E-99 781.4 57.2 515 29-578 19-561 (574)
11 TIGR03388 ascorbase L-ascorbat 100.0 1.1E-93 2.5E-98 777.6 57.4 512 33-578 1-538 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 2.7E-90 5.9E-95 748.8 53.8 495 34-563 9-536 (538)
13 TIGR01480 copper_res_A copper- 100.0 3.7E-77 8.1E-82 645.0 51.2 423 34-559 46-587 (587)
14 PRK10965 multicopper oxidase; 100.0 5.2E-73 1.1E-77 608.7 46.6 427 34-559 46-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 2.5E-71 5.5E-76 590.9 43.8 402 35-560 47-469 (471)
16 COG2132 SufI Putative multicop 100.0 1.3E-57 2.8E-62 488.2 41.7 400 47-560 47-450 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 3.6E-46 7.8E-51 377.6 24.8 264 30-319 24-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 9.4E-35 2E-39 251.4 11.7 116 39-154 1-117 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 6.2E-29 1.3E-33 223.9 11.0 108 449-560 29-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 4.4E-26 9.4E-31 209.8 13.5 149 165-317 1-158 (159)
21 TIGR01480 copper_res_A copper- 99.7 6.9E-16 1.5E-20 168.2 21.5 227 54-296 248-572 (587)
22 TIGR03095 rusti_cyanin rusticy 99.7 2E-16 4.3E-21 142.2 11.9 101 49-151 38-148 (148)
23 TIGR02376 Cu_nitrite_red nitri 99.7 9.5E-15 2.1E-19 148.4 24.4 240 196-561 47-298 (311)
24 PRK10965 multicopper oxidase; 99.5 8.3E-13 1.8E-17 143.1 22.6 235 51-297 211-509 (523)
25 TIGR03096 nitroso_cyanin nitro 99.5 1.3E-13 2.9E-18 119.4 11.6 116 17-148 8-131 (135)
26 PLN02835 oxidoreductase 99.5 5.1E-12 1.1E-16 137.4 21.0 239 52-296 191-497 (539)
27 PRK10883 FtsI repressor; Provi 99.4 6E-12 1.3E-16 135.1 20.7 220 50-298 207-455 (471)
28 TIGR03389 laccase laccase, pla 99.4 1.2E-11 2.6E-16 135.5 22.3 240 53-296 167-505 (539)
29 COG2132 SufI Putative multicop 99.3 4.1E-11 8.9E-16 129.0 18.1 233 49-297 186-435 (451)
30 PLN02168 copper ion binding / 99.3 5.6E-10 1.2E-14 121.3 22.4 240 52-296 188-501 (545)
31 PLN02991 oxidoreductase 99.2 1.3E-09 2.9E-14 118.2 22.9 241 51-296 189-496 (543)
32 PLN02354 copper ion binding / 99.2 1.1E-09 2.3E-14 119.6 22.0 239 53-296 190-504 (552)
33 PLN02792 oxidoreductase 99.2 1.8E-09 3.9E-14 117.3 22.9 241 51-296 178-489 (536)
34 TIGR03388 ascorbase L-ascorbat 99.2 2E-09 4.4E-14 118.0 22.7 228 65-296 204-509 (541)
35 PLN02604 oxidoreductase 99.2 1.1E-09 2.4E-14 120.5 19.8 229 64-296 224-532 (566)
36 TIGR03390 ascorbOXfungal L-asc 99.2 1.2E-09 2.6E-14 119.5 19.9 239 53-296 172-517 (538)
37 PLN02191 L-ascorbate oxidase 99.0 1.7E-08 3.7E-13 111.0 20.6 234 57-296 219-532 (574)
38 PF07731 Cu-oxidase_2: Multico 99.0 4.8E-09 1E-13 94.2 10.9 79 215-297 32-121 (138)
39 PLN00044 multi-copper oxidase- 98.9 1.6E-07 3.5E-12 102.9 20.4 228 64-296 217-519 (596)
40 PF07732 Cu-oxidase_3: Multico 98.7 7.8E-08 1.7E-12 83.3 8.8 91 453-561 25-116 (117)
41 PRK02710 plastocyanin; Provisi 98.6 8.9E-07 1.9E-11 77.0 11.8 73 64-151 47-119 (119)
42 PF13473 Cupredoxin_1: Cupredo 98.5 3.5E-07 7.6E-12 77.7 6.3 70 64-150 35-104 (104)
43 KOG1263 Multicopper oxidases [ 98.4 2.2E-05 4.8E-10 85.4 19.8 261 32-296 158-521 (563)
44 TIGR02656 cyanin_plasto plasto 98.1 1.1E-05 2.4E-10 67.8 7.8 81 64-151 17-99 (99)
45 TIGR03095 rusti_cyanin rusticy 98.0 2.2E-05 4.8E-10 70.8 8.4 93 453-559 51-148 (148)
46 PRK02888 nitrous-oxide reducta 98.0 3.6E-05 7.9E-10 83.4 10.0 100 43-153 532-635 (635)
47 PF00394 Cu-oxidase: Multicopp 97.9 3.8E-05 8.3E-10 70.6 7.9 94 453-560 59-157 (159)
48 PF00127 Copper-bind: Copper b 97.9 3.3E-05 7.2E-10 64.9 6.7 82 64-151 17-99 (99)
49 TIGR02657 amicyanin amicyanin. 97.8 7.8E-05 1.7E-09 60.4 8.0 73 64-151 11-83 (83)
50 TIGR03094 sulfo_cyanin sulfocy 97.8 0.00038 8.2E-09 63.0 12.5 98 54-155 74-189 (195)
51 PF06525 SoxE: Sulfocyanin (So 97.8 0.00033 7.2E-09 64.8 12.4 102 53-155 74-190 (196)
52 TIGR02656 cyanin_plasto plasto 97.4 0.0007 1.5E-08 56.8 7.7 83 454-559 17-99 (99)
53 TIGR02375 pseudoazurin pseudoa 97.2 0.0017 3.7E-08 55.8 8.5 75 64-154 15-90 (116)
54 COG3794 PetE Plastocyanin [Ene 97.1 0.0024 5.2E-08 55.5 8.3 75 64-152 54-128 (128)
55 TIGR03096 nitroso_cyanin nitro 96.9 0.0048 1E-07 54.1 7.8 60 454-544 61-120 (135)
56 TIGR03102 halo_cynanin halocya 96.8 0.01 2.2E-07 51.0 9.1 73 64-151 42-115 (115)
57 PF00127 Copper-bind: Copper b 96.7 0.0086 1.9E-07 50.2 7.9 84 453-559 16-99 (99)
58 PRK02888 nitrous-oxide reducta 96.2 0.021 4.6E-07 62.4 9.2 78 455-560 556-634 (635)
59 PF13473 Cupredoxin_1: Cupredo 96.1 0.024 5.1E-07 48.0 7.2 60 217-296 35-94 (104)
60 COG4454 Uncharacterized copper 95.4 0.063 1.4E-06 47.8 7.4 94 455-559 64-157 (158)
61 PRK02710 plastocyanin; Provisi 95.3 0.068 1.5E-06 46.4 7.4 73 454-559 47-119 (119)
62 COG4454 Uncharacterized copper 95.2 0.19 4.1E-06 44.8 9.7 88 60-152 59-158 (158)
63 TIGR02375 pseudoazurin pseudoa 94.6 0.28 6E-06 42.2 9.0 36 522-561 54-89 (116)
64 PRK10378 inactive ferrous ion 94.6 0.3 6.6E-06 50.7 10.9 78 60-153 40-118 (375)
65 PF00116 COX2: Cytochrome C ox 94.4 0.25 5.5E-06 42.9 8.5 72 64-150 46-119 (120)
66 TIGR02695 azurin azurin. Azuri 93.9 0.26 5.6E-06 42.5 7.2 86 64-149 16-124 (125)
67 TIGR03102 halo_cynanin halocya 92.0 1.1 2.4E-05 38.4 8.6 75 453-559 41-115 (115)
68 PF06525 SoxE: Sulfocyanin (So 91.8 2 4.4E-05 40.1 10.6 97 451-561 83-188 (196)
69 TIGR02657 amicyanin amicyanin. 90.5 1.4 3E-05 35.4 7.4 73 454-559 11-83 (83)
70 TIGR02866 CoxB cytochrome c ox 90.2 2.1 4.5E-05 40.8 9.5 76 64-154 117-194 (201)
71 PF12690 BsuPI: Intracellular 89.0 4.2 9.1E-05 32.6 8.9 68 226-294 3-82 (82)
72 TIGR02695 azurin azurin. Azuri 88.9 1.1 2.4E-05 38.7 5.8 79 217-295 16-111 (125)
73 PF00116 COX2: Cytochrome C ox 88.0 5.4 0.00012 34.6 9.7 75 452-558 44-119 (120)
74 TIGR02866 CoxB cytochrome c ox 85.7 3.5 7.6E-05 39.3 8.0 77 453-561 116-193 (201)
75 TIGR03094 sulfo_cyanin sulfocy 83.7 8.6 0.00019 35.5 8.9 99 452-560 83-186 (195)
76 PF12690 BsuPI: Intracellular 82.7 3 6.4E-05 33.5 5.1 58 65-133 17-80 (82)
77 COG1622 CyoA Heme/copper-type 82.6 7.1 0.00015 38.4 8.7 77 64-155 137-215 (247)
78 COG3794 PetE Plastocyanin [Ene 79.1 9.3 0.0002 33.4 7.3 74 455-560 55-128 (128)
79 COG1622 CyoA Heme/copper-type 77.0 10 0.00023 37.2 7.8 78 453-562 136-214 (247)
80 COG4263 NosZ Nitrous oxide red 74.4 5.4 0.00012 41.9 5.2 77 64-151 558-636 (637)
81 COG1470 Predicted membrane pro 72.4 1.4E+02 0.0031 31.9 17.3 178 66-299 278-470 (513)
82 MTH00047 COX2 cytochrome c oxi 68.2 1.1E+02 0.0024 28.9 12.4 75 65-154 117-193 (194)
83 PF01835 A2M_N: MG2 domain; I 64.9 21 0.00046 29.3 6.1 73 220-296 10-85 (99)
84 PF05506 DUF756: Domain of unk 64.3 61 0.0013 26.2 8.6 63 63-134 8-73 (89)
85 KOG4063 Major epididymal secre 63.4 84 0.0018 28.2 9.5 61 65-125 49-123 (158)
86 PF10633 NPCBM_assoc: NPCBM-as 63.2 11 0.00024 29.7 3.9 61 68-132 1-70 (78)
87 COG2967 ApaG Uncharacterized p 63.2 12 0.00027 31.8 4.2 49 75-124 33-87 (126)
88 PF07705 CARDB: CARDB; InterP 57.8 99 0.0021 24.9 9.1 67 220-296 14-83 (101)
89 TIGR03079 CH4_NH3mon_ox_B meth 56.2 39 0.00084 34.8 7.1 16 109-124 337-352 (399)
90 MTH00047 COX2 cytochrome c oxi 55.5 88 0.0019 29.6 9.1 77 453-561 115-192 (194)
91 TIGR01433 CyoA cytochrome o ub 55.4 30 0.00064 33.6 6.1 76 454-561 139-215 (226)
92 MTH00140 COX2 cytochrome c oxi 53.3 47 0.001 32.3 7.2 78 452-561 138-216 (228)
93 PF04151 PPC: Bacterial pre-pe 52.4 76 0.0017 24.1 6.9 66 216-295 4-69 (70)
94 PF05938 Self-incomp_S1: Plant 49.6 52 0.0011 27.7 6.1 67 75-151 2-69 (110)
95 MTH00140 COX2 cytochrome c oxi 49.2 48 0.001 32.2 6.5 62 218-300 141-202 (228)
96 PF10633 NPCBM_assoc: NPCBM-as 44.1 1.5E+02 0.0033 23.0 7.7 65 222-295 2-74 (78)
97 PTZ00047 cytochrome c oxidase 43.1 96 0.0021 28.3 6.8 77 452-560 71-148 (162)
98 PRK05461 apaG CO2+/MG2+ efflux 42.2 47 0.001 29.1 4.6 20 101-121 66-85 (127)
99 PF10989 DUF2808: Protein of u 41.6 74 0.0016 28.5 6.0 34 268-301 98-132 (146)
100 PF05753 TRAP_beta: Translocon 40.1 1.2E+02 0.0025 28.4 7.2 25 108-132 79-104 (181)
101 MTH00008 COX2 cytochrome c oxi 39.7 86 0.0019 30.5 6.6 62 218-300 141-202 (228)
102 PF04379 DUF525: Protein of un 39.6 57 0.0012 26.6 4.5 49 226-277 15-67 (90)
103 TIGR01432 QOXA cytochrome aa3 39.3 69 0.0015 30.8 5.8 76 454-561 130-206 (217)
104 PF06030 DUF916: Bacterial pro 39.1 2.2E+02 0.0047 24.6 8.3 60 65-124 20-101 (121)
105 COG1188 Ribosome-associated he 38.8 23 0.0005 29.4 2.0 29 54-82 35-63 (100)
106 MTH00129 COX2 cytochrome c oxi 38.7 99 0.0022 30.1 6.8 78 452-561 138-216 (230)
107 TIGR01433 CyoA cytochrome o ub 37.9 77 0.0017 30.8 5.9 62 218-300 140-201 (226)
108 PRK10378 inactive ferrous ion 36.3 1.4E+02 0.0031 31.3 7.9 63 216-296 43-105 (375)
109 PF04744 Monooxygenase_B: Mono 36.1 89 0.0019 32.3 6.1 98 10-124 200-333 (381)
110 MTH00098 COX2 cytochrome c oxi 35.8 1.2E+02 0.0027 29.4 6.9 78 452-561 138-216 (227)
111 MTH00098 COX2 cytochrome c oxi 35.8 1.1E+02 0.0024 29.7 6.6 62 218-300 141-202 (227)
112 MTH00129 COX2 cytochrome c oxi 35.7 93 0.002 30.3 6.1 62 218-300 141-202 (230)
113 PRK05461 apaG CO2+/MG2+ efflux 35.6 91 0.002 27.3 5.4 49 226-277 32-84 (127)
114 PF07172 GRP: Glycine rich pro 35.5 24 0.00051 29.2 1.7 9 23-31 17-25 (95)
115 COG3241 Azurin [Energy product 35.4 44 0.00096 28.6 3.2 41 255-295 91-135 (151)
116 cd00916 Npc2_like Niemann-Pick 34.2 2.2E+02 0.0048 24.5 7.7 62 64-125 22-92 (123)
117 PF07691 PA14: PA14 domain; I 34.1 2.5E+02 0.0054 24.3 8.4 61 219-284 54-121 (145)
118 cd00918 Der-p2_like Several gr 33.6 2.3E+02 0.0049 24.5 7.5 62 63-125 19-88 (120)
119 PRK10449 heat-inducible protei 33.3 48 0.001 29.5 3.4 15 46-60 29-43 (140)
120 PF11142 DUF2917: Protein of u 32.6 1.4E+02 0.0031 22.5 5.4 47 219-277 2-48 (63)
121 COG3354 FlaG Putative archaeal 31.9 3.7E+02 0.0081 24.0 9.9 64 225-295 70-141 (154)
122 PF08139 LPAM_1: Prokaryotic m 31.6 65 0.0014 19.6 2.6 16 12-27 7-22 (25)
123 MTH00051 COX2 cytochrome c oxi 31.4 1.3E+02 0.0028 29.4 6.3 62 218-300 145-206 (234)
124 MTH00008 COX2 cytochrome c oxi 31.2 2E+02 0.0044 27.9 7.6 78 452-561 138-216 (228)
125 MTH00185 COX2 cytochrome c oxi 30.7 1.6E+02 0.0034 28.7 6.7 62 218-300 141-202 (230)
126 TIGR01432 QOXA cytochrome aa3 29.9 1.1E+02 0.0024 29.4 5.6 62 218-300 131-192 (217)
127 PF11322 DUF3124: Protein of u 29.8 3.1E+02 0.0067 23.9 7.5 54 227-284 27-80 (125)
128 PF14451 Ub-Mut7C: Mut7-C ubiq 29.6 42 0.0009 26.9 2.1 28 50-77 47-74 (81)
129 MTH00023 COX2 cytochrome c oxi 29.0 2.1E+02 0.0047 28.0 7.4 78 452-561 149-227 (240)
130 PRK15249 fimbrial chaperone pr 28.7 2.6E+02 0.0056 27.6 8.0 18 64-81 86-103 (253)
131 MTH00139 COX2 cytochrome c oxi 28.6 2E+02 0.0043 27.9 7.1 78 452-561 138-216 (226)
132 PF14326 DUF4384: Domain of un 28.5 3E+02 0.0064 21.8 8.2 15 221-235 3-17 (83)
133 PF14344 DUF4397: Domain of un 28.3 3.7E+02 0.0079 22.7 11.5 37 247-283 45-83 (122)
134 PF14392 zf-CCHC_4: Zinc knuck 28.2 76 0.0016 22.5 3.1 40 511-550 5-45 (49)
135 PF11614 FixG_C: IG-like fold 27.8 1.7E+02 0.0036 24.9 5.8 50 226-284 34-85 (118)
136 PTZ00047 cytochrome c oxidase 27.5 2.8E+02 0.006 25.4 7.2 62 218-300 74-135 (162)
137 MTH00139 COX2 cytochrome c oxi 27.2 5.7E+02 0.012 24.7 11.3 74 64-152 140-215 (226)
138 PRK15211 fimbrial chaperone pr 26.0 1.8E+02 0.0039 28.2 6.3 19 63-81 74-92 (229)
139 MTH00117 COX2 cytochrome c oxi 26.0 2.5E+02 0.0054 27.3 7.2 62 218-300 141-202 (227)
140 PF10989 DUF2808: Protein of u 25.9 70 0.0015 28.6 3.2 27 519-545 98-128 (146)
141 smart00758 PA14 domain in bact 25.5 4E+02 0.0086 22.9 8.0 61 219-284 52-113 (136)
142 PRK10525 cytochrome o ubiquino 23.4 1.6E+02 0.0034 30.2 5.5 62 218-300 152-213 (315)
143 MTH00154 COX2 cytochrome c oxi 23.2 2.9E+02 0.0063 26.8 7.1 78 452-561 138-216 (227)
144 PF14478 DUF4430: Domain of un 22.8 58 0.0013 24.8 1.8 27 50-76 38-67 (68)
145 TIGR03396 PC_PLC phospholipase 22.6 6.6E+02 0.014 28.8 10.6 66 62-136 592-660 (690)
146 MTH00076 COX2 cytochrome c oxi 22.4 2.5E+02 0.0054 27.3 6.5 61 218-299 141-201 (228)
147 PRK11372 lysozyme inhibitor; P 22.2 2.5E+02 0.0054 23.8 5.6 18 12-29 3-20 (109)
148 MTH00027 COX2 cytochrome c oxi 22.2 2.6E+02 0.0056 27.8 6.6 78 452-561 172-250 (262)
149 MTH00185 COX2 cytochrome c oxi 22.1 3.9E+02 0.0085 26.0 7.8 77 452-560 138-215 (230)
150 PF13721 SecD-TM1: SecD export 20.6 59 0.0013 27.2 1.5 76 5-82 3-80 (101)
151 PF15284 PAGK: Phage-encoded v 20.5 68 0.0015 23.9 1.6 27 8-34 3-29 (61)
152 PF02102 Peptidase_M35: Deuter 20.2 34 0.00074 35.6 0.0 45 85-134 77-121 (359)
153 PRK09918 putative fimbrial cha 20.2 4.1E+02 0.0089 25.8 7.5 67 11-79 4-91 (230)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=7.3e-106 Score=873.71 Aligned_cols=538 Identities=68% Similarity=1.218 Sum_probs=440.0
Q ss_pred ceeEEEEEEEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCcccc
Q 008090 31 GITRHYTFNIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQC 110 (578)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~ 110 (578)
|++|+|+|+|++..+++||+++.+|+|||++|||+|++++||+|+|+|+|.|+.+++|||||+++..++|+||+|++|||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~ 80 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQC 80 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEEEcCCCCceeeecCcchhcccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHHHHHHHHhcC
Q 008090 111 PIQTGQSYTYNFTITGQRGTLLWHAHISWLRSTLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEAIISQALQTG 190 (578)
Q Consensus 111 ~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g 190 (578)
+|+||++++|+|++++++||||||||...+++||+|+|||+++.+.+.++...|+|++|+++||++.+..+++......+
T Consensus 81 pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLRATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred CcCCCCeEEEEEEecCCCeeEEEecCchhhhccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 99999999999998668999999999988889999999999987656666677899999999999998888776655555
Q ss_pred CCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeC
Q 008090 191 AGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLIT 270 (578)
Q Consensus 191 ~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~ 270 (578)
..+.+++.++|||+.+++++|+....+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|+.++++.|+
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~ 240 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIG 240 (539)
T ss_pred CCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEec
Confidence 55557799999999988888988778899999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCcccccccccc
Q 008090 271 PGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDTSFAVNFTRK 350 (578)
Q Consensus 271 pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 350 (578)
+||||||+|++++++ |+|+|++....++...+......|||+|.++.. ...+.. +..+..+++.....+...
T Consensus 241 ~GqRydVlv~a~~~~--g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~-----~~~p~~-~~~~~~~~~~~~~~~~~~ 312 (539)
T TIGR03389 241 PGQTTNVLLTADQSP--GRYFMAARPYMDAPGAFDNTTTTAILQYKGTSN-----SAKPIL-PTLPAYNDTAAATNFSNK 312 (539)
T ss_pred CCCEEEEEEECCCCC--ceEEEEEeccccCccCCCCcceEEEEEECCCCC-----CCCCCC-CCCCCCCchhhhhHHHhh
Confidence 999999999999866 999999987544432234567899999988543 111111 222223332211111122
Q ss_pred cccccCCCCCCCCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhhhcCCCCCcccCCCC
Q 008090 351 FRSLASVKYPANVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYFFGQNNGVYTTDFP 430 (578)
Q Consensus 351 l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~~~~ 430 (578)
++.+..+.+|..+|...++++.+.+.+....... ..+...++..+.|++|+++|..|..|+|++.+.+++ |.+..+++
T Consensus 313 l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~-~~~~~~~~ 390 (539)
T TIGR03389 313 LRSLNSAQYPANVPVTIDRRLFFTIGLGLDPCPN-NTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGIS-GVFTTDFP 390 (539)
T ss_pred cccccccCCCCCCCCCCCeEEEEEeecccccCcc-cccccCCCcEEEEEECCcccCCCCcchhhhhhcccC-CccccCCc
Confidence 3333333334444545677666665543221100 011122455788999999999999998888776654 66666777
Q ss_pred CCCCCCCCCCCCC-CCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCC
Q 008090 431 VKPPMPFNYTGTP-PNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNL 509 (578)
Q Consensus 431 ~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~ 509 (578)
..+|..|++++.. +.+...+.+++++.++.|++|||+|+|.+......||||||||+||||++|.|.|+.......+|+
T Consensus 391 ~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl 470 (539)
T TIGR03389 391 ANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNL 470 (539)
T ss_pred cCCCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCcccccc
Confidence 7888888766643 112223457789999999999999999643234599999999999999999999986554457899
Q ss_pred CCCCcceeeeeCCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEecCCCCCCCCCCCCCCCCCC
Q 008090 510 VDPMERNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQNGAQPNQTLPPPPSDLPKC 578 (578)
Q Consensus 510 ~~p~~rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 578 (578)
.+|++|||+.||++||++|||++||||.|+|||||+||+..||+.+|.+.++.+..+.++++|++||+|
T Consensus 471 ~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 471 VDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred CCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 999999999999999999999999999999999999999999999999998888889999999999999
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=8.6e-105 Score=856.95 Aligned_cols=536 Identities=28% Similarity=0.457 Sum_probs=431.1
Q ss_pred HHHHHHHHHHHhccccc--cceeEEEEEEEEEEeeecCc--eeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeE
Q 008090 13 SVLLLGLCFLALLPEFA--AGITRHYTFNIKYHNVTRLC--HTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTI 88 (578)
Q Consensus 13 ~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~g--~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~si 88 (578)
+++|+|..+|.++.+++ .+++|+|+|+|++..+++|| ..+.+++|||++|||+|++++||+|+|+|+|.++++|+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttI 84 (596)
T PLN00044 5 LFLLLLAAALALAPAPAGAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLL 84 (596)
T ss_pred HHHHHHHHHHhcCCCccccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccE
Confidence 44555555666665544 56889999999999999999 456899999999999999999999999999999999999
Q ss_pred EEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCcchhc-ccceeeEEEeCCCCCCCCCCCCC-Cc
Q 008090 89 HWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLR-STLYGPIIILPKRNESYPFQKPH-KE 166 (578)
Q Consensus 89 H~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~p~~~~~-~e 166 (578)
||||++|..++|+||+++ +||||+||++|+|+|++++++||||||+|...|+ +||+|+|||++++..+.|+..++ +|
T Consensus 85 HWHGl~q~~t~w~DGv~~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e 163 (596)
T PLN00044 85 TWHGVQQRKSAWQDGVGG-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGD 163 (596)
T ss_pred EECCccCCCCccccCCCC-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccc
Confidence 999999999999999988 9999999999999999877899999999999988 89999999999876666665444 79
Q ss_pred EeEEeeecccCChHHHHHHHHhcCCCCCCCceEEEcCccCCCcccC----CCCeeEEEEeCCcEEEEEEEecCCCCeEEE
Q 008090 167 IPILFGEWFNVDPEAIISQALQTGAGPNVSDAYTINGLPGPLYNCS----SKDTYKLKVKPGKTYLLRLINAALNDELFF 242 (578)
Q Consensus 167 ~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~----~~~~~~l~v~~G~~~rlRliN~~~~~~~~~ 242 (578)
.+++++||++.+..++ ......|.....++..+|||+....++|+ +...+.++|++||+|||||||++....+.|
T Consensus 164 ~~i~l~DW~~~~~~~~-~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~f 242 (596)
T PLN00044 164 ITLFIADWYARDHRAL-RRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNF 242 (596)
T ss_pred eEEEecccccCCHHHH-HHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEE
Confidence 9999999999886654 33444444445679999999965334543 334568999999999999999999999999
Q ss_pred EEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEee-cCCCCCCCCCcceEEEEEEeCCCCC
Q 008090 243 SIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARP-YFSGMGTIDNSTTAGILEYKHPSNH 321 (578)
Q Consensus 243 ~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~-~~~~~~~~~~~~~~ail~y~~~~~~ 321 (578)
+|+||+|+|||+||.+++|+.+|.|.|++||||||+|++++++ +++|||++.. +..+. .+++....|||+|.++..
T Consensus 243 sIdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~-~~~Y~i~a~~~~~~~~-~~~~~~~~AIl~Y~~~~~- 319 (596)
T PLN00044 243 RIQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNA-STDYYVVASARFVDAA-VVDKLTGVAILHYSNSQG- 319 (596)
T ss_pred EECCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCC-CCceEEEEecccccCc-cccCcceeEEEEECCCCC-
Confidence 9999999999999999999999999999999999999999874 2589999864 22322 246678899999987533
Q ss_pred CcCccccCCCCCCCCC-CCCcccccccccccccccCCCCCCCCCcccceEEEEEecCCC-CCCCCCCcccCCCCCeeEee
Q 008090 322 SISSKKLQLYKPTLPS-INDTSFAVNFTRKFRSLASVKYPANVPQIVDRKFFFTVGLGS-NPCPKNTTCQGPNGTKFSAS 399 (578)
Q Consensus 322 ~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~ 399 (578)
..+.+ . |..+. .+++....++...++.+...+.++..|+..+....+++.... ..+.....| .+++.|+
T Consensus 320 ---~~~~~-~-P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~s 390 (596)
T PLN00044 320 ---PASGP-L-PDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELI----DGKLRAT 390 (596)
T ss_pred ---CCCCC-C-CCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeecccccccc----CCeEEEE
Confidence 11111 2 44443 555544433434455443333333444444444344332111 011000111 2378999
Q ss_pred ecceeeecCcchhhhhhhcCCCCCcccCCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCC
Q 008090 400 VNNVSFVLPSTAILQSYFFGQNNGVYTTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESH 479 (578)
Q Consensus 400 in~~s~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~H 479 (578)
|||++|+.|+.|+|.+++++++ |++..++|+.||... ....+.++.+++|++|||+|+|.. ...|
T Consensus 391 ~Nnvsf~~p~~p~L~a~~~~~~-gv~~~~fp~~pp~~~-----------~~~~t~v~~~~~n~~VeiV~qn~~---~~~H 455 (596)
T PLN00044 391 LNEISYIAPSTPLMLAQIFNVP-GVFKLDFPNHPMNRL-----------PKLDTSIINGTYKGFMEIIFQNNA---TNVQ 455 (596)
T ss_pred ECcccCCCCCCcchhhhhccCC-CcccCCCCCCCCccc-----------cccCceEEEcCCCCEEEEEEeCCC---CCCC
Confidence 9999999999999988887776 888888888877311 233688899999999999999953 4699
Q ss_pred CccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEe
Q 008090 480 PLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 480 P~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
|||||||+|+||+.|.|.|++. ....+|+.||++||||.|+++||++|||++||||.|+|||||+.|+..||..+|.|.
T Consensus 456 P~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~ 534 (596)
T PLN00044 456 SYHLDGYAFFVVGMDYGLWTDN-SRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVV 534 (596)
T ss_pred CeeEcCccEEEEeecCCCCCCC-cccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEe
Confidence 9999999999999999999975 356799999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC-CCCCCCCCCCCCCC
Q 008090 560 NGAQP-NQTLPPPPSDLPKC 578 (578)
Q Consensus 560 ~~~~~-~~~~~~~p~~~~~c 578 (578)
++.+. .+++++||+++|.|
T Consensus 535 ~~~~~~~~~~~~pP~~~~~C 554 (596)
T PLN00044 535 NPEDNSNKTVLPIPDNAIFC 554 (596)
T ss_pred cCCCCccccccCCCcccCcc
Confidence 99876 88999999999999
No 3
>PLN02991 oxidoreductase
Probab=100.00 E-value=8.5e-102 Score=829.69 Aligned_cols=496 Identities=26% Similarity=0.446 Sum_probs=401.1
Q ss_pred cccceeEEEEEEEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCc
Q 008090 28 FAAGITRHYTFNIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYV 107 (578)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~ 107 (578)
.+.|++++|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+++|+|||||+++...+|+||+++
T Consensus 23 ~~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~- 101 (543)
T PLN02991 23 AAEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYG- 101 (543)
T ss_pred hccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCC-
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccCCCCeEEEEEEEcCCCCceeeecCcchhc-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHHHHHHH
Q 008090 108 TQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLR-STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEAIISQA 186 (578)
Q Consensus 108 ~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~~~~~~ 186 (578)
+||+|+||++|+|+|++++++||||||+|...++ +||+|+|||+++...+.|+..+++|++++++||++++...+...
T Consensus 102 tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~- 180 (543)
T PLN02991 102 TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQ- 180 (543)
T ss_pred CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHH-
Confidence 9999999999999999866899999999998888 79999999998866666666678899999999999887665433
Q ss_pred HhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecE
Q 008090 187 LQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDK 266 (578)
Q Consensus 187 ~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~ 266 (578)
...+.....++.+||||+.. .+.++|++|++|||||||+|....+.|+|+||+|+|||+||.+++|..+++
T Consensus 181 ~~~~~~~~~~d~~liNG~~~---------~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~ 251 (543)
T PLN02991 181 LDNGGKLPLPDGILINGRGS---------GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSS 251 (543)
T ss_pred hhcCCCCCCCCEEEEccCCC---------CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeE
Confidence 33444445789999999953 257999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCcc--cc
Q 008090 267 LLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDTS--FA 344 (578)
Q Consensus 267 v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~ 344 (578)
+.|++||||||+|++++++ |+|||++...... ......|||+|.++... ... .. |..+...+.. ..
T Consensus 252 l~i~~GQRydvlv~a~~~~--~~y~i~~~~~~~~----~~~~~~AIl~Y~g~~~~----~~~-~~-p~~p~~~~~~~~~~ 319 (543)
T PLN02991 252 LDVHVGQSYSVLITADQPA--KDYYIVVSSRFTS----KILITTGVLHYSNSAGP----VSG-PI-PDGPIQLSWSFDQA 319 (543)
T ss_pred EEEcCCcEEEEEEECCCCC--CcEEEEEeeccCC----CCcceEEEEEeCCCCCC----CCC-CC-CCCCccccccccch
Confidence 9999999999999999986 9999998863321 33567899999886430 000 01 2211111110 00
Q ss_pred cccccccccccCCCCCCCCCccc--------ceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhh
Q 008090 345 VNFTRKFRSLASVKYPANVPQIV--------DRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSY 416 (578)
Q Consensus 345 ~~~~~~l~~l~~~~~p~~~p~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~ 416 (578)
......+.+ ..+...|... ++.+.+...+.. ..+++.|++||.+|..|+.|+|.++
T Consensus 320 ~~~~~~l~p----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~------------~~g~~~~~iN~~s~~~p~~p~L~~~ 383 (543)
T PLN02991 320 RAIKTNLTA----SGPRPNPQGSYHYGKINITRTIRLANSAGN------------IEGKQRYAVNSASFYPADTPLKLAD 383 (543)
T ss_pred hhhhhcccC----CCCCCCCCccccccccccceeEEEeecccc------------cCceEEEEECCCccCCCCCChhhhh
Confidence 011112221 1122222221 111222211110 1236789999999999999999888
Q ss_pred hcCCCCCcccCC-CCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecC
Q 008090 417 FFGQNNGVYTTD-FPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGF 495 (578)
Q Consensus 417 ~~~~~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~ 495 (578)
+++++ |.|..+ ++..++.. .....+.++.++.|++|||+|+|.. ...||||||||+||||++|.
T Consensus 384 ~~~~~-g~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~ 448 (543)
T PLN02991 384 YFKIA-GVYNPGSIPDQPTNG-----------AIFPVTSVMQTDYKAFVEIVFENWE---DIVQTWHLDGYSFYVVGMEL 448 (543)
T ss_pred hhccc-CccccccccccCCCC-----------ccccCCcEEEcCCCCEEEEEEeCCC---CCCCCeeeCCcceEEEEeCC
Confidence 87665 777654 44444321 1123467889999999999999954 36999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEecCCCCCCCCCCCCCCC
Q 008090 496 GNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQNGAQPNQTLPPPPSDL 575 (578)
Q Consensus 496 g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~ 575 (578)
|.|++. ....+|+.+|++|||+.||++||++|||++||||.|+|||||..|+..||..++.|.++.++.+.+++||.++
T Consensus 449 G~f~~~-~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~ 527 (543)
T PLN02991 449 GKWSAA-SRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNA 527 (543)
T ss_pred CCCCcc-cccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCccc
Confidence 999876 4567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 008090 576 PKC 578 (578)
Q Consensus 576 ~~c 578 (578)
|+|
T Consensus 528 ~~C 530 (543)
T PLN02991 528 LLC 530 (543)
T ss_pred Ccc
Confidence 999
No 4
>PLN02835 oxidoreductase
Probab=100.00 E-value=4e-101 Score=828.89 Aligned_cols=499 Identities=25% Similarity=0.436 Sum_probs=394.0
Q ss_pred cccceeEEEEEEEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCc
Q 008090 28 FAAGITRHYTFNIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYV 107 (578)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~ 107 (578)
.+.|++|+|+|+|++..++++|+++.+|+|||++|||+|++++||+|+|+|+|+|+++|+|||||+++..++|+||+++
T Consensus 24 ~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~- 102 (539)
T PLN02835 24 NGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLG- 102 (539)
T ss_pred hccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCcc-
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCeEEEEEEEcCCCCceeeecCcchhc-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHHHHHHH
Q 008090 108 TQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLR-STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEAIISQA 186 (578)
Q Consensus 108 ~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~~~~~~ 186 (578)
+||+|+||++|+|+|++++++||||||+|...|+ +||+|+|||++++..+.+++.+|+|++++++||++.+..++...
T Consensus 103 tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~- 181 (539)
T PLN02835 103 TNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQR- 181 (539)
T ss_pred CcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHHH-
Confidence 9999999999999999867899999999998888 89999999987655555666779999999999999987665333
Q ss_pred HhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecE
Q 008090 187 LQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDK 266 (578)
Q Consensus 187 ~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~ 266 (578)
...+.....++.+||||+.. +.++|++||+|||||||+|....+.|+|+||+|+||++||++++|..+++
T Consensus 182 ~~~g~~~~~~d~~liNG~~~----------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~ 251 (539)
T PLN02835 182 LDSGKVLPFPDGVLINGQTQ----------STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDS 251 (539)
T ss_pred hhcCCCCCCCceEEEccccC----------ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCCceeeE
Confidence 33444445679999999964 56899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCC---Cccc
Q 008090 267 LLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSIN---DTSF 343 (578)
Q Consensus 267 v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~---~~~~ 343 (578)
+.|++||||||+|++++++ |+|+|++.....+ ......|+|+|.++... . .... |..+... +...
