Query 008090
Match_columns 578
No_of_seqs 176 out of 1743
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 17:53:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1aoz_A Ascorbate oxidase; oxid 100.0 1.6E-98 6E-103 824.0 55.7 512 31-578 1-538 (552)
2 3sqr_A Laccase; multicopper ox 100.0 2.3E-93 7.9E-98 776.6 53.5 464 30-561 64-545 (580)
3 1v10_A Laccase; multicopper bl 100.0 4.2E-92 1.4E-96 766.8 44.1 478 27-578 17-508 (521)
4 1zpu_A Iron transport multicop 100.0 1.7E-91 5.9E-96 762.7 47.8 461 32-560 1-481 (534)
5 3pxl_A Laccase; 4-copper prote 100.0 4.9E-91 1.7E-95 750.2 46.6 456 34-559 4-470 (499)
6 3t6v_A Laccase; beta barrel, o 100.0 8.6E-90 3E-94 740.6 52.3 457 34-560 5-471 (495)
7 2q9o_A Laccase-1; multicopper 100.0 6.6E-88 2.2E-92 739.1 53.9 472 28-561 28-522 (559)
8 1hfu_A Laccase 1; oxidoreducta 100.0 8.5E-89 2.9E-93 738.3 41.2 469 34-578 5-487 (503)
9 2xu9_A Laccase; oxidoreductase 100.0 2.9E-81 1E-85 669.1 40.1 402 30-559 13-439 (439)
10 2uxt_A Protein SUFI, SUFI; oxi 100.0 4.5E-81 1.5E-85 668.4 33.7 405 33-562 18-443 (451)
11 3abg_A Bilirubin oxidase; clea 100.0 3E-78 1E-82 657.2 39.8 421 33-562 36-477 (534)
12 2wsd_A Spore coat protein A; o 100.0 1.2E-77 4.1E-82 652.4 41.4 430 33-561 25-511 (513)
13 3zx1_A Oxidoreductase, putativ 100.0 1.9E-77 6.6E-82 640.2 41.7 414 29-559 46-480 (481)
14 3aw5_A Multicopper oxidase; be 100.0 6.6E-77 2.3E-81 635.1 32.6 392 33-559 20-448 (448)
15 3gyr_A PHS, phenoxazinone synt 100.0 3.2E-76 1.1E-80 659.0 38.9 461 32-562 31-593 (612)
16 3od3_A Blue copper oxidase CUE 100.0 2.2E-75 7.5E-80 623.9 35.1 428 32-558 16-488 (488)
17 2g23_A PHS, phenoxazinone synt 100.0 1.3E-73 4.6E-78 625.0 40.8 458 32-561 31-592 (612)
18 3g5w_A Multicopper oxidase typ 100.0 5.9E-53 2E-57 430.5 29.7 271 32-319 1-278 (318)
19 2zwn_A Two-domain type laccase 100.0 2.6E-51 8.7E-56 423.0 33.5 271 32-319 2-279 (339)
20 2r7e_A Coagulation factor VIII 100.0 2.6E-53 8.8E-58 476.5 16.8 239 35-297 48-314 (742)
21 2j5w_A Ceruloplasmin, ferroxid 100.0 4.4E-51 1.5E-55 476.6 35.7 460 25-562 13-563 (1065)
22 2dv6_A Nitrite reductase; elec 100.0 3.6E-48 1.2E-52 415.9 27.8 402 30-564 25-437 (447)
23 3gdc_A Multicopper oxidase; be 100.0 2E-47 7E-52 385.0 28.3 235 30-296 31-272 (288)
24 1kbv_A ANIA, major outer membr 100.0 1.6E-47 5.4E-52 392.8 27.3 263 29-320 34-310 (327)
25 2zoo_A Probable nitrite reduct 100.0 5.1E-44 1.8E-48 382.8 27.7 265 29-320 24-300 (442)
26 2j5w_A Ceruloplasmin, ferroxid 100.0 5.4E-45 1.8E-49 425.3 21.6 402 50-563 616-1061(1065)
27 3kw8_A Laccase, putative coppe 100.0 1.7E-44 5.9E-49 361.4 21.8 240 28-318 2-266 (276)
28 3t9w_A Small laccase, multi-co 100.0 2.8E-44 9.4E-49 363.4 23.2 266 1-318 1-288 (299)
29 3tas_A Small laccase, multi-co 100.0 9.4E-44 3.2E-48 362.3 23.0 243 27-318 7-272 (313)
30 1mzy_A Copper-containing nitri 100.0 5.1E-43 1.8E-47 360.9 27.9 268 30-320 29-321 (333)
31 2bw4_A Copper-containing nitri 100.0 5.3E-42 1.8E-46 354.5 25.8 270 29-320 34-327 (340)
32 1oe1_A Dissimilatory copper-co 100.0 1.2E-41 4.2E-46 351.2 27.0 269 30-320 29-321 (336)
33 1sdd_B Coagulation factor V; c 100.0 4.3E-40 1.5E-44 367.8 25.9 250 29-297 2-312 (647)
34 1sdd_A Coagulation factor V; c 100.0 4.9E-41 1.7E-45 341.3 10.1 212 54-297 51-285 (306)
35 3cg8_A Laccase; oxidoreductase 100.0 4.2E-39 1.4E-43 331.4 23.9 236 30-318 45-307 (343)
36 2dv6_A Nitrite reductase; elec 100.0 3.7E-38 1.3E-42 338.0 30.2 259 31-319 161-435 (447)
37 2r7e_B Coagulation factor VIII 100.0 1.3E-39 4.3E-44 366.1 9.6 248 29-296 129-440 (770)
38 2r7e_A Coagulation factor VIII 100.0 2.6E-36 9E-41 338.7 5.7 217 59-298 447-697 (742)
39 3gdc_A Multicopper oxidase; be 100.0 3.9E-29 1.3E-33 251.6 16.3 235 196-560 54-288 (288)
40 3cg8_A Laccase; oxidoreductase 100.0 3.1E-28 1E-32 250.5 16.9 218 215-562 75-308 (343)
41 3g5w_A Multicopper oxidase typ 99.9 2.5E-27 8.4E-32 241.4 17.6 248 197-562 23-278 (318)
42 3kw8_A Laccase, putative coppe 99.9 5.6E-27 1.9E-31 234.3 18.0 220 215-562 34-267 (276)
43 3t9w_A Small laccase, multi-co 99.9 1.3E-26 4.5E-31 234.0 19.4 220 215-562 56-289 (299)
44 2zwn_A Two-domain type laccase 99.9 1E-26 3.5E-31 239.4 18.8 245 196-562 23-279 (339)
45 3tas_A Small laccase, multi-co 99.9 7.7E-26 2.6E-30 230.1 19.8 221 215-563 40-274 (313)
46 1sdd_A Coagulation factor V; c 99.9 1.5E-23 5E-28 212.7 4.7 239 199-561 52-301 (306)
47 1kbv_A ANIA, major outer membr 99.9 3.6E-21 1.2E-25 196.9 18.2 250 197-563 59-310 (327)
48 2bw4_A Copper-containing nitri 99.9 1.3E-20 4.6E-25 194.2 22.2 95 454-564 231-328 (340)
49 1sdd_B Coagulation factor V; c 99.9 2.1E-21 7.3E-26 216.7 16.0 250 215-560 67-327 (647)
50 1mzy_A Copper-containing nitri 99.8 6.3E-19 2.1E-23 181.1 23.1 96 454-564 225-322 (333)
51 2r7e_B Coagulation factor VIII 99.8 2.6E-21 8.8E-26 217.6 1.8 88 454-559 368-455 (770)
52 1oe1_A Dissimilatory copper-co 99.8 9.9E-18 3.4E-22 172.4 23.4 107 454-576 225-335 (336)
53 2zoo_A Probable nitrite reduct 99.8 3.3E-18 1.1E-22 182.7 18.7 250 197-563 49-300 (442)
54 2uxt_A Protein SUFI, SUFI; oxi 99.8 1.9E-17 6.4E-22 176.6 22.7 235 33-296 152-425 (451)
55 2xu9_A Laccase; oxidoreductase 99.8 1.6E-17 5.4E-22 176.9 21.4 229 32-296 145-424 (439)
56 1hfu_A Laccase 1; oxidoreducta 99.7 2.7E-15 9.2E-20 162.2 24.8 256 35-296 143-454 (503)
57 1v10_A Laccase; multicopper bl 99.7 2.2E-15 7.4E-20 163.5 24.1 235 52-296 191-475 (521)
58 3zx1_A Oxidoreductase, putativ 99.7 2E-15 6.7E-20 161.2 22.2 238 33-296 180-465 (481)
59 3t6v_A Laccase; beta barrel, o 99.6 1.6E-14 5.5E-19 155.1 23.2 239 51-296 167-455 (495)
60 1zpu_A Iron transport multicop 99.6 2.7E-14 9.2E-19 155.2 24.7 223 52-296 167-465 (534)