T Consensus 252 l~i~~GqRydvlv~~~~~~--g~y~i~a~~~~~~----~~~~~~ail~Y~~~~~~----~-~~~~-p~~p~~~~~~~~~~ 319 (539)
T PLN02835 252 LDVHVGQSVAVLVTLNQSP--KDYYIVASTRFTR----QILTATAVLHYSNSRTP----A-SGPL-PALPSGELHWSMRQ 319 (539)
T ss_pred EEECcCceEEEEEEcCCCC--CcEEEEEEccccC----CCcceEEEEEECCCCCC----C-CCCC-CCCCccccccccch
Confidence 9999999999999999875 9999998642221 23567899999875320 0 0011 2211110 0000
Q ss_pred ccccccccccccCCCCCCCC----CcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhhhcC
Q 008090 344 AVNFTRKFRSLASVKYPANV----PQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYFFG 419 (578)
Q Consensus 344 ~~~~~~~l~~l~~~~~p~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~ 419 (578)
.......+......+.+... ....++++.+..... ...++..|++||++|..|+.|+|.+.+++
T Consensus 320 ~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~------------~~~g~~~w~iN~~s~~~p~~P~L~~~~~~ 387 (539)
T PLN02835 320 ARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAP------------LINGKQRYAVNGVSYVNSDTPLKLADYFG 387 (539)
T ss_pred hhccccccCccccCCCCCccccccccCCCceEEEecccc------------ccCCeEEEEECCcccCCCCCChhhhhhhc
Confidence 00000011111111111000 011133332322110 01235689999999999999988776665
Q ss_pred CCCCcccCCC-CCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCC
Q 008090 420 QNNGVYTTDF-PVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNY 498 (578)
Q Consensus 420 ~~~g~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~ 498 (578)
.+ |.++.+. ...++ +.....++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|
T Consensus 388 ~~-~~~~~~~~~~~~~-----------~~~~~~~t~~~~~~~~~~Veivi~N~~---~~~HP~HLHGh~F~Vlg~G~g~~ 452 (539)
T PLN02835 388 IP-GVFSVNSIQSLPS-----------GGPAFVATSVMQTSLHDFLEVVFQNNE---KTMQSWHLDGYDFWVVGYGSGQW 452 (539)
T ss_pred CC-CccccCccccCCC-----------CCccccCCeEEEcCCCCEEEEEEECCC---CCCCCCCCCCccEEEEeccCCCC
Confidence 43 5554321 11111 111345688999999999999999964 46999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEecCCCCCCCCCCCCCCCCCC
Q 008090 499 DPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQNGAQPNQTLPPPPSDLPKC 578 (578)
Q Consensus 499 ~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 578 (578)
++.. ...+|+.+|++||||.|+++||++|||+|||||.|+|||||++|+..||+.+|+|+++.+..+.+++||+++|.|
T Consensus 453 ~~~~-~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~C 531 (539)
T PLN02835 453 TPAK-RSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLC 531 (539)
T ss_pred Cccc-ccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCcccccc
Confidence 8643 445788999999999999999999999999999999999999999999999999999999999999999999999
No 5
>PLN02792 oxidoreductase
Probab=100.00 E-value=3.1e-101 Score=826.74 Aligned_cols=507 Identities=25% Similarity=0.415 Sum_probs=409.0
Q ss_pred cceeEEEEEEEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccc
Q 008090 30 AGITRHYTFNIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQ 109 (578)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q 109 (578)
+.++++|+|+|++..++++|+.+.+++||||+|||+|++++||+|+|+|+|+|+++++|||||+++..++|+||+++ +|
T Consensus 13 ~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~-tq 91 (536)
T PLN02792 13 ADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYG-TT 91 (536)
T ss_pred cCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCC-Cc
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999988 89
Q ss_pred cccCCCCeEEEEEEEcCCCCceeeecCcchhc-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHHHHHHHHh
Q 008090 110 CPIQTGQSYTYNFTITGQRGTLLWHAHISWLR-STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEAIISQALQ 188 (578)
Q Consensus 110 ~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~~~~~~~~ 188 (578)
|||+||++|+|+|++++++||||||+|...|+ +||+|+|||.+++..+.+++.+++|++++++||++.+...+ .....
T Consensus 92 cPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~-~~~~~ 170 (536)
T PLN02792 92 CPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTL-KKILD 170 (536)
T ss_pred CccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHH-HHHhh
Confidence 99999999999999867899999999999887 89999999988655555666678999999999999886654 33333
Q ss_pred cCCC-CCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEE
Q 008090 189 TGAG-PNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKL 267 (578)
Q Consensus 189 ~g~~-~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v 267 (578)
.+.. +..++.+||||+... ..+.++|++||+|||||||+|....+.|+|+||+|+|||+||++++|..+++|
T Consensus 171 ~g~~~~~~~d~~liNG~~~~-------~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l 243 (536)
T PLN02792 171 GGRKLPLMPDGVMINGQGVS-------YVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSL 243 (536)
T ss_pred ccCcCCCCCCEEEEeccCCC-------CcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEE
Confidence 3332 337799999999642 23679999999999999999999999999999999999999999999999999
Q ss_pred EeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCccccccc
Q 008090 268 LITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDTSFAVNF 347 (578)
Q Consensus 268 ~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 347 (578)
.|+|||||||+|++++++ |+|+|++.+...+ .+....|||+|.++... . +.. |..|..+++.....+
T Consensus 244 ~i~~GqRydVlV~a~~~~--g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~---~---~~~-p~~p~~~~~~~~~~~ 310 (536)
T PLN02792 244 DIHVGQTYSVLVTMDQPP--QNYSIVVSTRFIA----AKVLVSSTLHYSNSKGH---K---IIH-ARQPDPDDLEWSIKQ 310 (536)
T ss_pred EEccCceEEEEEEcCCCC--ceEEEEEEeccCC----CCCceEEEEEECCCCCC---C---CCC-CCCCCcCCccccccc
Confidence 999999999999999876 9999999864322 23577899999875431 0 111 333344444433322
Q ss_pred ccccccccCCCCCCCCCcccceEEEEEecCCC-CCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhhhcCCCCCccc
Q 008090 348 TRKFRSLASVKYPANVPQIVDRKFFFTVGLGS-NPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYFFGQNNGVYT 426 (578)
Q Consensus 348 ~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~~ 426 (578)
...++.+..++.+..+|+..++...+..+... ..+. . ...+.++.|++||+||+.|+.|+|.+++++++ |++.
T Consensus 311 ~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~-g~~~ 384 (536)
T PLN02792 311 AQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILESS-A----ALVKRKQRYAINGVSFVPSDTPLKLADHFKIK-GVFK 384 (536)
T ss_pred hhhhhhccCCCCCCCCCCcccccceeccceeEEeccc-c----cccCceeEEEECCcccCCCCCchhhhhhhccC-CCcC
Confidence 22223332223344445433332222211110 0000 0 01123678999999999999999988877766 7765
Q ss_pred CC-CCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCC
Q 008090 427 TD-FPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLM 505 (578)
Q Consensus 427 ~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~ 505 (578)
.+ ++..||..++ ....+.++.++.|++|||+|+|.. ...||||||||+||||+.|.|.|++. ...
T Consensus 385 ~~~~~~~p~~~~~----------~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~~~~~-~~~ 450 (536)
T PLN02792 385 VGSIPDKPRRGGG----------MRLDTSVMGAHHNAFLEIIFQNRE---KIVQSYHLDGYNFWVVGINKGIWSRA-SRR 450 (536)
T ss_pred cccCccCCcccCC----------CccCceEEEcCCCCEEEEEEECCC---CCCCCeeeCCCceEEEeecCCCCCcc-ccc
Confidence 53 6766664221 234578899999999999999953 36899999999999999999999874 356
Q ss_pred CCCCCCCCcceeeeeCCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEecCCCCCCCCCCCCCCCCCC
Q 008090 506 NFNLVDPMERNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQNGAQPNQTLPPPPSDLPKC 578 (578)
Q Consensus 506 ~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 578 (578)
.+|+.+|++||||.|+++||++|||+|||||.|+||||+..|+..||+.+|.|.++.++.+++++||+++|.|
T Consensus 451 ~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~C 523 (536)
T PLN02792 451 EYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLC 523 (536)
T ss_pred ccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCcc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999
No 6
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=1.3e-100 Score=825.82 Aligned_cols=506 Identities=26% Similarity=0.454 Sum_probs=400.9
Q ss_pred ccceeEEEEEEEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCcc
Q 008090 29 AAGITRHYTFNIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVT 108 (578)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~ 108 (578)
+.+++++|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|.|+++|+|||||+++..++|+||+|+ |
T Consensus 23 ~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~-T 101 (552)
T PLN02354 23 AEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPG-T 101 (552)
T ss_pred ccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcC-C
Confidence 346789999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ccccCCCCeEEEEEEEcCCCCceeeecCcchhc-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHHHHHHHH
Q 008090 109 QCPIQTGQSYTYNFTITGQRGTLLWHAHISWLR-STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEAIISQAL 187 (578)
Q Consensus 109 q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~~~~~~~ 187 (578)
||||+||++|+|+|++.+++||||||+|...|+ +||+|+|||+++...+.++..+++|++++++||++++...+. ...
T Consensus 102 QcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~-~~~ 180 (552)
T PLN02354 102 NCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALK-KFL 180 (552)
T ss_pred cCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHH-HHH
Confidence 999999999999999766899999999999998 899999999988655666656789999999999999866643 334
Q ss_pred hcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEE
Q 008090 188 QTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKL 267 (578)
Q Consensus 188 ~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v 267 (578)
..+.....++.+||||+....+. ...+.++|++||+|||||||+|....+.|+|+||+|+|||+||++++|..+++|
T Consensus 181 ~~g~~~~~~d~~liNG~~~~~~~---~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~l 257 (552)
T PLN02354 181 DSGRTLGRPDGVLINGKSGKGDG---KDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSL 257 (552)
T ss_pred hcCCCCCCCCeEEEeCCcCCCCC---CCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCcceeEE
Confidence 44443445799999999653221 235789999999999999999999999999999999999999999999999999
Q ss_pred EeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCccccc--
Q 008090 268 LITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDTSFAV-- 345 (578)
Q Consensus 268 ~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-- 345 (578)
.|++||||||+|++++++ |+|+|++...... ......|||+|.++... +.+.. |..+. ++....
T Consensus 258 ~i~~GqRydVlv~a~~~~--g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~-----~~~~~-p~~~~--~~~~~~~~ 323 (552)
T PLN02354 258 DVHVGQCFSVLVTANQAP--KDYYMVASTRFLK----KVLTTTGIIRYEGGKGP-----ASPEL-PEAPV--GWAWSLNQ 323 (552)
T ss_pred EEccCceEEEEEECCCCC--CcEEEEEeccccC----CCccEEEEEEECCCCCC-----CCCCC-CCCCc--ccccchhh
Confidence 999999999999999876 9999998742221 34577899999875430 01111 22111 110000
Q ss_pred --ccccccccccCCCCCCCC----CcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhhhcC
Q 008090 346 --NFTRKFRSLASVKYPANV----PQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYFFG 419 (578)
Q Consensus 346 --~~~~~l~~l~~~~~p~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~ 419 (578)
.+...+.+....+.+... ....++.+.+..... . ..+.+.|++||++|+.|+.|+|.+.+++
T Consensus 324 ~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~g~~~~~iNn~s~~~p~~P~L~~~~~~ 391 (552)
T PLN02354 324 FRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSAS-----------K-VDGKLRYALNGVSHVDPETPLKLAEYFG 391 (552)
T ss_pred hhhhhhcccccccCCCCCCccccccccccceEEEecccc-----------c-CCceEEEEECCccCCCCCCChHHhhhhc
Confidence 000111111111111000 011223333322111 0 1235789999999999999998887765
Q ss_pred CCCCcccCC-CCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCC
Q 008090 420 QNNGVYTTD-FPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNY 498 (578)
Q Consensus 420 ~~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~ 498 (578)
+..|.++.+ ++..+|...+ ....++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|
T Consensus 392 ~~~g~~~~~~~~~~pp~~~~---------~~~~~~~v~~~~~~~~VeiVi~n~~---~~~HP~HLHGh~F~Vlg~G~G~~ 459 (552)
T PLN02354 392 VADKVFKYDTIKDNPPAKIT---------KIKIQPNVLNITFRTFVEIIFENHE---KSMQSWHLDGYSFFAVAVEPGTW 459 (552)
T ss_pred ccCCccccCccccCCccccC---------ccccCCeeEEcCCCCEEEEEEeCCC---CCCCCCcCCCccEEEEeecCCCC
Confidence 554665544 3444443211 1234568899999999999999953 46999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEecCCCCCCCCCCCCCCCCCC
Q 008090 499 DPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQNGAQPNQTLPPPPSDLPKC 578 (578)
Q Consensus 499 ~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 578 (578)
++.. ...+|+.+|++|||+.||++||++|||++||||.|+|||||..|+..||..+|.|.++.+..++++++|++.+.|
T Consensus 460 ~~~~-~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C 538 (552)
T PLN02354 460 TPEK-RKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLC 538 (552)
T ss_pred Cccc-cccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCcccccc
Confidence 8753 457899999999999999999999999999999999999999999999999999999888888888999999999
No 7
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.6e-100 Score=810.25 Aligned_cols=534 Identities=48% Similarity=0.853 Sum_probs=467.9
Q ss_pred HhccccccceeEEEEEEEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCC
Q 008090 23 ALLPEFAAGITRHYTFNIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWAD 102 (578)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~D 102 (578)
+++...|.++.+.|+|++++..+.++|.++.++++||++|||+|+|++||+|.|+|.|.++++++|||||+++..+.|+|
T Consensus 18 ~~~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~D 97 (563)
T KOG1263|consen 18 LVFFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQD 97 (563)
T ss_pred HHHHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCcccc
Confidence 34556688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCCeEEEEEEEcCCCCceeeecCcchhc-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccC-ChH
Q 008090 103 GPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLR-STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNV-DPE 180 (578)
Q Consensus 103 G~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~-~~~ 180 (578)
| +.+|||||+||++|+|+|+++++.||||||+|...++ +|++|+|||.++...+.|++.+++|++|+++||+.+ ...
T Consensus 98 G-~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~ 176 (563)
T KOG1263|consen 98 G-VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHK 176 (563)
T ss_pred C-CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHH
Confidence 9 8999999999999999999988999999999999999 799999999999888888888999999999999996 666
Q ss_pred HHHHHHHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCccc
Q 008090 181 AIISQALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVK 260 (578)
Q Consensus 181 ~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~ 260 (578)
.+.......+..+..+|..+|||+++..++| .+.++|++||+|||||+|+|....+.|+|+||+|+||++||.+++
T Consensus 177 ~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~----~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~ 252 (563)
T KOG1263|consen 177 NLKNFLDRTGALPNPSDGVLINGRSGFLYNC----TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTK 252 (563)
T ss_pred HHHHhhccCCCCCCCCCceEECCCCCcccCc----eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEe
Confidence 6655555555556568999999999888888 589999999999999999999999999999999999999999999
Q ss_pred ceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCC
Q 008090 261 PFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSIND 340 (578)
Q Consensus 261 P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~ 340 (578)
|..+++|.|.||||+||++++++++ ++|+|.+.++.++..........++++|.++.. ......+.. +.++..++
T Consensus 253 p~~~~~l~i~~GQ~~~vLvtadq~~--~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~--~~s~~~~~~-~~~~~~~~ 327 (563)
T KOG1263|consen 253 PFTTDSLDIHPGQTYSVLLTADQSP--GDYYIAASPYFDASNVPFNLTTTGILRYSGSTH--PASEKLPIY-PFLPPGND 327 (563)
T ss_pred eeeeceEEEcCCcEEEEEEeCCCCC--CcEEEEEEeeeccCCcceeeeEEEEEEEeCCcc--cCcccCccc-ccCCcccC
Confidence 9999999999999999999999987 799999998776532112678899999998432 111111222 44566667
Q ss_pred cccccccccccccccCCCCCCCCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcch-hhhhhhcC
Q 008090 341 TSFAVNFTRKFRSLASVKYPANVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTA-ILQSYFFG 419 (578)
Q Consensus 341 ~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~-~l~~~~~~ 419 (578)
+.....+.+.++.+.....++.+|+..++...++.+.+...++... ..+++..+++|++||+.|+.| ++..++..
T Consensus 328 ~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~siN~isf~~P~tp~~l~~~~~~ 403 (563)
T KOG1263|consen 328 TAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDN----KNNGKLRASINNISFVTPKTPSLLAAYFKN 403 (563)
T ss_pred chhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCC----CCCcEEEEEEcceEEECCCCchhhhhhhcc
Confidence 7777777778888877777888899888887777766655443211 356788899999999999986 56666666
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCC
Q 008090 420 QNNGVYTTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYD 499 (578)
Q Consensus 420 ~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~ 499 (578)
++ |.+..+++..|+..+++++ .+.++.++.+++++.||++|+|.+......||||||||+|+||+.|.|.|+
T Consensus 404 ~~-~~~~~d~p~~P~~~~~~~~-------~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~ 475 (563)
T KOG1263|consen 404 IP-GYFTNDFPDKPPIKFDYTG-------PTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWD 475 (563)
T ss_pred CC-ccccCccCCCCccccCCcc-------ccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccC
Confidence 55 7788889999987777665 567899999999999999999998777788999999999999999999999
Q ss_pred CCCCC-CCCCCCCCCcceeeeeCCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEecCCCCCCCCCCCCCCCCCC
Q 008090 500 PDKDL-MNFNLVDPMERNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQNGAQPNQTLPPPPSDLPKC 578 (578)
Q Consensus 500 ~~~~~-~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 578 (578)
+..+. ..+|+.+|+.||||.||||||++|||.|||||.|++|||+++|+..||..+|.|.++.++.+++.+||+|+++|
T Consensus 476 ~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~c 555 (563)
T KOG1263|consen 476 PAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKC 555 (563)
T ss_pred cCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccc
Confidence 95444 78999999999999999999999999999999999999999999999999999999999999999999999999
No 8
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=5.9e-100 Score=817.09 Aligned_cols=501 Identities=27% Similarity=0.461 Sum_probs=391.6
Q ss_pred cceeEEEEEEEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccc
Q 008090 30 AGITRHYTFNIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQ 109 (578)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q 109 (578)
.|++|+|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|+|+++|+|||||+++..++|+||+|+ +|
T Consensus 23 ~a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~g-tQ 101 (545)
T PLN02168 23 FAPIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRG-TN 101 (545)
T ss_pred cccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCC-Cc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cccCCCCeEEEEEEEcCCCCceeeecCcchhc-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHHHHHHHHh
Q 008090 110 CPIQTGQSYTYNFTITGQRGTLLWHAHISWLR-STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEAIISQALQ 188 (578)
Q Consensus 110 ~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~~~~~~~~ 188 (578)
|||+||++|+|+|++++++||||||+|...|+ +||+|+|||+++++.+.|++.+++|++++++||++.+...+. ....
T Consensus 102 cpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~-~~~~ 180 (545)
T PLN02168 102 CPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMR-ASLD 180 (545)
T ss_pred CCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHH-hhhh
Confidence 99999999999999866899999999999888 899999999998766666667789999999999998755433 2233
Q ss_pred cCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEE
Q 008090 189 TGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLL 268 (578)
Q Consensus 189 ~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~ 268 (578)
.+.....++.+||||+.. ..+.+++++||+|||||||+|....+.|+|+||+|+||++||.+++|+.+++|.
T Consensus 181 ~g~~~~~~d~~liNG~~~--------~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~ 252 (545)
T PLN02168 181 NGHSLPNPDGILFNGRGP--------EETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLD 252 (545)
T ss_pred cCCCCCCCCEEEEeccCC--------CcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEE
Confidence 333334679999999963 236899999999999999999999999999999999999999999999999999
Q ss_pred eCCCceEEEEEEcCCCCCC--CceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCcccccc
Q 008090 269 ITPGQTANVLLRTKPYFPN--ATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDTSFAVN 346 (578)
Q Consensus 269 l~pgeR~dv~v~~~~~~~~--g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 346 (578)
|++||||||+|++++++.| ++|+|++.....+ ......|||+|.++... ...+ . |..+..++......
T Consensus 253 i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~----~~~~~~ail~Y~~~~~~---~~~p--~-p~~p~~~~~~~~~~ 322 (545)
T PLN02168 253 IHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTD----AYLGGVALIRYPNSPLD---PVGP--L-PLAPALHDYFSSVE 322 (545)
T ss_pred EcCCceEEEEEEcCCCCCCCcceEEEEEEecccC----CCcceEEEEEECCCCCC---CCCC--C-CCCCcccccccccc
Confidence 9999999999999875443 4899999863322 23577899999875331 0001 1 22333333222111
Q ss_pred cccccccccCCCCCCCCCcc--------cceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhhhc
Q 008090 347 FTRKFRSLASVKYPANVPQI--------VDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYFF 418 (578)
Q Consensus 347 ~~~~l~~l~~~~~p~~~p~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~ 418 (578)
....++....+..+...|.. .++.+.+... . ....+...|++||++|..|+.|+|.+.++
T Consensus 323 ~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~--~----------~~~~g~~~~~iN~~s~~~p~~P~l~~~~~ 390 (545)
T PLN02168 323 QALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHND--V----------MLSSGKLRYTINGVSFVYPGTPLKLVDHF 390 (545)
T ss_pred hhhhhhhcCCCCCCCCCCcccccccccccceeEEeccc--c----------cccCceEEEEECCCccCCCCCchhhhhhc
Confidence 11111111111111122221 1122211110 0 00123578999999999999998876665
Q ss_pred CCCCCcccC-CCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCC
Q 008090 419 GQNNGVYTT-DFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGN 497 (578)
Q Consensus 419 ~~~~g~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~ 497 (578)
.++ +.+.. +++..+|. ......+.++.++.|++|||+|+|.. ...||||||||+||||++|.|.
T Consensus 391 ~~~-~~~~~~~~~~~p~~-----------~~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~g~g~ 455 (545)
T PLN02168 391 QLN-DTIIPGMFPVYPSN-----------KTPTLGTSVVDIHYKDFYHIVFQNPL---FSLESYHIDGYNFFVVGYGFGA 455 (545)
T ss_pred ccc-cccccCCCccCCCc-----------CccccCceEEEecCCCEEEEEEeCCC---CCCCCeeeCCCceEEEECCCCC
Confidence 543 33322 23443331 00122467889999999999999953 4699999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEecCCC------CCCCCCCC
Q 008090 498 YDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQNGAQ------PNQTLPPP 571 (578)
Q Consensus 498 ~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~------~~~~~~~~ 571 (578)
|++.. ...+|+.+|++|||+.||++||++|||+|||||.|+|||||++|++.||..+++|.++.. ..+++++|
T Consensus 456 ~~~~~-~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~ 534 (545)
T PLN02168 456 WSESK-KAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPI 534 (545)
T ss_pred CCccc-cccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccccCC
Confidence 98653 356899999999999999999999999999999999999999999999999998864433 36788999
Q ss_pred CCCCCCC
Q 008090 572 PSDLPKC 578 (578)
Q Consensus 572 p~~~~~c 578 (578)
|+++++|
T Consensus 535 P~~~~~c 541 (545)
T PLN02168 535 PGNVIRC 541 (545)
T ss_pred Chhhccc
Confidence 9999999
No 9
>PLN02604 oxidoreductase
Probab=100.00 E-value=6.4e-95 Score=789.35 Aligned_cols=524 Identities=32% Similarity=0.574 Sum_probs=397.8
Q ss_pred HHHHhccccccceeEEEEEEEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCC-CCceeEEEeeeeeccC
Q 008090 20 CFLALLPEFAAGITRHYTFNIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHV-SNNVTIHWHGVRQVTS 98 (578)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~ 98 (578)
+|+.++...+.+++|+|+|+|++..+++||+++.+|+|||++|||+|++++||+|+|+|+|.+ .++++|||||+++...
T Consensus 11 ~~~~~~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~ 90 (566)
T PLN02604 11 LFSVLNFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGT 90 (566)
T ss_pred HHHHHHhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCC
Confidence 344445556678999999999999999999999999999999999999999999999999998 5899999999999999
Q ss_pred CCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCcchhc-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccC
Q 008090 99 GWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLR-STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNV 177 (578)
Q Consensus 99 ~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~ 177 (578)
+|+||+++++||+|.||++++|+|++ .++||||||||...++ +||+|+|||+++.+...|+ .+|+|.+|+++||+++
T Consensus 91 ~~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~Dw~~~ 168 (566)
T PLN02604 91 PWFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILTDWYHK 168 (566)
T ss_pred ccccCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEeeccccC
Confidence 99999999999999999999999998 7999999999998888 8999999999886544455 4688999999999999
Q ss_pred ChHHHHHHHHhcC-CCCCCCceEEEcCccCCCcccCC-----------------CCeeEEEEeCCcEEEEEEEecCCCCe
Q 008090 178 DPEAIISQALQTG-AGPNVSDAYTINGLPGPLYNCSS-----------------KDTYKLKVKPGKTYLLRLINAALNDE 239 (578)
Q Consensus 178 ~~~~~~~~~~~~g-~~~~~~~~~liNG~~~~~~~~~~-----------------~~~~~l~v~~G~~~rlRliN~~~~~~ 239 (578)
...+.+....... .....++..+|||+.. +.|+. ...+.+++++|++|||||||+|+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~d~~liNG~G~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~ 246 (566)
T PLN02604 169 STYEQALGLSSIPFDWVGEPQSLLIQGKGR--YNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSA 246 (566)
T ss_pred CHHHHHHhhccCCCccCCCCCceEEcCCCC--CCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEeccccce
Confidence 8766544322111 1113568999999853 33421 13457899999999999999999999
Q ss_pred EEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCC
Q 008090 240 LFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPS 319 (578)
Q Consensus 240 ~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~ 319 (578)
+.|+|+||+|+|||+||.+++|++++.|.|++||||||+|++++.+ +++|||++.....+. +....+|||+|++..
T Consensus 247 ~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~-~~~y~ira~~~~~~~---~~~~~~aIL~Y~~~~ 322 (566)
T PLN02604 247 LSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDP-SRNYWVTTSVVSRNN---TTPPGLAIFNYYPNH 322 (566)
T ss_pred EEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCC-CCCEEEEEecccCCC---CCcceeEEEEECCCC
Confidence 9999999999999999999999999999999999999999998854 368999987543321 346779999998643
Q ss_pred CCCcCccccCCCCCCCCCCCCcccccccccccccccCCCCCCCCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEee
Q 008090 320 NHSISSKKLQLYKPTLPSINDTSFAVNFTRKFRSLASVKYPANVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSAS 399 (578)
Q Consensus 320 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 399 (578)
.. ..++...+..+.+++..........++.+.. .+...+...++++.+....+. .++.+.|+
T Consensus 323 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~------------~~~~~~w~ 384 (566)
T PLN02604 323 PR----RSPPTVPPSGPLWNDVEPRLNQSLAIKARHG--YIHPPPLTSDRVIVLLNTQNE------------VNGYRRWS 384 (566)
T ss_pred CC----CCCCCCCCCCCcccccchhhcchhccccccc--CcCCCCCCCCeEEEEeccccc------------cCCeEEEE
Confidence 20 0011111111222222111111111111111 111123344555554322211 12356899
Q ss_pred ecceeeecCcchhhhhhhcCCCCCcccCCCCCCCCCCCC---CCCC-CCCCCccCCCeeeEeecCCCEEEEEEeeCCCC-
Q 008090 400 VNNVSFVLPSTAILQSYFFGQNNGVYTTDFPVKPPMPFN---YTGT-PPNNTNVSNGTRTVLLPFNTSVELVMQDTSIL- 474 (578)
Q Consensus 400 in~~s~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~---~~~~-~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~- 474 (578)
+|+++|..|..|.|.+.+.... |.++.+. ++..+. ++.. ...+...+.+..++.++.|++||++|+|....
T Consensus 385 in~~~~~~p~~p~L~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~ 460 (566)
T PLN02604 385 VNNVSFNLPHTPYLIALKENLT-GAFDQTP---PPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMN 460 (566)
T ss_pred ECcccCCCCCCchhHhhhhcCC-CcccCCC---CCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCcccc
Confidence 9999999888888777665433 5543221 111111 1110 01112244567889999999999999996421
Q ss_pred --CCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccCceeeEEeeechhhhhccc
Q 008090 475 --GAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHTSWGL 552 (578)
Q Consensus 475 --~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H~d~GM 552 (578)
....||||||||+||||++|.|.|++......+|+.+|++|||+.|+++||++|||++||||.|+|||||+||+..||
T Consensus 461 ~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM 540 (566)
T PLN02604 461 ANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGM 540 (566)
T ss_pred CCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCC
Confidence 246899999999999999999999876555678999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCCC
Q 008090 553 RMAWIVQNGAQPNQTLPPPPSDLPKC 578 (578)
Q Consensus 553 ~~~~~V~~~~~~~~~~~~~p~~~~~c 578 (578)
+.+|.+. .+.++++|.++++|
T Consensus 541 ~~v~~e~-----~~~~~~~p~~~~~C 561 (566)
T PLN02604 541 GVVFEEG-----IERVGKLPSSIMGC 561 (566)
T ss_pred EEEEeeC-----hhhccCCCCCcCcc
Confidence 9999754 25677899999999
No 10
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=3.7e-94 Score=781.38 Aligned_cols=515 Identities=31% Similarity=0.567 Sum_probs=382.4
Q ss_pred ccceeEEEEEEEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCC-CceeEEEeeeeeccCCCCCCCCCc
Q 008090 29 AAGITRHYTFNIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVS-NNVTIHWHGVRQVTSGWADGPAYV 107 (578)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DG~~~~ 107 (578)
+.+++|+|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|.|+ .+++|||||+++..++|+||+|++
T Consensus 19 ~~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gv 98 (574)
T PLN02191 19 ASAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGV 98 (574)
T ss_pred hccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCcc
Confidence 3468999999999999999999999999999999999999999999999999997 789999999999999999999999
Q ss_pred cccccCCCCeEEEEEEEcCCCCceeeecCcchhc-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHHHHHHH
Q 008090 108 TQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLR-STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEAIISQA 186 (578)
Q Consensus 108 ~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~~~~~~ 186 (578)
+||+|+||++|+|+|++ .++||||||||...|+ +||+|+|||+++.+...++ .+|+|++|+++||++..........
T Consensus 99 tq~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~ 176 (574)
T PLN02191 99 TQCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHESIPSQELGL 176 (574)
T ss_pred ccCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCChHHHHHhh
Confidence 99999999999999998 7899999999999888 8999999998765433232 4689999999999998754332221
Q ss_pred HhcC-CCCCCCceEEEcCccCCCcccC-------------------C-CCeeEEEEeCCcEEEEEEEecCCCCeEEEEEc
Q 008090 187 LQTG-AGPNVSDAYTINGLPGPLYNCS-------------------S-KDTYKLKVKPGKTYLLRLINAALNDELFFSIA 245 (578)
Q Consensus 187 ~~~g-~~~~~~~~~liNG~~~~~~~~~-------------------~-~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~ 245 (578)
.... .....++.+||||+.. +.|+ + .....++|++||+|||||||+|+...+.|+|+
T Consensus 177 ~~~~~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~id 254 (574)
T PLN02191 177 SSKPMRWIGEAQSILINGRGQ--FNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQ 254 (574)
T ss_pred ccCCCCcCCCCCceEECCCCC--CCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEEC
Confidence 1111 1123568999999853 3342 1 12236999999999999999999999999999
Q ss_pred CceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCc
Q 008090 246 NHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISS 325 (578)
Q Consensus 246 gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~ 325 (578)
||+|+|||+||.+++|+.+++|.|++||||||+|++++++ +++|+||+.....+. ......|||+|.+......
T Consensus 255 gH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~-~~~y~ira~~~~~~~---~~~~~~ail~Y~~~~~~~~-- 328 (574)
T PLN02191 255 GHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDP-SQNYYISVGVRGRKP---NTTQALTILNYVTAPASKL-- 328 (574)
T ss_pred CCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCC-CCCEEEEEEccccCC---CCCCceEEEEECCCCCCCC--
Confidence 9999999999999999999999999999999999999864 368999997533221 2223469999987543110
Q ss_pred cccCCCCCCCCCCCCcccccccccccccccCCCCCCCCCc-ccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeeccee
Q 008090 326 KKLQLYKPTLPSINDTSFAVNFTRKFRSLASVKYPANVPQ-IVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVS 404 (578)
Q Consensus 326 ~~~~~~~p~~~~~~~~~~~~~~~~~l~~l~~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s 404 (578)
+....|..+.+++....... ....+.....+ ..|. ..+..+.+.... . ......|++|+++
T Consensus 329 --p~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~-~~p~~~~~~~~~~~~~~--~-----------~~~~~~~~~n~~s 390 (574)
T PLN02191 329 --PSSPPPVTPRWDDFERSKNF--SKKIFSAMGSP-SPPKKYRKRLILLNTQN--L-----------IDGYTKWAINNVS 390 (574)
T ss_pred --CCCCCCCCCcccccchhhcc--cccccccccCC-CCCCcccceEEEecccc--e-----------eCCeEEEEECccc
Confidence 00000122223222111100 11111110011 1121 224444332111 0 1124579999999
Q ss_pred eecCcchhhhhhhcCCCCCcccCCCCCCC-CCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCC---CCCCCC
Q 008090 405 FVLPSTAILQSYFFGQNNGVYTTDFPVKP-PMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSIL---GAESHP 480 (578)
Q Consensus 405 ~~~p~~~~l~~~~~~~~~g~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~---~~~~HP 480 (578)
|..|..|.|.+.+.+.. +.+..+.+... +..|+..+... ....+.++.++.++.|++|||+|+|.... ....||
T Consensus 391 ~~~p~~P~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP 468 (574)
T PLN02191 391 LVTPATPYLGSVKYNLK-LGFNRKSPPRSYRMDYDIMNPPP-FPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHP 468 (574)
T ss_pred CcCCCcchHHHHhhccC-cccccCCCcccccccccccCCCc-cccccccceeEEecCCCEEEEEEECCCcccCCCCCCCC
Confidence 99898887777655433 33333322211 11222111100 01123467789999999999999996411 257999
Q ss_pred ccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEec
Q 008090 481 LHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQN 560 (578)
Q Consensus 481 ~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~ 560 (578)
||||||+||||++|.|.|++......+|+.+|++|||+.||++||++|||++||||.|+|||||+||+..||+.+|...
T Consensus 469 ~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~e~- 547 (574)
T PLN02191 469 WHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFAEG- 547 (574)
T ss_pred EEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEecC-
Confidence 9999999999999999998754445789999999999999999999999999999999999999999999999999532
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 008090 561 GAQPNQTLPPPPSDLPKC 578 (578)
Q Consensus 561 ~~~~~~~~~~~p~~~~~c 578 (578)
.+.++.+|++++.|
T Consensus 548 ----~~~~~~~p~~~~~C 561 (574)
T PLN02191 548 ----LNRIGKIPDEALGC 561 (574)
T ss_pred ----hhhccCCCcchhhh
Confidence 24445688999999
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=1.1e-93 Score=777.58 Aligned_cols=512 Identities=32% Similarity=0.583 Sum_probs=386.6
Q ss_pred eEEEEEEEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCC-CceeEEEeeeeeccCCCCCCCCCccccc
Q 008090 33 TRHYTFNIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVS-NNVTIHWHGVRQVTSGWADGPAYVTQCP 111 (578)
Q Consensus 33 ~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DG~~~~~q~~ 111 (578)
+|+|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|.+. .+++|||||+++..++|+||+++++||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 488999999999999999999999999999999999999999999999995 8999999999999999999999999999
Q ss_pred cCCCCeEEEEEEEcCCCCceeeecCcchhc-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHHHHHHHHhcC
Q 008090 112 IQTGQSYTYNFTITGQRGTLLWHAHISWLR-STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEAIISQALQTG 190 (578)
Q Consensus 112 i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g 190 (578)
|+||++++|+|++ .++||||||||...++ +||+|+|||+++.+...++ .+|+|++|+++||+++...+.+.......
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999998 7899999999998888 8999999999886544444 46899999999999988765443322111
Q ss_pred -CCCCCCceEEEcCccCCCcccCC------------------C-CeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEE
Q 008090 191 -AGPNVSDAYTINGLPGPLYNCSS------------------K-DTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLT 250 (578)
Q Consensus 191 -~~~~~~~~~liNG~~~~~~~~~~------------------~-~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~ 250 (578)
.....++.++|||+.. +.|.. . ....++|++|++|||||||+|+.+.+.|+|+||+|+
T Consensus 159 ~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~ 236 (541)
T TIGR03388 159 MRWIGEPQSLLINGRGQ--FNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLT 236 (541)
T ss_pred CcCCCCCcceEECCCCC--CCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEE
Confidence 1113568899999853 23321 1 224589999999999999999999999999999999
Q ss_pred EEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCC
Q 008090 251 VVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQL 330 (578)
Q Consensus 251 via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~ 330 (578)
|||+||++++|+.++.|.|++||||||+|++++.+ +++|+|++.....+ .......|||+|.++.....+ +.+
T Consensus 237 VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~-~~~y~ira~~~~~~---~~~~~~~aiL~Y~~~~~~~~p---~~~ 309 (541)
T TIGR03388 237 VVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDP-SRNYWISVGVRGRK---PNTPPGLTVLNYYPNSPSRLP---PTP 309 (541)
T ss_pred EEEeCCEecccceeCeEEecCCCEEEEEEeCCCCC-CCcEEEEEecccCC---CCCccEEEEEEECCCCCCCCC---CCC
Confidence 99999999999999999999999999999998753 36899998754332 133467899999875431000 000
Q ss_pred CCCCCCCCCCcccccccccccccccCCCCCCCCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcc
Q 008090 331 YKPTLPSINDTSFAVNFTRKFRSLASVKYPANVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPST 410 (578)
Q Consensus 331 ~~p~~~~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~ 410 (578)
. |..+.+++....... .+..+.... ....+...++++.+...... .+..+.|++|+++|..|..
T Consensus 310 ~-~~~p~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~n~~s~~~p~~ 373 (541)
T TIGR03388 310 P-PVTPAWDDFDRSKAF--SLAIKAAMG-SPKPPETSDRRIVLLNTQNK------------INGYTKWAINNVSLTLPHT 373 (541)
T ss_pred C-CCCCCccccchhhcc--chhhhcccc-CCCCCCCCCcEEEEeccCcc------------cCceEEEEECcccCCCCCc
Confidence 1 222333332111100 111111100 11123345666554332211 1234679999999998888
Q ss_pred hhhhhhhcCCCCCcccCCCC-CCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCC---CCCCCCccccCC
Q 008090 411 AILQSYFFGQNNGVYTTDFP-VKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSIL---GAESHPLHLHGF 486 (578)
Q Consensus 411 ~~l~~~~~~~~~g~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~---~~~~HP~HlHG~ 486 (578)
|+|.+.++++. +.++.+.+ ...+..|+..... .+...+.++.++.++.|++||++|+|.+.. ....||||||||
T Consensus 374 p~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh 451 (541)
T TIGR03388 374 PYLGSLKYNLL-NAFDQKPPPENYPRDYDIFKPP-PNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGH 451 (541)
T ss_pred cHHHHHhhcCC-ccccCCCCcccccccccccCCC-cccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCC
Confidence 88777655432 22222110 0011112111111 112245578899999999999999996421 246899999999
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEecCCCCCC
Q 008090 487 NFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQNGAQPNQ 566 (578)
Q Consensus 487 ~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~~~ 566 (578)
+||||++|.|.|+.......+|+.+|++|||+.|+++||++|||++||||.|+|||||+||+..||+.+|.+. .+
T Consensus 452 ~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-----~~ 526 (541)
T TIGR03388 452 DFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-----VE 526 (541)
T ss_pred ceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc-----cc
Confidence 9999999999998654455789999999999999999999999999999999999999999999999999754 25
Q ss_pred CCCCCCCCCCCC
Q 008090 567 TLPPPPSDLPKC 578 (578)
Q Consensus 567 ~~~~~p~~~~~c 578 (578)
+++.+|+++++|
T Consensus 527 ~~~~~P~~~~~C 538 (541)
T TIGR03388 527 KVGKLPKEALGC 538 (541)
T ss_pred ccCCCCccccCC
Confidence 667899999999
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=2.7e-90 Score=748.80 Aligned_cols=495 Identities=28% Similarity=0.472 Sum_probs=372.6
Q ss_pred EEEEEEEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCC-CceeEEEeeeeeccCCCCCCCCCcccccc
Q 008090 34 RHYTFNIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVS-NNVTIHWHGVRQVTSGWADGPAYVTQCPI 112 (578)
Q Consensus 34 ~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DG~~~~~q~~i 112 (578)
-.|+|+|++..++++|+++.+++|||++|||+|++++||+|+|+|+|.|+ ++|+|||||+++...+|+||+|++|||+|
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI 88 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPI 88 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCC
Confidence 35899999999999999999999999999999999999999999999996 89999999999999999999999999999
Q ss_pred CCCCeEEEEEEEc-CCCCceeeecCcchhcccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHHHHHHHHhcCC
Q 008090 113 QTGQSYTYNFTIT-GQRGTLLWHAHISWLRSTLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEAIISQALQTGA 191 (578)
Q Consensus 113 ~pG~~~~y~f~~~-~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~ 191 (578)
+||++|+|+|+++ +++||||||||...|+.||+|+|||+++...+. .+|+|++|+++||+++...++.........
T Consensus 89 ~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~l~G~lIV~~~~~~~~---~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 165 (538)
T TIGR03390 89 PPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTAFGPLIVEDCEPPPY---KYDDERILLVSDFFSATDEEIEQGLLSTPF 165 (538)
T ss_pred CCCCcEEEEEEecCCCCeeeEEecCCchhhhcceeEEEEccCCccCC---CccCcEEEEEeCCCCCCHHHHHhhhhccCC
Confidence 9999999999974 589999999999988888999999998754332 458999999999999988776544332211
Q ss_pred -CCCCCceEEEcCccCCCcc---cC---CCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCce-EEEEeecCCcccceE
Q 008090 192 -GPNVSDAYTINGLPGPLYN---CS---SKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHT-LTVVEADAVYVKPFD 263 (578)
Q Consensus 192 -~~~~~~~~liNG~~~~~~~---~~---~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~-~~via~DG~~v~P~~ 263 (578)
....++.+||||+...... .+ ....+.++|++||+|||||||+|+.+.+.|+|+||+ |+|||+||.+++|+.
T Consensus 166 ~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~ 245 (538)
T TIGR03390 166 TWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAK 245 (538)
T ss_pred ccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceE
Confidence 1234689999999653310 01 113578999999999999999999999999999999 999999999999999
Q ss_pred ecEEEeCCCceEEEEEEcCCCCC-----CCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCC
Q 008090 264 TDKLLITPGQTANVLLRTKPYFP-----NATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSI 338 (578)
Q Consensus 264 ~d~v~l~pgeR~dv~v~~~~~~~-----~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~ 338 (578)
++++.|++||||||+|+++++.. .++|||++...... +.....|||+|.++... ..+..+.. +..+..
T Consensus 246 v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~----~~~~~~aiL~Y~~~~~~--~~~~~p~~-~~~~~~ 318 (538)
T TIGR03390 246 IDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRP----KVYRGYAVLRYRSDKAS--KLPSVPET-PPLPLP 318 (538)
T ss_pred eCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCC----CcceEEEEEEeCCCCCC--CCCCCCCC-CCCCcc
Confidence 99999999999999999987521 28999998754321 33467899999865331 10000011 111110
Q ss_pred CCcccccccccccccccCCCCC-CCCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeec--Ccchhhhh
Q 008090 339 NDTSFAVNFTRKFRSLASVKYP-ANVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVL--PSTAILQS 415 (578)
Q Consensus 339 ~~~~~~~~~~~~l~~l~~~~~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~--p~~~~l~~ 415 (578)
.+.... ....+.++.....+ ...+..+++++.+.+..... ..++.+.|.+||++|.. |..|+|..
T Consensus 319 ~~~~~~--~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~----------~~~g~~~~~~N~~s~~~~~~~~P~L~~ 386 (538)
T TIGR03390 319 NSTYDW--LEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVD----------PLNGRVAWLQNGLSWTESVRQTPYLVD 386 (538)
T ss_pred Ccchhh--hheeeEecCccccCCCCCCCcCceEEEEEcccccc----------ccCCeEEEEECCcccCCCCCCCchHHH
Confidence 110000 01123333221111 11134457777666654321 11235789999999986 67787766
Q ss_pred hhcCCCCCcccCCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCC-----CCCCCCccccCCceEE
Q 008090 416 YFFGQNNGVYTTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSIL-----GAESHPLHLHGFNFFV 490 (578)
Q Consensus 416 ~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~-----~~~~HP~HlHG~~F~V 490 (578)
.+.+ +. +..++ |+ .. .........+.++.++.|++|||+|+|.... ....||||||||+|||
T Consensus 387 ~~~~---~~-----~~~~~--~~--~~-~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~v 453 (538)
T TIGR03390 387 IYEN---GL-----PATPN--YT--AA-LANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYD 453 (538)
T ss_pred HhcC---CC-----CcCCC--cc--cc-cccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEE
Confidence 5432 11 00010 11 00 0000122346678899999999999996411 2479999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCcceeeeeC----------CCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEec
Q 008090 491 VGLGFGNYDPDKDLMNFNLVDPMERNTIGVP----------AGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQN 560 (578)
Q Consensus 491 v~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp----------p~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~ 560 (578)
|++|.|.|++......+++.+|++|||+.|| ++||++|||++||||.|+|||||+||+..||+.+|.|.+
T Consensus 454 lg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~ 533 (538)
T TIGR03390 454 IGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGD 533 (538)
T ss_pred EcccccccCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCC
Confidence 9999999987554456788999999999996 789999999999999999999999999999999999976
Q ss_pred CCC
Q 008090 561 GAQ 563 (578)
Q Consensus 561 ~~~ 563 (578)
.++
T Consensus 534 ~~~ 536 (538)
T TIGR03390 534 AED 536 (538)
T ss_pred hHH
Confidence 543
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=3.7e-77 Score=644.95 Aligned_cols=423 Identities=26% Similarity=0.461 Sum_probs=312.6
Q ss_pred EEEEEEEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccC
Q 008090 34 RHYTFNIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQ 113 (578)
Q Consensus 34 ~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~ 113 (578)
++|+|++++..++++|+.+.+|+|||++|||+|++++||+|+|+|+|.++++|+|||||+++... +||+|+++||+|+
T Consensus 46 ~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~--~DGvP~vt~~~I~ 123 (587)
T TIGR01480 46 TEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPFQ--MDGVPGVSFAGIA 123 (587)
T ss_pred ceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCcc--ccCCCcccccccC
Confidence 68999999999999999999999999999999999999999999999999999999999998754 9999999999999
Q ss_pred CCCeEEEEEEEcCCCCceeeecCcchhc-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHHHHHHHHh----
Q 008090 114 TGQSYTYNFTITGQRGTLLWHAHISWLR-STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEAIISQALQ---- 188 (578)
Q Consensus 114 pG~~~~y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~~~~~~~~---- 188 (578)
||++++|+|++ .++||||||||...+. .||+|+|||++++..+. .+|+|++|+++||++.+..+++.....
T Consensus 124 PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~---~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~ 199 (587)
T TIGR01480 124 PGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPV---RADREHVVLLSDWTDLDPAALFRKLKVMAGH 199 (587)
T ss_pred CCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccC---CCCceEEEEeeecccCCHHHHHHhhhccccc
Confidence 99999999998 7899999999998877 89999999998654333 468999999999998776665433210
Q ss_pred -----------------cCCC----------------C------CCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEE
Q 008090 189 -----------------TGAG----------------P------NVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLL 229 (578)
Q Consensus 189 -----------------~g~~----------------~------~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rl 229 (578)
.|.. . .....+||||+.. ...+++.+++|++|||
T Consensus 200 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~-------~~~~~~~v~~G~rvRL 272 (587)
T TIGR01480 200 DNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTP-------AGNWTGLFRPGEKVRL 272 (587)
T ss_pred ccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccC-------CCCceEEECCCCEEEE
Confidence 0100 0 0012478999853 2346789999999999
Q ss_pred EEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcce
Q 008090 230 RLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTT 309 (578)
Q Consensus 230 RliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~ 309 (578)
||||+|+.+.+.|+|+||+|+||++||++++|+.++++.|+|||||||+|+..+. |.|.|.+..... ....
T Consensus 273 R~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~~---g~~~i~a~~~~~------~~~~ 343 (587)
T TIGR01480 273 RFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTGD---DAFTIFAQDSDR------TGYA 343 (587)
T ss_pred EEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCCC---ceEEEEEEecCC------CceE
Confidence 9999999999999999999999999999999999999999999999999998754 899999875422 2355
Q ss_pred EEEEEEeCCCCCCcCccccCCCCCC-CCCCCCccc--------c--ccc---c-cc---------------c--cc----
Q 008090 310 AGILEYKHPSNHSISSKKLQLYKPT-LPSINDTSF--------A--VNF---T-RK---------------F--RS---- 353 (578)
Q Consensus 310 ~ail~y~~~~~~~~~~~~~~~~~p~-~~~~~~~~~--------~--~~~---~-~~---------------l--~~---- 353 (578)
.++|++..... ...+.+++. .....+... . ..+ . .. + ..
T Consensus 344 ~~~l~~~~~~~-----~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (587)
T TIGR01480 344 RGTLAVRLGLT-----APVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKH 418 (587)
T ss_pred EEEEecCCCCC-----CCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccC
Confidence 67777765311 111111110 000000000 0 000 0 00 0 00
Q ss_pred --------------------ccCCC-------------------CCCCCCcccceEEEEEecCCCCCCCCCCcccCCCCC
Q 008090 354 --------------------LASVK-------------------YPANVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGT 394 (578)
Q Consensus 354 --------------------l~~~~-------------------~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 394 (578)
+..+. .+...+...++++.+.+.. .-.
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g--------------~m~ 484 (587)
T TIGR01480 419 PASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTG--------------NME 484 (587)
T ss_pred cccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcC--------------CCc
Confidence 00000 0000000111212111110 112
Q ss_pred eeEeeecceeeecCcchhhhhhhcCCCCCcccCCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCC
Q 008090 395 KFSASVNNVSFVLPSTAILQSYFFGQNNGVYTTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSIL 474 (578)
Q Consensus 395 ~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~ 474 (578)
++.|++||..| .+ ...+.++.|++|+|.|.|.+
T Consensus 485 ~~~wtiNG~~~--------------------------------------------~~-~~pl~v~~Gervri~l~N~t-- 517 (587)
T TIGR01480 485 RFAWSFDGEAF--------------------------------------------GL-KTPLRFNYGERLRVVLVNDT-- 517 (587)
T ss_pred eeEEEECCccC--------------------------------------------CC-CCceEecCCCEEEEEEECCC--
Confidence 34455555432 01 22456899999999999965
Q ss_pred CCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccCceeeEEeeechhhhhccceE
Q 008090 475 GAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRM 554 (578)
Q Consensus 475 ~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~ 554 (578)
.+.|||||||+.|+|+..+ |. .+.+|||+.|+|++.+.++|++||||.|+||||++.|++.|||+
T Consensus 518 -~~~HpmHlHG~~f~v~~~~-G~-------------~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~ 582 (587)
T TIGR01480 518 -MMAHPIHLHGMWSELEDGQ-GE-------------FQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFR 582 (587)
T ss_pred -CCCcceeEcCceeeeecCC-Cc-------------ccccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcE
Confidence 4899999999999998643 21 13578999999999999999999999999999999999999999
Q ss_pred EEEEe
Q 008090 555 AWIVQ 559 (578)
Q Consensus 555 ~~~V~ 559 (578)
.|+|.
T Consensus 583 ~~~v~ 587 (587)
T TIGR01480 583 EVTVR 587 (587)
T ss_pred EEEeC
Confidence 99883
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=5.2e-73 Score=608.68 Aligned_cols=427 Identities=20% Similarity=0.227 Sum_probs=296.9
Q ss_pred EEEEEEEEEEeeecCcee-eeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCcccccc
Q 008090 34 RHYTFNIKYHNVTRLCHT-RNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPI 112 (578)
Q Consensus 34 ~~~~l~~~~~~~~~~g~~-~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i 112 (578)
..|+|++++...++++.. ..+|+|||++|||+|++++||+|+|+|+|.|+++|+|||||+++... +||+| ||+|
T Consensus 46 ~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~~--~DG~p---q~~I 120 (523)
T PRK10965 46 GRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPGE--VDGGP---QGII 120 (523)
T ss_pred ccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCCc--cCCCC---CCCC
Confidence 469999999999998644 46999999999999999999999999999999999999999999876 99986 8999
Q ss_pred CCCCeEEEEEEEcCCCCceeeecCcch----hc-ccceeeEEEeCCCCCCCCCCC--CCCcEeEEeeecccCChHHHHHH
Q 008090 113 QTGQSYTYNFTITGQRGTLLWHAHISW----LR-STLYGPIIILPKRNESYPFQK--PHKEIPILFGEWFNVDPEAIISQ 185 (578)
Q Consensus 113 ~pG~~~~y~f~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~p~~~--~~~e~~l~~~d~~~~~~~~~~~~ 185 (578)
.||++++|+|++++++||||||+|.++ |. +||+|+|||+++.+.+.+++. ...|++++++||+.+...+....
T Consensus 121 ~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~ 200 (523)
T PRK10965 121 APGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQ 200 (523)
T ss_pred CCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceecc
Confidence 999999999998656899999999853 43 899999999998754433332 34699999999987654432111
Q ss_pred HH-hcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEE-cCceEEEEeecCCcc-cce
Q 008090 186 AL-QTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSI-ANHTLTVVEADAVYV-KPF 262 (578)
Q Consensus 186 ~~-~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l-~gh~~~via~DG~~v-~P~ 262 (578)
.. .....+..++.++|||+.+ |.+.++ +++|||||||+|+.+.+.|++ +||+|+|||.||+++ +|+
T Consensus 201 ~~~~~~~~g~~gd~~lVNG~~~----------p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~ 269 (523)
T PRK10965 201 LDVMTAAVGWFGDTLLTNGAIY----------PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPV 269 (523)
T ss_pred ccccccccCccCCeEEECCccc----------ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCcc
Confidence 10 0111234568999999976 446664 579999999999999999998 799999999999987 899
Q ss_pred EecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCC-CCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCc
Q 008090 263 DTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMG-TIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDT 341 (578)
Q Consensus 263 ~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~-~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~ 341 (578)
.+++|.|+|||||||+|++++. ++|.+.......... .........++++..... .....+ | .
T Consensus 270 ~v~~l~lapGeR~dvlv~~~~~---~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~-P---~---- 333 (523)
T PRK10965 270 KVSELPILMGERFEVLVDTSDG---KAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLI-----SASGTL-P---D---- 333 (523)
T ss_pred EeCeEEECccceEEEEEEcCCC---ceEEEEEecccCcccccccCCCceeEEEEeccCc-----CCCCcC-C---h----
Confidence 9999999999999999999874 889988764322110 000112345566654321 000111 1 0
Q ss_pred ccccccccccccccCCCCCCCCCcccceEEEEEecCC----CCC----CCCCCcccC---------C-CC----------
Q 008090 342 SFAVNFTRKFRSLASVKYPANVPQIVDRKFFFTVGLG----SNP----CPKNTTCQG---------P-NG---------- 393 (578)
Q Consensus 342 ~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~----~~~----~~~~~~~~~---------~-~g---------- 393 (578)
.+..+... +... ....+++.+.+... .+. ......+.. . .|
T Consensus 334 --------~l~~~~~~--~~~~-~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (523)
T PRK10965 334 --------SLASLPAL--PSLE-GLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAA 402 (523)
T ss_pred --------hhccCCCC--Cccc-ccceeEEEEeeccccchhhhhhccccccccccccccccccccccccccccccccccc
Confidence 01111000 0000 01123333322110 000 000000000 0 00
Q ss_pred --Ce---e--EeeecceeeecCcchhhhhhhcCCCCCcccCCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEE
Q 008090 394 --TK---F--SASVNNVSFVLPSTAILQSYFFGQNNGVYTTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVEL 466 (578)
Q Consensus 394 --~~---~--~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~ 466 (578)
+. + .|+|||++|. .....+.++.|++|+|
T Consensus 403 ~~~~~~~~~~~~~ING~~~~--------------------------------------------~~~~~~~~~~G~~e~w 438 (523)
T PRK10965 403 DAGPAFDFHHANKINGKAFD--------------------------------------------MNKPMFAAKKGQYERW 438 (523)
T ss_pred cccccccccccccCCCeECC--------------------------------------------CCCcceecCCCCEEEE
Confidence 00 0 0233333221 1123456899999999
Q ss_pred EEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEc----cCceeeEEee
Q 008090 467 VMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFA----DNPGVWFMHC 542 (578)
Q Consensus 467 ~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a----dnpG~wl~HC 542 (578)
.|.|.+. .+.|||||||++|||++++.. ......+.|||||.|++ +.+.|++++ +++|.|||||
T Consensus 439 ~i~N~~~--~~~Hp~HlHg~~F~Vl~~~g~---------~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HC 506 (523)
T PRK10965 439 VISGVGD--MMLHPFHIHGTQFRILSENGK---------PPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHC 506 (523)
T ss_pred EEEeCCC--CCccCeEEeCcEEEEEEecCC---------CCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEe
Confidence 9999652 368999999999999998632 12234568999999987 667766665 4677999999
Q ss_pred echhhhhccceEEEEEe
Q 008090 543 HLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 543 Hil~H~d~GM~~~~~V~ 559 (578)
|||+|||.|||+.|+|.
T Consensus 507 HiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 507 HLLEHEDTGMMLGFTVS 523 (523)
T ss_pred CchhhhccCccceeEeC
Confidence 99999999999999983
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=2.5e-71 Score=590.87 Aligned_cols=402 Identities=16% Similarity=0.210 Sum_probs=290.1
Q ss_pred EEEEEEEEEeeecCc-eeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccC
Q 008090 35 HYTFNIKYHNVTRLC-HTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQ 113 (578)
Q Consensus 35 ~~~l~~~~~~~~~~g-~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~ 113 (578)
.++|++++..+++++ ..+.+|+|||++|||+|++++||+|+|+|+|.|+++|++||||+++... .+||++ ++|.
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~----~~I~ 121 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA----RMMS 121 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc----ccCC
Confidence 379999999999885 6788999999999999999999999999999999999999999998876 467765 7899
Q ss_pred CCCeEEEEEEEcCCCCceeeecCcch----hc-ccceeeEEEeCCCCCCCCCCC-C-CCcEeEEeeecccCChHHHHHHH
Q 008090 114 TGQSYTYNFTITGQRGTLLWHAHISW----LR-STLYGPIIILPKRNESYPFQK-P-HKEIPILFGEWFNVDPEAIISQA 186 (578)
Q Consensus 114 pG~~~~y~f~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~p~~~-~-~~e~~l~~~d~~~~~~~~~~~~~ 186 (578)
||++++|+|.+.+++||||||+|.++ |. +||+|++||+++.+.+.+++. + ..|++|+++||+.+........
T Consensus 122 PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~- 200 (471)
T PRK10883 122 PNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYN- 200 (471)
T ss_pred CCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccc-
Confidence 99999999998667999999999876 33 799999999988654444432 2 3499999999987654332110
Q ss_pred HhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEE-cCceEEEEeecCCcc-cceEe
Q 008090 187 LQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSI-ANHTLTVVEADAVYV-KPFDT 264 (578)
Q Consensus 187 ~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l-~gh~~~via~DG~~v-~P~~~ 264 (578)
........++.++|||+.+ +.++|++| +|||||||+|+.+.+.|+| +||+|+||+.||+++ +|+.+
T Consensus 201 -~~~~~g~~gd~~lvNG~~~----------p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~ 268 (471)
T PRK10883 201 -EPGSGGFVGDTLLVNGVQS----------PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSV 268 (471)
T ss_pred -ccccCCccCCeeEECCccC----------CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEe
Confidence 1111234578999999975 46899875 7999999999999999999 899999999998876 89999
Q ss_pred cEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCC----CCCCc---ceEEEEEEeCCCCCCcCccccCCCCCCCCC
Q 008090 265 DKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMG----TIDNS---TTAGILEYKHPSNHSISSKKLQLYKPTLPS 337 (578)
Q Consensus 265 d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~----~~~~~---~~~ail~y~~~~~~~~~~~~~~~~~p~~~~ 337 (578)
+++.|+|||||||+|++++. +.+.+++........ .+... ....+++...... ....+. .+|.
T Consensus 269 ~~l~l~pGeR~dvlVd~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~p~ 338 (471)
T PRK10883 269 KQLSLAPGERREILVDMSNG---DEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGL---LPLVTD----NLPM 338 (471)
T ss_pred CeEEECCCCeEEEEEECCCC---ceEEEECCCccccccccccccCCccccccceeEEEEcccc---ccCCCC----cCCh
Confidence 99999999999999999764 677776532111000 00000 0112222222100 000000 0000
Q ss_pred CCCcccccccccccccccCCCCCCCCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhhh
Q 008090 338 INDTSFAVNFTRKFRSLASVKYPANVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYF 417 (578)
Q Consensus 338 ~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~ 417 (578)
. +.... ..+....++..+.++.. .|.|||++|...
T Consensus 339 ------------~---l~~~~---~~~~~~~~~~~~~l~~~------------------~~~INg~~~~~~--------- 373 (471)
T PRK10883 339 ------------R---LLPDE---IMEGSPIRSREISLGDD------------------LPGINGALWDMN--------- 373 (471)
T ss_pred ------------h---hcCCC---CCCCCCcceEEEEecCC------------------cCccCCcccCCC---------
Confidence 0 00000 01111233333333210 145777655211
Q ss_pred cCCCCCcccCCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCC
Q 008090 418 FGQNNGVYTTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGN 497 (578)
Q Consensus 418 ~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~ 497 (578)
.....++.|++|+|.|.|. +.|||||||+.|||++++...
T Consensus 374 -----------------------------------~~~~~~~~g~~e~W~~~n~-----~~HP~HlHg~~FqVl~~~G~~ 413 (471)
T PRK10883 374 -----------------------------------RIDVTAQQGTWERWTVRAD-----MPQAFHIEGVMFLIRNVNGAM 413 (471)
T ss_pred -----------------------------------cceeecCCCCEEEEEEECC-----CCcCEeECCccEEEEEecCCC
Confidence 1123568899999999883 689999999999999985321
Q ss_pred CCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccCce----eeEEeeechhhhhccceEEEEEec
Q 008090 498 YDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADNPG----VWFMHCHLDVHTSWGLRMAWIVQN 560 (578)
Q Consensus 498 ~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG----~wl~HCHil~H~d~GM~~~~~V~~ 560 (578)
....+..|||||.|+ +.+.|+++++++| .||||||||+|||.|||+.|+|.+
T Consensus 414 ---------~~~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 414 ---------PFPEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred ---------CCccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 112234799999996 4699999999887 899999999999999999999975
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.3e-57 Score=488.23 Aligned_cols=400 Identities=26% Similarity=0.374 Sum_probs=285.9
Q ss_pred cCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcC
Q 008090 47 RLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITG 126 (578)
Q Consensus 47 ~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~ 126 (578)
..+.....|+|||++|||+|++++||+|+|+++|.+...|++||||+..+.. +||++..+++.+.||++++|.|+. .
T Consensus 47 ~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p~~--~dG~~~~~~~~~~~~~~~~y~f~~-~ 123 (451)
T COG2132 47 APGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVPGE--MDGVPPLTQIPPGPGETPTYTFTQ-D 123 (451)
T ss_pred ecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccCcc--ccCCCcccccCCCCCCcEEEeecC-C
Confidence 4567788999999999999999999999999999998779999999888744 999999999999999999999997 5
Q ss_pred CCCceeeecCcchhc-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHHHHHHHHhcCCCCCCCceEEEcCcc
Q 008090 127 QRGTLLWHAHISWLR-STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEAIISQALQTGAGPNVSDAYTINGLP 205 (578)
Q Consensus 127 ~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~ 205 (578)
.+||||||+|.++|. +||+|++||+++.+.+. ..|.+.+++..+|+.......... ........++..+|||..
T Consensus 124 ~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~vnG~~ 198 (451)
T COG2132 124 VPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE--GPAMGGFPGDTLLVNGAI 198 (451)
T ss_pred CCcceEeccCCCchhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC--CccccCCCCCeEEECCCc
Confidence 677999999999987 99999999999866544 458888888889876665543222 112233456899999976
Q ss_pred CCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCC
Q 008090 206 GPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYF 285 (578)
Q Consensus 206 ~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~ 285 (578)
++ +...++.+|||||+|+++.+.+.+++.++.|+||++||.+++|..+|.+.|+||||+||++++.+.
T Consensus 199 ~p-----------~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~~~- 266 (451)
T COG2132 199 LP-----------FKAVPGGVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMNDG- 266 (451)
T ss_pred cc-----------eeecCCCeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcCCC-
Confidence 52 444555679999999998888889999999999999999998899999999999999999999884
Q ss_pred CCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCC--CCCCCCcccccccccccccccCCCCCCCC
Q 008090 286 PNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPT--LPSINDTSFAVNFTRKFRSLASVKYPANV 363 (578)
Q Consensus 286 ~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~l~~l~~~~~p~~~ 363 (578)
+.+.+.|.. .+.. ....+......... .+...+++. .+.. +. .. .....+...... .
T Consensus 267 --~~~~l~~~~-~~~~-----~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-d~--~~---~~~~~~~~~~~~--~ 325 (451)
T COG2132 267 --GAVTLTALG-EDMP-----DTLKGFRAPNPILT-----PSYPVLNGRVGAPTG-DM--AD---HAPVGLLVTILV--E 325 (451)
T ss_pred --CeEEEEecc-ccCC-----ceeeeeeccccccc-----cccccccccccCCCc-ch--hh---ccccccchhhcC--C
Confidence 899999875 1111 01111111111000 000000000 0000 00 00 000000000000 0
Q ss_pred Cc-ccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhhhcCCCCCcccCCCCCCCCCCCCCCCC
Q 008090 364 PQ-IVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYFFGQNNGVYTTDFPVKPPMPFNYTGT 442 (578)
Q Consensus 364 p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~ 442 (578)
+. ..++...+.. .-..+.|.+|++.|
T Consensus 326 ~~~~~~~~~~l~~----------------~~~~~~~~~n~~~~------------------------------------- 352 (451)
T COG2132 326 PGPNRDTDFHLIG----------------GIGGYVWAINGKAF------------------------------------- 352 (451)
T ss_pred Ccccccccchhhc----------------ccccccccccCccC-------------------------------------
Confidence 00 0000000000 00011233333222
Q ss_pred CCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCC
Q 008090 443 PPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPA 522 (578)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp 522 (578)
......+.++.|++++|+|.|.+ .+.||||+||+.|+|++.+ .......+.||||+.+.+
T Consensus 353 -------~~~~~~~~~~~G~~~~~~i~n~~---~~~HP~HlHg~~F~v~~~~----------~~~~~~~~~~kDTv~v~~ 412 (451)
T COG2132 353 -------DDNRVTLIAKAGTRERWVLTNDT---PMPHPFHLHGHFFQVLSGD----------APAPGAAPGWKDTVLVAP 412 (451)
T ss_pred -------CCCcCceeecCCCEEEEEEECCC---CCccCeEEcCceEEEEecC----------CCcccccCccceEEEeCC
Confidence 01234567899999999999965 4899999999999999985 123345678999999999
Q ss_pred CcEEEEEEEccCceeeEEeeechhhhhccceEEEEEec
Q 008090 523 GGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQN 560 (578)
Q Consensus 523 ~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~ 560 (578)
++.++|+|.+++||.|+||||+++|++.|||..+.|..
T Consensus 413 ~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~~ 450 (451)
T COG2132 413 GERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVVP 450 (451)
T ss_pred CeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEecC
Confidence 99999999999999999999999999999999998853
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=3.6e-46 Score=377.57 Aligned_cols=264 Identities=18% Similarity=0.204 Sum_probs=215.1
Q ss_pred cceeEEEEEEEEEEeeec-CceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCC--CceeEEEeeeeeccCCCCCCCCC
Q 008090 30 AGITRHYTFNIKYHNVTR-LCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVS--NNVTIHWHGVRQVTSGWADGPAY 106 (578)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~-~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~--~~~siH~HG~~~~~~~~~DG~~~ 106 (578)
...+++|+|++++..+++ +|..+.+|+|||++|||+|++++||+|+|+|+|.+. .++++||||.. ++||++.
T Consensus 24 ~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~~~ 98 (311)
T TIGR02376 24 GPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGGAA 98 (311)
T ss_pred CCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCCCc
Confidence 457789999999999885 689999999999999999999999999999999985 58999999962 3799887
Q ss_pred ccccccCCCCeEEEEEEEcCCCCceeeecCcch----hc-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHH
Q 008090 107 VTQCPIQTGQSYTYNFTITGQRGTLLWHAHISW----LR-STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEA 181 (578)
Q Consensus 107 ~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~ 181 (578)
++| |.||++++|+|++ .++||||||||.++ +. +||+|+|||++++..+ ..|+|++++++||+......
T Consensus 99 ~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~----~~d~e~~l~l~d~~~~~~~~ 171 (311)
T TIGR02376 99 LTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLP----EYDKEYYIGESDLYTPKDEG 171 (311)
T ss_pred cee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCc----CcceeEEEeeeeEecccccc
Confidence 777 9999999999997 78999999999654 44 8999999999875322 46899999999998865432
Q ss_pred HHHHH--HhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcc
Q 008090 182 IISQA--LQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYV 259 (578)
Q Consensus 182 ~~~~~--~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v 259 (578)
..... .........++.++|||+.+++ .+.+++++|+++||||+|++..+.+.||++|+.+++|+.||.++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~iNG~~~~~-------~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~ 244 (311)
T TIGR02376 172 EGGAYEDDVAAMRTLTPTHVVFNGAVGAL-------TGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFA 244 (311)
T ss_pred ccccccchHHHHhcCCCCEEEECCccCCC-------CCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCccc
Confidence 10000 0000011345899999997543 13568999999999999999888889999999999999999999
Q ss_pred cce--EecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCC
Q 008090 260 KPF--DTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPS 319 (578)
Q Consensus 260 ~P~--~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~ 319 (578)
.+. .++++.|+||||+||+|+++++ |.|+++||.+.... .....++|+|++..
T Consensus 245 ~~~~~~~~~~~i~PG~R~dv~v~~~~p---G~y~~~~~~~~~~~----~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 245 NPPNRDVETWFIPGGSAAAALYTFEQP---GVYAYVDHNLIEAF----EKGAAAQVKVEGAW 299 (311)
T ss_pred CCCCCCcceEEECCCceEEEEEEeCCC---eEEEEECcHHHHHH----hCCCEEEEEECCCC
Confidence 653 4899999999999999999986 99999999754321 23567999998754
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=9.4e-35 Score=251.43 Aligned_cols=116 Identities=46% Similarity=0.803 Sum_probs=108.4
Q ss_pred EEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeE
Q 008090 39 NIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSY 118 (578)
Q Consensus 39 ~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~ 118 (578)
.+++..+.++|..+.+|+|||++|||+|+|++||+|+|+|+|.+..+++|||||+++...+|+||+++++||+|.||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 47889999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCceeeecCcchhc-ccceeeEEEeCCC
Q 008090 119 TYNFTITGQRGTLLWHAHISWLR-STLYGPIIILPKR 154 (578)
Q Consensus 119 ~y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~ 154 (578)
+|+|++++++||||||||.+.+. +||+|+|||++++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 99999965599999999999875 9999999999863
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=6.2e-29 Score=223.87 Aligned_cols=108 Identities=41% Similarity=0.771 Sum_probs=96.1
Q ss_pred cCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEE
Q 008090 449 VSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAI 528 (578)
Q Consensus 449 ~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~i 528 (578)
.+.+..++.++.|+++||+|+|.+ ...|||||||++|+|++.+.+.++.. ....+++.+|.||||+.|+++++++|
T Consensus 29 ~~~~~~~~~~~~g~~v~~~l~N~~---~~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i 104 (138)
T PF07731_consen 29 FFGNTPVIEVKNGDVVEIVLQNNG---SMPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVI 104 (138)
T ss_dssp SSSTTSEEEEETTSEEEEEEEECT---TSSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEE
T ss_pred cCCCcceEEEeCCCEEEEEEECCC---CCccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEE
Confidence 456788999999999999999965 47999999999999999987665443 34567889999999999999999999
Q ss_pred EEEccCceeeEEeeechhhhhccceEEEEEec
Q 008090 529 RFFADNPGVWFMHCHLDVHTSWGLRMAWIVQN 560 (578)
Q Consensus 529 rf~adnpG~wl~HCHil~H~d~GM~~~~~V~~ 560 (578)
||+++|||.|+||||+++|+|.|||+.|.|.+
T Consensus 105 ~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 105 RFRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 99999999999999999999999999999975
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.94 E-value=4.4e-26 Score=209.83 Aligned_cols=149 Identities=32% Similarity=0.608 Sum_probs=121.0
Q ss_pred CcEeEEeeecccCChHHHHHHHHhcCC----CCCCCceEEEcCccCCCcccC-----CCCeeEEEEeCCcEEEEEEEecC
Q 008090 165 KEIPILFGEWFNVDPEAIISQALQTGA----GPNVSDAYTINGLPGPLYNCS-----SKDTYKLKVKPGKTYLLRLINAA 235 (578)
Q Consensus 165 ~e~~l~~~d~~~~~~~~~~~~~~~~g~----~~~~~~~~liNG~~~~~~~~~-----~~~~~~l~v~~G~~~rlRliN~~ 235 (578)
+|++|+++||++++...++......+. .+..+++++|||+.. +.|+ ....+.+.+++|++|||||||+|
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~--~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~ 78 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGR--FDCSSADYTGGEPPVIKVKPGERYRLRLINAG 78 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTC--BTTCTTGSTTSTSGEEEEETTTEEEEEEEEES
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccc--cccccccccccccceEEEcCCcEEEEEEEecc
Confidence 488999999999988877654443321 256789999999875 4444 24578999999999999999999
Q ss_pred CCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEE
Q 008090 236 LNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEY 315 (578)
Q Consensus 236 ~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y 315 (578)
+.+.+.|+|+||+|+|||+||.+++|+.++++.|+|||||||+|++++++ |+|+|++................|+|+|
T Consensus 79 ~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~--g~y~i~~~~~~~~~~~~~~~~~~aiL~Y 156 (159)
T PF00394_consen 79 ASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPP--GNYWIRASYQHDSINDPQNGNALAILRY 156 (159)
T ss_dssp SS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCS--SEEEEEEEESSSSSHSHGGGTTEEEEEE
T ss_pred CCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCC--CeEEEEEecccCCCccCCCcEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999844 9999999632222223355688999999
Q ss_pred eC
Q 008090 316 KH 317 (578)
Q Consensus 316 ~~ 317 (578)
.+
T Consensus 157 ~~ 158 (159)
T PF00394_consen 157 DG 158 (159)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 21
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.71 E-value=6.9e-16 Score=168.18 Aligned_cols=227 Identities=12% Similarity=0.179 Sum_probs=146.8
Q ss_pred EEEECCCCCC--cEEEEecCCEEEEEEEeCCC-CceeEEEeeeeeccCCCCCCCCC----ccccccCCCCeEEEEEEEcC
Q 008090 54 IISVNGQFPG--PSLVAREGDRVLIKVTNHVS-NNVTIHWHGVRQVTSGWADGPAY----VTQCPIQTGQSYTYNFTITG 126 (578)
Q Consensus 54 ~~~~Ng~~pg--P~i~v~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DG~~~----~~q~~i~pG~~~~y~f~~~~ 126 (578)
.+++||+.+. +++.+++|+++|+||.|... ....++..|......+ .||.+- +....|.||||++..+++ .
T Consensus 248 ~~LiNG~~~~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa-~DG~~v~Pv~vd~l~I~pGeRyDVlV~~-~ 325 (587)
T TIGR01480 248 TYLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVA-VDGQYVHPVSVDEFRIAPAETFDVIVEP-T 325 (587)
T ss_pred eEEEcCccCCCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEE-cCCcCcCceEeCeEEEcCcceeEEEEec-C
Confidence 3779999863 57999999999999999984 5688899998877665 899642 456779999999888886 4
Q ss_pred CCCceeeecCcchhcccceeeEEEeCCC-CCCCC-CCC----CCCcEeE------------Eee-----ec---------
Q 008090 127 QRGTLLWHAHISWLRSTLYGPIIILPKR-NESYP-FQK----PHKEIPI------------LFG-----EW--------- 174 (578)
Q Consensus 127 ~~Gt~wYH~H~~~~~~Gl~G~liV~~~~-~~~~p-~~~----~~~e~~l------------~~~-----d~--------- 174 (578)
..|.|+......+. .|...+.+..... ..+.| ... ...+... ... +.
T Consensus 326 ~~g~~~i~a~~~~~-~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (587)
T TIGR01480 326 GDDAFTIFAQDSDR-TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAP 404 (587)
T ss_pred CCceEEEEEEecCC-CceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCcccccccccc
Confidence 67899988755322 2333222222111 11111 000 0000000 000 00
Q ss_pred -cc---------------------------------------C-ChHHHHH-HHHh----------cCC-------CCCC
Q 008090 175 -FN---------------------------------------V-DPEAIIS-QALQ----------TGA-------GPNV 195 (578)
Q Consensus 175 -~~---------------------------------------~-~~~~~~~-~~~~----------~g~-------~~~~ 195 (578)
.+ . .....+. ..+. .+. +...
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~m~ 484 (587)
T TIGR01480 405 MDHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGNME 484 (587)
T ss_pred CccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCCCc
Confidence 00 0 0000000 0000 000 0111
Q ss_pred CceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceE
Q 008090 196 SDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTA 275 (578)
Q Consensus 196 ~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~ 275 (578)
...|+|||+.++ ..+.++++.|++|||||+|.+.+.| .||+|||.|.++..||.+ +...|++.|.|||++
T Consensus 485 ~~~wtiNG~~~~-------~~~pl~v~~Gervri~l~N~t~~~H-pmHlHG~~f~v~~~~G~~--~~~~dTv~V~Pg~t~ 554 (587)
T TIGR01480 485 RFAWSFDGEAFG-------LKTPLRFNYGERLRVVLVNDTMMAH-PIHLHGMWSELEDGQGEF--QVRKHTVDVPPGGKR 554 (587)
T ss_pred eeEEEECCccCC-------CCCceEecCCCEEEEEEECCCCCCc-ceeEcCceeeeecCCCcc--cccCCceeeCCCCEE
Confidence 224899999763 2346899999999999999886555 599999999999888863 233488999999999
Q ss_pred EEEEEcCCCCCCCceEEEEee
Q 008090 276 NVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 276 dv~v~~~~~~~~g~y~l~~~~ 296 (578)
++.|+++++ |.|++|||.