61 3pxl_A Laccase; 4-copper prote 99.6 3.3E-14 1.1E-18 152.8 23.2 239 51-296 165-455 (499)
62 3od3_A Blue copper oxidase CUE 99.6 2.9E-14 9.9E-19 152.2 21.7 250 35-296 152-474 (488)
63 1aoz_A Ascorbate oxidase; oxid 99.6 6.6E-14 2.3E-18 153.1 22.5 211 65-296 205-509 (552)
64 2g23_A PHS, phenoxazinone synt 99.6 1E-13 3.4E-18 151.9 22.9 231 51-297 253-576 (612)
65 2q9o_A Laccase-1; multicopper 99.6 2.8E-13 9.7E-18 148.0 25.4 240 52-296 195-505 (559)
66 3aw5_A Multicopper oxidase; be 99.6 6E-14 2.1E-18 149.3 19.1 212 50-296 167-433 (448)
67 3abg_A Bilirubin oxidase; clea 99.5 3.8E-13 1.3E-17 146.0 18.5 214 52-296 201-459 (534)
68 3cvb_A Plastocyanin; cupredoxi 99.5 8E-15 2.7E-19 124.0 3.7 90 59-152 14-105 (105)
69 2wsd_A Spore coat protein A; o 99.5 7.4E-14 2.5E-18 151.3 12.0 216 51-296 229-494 (513)
70 1iby_A Nitrosocyanin; RED copp 99.4 3.7E-13 1.3E-17 115.1 10.2 105 34-152 2-112 (112)
71 3sqr_A Laccase; multicopper ox 99.4 3.5E-11 1.2E-15 131.0 25.1 236 52-296 225-528 (580)
72 2cal_A Rusticyanin; iron respi 99.3 5.2E-12 1.8E-16 113.9 10.2 98 49-151 47-154 (154)
73 3gyr_A PHS, phenoxazinone synt 99.3 1.5E-10 5.1E-15 128.6 20.5 232 51-296 253-575 (612)
74 1fwx_A Nitrous oxide reductase 99.2 1.9E-11 6.6E-16 131.9 10.7 96 48-154 497-594 (595)
75 2aan_A Auracyanin A; cupredoxi 99.1 1.3E-10 4.4E-15 103.2 7.6 95 454-559 35-139 (139)
76 2ov0_A Amicyanin; beta-sandwic 99.1 3.8E-10 1.3E-14 95.0 9.7 79 58-151 27-105 (105)
77 3cvb_A Plastocyanin; cupredoxi 99.1 1.4E-10 4.7E-15 97.7 5.9 86 454-560 19-105 (105)
78 2gim_A Plastocyanin; beta shee 98.9 4E-09 1.4E-13 88.8 7.4 83 64-152 20-106 (106)
79 2aan_A Auracyanin A; cupredoxi 98.8 2.1E-08 7.2E-13 88.8 9.7 91 60-151 31-139 (139)
80 2gim_A Plastocyanin; beta shee 98.7 1.1E-08 3.8E-13 86.1 6.1 85 454-559 20-105 (106)
81 3c75_A Amicyanin; copper prote 98.7 2.2E-08 7.5E-13 87.7 7.7 79 58-151 54-132 (132)
82 4hci_A Cupredoxin 1; structura 98.7 4.6E-08 1.6E-12 81.3 8.5 79 58-151 22-100 (100)
83 1qhq_A Protein (auracyanin); e 98.7 1.1E-07 3.8E-12 84.2 10.7 89 63-152 32-140 (140)
84 1qhq_A Protein (auracyanin); e 98.6 8.4E-08 2.9E-12 85.0 9.5 99 454-559 33-139 (140)
85 2plt_A Plastocyanin; electron 98.5 9.1E-08 3.1E-12 79.1 5.5 77 64-151 18-98 (98)
86 1pcs_A Plastocyanin; electron 98.5 1.1E-07 3.8E-12 78.6 5.4 79 454-559 19-98 (98)
87 1pcs_A Plastocyanin; electron 98.5 3.4E-07 1.2E-11 75.6 7.5 80 64-151 19-98 (98)
88 2plt_A Plastocyanin; electron 98.4 2.9E-07 1E-11 76.0 6.7 81 454-559 18-98 (98)
89 1bxv_A Plastocyanin; copper pr 98.4 6.3E-07 2.1E-11 72.8 7.9 73 454-559 19-91 (91)
90 1bxv_A Plastocyanin; copper pr 98.4 5.5E-07 1.9E-11 73.2 7.5 73 64-151 19-91 (91)
91 1b3i_A PETE protein, protein ( 98.4 8.8E-07 3E-11 73.0 8.7 77 64-151 19-97 (97)
92 1kdj_A Plastocyanin; electron 98.4 7.5E-07 2.6E-11 74.1 7.7 77 64-151 17-102 (102)
93 3erx_A Pseudoazurin; copper pr 98.3 1.1E-06 3.9E-11 75.4 8.4 75 64-153 21-95 (123)
94 1b3i_A PETE protein, protein ( 98.3 3.2E-07 1.1E-11 75.6 4.7 78 455-559 20-97 (97)
95 3tu6_A Pseudoazurin (blue copp 98.3 1.1E-06 3.6E-11 76.0 7.1 76 64-154 23-98 (127)
96 1iby_A Nitrosocyanin; RED copp 98.3 2.4E-06 8.2E-11 72.4 9.1 75 454-560 38-112 (112)
97 1byp_A Protein (plastocyanin); 98.3 2.1E-06 7.2E-11 70.9 8.2 77 64-151 17-99 (99)
98 1plc_A Plastocyanin; electron 98.2 2.1E-06 7.3E-11 70.9 7.4 77 64-151 17-99 (99)
99 1byp_A Protein (plastocyanin); 98.2 2.2E-06 7.5E-11 70.8 6.3 83 454-559 17-99 (99)
100 4hci_A Cupredoxin 1; structura 98.2 5.8E-06 2E-10 68.4 8.9 72 455-559 29-100 (100)
101 1cuo_A Protein (azurin ISO-2); 98.2 6.4E-06 2.2E-10 71.4 9.0 89 64-152 18-129 (129)
102 3ef4_A Pseudoazurin, blue copp 98.1 4.1E-06 1.4E-10 71.8 7.1 75 64-153 22-96 (124)
103 1kdj_A Plastocyanin; electron 98.1 2.9E-06 9.9E-11 70.5 5.7 85 454-559 17-102 (102)
104 3ay2_A Lipid modified azurin p 98.1 7.1E-06 2.4E-10 74.1 7.7 93 60-152 54-167 (167)
105 1id2_A Amicyanin; beta barrel, 98.1 1.1E-05 3.9E-10 67.4 8.5 77 60-151 30-106 (106)
106 3sbq_A Nitrous-oxide reductase 98.0 1.7E-05 5.6E-10 84.1 10.4 92 51-153 545-638 (638)
107 1iuz_A Plastocyanin; electron 98.0 2.1E-05 7.1E-10 64.8 8.8 77 64-151 18-98 (98)
108 1paz_A Pseudoazurin precursor; 98.0 2E-05 6.9E-10 67.7 8.7 75 64-153 21-95 (123)
109 2ccw_A Azurin II, AZN-2; elect 97.9 4.6E-05 1.6E-09 66.0 10.2 88 64-151 18-128 (129)
110 1pmy_A Pseudoazurin; electron 97.9 2E-05 6.8E-10 67.7 7.5 76 64-154 21-96 (123)
111 2cal_A Rusticyanin; iron respi 97.9 2.3E-05 8E-10 70.2 8.2 89 454-559 61-154 (154)
112 2iaa_C Azurin; quinoprotein, t 97.9 5.8E-05 2E-09 65.1 10.0 93 60-152 13-128 (128)
113 1plc_A Plastocyanin; electron 97.9 2.1E-05 7.2E-10 64.8 6.5 83 454-559 17-99 (99)
114 1nwp_A Azurin; electron transp 97.8 7.3E-05 2.5E-09 64.5 9.7 92 60-151 14-128 (128)
115 1fwx_A Nitrous oxide reductase 97.8 5.2E-05 1.8E-09 81.9 10.2 79 453-561 512-593 (595)
116 2ux6_A Pseudoazurin; type-1 co 97.8 4.7E-05 1.6E-09 65.3 7.5 74 64-154 21-94 (122)
117 2ov0_A Amicyanin; beta-sandwic 97.6 0.00024 8.4E-09 59.1 8.7 73 454-559 33-105 (105)
118 3erx_A Pseudoazurin; copper pr 97.1 0.0011 3.9E-08 56.6 7.9 74 454-560 21-94 (123)
119 3tu6_A Pseudoazurin (blue copp 97.1 0.00099 3.4E-08 57.3 7.0 76 454-562 23-98 (127)
120 3ef4_A Pseudoazurin, blue copp 97.1 0.0014 5E-08 55.9 7.8 76 454-562 22-97 (124)
121 3fsa_A Azurin; copper, cupredo 97.0 0.0038 1.3E-07 53.0 9.9 88 61-151 15-125 (125)
122 1iuz_A Plastocyanin; electron 96.8 0.002 6.8E-08 52.7 5.8 81 454-559 18-98 (98)
123 2cua_A Protein (CUA); CUA cent 96.6 0.0068 2.3E-07 52.6 8.5 74 64-152 60-135 (135)
124 1id2_A Amicyanin; beta barrel, 96.6 0.0094 3.2E-07 49.4 8.7 73 454-559 34-106 (106)
125 1paz_A Pseudoazurin precursor; 96.5 0.0077 2.6E-07 51.4 8.3 37 521-561 59-95 (123)
126 3s8f_B Cytochrome C oxidase su 96.5 0.01 3.6E-07 53.3 9.3 80 58-152 87-168 (168)
127 3c75_A Amicyanin; copper prote 96.4 0.012 4.2E-07 50.8 8.7 73 454-559 60-132 (132)
128 1pmy_A Pseudoazurin; electron 96.3 0.0097 3.3E-07 50.8 7.6 38 520-561 58-95 (123)
129 3sbq_A Nitrous-oxide reductase 96.1 0.02 6.7E-07 60.9 9.9 79 454-560 558-637 (638)
130 1cuo_A Protein (azurin ISO-2); 95.9 0.079 2.7E-06 45.4 11.1 97 453-559 17-128 (129)
131 3ay2_A Lipid modified azurin p 95.8 0.032 1.1E-06 50.1 8.7 95 455-559 59-166 (167)
132 2cua_A Protein (CUA); CUA cent 95.4 0.077 2.6E-06 45.9 9.4 71 455-559 61-134 (135)
133 2ux6_A Pseudoazurin; type-1 co 95.1 0.058 2E-06 45.8 7.5 73 454-561 21-93 (122)
134 2ccw_A Azurin II, AZN-2; elect 94.7 0.22 7.5E-06 42.6 10.1 96 454-559 18-128 (129)
135 3fsa_A Azurin; copper, cupredo 94.6 0.27 9.2E-06 41.6 10.3 96 453-559 17-125 (125)
136 2iaa_C Azurin; quinoprotein, t 93.9 0.37 1.3E-05 41.1 9.8 98 454-559 17-127 (128)
137 1nwp_A Azurin; electron transp 93.6 0.43 1.5E-05 40.7 9.8 96 454-559 18-128 (128)
138 3s8f_B Cytochrome C oxidase su 92.9 0.53 1.8E-05 42.1 9.5 73 455-559 94-167 (168)
139 3isy_A Bsupi, intracellular pr 89.4 2.8 9.5E-05 35.1 9.8 74 223-297 16-102 (120)
140 3isy_A Bsupi, intracellular pr 77.8 15 0.00052 30.6 9.4 63 64-137 34-101 (120)
141 1cyx_A CYOA; electron transpor 70.0 11 0.00038 34.5 7.2 62 218-300 42-103 (205)
142 1cyx_A CYOA; electron transpor 69.9 10 0.00035 34.7 7.0 73 64-151 41-115 (205)
143 1v54_B Cytochrome C oxidase po 62.1 74 0.0025 29.6 11.5 74 64-153 140-216 (227)
144 3hb3_B Cytochrome C oxidase su 57.0 22 0.00074 34.7 7.0 78 452-561 187-265 (298)
145 2gsm_B Cytochrome C oxidase su 55.9 32 0.0011 32.9 7.9 75 64-153 171-247 (262)
146 3hb3_B Cytochrome C oxidase su 54.8 35 0.0012 33.2 8.0 76 64-154 189-266 (298)
147 3vpj_E TSE1-specific immunity 52.8 7 0.00024 32.3 2.3 53 14-83 22-75 (192)
148 2gsm_B Cytochrome C oxidase su 48.6 34 0.0012 32.7 6.8 62 218-300 172-233 (262)
149 2r39_A FIXG-related protein; s 48.1 46 0.0016 27.2 6.8 47 226-282 34-82 (118)
150 2f1e_A Protein APAG; APAG prot 47.8 21 0.00073 30.0 4.6 48 75-123 34-87 (127)
151 1nep_A EPV20, BNPC2, epididyma 47.3 33 0.0011 28.8 5.8 62 64-125 26-95 (130)
152 1xvs_A Protein APAG; MCSG APC2 45.9 21 0.00071 30.0 4.2 48 75-123 33-86 (126)
153 1fft_B Ubiquinol oxidase; elec 45.0 33 0.0011 33.7 6.2 73 64-151 151-225 (315)
154 1xq4_A Protein APAG; all beta 40.4 29 0.00099 29.6 4.3 48 75-123 38-91 (139)
155 1xwv_A DER F II; beta sheets, 40.1 48 0.0016 27.7 5.7 62 63-125 24-93 (129)
156 2p9r_A Alpha-2-M, alpha-2-macr 40.0 90 0.0031 24.5 7.2 71 220-296 12-84 (102)
157 1yew_A Particulate methane mon 40.0 34 0.0012 33.9 5.3 107 10-124 201-334 (382)
158 1tza_A APAG protein, SOR45; st 37.7 26 0.0009 29.7 3.6 48 75-123 33-86 (134)
159 3idu_A Uncharacterized protein 36.3 1.9E+02 0.0063 24.1 9.4 67 220-296 28-96 (127)
160 1v54_B Cytochrome C oxidase po 32.6 58 0.002 30.3 5.5 78 452-561 138-216 (227)
161 2xzz_A Protein-glutamine gamma 31.4 53 0.0018 26.3 4.4 53 73-131 23-79 (102)
162 1fft_B Ubiquinol oxidase; elec 29.6 52 0.0018 32.3 4.8 62 218-300 152-213 (315)
163 3q48_A Chaperone CUPB2; IG fol 28.7 74 0.0025 30.1 5.6 46 34-81 44-102 (257)
164 2wtp_A ORF131 protein, CZCE; m 27.1 20 0.00068 30.2 1.0 22 219-240 73-94 (131)
165 1x9u_A Umecyanin; cupredoxin, 26.9 62 0.0021 26.6 4.1 33 529-561 73-106 (116)
166 2c34_A ICP, inhibitor of cyste 25.6 2E+02 0.0067 23.4 7.0 20 63-82 14-33 (116)
167 1ws8_A Mavicyanin; oxidized fo 24.4 34 0.0012 27.8 2.1 69 67-155 29-107 (109)
168 2x3c_A Toxic extracellular end 23.6 37 0.0013 33.8 2.5 16 110-125 95-110 (343)
169 3kmh_A D-lyxose isomerase; cup 22.5 1.6E+02 0.0055 27.4 6.3 15 264-278 171-185 (246)
170 3kmh_A D-lyxose isomerase; cup 20.8 1.2E+02 0.0042 28.2 5.2 49 64-119 129-183 (246)
171 2x3c_A Toxic extracellular end 20.2 3.8E+02 0.013 26.3 9.1 71 225-296 38-127 (343)
172 2cio_B Inhibitor of cysteine p 20.1 3.4E+02 0.012 22.1 7.5 18 64-81 13-30 (121)
No 1
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=100.00 E-value=1.6e-98 Score=823.98 Aligned_cols=512 Identities=29% Similarity=0.563 Sum_probs=408.2
Q ss_pred ceeEEEEEEEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCC-CceeEEEeeeeeccCCCCCCCCCccc
Q 008090 31 GITRHYTFNIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVS-NNVTIHWHGVRQVTSGWADGPAYVTQ 109 (578)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DG~~~~~q 109 (578)
+++|+|+|+|++..++++|.++.+|+|||++|||+|++++||+|+|+|+|.|+ ++++|||||+++...+|+||+|+++|
T Consensus 1 ~~~~~y~~~v~~~~~~~dg~~~~~~~~Ng~~PGP~I~~~~GD~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~~vtq 80 (552)
T 1aoz_A 1 SQIRHYKWEVEYMFWAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQ 80 (552)
T ss_dssp CCEEEEEEEEEEEEECTTSSCEEEEEETTBSSCCCEEEETTCEEEEEEEECCSSCCBCEEEETCCCTTCGGGSCCBTTTB
T ss_pred CeEEEEEEEEEEEEEcCCCceEEEEEECCccCCCcEEEeCCCEEEEEEEeCCCCCCeeEEeCCCccCCCcccCCCccccc
Confidence 47899999999999999999999999999999999999999999999999997 99999999999999999999999999
Q ss_pred cccCCCCeEEEEEEEcCCCCceeeecCcchhc-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHHHHHHHHh
Q 008090 110 CPIQTGQSYTYNFTITGQRGTLLWHAHISWLR-STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEAIISQALQ 188 (578)
Q Consensus 110 ~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~~~~~~~~ 188 (578)
|+|+||++|+|+|++ +++||||||||...|+ +||+|+|||++++....++ .+|+|++|+++||++.+..+++.....