T Consensus 555 ~~~f~ad~p---G~w~~HCH~ 572 (587)
T TIGR01480 555 SFRVTADAL---GRWAYHCHM 572 (587)
T ss_pred EEEEECCCC---eEEEEcCCC
Confidence 999999998 999999995
No 22
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.69 E-value=2e-16 Score=142.15 Aligned_cols=101 Identities=18% Similarity=0.252 Sum_probs=77.7
Q ss_pred ceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCC---CceeEEEeeeeeccCCCCCCCCCccccccCCC----Ce--EE
Q 008090 49 CHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVS---NNVTIHWHGVRQVTSGWADGPAYVTQCPIQTG----QS--YT 119 (578)
Q Consensus 49 g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~---~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG----~~--~~ 119 (578)
+.....+.++| .++|+|++++||+|+|+|+|.+. ....||+||......+-+||++.++|+++.|+ +. .+
T Consensus 38 ~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~ 116 (148)
T TIGR03095 38 GPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTD 116 (148)
T ss_pred CCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeE
Confidence 45556677888 57899999999999999999964 34555555554433334899999999998884 11 34
Q ss_pred EEEEEcCCCCceeeecCcchhc-ccceeeEEEe
Q 008090 120 YNFTITGQRGTLLWHAHISWLR-STLYGPIIIL 151 (578)
Q Consensus 120 y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~ 151 (578)
+.|+. .++||||||||..+++ +||+|.|||+
T Consensus 117 ~tf~f-~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 117 FTYHF-STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEC-CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 56665 4799999999998888 7999999995
No 23
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.68 E-value=9.5e-15 Score=148.43 Aligned_cols=240 Identities=17% Similarity=0.097 Sum_probs=150.6
Q ss_pred CceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCC-CeEEEEEcCceEEEEeecCCcccceEecEEEeCCCce
Q 008090 196 SDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALN-DELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQT 274 (578)
Q Consensus 196 ~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~-~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR 274 (578)
.+.+++||+. ..|.+++++|++++++|.|.... ..+.+|+|++. +.||.. + ...|.||++
T Consensus 47 ~~~~~~nG~~---------pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~--~----~~~I~PG~t 107 (311)
T TIGR02376 47 YQAMTFDGSV---------PGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGA--A----LTQVNPGET 107 (311)
T ss_pred EEEEEECCcc---------cCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCC--c----ceeECCCCe
Confidence 3679999984 34889999999999999998632 45678999874 456642 1 233899999
Q ss_pred EEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCcccccccccccccc
Q 008090 275 ANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDTSFAVNFTRKFRSL 354 (578)
Q Consensus 275 ~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~l 354 (578)
+.+.|+++++ |.||+|||........ ......+.|.+..... . + ..
T Consensus 108 ~ty~F~~~~~---Gty~YH~H~~~~~~~q-~~~Gl~G~liV~~~~~----------~-~---~~---------------- 153 (311)
T TIGR02376 108 ATLRFKATRP---GAFVYHCAPPGMVPWH-VVSGMNGAIMVLPREG----------L-P---EY---------------- 153 (311)
T ss_pred EEEEEEcCCC---EEEEEEcCCCCchhHH-hhcCcceEEEeeccCC----------C-c---Cc----------------
Confidence 9999999876 9999999953210000 0112334444433110 0 1 00
Q ss_pred cCCCCCCCCCcccceEEEEEecCCCCCC--------C-CCCcccCCCCCeeEeeecceeeecCcchhhhhhhcCCCCCcc
Q 008090 355 ASVKYPANVPQIVDRKFFFTVGLGSNPC--------P-KNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYFFGQNNGVY 425 (578)
Q Consensus 355 ~~~~~p~~~p~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~ 425 (578)
++.+.+.++-..... . ....+....+ -...+||+...
T Consensus 154 -------------d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iNG~~~~------------------- 199 (311)
T TIGR02376 154 -------------DKEYYIGESDLYTPKDEGEGGAYEDDVAAMRTLTP--THVVFNGAVGA------------------- 199 (311)
T ss_pred -------------ceeEEEeeeeEeccccccccccccchHHHHhcCCC--CEEEECCccCC-------------------
Confidence 111111000000000 0 0000000000 01234443110
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCC
Q 008090 426 TTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLM 505 (578)
Q Consensus 426 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~ 505 (578)
....+.++.|++++|.|.|.+ ....+.||++|++|.++...+....
T Consensus 200 --------------------------~~~~~~v~~G~~~RlRiiNa~--~~~~~~~~~~g~~~~~v~~DG~~~~------ 245 (311)
T TIGR02376 200 --------------------------LTGDNALTAGVGERVLFVHSQ--PNRDSRPHLIGGHGDYVWVTGKFAN------ 245 (311)
T ss_pred --------------------------CCCCcccccCCcEEEEEEcCC--CCCCCCCeEecCCceEEEECCcccC------
Confidence 011235778999999999964 2467899999999999988432211
Q ss_pred CCCCCCCC-cceeeeeCCCcEEEEEEEccCceeeEEeeechhhh-hccceEEEEEecC
Q 008090 506 NFNLVDPM-ERNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHT-SWGLRMAWIVQNG 561 (578)
Q Consensus 506 ~~~~~~p~-~rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H~-d~GM~~~~~V~~~ 561 (578)
.+. ..||+.|.||+...|.++++.||.|++|||...|. ..|++++++|...
T Consensus 246 -----~~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~g~ 298 (311)
T TIGR02376 246 -----PPNRDVETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVEGA 298 (311)
T ss_pred -----CCCCCcceEEECCCceEEEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEECCC
Confidence 122 36899999999999999999999999999999998 7799999998653
No 24
>PRK10965 multicopper oxidase; Provisional
Probab=99.53 E-value=8.3e-13 Score=143.06 Aligned_cols=235 Identities=12% Similarity=0.142 Sum_probs=143.2
Q ss_pred eeeEEEECCCCCCcEEEEecCCEEEEEEEeCCC-CceeEEE-eeeeeccCCCCCCCCC-----ccccccCCCCeEEEEEE
Q 008090 51 TRNIISVNGQFPGPSLVAREGDRVLIKVTNHVS-NNVTIHW-HGVRQVTSGWADGPAY-----VTQCPIQTGQSYTYNFT 123 (578)
Q Consensus 51 ~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~siH~-HG~~~~~~~~~DG~~~-----~~q~~i~pG~~~~y~f~ 123 (578)
...++++||+. .|.+.++ |.++|+||.|... +...+.+ .|......+ .||.+. +....|.||||++..++
T Consensus 211 ~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa-~DG~~l~~P~~v~~l~lapGeR~dvlv~ 287 (523)
T PRK10965 211 FGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIA-SDGGLLAEPVKVSELPILMGERFEVLVD 287 (523)
T ss_pred cCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEE-eCCCcccCccEeCeEEECccceEEEEEE
Confidence 44678999995 5888885 6699999999984 5667776 455444433 798432 34567999999999998
Q ss_pred EcCCCCceeeecCcchhcccc--------eeeEEEeCCC--C-CCCC-----CCC-------CCCcEeEEeeeccc----
Q 008090 124 ITGQRGTLLWHAHISWLRSTL--------YGPIIILPKR--N-ESYP-----FQK-------PHKEIPILFGEWFN---- 176 (578)
Q Consensus 124 ~~~~~Gt~wYH~H~~~~~~Gl--------~G~liV~~~~--~-~~~p-----~~~-------~~~e~~l~~~d~~~---- 176 (578)
+ .+.|.++...-.... .|+ +-.+.+.... . ...| .+. ..+...+.+..+..
T Consensus 288 ~-~~~~~~~l~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m 365 (523)
T PRK10965 288 T-SDGKAFDLVTLPVSQ-MGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMMGM 365 (523)
T ss_pred c-CCCceEEEEEecccC-cccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchhhh
Confidence 7 456776665432111 111 1223333211 0 0010 000 01222332221100
Q ss_pred -----CChHHHHHH--------HHhcC-------C----CC--CCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEE
Q 008090 177 -----VDPEAIISQ--------ALQTG-------A----GP--NVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLR 230 (578)
Q Consensus 177 -----~~~~~~~~~--------~~~~g-------~----~~--~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlR 230 (578)
......+.. ....| + +. .....++|||+.++. ..+.++++.|++++|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~------~~~~~~~~~G~~e~w~ 439 (523)
T PRK10965 366 QMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDM------NKPMFAAKKGQYERWV 439 (523)
T ss_pred hhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECCC------CCcceecCCCCEEEEE
Confidence 000000000 00000 0 00 000124899998641 3466899999999999
Q ss_pred EEecCCCCeEEEEEcCceEEEEeecCCccc---ceEecEEEeCCCceEEEEEEcCCCC-CCCceEEEEeec
Q 008090 231 LINAALNDELFFSIANHTLTVVEADAVYVK---PFDTDKLLITPGQTANVLLRTKPYF-PNATFFMQARPY 297 (578)
Q Consensus 231 liN~~~~~~~~~~l~gh~~~via~DG~~v~---P~~~d~v~l~pgeR~dv~v~~~~~~-~~g~y~l~~~~~ 297 (578)
|+|.+....+.|||||+.|+|++.||.+.. +.+.|||.+.+ ++++++++++.+. ..|.|++|||.+
T Consensus 440 i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL 509 (523)
T PRK10965 440 ISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLL 509 (523)
T ss_pred EEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCch
Confidence 999996555669999999999999999764 45789999977 8899999998531 127999999964
No 25
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.51 E-value=1.3e-13 Score=119.40 Aligned_cols=116 Identities=21% Similarity=0.218 Sum_probs=89.0
Q ss_pred HHHHHHHhccccccceeEEEEEEEE--EEee-e--cCceeeeEE-EECCCCCCcEEEEecCCEEEEEEEeCCCCce--eE
Q 008090 17 LGLCFLALLPEFAAGITRHYTFNIK--YHNV-T--RLCHTRNII-SVNGQFPGPSLVAREGDRVLIKVTNHVSNNV--TI 88 (578)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~-~--~~g~~~~~~-~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~--si 88 (578)
+.+.+.+++...+.|+.|+|+++|+ ++.+ . ..|+....+ ++|+++..+.|+|++||+|+++++|..+.++ .+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i 87 (135)
T TIGR03096 8 AGFALGLLLMGTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSI 87 (135)
T ss_pred HHHHHHHhhccchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEE
Confidence 4444445566678889999999999 6666 3 467777776 9999999899999999999999999986543 23
Q ss_pred EEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCcchhcccceeeE
Q 008090 89 HWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLRSTLYGPI 148 (578)
Q Consensus 89 H~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~l 148 (578)
+++|+ +..|.||++.+|+|.+ .++|+|||||..+....-|-|.|
T Consensus 88 ~~~gi---------------s~~I~pGet~TitF~a-dKpG~Y~y~C~~HP~~~H~~~~~ 131 (135)
T TIGR03096 88 DAYGI---------------SEVIKAGETKTISFKA-DKAGAFTIWCQLHPKNIHLPGSL 131 (135)
T ss_pred CCCCc---------------ceEECCCCeEEEEEEC-CCCEEEEEeCCCCChhhcCCCcc
Confidence 22221 2458999999999996 89999999999887554444443
No 26
>PLN02835 oxidoreductase
Probab=99.45 E-value=5.1e-12 Score=137.44 Aligned_cols=239 Identities=13% Similarity=0.124 Sum_probs=150.3
Q ss_pred eeEEEECCCCCCcEEEEecCCEEEEEEEeCCC-CceeEEEeeeeeccCCCCCCCCC----ccccccCCCCeEEEEEEEcC
Q 008090 52 RNIISVNGQFPGPSLVAREGDRVLIKVTNHVS-NNVTIHWHGVRQVTSGWADGPAY----VTQCPIQTGQSYTYNFTITG 126 (578)
Q Consensus 52 ~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DG~~~----~~q~~i~pG~~~~y~f~~~~ 126 (578)
...+++||+.. +++.|++|+++|+||.|... ....+|..|......+ .||.+- +....|.||||++.-+++.+
T Consensus 191 ~d~~liNG~~~-~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~-~DG~~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 191 PDGVLINGQTQ-STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVE-VEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred CceEEEccccC-ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEE-ECCccCCCceeeEEEECcCceEEEEEEcCC
Confidence 46789999964 89999999999999999984 5788999998887655 899642 34567999999999999866
Q ss_pred CCCceeeecCcchhc--ccceeeEEEeCCCC---CCCCC-CCCCC--------cEeEEeeecccCChH---HHH-----H
Q 008090 127 QRGTLLWHAHISWLR--STLYGPIIILPKRN---ESYPF-QKPHK--------EIPILFGEWFNVDPE---AII-----S 184 (578)
Q Consensus 127 ~~Gt~wYH~H~~~~~--~Gl~G~liV~~~~~---~~~p~-~~~~~--------e~~l~~~d~~~~~~~---~~~-----~ 184 (578)
.+|.||.+.-..... ....+.|-.+.... .+.|. +..+. .....+......... ... .
T Consensus 269 ~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 348 (539)
T PLN02835 269 SPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPT 348 (539)
T ss_pred CCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCC
Confidence 689999885321111 12233333333211 01111 00000 000001100000000 000 0
Q ss_pred HHH-hcCCCC--CCCceEEEcCccCCCcc---------------cC-------C-----CCeeEEEEeCCcEEEEEEEec
Q 008090 185 QAL-QTGAGP--NVSDAYTINGLPGPLYN---------------CS-------S-----KDTYKLKVKPGKTYLLRLINA 234 (578)
Q Consensus 185 ~~~-~~g~~~--~~~~~~liNG~~~~~~~---------------~~-------~-----~~~~~l~v~~G~~~rlRliN~ 234 (578)
... ...... .....|.+||.++.... |. . ...-.+.++.|+++.|-|-|.
T Consensus 349 ~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~ 428 (539)
T PLN02835 349 KTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNN 428 (539)
T ss_pred ceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECC
Confidence 000 000000 00135788988763210 00 0 011245678899999999998
Q ss_pred CCCCeEEEEEcCceEEEEee-cCCc----------ccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEee
Q 008090 235 ALNDELFFSIANHTLTVVEA-DAVY----------VKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 235 ~~~~~~~~~l~gh~~~via~-DG~~----------v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
+...|. ||||||.|+|++. +|.+ ..|...|++.+.++..+-+.|++++| |.|.+|||.
T Consensus 429 ~~~~HP-~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNP---G~Wl~HCHi 497 (539)
T PLN02835 429 EKTMQS-WHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQ---GMWNMRSAI 497 (539)
T ss_pred CCCCCC-CCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcCC---EEeeeeecc
Confidence 765555 9999999999987 5522 24889999999999999999999999 999999996
No 27
>PRK10883 FtsI repressor; Provisional
Probab=99.44 E-value=6e-12 Score=135.11 Aligned_cols=220 Identities=13% Similarity=0.113 Sum_probs=136.1
Q ss_pred eeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCC-CceeEEE-eeeeeccCCCCCCCC-----CccccccCCCCeEEEEE
Q 008090 50 HTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVS-NNVTIHW-HGVRQVTSGWADGPA-----YVTQCPIQTGQSYTYNF 122 (578)
Q Consensus 50 ~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~siH~-HG~~~~~~~~~DG~~-----~~~q~~i~pG~~~~y~f 122 (578)
....++++||+. .|.|.|++| ++|+||.|... ....+++ +|......+ .||-+ .+.+..|.||||++.-+
T Consensus 207 ~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa-~DGg~~~~P~~~~~l~l~pGeR~dvlV 283 (471)
T PRK10883 207 FVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIA-GDQGFLPAPVSVKQLSLAPGERREILV 283 (471)
T ss_pred ccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEE-eCCCcccCCcEeCeEEECCCCeEEEEE
Confidence 445679999995 699999875 89999999984 6678888 666544444 78632 13567799999999999
Q ss_pred EEcCCCCceeeecCcch-hccccee------------eEEEeCCCC---CCCCCCCCCCcEeEEeeecccCChHHHHHHH
Q 008090 123 TITGQRGTLLWHAHISW-LRSTLYG------------PIIILPKRN---ESYPFQKPHKEIPILFGEWFNVDPEAIISQA 186 (578)
Q Consensus 123 ~~~~~~Gt~wYH~H~~~-~~~Gl~G------------~liV~~~~~---~~~p~~~~~~e~~l~~~d~~~~~~~~~~~~~ 186 (578)
++ .+.+.+.+++-... ....+.+ .+-+++... ...+.+....... + ........ ..
T Consensus 284 d~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~--~---~~~~~~~~-~~- 355 (471)
T PRK10883 284 DM-SNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPLVTDNLPMRLLPDE--I---MEGSPIRS-RE- 355 (471)
T ss_pred EC-CCCceEEEECCCccccccccccccCCccccccceeEEEEccccccCCCCcCChhhcCCC--C---CCCCCcce-EE-
Confidence 97 45566666653111 0011111 111212110 0000000000000 0 00000000 00
Q ss_pred HhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccc---eE
Q 008090 187 LQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKP---FD 263 (578)
Q Consensus 187 ~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P---~~ 263 (578)
..-+ .+.++|||+.++. ....+.++.|++++|+|.|.. .+.||||||.|+|++.||....| -+
T Consensus 356 ~~l~-----~~~~~INg~~~~~------~~~~~~~~~g~~e~W~~~n~~---~HP~HlHg~~FqVl~~~G~~~~~~~~gw 421 (471)
T PRK10883 356 ISLG-----DDLPGINGALWDM------NRIDVTAQQGTWERWTVRADM---PQAFHIEGVMFLIRNVNGAMPFPEDRGW 421 (471)
T ss_pred EEec-----CCcCccCCcccCC------CcceeecCCCCEEEEEEECCC---CcCEeECCccEEEEEecCCCCCccccCc
Confidence 0000 1234799998642 234578999999999998863 35599999999999999985533 45
Q ss_pred ecEEEeCCCceEEEEEEcCCCCCCC---ceEEEEeecC
Q 008090 264 TDKLLITPGQTANVLLRTKPYFPNA---TFFMQARPYF 298 (578)
Q Consensus 264 ~d~v~l~pgeR~dv~v~~~~~~~~g---~y~l~~~~~~ 298 (578)
.|||.+ + +++.|+++++.+. + .|++|||.+.
T Consensus 422 kDTV~v-~-~~v~i~~~f~~~~--~~~~~~m~HCHiLe 455 (471)
T PRK10883 422 KDTVWV-D-GQVELLVYFGQPS--WAHFPFLFYSQTLE 455 (471)
T ss_pred CcEEEc-C-CeEEEEEEecCCC--CCCCcEEeeccccc
Confidence 799999 3 5799999999863 3 7999999643
No 28
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.43 E-value=1.2e-11 Score=135.48 Aligned_cols=240 Identities=15% Similarity=0.158 Sum_probs=147.0
Q ss_pred eEEEECCCC-C--------CcEEEEecCCEEEEEEEeCC-CCceeEEEeeeeeccCCCCCCCC---C-ccccccCCCCeE
Q 008090 53 NIISVNGQF-P--------GPSLVAREGDRVLIKVTNHV-SNNVTIHWHGVRQVTSGWADGPA---Y-VTQCPIQTGQSY 118 (578)
Q Consensus 53 ~~~~~Ng~~-p--------gP~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~~DG~~---~-~~q~~i~pG~~~ 118 (578)
..+++||+. + .++|+|++|+++|+||.|.. .....+|.+|......+ .||++ . +....|.||||+
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa-~DG~~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVE-VDATYTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEE-eCCcccCceEeCeEEecCCCEE
Confidence 568999984 1 14899999999999999997 45578888888777665 89964 2 345779999999
Q ss_pred EEEEEEcCCCCceeeecCcchh-----c-ccceeeEEEeCCCCCCCCCC----CCCCc---------EeEEe-ee--cc-
Q 008090 119 TYNFTITGQRGTLLWHAHISWL-----R-STLYGPIIILPKRNESYPFQ----KPHKE---------IPILF-GE--WF- 175 (578)
Q Consensus 119 ~y~f~~~~~~Gt~wYH~H~~~~-----~-~Gl~G~liV~~~~~~~~p~~----~~~~e---------~~l~~-~d--~~- 175 (578)
+..+++.+.+|.||.+.+.... . ....+.|..++......+.. ..+.. ..-+. .. ..
T Consensus 246 dVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANV 325 (539)
T ss_pred EEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCC
Confidence 9999985558999999874211 1 11233333333221111100 00000 00000 00 00
Q ss_pred cCChHH----HHHHHHhcC------CCCCCCceEEEcCccCCCc--------------------c-------c-CCC---
Q 008090 176 NVDPEA----IISQALQTG------AGPNVSDAYTINGLPGPLY--------------------N-------C-SSK--- 214 (578)
Q Consensus 176 ~~~~~~----~~~~~~~~g------~~~~~~~~~liNG~~~~~~--------------------~-------~-~~~--- 214 (578)
...... .+....... ......-.+.|||+++... . | ++.
T Consensus 326 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 405 (539)
T TIGR03389 326 PVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLP 405 (539)
T ss_pred CCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcc
Confidence 000000 000000000 0000112457888753200 0 0 000
Q ss_pred -------CeeEEEEeCCcEEEEEEEecCC--CCeEEEEEcCceEEEEeec-CCc-----------ccceEecEEEeCCCc
Q 008090 215 -------DTYKLKVKPGKTYLLRLINAAL--NDELFFSIANHTLTVVEAD-AVY-----------VKPFDTDKLLITPGQ 273 (578)
Q Consensus 215 -------~~~~l~v~~G~~~rlRliN~~~--~~~~~~~l~gh~~~via~D-G~~-----------v~P~~~d~v~l~pge 273 (578)
....+.++.|+++++.|.|.+. ...+.||||||.|+|++.+ |.+ ..|...|++.+.++.
T Consensus 406 ~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g 485 (539)
T TIGR03389 406 NNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGG 485 (539)
T ss_pred cccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCc
Confidence 1235788899999999999853 2245599999999999886 322 247778999999999
Q ss_pred eEEEEEEcCCCCCCCceEEEEee
Q 008090 274 TANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 274 R~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
.+-|.|++++| |.|.+|||.
T Consensus 486 ~vvirf~adNP---G~W~~HCHi 505 (539)
T TIGR03389 486 WAAIRFVADNP---GVWFMHCHL 505 (539)
T ss_pred eEEEEEecCCC---eEEEEEecc
Confidence 99999999999 999999995
No 29
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.33 E-value=4.1e-11 Score=129.02 Aligned_cols=233 Identities=19% Similarity=0.160 Sum_probs=150.3
Q ss_pred ceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCC-CCceeEEEeeeeeccCCCCCCCC----CccccccCCCCeEEEEEE
Q 008090 49 CHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHV-SNNVTIHWHGVRQVTSGWADGPA----YVTQCPIQTGQSYTYNFT 123 (578)
Q Consensus 49 g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~~DG~~----~~~q~~i~pG~~~~y~f~ 123 (578)
+.......+||+.. | +...++..+++||.|.. .+...+++.|....... .||.+ .+.+..+.|||+++...+
T Consensus 186 ~~~g~~~~vnG~~~-p-~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~-~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAIL-P-FKAVPGGVVRLRLLNAGNARTYHLALGGGPLTVIA-VDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCcc-c-eeecCCCeEEEEEEecCCceEEEEEecCceEEEEE-eCCcCcCceeeeeEEecCcceEEEEEE
Confidence 45667788888542 4 44555555999999998 77788888877776655 79865 466788999999999998
Q ss_pred EcCCCCceeeecCcchhcccceeeEEEeCCCCCCCCC-------CCC---CCcEeEEeeecccCChHHHHHHHHhcCCCC
Q 008090 124 ITGQRGTLLWHAHISWLRSTLYGPIIILPKRNESYPF-------QKP---HKEIPILFGEWFNVDPEAIISQALQTGAGP 193 (578)
Q Consensus 124 ~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~p~-------~~~---~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~ 193 (578)
. ...|++-+.+.......-+.+..-.........+. +.. +............+............ ..
T Consensus 263 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~ 339 (451)
T COG2132 263 M-NDGGAVTLTALGEDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLI--GG 339 (451)
T ss_pred c-CCCCeEEEEeccccCCceeeeeeccccccccccccccccccCCCcchhhccccccchhhcCCCcccccccchhh--cc
Confidence 7 45789988887722112222221111111000000 001 11111111111111110000000000 11
Q ss_pred CCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcc--cceEecEEEeCC
Q 008090 194 NVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYV--KPFDTDKLLITP 271 (578)
Q Consensus 194 ~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v--~P~~~d~v~l~p 271 (578)
.....+.+||+.++. ....+.++.|+++||+|.|-+...| .||+||+.|.|++.|...- .+.+.|++.+.|
T Consensus 340 ~~~~~~~~n~~~~~~------~~~~~~~~~G~~~~~~i~n~~~~~H-P~HlHg~~F~v~~~~~~~~~~~~~~kDTv~v~~ 412 (451)
T COG2132 340 IGGYVWAINGKAFDD------NRVTLIAKAGTRERWVLTNDTPMPH-PFHLHGHFFQVLSGDAPAPGAAPGWKDTVLVAP 412 (451)
T ss_pred cccccccccCccCCC------CcCceeecCCCEEEEEEECCCCCcc-CeEEcCceEEEEecCCCcccccCccceEEEeCC
Confidence 123568899987642 2467899999999999999998555 5999999999999992221 467899999999
Q ss_pred CceEEEEEEcCCCCCCCceEEEEeec
Q 008090 272 GQTANVLLRTKPYFPNATFFMQARPY 297 (578)
Q Consensus 272 geR~dv~v~~~~~~~~g~y~l~~~~~ 297 (578)
++++.+.++++.+ |.|++|||..
T Consensus 413 ~~~~~v~~~a~~~---g~~~~HCH~l 435 (451)
T COG2132 413 GERLLVRFDADYP---GPWMFHCHIL 435 (451)
T ss_pred CeEEEEEEeCCCC---CceEEeccch
Confidence 9999999999998 8999999963
No 30
>PLN02168 copper ion binding / pectinesterase
Probab=99.26 E-value=5.6e-10 Score=121.30 Aligned_cols=240 Identities=14% Similarity=0.127 Sum_probs=146.7
Q ss_pred eeEEEECCCCC-CcEEEEecCCEEEEEEEeCCC-CceeEEEeeeeeccCCCCCCCC----CccccccCCCCeEEEEEEEc
Q 008090 52 RNIISVNGQFP-GPSLVAREGDRVLIKVTNHVS-NNVTIHWHGVRQVTSGWADGPA----YVTQCPIQTGQSYTYNFTIT 125 (578)
Q Consensus 52 ~~~~~~Ng~~p-gP~i~v~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DG~~----~~~q~~i~pG~~~~y~f~~~ 125 (578)
...+++||+.+ .|+|.|++|+++|+|+.|... ....++..|......+ .||.+ .+.+..|.||||++.-+++.
T Consensus 188 ~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydvlv~a~ 266 (545)
T PLN02168 188 PDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVE-TEGTYVQKRVYSSLDIHVGQSYSVLVTAK 266 (545)
T ss_pred CCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEE-ECCeECCCceeeEEEEcCCceEEEEEEcC
Confidence 35689999952 479999999999999999874 4678888888877665 89953 24567899999999999985
Q ss_pred CCC-C---ceeeecCcch--hcccceeeEEEeCCCCCC-CCCC---CC-CC----cEeEEe----eecccCChHH----H
Q 008090 126 GQR-G---TLLWHAHISW--LRSTLYGPIIILPKRNES-YPFQ---KP-HK----EIPILF----GEWFNVDPEA----I 182 (578)
Q Consensus 126 ~~~-G---t~wYH~H~~~--~~~Gl~G~liV~~~~~~~-~p~~---~~-~~----e~~l~~----~d~~~~~~~~----~ 182 (578)
+++ | .||.+.-... ....-.|.|--+.+.... .|.+ .. +. +....+ .......... .
T Consensus 267 ~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~ 346 (545)
T PLN02168 267 TDPVGIYRSYYIVATARFTDAYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHY 346 (545)
T ss_pred CCCCCCcceEEEEEEecccCCCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccccc
Confidence 343 4 7998766421 111122333332221110 1111 00 00 110000 0000000000 0
Q ss_pred ----HHHHH-hcCCC--CCCCceEEEcCccCCC----------cc-----cCC--C----------CeeEEEEeCCcEEE
Q 008090 183 ----ISQAL-QTGAG--PNVSDAYTINGLPGPL----------YN-----CSS--K----------DTYKLKVKPGKTYL 228 (578)
Q Consensus 183 ----~~~~~-~~g~~--~~~~~~~liNG~~~~~----------~~-----~~~--~----------~~~~l~v~~G~~~r 228 (578)
..... ..... ......+.|||.++.. +. .++ . ..-.+.++.|++|.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~Ve 426 (545)
T PLN02168 347 GRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYH 426 (545)
T ss_pred cccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEEE
Confidence 00000 00000 0001357889887631 00 000 0 12346788899999
Q ss_pred EEEEecCCCCeEEEEEcCceEEEEeec-C----------CcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEee
Q 008090 229 LRLINAALNDELFFSIANHTLTVVEAD-A----------VYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 229 lRliN~~~~~~~~~~l~gh~~~via~D-G----------~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
+-|-|.....| .||||||.|+|++.- | ++..|...|++.+.++.-+-|.|++++| |.|.+|||.
T Consensus 427 iViqn~~~~~H-P~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNP---G~Wl~HCHi 501 (545)
T PLN02168 427 IVFQNPLFSLE-SYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQ---GMWNVRSQK 501 (545)
T ss_pred EEEeCCCCCCC-CeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCC---eEEeeeecC
Confidence 99988765444 599999999999762 1 2246888999999999999999999999 999999994
No 31
>PLN02991 oxidoreductase
Probab=99.23 E-value=1.3e-09 Score=118.25 Aligned_cols=241 Identities=10% Similarity=0.060 Sum_probs=147.2
Q ss_pred eeeEEEECCCCCCcEEEEecCCEEEEEEEeCCC-CceeEEEeeeeeccCCCCCCCC----CccccccCCCCeEEEEEEEc
Q 008090 51 TRNIISVNGQFPGPSLVAREGDRVLIKVTNHVS-NNVTIHWHGVRQVTSGWADGPA----YVTQCPIQTGQSYTYNFTIT 125 (578)
Q Consensus 51 ~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DG~~----~~~q~~i~pG~~~~y~f~~~ 125 (578)
....+++||+...+++.|++|+++|+||.|... ....++..|......+ .||.+ .+.+..|.||||++.-.++.
T Consensus 189 ~~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~~~p~~~~~l~i~~GQRydvlv~a~ 267 (543)
T PLN02991 189 LPDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVE-VEGTHTIQTPFSSLDVHVGQSYSVLITAD 267 (543)
T ss_pred CCCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEE-eCCccccceeeeEEEEcCCcEEEEEEECC
Confidence 346789999965589999999999999999884 4578888888877665 89964 24567799999999999986
Q ss_pred CCCCceeeecCcchhcc--cceeeEEEeCCCCCC-CCCCC--CCCcEeEEee---eccc-----CC---h-HHH----HH
Q 008090 126 GQRGTLLWHAHISWLRS--TLYGPIIILPKRNES-YPFQK--PHKEIPILFG---EWFN-----VD---P-EAI----IS 184 (578)
Q Consensus 126 ~~~Gt~wYH~H~~~~~~--Gl~G~liV~~~~~~~-~p~~~--~~~e~~l~~~---d~~~-----~~---~-~~~----~~ 184 (578)
+..|.||.-.-...... .-.+.|--+...... .+.+. .+.+...-.. ++.. .. . ... +.
T Consensus 268 ~~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~ 347 (543)
T PLN02991 268 QPAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINIT 347 (543)
T ss_pred CCCCcEEEEEeeccCCCCcceEEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccc
Confidence 66889997654311111 112333332221100 01110 0000000000 0000 00 0 000 00
Q ss_pred HHH-hcCCCC--CCCceEEEcCccCCC----------cccCC-----------------CCeeEEEEeCCcEEEEEEEec
Q 008090 185 QAL-QTGAGP--NVSDAYTINGLPGPL----------YNCSS-----------------KDTYKLKVKPGKTYLLRLINA 234 (578)
Q Consensus 185 ~~~-~~g~~~--~~~~~~liNG~~~~~----------~~~~~-----------------~~~~~l~v~~G~~~rlRliN~ 234 (578)
... ...... ...-.+.|||.++.. ++.++ ...-.+.++.|+++.+-|-|.
T Consensus 348 ~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~ 427 (543)
T PLN02991 348 RTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENW 427 (543)
T ss_pred eeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCC
Confidence 000 000000 001256788877531 00000 011235678888999999887
Q ss_pred CCCCeEEEEEcCceEEEEeec-CC----------cccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEee
Q 008090 235 ALNDELFFSIANHTLTVVEAD-AV----------YVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 235 ~~~~~~~~~l~gh~~~via~D-G~----------~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
....| .||||||.|+|++.. |. ++.|...|++.+.++.-+-|.|++++| |-|.+|||-
T Consensus 428 ~~~~H-P~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNP---G~W~~HCHi 496 (543)
T PLN02991 428 EDIVQ-TWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNV---GMWNLRSEL 496 (543)
T ss_pred CCCCC-CeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCCC---EEeeeeeCc
Confidence 65544 499999999999754 21 235888999999999999999999999 999999996
No 32
>PLN02354 copper ion binding / oxidoreductase
Probab=99.22 E-value=1.1e-09 Score=119.59 Aligned_cols=239 Identities=12% Similarity=0.111 Sum_probs=148.7
Q ss_pred eEEEECCCCC------CcEEEEecCCEEEEEEEeCC-CCceeEEEeeeeeccCCCCCCCC----CccccccCCCCeEEEE
Q 008090 53 NIISVNGQFP------GPSLVAREGDRVLIKVTNHV-SNNVTIHWHGVRQVTSGWADGPA----YVTQCPIQTGQSYTYN 121 (578)
Q Consensus 53 ~~~~~Ng~~p------gP~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~~DG~~----~~~q~~i~pG~~~~y~ 121 (578)
..+++||+.. -|+|.|++|++.|+||.|.. .....++..|......+ .||++ .+....|.||||++.-
T Consensus 190 d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydVl 268 (552)
T PLN02354 190 DGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVE-MEGSHVLQNDYDSLDVHVGQCFSVL 268 (552)
T ss_pred CeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEE-eCCcccCCcceeEEEEccCceEEEE
Confidence 5789999841 27999999999999999998 56788999998877665 89964 2345679999999999
Q ss_pred EEEcCCCCceeeecCcchhc--ccceeeEEEeCCCCCC---CCCCCCCC--------cEeEEeeecccCC---hHHH---
Q 008090 122 FTITGQRGTLLWHAHISWLR--STLYGPIIILPKRNES---YPFQKPHK--------EIPILFGEWFNVD---PEAI--- 182 (578)
Q Consensus 122 f~~~~~~Gt~wYH~H~~~~~--~Gl~G~liV~~~~~~~---~p~~~~~~--------e~~l~~~d~~~~~---~~~~--- 182 (578)
+++.+.+|.||......... ....|.|..+...... .|....+. +...-+....... ....
T Consensus 269 v~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~ 348 (552)
T PLN02354 269 VTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGK 348 (552)
T ss_pred EECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCcccccc
Confidence 99866689999987743211 2223444443322100 11000000 0000000000000 0000
Q ss_pred H--HHH--HhcCC-CCCCCceEEEcCccCCCcc----------cC-C-------------------CCeeEEEEeCCcEE
Q 008090 183 I--SQA--LQTGA-GPNVSDAYTINGLPGPLYN----------CS-S-------------------KDTYKLKVKPGKTY 227 (578)
Q Consensus 183 ~--~~~--~~~g~-~~~~~~~~liNG~~~~~~~----------~~-~-------------------~~~~~l~v~~G~~~ 227 (578)
. ... ..... .....-.+.|||.++.... .. + ...-.+.++.|+++
T Consensus 349 ~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~V 428 (552)
T PLN02354 349 INITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFV 428 (552)
T ss_pred ccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCEE
Confidence 0 000 00000 0000134678887653100 00 0 01124577888999
Q ss_pred EEEEEecCCCCeEEEEEcCceEEEEeecC-----------CcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEee
Q 008090 228 LLRLINAALNDELFFSIANHTLTVVEADA-----------VYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 228 rlRliN~~~~~~~~~~l~gh~~~via~DG-----------~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
.+-|.|.....|. ||||||.|+|++..- ++..|...|++.+.++.-+-+.|++++| |-|.+|||.
T Consensus 429 eiVi~n~~~~~HP-~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNP---GvW~~HCHi 504 (552)
T PLN02354 429 EIIFENHEKSMQS-WHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNA---GMWNIRSEN 504 (552)
T ss_pred EEEEeCCCCCCCC-CcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecCC---eEEeeeccc
Confidence 9999998655554 999999999997652 1235888999999999999999999999 999999995
No 33
>PLN02792 oxidoreductase
Probab=99.21 E-value=1.8e-09 Score=117.32 Aligned_cols=241 Identities=12% Similarity=0.093 Sum_probs=146.9
Q ss_pred eeeEEEECCCCC--CcEEEEecCCEEEEEEEeCC-CCceeEEEeeeeeccCCCCCCCC----CccccccCCCCeEEEEEE
Q 008090 51 TRNIISVNGQFP--GPSLVAREGDRVLIKVTNHV-SNNVTIHWHGVRQVTSGWADGPA----YVTQCPIQTGQSYTYNFT 123 (578)
Q Consensus 51 ~~~~~~~Ng~~p--gP~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~~DG~~----~~~q~~i~pG~~~~y~f~ 123 (578)
....+++||+-. .++|.|++|+++++||.|.. .....++..|......+ .||.+ .+....|.||||++.-++
T Consensus 178 ~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~-~DG~~v~p~~~~~l~i~~GqRydVlV~ 256 (536)
T PLN02792 178 MPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIE-VEGTHTVQSMYTSLDIHVGQTYSVLVT 256 (536)
T ss_pred CCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEE-eCCccCCCcceeEEEEccCceEEEEEE
Confidence 346789999842 37899999999999999998 45678899888877665 89963 234567999999999999
Q ss_pred EcCCCCceeeecCcchhcccce--eeEEEeCCCCC-C-CC-CCC-CCCcEeEEe---eecccC-----ChH----HH--H
Q 008090 124 ITGQRGTLLWHAHISWLRSTLY--GPIIILPKRNE-S-YP-FQK-PHKEIPILF---GEWFNV-----DPE----AI--I 183 (578)
Q Consensus 124 ~~~~~Gt~wYH~H~~~~~~Gl~--G~liV~~~~~~-~-~p-~~~-~~~e~~l~~---~d~~~~-----~~~----~~--~ 183 (578)
+.+.+|.||...........+. +.|--...... . .+ .+. .+.....-. .++... ... .. +
T Consensus 257 a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 336 (536)
T PLN02792 257 MDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKM 336 (536)
T ss_pred cCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCccccccee
Confidence 8666799998765421111112 22222221110 0 00 000 000000000 000000 000 00 0
Q ss_pred H--HHH-hcCCCCC--CCceEEEcCccCCC----------cccCC------------------CCeeEEEEeCCcEEEEE
Q 008090 184 S--QAL-QTGAGPN--VSDAYTINGLPGPL----------YNCSS------------------KDTYKLKVKPGKTYLLR 230 (578)
Q Consensus 184 ~--~~~-~~g~~~~--~~~~~liNG~~~~~----------~~~~~------------------~~~~~l~v~~G~~~rlR 230 (578)
. ... ....... ..-.+.|||.++.. +.-.+ .....+.++.|++|.+-
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiV 416 (536)
T PLN02792 337 KISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEII 416 (536)
T ss_pred ccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEE
Confidence 0 000 0000000 01246788876531 00000 01234678889999999
Q ss_pred EEecCCCCeEEEEEcCceEEEEeec-C----------CcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEee
Q 008090 231 LINAALNDELFFSIANHTLTVVEAD-A----------VYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 231 liN~~~~~~~~~~l~gh~~~via~D-G----------~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
|-|.....| .||||||.|+||+.. | +++.|...|++.+.++.-+-|.|++++| |-|.+|||-
T Consensus 417 iqn~~~~~H-P~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNP---GvW~~HCh~ 489 (536)
T PLN02792 417 FQNREKIVQ-SYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNV---GMWNLRSQF 489 (536)
T ss_pred EECCCCCCC-CeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCC---EEEeeeEcc
Confidence 999765444 599999999999752 2 2336888999999999999999999999 999999984
No 34
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.19 E-value=2e-09 Score=118.01 Aligned_cols=228 Identities=14% Similarity=0.090 Sum_probs=136.1
Q ss_pred EEEEecCCEEEEEEEeCC-CCceeEEEeeeeeccCCCCCCCC----CccccccCCCCeEEEEEEEcCCC-CceeeecCcc
Q 008090 65 SLVAREGDRVLIKVTNHV-SNNVTIHWHGVRQVTSGWADGPA----YVTQCPIQTGQSYTYNFTITGQR-GTLLWHAHIS 138 (578)
Q Consensus 65 ~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~~DG~~----~~~q~~i~pG~~~~y~f~~~~~~-Gt~wYH~H~~ 138 (578)
+|.|++|+++|+||.|.. .....++++|......+ .||.+ .+....|.||||++.-+++.+.+ |.||.+.-..
T Consensus 204 ~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa-~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~ 282 (541)
T TIGR03388 204 ILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVE-ADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVR 282 (541)
T ss_pred EEEECCCCEEEEEEEcccccceEEEEECCCEEEEEE-eCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecc
Confidence 589999999999999987 56778888888877665 89954 23456799999999999974334 5899976543
Q ss_pred hhc--ccceeeEEEeCC-CCCCCC-C-----CCCC-------CcEeEEeeecccCChHHHHHHH--HhcCCCCCCCceEE
Q 008090 139 WLR--STLYGPIIILPK-RNESYP-F-----QKPH-------KEIPILFGEWFNVDPEAIISQA--LQTGAGPNVSDAYT 200 (578)
Q Consensus 139 ~~~--~Gl~G~liV~~~-~~~~~p-~-----~~~~-------~e~~l~~~d~~~~~~~~~~~~~--~~~g~~~~~~~~~l 200 (578)
... .....+++.... .....+ . +..+ .+..++-..-............ ............+.
T Consensus 283 ~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (541)
T TIGR03388 283 GRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTKWA 362 (541)
T ss_pred cCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEEEE
Confidence 321 111113333221 111000 0 0000 0000000000000000000000 00000000112367
Q ss_pred EcCccCCCc-------------------------ccC-------C-----CCeeEEEEeCCcEEEEEEEecCC-----CC
Q 008090 201 INGLPGPLY-------------------------NCS-------S-----KDTYKLKVKPGKTYLLRLINAAL-----ND 238 (578)
Q Consensus 201 iNG~~~~~~-------------------------~~~-------~-----~~~~~l~v~~G~~~rlRliN~~~-----~~ 238 (578)
+||.++... .+. . ...-.+.++.|++|.+.|.|.+. .-
T Consensus 363 ~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~ 442 (541)
T TIGR03388 363 INNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSE 442 (541)
T ss_pred ECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCC
Confidence 888765310 000 0 01124788899999999999752 23
Q ss_pred eEEEEEcCceEEEEeec-CCc-----------ccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEee
Q 008090 239 ELFFSIANHTLTVVEAD-AVY-----------VKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 239 ~~~~~l~gh~~~via~D-G~~-----------v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
.+.||||||+|+|++.. |.+ ..|...|++.+.++.-+-|.|++++| |.|.+|||.
T Consensus 443 ~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNP---G~W~~HCHi 509 (541)
T TIGR03388 443 THPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNP---GVWAFHCHI 509 (541)
T ss_pred CCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCC---eEeeeeccc
Confidence 45599999999999987 432 14777899999999999999999999 999999995
No 35
>PLN02604 oxidoreductase
Probab=99.18 E-value=1.1e-09 Score=120.52 Aligned_cols=229 Identities=13% Similarity=0.146 Sum_probs=137.0
Q ss_pred cEEEEecCCEEEEEEEeCC-CCceeEEEeeeeeccCCCCCCCC----CccccccCCCCeEEEEEEEcCCCC-ceeeecCc
Q 008090 64 PSLVAREGDRVLIKVTNHV-SNNVTIHWHGVRQVTSGWADGPA----YVTQCPIQTGQSYTYNFTITGQRG-TLLWHAHI 137 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~~DG~~----~~~q~~i~pG~~~~y~f~~~~~~G-t~wYH~H~ 137 (578)
++|.|++|+++|+||.|.. .....++..|......+ .||.+ .+....|.||||++.-+++.+.+| .||-....
T Consensus 224 ~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa-~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~ 302 (566)
T PLN02604 224 YVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVE-ADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSV 302 (566)
T ss_pred eEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEE-eCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEec
Confidence 4899999999999999997 45777888888776665 89954 244677999999999999754455 79988543
Q ss_pred chh---cccceeeEEEeCCCC-CCCCCCCCC----CcEeEEeee---------cccCChHHHHHH--HHhcCCCCCCCce
Q 008090 138 SWL---RSTLYGPIIILPKRN-ESYPFQKPH----KEIPILFGE---------WFNVDPEAIISQ--ALQTGAGPNVSDA 198 (578)
Q Consensus 138 ~~~---~~Gl~G~liV~~~~~-~~~p~~~~~----~e~~l~~~d---------~~~~~~~~~~~~--~~~~g~~~~~~~~ 198 (578)
... ...-.+.|-.++... ...+..... .+....+.. ............ .............
T Consensus 303 ~~~~~~~~~~~aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 382 (566)
T PLN02604 303 VSRNNTTPPGLAIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNEVNGYRR 382 (566)
T ss_pred ccCCCCCcceeEEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccccccCCeEE
Confidence 221 111122222222111 100100000 000000000 000000000000 0000000000135
Q ss_pred EEEcCccCCCcc---------------cCC-----------------------CCeeEEEEeCCcEEEEEEEecCC----
Q 008090 199 YTINGLPGPLYN---------------CSS-----------------------KDTYKLKVKPGKTYLLRLINAAL---- 236 (578)
Q Consensus 199 ~liNG~~~~~~~---------------~~~-----------------------~~~~~l~v~~G~~~rlRliN~~~---- 236 (578)
|.|||.++.... |.. .....+.++.|++|.+.|.|...
T Consensus 383 w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~ 462 (566)
T PLN02604 383 WSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNAN 462 (566)
T ss_pred EEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCC
Confidence 788887653100 000 01124788999999999999853
Q ss_pred -CCeEEEEEcCceEEEEeec-CCc-----------ccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEee
Q 008090 237 -NDELFFSIANHTLTVVEAD-AVY-----------VKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 237 -~~~~~~~l~gh~~~via~D-G~~-----------v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
...+.||||||+|+|++.. |.+ ..|...|++.+.++.-+-|.|++++| |.|.+|||.
T Consensus 463 ~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNP---G~WlfHCHI 532 (566)
T PLN02604 463 NSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNP---GVWAFHCHI 532 (566)
T ss_pred CCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCC---eEeeEeecc
Confidence 2345699999999999987 432 13777899999999999999999999 999999995
No 36
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=99.18 E-value=1.2e-09 Score=119.45 Aligned_cols=239 Identities=15% Similarity=0.157 Sum_probs=143.6
Q ss_pred eEEEECCCC---------------CCcEEEEecCCEEEEEEEeCCC-CceeEEEeeee-eccCCCCCCCC----Cccccc
Q 008090 53 NIISVNGQF---------------PGPSLVAREGDRVLIKVTNHVS-NNVTIHWHGVR-QVTSGWADGPA----YVTQCP 111 (578)
Q Consensus 53 ~~~~~Ng~~---------------pgP~i~v~~Gd~v~v~l~N~l~-~~~siH~HG~~-~~~~~~~DG~~----~~~q~~ 111 (578)
..+++||+. ..|+|+|++|+++|+||.|... ....+++.|.. ....+ .||.+ .+....
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa-~DG~~~~P~~v~~l~ 250 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIE-ADGSYTKPAKIDHLQ 250 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEE-eCCCCCCceEeCeEE
Confidence 467899983 1278999999999999999984 45788888877 65554 89964 134567
Q ss_pred cCCCCeEEEEEEEcCC-------CCceeeecCcchhcc--cceeeEEEeCCCCCCCC---CC---CCC------CcEeE-
Q 008090 112 IQTGQSYTYNFTITGQ-------RGTLLWHAHISWLRS--TLYGPIIILPKRNESYP---FQ---KPH------KEIPI- 169 (578)
Q Consensus 112 i~pG~~~~y~f~~~~~-------~Gt~wYH~H~~~~~~--Gl~G~liV~~~~~~~~p---~~---~~~------~e~~l- 169 (578)
|.||||++..+++.+. +|-||-..-...... ...|.|.-+.......+ .. ... .+.-+
T Consensus 251 l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~ 330 (538)
T TIGR03390 251 LGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYELE 330 (538)
T ss_pred EccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhheeeE
Confidence 9999999999998432 488997654321111 12344433222111111 00 000 01100
Q ss_pred Eeeeccc---CChHHHHHHH--HhcCC--CC-CCCceEEEcCccCCC--cc---------c----------------CCC
Q 008090 170 LFGEWFN---VDPEAIISQA--LQTGA--GP-NVSDAYTINGLPGPL--YN---------C----------------SSK 214 (578)
Q Consensus 170 ~~~d~~~---~~~~~~~~~~--~~~g~--~~-~~~~~~liNG~~~~~--~~---------~----------------~~~ 214 (578)
.+..-.. ...... +.. ...+. .. .....+++||.++.. .. . ...
T Consensus 331 pl~~~~~~~~~~~~~~-d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (538)
T TIGR03390 331 PLSEENNQDFPTLDEV-TRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFDP 409 (538)
T ss_pred ecCccccCCCCCCCcC-ceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcCc
Confidence 0100000 000000 000 00000 00 012457899987642 00 0 000
Q ss_pred CeeEEEEeCCcEEEEEEEecC-------CCCeEEEEEcCceEEEEee-cCCc-----------ccceEecEEEeC-----
Q 008090 215 DTYKLKVKPGKTYLLRLINAA-------LNDELFFSIANHTLTVVEA-DAVY-----------VKPFDTDKLLIT----- 270 (578)
Q Consensus 215 ~~~~l~v~~G~~~rlRliN~~-------~~~~~~~~l~gh~~~via~-DG~~-----------v~P~~~d~v~l~----- 270 (578)
..-.+.++.|+++++.|.|.. ....+.||||||+|+||+. +|.+ ..|...|++.+.
T Consensus 410 ~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~ 489 (538)
T TIGR03390 410 ETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVK 489 (538)
T ss_pred CceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeecccccc
Confidence 112567889999999999974 2345569999999999985 4532 248889999984
Q ss_pred -----CCceEEEEEEcCCCCCCCceEEEEee
Q 008090 271 -----PGQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 271 -----pgeR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
++.-+.|.+++++| |.|.+|||.
T Consensus 490 ~~~~~~~~~~~ir~~~dNP---G~W~~HCHi 517 (538)
T TIGR03390 490 VVPGAPAGWRAWRIRVTNP---GVWMMHCHI 517 (538)
T ss_pred ccccCCCceEEEEEEcCCC---eeEEEeccc
Confidence 78889999999998 999999995
No 37
>PLN02191 L-ascorbate oxidase
Probab=99.03 E-value=1.7e-08 Score=110.98 Aligned_cols=234 Identities=13% Similarity=0.104 Sum_probs=137.3
Q ss_pred ECCCCCCcEEEEecCCEEEEEEEeCC-CCceeEEEeeeeeccCCCCCCCCC----ccccccCCCCeEEEEEEEcCCC-Cc
Q 008090 57 VNGQFPGPSLVAREGDRVLIKVTNHV-SNNVTIHWHGVRQVTSGWADGPAY----VTQCPIQTGQSYTYNFTITGQR-GT 130 (578)
Q Consensus 57 ~Ng~~pgP~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~~DG~~~----~~q~~i~pG~~~~y~f~~~~~~-Gt 130 (578)
+||+.-.+++.|++|++.|+||.|.. .....+++.|......+ .||.+- +....|.||||++.-+++.+.+ +.
T Consensus 219 ~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~ 297 (574)
T PLN02191 219 EGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVE-ADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQN 297 (574)
T ss_pred cCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEE-cCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCC
Confidence 44443223799999999999999997 45777888888777665 899652 3456799999999999975445 58
Q ss_pred eeeecCcchhc----ccceeeEEEeCCCCCCCCC------CCCC-------CcEeEEeeecc-cCChHHHHHHH--HhcC
Q 008090 131 LLWHAHISWLR----STLYGPIIILPKRNESYPF------QKPH-------KEIPILFGEWF-NVDPEAIISQA--LQTG 190 (578)
Q Consensus 131 ~wYH~H~~~~~----~Gl~G~liV~~~~~~~~p~------~~~~-------~e~~l~~~d~~-~~~~~~~~~~~--~~~g 190 (578)
||-+.-..... .++ +.|--+.......|. +..+ .+..+ +.... ........+.. ....
T Consensus 298 y~ira~~~~~~~~~~~~~-ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~ 375 (574)
T PLN02191 298 YYISVGVRGRKPNTTQAL-TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKI-FSAMGSPSPPKKYRKRLILLNTQ 375 (574)
T ss_pred EEEEEEccccCCCCCCce-EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccc-cccccCCCCCCcccceEEEeccc
Confidence 99876432211 232 333332222110010 0000 00000 00000 00000000000 0000
Q ss_pred CCCCCCceEEEcCccCCCcccC-------------------------------------CCCeeEEEEeCCcEEEEEEEe
Q 008090 191 AGPNVSDAYTINGLPGPLYNCS-------------------------------------SKDTYKLKVKPGKTYLLRLIN 233 (578)
Q Consensus 191 ~~~~~~~~~liNG~~~~~~~~~-------------------------------------~~~~~~l~v~~G~~~rlRliN 233 (578)
........+.+||.++...... ....-.+.++.|+++.+-|.|
T Consensus 376 ~~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n 455 (574)
T PLN02191 376 NLIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQN 455 (574)
T ss_pred ceeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEEC
Confidence 0000012467777654200000 001124567779999999999
Q ss_pred cC-----CCCeEEEEEcCceEEEEeecC-Cc-----------ccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEee
Q 008090 234 AA-----LNDELFFSIANHTLTVVEADA-VY-----------VKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 234 ~~-----~~~~~~~~l~gh~~~via~DG-~~-----------v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
.. ....+.||||||+|+|++..- .+ ..|...|++.+.++.-+-|.|++++| |-|.+|||.
T Consensus 456 ~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNP---G~Wl~HCHi 532 (574)
T PLN02191 456 ANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNP---GVWFFHCHI 532 (574)
T ss_pred CCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCC---EEEEEecCc
Confidence 75 233455999999999997653 21 25778999999999999999999999 999999995
No 38
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.96 E-value=4.8e-09 Score=94.16 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=70.9
Q ss_pred CeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcc-----------cceEecEEEeCCCceEEEEEEcCC
Q 008090 215 DTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYV-----------KPFDTDKLLITPGQTANVLLRTKP 283 (578)
Q Consensus 215 ~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v-----------~P~~~d~v~l~pgeR~dv~v~~~~ 283 (578)
....+.++.|++++|+|+|.+.. .+.||+|||.|+|++.++... .|...|++.+.+|+++.+.+++++
T Consensus 32 ~~~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~ 110 (138)
T PF07731_consen 32 NTPVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADN 110 (138)
T ss_dssp TTSEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETS
T ss_pred CcceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeec
Confidence 45789999999999999998866 445999999999999999873 578899999999999999999997
Q ss_pred CCCCCceEEEEeec
Q 008090 284 YFPNATFFMQARPY 297 (578)
Q Consensus 284 ~~~~g~y~l~~~~~ 297 (578)
+ |.|++|||..
T Consensus 111 ~---G~w~~HCHi~ 121 (138)
T PF07731_consen 111 P---GPWLFHCHIL 121 (138)
T ss_dssp T---EEEEEEESSH
T ss_pred c---eEEEEEEchH
Confidence 7 9999999963
No 39
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.87 E-value=1.6e-07 Score=102.87 Aligned_cols=228 Identities=14% Similarity=0.105 Sum_probs=135.3
Q ss_pred cEEEEecCCEEEEEEEeCC-CCceeEEEeeeeeccCCCCCCCC----CccccccCCCCeEEEEEEEcCCCC-ceeeecCc
Q 008090 64 PSLVAREGDRVLIKVTNHV-SNNVTIHWHGVRQVTSGWADGPA----YVTQCPIQTGQSYTYNFTITGQRG-TLLWHAHI 137 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~~DG~~----~~~q~~i~pG~~~~y~f~~~~~~G-t~wYH~H~ 137 (578)
++|.|++|++.++||.|.. .....++..|......+ .||.+ .+....|.||||++.-+++.+.+| .||.-.-.
T Consensus 217 ~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa-~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~ 295 (596)
T PLN00044 217 ERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVE-AEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASA 295 (596)
T ss_pred ceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEE-eCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEec
Confidence 5899999999999999987 56777888888776655 79963 234677999999999999854455 89986432
Q ss_pred c--h----hcccceeeEEEeCCCC---CCCCC-CCCCCcEeE------Eee-----ecccCCh---HHH----HHHHH-h
Q 008090 138 S--W----LRSTLYGPIIILPKRN---ESYPF-QKPHKEIPI------LFG-----EWFNVDP---EAI----ISQAL-Q 188 (578)
Q Consensus 138 ~--~----~~~Gl~G~liV~~~~~---~~~p~-~~~~~e~~l------~~~-----d~~~~~~---~~~----~~~~~-~ 188 (578)
. . +...-.+.|--+.... .+.|. +....+... .+. ....... ... +.... .
T Consensus 296 ~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 375 (596)
T PLN00044 296 RFVDAAVVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLL 375 (596)
T ss_pred ccccCccccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeee
Confidence 1 1 1111123333222211 01111 000001000 000 0000000 000 00000 0
Q ss_pred cCC-CCCC--CceEEEcCccCCC----------cccCC-------C---------CeeEEEEeCCcEEEEEEEecCCCCe
Q 008090 189 TGA-GPNV--SDAYTINGLPGPL----------YNCSS-------K---------DTYKLKVKPGKTYLLRLINAALNDE 239 (578)
Q Consensus 189 ~g~-~~~~--~~~~liNG~~~~~----------~~~~~-------~---------~~~~l~v~~G~~~rlRliN~~~~~~ 239 (578)
.+. ...+ .-.+.|||.++.. ++.++ . ......++.+++|.+-|-|.... .
T Consensus 376 ~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~~~-~ 454 (596)
T PLN00044 376 QSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPMNRLPKLDTSIINGTYKGFMEIIFQNNATN-V 454 (596)
T ss_pred ccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCCccccccCceEEEcCCCCEEEEEEeCCCCC-C
Confidence 000 0000 1246788876531 11111 0 12345777799999999997543 4
Q ss_pred EEEEEcCceEEEEeecC-----------CcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEee
Q 008090 240 LFFSIANHTLTVVEADA-----------VYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 240 ~~~~l~gh~~~via~DG-----------~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
+.||||||.|+||+... +++.|...|++.+.+|.-.-|.|++++| |-|.+|||.
T Consensus 455 HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNP---G~W~lHCH~ 519 (596)
T PLN00044 455 QSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNA---GIWNLRVEN 519 (596)
T ss_pred CCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecCCC---EEehhhccC
Confidence 45999999999997654 2346888999999999999999999999 999999993
No 40
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.69 E-value=7.8e-08 Score=83.33 Aligned_cols=91 Identities=20% Similarity=0.265 Sum_probs=69.0
Q ss_pred eeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEc
Q 008090 453 TRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFA 532 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 532 (578)
.+++.++.|+.+++.+.|.. ...+.+|+||.+.-- . .+. +..... -.-.|.||+..+.+|++
T Consensus 25 GPtI~v~~Gd~v~i~~~N~l---~~~~siH~HG~~~~~--~---~~~---DG~~~~-------~~~~i~pG~~~~Y~~~~ 86 (117)
T PF07732_consen 25 GPTIRVREGDTVRITVTNNL---DEPTSIHWHGLHQPP--S---PWM---DGVPGV-------TQCPIAPGESFTYEFTA 86 (117)
T ss_dssp EEEEEEETTEEEEEEEEEES---SSGBSEEEETSBSTT--G---GGG---SGGTTT-------SGSSBSTTEEEEEEEEE
T ss_pred CCEEEEEcCCeeEEEEEecc---ccccccccceeeeee--e---eec---CCcccc-------cceeEEeecceeeeEee
Confidence 57899999999999999964 478999999965211 0 000 000000 01258899999999999
Q ss_pred cC-ceeeEEeeechhhhhccceEEEEEecC
Q 008090 533 DN-PGVWFMHCHLDVHTSWGLRMAWIVQNG 561 (578)
Q Consensus 533 dn-pG~wl~HCHil~H~d~GM~~~~~V~~~ 561 (578)
+. +|.|.||||...|...||.+.+.|++.
T Consensus 87 ~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 87 NQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 88 999999999999988999999999864
No 41
>PRK02710 plastocyanin; Provisional
Probab=98.56 E-value=8.9e-07 Score=77.04 Aligned_cols=73 Identities=19% Similarity=0.272 Sum_probs=53.6
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCcchhccc
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLRST 143 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~~G 143 (578)
+.|.|++||+| +++|....++++.+.|.. +. .-+...+.||++++|.|.. +|+|-|+|-.| ..+|
T Consensus 47 ~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~--------~~-~~~~~~~~pg~t~~~tF~~---~G~y~y~C~~H-~~~g 111 (119)
T PRK02710 47 STLTIKAGDTV--KWVNNKLAPHNAVFDGAK--------EL-SHKDLAFAPGESWEETFSE---AGTYTYYCEPH-RGAG 111 (119)
T ss_pred CEEEEcCCCEE--EEEECCCCCceEEecCCc--------cc-cccccccCCCCEEEEEecC---CEEEEEEcCCC-ccCC
Confidence 79999999985 567887778887765421 11 0112347899999999973 89999999832 2379
Q ss_pred ceeeEEEe
Q 008090 144 LYGPIIIL 151 (578)
Q Consensus 144 l~G~liV~ 151 (578)
|.|.|+|+
T Consensus 112 M~G~I~V~ 119 (119)
T PRK02710 112 MVGKITVE 119 (119)
T ss_pred cEEEEEEC
Confidence 99999984
No 42
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.45 E-value=3.5e-07 Score=77.73 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=44.6
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCcchhccc
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLRST 143 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~~G 143 (578)
..|++++|+.|+|+++|.....+.+...++... ..|.||++.++.|.. .++|+|=|+|-.+. .
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~-------------~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~--~- 97 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDLGIS-------------KVLPPGETATVTFTP-LKPGEYEFYCTMHP--N- 97 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEE-------------EEE-TT-EEEEEEEE--S-EEEEEB-SSS---T-
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCCceE-------------EEECCCCEEEEEEcC-CCCEEEEEEcCCCC--c-
Confidence 599999999999999999877655544443221 458999999999984 89999999999765 2
Q ss_pred ceeeEEE
Q 008090 144 LYGPIII 150 (578)
Q Consensus 144 l~G~liV 150 (578)
|.|-|||
T Consensus 98 m~G~liV 104 (104)
T PF13473_consen 98 MKGTLIV 104 (104)
T ss_dssp TB-----
T ss_pred ceecccC
Confidence 6777765
No 43
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.39 E-value=2.2e-05 Score=85.38 Aligned_cols=261 Identities=15% Similarity=0.155 Sum_probs=147.9
Q ss_pred eeEEEEEEEEEEeee---------cC--c---eeeeEEEECCCCCC-----cEEEEecCCEEEEEEEeCC-CCceeEEEe
Q 008090 32 ITRHYTFNIKYHNVT---------RL--C---HTRNIISVNGQFPG-----PSLVAREGDRVLIKVTNHV-SNNVTIHWH 91 (578)
Q Consensus 32 ~~~~~~l~~~~~~~~---------~~--g---~~~~~~~~Ng~~pg-----P~i~v~~Gd~v~v~l~N~l-~~~~siH~H 91 (578)
..++|.|.+++=.-+ .+ | ..-+..++||+-.. +++.+++|++.++|+.|.. .....+..-
T Consensus 158 pd~E~~ill~dW~~~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~F~I~ 237 (563)
T KOG1263|consen 158 PDKEFTILLGDWYKNLNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNTSLNFSIA 237 (563)
T ss_pred CCceeEEEeEeeccccCHHHHHHhhccCCCCCCCCCceEECCCCCcccCceeEEEEcCCCEEEEEEEccccccceEEEEC
Confidence 667788888742211 01 1 12467899998521 6899999999999999985 444445555
Q ss_pred eeeeccCCCCCCC---CC-ccccccCCCCeEEEEEEEcCCCCceeeecCcchhcc----cceeeEEEeCCCC-----CCC
Q 008090 92 GVRQVTSGWADGP---AY-VTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLRS----TLYGPIIILPKRN-----ESY 158 (578)
Q Consensus 92 G~~~~~~~~~DG~---~~-~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~~----Gl~G~liV~~~~~-----~~~ 158 (578)
|....... .||. |. ....-|.|||++++-.++.+.++.||+-...-.+.. =+.+..+++-..+ ...
T Consensus 238 ~H~ltvVe-~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~ 316 (563)
T KOG1263|consen 238 NHQLTVVE-VDGAYTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKL 316 (563)
T ss_pred CeEEEEEE-ecceEEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccC
Confidence 55555443 7883 43 234668999999999998777889998766533211 1222222222110 000
Q ss_pred C----CCC-CCCcEeEEeee----c----ccCC-hHHHHHHHH---------hcCC-CCCCCceEEEcCccC--------
Q 008090 159 P----FQK-PHKEIPILFGE----W----FNVD-PEAIISQAL---------QTGA-GPNVSDAYTINGLPG-------- 206 (578)
Q Consensus 159 p----~~~-~~~e~~l~~~d----~----~~~~-~~~~~~~~~---------~~g~-~~~~~~~~liNG~~~-------- 206 (578)
+ .+. .+....+-++. . .... ......... .... ..+....+.||+.+.
T Consensus 317 ~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~ 396 (563)
T KOG1263|consen 317 PIYPFLPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSL 396 (563)
T ss_pred cccccCCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchh
Confidence 0 000 00000000000 0 0000 000000000 0000 000112334444321
Q ss_pred -------------CCcccCC----------CCeeEEEEeCCcEEEEEEEecCCCCe--EEEEEcCceEEEEeec-CCc--
Q 008090 207 -------------PLYNCSS----------KDTYKLKVKPGKTYLLRLINAALNDE--LFFSIANHTLTVVEAD-AVY-- 258 (578)
Q Consensus 207 -------------~~~~~~~----------~~~~~l~v~~G~~~rlRliN~~~~~~--~~~~l~gh~~~via~D-G~~-- 258 (578)
..+.|.. ...-.+.++-+..+.+-|-|.+...+ +.+|||||.|+|++.+ |+.
T Consensus 397 l~~~~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~ 476 (563)
T KOG1263|consen 397 LAAYFKNIPGYFTNDFPDKPPIKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDP 476 (563)
T ss_pred hhhhhccCCccccCccCCCCccccCCccccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCc
Confidence 0011111 12234677888888888989885443 4479999999999994 322
Q ss_pred ----------ccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEee
Q 008090 259 ----------VKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 259 ----------v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
..|...||+.|.||.-.-|.|.++++ |-|.+|||.
T Consensus 477 ~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNP---G~W~~HCHi 521 (563)
T KOG1263|consen 477 AKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNP---GVWLMHCHI 521 (563)
T ss_pred CcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCC---cEEEEEEec
Confidence 24677899999999999999999999 999999995
No 44
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.11 E-value=1.1e-05 Score=67.76 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=54.5
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCc--cccccCCCCeEEEEEEEcCCCCceeeecCcchhc
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYV--TQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLR 141 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~--~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~ 141 (578)
..|+|++||+| +++|....++++..+........ .+..+.. +...+.||+++++.|.. +|+|.|+|. ....
T Consensus 17 ~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~-~H~~ 89 (99)
T TIGR02656 17 AKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGV-KELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE-PHRG 89 (99)
T ss_pred CEEEECCCCEE--EEEECCCCCceEEECCCCCccch-hhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC-Cccc
Confidence 68999999986 56688767777776543211110 0111111 22457899999998873 899999998 3333
Q ss_pred ccceeeEEEe
Q 008090 142 STLYGPIIIL 151 (578)
Q Consensus 142 ~Gl~G~liV~ 151 (578)
+||.|.|+|+
T Consensus 90 aGM~G~I~V~ 99 (99)
T TIGR02656 90 AGMVGKITVE 99 (99)
T ss_pred cCCEEEEEEC
Confidence 7999999984
No 45
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.02 E-value=2.2e-05 Score=70.75 Aligned_cols=93 Identities=17% Similarity=0.259 Sum_probs=59.7
Q ss_pred eeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCC---C--cEEE
Q 008090 453 TRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPA---G--GWVA 527 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp---~--g~v~ 527 (578)
.+.+.++.|+.|++.+.|... ...|.|-||.+.-..-. .+..+. .+..-..-.+|+ | ++..
T Consensus 51 ~P~I~v~~Gd~V~v~v~N~~~--~~~H~~~I~~~g~~~~~------~p~mdG------~~~~~~~~i~p~~~~g~~~~~~ 116 (148)
T TIGR03095 51 NPTIVIPEGVTVHFTVINTDT--DSGHNFDISKRGPPYPY------MPGMDG------LGFVAGTGFLPPPKSGKFGYTD 116 (148)
T ss_pred CCEEEEcCCCEEEEEEEeCCC--CccccEEeecCCCcccc------ccccCC------CCccccCcccCCCCCCccceeE
Confidence 367889999999999999642 35666666543211000 000000 011111222232 2 2568
Q ss_pred EEEEccCceeeEEeeechhhhhccceEEEEEe
Q 008090 528 IRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 528 irf~adnpG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
+.|+++.+|.+.||||+..|...||.+.+.|+
T Consensus 117 ~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 117 FTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 89999999999999999999999999999874
No 46
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.95 E-value=3.6e-05 Score=83.40 Aligned_cols=100 Identities=20% Similarity=0.233 Sum_probs=70.6
Q ss_pred EeeecCceee--eEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEE
Q 008090 43 HNVTRLCHTR--NIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTY 120 (578)
Q Consensus 43 ~~~~~~g~~~--~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y 120 (578)
..+..+|.++ ++.+..-.|--+.|+|++||.|+++|+|.....=.+ ||+.+... |+ +.-+.||++.+.
T Consensus 532 ~~v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----nI----~~dv~PG~t~sv 601 (635)
T PRK02888 532 SKVIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----GV----NMEVAPQATASV 601 (635)
T ss_pred cceEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----Cc----cEEEcCCceEEE
Confidence 3455677444 455666666556899999999999999964211111 66654321 11 134779999999
Q ss_pred EEEEcCCCCceeeecCcc--hhcccceeeEEEeCC
Q 008090 121 NFTITGQRGTLLWHAHIS--WLRSTLYGPIIILPK 153 (578)
Q Consensus 121 ~f~~~~~~Gt~wYH~H~~--~~~~Gl~G~liV~~~ 153 (578)
.|++ +.+|+|||+|..- ....+|.|.++|+++
T Consensus 602 tF~a-dkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 602 TFTA-DKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred EEEc-CCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 9996 8999999999872 233799999999874
No 47
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=97.90 E-value=3.8e-05 Score=70.57 Aligned_cols=94 Identities=15% Similarity=0.214 Sum_probs=77.3
Q ss_pred eeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEc
Q 008090 453 TRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFA 532 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 532 (578)
..++.++.|++++|.|.|.+. ...+.|++.||.|+||+..+.. ..|...|++.|.+|+...|.+++
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~--~~~~~~~i~gh~~~Via~DG~~------------v~p~~~~~l~l~~G~R~dvlv~~ 124 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGA--STSFNFSIDGHPMTVIAADGVP------------VEPYKVDTLVLAPGQRYDVLVTA 124 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESS--S-BEEEEETTBCEEEEEETTEE------------EEEEEESBEEE-TTEEEEEEEEE
T ss_pred cceEEEcCCcEEEEEEEeccC--CeeEEEEeeccceeEeeecccc------------ccccccceEEeeCCeEEEEEEEe
Confidence 568899999999999999753 4689999999999999985321 22677899999999999999999
Q ss_pred cC-ceeeEEee----echhhhhccceEEEEEec
Q 008090 533 DN-PGVWFMHC----HLDVHTSWGLRMAWIVQN 560 (578)
Q Consensus 533 dn-pG~wl~HC----Hil~H~d~GM~~~~~V~~ 560 (578)
+. +|.|.++| +...+...|+...+.+.+
T Consensus 125 ~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 125 DQPPGNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp CSCSSEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred CCCCCeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 87 99999999 667778888887776654
No 48
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.89 E-value=3.3e-05 Score=64.87 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=53.0
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCC-CCCCccccccCCCCeEEEEEEEcCCCCceeeecCcchhcc
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWAD-GPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLRS 142 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~D-G~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~~ 142 (578)
+.|+|++||+| ++.|....++++.+---........+ ..+......+.||+++++.|+ .+|+|.|+|-. ...+
T Consensus 17 ~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~P-H~~~ 90 (99)
T PF00127_consen 17 SEITVKAGDTV--TFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCTP-HYEA 90 (99)
T ss_dssp SEEEEETTEEE--EEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEETT-TGGT
T ss_pred CEEEECCCCEE--EEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcCC-Cccc
Confidence 69999999985 56676556666555331100000000 001112245789999999997 68999999984 4448
Q ss_pred cceeeEEEe
Q 008090 143 TLYGPIIIL 151 (578)
Q Consensus 143 Gl~G~liV~ 151 (578)
||.|.|+|+
T Consensus 91 GM~G~i~V~ 99 (99)
T PF00127_consen 91 GMVGTIIVE 99 (99)
T ss_dssp TSEEEEEEE
T ss_pred CCEEEEEEC
Confidence 999999995
No 49
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.84 E-value=7.8e-05 Score=60.40 Aligned_cols=73 Identities=23% Similarity=0.326 Sum_probs=51.5
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCcchhccc
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLRST 143 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~~G 143 (578)
+.|+|++||+| +++|....+++++..... ++........+.||+++++.|+ ++|+|-|||-.+. .
T Consensus 11 ~~i~v~~GdtV--t~~N~d~~~Hnv~~~~g~-------~~~~~~~~~~~~~g~~~~~tf~---~~G~y~y~C~~Hp---~ 75 (83)
T TIGR02657 11 PELHVKVGDTV--TWINREAMPHNVHFVAGV-------LGEAALKGPMMKKEQAYSLTFT---EAGTYDYHCTPHP---F 75 (83)
T ss_pred CEEEECCCCEE--EEEECCCCCccEEecCCC-------CccccccccccCCCCEEEEECC---CCEEEEEEcCCCC---C
Confidence 68999999996 568988778888765421 1100001123578888887774 5899999998875 5
Q ss_pred ceeeEEEe
Q 008090 144 LYGPIIIL 151 (578)
Q Consensus 144 l~G~liV~ 151 (578)
|.|.++|+
T Consensus 76 M~G~v~V~ 83 (83)
T TIGR02657 76 MRGKVVVE 83 (83)
T ss_pred CeEEEEEC
Confidence 99999885
No 50
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.82 E-value=0.00038 Score=62.99 Aligned_cols=98 Identities=17% Similarity=0.135 Sum_probs=71.6
Q ss_pred EEEECCCCCC-cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccC-------CCCCCCC----Ccc-----ccccCCCC
Q 008090 54 IISVNGQFPG-PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTS-------GWADGPA----YVT-----QCPIQTGQ 116 (578)
Q Consensus 54 ~~~~Ng~~pg-P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~-------~~~DG~~----~~~-----q~~i~pG~ 116 (578)
.+-|||+-.| ++|-+..|-+|.|+|+|....++++-. + +... ...||.. |.+ -..|.+|+
T Consensus 74 ~fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~i--v-~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gq 150 (195)
T TIGR03094 74 PFNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKL--L-PNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGH 150 (195)
T ss_pred cccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEE--e-cCCCCCCCccccccCceeEeecccccCccccccccccc
Confidence 3668899888 899999999999999999876655544 2 1111 2246632 222 13456788
Q ss_pred eEEEEEEEcCCCCceeeecCcchhc-ccceeeEEEeCCCC
Q 008090 117 SYTYNFTITGQRGTLLWHAHISWLR-STLYGPIIILPKRN 155 (578)
Q Consensus 117 ~~~y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~ 155 (578)
+..-.|. +-++|+|||-|-.-+.. +||+|.+||...-.
T Consensus 151 s~sg~~~-~~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 151 SRSGWWN-DTSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred eeEEEec-cCCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 8666666 47899999999997776 99999999987643
No 51
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.81 E-value=0.00033 Score=64.80 Aligned_cols=102 Identities=22% Similarity=0.146 Sum_probs=73.1
Q ss_pred eEEEECCCCCC-cEEEEecCCEEEEEEEeCCCCceeEEEe--eeee--ccCCCCCCCC----C-----ccccccCCCCeE
Q 008090 53 NIISVNGQFPG-PSLVAREGDRVLIKVTNHVSNNVTIHWH--GVRQ--VTSGWADGPA----Y-----VTQCPIQTGQSY 118 (578)
Q Consensus 53 ~~~~~Ng~~pg-P~i~v~~Gd~v~v~l~N~l~~~~siH~H--G~~~--~~~~~~DG~~----~-----~~q~~i~pG~~~ 118 (578)
..+.|||.--| ++|.|..|-+|.|+++|....++++-.= +-.+ ...-..||.- | .....|.+|++.