T Consensus 81 ~~I~PG~s~tY~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~ 158 (552)
T 1aoz_A 81 CAINPGETFFYNFTV-DNPGTFFYHGHLGMQRSAGLYGSLIVDPPQGKKEPF-HYDGEINLLLSDWWHQSIHKQEVGLSS 158 (552)
T ss_dssp CCBCTTCEEEEEEEC-CSCEEEEEEECSTTTGGGTCEEEEEEECCTTCCCSS-CCSEEEEEEEEEECSSCHHHHHHHTTS
T ss_pred CCcCCCCeEEEEEEC-CCCEEEEEEECchhHHhccCeeeEEEeCCcccCCCC-CCCccceEEeecccCCCHHHHHhhhhc
Confidence 999999999999998 8999999999998888 8999999999986544444 357899999999999988776543322
Q ss_pred cC-CCCCCCceEEEcCccCCCccc-------------CCC-----CeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceE
Q 008090 189 TG-AGPNVSDAYTINGLPGPLYNC-------------SSK-----DTYKLKVKPGKTYLLRLINAALNDELFFSIANHTL 249 (578)
Q Consensus 189 ~g-~~~~~~~~~liNG~~~~~~~~-------------~~~-----~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~ 249 (578)
.. .....++.++|||+.. ++| +.. ..+.++|++|++|||||||+|+.+.+.|+|+||+|
T Consensus 159 ~~~~~~~~~~~~liNG~~~--~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~ 236 (552)
T 1aoz_A 159 KPIRWIGEPQTILLNGRGQ--FDCSIAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQL 236 (552)
T ss_dssp SSCCCCCSCSEEEETTBCC--SSSBTTGGGCTTSCBCCCCSCSTTSCCCEEECTTCEEEEEEEECCSSCEEEEEETTCCE
T ss_pred ccccCCCCCCeEEECCccc--cCcccCcccccccccccccCCCCCCceEEEEcCCCEEEEEEEcccccceEEEEEcCcEE
Confidence 11 1112468999999974 333 221 12379999999999999999999999999999999
Q ss_pred EEEeecCCcccceEecEEEeCCCceEEEEEEcC-CCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCcccc
Q 008090 250 TVVEADAVYVKPFDTDKLLITPGQTANVLLRTK-PYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKL 328 (578)
Q Consensus 250 ~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~-~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~ 328 (578)
+||++||.+++|+.++++.|+|||||||+|+++ +++ |+|+|+++... +. .+.....|+|+|.++... ....
T Consensus 237 ~vi~~DG~~~~P~~~~~l~i~pgqR~dvlv~~~~~~~--g~y~i~~~~~~-~~--~~~~~~~ail~y~~~~~~---~~p~ 308 (552)
T 1aoz_A 237 LVVEADGNYVQPFYTSDIDIYSGESYSVLITTDQNPS--ENYWVSVGTRA-RH--PNTPPGLTLLNYLPNSVS---KLPT 308 (552)
T ss_dssp EEEEETTEEEEEEEESCEEECTTCEEEEEEECCSCTT--CCEEEEEEEES-SC--CCSCCEEEEEEETTSCTT---SCCS
T ss_pred EEEEECCcccCceEEeEEEEcCCcEEEEEEEcCCCCC--CCEEEEEEccc-CC--CCCccEEEEEEECCCCCC---CCCC
Confidence 999999999999999999999999999999994 444 99999999764 21 234578899999875430 0001
Q ss_pred CCCCCCCCCCCCcccccccccccccccCCCCCCCCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecC
Q 008090 329 QLYKPTLPSINDTSFAVNFTRKFRSLASVKYPANVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLP 408 (578)
Q Consensus 329 ~~~~p~~~~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p 408 (578)
... |..+.+++......+ .++.+.... +...+...++++.+.+..+. ....+.|++||++|..|
T Consensus 309 ~~~-p~~p~~~~~~~~~~~--~l~~l~~~~-~~~~~~~~~~~~~l~~~~~~------------~~~~~~w~iNg~s~~~p 372 (552)
T 1aoz_A 309 SPP-PQTPAWDDFDRSKNF--TYRITAAMG-SPKPPVKFNRRIFLLNTQNV------------INGYVKWAINDVSLALP 372 (552)
T ss_dssp SCC-CCCCCTTCHHHHHHH--HTTCCBCTT-CCCCCSSCSEEEEEEEEEEE------------ETTEEEEEETTEEECCC
T ss_pred CCC-CCCCccccccccccc--cccccccCC-CCCCCCCCcEEEEEEEeecc------------CCCeEEEEECCCccCCC
Confidence 111 334444443322211 233333222 33455667888877765432 12256799999999999
Q ss_pred cchhhhhhhcCCCCCcccCCCCCCCC-CCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCC---CCCCCcccc
Q 008090 409 STAILQSYFFGQNNGVYTTDFPVKPP-MPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILG---AESHPLHLH 484 (578)
Q Consensus 409 ~~~~l~~~~~~~~~g~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~---~~~HP~HlH 484 (578)
+.|+|.+.+.+++ |++..+++..++ ..|+... ...+...+.++.++.++.|++|||+|+|.+... .+.||||||
T Consensus 373 ~~P~L~~~~~~~~-g~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~g~~v~ivi~N~~~~~~~~~~~HP~HLH 450 (552)
T 1aoz_A 373 PTPYLGAMKYNLL-HAFDQNPPPEVFPEDYDIDT-PPTNEKTRIGNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLH 450 (552)
T ss_dssp SSCHHHHHHTTCT-TSSCCSCCCSCCCTTCCTTS-CCCCTTCEEECCCEEECTTCEEEEEEEECCCSSTTCCCCEEEEET
T ss_pred CCCHHHHHhhcCc-cccccCCCcccccccccccc-ccccccccccceEEEecCCCEEEEEEeCCcccccccCCCCCEEEc
Confidence 8899888887765 777666654332 1233332 112234566788999999999999999976432 467999999
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEecCCCC
Q 008090 485 GFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQNGAQP 564 (578)
Q Consensus 485 G~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~ 564 (578)
||+||||++|.|.|++ .....+|+.+|.|||||.|+++||++|||+|||||.|+|||||++|++.|||++|.|.+
T Consensus 451 Gh~F~Vl~~g~G~~~~-~~~~~~n~~~p~~RDTv~vpp~g~v~Irf~aDNPG~W~~HCHi~~H~~~GM~~~~~~~~---- 525 (552)
T 1aoz_A 451 GHDFWVLGYGDGKFSA-EEESSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGV---- 525 (552)
T ss_dssp TCCEEEEEEEESSCCG-GGGGGSCCSSCCEESEEEECTTEEEEEEEECCSCEEEEEEESSHHHHHTTCEEEEEECG----
T ss_pred CCceEEEecccCccCc-ccccccccCCCCccCeEEeCCCceEEEEEEcCCCeEEEEEeeehhHhhCCCeEEEEeCc----
Confidence 9999999999888887 34557889999999999999999999999999999999999999999999999998864
Q ss_pred CCCCCCCCCCCCCC
Q 008090 565 NQTLPPPPSDLPKC 578 (578)
Q Consensus 565 ~~~~~~~p~~~~~c 578 (578)
+.++++|+++|+|
T Consensus 526 -~~~~~~P~~~~~C 538 (552)
T 1aoz_A 526 -EKVGRIPTKALAC 538 (552)
T ss_dssp -GGCCCCCHHHHSS
T ss_pred -hhhccCCcchhhh
Confidence 2566789999999
No 2
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=100.00 E-value=2.3e-93 Score=776.62 Aligned_cols=464 Identities=31% Similarity=0.513 Sum_probs=372.3
Q ss_pred cceeEEEEEEEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCC-CceeEEEeeeeeccCCCCCCCCCcc
Q 008090 30 AGITRHYTFNIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVS-NNVTIHWHGVRQVTSGWADGPAYVT 108 (578)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DG~~~~~ 108 (578)
.|++|+|+|+|++..++++|+++.+|+|||++|||+|++++||+|+|+|+|+|+ ++|+|||||+++..++|+||+|++|
T Consensus 64 ~~~~~~~~l~v~~~~~~pdG~~~~~~~~NG~~PGP~I~~~~GD~v~V~v~N~l~~~~tsIHwHGl~~~~t~~~DGvp~vT 143 (580)
T 3sqr_A 64 TGVTREYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVT 143 (580)
T ss_dssp CCCEEEEEEEEEEEEECSSSBCEEEEEETTBSSCCCEEEETTCEEEEEEEECCSSCCBCEEETTCCCTTCGGGSCCBTTT
T ss_pred CceEEEEEEEEEEEEecCCCeEEEEEEECCccCCceEEEeCCCEEEEEEEECCCCCcceEEecccccCCCccccCCCccc
Confidence 477899999999999999999999999999999999999999999999999997 8999999999999989999999999
Q ss_pred ccccCCCCeEEEEEEEcCCCCceeeecCcchhc-ccceeeEEEeCCCCCCCCCCCCCCcE-eEEeeecccCChHHHHHHH
Q 008090 109 QCPIQTGQSYTYNFTITGQRGTLLWHAHISWLR-STLYGPIIILPKRNESYPFQKPHKEI-PILFGEWFNVDPEAIISQA 186 (578)
Q Consensus 109 q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~p~~~~~~e~-~l~~~d~~~~~~~~~~~~~ 186 (578)
||+|+||++|+|+|++ .++||||||||...|+ +||+|+|||+++.+. .+|.|. +|+++||++....+++...