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 36778998877 7999999999999999987555443322 1111 1122256621 1 123468899999
Q ss_pred EEEEEEcCCCCceeeecCcchhc-ccceeeEEEeCCCC
Q 008090 119 TYNFTITGQRGTLLWHAHISWLR-STLYGPIIILPKRN 155 (578)
Q Consensus 119 ~y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~ 155 (578)
.-.|.. -++|.|||-|-..+.. +||++-|+|...-.
T Consensus 154 ~~~~~~-l~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 154 SGVYND-LPAGYYWLVCGIPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred eEEEcc-CCCceEEEEccCCChhhcCCEEEEEEecCcc
Confidence 877763 6799999999998877 89999999987654
No 52
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.38 E-value=0.0007 Score=56.80 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=57.3
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEcc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFAD 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 533 (578)
..+.++.|++|+|+ |.+ ...|-+.++...+..-. .........+++.+.||....+.|..
T Consensus 17 ~~i~v~~G~~V~~~--N~~---~~~H~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~pG~t~~~tF~~- 76 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NNK---GGPHNVVFDEDAVPAGV--------------KELAKSLSHKDLLNSPGESYEVTFST- 76 (99)
T ss_pred CEEEECCCCEEEEE--ECC---CCCceEEECCCCCccch--------------hhhcccccccccccCCCCEEEEEeCC-
Confidence 46788999999887 432 35777766543211100 00011123467888999998887665
Q ss_pred CceeeEEeeechhhhhccceEEEEEe
Q 008090 534 NPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 534 npG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
+|.|.|||- .|...||.+.+.|+
T Consensus 77 -~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 77 -PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred -CEEEEEEcC--CccccCCEEEEEEC
Confidence 999999998 89999999999884
No 53
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.24 E-value=0.0017 Score=55.83 Aligned_cols=75 Identities=16% Similarity=0.164 Sum_probs=47.6
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEE-eeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCcchhcc
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHW-HGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLRS 142 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~-HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~~ 142 (578)
..|+|++||+|+....|. ++++.+ .+. ..+|... ..-.+|+++++.|+ .+|+|-|+|-. ...+
T Consensus 15 ~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~------~p~g~~~---~~s~~g~~~~~tF~---~~G~Y~Y~C~p-H~~~ 78 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDK---GHNVETIKGM------IPEGAEA---FKSKINEEYTVTVT---EEGVYGVKCTP-HYGM 78 (116)
T ss_pred CEEEECCCCEEEEEECCC---CeeEEEccCC------CcCCccc---ccCCCCCEEEEEeC---CCEEEEEEcCC-CccC
Confidence 689999999976665553 344333 111 1233211 12245666666664 68999999983 2348
Q ss_pred cceeeEEEeCCC
Q 008090 143 TLYGPIIILPKR 154 (578)
Q Consensus 143 Gl~G~liV~~~~ 154 (578)
||.|.|+|.++.
T Consensus 79 GM~G~V~Vg~~~ 90 (116)
T TIGR02375 79 GMVALIQVGDPP 90 (116)
T ss_pred CCEEEEEECCCC
Confidence 999999998754
No 54
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.13 E-value=0.0024 Score=55.51 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=54.2
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCcchhccc
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLRST 143 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~~G 143 (578)
-.|+|++||+ |+++|.....++++.-+.. . .+|. ....-.+|+++++.|. .+|+|-|+|-.|. .+|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~---~--~~g~---~~~~~~~~~s~~~Tfe---~~G~Y~Y~C~PH~-~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGM---D--PEGS---GTLKAGINESFTHTFE---TPGEYTYYCTPHP-GMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCC---C--cccc---cccccCCCcceEEEec---ccceEEEEeccCC-CCC
Confidence 4899999999 7788998778887776654 1 1222 1233455688887776 3899999987541 269
Q ss_pred ceeeEEEeC
Q 008090 144 LYGPIIILP 152 (578)
Q Consensus 144 l~G~liV~~ 152 (578)
|.|.|+|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 55
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=96.85 E-value=0.0048 Score=54.07 Aligned_cols=60 Identities=22% Similarity=0.414 Sum_probs=47.2
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEcc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFAD 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 533 (578)
..+.++.|+.|+|++.|.+ ...|.+-++++.+ ...++||+...++|.++
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d---~~~H~f~i~~~gi----------------------------s~~I~pGet~TitF~ad 109 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKS---PISEGFSIDAYGI----------------------------SEVIKAGETKTISFKAD 109 (135)
T ss_pred CEEEECCCCEEEEEEEeCC---CCccceEECCCCc----------------------------ceEECCCCeEEEEEECC
Confidence 3567999999999999964 3566655555321 34578899999999999
Q ss_pred CceeeEEeeec
Q 008090 534 NPGVWFMHCHL 544 (578)
Q Consensus 534 npG~wl~HCHi 544 (578)
.||.|-|||-+
T Consensus 110 KpG~Y~y~C~~ 120 (135)
T TIGR03096 110 KAGAFTIWCQL 120 (135)
T ss_pred CCEEEEEeCCC
Confidence 99999999964
No 56
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=96.78 E-value=0.01 Score=50.98 Aligned_cols=73 Identities=15% Similarity=0.245 Sum_probs=49.2
Q ss_pred cEEEEecCCEEEEEEEeCC-CCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCcchhcc
Q 008090 64 PSLVAREGDRVLIKVTNHV-SNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLRS 142 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~~ 142 (578)
..|+|++||+|+ ++|.. ..++++..-+ ... .| .......+|++++|.|. .+|+|-|+|-.| ..+
T Consensus 42 ~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~~-f~----s~~~~~~~G~t~s~Tf~---~~G~Y~Y~C~pH-~~~ 106 (115)
T TIGR03102 42 PAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DGD-LD----ESERVSEEGTTYEHTFE---EPGIYLYVCVPH-EAL 106 (115)
T ss_pred CEEEECCCCEEE--EEECCCCCCEEEEECC----CCC-cc----ccccccCCCCEEEEEec---CCcEEEEEccCC-CCC
Confidence 689999999965 67543 4566654310 011 11 11123578999999985 589999999854 236
Q ss_pred cceeeEEEe
Q 008090 143 TLYGPIIIL 151 (578)
Q Consensus 143 Gl~G~liV~ 151 (578)
||.|.|+|+
T Consensus 107 gM~G~I~V~ 115 (115)
T TIGR03102 107 GMKGAVVVE 115 (115)
T ss_pred CCEEEEEEC
Confidence 999999984
No 57
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.67 E-value=0.0086 Score=50.19 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=54.6
Q ss_pred eeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEc
Q 008090 453 TRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFA 532 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 532 (578)
...+.++.|++|.|+..+ ...|.+ .+...+ +.......... ..-.+..+.+|....+.|.
T Consensus 16 P~~i~V~~G~tV~~~n~~-----~~~Hnv-------~~~~~~---~~~~~~~~~~~----~~~~~~~~~~G~~~~~tF~- 75 (99)
T PF00127_consen 16 PSEITVKAGDTVTFVNND-----SMPHNV-------VFVADG---MPAGADSDYVP----PGDSSPLLAPGETYSVTFT- 75 (99)
T ss_dssp SSEEEEETTEEEEEEEES-----SSSBEE-------EEETTS---SHTTGGHCHHS----TTCEEEEBSTTEEEEEEEE-
T ss_pred CCEEEECCCCEEEEEECC-----CCCceE-------EEeccc---ccccccccccC----ccccceecCCCCEEEEEeC-
Confidence 346789999999998763 245544 333211 10000000000 1115677888988777777
Q ss_pred cCceeeEEeeechhhhhccceEEEEEe
Q 008090 533 DNPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 533 dnpG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
.+|.|.|+|- - |...||-+.+.|+
T Consensus 76 -~~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 76 -KPGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp -SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred -CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence 9999999999 4 9999999999984
No 58
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.17 E-value=0.021 Score=62.41 Aligned_cols=78 Identities=17% Similarity=0.335 Sum_probs=58.4
Q ss_pred eEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccC
Q 008090 455 TVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADN 534 (578)
Q Consensus 455 ~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 534 (578)
.+.++.|+.|.+.+.|.....+..|.|-+-++... +.+.||....+.|+++.
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI~----------------------------~dv~PG~t~svtF~adk 607 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGVN----------------------------MEVAPQATASVTFTADK 607 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccCcc----------------------------EEEcCCceEEEEEEcCC
Confidence 47799999999999995332356777766444311 24568999999999999
Q ss_pred ceeeEEeeechhhh-hccceEEEEEec
Q 008090 535 PGVWFMHCHLDVHT-SWGLRMAWIVQN 560 (578)
Q Consensus 535 pG~wl~HCHil~H~-d~GM~~~~~V~~ 560 (578)
||.|.+||...-|. +.+|.+.+.|++
T Consensus 608 PGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 608 PGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred CEEEEEECCcccccCcccceEEEEEEe
Confidence 99999999874432 248999998864
No 59
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.06 E-value=0.024 Score=47.96 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=42.4
Q ss_pred eEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEee
Q 008090 217 YKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 217 ~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
..+++++|+.++|.+.|.+... +.|.+++ .. -...|.||+...+.|...++ |+|.+.|..
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~-h~~~i~~---------------~~-~~~~l~~g~~~~~~f~~~~~---G~y~~~C~~ 94 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRP-HEFVIPD---------------LG-ISKVLPPGETATVTFTPLKP---GEYEFYCTM 94 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS--EEEEEGG---------------GT-EEEEE-TT-EEEEEEEE-S----EEEEEB-SS
T ss_pred CEEEEcCCCeEEEEEEECCCCc-EEEEECC---------------Cc-eEEEECCCCEEEEEEcCCCC---EEEEEEcCC
Confidence 5799999999999999998664 4566654 11 22789999999999988888 999999984
No 60
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.41 E-value=0.063 Score=47.78 Aligned_cols=94 Identities=13% Similarity=0.161 Sum_probs=63.5
Q ss_pred eEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccC
Q 008090 455 TVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADN 534 (578)
Q Consensus 455 ~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 534 (578)
...++.|++++.++.|.+. .-|=|=+= ++....+ .+.- .....-..-.-..++.+.||....+-+.+.+
T Consensus 64 ~~~v~aG~tv~~v~~n~~e---l~hef~~~---~~~~~~~--~~~~---~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~ 132 (158)
T COG4454 64 SFEVKAGETVRFVLKNEGE---LKHEFTMD---APDKNLE--HVTH---MILADDMEHDDPNTVTLAPGKSGELVVVFTG 132 (158)
T ss_pred cccccCCcEEeeeecCccc---ceEEEecc---Cccccch--hHHH---hhhCCccccCCcceeEeCCCCcEEEEEEecC
Confidence 3456779999999999754 33433222 2221111 0000 0000011112356899999999999999999
Q ss_pred ceeeEEeeechhhhhccceEEEEEe
Q 008090 535 PGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 535 pG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
+|.+-|-|-|-+|-+.||-+-+.|.
T Consensus 133 ~g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 133 AGKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred CccEEEEecCCCcccCCcEEEEEeC
Confidence 9999999999999999999999985
No 61
>PRK02710 plastocyanin; Provisional
Probab=95.32 E-value=0.068 Score=46.40 Aligned_cols=73 Identities=16% Similarity=0.271 Sum_probs=50.1
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEcc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFAD 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 533 (578)
..+.++.|++|+|+ |.+ ...|.+...+.. . ....-..+.+|....+.|..
T Consensus 47 ~~i~v~~Gd~V~~~--N~~---~~~H~v~~~~~~---------~---------------~~~~~~~~~pg~t~~~tF~~- 96 (119)
T PRK02710 47 STLTIKAGDTVKWV--NNK---LAPHNAVFDGAK---------E---------------LSHKDLAFAPGESWEETFSE- 96 (119)
T ss_pred CEEEEcCCCEEEEE--ECC---CCCceEEecCCc---------c---------------ccccccccCCCCEEEEEecC-
Confidence 35688999999986 422 357776543210 0 00111346788887766665
Q ss_pred CceeeEEeeechhhhhccceEEEEEe
Q 008090 534 NPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 534 npG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
||.|.|+|= .|...||-+.+.|+
T Consensus 97 -~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 97 -AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred -CEEEEEEcC--CCccCCcEEEEEEC
Confidence 999999996 89999999999884
No 62
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.21 E-value=0.19 Score=44.82 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=62.1
Q ss_pred CCCCcEEEEecCCEEEEEEEeCCCC--ceeEE---------EeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCC
Q 008090 60 QFPGPSLVAREGDRVLIKVTNHVSN--NVTIH---------WHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQR 128 (578)
Q Consensus 60 ~~pgP~i~v~~Gd~v~v~l~N~l~~--~~siH---------~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~ 128 (578)
.+++-.+.++.|++++..+.|.-.- ..++- .|...... +++- ......|.||++-+..|.. ..+
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~D---me~d-~~~~v~L~PG~s~elvv~f-t~~ 133 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADD---MEHD-DPNTVTLAPGKSGELVVVF-TGA 133 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCc---cccC-CcceeEeCCCCcEEEEEEe-cCC
Confidence 4566789999999999999997521 11111 11211111 2221 1233569999999999997 679
Q ss_pred CceeeecCcchhc-ccceeeEEEeC
Q 008090 129 GTLLWHAHISWLR-STLYGPIIILP 152 (578)
Q Consensus 129 Gt~wYH~H~~~~~-~Gl~G~liV~~ 152 (578)
|.|=+-|-..+.+ +||.|-|.|.+
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeCC
Confidence 9999999999988 89999999864
No 63
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=94.60 E-value=0.28 Score=42.24 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=30.1
Q ss_pred CCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEecC
Q 008090 522 AGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQNG 561 (578)
Q Consensus 522 p~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~ 561 (578)
++.. +.++++.+|.+-|+|= .|...||-+.+.|.++
T Consensus 54 ~g~~--~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 54 INEE--YTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred CCCE--EEEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 3444 4455678999999998 9999999999999885
No 64
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=94.57 E-value=0.3 Score=50.68 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=52.7
Q ss_pred CCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCC-CccccccCCCCeEEEEEEEcCCCCceeeecCcc
Q 008090 60 QFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPA-YVTQCPIQTGQSYTYNFTITGQRGTLLWHAHIS 138 (578)
Q Consensus 60 ~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~-~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~ 138 (578)
++--..+.|..|+ +++.++|....++. |.=+ +|+- ......|.||.+..+.+++ .+|+|-|+|-.+
T Consensus 40 ~c~p~~~tVpAG~-~~f~V~N~~~~~~E--fe~~--------~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~~~C~~~ 106 (375)
T PRK10378 40 QCEPMTLTVNAGK-TQFIIQNHSQKALE--WEIL--------KGVMVVEERENIAPGFSQKMTANL--QPGEYDMTCGLL 106 (375)
T ss_pred ccccCceeeCCCC-EEEEEEeCCCCcce--EEee--------ccccccccccccCCCCceEEEEec--CCceEEeecCcC
Confidence 3433689999996 99999999766533 1111 1110 0012569999999888776 599999999432
Q ss_pred hhcccceeeEEEeCC
Q 008090 139 WLRSTLYGPIIILPK 153 (578)
Q Consensus 139 ~~~~Gl~G~liV~~~ 153 (578)
..+.|.|+|...
T Consensus 107 ---~~~~g~l~Vtg~ 118 (375)
T PRK10378 107 ---TNPKGKLIVKGE 118 (375)
T ss_pred ---CCCCceEEEeCC
Confidence 335889999864
No 65
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=94.39 E-value=0.25 Score=42.87 Aligned_cols=72 Identities=21% Similarity=0.212 Sum_probs=50.0
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCc-chh-c
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHI-SWL-R 141 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~-~~~-~ 141 (578)
+.|++..|+.|++++++.+ .. ||+.++.. | -+.-+-||+.....|++ ..+|+|++.|.- .+. .
T Consensus 46 ~~l~lp~g~~v~~~ltS~D-Vi-----Hsf~ip~~----~----~k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~gH 110 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSED-VI-----HSFWIPEL----G----IKMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAGH 110 (120)
T ss_dssp SEEEEETTSEEEEEEEESS-S------EEEEETTC----T----EEEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTTG
T ss_pred ceecccccceEeEEEEcCC-cc-----cccccccc----C----cccccccccceeeeeee-ccCCcEEEcCccccCcCc
Confidence 7999999999999999963 33 44443321 1 12346789999999997 889999999885 222 2
Q ss_pred ccceeeEEE
Q 008090 142 STLYGPIII 150 (578)
Q Consensus 142 ~Gl~G~liV 150 (578)
..|.|-++|
T Consensus 111 ~~M~~~v~V 119 (120)
T PF00116_consen 111 SFMPGKVIV 119 (120)
T ss_dssp GG-EEEEEE
T ss_pred CCCeEEEEE
Confidence 667777665
No 66
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=93.87 E-value=0.26 Score=42.47 Aligned_cols=86 Identities=12% Similarity=0.112 Sum_probs=55.2
Q ss_pred cEEEEecC-CEEEEEEEeCCCCceeEEEeeeeeccCCC-----CCC---------CCC-c-----cccccCCCCeEEEEE
Q 008090 64 PSLVAREG-DRVLIKVTNHVSNNVTIHWHGVRQVTSGW-----ADG---------PAY-V-----TQCPIQTGQSYTYNF 122 (578)
Q Consensus 64 P~i~v~~G-d~v~v~l~N~l~~~~siH~HG~~~~~~~~-----~DG---------~~~-~-----~q~~i~pG~~~~y~f 122 (578)
..|.|+++ ..|+|+|+|....+-..--|-+-.....- .|| +|. . ...-|.+||+.+..|
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 58999985 89999999985433222223221110000 111 221 0 123578999999999
Q ss_pred EEcC-CCCc-eeeecCcchhcccceeeEE
Q 008090 123 TITG-QRGT-LLWHAHISWLRSTLYGPII 149 (578)
Q Consensus 123 ~~~~-~~Gt-~wYH~H~~~~~~Gl~G~li 149 (578)
+++. ++|+ |-|-|-..+..+.|.|.+.
T Consensus 96 ~~~~l~~g~~Y~f~CSFPGH~~~MkG~l~ 124 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCSFPGHWAMMRGTVK 124 (125)
T ss_pred ECCCCCCCCcceEEEcCCCcHHhceEEEe
Confidence 9853 5775 9999999888878888875
No 67
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=92.03 E-value=1.1 Score=38.44 Aligned_cols=75 Identities=21% Similarity=0.342 Sum_probs=48.9
Q ss_pred eeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEc
Q 008090 453 TRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFA 532 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 532 (578)
...+.++.|++|.|+-++.. ..|-. ...+.+.|+. ......+|....+.|
T Consensus 41 P~~ltV~~GdTVtw~~~~d~----~~HnV---------~s~~~~~f~s---------------~~~~~~~G~t~s~Tf-- 90 (115)
T TIGR03102 41 PPAIRVDPGTTVVWEWTGEG----GGHNV---------VSDGDGDLDE---------------SERVSEEGTTYEHTF-- 90 (115)
T ss_pred CCEEEECCCCEEEEEECCCC----CCEEE---------EECCCCCccc---------------cccccCCCCEEEEEe--
Confidence 34678999999999875422 34432 2222222221 111234566665555
Q ss_pred cCceeeEEeeechhhhhccceEEEEEe
Q 008090 533 DNPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 533 dnpG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
+.||.|-|+|= .|...||-+.+.|+
T Consensus 91 ~~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 91 EEPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred cCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 78999999998 89999999999884
No 68
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=91.81 E-value=2 Score=40.12 Aligned_cols=97 Identities=16% Similarity=0.261 Sum_probs=61.2
Q ss_pred CCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCc----cee-----eeeC
Q 008090 451 NGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPME----RNT-----IGVP 521 (578)
Q Consensus 451 ~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~----rDT-----v~vp 521 (578)
.+...+.++.|-.|.+.+.|.+ .+.| .|-|+..+....+.. ....+...+ ..+ --+.
T Consensus 83 ~G~m~i~VPAGw~V~i~f~N~~---~l~H-------nl~iv~~~~~~p~~~----~i~~DgkIl~~~G~s~~~~~~~GI~ 148 (196)
T PF06525_consen 83 NGQMTIYVPAGWNVQITFTNQE---SLPH-------NLVIVQNDTPTPNNP----PISSDGKILLYVGASPGNYTSNGIS 148 (196)
T ss_pred CCcEEEEEcCCCEEEEEEEcCC---CCCe-------eEEEEeCCCCCCCcc----ccCCCCceeeeccCCCCccccCCcc
Confidence 4456788999999999999954 3554 577775432111100 000000000 000 1123
Q ss_pred CCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEecC
Q 008090 522 AGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQNG 561 (578)
Q Consensus 522 p~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~ 561 (578)
+|.....-+..-.+|.+.+=|=+.-|...||-..+.|.+.
T Consensus 149 ~G~s~~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 149 SGQSASGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred CCceeeEEEccCCCceEEEEccCCChhhcCCEEEEEEecC
Confidence 5555555565667999999999999999999999999763
No 69
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=90.54 E-value=1.4 Score=35.38 Aligned_cols=73 Identities=15% Similarity=0.189 Sum_probs=45.2
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEcc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFAD 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 533 (578)
..+.++.|++|.|+ |.+ ...|-.+.....+ +.. .+. .-.+.++.... ++++
T Consensus 11 ~~i~v~~GdtVt~~--N~d---~~~Hnv~~~~g~~-------~~~--------------~~~-~~~~~~g~~~~--~tf~ 61 (83)
T TIGR02657 11 PELHVKVGDTVTWI--NRE---AMPHNVHFVAGVL-------GEA--------------ALK-GPMMKKEQAYS--LTFT 61 (83)
T ss_pred CEEEECCCCEEEEE--ECC---CCCccEEecCCCC-------ccc--------------ccc-ccccCCCCEEE--EECC
Confidence 45788999999985 432 3678877543211 000 011 11234555444 5668
Q ss_pred CceeeEEeeechhhhhccceEEEEEe
Q 008090 534 NPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 534 npG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
.||.|.|||=+ |- +|-+.+.|+
T Consensus 62 ~~G~y~y~C~~--Hp--~M~G~v~V~ 83 (83)
T TIGR02657 62 EAGTYDYHCTP--HP--FMRGKVVVE 83 (83)
T ss_pred CCEEEEEEcCC--CC--CCeEEEEEC
Confidence 89999999986 44 599988874
No 70
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=90.23 E-value=2.1 Score=40.85 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=55.5
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCc-chh-c
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHI-SWL-R 141 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~-~~~-~ 141 (578)
..|.+..|+.|++++++.+ . + ||...+.- |+ +.-+-||..-+..|++ +++|+|...|.. .+. .
T Consensus 117 ~~l~vp~g~~v~~~~ts~D-V---~--Hsf~ip~~----~~----k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD-V---I--HSFWVPEL----GG----KIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc-h---h--hccccccc----Cc----eEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 6899999999999999864 1 1 55554321 11 2335689999999986 889999998875 232 2
Q ss_pred ccceeeEEEeCCC
Q 008090 142 STLYGPIIILPKR 154 (578)
Q Consensus 142 ~Gl~G~liV~~~~ 154 (578)
+.|.+.++|.+++
T Consensus 182 ~~M~~~v~v~~~~ 194 (201)
T TIGR02866 182 SLMLFKVVVVERE 194 (201)
T ss_pred cCCeEEEEEECHH
Confidence 7899999988753
No 71
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=88.97 E-value=4.2 Score=32.63 Aligned_cols=68 Identities=10% Similarity=0.140 Sum_probs=37.4
Q ss_pred EEEEEEEecCCCCeEEEEEc-CceEEEE--eecCCcc-c-------ceEecEEEeCCCceEEEEEEcCCCCC-CCceEEE
Q 008090 226 TYLLRLINAALNDELFFSIA-NHTLTVV--EADAVYV-K-------PFDTDKLLITPGQTANVLLRTKPYFP-NATFFMQ 293 (578)
Q Consensus 226 ~~rlRliN~~~~~~~~~~l~-gh~~~vi--a~DG~~v-~-------P~~~d~v~l~pgeR~dv~v~~~~~~~-~g~y~l~ 293 (578)
.+.|.+.|.+. ....|.+. |+++.++ ..+|..+ + -+......|.|||...+-.+.+.... .|.|.+.
T Consensus 3 ~~~l~v~N~s~-~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 3 EFTLTVTNNSD-EPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EEEEEEEE-SS-S-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EEEEEEEeCCC-CeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEe
Confidence 36788888884 44456765 6655444 4467655 1 24457899999999999999987531 3889876
Q ss_pred E
Q 008090 294 A 294 (578)
Q Consensus 294 ~ 294 (578)
+
T Consensus 82 a 82 (82)
T PF12690_consen 82 A 82 (82)
T ss_dssp E
T ss_pred C
Confidence 4
No 72
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=88.90 E-value=1.1 Score=38.67 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=52.0
Q ss_pred eEEEEeC-CcEEEEEEEecCCCC----eEEEEEc-CceEEEEee-------cCCcccc----eEecEEEeCCCceEEEEE
Q 008090 217 YKLKVKP-GKTYLLRLINAALND----ELFFSIA-NHTLTVVEA-------DAVYVKP----FDTDKLLITPGQTANVLL 279 (578)
Q Consensus 217 ~~l~v~~-G~~~rlRliN~~~~~----~~~~~l~-gh~~~via~-------DG~~v~P----~~~d~v~l~pgeR~dv~v 279 (578)
..|+|++ ++.+++.|-|.|... -+++-|- .-.++-++. |-+|+++ +...+=+|++||..+|.|
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 5689998 489999999998543 2333332 222332322 3445532 244677999999999999
Q ss_pred EcCCCCCCCceEEEEe
Q 008090 280 RTKPYFPNATFFMQAR 295 (578)
Q Consensus 280 ~~~~~~~~g~y~l~~~ 295 (578)
++..-.+|++|.+.|.
T Consensus 96 ~~~~l~~g~~Y~f~CS 111 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCS 111 (125)
T ss_pred ECCCCCCCCcceEEEc
Confidence 9875323357999996
No 73
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=88.03 E-value=5.4 Score=34.55 Aligned_cols=75 Identities=16% Similarity=0.259 Sum_probs=54.1
Q ss_pred CeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEE
Q 008090 452 GTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFF 531 (578)
Q Consensus 452 ~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ 531 (578)
..+.+.++.|+.+++.+.+.+ ..|.|.+-+...+ +.+-||....+.|.
T Consensus 44 ~~~~l~lp~g~~v~~~ltS~D----ViHsf~ip~~~~k----------------------------~d~~PG~~~~~~~~ 91 (120)
T PF00116_consen 44 TDNELVLPAGQPVRFHLTSED----VIHSFWIPELGIK----------------------------MDAIPGRTNSVTFT 91 (120)
T ss_dssp BSSEEEEETTSEEEEEEEESS----S-EEEEETTCTEE----------------------------EEEBTTCEEEEEEE
T ss_pred ccceecccccceEeEEEEcCC----ccccccccccCcc----------------------------cccccccceeeeee
Confidence 355788999999999999854 6777776554333 23457899999999
Q ss_pred ccCceeeEEeeechhh-hhccceEEEEE
Q 008090 532 ADNPGVWFMHCHLDVH-TSWGLRMAWIV 558 (578)
Q Consensus 532 adnpG~wl~HCHil~H-~d~GM~~~~~V 558 (578)
++.||.+-..|..+=. -+.-|.+.+.|
T Consensus 92 ~~~~G~y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 92 PDKPGTYYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp ESSSEEEEEEE-SSSSTTGGG-EEEEEE
T ss_pred eccCCcEEEcCccccCcCcCCCeEEEEE
Confidence 9999999999987653 34556666655
No 74
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=85.72 E-value=3.5 Score=39.27 Aligned_cols=77 Identities=25% Similarity=0.369 Sum_probs=56.3
Q ss_pred eeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEc
Q 008090 453 TRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFA 532 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 532 (578)
.+.+.++.|+.|++.+.+.+ ..|. |+|-+.+. .+| +-||-...+.|.+
T Consensus 116 ~~~l~vp~g~~v~~~~ts~D----V~Hs-------f~ip~~~~------------------k~d---a~PG~~~~~~~~~ 163 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSKD----VIHS-------FWVPELGG------------------KID---AIPGQYNALWFNA 163 (201)
T ss_pred cCEEEEEcCCEEEEEEEeCc----hhhc-------ccccccCc------------------eEE---ecCCcEEEEEEEe
Confidence 45678999999999999854 4554 44433221 133 4478899999999
Q ss_pred cCceeeEEeeechhhh-hccceEEEEEecC
Q 008090 533 DNPGVWFMHCHLDVHT-SWGLRMAWIVQNG 561 (578)
Q Consensus 533 dnpG~wl~HCHil~H~-d~GM~~~~~V~~~ 561 (578)
+.||.+...|-..-.. +..|...+.|.++
T Consensus 164 ~~~G~y~~~c~e~cG~~h~~M~~~v~v~~~ 193 (201)
T TIGR02866 164 DEPGVYYGYCAELCGAGHSLMLFKVVVVER 193 (201)
T ss_pred CCCEEEEEEehhhCCcCccCCeEEEEEECH
Confidence 9999999999984422 4889998988764
No 75
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=83.72 E-value=8.6 Score=35.45 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=59.9
Q ss_pred CeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCC-CCCCCC--CCCCCCC--CCCCcceeeeeCCCcEE
Q 008090 452 GTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFG-NYDPDK--DLMNFNL--VDPMERNTIGVPAGGWV 526 (578)
Q Consensus 452 ~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g-~~~~~~--~~~~~~~--~~p~~rDTv~vpp~g~v 526 (578)
+...+.++.|-.|.++|.|.. .++ |.+-++..+.. ++.+.. +.+..+. ..+..-..=-+..|...
T Consensus 83 G~mtIyiPaGw~V~V~f~N~e---~~p-------Hnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~ 152 (195)
T TIGR03094 83 GAMTIYLPAGWNVYVTFTNYE---SLP-------HNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSR 152 (195)
T ss_pred CceEEEEeCCCEEEEEEEcCC---CCC-------ccEEEecCCCCCCCccccccCceeEeecccccCcccccccccccee
Confidence 457888999999999999954 244 45666554311 000000 0000000 00000001112345566
Q ss_pred EEEEEccCceeeEEeeechhhhhccceEEEEEec
Q 008090 527 AIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQN 560 (578)
Q Consensus 527 ~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~ 560 (578)
.+-|..-.||.+-+=|=+.-|...||-..+.|..
T Consensus 153 sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 153 SGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred EEEeccCCCeeEEEEcccCChhhcCcEEEEEEec
Confidence 6677777899999999999999999999999865
No 76
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=82.74 E-value=3 Score=33.50 Aligned_cols=58 Identities=22% Similarity=0.364 Sum_probs=32.0
Q ss_pred EEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCC---ccccccCCCCeEEEEEEEcCC---CCceee
Q 008090 65 SLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAY---VTQCPIQTGQSYTYNFTITGQ---RGTLLW 133 (578)
Q Consensus 65 ~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~---~~q~~i~pG~~~~y~f~~~~~---~Gt~wY 133 (578)
+|+..-|++..+.|.|..+. .+. .|++|... +.+..|.||++.+|++..+.. +|+|..
T Consensus 17 ~l~f~sgq~~D~~v~d~~g~---------~vw--rwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDKEGK---------EVW--RWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEESSS--EEEEEE-TT-----------EEE--ETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEeCCCCEEEEEEECCCCC---------EEE--EecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 56666666666666655322 121 46888542 345679999999999999633 688754
No 77
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=82.60 E-value=7.1 Score=38.38 Aligned_cols=77 Identities=18% Similarity=0.104 Sum_probs=56.2
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCc-chhc-
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHI-SWLR- 141 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~-~~~~- 141 (578)
..|.+..|..|+++++=. +.- ||...+.-. .+.-.-||...+..+++ +++|+|.-.|+. .+..
T Consensus 137 n~l~lPv~~~V~f~ltS~-DVi-----HsF~IP~l~--------~k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-DVI-----HSFWIPQLG--------GKIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGH 201 (247)
T ss_pred ceEEEeCCCeEEEEEEec-hhc-----eeEEecCCC--------ceeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCc
Confidence 799999999999998876 333 444433211 11335678888888985 899999999985 3333
Q ss_pred ccceeeEEEeCCCC
Q 008090 142 STLYGPIIILPKRN 155 (578)
Q Consensus 142 ~Gl~G~liV~~~~~ 155 (578)
+.|.|.++|.++++
T Consensus 202 ~~M~~~v~vvs~~~ 215 (247)
T COG1622 202 SFMRFKVIVVSQED 215 (247)
T ss_pred ccceEEEEEEcHHH
Confidence 78999999998754
No 78
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=79.09 E-value=9.3 Score=33.41 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=45.8
Q ss_pred eEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccC
Q 008090 455 TVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADN 534 (578)
Q Consensus 455 ~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 534 (578)
.++++.|++|+|+-.. ...|-.+.=+-. +|..-+++..-.+..... .++-
T Consensus 55 ~v~v~pGDTVtw~~~d-----~~~Hnv~~~~~~-----------------------~~~g~~~~~~~~~~s~~~--Tfe~ 104 (128)
T COG3794 55 EVTVKPGDTVTWVNTD-----SVGHNVTAVGGM-----------------------DPEGSGTLKAGINESFTH--TFET 104 (128)
T ss_pred EEEECCCCEEEEEECC-----CCCceEEEeCCC-----------------------CcccccccccCCCcceEE--Eecc
Confidence 4678889999999754 134543321111 111122333333344444 4445
Q ss_pred ceeeEEeeechhhhhccceEEEEEec
Q 008090 535 PGVWFMHCHLDVHTSWGLRMAWIVQN 560 (578)
Q Consensus 535 pG~wl~HCHil~H~d~GM~~~~~V~~ 560 (578)
||.+.|.| ..|...||-+.+.|++
T Consensus 105 ~G~Y~Y~C--~PH~~~gM~G~IvV~~ 128 (128)
T COG3794 105 PGEYTYYC--TPHPGMGMKGKIVVGE 128 (128)
T ss_pred cceEEEEe--ccCCCCCcEEEEEeCC
Confidence 99999999 5699999999999863
No 79
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=77.03 E-value=10 Score=37.21 Aligned_cols=78 Identities=21% Similarity=0.314 Sum_probs=56.7
Q ss_pred eeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEc
Q 008090 453 TRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFA 532 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 532 (578)
.+.+.++.|+.|++.+...+ .-| .|+|-+.+ --+.+-||-.....+.+
T Consensus 136 ~n~l~lPv~~~V~f~ltS~D----ViH-------sF~IP~l~---------------------~k~d~iPG~~~~~~~~~ 183 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSAD----VIH-------SFWIPQLG---------------------GKIDAIPGMTTELWLTA 183 (247)
T ss_pred cceEEEeCCCeEEEEEEech----hce-------eEEecCCC---------------------ceeeecCCceEEEEEec
Confidence 45678899999999998754 444 46664432 22334467888899999
Q ss_pred cCceeeEEeeechh-hhhccceEEEEEecCC
Q 008090 533 DNPGVWFMHCHLDV-HTSWGLRMAWIVQNGA 562 (578)
Q Consensus 533 dnpG~wl~HCHil~-H~d~GM~~~~~V~~~~ 562 (578)
+.+|.|-.+|+.+- .-+..|-..+.|.+++
T Consensus 184 ~~~G~Y~g~Cae~CG~gH~~M~~~v~vvs~~ 214 (247)
T COG1622 184 NKPGTYRGICAEYCGPGHSFMRFKVIVVSQE 214 (247)
T ss_pred CCCeEEEEEcHhhcCCCcccceEEEEEEcHH
Confidence 99999999999887 4456677777776543
No 80
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=74.36 E-value=5.4 Score=41.87 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=50.9
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCcch--hc
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISW--LR 141 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~--~~ 141 (578)
-++.|+.||.|++.++|-......+ ||.-.. .-|+ ...+.|-++-.|.|.+ ..+|.+||-|--.- ..
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~t--hgfv~p----~~~v----~~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh 626 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLT--HGFVIP----NYGV----NMEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALH 626 (637)
T ss_pred EEEEEecCcEEEEEecccceecccc--ceeeec----cCce----EEEEccCCceEEEEEc-cCCeeeehhhhhHHHHHH
Confidence 3788999999999988876444333 343322 1222 1446788888999997 78999999865422 22
Q ss_pred ccceeeEEEe
Q 008090 142 STLYGPIIIL 151 (578)
Q Consensus 142 ~Gl~G~liV~ 151 (578)
+-|.|-.+|+
T Consensus 627 ~em~~rmlve 636 (637)
T COG4263 627 MEMAGRMLVE 636 (637)
T ss_pred Hhhccceeec
Confidence 5566666665
No 81
>COG1470 Predicted membrane protein [Function unknown]
Probab=72.38 E-value=1.4e+02 Score=31.94 Aligned_cols=178 Identities=14% Similarity=0.233 Sum_probs=100.9
Q ss_pred EEEecCCE--EEEEEEeCC--CCceeEEEeeeee-ccCCCCCCCCCccccccCCCCeEEEEEEEc----CCCCceeeecC
Q 008090 66 LVAREGDR--VLIKVTNHV--SNNVTIHWHGVRQ-VTSGWADGPAYVTQCPIQTGQSYTYNFTIT----GQRGTLLWHAH 136 (578)
Q Consensus 66 i~v~~Gd~--v~v~l~N~l--~~~~siH~HG~~~-~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~----~~~Gt~wYH~H 136 (578)
+.+.++++ ..|++.|.- +....+-.-|+.- +...|.+|--.++...+.||++.+....+- ..+
T Consensus 278 ~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~p-------- 349 (513)
T COG1470 278 LEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATP-------- 349 (513)
T ss_pred eEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCC--------
Confidence 55566665 667778876 4455666555532 122234666567888899999998888872 123
Q ss_pred cchhcccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHHHHHHHHhcCCCCCCCceEEEcCccCCCcccCCCCe
Q 008090 137 ISWLRSTLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEAIISQALQTGAGPNVSDAYTINGLPGPLYNCSSKDT 216 (578)
Q Consensus 137 ~~~~~~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~ 216 (578)
|.|-..|+-...+ ...++.++-+.- .|.. ....-+-||.