T Consensus 144 q~pI~PG~sftY~f~~-~q~GT~WYHsH~~~q~~~GL~G~lIV~~p~~~-----~yD~d~~~l~l~Dw~~~~~~~~~~~~ 217 (580)
T 3sqr_A 144 QCPIAPGDTLTYKFQV-TQYGTTWYHSHFSLQYGDGLFGPLIINGPATA-----DYDEDVGVIFLQDWAHESVFEIWDTA 217 (580)
T ss_dssp BCCBCTTCEEEEEEEC-CCCEEEEEEECSTTGGGGTCEEEEEEECCCSS-----CCSEEEEEEEEEEECSSCHHHHHHHH
T ss_pred cCCCCCCCeEEEEEEC-CCCcceEEeecccccccCcCEEEEEeeCcccC-----CCCccceEEEEEEEecCCHHHHHHHH
Confidence 9999999999999998 6899999999998888 799999999987642 358887 9999999999988876655
Q ss_pred HhcCCCCCCCceEEEcCccCCCcccCC---------CCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCC
Q 008090 187 LQTGAGPNVSDAYTINGLPGPLYNCSS---------KDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAV 257 (578)
Q Consensus 187 ~~~g~~~~~~~~~liNG~~~~~~~~~~---------~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~ 257 (578)
... .+..+++++|||+.. ++|+. ...+.++|++|++|||||||+|....+.|+|+||+|+|||+||.
T Consensus 218 ~~~--~~~~~d~~liNG~~~--~~c~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~i~gh~~~VIa~DG~ 293 (580)
T 3sqr_A 218 RLG--APPALENTLMNGTNT--FDCSASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLV 293 (580)
T ss_dssp TTS--CCCCBSEEEETTBCC--CCCTTCCCTTBCCCCCCCEEECCTTCEEEEEEEECCSSCCEEEEETTCCEEEEEETTE
T ss_pred hcc--CCCCCceEEECCccc--CCCccccccccccCCCceeEEEcCCCEEEEEEEeccCCceeeEEeCCceEEEEEeCCc
Confidence 432 245679999999964 44542 24689999999999999999999999999999999999999999
Q ss_pred cccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCC
Q 008090 258 YVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPS 337 (578)
Q Consensus 258 ~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~ 337 (578)
+++|+.+++|.|+|||||||+|+++++. |+|+|++.+..++..........|||+|.++.. .. |..+.
T Consensus 294 ~v~P~~~~~l~i~pGqRydVlv~a~~~~--g~Y~i~a~~~~~~~~~~~~~~~~aiL~Y~~~~~-----~~-----P~~~~ 361 (580)
T 3sqr_A 294 PIVPYTTDTLLIGIGQRYDVIVEANAAA--DNYWIRGNWGTTCSTNNEAANATGILRYDSSSI-----AN-----PTSVG 361 (580)
T ss_dssp EEEEEEESSEEECTTCEEEEEEECCSCS--SEEEEECCCCTTTSCBTTGGGCEEEEESSTTCC-----CC-----CCCCC
T ss_pred cCCceEeeEEEEccceEEEEEEEeCCCC--CeEEEEEecccccCccCCCCceEEEEEECCCCC-----CC-----CCCCC
Confidence 9999999999999999999999999876 999999987655532223447899999976432 11 11111
Q ss_pred CCCccc-ccccccccccccCCCCCCCCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeec-Ccchhhhh
Q 008090 338 INDTSF-AVNFTRKFRSLASVKYPANVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVL-PSTAILQS 415 (578)
Q Consensus 338 ~~~~~~-~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~-p~~~~l~~ 415 (578)
++.... .......|.++ .+..++...+.++.+.++ .+..+.|++||++|.. +..|.|.+
T Consensus 362 ~~~~~~~~~~~~~~L~P~----~~~~~~~~~~~~~~l~~~---------------~~~~~~w~iN~~s~~~~~~~P~L~~ 422 (580)
T 3sqr_A 362 TTPRGTCEDEPVASLVPH----LALDVGGYSLVDEQVSSA---------------FTNYFTWTINSSSLLLDWSSPTTLK 422 (580)
T ss_dssp CCCCCCSCCSCGGGCCBS----SCCBCCSEEEEEEEEEEE---------------ESSSEEEEETTBCCCCCTTSCHHHH
T ss_pred CCccchhhcccccccccC----CCCCCCCccceEEEEEec---------------cCCceeEEECCEecccCCCCCchhh
Confidence 111110 00001123222 122333334444444432 2246789999999975 46676655
Q ss_pred hhcCCCCCcccCCCCCCCCCCCCCCCCCCCCCccCCCeeeEee----cCCCEEEEEEeeCCCCCCCCCCccccCCceEEE
Q 008090 416 YFFGQNNGVYTTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLL----PFNTSVELVMQDTSILGAESHPLHLHGFNFFVV 491 (578)
Q Consensus 416 ~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv 491 (578)
.+. |. .+|+ ....++.+ +.|++|||+|+|.+. ..+.||||||||+|+||
T Consensus 423 ~~~----g~--~~~~--------------------~~~~~~~~~~~~~~~~~VeiVi~n~~~-~~~~HP~HLHGh~F~vv 475 (580)
T 3sqr_A 423 IFN----NE--TIFP--------------------TEYNVVALEQTNANEEWVVYVIEDLTG-FGIWHPIHLHGHDFFIV 475 (580)
T ss_dssp HHT----TC--CCCC--------------------GGGCEEEECC----CCEEEEEEEECSS-SCCCEEEEESSCCEEEE
T ss_pred hhc----CC--ccCC--------------------CCcceeecccccCCCcEEEEEEeCCCc-cccceeeEecCceEEEE
Confidence 442 21 2221 11234444 469999999999752 24799999999999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEecC
Q 008090 492 GLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQNG 561 (578)
Q Consensus 492 ~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~ 561 (578)
+.|.|.|++......+|+.+|++||||.|+++||++|||++||||.|+|||||++|++.||+++|.+.+.
T Consensus 476 ~~g~G~f~~~~~~~~~nl~nP~~rDTv~v~~~g~~~irf~adNPG~W~~HCHi~~H~~~Gm~~~~~e~~~ 545 (580)
T 3sqr_A 476 AQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSWLLHCHIAWHASEGLAMQFVESQS 545 (580)
T ss_dssp EEESSCCCTTTSGGGCCCBSCCEESEEEECTTSEEEEEEESCSCEEEEEEECSHHHHHTTCEEEEEESGG
T ss_pred ecCCCccCccccccccccCCCceeeEEEeCCCceEEEEEEcCCCeeeEEEECcHHHhhCCCcEEEEECHH
Confidence 9999999987666789999999999999999999999999999999999999999999999999987643
No 3
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=100.00 E-value=4.2e-92 Score=766.76 Aligned_cols=478 Identities=26% Similarity=0.467 Sum_probs=362.7
Q ss_pred ccccceeEEEEEEEEEEeeecCce-eeeEEEECCCCCCcEEEEecCCEEEEEEEeCCC-----CceeEEEeeeeeccCCC
Q 008090 27 EFAAGITRHYTFNIKYHNVTRLCH-TRNIISVNGQFPGPSLVAREGDRVLIKVTNHVS-----NNVTIHWHGVRQVTSGW 100 (578)
Q Consensus 27 ~~~~~~~~~~~l~~~~~~~~~~g~-~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~-----~~~siH~HG~~~~~~~~ 100 (578)
..+++...+|+|+|++..++++|+ .+.+|+|||++|||+|++++||+|+|+|+|.|+ ++|+|||||+++...+|
T Consensus 17 ~~~~~~~~~~~l~i~~~~~~~dg~~~~~~~~~NG~~PGP~i~~~~Gd~v~v~v~N~l~~~~~~~~tsiHwHGl~~~~~~~ 96 (521)
T 1v10_A 17 SLSLAATVALDLHILNANLDPDGTGARSAVTAEGTTIAPLITGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTE 96 (521)
T ss_dssp -----CCSEEEEEEEEEEECTTSSCCEEEEEESSSSSCCCEEEETTCEEEEEEEECCCCTTSCCCBCEEEETCCCTTCGG
T ss_pred hhhcccCceEEEEEEEEEEcCCCcceEEEEEECCccCCCcEEEeCCCEEEEEEEECCCCccCCCCceEecCCeeccCCCc
Confidence 334667788999999999999999 999999999999999999999999999999998 99999999999988899
Q ss_pred CCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCcchhc-ccceeeEEEeCCCCC-CCCCCCCCCcEeEEeeecccCC
Q 008090 101 ADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLR-STLYGPIIILPKRNE-SYPFQKPHKEIPILFGEWFNVD 178 (578)
Q Consensus 101 ~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~-~~p~~~~~~e~~l~~~d~~~~~ 178 (578)
+||+|+++||+|+||++++|+|++++++||||||||.+.|. +||+|+|||+++.+. +.++...++|++|+++||+++.
T Consensus 97 ~DGv~~vtq~~I~PG~s~~Y~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~~e~~l~l~D~~~~~ 176 (521)
T 1v10_A 97 MDGPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPNDPHLSLYDVDDASTVITIADWYHSL 176 (521)
T ss_dssp GSCCBTTTBCCBCTTEEEEEEEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTTCTTGGGCSBCSGGGEEEEEEECSSC
T ss_pred cCCCcceeeCCcCCCCeEEEEEecCCCCccEEEEeccCCchhcCceEEEEEcCCcccccccCCCCCceeEEEEcccccCC
Confidence 99999999999999999999999778899999999999888 899999999987532 1222222469999999999987
Q ss_pred hHHHHHHHHhcCCCCCCCceEEEcCccCCCcccC--CCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecC
Q 008090 179 PEAIISQALQTGAGPNVSDAYTINGLPGPLYNCS--SKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADA 256 (578)
Q Consensus 179 ~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~--~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG 256 (578)
..++... .+.....+++++|||+.. +.|. ....+.++|++|++|||||||+|+.+.+.|+|+||+|+||++||
T Consensus 177 ~~~~~~~---~~~~~~~~d~~liNG~~~--~~~~~~~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~~vi~~DG 251 (521)
T 1v10_A 177 STVLFPN---PNKAPPAPDTTLINGLGR--NSANPSAGQLAVVSVQSGKRYRFRIVSTSCFPNYAFSIDGHRMTVIEVDG 251 (521)
T ss_dssp CC----------CCCSCCSEEEETTBCC--CSSCGGGSCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEEEEETT
T ss_pred HHHHhhc---cCCCCCCCCEEEECCccc--CCCCCCCCCceEEEECCCCEEEEEEEecCCcccEEEEECCCeEEEEecCC
Confidence 7665321 112233579999999975 3443 23457899999999999999999999999999999999999999
Q ss_pred CcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCC
Q 008090 257 VYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLP 336 (578)
Q Consensus 257 ~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~ 336 (578)
.+++|+.++++.|+|||||||+|++++++ |+|+|+++....+. .+......++|+|.++... . |..+
T Consensus 252 ~~~~p~~~~~l~l~pgqR~dvlv~~~~~~--g~y~i~~~~~~~~~-~~~~~~~~ail~y~~~~~~-----~-----p~~~ 318 (521)
T 1v10_A 252 VSHQPLTVDSLTIFAGQRYSVVVEANQAV--GNYWIRANPSNGRN-GFTGGINSAIFRYQGAAVA-----E-----PTTS 318 (521)
T ss_dssp EEEEEEEESBEEECTTCEEEEEEECCSCS--SEEEEEEEESSSSC-SCGGGTTEEEEEETTCCSC-----C-----CCCC
T ss_pred ccccceeeeeEEEcccceEEEEEEcCCCC--Cceeeeeccccccc-cCCCCceeEEEEECCCCCC-----C-----CCCC
Confidence 99999999999999999999999998865 99999998754322 1122234699999875430 0 1100
Q ss_pred CCCCcccccccccccccccCCCCCC-CCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhh
Q 008090 337 SINDTSFAVNFTRKFRSLASVKYPA-NVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQS 415 (578)
Q Consensus 337 ~~~~~~~~~~~~~~l~~l~~~~~p~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~ 415 (578)
.. +..... ...+.++.....|. ..+...+.++.++... .+..+.|++||++|..++.|+|.+
T Consensus 319 ~~-~~~~~~--~~~l~p~~~~~~p~~~~~~~~~~~~~l~~~~--------------~~~~~~~~iNg~~~~~~~~P~l~~ 381 (521)
T 1v10_A 319 QN-SGTALN--EANLIPLINPGAPGNPVPGGADINLNLRIGR--------------NATTADFTINGAPFIPPTVPVLLQ 381 (521)
T ss_dssp CC-CSCBCC--GGGCCBSSCCCCSSCSSTTCSSEEEECCEEC--------------CSSSSCCEESSCCCCCCSSCHHHH
T ss_pred CC-cccccc--hhhcccCCcccCCCcccCCcceEEEEEEEec--------------CCceeEEEECCCcccCCCCchhhh
Confidence 00 000000 11233332222221 1122334444332211 222346899999999888776655
Q ss_pred hhcCCCCCccc-CCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEec
Q 008090 416 YFFGQNNGVYT-TDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLG 494 (578)
Q Consensus 416 ~~~~~~~g~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g 494 (578)
.+. |... .+ .+.++.++.++.|++|||+++| . +.||||||||+||||+++
T Consensus 382 ~~~----g~~~~~~--------------------~~~~~~~~~v~~g~~vei~l~N-~----~~HP~HLHGh~F~Vl~~~ 432 (521)
T 1v10_A 382 ILS----GVTNPND--------------------LLPGGAVISLPANQVIEISIPG-G----GNHPFHLHGHNFDVVRTP 432 (521)
T ss_dssp HHH----TCCCGGG--------------------SSSTTTEEEECTTCEEEEEEEC-C----BSCEEEESSCCEEEEECT
T ss_pred hhc----CCccccc--------------------CCCCceEEEecCCCEEEEEEcC-C----CCCCEEEccceEEEEecC
Confidence 432 2110 11 2235678899999999999999 2 799999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCcceeeee-CCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEecCCCCCCCCCCCC-
Q 008090 495 FGNYDPDKDLMNFNLVDPMERNTIGV-PAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQNGAQPNQTLPPPP- 572 (578)
Q Consensus 495 ~g~~~~~~~~~~~~~~~p~~rDTv~v-pp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p- 572 (578)
.+. .+++.+|.|||||.| ++++|++|||++||||.|+|||||++|++.|||++|.|.+.+. .++.++|
T Consensus 433 ~~~--------~~n~~~p~~rDTV~V~p~gg~v~Irf~aDNPG~W~~HCHi~~H~~~GM~~~~~v~~~~~--~~~~~~p~ 502 (521)
T 1v10_A 433 GSS--------VYNYVNPVRRDVVSIGGGGDNVTFRFVTDNPGPWFLHCHIDWHLEAGLAVVFAEDIPNI--PIANAISP 502 (521)
T ss_dssp TCS--------CCCCSSCCEESEEECCBSSCEEEEEEECCSCEEEEEEESCHHHHTTTCEEEEEESGGGH--HHHSCCCH
T ss_pred CCC--------ccccCCCCeeeeEEeCCCCcEEEEEEEeCCCeeEEEeeChHHHHhCCCeEEEEECCcch--hhccCCCh
Confidence 542 357889999999999 8999999999999999999999999999999999999875432 2334344
Q ss_pred CCCCCC
Q 008090 573 SDLPKC 578 (578)
Q Consensus 573 ~~~~~c 578 (578)
...+.|
T Consensus 503 ~~~~~C 508 (521)
T 1v10_A 503 AWDDLC 508 (521)
T ss_dssp HHHTHH
T ss_pred HHhhhc
Confidence 446766
No 4
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-91 Score=762.74 Aligned_cols=461 Identities=26% Similarity=0.423 Sum_probs=363.6
Q ss_pred eeEEEEEEEEEEeeecCc-eeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCC-CceeEEEeeeeeccCCCCCCCCCccc
Q 008090 32 ITRHYTFNIKYHNVTRLC-HTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVS-NNVTIHWHGVRQVTSGWADGPAYVTQ 109 (578)
Q Consensus 32 ~~~~~~l~~~~~~~~~~g-~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DG~~~~~q 109 (578)
++|+|+|+|++..+++|| .++.+|+|||++|||+|++++||+|+|+|+|.|+ ++|+|||||+++...+|+||+|+++|
T Consensus 1 ~~~~~~~~v~~~~~~pdG~~~~~~~~~Ng~~PGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~vtq 80 (534)
T 1zpu_A 1 ETHTFNWTTGWDYRNVDGLKSRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQ 80 (534)
T ss_dssp CEEEEEEEEEEEEECSSSSCCEEEEEETTBSSCCCEEEETTCEEEEEEECCCSSCCBCCEEETCCCTTCGGGSCCBTTTB
T ss_pred CEEEEEEEEEEEEecCCCCceEEEEEECCccCCccEEEECCCEEEEEEEeCCCCCCeeEEcCCcccCCCCcccCCCcccc
Confidence 478999999999999999 8999999999999999999999999999999998 99999999999998889999999999
Q ss_pred cccCCCCeEEEEEEEcCCCCceeeecCcchhc-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHHHHHHHHh
Q 008090 110 CPIQTGQSYTYNFTITGQRGTLLWHAHISWLR-STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEAIISQALQ 188 (578)
Q Consensus 110 ~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~~~~~~~~ 188 (578)
|+|+||++|+|+|++++++||||||||.+.|. +||+|+|||+++.. |+ .+|+|++|+++||+++...++......