T Consensus 350 ------G~Ynv~I~A~s~s------~v~~e~~lki~~---------------~g~~--~~~v~l~~g~------------ 388 (513)
T COG1470 350 ------GTYNVTITASSSS------GVTRELPLKIKN---------------TGSY--NELVKLDNGP------------ 388 (513)
T ss_pred ------CceeEEEEEeccc------cceeeeeEEEEe---------------cccc--ceeEEccCCc------------
Confidence 4444444433321 113444444431 0100 1122233443
Q ss_pred eEEEEeCCc--EEEEEEEecCCCC--eEEEEEcCceEEEEeecCCcccceEecEEEeCCCce--EEEEEEcCCCCCCCce
Q 008090 217 YKLKVKPGK--TYLLRLINAALND--ELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQT--ANVLLRTKPYFPNATF 290 (578)
Q Consensus 217 ~~l~v~~G~--~~rlRliN~~~~~--~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR--~dv~v~~~~~~~~g~y 290 (578)
..+++.+|+ .+++++-|.|+.. .+.+.+++-+=|=+.+|+. ..+ .|.||+| +++.++++.....|+|
T Consensus 389 ~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~-----~I~--sL~pge~~tV~ltI~vP~~a~aGdY 461 (513)
T COG1470 389 YRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDES-----TIP--SLEPGESKTVSLTITVPEDAGAGDY 461 (513)
T ss_pred EEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcc-----ccc--ccCCCCcceEEEEEEcCCCCCCCcE
Confidence 457788886 6799999999655 4566666655566677754 333 3456655 4455555554444889
Q ss_pred EEEEeecCC
Q 008090 291 FMQARPYFS 299 (578)
Q Consensus 291 ~l~~~~~~~ 299 (578)
.+......+
T Consensus 462 ~i~i~~ksD 470 (513)
T COG1470 462 RITITAKSD 470 (513)
T ss_pred EEEEEEeec
Confidence 888765433
No 82
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=68.16 E-value=1.1e+02 Score=28.93 Aligned_cols=75 Identities=13% Similarity=-0.006 Sum_probs=48.6
Q ss_pred EEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCc-chh-cc
Q 008090 65 SLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHI-SWL-RS 142 (578)
Q Consensus 65 ~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~-~~~-~~ 142 (578)
.+++..|..|+++++=.+ .- |+..++.- ++. .-.-||......|++ +++|+|.--|.- .+. .+
T Consensus 117 ~l~lp~g~~v~~~ltS~D-Vi-----Hsf~vp~l-------~~k-~d~~PG~~~~~~~~~-~~~G~y~g~C~e~CG~~H~ 181 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD-VI-----HSFSVPDL-------NLK-MDAIPGRINHLFFCP-DRHGVFVGYCSELCGVGHS 181 (194)
T ss_pred eEEEeCCCEEEeeeecCc-cc-----cceecccc-------Cce-eecCCCceEEEEEEc-CCCEEEEEEeehhhCcCcc
Confidence 588889999999887663 22 33333211 111 123478888888885 889999877764 222 26
Q ss_pred cceeeEEEeCCC
Q 008090 143 TLYGPIIILPKR 154 (578)
Q Consensus 143 Gl~G~liV~~~~ 154 (578)
.|.+.+.|.+++
T Consensus 182 ~M~~~v~v~~~~ 193 (194)
T MTH00047 182 YMPIVIEVVDVD 193 (194)
T ss_pred cCcEEEEEEcCC
Confidence 788888887654
No 83
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=64.94 E-value=21 Score=29.29 Aligned_cols=73 Identities=15% Similarity=0.077 Sum_probs=42.1
Q ss_pred EEeCCcEEEEEEE--ecCCCCeEEEEEcCceEEEEeecCCcccceEecEE-EeCCCceEEEEEEcCCCCCCCceEEEEee
Q 008090 220 KVKPGKTYLLRLI--NAALNDELFFSIANHTLTVVEADAVYVKPFDTDKL-LITPGQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 220 ~v~~G~~~rlRli--N~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v-~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
.-+|||++.||++ +... ......-....++|..-+|..+. .... .......++..+..+....-|.|.|++..
T Consensus 10 iYrPGetV~~~~~~~~~~~-~~~~~~~~~~~v~i~dp~g~~v~---~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 10 IYRPGETVHFRAIVRDLDN-DFKPPANSPVTVTIKDPSGNEVF---RWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp EE-TTSEEEEEEEEEEECT-TCSCESSEEEEEEEEETTSEEEE---EEEEEETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred CcCCCCEEEEEEEEecccc-ccccccCCceEEEEECCCCCEEE---EEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 4589999999988 6662 21101111233556666665331 2223 44678899999999876555999999885
No 84
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=64.30 E-value=61 Score=26.16 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=41.1
Q ss_pred CcEEEEe---cCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeee
Q 008090 63 GPSLVAR---EGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWH 134 (578)
Q Consensus 63 gP~i~v~---~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH 134 (578)
.|.+.++ ....|+|+|.|.-..+..+....... ..+. ..+..|.||++.+..|.+. ..--||.
T Consensus 8 ~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y-----~~~~--~~~~~v~ag~~~~~~w~l~--~s~gwYD 73 (89)
T PF05506_consen 8 APEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAY-----GGGG--PWTYTVAAGQTVSLTWPLA--ASGGWYD 73 (89)
T ss_pred CCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCc-----CCCC--CEEEEECCCCEEEEEEeec--CCCCcEE
Confidence 3555554 23589999999987777777665221 1222 2457799999999999873 3334553
No 85
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=63.38 E-value=84 Score=28.18 Aligned_cols=61 Identities=20% Similarity=0.322 Sum_probs=35.5
Q ss_pred EEEEecCCEEEEEEEeCCCC---ceeEEEeeee-----ec-cCCCCCCCCCc-----cccccCCCCeEEEEEEEc
Q 008090 65 SLVAREGDRVLIKVTNHVSN---NVTIHWHGVR-----QV-TSGWADGPAYV-----TQCPIQTGQSYTYNFTIT 125 (578)
Q Consensus 65 ~i~v~~Gd~v~v~l~N~l~~---~~siH~HG~~-----~~-~~~~~DG~~~~-----~q~~i~pG~~~~y~f~~~ 125 (578)
.=.+++|.+..|.+.=...+ ...--.||+- ++ +.+..||.... --||+.+||.++|.+.++
T Consensus 49 pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~slp 123 (158)
T KOG4063|consen 49 PCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSLP 123 (158)
T ss_pred ceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEee
Confidence 45567787766665544321 1122234432 21 12336665433 459999999999999885
No 86
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=63.19 E-value=11 Score=29.65 Aligned_cols=61 Identities=26% Similarity=0.402 Sum_probs=25.7
Q ss_pred EecCC--EEEEEEEeCCCCc---eeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEc----CCCCcee
Q 008090 68 AREGD--RVLIKVTNHVSNN---VTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTIT----GQRGTLL 132 (578)
Q Consensus 68 v~~Gd--~v~v~l~N~l~~~---~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~----~~~Gt~w 132 (578)
|++|+ ++.++|+|....+ .++-.-. +..|.......+-..|+||++.+..|.+. ..+|+|.
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~----P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~ 70 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSL----PEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTYT 70 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE------TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeC----CCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceEE
Confidence 34565 4566778876432 2222211 34444211111223699999988888873 2356653
No 87
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=63.18 E-value=12 Score=31.78 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=28.3
Q ss_pred EEEEEeCCCC---ceeEEEeeeeeccC---CCCCCCCCccccccCCCCeEEEEEEE
Q 008090 75 LIKVTNHVSN---NVTIHWHGVRQVTS---GWADGPAYVTQCPIQTGQSYTYNFTI 124 (578)
Q Consensus 75 ~v~l~N~l~~---~~siH~HG~~~~~~---~~~DG~~~~~q~~i~pG~~~~y~f~~ 124 (578)
.|++.|.... -.+-|||=-+..+. -..+||-| .|..|.||++|+|.=-+
T Consensus 33 titI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVG-eQP~l~PG~~y~YtSg~ 87 (126)
T COG2967 33 TVTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVG-EQPLLAPGEEYQYTSGC 87 (126)
T ss_pred EEEEecCCCccceeeeeEEEEecCCCcEEEEEcCceec-cccccCCCCceEEcCCc
Confidence 3556666543 35678884332211 00344433 47789999999997443
No 88
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=57.76 E-value=99 Score=24.87 Aligned_cols=67 Identities=18% Similarity=0.263 Sum_probs=41.1
Q ss_pred EEeCCcEE--EEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEE-EeCCCceEEEEEEcCCCCCCCceEEEEee
Q 008090 220 KVKPGKTY--LLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKL-LITPGQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 220 ~v~~G~~~--rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v-~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
.+.+|+.+ .+.+.|.|....-.+.+. +-.||..+ ....+ .|.||+...+.+....+. .|.|.+.+..
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~-~G~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPS-PGSYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS--CEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCC-CCeEEEEEEE
Confidence 55667754 567999987664444433 34466543 34445 889999999988886642 2888888764
No 89
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=56.17 E-value=39 Score=34.79 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=14.4
Q ss_pred ccccCCCCeEEEEEEE
Q 008090 109 QCPIQTGQSYTYNFTI 124 (578)
Q Consensus 109 q~~i~pG~~~~y~f~~ 124 (578)
+.||+|||+++.+..+
T Consensus 337 ~~pI~PGETr~v~v~a 352 (399)
T TIGR03079 337 QSAIAPGETVEVKMEA 352 (399)
T ss_pred CCCcCCCcceEEEEEE
Confidence 4689999999999987
No 90
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=55.54 E-value=88 Score=29.57 Aligned_cols=77 Identities=16% Similarity=0.238 Sum_probs=56.0
Q ss_pred eeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEc
Q 008090 453 TRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFA 532 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 532 (578)
.....++.|+.+++.+...+ ..|.|.+-.... .+|.+ ||-...+.|.+
T Consensus 115 ~~~l~lp~g~~v~~~ltS~D----ViHsf~vp~l~~-------------------------k~d~~---PG~~~~~~~~~ 162 (194)
T MTH00047 115 DKPLRLVYGVPYHLLVTSSD----VIHSFSVPDLNL-------------------------KMDAI---PGRINHLFFCP 162 (194)
T ss_pred CceEEEeCCCEEEeeeecCc----cccceeccccCc-------------------------eeecC---CCceEEEEEEc
Confidence 34577899999999998743 566555433221 13433 68889999999
Q ss_pred cCceeeEEeeechhhh-hccceEEEEEecC
Q 008090 533 DNPGVWFMHCHLDVHT-SWGLRMAWIVQNG 561 (578)
Q Consensus 533 dnpG~wl~HCHil~H~-d~GM~~~~~V~~~ 561 (578)
+.+|.+-.-|.-+--. +..|-..+.|.++
T Consensus 163 ~~~G~y~g~C~e~CG~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 163 DRHGVFVGYCSELCGVGHSYMPIVIEVVDV 192 (194)
T ss_pred CCCEEEEEEeehhhCcCcccCcEEEEEEcC
Confidence 9999999999977654 5677778887754
No 91
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=55.44 E-value=30 Score=33.63 Aligned_cols=76 Identities=21% Similarity=0.336 Sum_probs=55.3
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEcc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFAD 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 533 (578)
+-+.++.|+.+++.+...+ ..| .|+|-+.+. .+|.+ ||-...+.|++|
T Consensus 139 nel~lP~g~pV~~~ltS~D----ViH-------SF~VP~l~~------------------K~Dai---PG~~n~~~~~~~ 186 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNS----VMN-------SFFIPQLGS------------------QIYAM---AGMQTKLHLIAN 186 (226)
T ss_pred ceEEEECCCEEEEEEEECc----hhh-------hhhhhhcCC------------------eeecC---CCceEEEEEEeC
Confidence 3567899999999998754 444 466654431 25655 688888999999
Q ss_pred CceeeEEeeechhhh-hccceEEEEEecC
Q 008090 534 NPGVWFMHCHLDVHT-SWGLRMAWIVQNG 561 (578)
Q Consensus 534 npG~wl~HCHil~H~-d~GM~~~~~V~~~ 561 (578)
.||.|.-.|--.--. +..|...+.|.++
T Consensus 187 ~~G~y~g~CaE~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 187 EPGVYDGISANYSGPGFSGMKFKAIATDR 215 (226)
T ss_pred CCEEEEEEchhhcCcCccCCeEEEEEECH
Confidence 999999999765533 4677777777654
No 92
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=53.30 E-value=47 Score=32.27 Aligned_cols=78 Identities=15% Similarity=0.278 Sum_probs=56.6
Q ss_pred CeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEE
Q 008090 452 GTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFF 531 (578)
Q Consensus 452 ~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ 531 (578)
..+.+.++.|+.|++.+.+.+ ..|. |+|-+.+. -+.+-||-...+.|.
T Consensus 138 ~~n~l~lP~~~~v~~~~ts~D----ViHs-------f~ip~~~~---------------------k~d~~Pg~~~~~~~~ 185 (228)
T MTH00140 138 VDNRLVLPYSVDTRVLVTSAD----VIHS-------WTVPSLGV---------------------KVDAIPGRLNQLSFE 185 (228)
T ss_pred cCCeEEEeeCcEEEEEEEcCc----cccc-------eeccccCc---------------------eeECCCCcceeEEEE
Confidence 345678999999999999854 4554 55533321 123346888889999
Q ss_pred ccCceeeEEeeechhhh-hccceEEEEEecC
Q 008090 532 ADNPGVWFMHCHLDVHT-SWGLRMAWIVQNG 561 (578)
Q Consensus 532 adnpG~wl~HCHil~H~-d~GM~~~~~V~~~ 561 (578)
++.||.+...|.-+-.. +..|-..++|.++
T Consensus 186 ~~~~g~y~~~C~e~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 186 PKRPGVFYGQCSEICGANHSFMPIVVEAVPL 216 (228)
T ss_pred eCCCEEEEEECccccCcCcCCCeEEEEEECH
Confidence 99999999999987765 5777777877754
No 93
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=52.42 E-value=76 Score=24.11 Aligned_cols=66 Identities=14% Similarity=0.317 Sum_probs=37.1
Q ss_pred eeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEe
Q 008090 216 TYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQAR 295 (578)
Q Consensus 216 ~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~ 295 (578)
-..++++.|+++++.+-+.+. ...+.+...+|..+....-.. -..+..-.+.+...++ |+|+|+..
T Consensus 4 ~y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~~~---GtYyi~V~ 69 (70)
T PF04151_consen 4 YYSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAPAA---GTYYIRVY 69 (70)
T ss_dssp EEEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEESSS---EEEEEEEE
T ss_pred EEEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcCCC---EEEEEEEE
Confidence 357899999999999877764 223556666654331111111 1112233344455555 99998864
No 94
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=49.63 E-value=52 Score=27.74 Aligned_cols=67 Identities=21% Similarity=0.345 Sum_probs=41.2
Q ss_pred EEEEEeCCCCceeEEEeeeeeccCCCCC-CCCCccccccCCCCeEEEEEEEcCCCCceeeecCcchhcccceeeEEEe
Q 008090 75 LIKVTNHVSNNVTIHWHGVRQVTSGWAD-GPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLRSTLYGPIIIL 151 (578)
Q Consensus 75 ~v~l~N~l~~~~siH~HG~~~~~~~~~D-G~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 151 (578)
.|+++|.|.....|..|=-.-. .| |+ ..|.||+++..+|.. +--|+--|.|+..........-+.|-
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S~d----~Dlg~-----~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~~~~~~~~~f~vy 69 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKSKD----DDLGW-----HVLKPGQSYSFSFRD-NFFGTTLFWCHFRWPGGKYHHSFDVY 69 (110)
T ss_pred EEEEEECCCCCCeEEEEeeCCC----ccCCC-----EECCCCCEEEEEEec-CcCCceeEEEEEEECCccEEEEEEEE
Confidence 5889999955444544432211 22 32 568999999999985 55577777788765222234555554
No 95
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=49.24 E-value=48 Score=32.20 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=45.1
Q ss_pred EEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeec
Q 008090 218 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPY 297 (578)
Q Consensus 218 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 297 (578)
.+.+..|+.+||++.+.- -. |.|.| |...-.+..-||..-.+.++++++ |.|...|..+
T Consensus 141 ~l~lP~~~~v~~~~ts~D--Vi-------Hsf~i---------p~~~~k~d~~Pg~~~~~~~~~~~~---g~y~~~C~e~ 199 (228)
T MTH00140 141 RLVLPYSVDTRVLVTSAD--VI-------HSWTV---------PSLGVKVDAIPGRLNQLSFEPKRP---GVFYGQCSEI 199 (228)
T ss_pred eEEEeeCcEEEEEEEcCc--cc-------cceec---------cccCceeECCCCcceeEEEEeCCC---EEEEEECccc
Confidence 578899999999998854 23 33443 322233556689999999999888 9999999876
Q ss_pred CCC
Q 008090 298 FSG 300 (578)
Q Consensus 298 ~~~ 300 (578)
++.
T Consensus 200 CG~ 202 (228)
T MTH00140 200 CGA 202 (228)
T ss_pred cCc
Confidence 543
No 96
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=44.09 E-value=1.5e+02 Score=23.01 Aligned_cols=65 Identities=18% Similarity=0.300 Sum_probs=31.2
Q ss_pred eCCcE--EEEEEEecCCCC--eEEEEEcCceEEEEeecCCcc--cceEecEEEeCCCceEEEEEEcCCC--CCCCceEEE
Q 008090 222 KPGKT--YLLRLINAALND--ELFFSIANHTLTVVEADAVYV--KPFDTDKLLITPGQTANVLLRTKPY--FPNATFFMQ 293 (578)
Q Consensus 222 ~~G~~--~rlRliN~~~~~--~~~~~l~gh~~~via~DG~~v--~P~~~d~v~l~pgeR~dv~v~~~~~--~~~g~y~l~ 293 (578)
.+|+. +++.+.|.+... ...+++.. =+|-.+ .|..+. .|.||+...+.|+...+ ...|+|.|.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-------P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v~ 72 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSL-------PEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTVT 72 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeC-------CCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEEE
Confidence 45664 567788988543 23444432 223221 344444 88999877777666432 223889887
Q ss_pred Ee
Q 008090 294 AR 295 (578)
Q Consensus 294 ~~ 295 (578)
..
T Consensus 73 ~~ 74 (78)
T PF10633_consen 73 VT 74 (78)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 97
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=43.06 E-value=96 Score=28.31 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=52.3
Q ss_pred CeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEE
Q 008090 452 GTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFF 531 (578)
Q Consensus 452 ~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ 531 (578)
..+.+.++.|+.+++.+...+ ..|.| +|-+.+ ...|.+ ||-...+.+.
T Consensus 71 vDn~LvLP~g~~Vr~~lTS~D----VIHSF-------~VP~lg------------------vK~Dav---PGr~n~l~~~ 118 (162)
T PTZ00047 71 VDKRLTLPTRTHIRFLITATD----VIHSW-------SVPSLG------------------IKADAI---PGRLHKINTF 118 (162)
T ss_pred ecCCEEEeCCCEEEEEEEeCc----cceee-------eccccC------------------ceeecc---CCceEEEEEe
Confidence 345577899999999998743 45654 443332 113333 6777788899
Q ss_pred ccCceeeEEeeechhhh-hccceEEEEEec
Q 008090 532 ADNPGVWFMHCHLDVHT-SWGLRMAWIVQN 560 (578)
Q Consensus 532 adnpG~wl~HCHil~H~-d~GM~~~~~V~~ 560 (578)
++.+|.+...|.-+--. +..|-..+.|..
T Consensus 119 ~~~~G~y~gqCsElCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 119 ILREGVFYGQCSEMCGTLHGFMPIVVEAVS 148 (162)
T ss_pred cCCCeEEEEEcchhcCcCccCceEEEEEeC
Confidence 99999999999866532 345767776654
No 98
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=42.15 E-value=47 Score=29.07 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=12.5
Q ss_pred CCCCCCccccccCCCCeEEEE
Q 008090 101 ADGPAYVTQCPIQTGQSYTYN 121 (578)
Q Consensus 101 ~DG~~~~~q~~i~pG~~~~y~ 121 (578)
.+||-| .|.-|.||++|.|.
T Consensus 66 G~GVVG-~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 66 GEGVVG-EQPVLAPGESFEYT 85 (127)
T ss_pred CCceec-CCceECCCCCeEEe
Confidence 344432 34567999987765
No 99
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=41.58 E-value=74 Score=28.50 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=26.4
Q ss_pred EeCCCceEEEEE-EcCCCCCCCceEEEEeecCCCC
Q 008090 268 LITPGQTANVLL-RTKPYFPNATFFMQARPYFSGM 301 (578)
Q Consensus 268 ~l~pgeR~dv~v-~~~~~~~~g~y~l~~~~~~~~~ 301 (578)
.+.||+.+.|.+ ...+|..+|.|.+.+.....+.
T Consensus 98 PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p~G~ 132 (146)
T PF10989_consen 98 PVPPGTTVTVVLSPVRNPRSGGTYQFNVTAFPPGD 132 (146)
T ss_pred CCCCCCEEEEEEEeeeCCCCCCeEEEEEEEECCCC
Confidence 468999999999 4456666799999998765543
No 100
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=40.06 E-value=1.2e+02 Score=28.41 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=17.9
Q ss_pred cccccCCCCeEEEEEEE-cCCCCcee
Q 008090 108 TQCPIQTGQSYTYNFTI-TGQRGTLL 132 (578)
Q Consensus 108 ~q~~i~pG~~~~y~f~~-~~~~Gt~w 132 (578)
+-..|+||+..++.|.+ |...|.|-
T Consensus 79 ~~~~i~pg~~vsh~~vv~p~~~G~f~ 104 (181)
T PF05753_consen 79 SWERIPPGENVSHSYVVRPKKSGYFN 104 (181)
T ss_pred EEEEECCCCeEEEEEEEeeeeeEEEE
Confidence 33569999999888887 34466553
No 101
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=39.74 E-value=86 Score=30.48 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=44.0
Q ss_pred EEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeec
Q 008090 218 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPY 297 (578)
Q Consensus 218 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 297 (578)
.+.+..|+.+||++...- -. |.|.+ |...-.+..-||..-.+.+.++.+ |.|...|.-+
T Consensus 141 ~lvlP~~~~v~~~~tS~D--Vi-------Hsf~v---------P~~~~k~daiPG~~~~~~~~~~~~---G~~~g~Cse~ 199 (228)
T MTH00008 141 RAVLPMQTEIRVLVTAAD--VI-------HSWTV---------PSLGVKVDAVPGRLNQIGFTITRP---GVFYGQCSEI 199 (228)
T ss_pred eEEEecCCEEEEEEEeCC--cc-------ccccc---------cccCcceecCCCceEEEEEEeCCC---EEEEEEChhh
Confidence 478889999999998754 23 33443 322223445689999999998888 9999999865
Q ss_pred CCC
Q 008090 298 FSG 300 (578)
Q Consensus 298 ~~~ 300 (578)
++.
T Consensus 200 CG~ 202 (228)
T MTH00008 200 CGA 202 (228)
T ss_pred cCc
Confidence 543
No 102
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=39.62 E-value=57 Score=26.64 Aligned_cols=49 Identities=14% Similarity=0.261 Sum_probs=28.9
Q ss_pred EEEEEEEecCCCCeEEEEEcCceEEEEeecCCcc--c--ceEecEEEeCCCceEEE
Q 008090 226 TYLLRLINAALNDELFFSIANHTLTVVEADAVYV--K--PFDTDKLLITPGQTANV 277 (578)
Q Consensus 226 ~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v--~--P~~~d~v~l~pgeR~dv 277 (578)
.|++||-|.+.. .+.|-...+.|...||... + -+....=.|.|||.+..
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 489999999966 3566677888888877532 1 12224457888886544
No 103
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=39.27 E-value=69 Score=30.82 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=54.7
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEcc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFAD 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 533 (578)
+-+.++.|+.|++.+...+ ..| .|+|-+.+ ..+|.+ ||-...+.|.++
T Consensus 130 n~l~iP~g~~v~~~ltS~D----ViH-------sf~vP~l~------------------~k~dai---PG~~~~~~~~~~ 177 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSAD----TMT-------SFWIPQLG------------------GQKYAM---TGMTMNWYLQAD 177 (217)
T ss_pred CcEEEECCCEEEEEEECCc----hhh-------hhhchhhC------------------ceeecC---CCceEEEEEEeC
Confidence 3467899999999998743 344 46664432 125655 688889999999
Q ss_pred CceeeEEeeechhhh-hccceEEEEEecC
Q 008090 534 NPGVWFMHCHLDVHT-SWGLRMAWIVQNG 561 (578)
Q Consensus 534 npG~wl~HCHil~H~-d~GM~~~~~V~~~ 561 (578)
.||.|--.|=-+--. +.-|...+.|.++
T Consensus 178 ~~G~y~g~Cae~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 178 QVGTYRGRNANFNGEGFADQTFDVNAVSE 206 (217)
T ss_pred CCEEEEEEehhhcCccccCCeEEEEEeCH
Confidence 999999999655433 4567777777654
No 104
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=39.06 E-value=2.2e+02 Score=24.64 Aligned_cols=60 Identities=20% Similarity=0.312 Sum_probs=34.5
Q ss_pred EEEEecCC--EEEEEEEeCCCCceeEEEeeeeeccC----------C-CCCCCC---------CccccccCCCCeEEEEE
Q 008090 65 SLVAREGD--RVLIKVTNHVSNNVTIHWHGVRQVTS----------G-WADGPA---------YVTQCPIQTGQSYTYNF 122 (578)
Q Consensus 65 ~i~v~~Gd--~v~v~l~N~l~~~~siH~HG~~~~~~----------~-~~DG~~---------~~~q~~i~pG~~~~y~f 122 (578)
-|.+++|+ ++.|++.|..+...++..--...... . -.|... .-.+.-|+|+++.+..|
T Consensus 20 dL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~ 99 (121)
T PF06030_consen 20 DLKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTF 99 (121)
T ss_pred EEEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEE
Confidence 46677774 67888889887766665543322111 0 012100 01125589999988888
Q ss_pred EE
Q 008090 123 TI 124 (578)
Q Consensus 123 ~~ 124 (578)
.+
T Consensus 100 ~i 101 (121)
T PF06030_consen 100 TI 101 (121)
T ss_pred EE
Confidence 87
No 105
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=38.76 E-value=23 Score=29.43 Aligned_cols=29 Identities=34% Similarity=0.433 Sum_probs=25.4
Q ss_pred EEEECCCCCCcEEEEecCCEEEEEEEeCC
Q 008090 54 IISVNGQFPGPSLVAREGDRVLIKVTNHV 82 (578)
Q Consensus 54 ~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l 82 (578)
-..+||+.-=|.=.|+.||.|+|++.|..
T Consensus 35 rV~vNG~~aKpS~~VK~GD~l~i~~~~~~ 63 (100)
T COG1188 35 RVKVNGQRAKPSKEVKVGDILTIRFGNKE 63 (100)
T ss_pred eEEECCEEcccccccCCCCEEEEEeCCcE
Confidence 35689988778999999999999999985
No 106
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.70 E-value=99 Score=30.08 Aligned_cols=78 Identities=14% Similarity=0.285 Sum_probs=56.7
Q ss_pred CeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEE
Q 008090 452 GTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFF 531 (578)
Q Consensus 452 ~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ 531 (578)
..+...++.|+.+++.+...+ .. |.|+|-+.|. ..|.+ ||....+.|.
T Consensus 138 ~~n~lvlP~~~~v~~~~tS~D----Vi-------Hsf~ip~~~~------------------k~da~---PG~~~~~~~~ 185 (230)
T MTH00129 138 ADHRMVVPVESPIRVLVSAED----VL-------HSWAVPALGV------------------KMDAV---PGRLNQTAFI 185 (230)
T ss_pred ccceEEEecCcEEEEEEEeCc----cc-------cceeccccCC------------------ccccC---CCceEEEEEE
Confidence 345678899999999998754 33 5677765531 13433 6888888999
Q ss_pred ccCceeeEEeeechhhh-hccceEEEEEecC
Q 008090 532 ADNPGVWFMHCHLDVHT-SWGLRMAWIVQNG 561 (578)
Q Consensus 532 adnpG~wl~HCHil~H~-d~GM~~~~~V~~~ 561 (578)
++.||.+...|.-+-.. +..|-..++|.+.
T Consensus 186 ~~~~G~~~g~C~e~CG~~H~~M~~~v~vv~~ 216 (230)
T MTH00129 186 ASRPGVFYGQCSEICGANHSFMPIVVEAVPL 216 (230)
T ss_pred eCCceEEEEEChhhccccccCCcEEEEEECH
Confidence 99999999999876544 5677777777653
No 107
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=37.86 E-value=77 Score=30.75 Aligned_cols=62 Identities=6% Similarity=0.116 Sum_probs=45.2
Q ss_pred EEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeec
Q 008090 218 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPY 297 (578)
Q Consensus 218 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 297 (578)
.+.+..|+.+||++--... . |.|+| |...-....-||..-.+.++++++ |.|...|.-+
T Consensus 140 el~lP~g~pV~~~ltS~DV--i-------HSF~V---------P~l~~K~DaiPG~~n~~~~~~~~~---G~y~g~CaE~ 198 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNSV--M-------NSFFI---------PQLGSQIYAMAGMQTKLHLIANEP---GVYDGISANY 198 (226)
T ss_pred eEEEECCCEEEEEEEECch--h-------hhhhh---------hhcCCeeecCCCceEEEEEEeCCC---EEEEEEchhh
Confidence 5788888888888765542 2 33444 444445566699999999999988 9999999876
Q ss_pred CCC
Q 008090 298 FSG 300 (578)
Q Consensus 298 ~~~ 300 (578)
++.
T Consensus 199 CG~ 201 (226)
T TIGR01433 199 SGP 201 (226)
T ss_pred cCc
Confidence 554
No 108
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=36.35 E-value=1.4e+02 Score=31.28 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=42.7
Q ss_pred eeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEe
Q 008090 216 TYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQAR 295 (578)
Q Consensus 216 ~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~ 295 (578)
...+++++|+ ++|.+.|.+... . .|.++ +|..+. ...=.|.||.+..+.+.+ .+ |+|.+.|.
T Consensus 43 p~~~tVpAG~-~~f~V~N~~~~~-~-------Efe~~--~~~~vv---~e~EnIaPG~s~~l~~~L-~p---GtY~~~C~ 104 (375)
T PRK10378 43 PMTLTVNAGK-TQFIIQNHSQKA-L-------EWEIL--KGVMVV---EERENIAPGFSQKMTANL-QP---GEYDMTCG 104 (375)
T ss_pred cCceeeCCCC-EEEEEEeCCCCc-c-------eEEee--cccccc---ccccccCCCCceEEEEec-CC---ceEEeecC
Confidence 3578999996 999999998544 2 23333 222110 112389999888888777 45 99999995
Q ss_pred e
Q 008090 296 P 296 (578)
Q Consensus 296 ~ 296 (578)
+
T Consensus 105 ~ 105 (375)
T PRK10378 105 L 105 (375)
T ss_pred c
Confidence 4
No 109
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=36.11 E-value=89 Score=32.35 Aligned_cols=98 Identities=16% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcccccccee--------EEEEEE-EEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEe
Q 008090 10 ASMSVLLLGLCFLALLPEFAAGIT--------RHYTFN-IKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTN 80 (578)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~-~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N 80 (578)
|++-.++++.+.++.+...+.+.. ..=.+. |........-....+..-+=++||=+++ +.++++|
T Consensus 200 rkv~~~~~~~tl~lV~~g~~~t~~~yP~tIPlQag~~~~i~pl~~~~~~V~~~v~~A~Y~vpgR~l~------~~l~VtN 273 (381)
T PF04744_consen 200 RKVGIAFLAGTLVLVIGGYAYTNSKYPITIPLQAGLLRPIKPLPVPPNSVKVKVTDATYRVPGRTLT------MTLTVTN 273 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHSSSS------S-BS------SS-SSEEEEEEEEEEESSSSEEE------EEEEEEE
T ss_pred ceeehhHHHHHHHHHhhhHhhhhhcCCCccccccccccCcccCCCCCCceEEEEeccEEecCCcEEE------EEEEEEc
Q ss_pred CCCC---------------------------ceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEE
Q 008090 81 HVSN---------------------------NVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTI 124 (578)
Q Consensus 81 ~l~~---------------------------~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~ 124 (578)
..+. ...+---|+.+.+. .||+|||+++.+..+
T Consensus 274 ~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~-----------~pI~PGETrtl~V~a 333 (381)
T PF04744_consen 274 NGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN-----------SPIAPGETRTLTVEA 333 (381)
T ss_dssp ESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES-------------S-B-TT-EEEEEEEE
T ss_pred CCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC-----------CCcCCCceEEEEEEe
No 110
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=35.83 E-value=1.2e+02 Score=29.38 Aligned_cols=78 Identities=14% Similarity=0.301 Sum_probs=55.4
Q ss_pred CeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEE
Q 008090 452 GTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFF 531 (578)
Q Consensus 452 ~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ 531 (578)
..+.+.++.|+.+++.+...+ .. |.|+|-+.|. ..|.+ ||-...+.|.
T Consensus 138 ~~n~lvlP~~~~v~~~~tS~D----Vi-------Hsf~ip~lg~------------------k~dai---PG~~~~~~~~ 185 (227)
T MTH00098 138 VDNRVVLPMEMPIRMLISSED----VL-------HSWAVPSLGL------------------KTDAI---PGRLNQTTLM 185 (227)
T ss_pred ccceEEecCCCEEEEEEEECc----cc-------cccccccccc------------------ceecC---CCceEEEEEe
Confidence 345678999999999998754 34 4566644431 13433 6888888999
Q ss_pred ccCceeeEEeeechhhh-hccceEEEEEecC
Q 008090 532 ADNPGVWFMHCHLDVHT-SWGLRMAWIVQNG 561 (578)
Q Consensus 532 adnpG~wl~HCHil~H~-d~GM~~~~~V~~~ 561 (578)
++.||.+..-|.-+-.. +.-|-..++|.++
T Consensus 186 ~~~~G~~~g~Cse~CG~~H~~M~~~v~v~~~ 216 (227)
T MTH00098 186 STRPGLYYGQCSEICGSNHSFMPIVLELVPL 216 (227)
T ss_pred cCCcEEEEEECccccCcCcCCceEEEEEeCH
Confidence 99999999999876654 4667777776643
No 111
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=35.78 E-value=1.1e+02 Score=29.73 Aligned_cols=62 Identities=13% Similarity=0.095 Sum_probs=42.9
Q ss_pred EEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeec
Q 008090 218 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPY 297 (578)
Q Consensus 218 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 297 (578)
.+.+..|+.+||++.-.- -. |.|.| |...-.+..-||..-.+.+.++++ |.|...|.-+
T Consensus 141 ~lvlP~~~~v~~~~tS~D--Vi-------Hsf~i---------p~lg~k~daiPG~~~~~~~~~~~~---G~~~g~Cse~ 199 (227)
T MTH00098 141 RVVLPMEMPIRMLISSED--VL-------HSWAV---------PSLGLKTDAIPGRLNQTTLMSTRP---GLYYGQCSEI 199 (227)
T ss_pred eEEecCCCEEEEEEEECc--cc-------ccccc---------cccccceecCCCceEEEEEecCCc---EEEEEECccc
Confidence 478888999998886554 23 33333 322223445589988999988888 9999999865
Q ss_pred CCC
Q 008090 298 FSG 300 (578)
Q Consensus 298 ~~~ 300 (578)
++.
T Consensus 200 CG~ 202 (227)
T MTH00098 200 CGS 202 (227)
T ss_pred cCc
Confidence 543
No 112
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.66 E-value=93 Score=30.27 Aligned_cols=62 Identities=15% Similarity=0.135 Sum_probs=43.3
Q ss_pred EEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeec
Q 008090 218 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPY 297 (578)
Q Consensus 218 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 297 (578)
.+.+..|+.+||++.-.- -. |.|.+ |...-.+..-||.+-.+.+.++++ |.|...|..+
T Consensus 141 ~lvlP~~~~v~~~~tS~D--Vi-------Hsf~i---------p~~~~k~da~PG~~~~~~~~~~~~---G~~~g~C~e~ 199 (230)
T MTH00129 141 RMVVPVESPIRVLVSAED--VL-------HSWAV---------PALGVKMDAVPGRLNQTAFIASRP---GVFYGQCSEI 199 (230)
T ss_pred eEEEecCcEEEEEEEeCc--cc-------cceec---------cccCCccccCCCceEEEEEEeCCc---eEEEEEChhh
Confidence 478888999998886554 23 44444 222223455689999999999888 9999999866
Q ss_pred CCC
Q 008090 298 FSG 300 (578)
Q Consensus 298 ~~~ 300 (578)
++.
T Consensus 200 CG~ 202 (230)
T MTH00129 200 CGA 202 (230)
T ss_pred ccc
Confidence 543
No 113
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=35.65 E-value=91 Score=27.29 Aligned_cols=49 Identities=10% Similarity=0.205 Sum_probs=33.0
Q ss_pred EEEEEEEecCCCCeEEEEEcCceEEEEeecCCcc----cceEecEEEeCCCceEEE
Q 008090 226 TYLLRLINAALNDELFFSIANHTLTVVEADAVYV----KPFDTDKLLITPGQTANV 277 (578)
Q Consensus 226 ~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v----~P~~~d~v~l~pgeR~dv 277 (578)
.|++||.|.+.. .+.|-...+.+...||... +.+....=.|.|||.+..
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 489999998843 2567788888888888632 123334557778776544
No 114
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=35.50 E-value=24 Score=29.19 Aligned_cols=9 Identities=22% Similarity=0.198 Sum_probs=3.4
Q ss_pred Hhccccccc
Q 008090 23 ALLPEFAAG 31 (578)
Q Consensus 23 ~~~~~~~~~ 31 (578)
+|.++.++|
T Consensus 17 LlisSevaa 25 (95)
T PF07172_consen 17 LLISSEVAA 25 (95)
T ss_pred HHHHhhhhh
Confidence 333333333
No 115
>COG3241 Azurin [Energy production and conversion]
Probab=35.43 E-value=44 Score=28.63 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=30.9
Q ss_pred cCCcccc----eEecEEEeCCCceEEEEEEcCCCCCCCceEEEEe
Q 008090 255 DAVYVKP----FDTDKLLITPGQTANVLLRTKPYFPNATFFMQAR 295 (578)
Q Consensus 255 DG~~v~P----~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~ 295 (578)
|-.|++| +...+-+|+-|||-++.|+..+-..|-.|++-|.
T Consensus 91 d~dYvkpdD~RViAHTklIGgGE~~S~Tfd~~kL~~g~~Y~FfCt 135 (151)
T COG3241 91 DTDYVKPDDARVIAHTKLIGGGEETSLTFDPAKLADGVEYKFFCT 135 (151)
T ss_pred ccccCCCCCcceEEEeeeecCCccceEecCHHHhcCCceEEEEEe
Confidence 3355654 3457889999999999998877544458999997
No 116
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=34.21 E-value=2.2e+02 Score=24.53 Aligned_cols=62 Identities=18% Similarity=0.304 Sum_probs=34.9
Q ss_pred cEEEEecCCEEEEEEEeCCC-----CceeEEEe--eeeeccC-CCCCCCCCc-cccccCCCCeEEEEEEEc
Q 008090 64 PSLVAREGDRVLIKVTNHVS-----NNVTIHWH--GVRQVTS-GWADGPAYV-TQCPIQTGQSYTYNFTIT 125 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~-----~~~siH~H--G~~~~~~-~~~DG~~~~-~q~~i~pG~~~~y~f~~~ 125 (578)
..=.+++|+.+.+.+.=... ..+.+|+. |+..+.. ...|+--.. ..|||.+|++++|.+.++
T Consensus 22 ~PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~~ 92 (123)
T cd00916 22 LPCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSLP 92 (123)
T ss_pred CCCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEeee
Confidence 34456777776666552221 12333333 5444321 114553221 569999999999999864
No 117
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=34.12 E-value=2.5e+02 Score=24.32 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=41.3
Q ss_pred EEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcc-------cceEecEEEeCCCceEEEEEEcCCC
Q 008090 219 LKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYV-------KPFDTDKLLITPGQTANVLLRTKPY 284 (578)
Q Consensus 219 l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v-------~P~~~d~v~l~pgeR~dv~v~~~~~ 284 (578)
|.+.....|+|++-.. ...+|.|+|..+ ++.++..- .+....++.|..|++|+|.|...+.
T Consensus 54 ~~~~~~G~y~f~~~~~---d~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~ 121 (145)
T PF07691_consen 54 FKPPETGTYTFSLTSD---DGARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNR 121 (145)
T ss_dssp EEESSSEEEEEEEEES---SEEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEEC
T ss_pred EecccCceEEEEEEec---ccEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEEC
Confidence 5666666899999833 346678888765 44554432 3456678999999999999987654
No 118
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=33.57 E-value=2.3e+02 Score=24.50 Aligned_cols=62 Identities=23% Similarity=0.397 Sum_probs=36.0
Q ss_pred CcEEEEecCCEEEEEEEeCC---CCceeEEEee----eeec-cCCCCCCCCCccccccCCCCeEEEEEEEc
Q 008090 63 GPSLVAREGDRVLIKVTNHV---SNNVTIHWHG----VRQV-TSGWADGPAYVTQCPIQTGQSYTYNFTIT 125 (578)
Q Consensus 63 gP~i~v~~Gd~v~v~l~N~l---~~~~siH~HG----~~~~-~~~~~DG~~~~~q~~i~pG~~~~y~f~~~ 125 (578)
+..=.+++|..+.+.+.=.. ........|| +..+ +....||--. ..|||..|++++|.+.++
T Consensus 19 ~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~-l~CPl~~G~~~~y~~~~~ 88 (120)
T cd00918 19 GDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKY-VKCPIKKGQHYDIKYTWN 88 (120)
T ss_pred CCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCccc-EeCCCcCCcEEEEEEeee
Confidence 34556777887776665222 2223344444 3332 2112466322 379999999999999874
No 119
>PRK10449 heat-inducible protein; Provisional
Probab=33.26 E-value=48 Score=29.47 Aligned_cols=15 Identities=33% Similarity=0.288 Sum_probs=8.4
Q ss_pred ecCceeeeEEEECCC
Q 008090 46 TRLCHTRNIISVNGQ 60 (578)
Q Consensus 46 ~~~g~~~~~~~~Ng~ 60 (578)
.+.++...+..+||+
T Consensus 29 ~L~~~~W~L~~i~G~ 43 (140)
T PRK10449 29 QLQHHRFVLESVNGK 43 (140)
T ss_pred HcCCceEEEEEECCE
Confidence 344555555566765
No 120
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=32.61 E-value=1.4e+02 Score=22.46 Aligned_cols=47 Identities=15% Similarity=0.331 Sum_probs=28.4
Q ss_pred EEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEE
Q 008090 219 LKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANV 277 (578)
Q Consensus 219 l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv 277 (578)
+++.+|+..+||.-... .+.+.+-.+++.. +|. .+-+.|.+||++.+
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~l 48 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR-EGD------PDDYWLQAGDSLRL 48 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC-CCC------CCCEEECCCCEEEe
Confidence 56778888888855443 3677777777753 442 23345555555443
No 121
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=31.88 E-value=3.7e+02 Score=23.97 Aligned_cols=64 Identities=20% Similarity=0.301 Sum_probs=43.8
Q ss_pred cEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceE-------ecEEEeCCCceE-EEEEEcCCCCCCCceEEEEe
Q 008090 225 KTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFD-------TDKLLITPGQTA-NVLLRTKPYFPNATFFMQAR 295 (578)
Q Consensus 225 ~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~-------~d~v~l~pgeR~-dv~v~~~~~~~~g~y~l~~~ 295 (578)
.+|.|.+.|.|... +.++.-.++|+ +||+.+.|.. .+.+.|.|||-- ++.+.-... |.-.+...
T Consensus 70 ~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~lS---Gyhri~V~ 141 (154)
T COG3354 70 YTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEALS---GYHRIVVS 141 (154)
T ss_pred eEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccCCC---cceEEEEE
Confidence 47999999999543 45778888875 7998875532 256779999988 555544333 55555543
No 122
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=31.65 E-value=65 Score=19.56 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhccc
Q 008090 12 MSVLLLGLCFLALLPE 27 (578)
Q Consensus 12 ~~~~~~~~~~~~~~~~ 27 (578)
|+++|+.++++..++.
T Consensus 7 mKkil~~l~a~~~Lag 22 (25)
T PF08139_consen 7 MKKILFPLLALFMLAG 22 (25)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3444444444443333
No 123
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.43 E-value=1.3e+02 Score=29.43 Aligned_cols=62 Identities=19% Similarity=0.178 Sum_probs=43.5
Q ss_pred EEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeec
Q 008090 218 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPY 297 (578)
Q Consensus 218 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 297 (578)
.+.+..|+.+|+++..+- -. |.|.| |...-.+..-||..-.+.+.++.+ |.|...|.-+
T Consensus 145 ~lvlP~~~~v~~~itS~D--Vi-------Hsf~v---------p~lg~k~daiPG~~~~~~~~~~~~---G~y~g~Cse~ 203 (234)
T MTH00051 145 RLIVPIQTQVRVLVTAAD--VL-------HSFAV---------PSLSVKIDAVPGRLNQTSFFIKRP---GVFYGQCSEI 203 (234)
T ss_pred EEEEecCcEEEEEEEeCc--hh-------ccccc---------cccCceeEccCCceEeEEEEeCCC---EEEEEEChhh
Confidence 478889999999998764 23 33443 222222445588888888888887 9999999865
Q ss_pred CCC
Q 008090 298 FSG 300 (578)
Q Consensus 298 ~~~ 300 (578)
++.
T Consensus 204 CG~ 206 (234)
T MTH00051 204 CGA 206 (234)
T ss_pred cCc
Confidence 543
No 124
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=31.15 E-value=2e+02 Score=27.89 Aligned_cols=78 Identities=18% Similarity=0.309 Sum_probs=55.1
Q ss_pred CeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEE
Q 008090 452 GTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFF 531 (578)
Q Consensus 452 ~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ 531 (578)
..+...++.|+.+++.+.+.+ ..|. |+|-+.|. ..|. -||-...+.|.
T Consensus 138 vdn~lvlP~~~~v~~~~tS~D----ViHs-------f~vP~~~~------------------k~da---iPG~~~~~~~~ 185 (228)
T MTH00008 138 VDNRAVLPMQTEIRVLVTAAD----VIHS-------WTVPSLGV------------------KVDA---VPGRLNQIGFT 185 (228)
T ss_pred cCceEEEecCCEEEEEEEeCC----cccc-------ccccccCc------------------ceec---CCCceEEEEEE
Confidence 345678899999999999854 4554 55543321 1233 36888888899
Q ss_pred ccCceeeEEeeechhhh-hccceEEEEEecC
Q 008090 532 ADNPGVWFMHCHLDVHT-SWGLRMAWIVQNG 561 (578)
Q Consensus 532 adnpG~wl~HCHil~H~-d~GM~~~~~V~~~ 561 (578)
++.||.+..-|--+-.. +.-|-..++|.+.
T Consensus 186 ~~~~G~~~g~Cse~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00008 186 ITRPGVFYGQCSEICGANHSFMPIVLEAVDT 216 (228)
T ss_pred eCCCEEEEEEChhhcCcCccCceeEEEEECH
Confidence 99999999999876655 5667777776653
No 125
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.75 E-value=1.6e+02 Score=28.75 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=42.9
Q ss_pred EEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeec
Q 008090 218 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPY 297 (578)
Q Consensus 218 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 297 (578)
.+.+..|+.+|+++.-.. -. |.|.+ |...-.+..-||..-.+.+.++++ |.|...|.-+
T Consensus 141 ~lvlP~~~~v~~~~tS~D--Vi-------Hsf~i---------P~lg~k~daiPG~~~~~~~~~~~~---G~~~g~Cse~ 199 (230)
T MTH00185 141 RMVVPMESPIRVLITAED--VL-------HSWTV---------PALGVKMDAVPGRLNQATFIISRP---GLYYGQCSEI 199 (230)
T ss_pred eEEEecCCEEEEEEEcCc--cc-------ccccc---------cccCceeEecCCceEEEEEEeCCc---EEEEEEchhh
Confidence 477888998988886544 33 33333 322333455688888888888888 9999999866
Q ss_pred CCC
Q 008090 298 FSG 300 (578)
Q Consensus 298 ~~~ 300 (578)
++.
T Consensus 200 CG~ 202 (230)
T MTH00185 200 CGA 202 (230)
T ss_pred cCc
Confidence 554
No 126
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=29.87 E-value=1.1e+02 Score=29.38 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=45.0
Q ss_pred EEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeec
Q 008090 218 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPY 297 (578)
Q Consensus 218 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 297 (578)
.+.+..|+.+||++-.... . |.|.| |...-....-||..-.+.++++++ |.|...|.-+
T Consensus 131 ~l~iP~g~~v~~~ltS~DV--i-------Hsf~v---------P~l~~k~daiPG~~~~~~~~~~~~---G~y~g~Cae~ 189 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQSADT--M-------TSFWI---------PQLGGQKYAMTGMTMNWYLQADQV---GTYRGRNANF 189 (217)
T ss_pred cEEEECCCEEEEEEECCch--h-------hhhhc---------hhhCceeecCCCceEEEEEEeCCC---EEEEEEehhh
Confidence 4778888888888865542 2 33333 544455566699999999999988 9999999866
Q ss_pred CCC
Q 008090 298 FSG 300 (578)
Q Consensus 298 ~~~ 300 (578)
++.
T Consensus 190 CG~ 192 (217)
T TIGR01432 190 NGE 192 (217)
T ss_pred cCc
Confidence 544
No 127
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=29.79 E-value=3.1e+02 Score=23.92 Aligned_cols=54 Identities=13% Similarity=0.282 Sum_probs=42.0
Q ss_pred EEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCC
Q 008090 227 YLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPY 284 (578)
Q Consensus 227 ~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~ 284 (578)
..|-+-|.+....+.+ .+......||+.++.+...-+.|.|-+..+++|+-+..
T Consensus 27 ~tLSiRNtd~~~~i~i----~~v~Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV~e~D~ 80 (125)
T PF11322_consen 27 ATLSIRNTDPTDPIYI----TSVDYYDTDGKLVRSYLDKPIYLKPLATTEFVVEESDT 80 (125)
T ss_pred EEEEEEcCCCCCCEEE----EEEEEECCCCeEhHHhcCCCeEcCCCceEEEEEecccC
Confidence 4566778776555433 25566788999999898899999999999999987653
No 128
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=29.58 E-value=42 Score=26.85 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=25.1
Q ss_pred eeeeEEEECCCCCCcEEEEecCCEEEEE
Q 008090 50 HTRNIISVNGQFPGPSLVAREGDRVLIK 77 (578)
Q Consensus 50 ~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~ 77 (578)
.+...+.+||+.-++.-+++.||+|.|.
T Consensus 47 tEV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 47 TEVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred HHeEEEEECCEECCCcccCCCCCEEEEE
Confidence 4788899999998899999999999874
No 129
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=28.95 E-value=2.1e+02 Score=27.97 Aligned_cols=78 Identities=21% Similarity=0.364 Sum_probs=55.4
Q ss_pred CeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEE
Q 008090 452 GTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFF 531 (578)
Q Consensus 452 ~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ 531 (578)
..+.+.++.|+.+++.+...+ .-|. |+|-+.+ ..+|.+ ||-...+.|.
T Consensus 149 ~~n~lvlP~~~~v~~~~tS~D----ViHs-------f~iP~lg------------------vK~Dai---PG~~n~~~~~ 196 (240)
T MTH00023 149 VDNRLVVPINTHVRILVTGAD----VLHS-------FAVPSLG------------------LKIDAV---PGRLNQTGFF 196 (240)
T ss_pred cCceEEEecCCEEEEEEEcCC----cccc-------eeecccC------------------ceeecC---CCcceeEEEE
Confidence 345688999999999998743 5555 4554332 124443 5777788899
Q ss_pred ccCceeeEEeeechhhh-hccceEEEEEecC
Q 008090 532 ADNPGVWFMHCHLDVHT-SWGLRMAWIVQNG 561 (578)
Q Consensus 532 adnpG~wl~HCHil~H~-d~GM~~~~~V~~~ 561 (578)
++.||.+.-.|.-+-.. +.-|-..++|.++
T Consensus 197 ~~~~G~y~g~C~e~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 197 IKRPGVFYGQCSEICGANHSFMPIVIEAVSL 227 (240)
T ss_pred cCCCEEEEEEchhhcCcCccCCeEEEEEECH
Confidence 99999999999877655 5667777777654
No 130
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=28.74 E-value=2.6e+02 Score=27.64 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=13.8
Q ss_pred cEEEEecCCEEEEEEEeC
Q 008090 64 PSLVAREGDRVLIKVTNH 81 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~ 81 (578)
|.+|+++|++-.||+...
T Consensus 86 Plfrl~p~~~q~lRI~~~ 103 (253)
T PRK15249 86 PVFRIQPKAGQVVRVIYN 103 (253)
T ss_pred CeEEecCCCceEEEEEEc
Confidence 788999998777776643
No 131
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.61 E-value=2e+02 Score=27.91 Aligned_cols=78 Identities=17% Similarity=0.373 Sum_probs=55.4
Q ss_pred CeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEE
Q 008090 452 GTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFF 531 (578)
Q Consensus 452 ~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ 531 (578)
..+.+.++.|+.+++.+...+ .-|. |+|-+.+ ..+|.+ ||-...+.|.
T Consensus 138 ~~n~l~lP~~~~v~~~~tS~D----ViHs-------f~vP~l~------------------~K~Dai---PG~~n~~~~~ 185 (226)
T MTH00139 138 VDNRLVLPYKSNIRALITAAD----VLHS-------WTVPSLG------------------VKIDAV---PGRLNQVGFF 185 (226)
T ss_pred cCceEEEecCCEEEEEEecCc----cccc-------eeccccC------------------ccccCC---CCcEEEEEEE
Confidence 456678999999999998743 4554 5664443 125655 5778888999
Q ss_pred ccCceeeEEeeechhhh-hccceEEEEEecC
Q 008090 532 ADNPGVWFMHCHLDVHT-SWGLRMAWIVQNG 561 (578)
Q Consensus 532 adnpG~wl~HCHil~H~-d~GM~~~~~V~~~ 561 (578)
++.||.+.--|--+--. +.-|-..++|.++
T Consensus 186 ~~~~G~y~g~CsE~CG~~Hs~M~~~v~vv~~ 216 (226)
T MTH00139 186 INRPGVFYGQCSEICGANHSFMPIVVEAISP 216 (226)
T ss_pred cCCCEEEEEEChhhcCcCcCCCeEEEEEeCH
Confidence 99999999999766544 4556666666543
No 132
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=28.54 E-value=3e+02 Score=21.75 Aligned_cols=15 Identities=13% Similarity=0.268 Sum_probs=11.4
Q ss_pred EeCCcEEEEEEEecC
Q 008090 221 VKPGKTYLLRLINAA 235 (578)
Q Consensus 221 v~~G~~~rlRliN~~ 235 (578)
.+.||+++|++-..-
T Consensus 3 ~~~Ge~v~~~~~~~~ 17 (83)
T PF14326_consen 3 YRVGERVRFRVTSNR 17 (83)
T ss_pred ccCCCEEEEEEEeCC
Confidence 467888888887744
No 133
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=28.28 E-value=3.7e+02 Score=22.73 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=20.6
Q ss_pred ceEEEEeecCCcc--cceEecEEEeCCCceEEEEEEcCC
Q 008090 247 HTLTVVEADAVYV--KPFDTDKLLITPGQTANVLLRTKP 283 (578)
Q Consensus 247 h~~~via~DG~~v--~P~~~d~v~l~pgeR~dv~v~~~~ 283 (578)
+++++...++... .+....++.|.+|..|.+.+.-..
T Consensus 45 ~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~g~~ 83 (122)
T PF14344_consen 45 YTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAVGTA 83 (122)
T ss_pred EEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEECCC
Confidence 4555544444322 234456667777777777765544
No 134
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=28.17 E-value=76 Score=22.49 Aligned_cols=40 Identities=18% Similarity=0.320 Sum_probs=30.3
Q ss_pred CCCccee-eeeCCCcEEEEEEEccCceeeEEeeechhhhhc
Q 008090 511 DPMERNT-IGVPAGGWVAIRFFADNPGVWFMHCHLDVHTSW 550 (578)
Q Consensus 511 ~p~~rDT-v~vpp~g~v~irf~adnpG~wl~HCHil~H~d~ 550 (578)
.|..+-+ |..+.|..+.++++......+=+||..+.|.+.
T Consensus 5 kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 5 KPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 3444443 234568888889999999999999999999764
No 135
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=27.78 E-value=1.7e+02 Score=24.87 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=28.3
Q ss_pred EEEEEEEecCCCC-eEEEEEcCce-EEEEeecCCcccceEecEEEeCCCceEEEEEEcCCC
Q 008090 226 TYLLRLINAALND-ELFFSIANHT-LTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPY 284 (578)
Q Consensus 226 ~~rlRliN~~~~~-~~~~~l~gh~-~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~ 284 (578)
.|+++|+|.+... .+.+.+.|.. +.+ . .....+.|.||+..++-|....+
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l--------~-~~~~~i~v~~g~~~~~~v~v~~p 85 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAEL--------Q-GPENTITVPPGETREVPVFVTAP 85 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE----------ES--EEEE-TT-EEEEEEEEEE-
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEE--------E-CCCcceEECCCCEEEEEEEEEEC
Confidence 4899999999665 4666666632 222 0 13467889999988877766544
No 136
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=27.51 E-value=2.8e+02 Score=25.40 Aligned_cols=62 Identities=11% Similarity=0.021 Sum_probs=41.3
Q ss_pred EEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeec
Q 008090 218 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPY 297 (578)
Q Consensus 218 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 297 (578)
.+.+..|+.+||++.-+- -.+.|.+. ...-.+..-||..-.+.+.+..+ |.|...|.-+
T Consensus 74 ~LvLP~g~~Vr~~lTS~D--VIHSF~VP----------------~lgvK~DavPGr~n~l~~~~~~~---G~y~gqCsEl 132 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATD--VIHSWSVP----------------SLGIKADAIPGRLHKINTFILRE---GVFYGQCSEM 132 (162)
T ss_pred CEEEeCCCEEEEEEEeCc--cceeeecc----------------ccCceeeccCCceEEEEEecCCC---eEEEEEcchh
Confidence 367888888888776544 23444443 22233444578777788888877 9999999976
Q ss_pred CCC
Q 008090 298 FSG 300 (578)
Q Consensus 298 ~~~ 300 (578)
++.
T Consensus 133 CG~ 135 (162)
T PTZ00047 133 CGT 135 (162)
T ss_pred cCc
Confidence 554
No 137
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.25 E-value=5.7e+02 Score=24.66 Aligned_cols=74 Identities=12% Similarity=-0.004 Sum_probs=40.2
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCc-chhc-
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHI-SWLR- 141 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~-~~~~- 141 (578)
..|.+..|..|++.++=.+ .-+|...-.+... +|.+ ||..-...|.+ ..+|+|.--|-- .|..
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViHsf~vP~l~~K----~Dai---------PG~~n~~~~~~-~~~G~y~g~CsE~CG~~H 204 (226)
T MTH00139 140 NRLVLPYKSNIRALITAAD-VLHSWTVPSLGVK----IDAV---------PGRLNQVGFFI-NRPGVFYGQCSEICGANH 204 (226)
T ss_pred ceEEEecCCEEEEEEecCc-cccceeccccCcc----ccCC---------CCcEEEEEEEc-CCCEEEEEEChhhcCcCc
Confidence 4677888888887776553 2222222211111 3443 57777777875 788988665543 1211
Q ss_pred ccceeeEEEeC
Q 008090 142 STLYGPIIILP 152 (578)
Q Consensus 142 ~Gl~G~liV~~ 152 (578)
+-|...+.|.+
T Consensus 205 s~M~~~v~vv~ 215 (226)
T MTH00139 205 SFMPIVVEAIS 215 (226)
T ss_pred CCCeEEEEEeC
Confidence 34544444443
No 138
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=25.96 E-value=1.8e+02 Score=28.25 Aligned_cols=19 Identities=16% Similarity=0.406 Sum_probs=14.0
Q ss_pred CcEEEEecCCEEEEEEEeC
Q 008090 63 GPSLVAREGDRVLIKVTNH 81 (578)
Q Consensus 63 gP~i~v~~Gd~v~v~l~N~ 81 (578)
.|..|+.+|+.-.||+.-.
T Consensus 74 PPlfrl~p~~~q~lRI~~~ 92 (229)
T PRK15211 74 PPFFKVRPKEKQIIRIMKT 92 (229)
T ss_pred CCeEEECCCCceEEEEEEC
Confidence 3788999998777776543
No 139
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.96 E-value=2.5e+02 Score=27.26 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=43.2
Q ss_pred EEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeec
Q 008090 218 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPY 297 (578)
Q Consensus 218 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 297 (578)
.+.+..|+.+||++--+- -. |.|.| |.-.-.+..-||..-.+.+.++++ |.|...|.-+
T Consensus 141 ~lvlP~~~~v~~~~tS~D--Vi-------Hsf~v---------P~lg~K~DavPG~~n~~~~~~~~~---G~y~g~CsE~ 199 (227)
T MTH00117 141 RMVIPMESPIRILITAED--VL-------HSWAV---------PSLGVKTDAVPGRLNQTSFITTRP---GVFYGQCSEI 199 (227)
T ss_pred eEEEecCceEEEEEEecc--hh-------hcccc---------cccCceeEecCCceEEEEEEEccc---ceEEEEeccc
Confidence 478888888998886554 23 34444 322233445589998999998888 9999999866
Q ss_pred CCC
Q 008090 298 FSG 300 (578)
Q Consensus 298 ~~~ 300 (578)
++.
T Consensus 200 CG~ 202 (227)
T MTH00117 200 CGA 202 (227)
T ss_pred ccc
Confidence 544
No 140
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=25.94 E-value=70 Score=28.64 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=21.4
Q ss_pred eeCCCcEEEEEEEc-cCc---eeeEEeeech
Q 008090 519 GVPAGGWVAIRFFA-DNP---GVWFMHCHLD 545 (578)
Q Consensus 519 ~vpp~g~v~irf~a-dnp---G~wl~HCHil 545 (578)
.|+||..+.|.++. .|| |.|+|+|=..
T Consensus 98 PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 98 PVPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 36789999999954 566 8999998644
No 141
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=25.53 E-value=4e+02 Score=22.89 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=36.3
Q ss_pred EEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcc-cceEecEEEeCCCceEEEEEEcCCC
Q 008090 219 LKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYV-KPFDTDKLLITPGQTANVLLRTKPY 284 (578)
Q Consensus 219 l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v-~P~~~d~v~l~pgeR~dv~v~~~~~ 284 (578)
+.+.....|+|.+... ....+.|+|.. |++.++..- .+.....+.|..|++|.|.|...+.
T Consensus 52 i~~~~~G~y~f~~~~~---~~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~ 113 (136)
T smart00758 52 LKPPEDGEYTFSITSD---DGARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEA 113 (136)
T ss_pred EECCCCccEEEEEEcC---CcEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeC
Confidence 4454445688888433 34567788753 344333221 2233456888888888888877554
No 142
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=23.42 E-value=1.6e+02 Score=30.17 Aligned_cols=62 Identities=8% Similarity=0.140 Sum_probs=47.8
Q ss_pred EEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeec
Q 008090 218 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPY 297 (578)
Q Consensus 218 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 297 (578)
.+.+..|+.+||++--.... |.|.| |...-.+..-||.+-.+.+.++++ |.|...|..+
T Consensus 152 eL~iP~g~pV~f~lTS~DVi---------HSF~I---------P~Lg~K~damPG~~n~l~~~a~~~---G~Y~G~CaEy 210 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNSVM---------NSFFI---------PRLGSQIYAMAGMQTRLHLIANEP---GTYDGISASY 210 (315)
T ss_pred cEEEecCCEEEEEEEEchhh---------hhhhh---------hhhCCeeecCCCceeEEEEEcCCC---EEEEEEChhh
Confidence 47889999999999876643 33333 555566777799999999999988 9999999876
Q ss_pred CCC
Q 008090 298 FSG 300 (578)
Q Consensus 298 ~~~ 300 (578)
++.
T Consensus 211 CG~ 213 (315)
T PRK10525 211 SGP 213 (315)
T ss_pred cCc
Confidence 554
No 143
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.25 E-value=2.9e+02 Score=26.78 Aligned_cols=78 Identities=18% Similarity=0.369 Sum_probs=54.7
Q ss_pred CeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEE
Q 008090 452 GTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFF 531 (578)
Q Consensus 452 ~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ 531 (578)
..+.+.++.|+.+++.+...+ .-|. |+|-+.+ ..+|.+ ||-...+.|.
T Consensus 138 ~dn~l~lP~~~~v~~~~tS~D----ViHs-------f~vp~l~------------------~k~dav---PG~~~~~~~~ 185 (227)
T MTH00154 138 VDNRLVLPMNTQIRILITAAD----VIHS-------WTVPSLG------------------VKVDAV---PGRLNQLNFL 185 (227)
T ss_pred ccceEEEecCCEEEEEEEcCc----hhhh-------eeccccC------------------CeeecC---CCceEEEEEE
Confidence 345678999999999998743 4454 5554432 124544 6888888999
Q ss_pred ccCceeeEEeeechhhh-hccceEEEEEecC
Q 008090 532 ADNPGVWFMHCHLDVHT-SWGLRMAWIVQNG 561 (578)
Q Consensus 532 adnpG~wl~HCHil~H~-d~GM~~~~~V~~~ 561 (578)
++.||.+.--|--+--. +.-|-..++|.++
T Consensus 186 ~~~~G~y~g~Cse~CG~~H~~M~~~v~vv~~ 216 (227)
T MTH00154 186 INRPGLFFGQCSEICGANHSFMPIVIESVSV 216 (227)
T ss_pred EcCceEEEEEeechhCcCccCCeEEEEEeCH
Confidence 99999999999866533 4566677766643
No 144
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=22.84 E-value=58 Score=24.83 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=18.2
Q ss_pred eeeeEEEECCCCCC---cEEEEecCCEEEE
Q 008090 50 HTRNIISVNGQFPG---PSLVAREGDRVLI 76 (578)
Q Consensus 50 ~~~~~~~~Ng~~pg---P~i~v~~Gd~v~v 76 (578)
...+++.+||+++- -.+.++.||+|+.
T Consensus 38 ~~~W~~~vNG~~~~~ga~~~~l~~GD~i~~ 67 (68)
T PF14478_consen 38 GSYWMYYVNGESANVGAGSYKLKDGDKITW 67 (68)
T ss_dssp TEEEEEEETTEE-SS-CCC-B--TTEEEEE
T ss_pred CceeEEEECCEEhhcCcceeEeCCCCEEEe
Confidence 35788899999873 4789999999875
No 145
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=22.62 E-value=6.6e+02 Score=28.81 Aligned_cols=66 Identities=11% Similarity=0.159 Sum_probs=42.6
Q ss_pred CCcEEEEec---CCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecC
Q 008090 62 PGPSLVARE---GDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAH 136 (578)
Q Consensus 62 pgP~i~v~~---Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H 136 (578)
+.|.++++. ...|+|+|.|.-..+..+|..-... .++.| -+..|.+|.+.+..|.+ ...+ -||---
T Consensus 592 ~~~~~~~~~d~a~G~L~L~L~N~G~~a~~ftV~d~~Y-----~~~~p--r~ytV~aG~~~~~~w~l-~~s~-GWYDLt 660 (690)
T TIGR03396 592 AVPEVRVCYDVANGNLYLTLSNAGRSPVTVTVTDNAY-----GGAGP--RTVTVAPGQRVELHWDL-SASG-GWYDFT 660 (690)
T ss_pred CCCceEEEEecCCCEEEEEEEeCCCCcEEEEEEeCCC-----CCCCC--EEEEECCCCEEEEEEec-cCCC-CceEEE
Confidence 346666654 4569999999988888877763221 22222 24668999999999986 3223 677433
No 146
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.39 E-value=2.5e+02 Score=27.25 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=0.0
Q ss_pred EEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeec
Q 008090 218 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPY 297 (578)
Q Consensus 218 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 297 (578)
.+.+..|+.+||++.-.-.. |.|.| |...-.+..-||..-.+.+.++++ |.|...|..+
T Consensus 141 ~l~lP~~~~v~~~~tS~DVi---------Hsf~v---------P~lg~k~da~PG~~n~~~~~~~~~---G~~~g~C~e~ 199 (228)
T MTH00076 141 RMVVPMESPIRMLITAEDVL---------HSWAV---------PSLGIKTDAIPGRLNQTSFIASRP---GVYYGQCSEI 199 (228)
T ss_pred eEEEecCCEEEEEEEecccc---------ccccc---------cccCceEEccCCcceeEEEEeCCc---EEEEEEChhh
Q ss_pred CC
Q 008090 298 FS 299 (578)
Q Consensus 298 ~~ 299 (578)
++
T Consensus 200 CG 201 (228)
T MTH00076 200 CG 201 (228)
T ss_pred cC
No 147
>PRK11372 lysozyme inhibitor; Provisional
Probab=22.23 E-value=2.5e+02 Score=23.84 Aligned_cols=18 Identities=28% Similarity=0.012 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhccccc
Q 008090 12 MSVLLLGLCFLALLPEFA 29 (578)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~ 29 (578)
|+.+|+++++++|.+|..
T Consensus 3 mk~ll~~~~~~lL~gCs~ 20 (109)
T PRK11372 3 MKKLLIICLPVLLTGCSA 20 (109)
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 454555555555555543
No 148
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.20 E-value=2.6e+02 Score=27.83 Aligned_cols=78 Identities=15% Similarity=0.288 Sum_probs=55.7
Q ss_pred CeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEE
Q 008090 452 GTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFF 531 (578)
Q Consensus 452 ~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ 531 (578)
..+.+.++.|+.+++.+...+ .-| .|+|-+.+. .+|.+ ||-.-.+.|.
T Consensus 172 vdn~lvlP~~~~v~~~ltS~D----ViH-------Sf~vP~lgv------------------K~Dai---PGr~n~~~~~ 219 (262)
T MTH00027 172 VDNRLILPVDTNVRVLITAAD----VLH-------SWTVPSLAV------------------KMDAV---PGRINETGFL 219 (262)
T ss_pred EeceEEEeeCcEEEEEEEcCc----ccc-------ceecccccC------------------cccCC---CCceeeEEEE
Confidence 345678999999999998743 444 466644431 24544 5677788899
Q ss_pred ccCceeeEEeeechhhh-hccceEEEEEecC
Q 008090 532 ADNPGVWFMHCHLDVHT-SWGLRMAWIVQNG 561 (578)
Q Consensus 532 adnpG~wl~HCHil~H~-d~GM~~~~~V~~~ 561 (578)
++.||.+.-.|.-+--. +..|-..++|.+.
T Consensus 220 ~~~~G~y~g~CsE~CG~~Hs~Mpi~v~vv~~ 250 (262)
T MTH00027 220 IKRPGIFYGQCSEICGANHSFMPIVVESVSL 250 (262)
T ss_pred cCCcEEEEEEcchhcCcCcCCCeEEEEEECH
Confidence 99999999999976633 5778777777653
No 149
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.15 E-value=3.9e+02 Score=25.97 Aligned_cols=77 Identities=12% Similarity=0.293 Sum_probs=54.2
Q ss_pred CeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEE
Q 008090 452 GTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFF 531 (578)
Q Consensus 452 ~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ 531 (578)
..+...++.|+.+++.+...+ .. |.|+|-+.|. ..|.+ ||....+.+.
T Consensus 138 ~~n~lvlP~~~~v~~~~tS~D----Vi-------Hsf~iP~lg~------------------k~dai---PG~~~~~~~~ 185 (230)
T MTH00185 138 TDHRMVVPMESPIRVLITAED----VL-------HSWTVPALGV------------------KMDAV---PGRLNQATFI 185 (230)
T ss_pred cCCeEEEecCCEEEEEEEcCc----cc-------ccccccccCc------------------eeEec---CCceEEEEEE
Confidence 455678999999999998754 34 4466644431 13433 6778888899
Q ss_pred ccCceeeEEeeechhhh-hccceEEEEEec
Q 008090 532 ADNPGVWFMHCHLDVHT-SWGLRMAWIVQN 560 (578)
Q Consensus 532 adnpG~wl~HCHil~H~-d~GM~~~~~V~~ 560 (578)
++.||.+.--|.-+-.. +.-|-..++|.+
T Consensus 186 ~~~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (230)
T MTH00185 186 ISRPGLYYGQCSEICGANHSFMPIVVEAVP 215 (230)
T ss_pred eCCcEEEEEEchhhcCcCcCCCeEEEEEEC
Confidence 99999999999876655 455666666654
No 150
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=20.56 E-value=59 Score=27.17 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=38.6
Q ss_pred chhhhHHHHHHHHHHHHHHhccccccceeEEEEEEEEEEeeecC-cee-eeEEEECCCCCCcEEEEecCCEEEEEEEeCC
Q 008090 5 HLPSFASMSVLLLGLCFLALLPEFAAGITRHYTFNIKYHNVTRL-CHT-RNIISVNGQFPGPSLVAREGDRVLIKVTNHV 82 (578)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-g~~-~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l 82 (578)
|-|.||-+..++.+++.++.+....-+.+-...++........+ +.. .....-+|-- +.=...+|+.+.|++.|..
T Consensus 3 ~yp~WKyllil~vl~~~~lyALPnlyge~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~--~k~i~~~~~~llirf~~~~ 80 (101)
T PF13721_consen 3 RYPLWKYLLILVVLLLGALYALPNLYGEDPAVQISASSAGVQLPDAFQVEQALKAAGIA--VKSIEQEGDSLLIRFDSTD 80 (101)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhhccCCCCcEEEecCCCCccCChHHHHHHHHHHCCCC--cceEEeeCCEEEEEECCHH
Confidence 56789887544444443333333334444445555543333332 211 1122223322 3334478899999998864
No 151
>PF15284 PAGK: Phage-encoded virulence factor
Probab=20.53 E-value=68 Score=23.91 Aligned_cols=27 Identities=19% Similarity=0.075 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHhccccccceeE
Q 008090 8 SFASMSVLLLGLCFLALLPEFAAGITR 34 (578)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (578)
+++++.-.|+|++.++.|++.+.|++.
T Consensus 3 k~ksifL~l~~~LsA~~FSasamAa~~ 29 (61)
T PF15284_consen 3 KFKSIFLALVFILSAAGFSASAMAADS 29 (61)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhh
Confidence 456654445555555667776755543
No 152
>PF02102 Peptidase_M35: Deuterolysin metalloprotease (M35) family; InterPro: IPR001384 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M35 (deuterolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Deuterolysin is a microbial zinc-containing metalloprotease that shows some similarity to thermolysin []. The protein is expressed with a possible 19-residue signal sequence, a 155-residue propeptide, and an active peptide of 177 residues []. The latter contains an HEXXH motif towards the C terminus, but the other zinc ligands are as yet undetermined [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 1EB6_A.
Probab=20.23 E-value=34 Score=35.56 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=0.0
Q ss_pred ceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeee
Q 008090 85 NVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWH 134 (578)
Q Consensus 85 ~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH 134 (578)
...+-|.|+..... +++...-.-..|+||++.+-+|++ +.+|+..
T Consensus 77 g~~V~F~Gi~~~~~--~~~L~~d~F~~L~pG~sve~~fDi---A~~~dLs 121 (359)
T PF02102_consen 77 GKEVPFTGIRLRYD--TSGLTEDAFQTLAPGESVEVEFDI---AETHDLS 121 (359)
T ss_dssp --------------------------------------------------
T ss_pred CcccccccEEEEEe--cCCCCHHHceecCCCCeEEEEEcc---hheeecC
Confidence 45566778876655 566443344679999999999987 4577663
No 153
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=20.16 E-value=4.1e+02 Score=25.75 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcccccccee-------------EEEEEEEEEEeeecCceeeeEEEECCC--------CCCcEEEEe
Q 008090 11 SMSVLLLGLCFLALLPEFAAGIT-------------RHYTFNIKYHNVTRLCHTRNIISVNGQ--------FPGPSLVAR 69 (578)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~~~~g~~~~~~~~Ng~--------~pgP~i~v~ 69 (578)
.|...+++++++++.+..++|.. +.-.+++++..-.+ ...+.|.-++. +-.|.++++
T Consensus 4 ~~~~~~~~~~l~~~~~~~a~a~v~l~~tRvi~~~~~~~~si~v~N~~~~p--~lvQ~wv~~~~~~~~~~fivtPPl~rl~ 81 (230)
T PRK09918 4 NLFFLFTALVLLSSSSAVHAAGMVPETSVVIVEESDGEGSINVKNTDSNP--ILLYTTLVDLPEDKSKLLLVTPPVARVE 81 (230)
T ss_pred hhHHHHHHHHHHHhhhHhhEeeEEEccEEEEEECCCCeEEEEEEcCCCCc--EEEEEEEecCCCCCCCCEEEcCCeEEEC
Q ss_pred cCCEEEEEEE
Q 008090 70 EGDRVLIKVT 79 (578)
Q Consensus 70 ~Gd~v~v~l~ 79 (578)
+|+.-.||+.
T Consensus 82 pg~~q~vRii 91 (230)
T PRK09918 82 PGQSQQVRFI 91 (230)
T ss_pred CCCceEEEEE
Done!