T Consensus 81 ~pI~PG~~~~Y~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~~---p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~ 156 (534)
T 1zpu_A 81 CPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIKDDSF---PY-DYDEELSLSLSEWYHDLVTDLTKSFMS 156 (534)
T ss_dssp CCBCTTCEEEEEEECSSCCEEEEEECCSSSGGGGTCEEEEEEECTTC---CS-CCSEEEEEEEEEECSSCHHHHHHHHSS
T ss_pred CCcCCCCeEEEEEEeCccceeEEEEEcCcccccCcceeeEEeCCCCC---CC-CCcceEEEEeeccccCCHHHHHHHHhc
Confidence 99999999999999866999999999999888 89999999999853 22 468999999999999998877655432
Q ss_pred c---CCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEec
Q 008090 189 T---GAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTD 265 (578)
Q Consensus 189 ~---g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d 265 (578)
. .+....++.+||||+.. +.++|++||+|||||||+|+.+.+.|+|+||+|+||++||.+++|+.++
T Consensus 157 ~~~~~g~~~~~d~~liNG~~~----------~~~~v~~g~~~RlRliNa~~~~~~~~~i~gh~~~vi~~DG~~~~P~~~~ 226 (534)
T 1zpu_A 157 VYNPTGAEPIPQNLIVNNTMN----------LTWEVQPDTTYLLRIVNVGGFVSQYFWIEDHEMTVVEIDGITTEKNVTD 226 (534)
T ss_dssp TTCTTCCCCCCSEEEETTBSS----------CEEECCSSCEEEEEEEECCSSCCEEEEETTBCEEEEEETTEEEEEEEES
T ss_pred cccCCCCCCCCceEEECCCCc----------eEEEEECCCEEEEEEEeccCCceEEEEEcCCeeEEEeccCcCccccEec
Confidence 1 12234679999999964 6899999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCC---CCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCC-CCCc
Q 008090 266 KLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGM---GTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPS-INDT 341 (578)
Q Consensus 266 ~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~---~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~-~~~~ 341 (578)
+|.|+|||||||+|++++.+ +++|+|++.....+. .........++|+|.++.. .+.+... +.++. .++
T Consensus 227 ~l~l~~gqR~dvlv~~~~~~-~~~y~i~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~----~p~~~~~-~~~~~~~~~- 299 (534)
T 1zpu_A 227 MLYITVAQRYTVLVHTKNDT-DKNFAIMQKFDDTMLDVIPSDLQLNATSYMVYNKTAA----LPTQNYV-DSIDNFLDD- 299 (534)
T ss_dssp CEEECTTCEEEEEEECCSCS-SCCEEEEEEECGGGSSSCCTTCCCEEEEEEESCTTSC----BCCCCCC-SCSSCSCCG-
T ss_pred eEEECccceEEEEEEcCCCC-CCcEEEEEeccccccccCCCCCCcceEEEEEeCCCCC----CCCCCcc-ccccccccc-
Confidence 99999999999999998642 279999987643321 1123456789999987532 0001101 11111 111
Q ss_pred ccccccccccccccCCCCCCCCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhhhcCCC
Q 008090 342 SFAVNFTRKFRSLASVKYPANVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYFFGQN 421 (578)
Q Consensus 342 ~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~~~ 421 (578)
..++++.. ..++...++++.+.+.+... .++ ...|++||++|..|+.|.|.+.+..
T Consensus 300 -------~~l~p~~~----~~~~~~~~~~~~l~~~~~~~----------~~~-~~~~~iNg~s~~~~~~P~L~~~~~~-- 355 (534)
T 1zpu_A 300 -------FYLQPYEK----EAIYGEPDHVITVDVVMDNL----------KNG-VNYAFFNNITYTAPKVPTLMTVLSS-- 355 (534)
T ss_dssp -------GGCCBSSC----CCCCCSCSEEEEEEEEEEEC----------TTS-CEEEEETTBCCCCCSSCHHHHHTTS--
T ss_pred -------ccceeCCC----CCCCCCCCeEEEEEEEeecc----------CCc-eeEEEECCCcccCCCCCceeeeccc--
Confidence 11222211 12234557777776654321 122 3357899999999988766543321
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCC-----
Q 008090 422 NGVYTTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFG----- 496 (578)
Q Consensus 422 ~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g----- 496 (578)
|.+..+ +.. ...++.++.++.|++|+|+|+|.+ .+.||||||||+||||+++.+
T Consensus 356 -~~~~~~-----~~~------------~~~~~~~~~~~~g~~v~ivi~N~~---~~~HP~HLHGh~F~Vl~~~~~~~~~~ 414 (534)
T 1zpu_A 356 -GDQANN-----SEI------------YGSNTHTFILEKDEIVEIVLNNQD---TGTHPFHLHGHAFQTIQRDRTYDDAL 414 (534)
T ss_dssp -GGGTTC-----GGG------------GCSSSCEEEECTTCEEEEEEEECS---SSCEEEEETTCCEEEEEECCCCCGGG
T ss_pred -CcccCC-----Ccc------------cCCCceEEEeCCCCEEEEEEeCCC---CCCCCeEecCCceEEEeecCCccccc
Confidence 221110 111 223467889999999999999964 489999999999999999864
Q ss_pred -----CCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEec
Q 008090 497 -----NYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQN 560 (578)
Q Consensus 497 -----~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~ 560 (578)
.|++.. .. ....+|.|||||.|++++|++|||++||||.|+|||||++|++.|||++|.|.+
T Consensus 415 ~G~p~~~~~~~-~~-~~~~~p~~RDTv~V~pgg~v~IrF~aDNPG~W~~HCHi~~H~~~GM~~~~~~~~ 481 (534)
T 1zpu_A 415 GEVPHSFDPDN-HP-AFPEYPMRRDTLYVRPQSNFVIRFKADNPGVWFFHCHIEWHLLQGLGLVLVEDP 481 (534)
T ss_dssp TCCCCCCBTTB-CC-CCCSSCEEESEEEECTTCEEEEEEECCSCEEEEEEECCHHHHHTTCEEEEEECH
T ss_pred cCcccccCccc-cc-cccCCCCeeeEEEeCCCCEEEEEEEeCCCeeEEEEeCchhHhhcCCeEEEEECc
Confidence 344321 11 225689999999999999999999999999999999999999999999998864
No 5
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=100.00 E-value=4.9e-91 Score=750.17 Aligned_cols=456 Identities=29% Similarity=0.518 Sum_probs=356.2
Q ss_pred EEEEEEEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCC-----ceeEEEeeeeeccCCCCCCCCCcc
Q 008090 34 RHYTFNIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSN-----NVTIHWHGVRQVTSGWADGPAYVT 108 (578)
Q Consensus 34 ~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~-----~~siH~HG~~~~~~~~~DG~~~~~ 108 (578)
..|+|+|++..+++||+++.+|+|||++|||+|++++||+|+|+|+|.|+. +|+|||||+++...+|+||++++|
T Consensus 4 ~~~~l~v~~~~~~pdG~~~~~~~~NG~~PGP~I~~~~GD~v~V~v~N~l~~~~~~~~tsiHwHGl~~~~~~~~DGv~~vt 83 (499)
T 3pxl_A 4 PVADLTITDAAVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPAFIN 83 (499)
T ss_dssp SEEEEEEEEEEECTTSCCEEEEEETTBSSCCCEEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTTT
T ss_pred ceEEEEEEEEEEcCCCcEEEEEEECCcccCCeEEEeCCCEEEEEEEECCCCccCCCceEEEeCCcccCCCccccCCCccc
Confidence 569999999999999999999999999999999999999999999999974 799999999999889999999999
Q ss_pred ccccCCCCeEEEEEEEcCCCCceeeecCcchhc-ccceeeEEEeCCCCC-CCCCCCCCCcEeEEeeecccCChHHHHHHH
Q 008090 109 QCPIQTGQSYTYNFTITGQRGTLLWHAHISWLR-STLYGPIIILPKRNE-SYPFQKPHKEIPILFGEWFNVDPEAIISQA 186 (578)
Q Consensus 109 q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~-~~p~~~~~~e~~l~~~d~~~~~~~~~~~~~ 186 (578)
||+|+||++|+|+|++++++||||||||...|+ +||+|+|||+++.+. ..++...++|++|+++||++.....
T Consensus 84 q~pI~PG~s~tY~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~~~~~~~~~~d~~~~~l~l~Dw~~~~~~~----- 158 (499)
T 3pxl_A 84 QCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVDNDDTVITLADWYHTAAKL----- 158 (499)
T ss_dssp BCCBCTTCEEEEEEECSSCCEEEEEEECSTTGGGGTCEEEEEEECTTCTTGGGCSBCSGGGEEEEEEECSSCTTT-----
T ss_pred cCCCCCCCeEEEEEEcCCCCceeeeeccchhHHhccceeEEEEcCCcccccccCCCCCceEEEEEEcccCCcccc-----
Confidence 999999999999999878899999999999888 899999999977542 1122223567899999999876542
Q ss_pred HhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecE
Q 008090 187 LQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDK 266 (578)
Q Consensus 187 ~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~ 266 (578)
.+..+..+++++|||+.. +..+.....+.++|++|++|||||||+|..+.+.|+|+||+|+|||+||.+++|+.+++
T Consensus 159 --~~~~p~~~d~~liNG~~~-~~~~~~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~ 235 (499)
T 3pxl_A 159 --GPRFPGGADATLINGKGR-APSDSVAELSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDS 235 (499)
T ss_dssp --SCSSCSSCSEEEETTBCC-CTTCTTCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTBCEEEEEETTEEEEEEEESB
T ss_pred --ccCCCCCCcEEEECCCCc-CCCCCCCCcceEEEcCCCEEEEEEEecCCCeeEEEEECCCeEEEEEECCcccCceEeee
Confidence 223344679999999953 33334446689999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCcccccc
Q 008090 267 LLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDTSFAVN 346 (578)
Q Consensus 267 v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 346 (578)
|.|+|||||||+|+++++. |+|+|++.+..++. .+......|+|+|.++.. ..+.. +..+.... .
T Consensus 236 l~i~pGqR~dvlv~~~~~~--g~y~i~a~~~~~~~-~~~~~~~~ail~Y~~~~~-----~~p~~--~~~~~~~~-----~ 300 (499)
T 3pxl_A 236 IQIFAAQRYSFVLDANQAV--DNYWIRANPNFGNV-GFDGGINSAILRYDGAPA-----VEPTT--NQTTSVKP-----L 300 (499)
T ss_dssp EEECTTCEEEEEEECCSCS--SEEEEEEEESSSSC-SCGGGTTEEEEEETTSCS-----SCCCC--CCCCCSSB-----C
T ss_pred EEECCCcEEEEEEECCCCC--ceEEEEEecccCcc-ccCCCceEEEEEeCCCCC-----CCCCC--CCCCCCcc-----c
Confidence 9999999999999999876 89999998754332 122334579999987532 00100 00000000 0
Q ss_pred cccccccccCCCCCC-CCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhhhcCCCCCcc
Q 008090 347 FTRKFRSLASVKYPA-NVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYFFGQNNGVY 425 (578)
Q Consensus 347 ~~~~l~~l~~~~~p~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~ 425 (578)
....|+++.....|. ..+..+++++.+++.+ .+. .|++||++|..|+.|+|.+.+. |..
T Consensus 301 ~~~~L~p~~~~~~p~~~~~~~~d~~~~l~~~~--------------~~~--~w~iNg~s~~~~~~P~L~~~~~----g~~ 360 (499)
T 3pxl_A 301 NEVDLHPLVSTPVPGAPSSGGVDKAINMAFNF--------------NGS--NFFINGASFVPPTVPVLLQILS----GAQ 360 (499)
T ss_dssp CGGGCCBSSCCCCSSCSSTTCSSEEEECCEEE--------------CSS--CEEETTBCCCCCSSCHHHHHHT----TCC
T ss_pred ccccccccccccCCCcccCCCCcEEEEEEEEe--------------cCc--EEEEcCEecCCCCCchhhhhhc----CCc
Confidence 112344443322222 1233457766554432 111 5899999999988886655432 211
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCC
Q 008090 426 TTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLM 505 (578)
Q Consensus 426 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~ 505 (578)
... +......++.++.|++|||+|+|.+..+.+.||||||||+|+||+.+. ..
T Consensus 361 ~~~-------------------~~~~~~~v~~~~~g~~V~ivl~~~~n~~~~~HP~HLHGh~F~Vl~~~g--------~~ 413 (499)
T 3pxl_A 361 TAQ-------------------DLLPSGSVYVLPSNASIEISFPATAAAPGAPHPFHLHGHTFAVVRSAG--------ST 413 (499)
T ss_dssp STT-------------------TSSSTTSEEEECTTCEEEEEEECCTTSCSCSCEEEETTCCEEEEECTT--------CC
T ss_pred ccc-------------------ccCCCceeEEecCCCEEEEEEecCcccCCCCccceecCCcEEEEeccC--------Cc
Confidence 100 011235688999999999999953323468999999999999998642 23
Q ss_pred CCCCCCCCcceeeeeCC---CcEEEEEEEccCceeeEEeeechhhhhccceEEEEEe
Q 008090 506 NFNLVDPMERNTIGVPA---GGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 506 ~~~~~~p~~rDTv~vpp---~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
.+|+.+|++||||.|++ ++|++|||++||||.|+|||||++|++.||+++|.+.
T Consensus 414 ~~n~~~P~~rDtv~v~~~~pg~~~~irf~adnPG~W~~HCHi~~H~~~Gm~~~~~e~ 470 (499)
T 3pxl_A 414 VYNYDNPIFRDVVSTGTPAAGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFAVVMAED 470 (499)
T ss_dssp CCCSSSCCEESEEECCCGGGTCEEEEEEECCSCEEEEEEESSHHHHHTTCEEEEEES
T ss_pred ccccCCCCccceEEcCCcCCCcEEEEEEEcCCCceEEEEeCChhHhhCCCcEEEEEC
Confidence 57889999999999997 9999999999999999999999999999999999654
No 6
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=100.00 E-value=8.6e-90 Score=740.57 Aligned_cols=457 Identities=26% Similarity=0.492 Sum_probs=354.8
Q ss_pred EEEEEEEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCC-----ceeEEEeeeeeccCCCCCCCCCcc
Q 008090 34 RHYTFNIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSN-----NVTIHWHGVRQVTSGWADGPAYVT 108 (578)
Q Consensus 34 ~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~-----~~siH~HG~~~~~~~~~DG~~~~~ 108 (578)
..|+|+|++..+++||+++.+|+|||++|||+|++++||+|+|+|+|.|+. +|+|||||+++...+|+||+|++|
T Consensus 5 ~~~~l~i~~~~~~pdg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~l~~~~~~~~tsiHwHGl~~~~~~~~DGv~~vt 84 (495)
T 3t6v_A 5 PVTDLHIVNADIVPDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFIT 84 (495)
T ss_dssp SEEEEEEEEEEECTTSCCEEEEEETTSSSCCEEEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTTT
T ss_pred CeEEEEEEEEEEcCCCceEEEEEECCcccCCeEEEECCcEEEEEEEECCCCccCCCceEEEeCCcccCCCccccCCCccc
Confidence 569999999999999999999999999999999999999999999999974 799999999999889999999999
Q ss_pred ccccCCCCeEEEEEEEcCCCCceeeecCcchhc-ccceeeEEEeCCCCC-CCCCCCCCCcEeEEeeecccCChHHHHHHH
Q 008090 109 QCPIQTGQSYTYNFTITGQRGTLLWHAHISWLR-STLYGPIIILPKRNE-SYPFQKPHKEIPILFGEWFNVDPEAIISQA 186 (578)
Q Consensus 109 q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~-~~p~~~~~~e~~l~~~d~~~~~~~~~~~~~ 186 (578)
||+|+||++|+|+|++++++||||||||...|+ +||+|+|||+++.+. ..++...++|++|+++||+++....+
T Consensus 85 q~pI~PG~sftY~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~~~~~~~~~~d~~e~~l~l~Dw~~~~~~~~---- 160 (495)
T 3t6v_A 85 QCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPNDPDANLYDVDDDTTIITLADWYHVLAKEM---- 160 (495)
T ss_dssp BCCBCTTCEEEEEEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTTCTTGGGCSBCSGGGEEEEEEECSSCGGGS----
T ss_pred cCCCCCCCeEEEEEEeCCCCceeeeeccchhHHhcCceEEEEEcCccccccccCCCCCceeEEEEecccCCchhhh----
Confidence 999999999999999878899999999999888 899999999987542 11222235678999999999876432
Q ss_pred HhcCCCCCCCceEEEcCccCCCcccC-CCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEec
Q 008090 187 LQTGAGPNVSDAYTINGLPGPLYNCS-SKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTD 265 (578)
Q Consensus 187 ~~~g~~~~~~~~~liNG~~~~~~~~~-~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d 265 (578)
.+..+..+++++|||+.. +..+. ....+.++|++|++|||||||+|..+.+.|+|+||+|+|||+||.+++|+.++
T Consensus 161 --~~~~p~~~d~~liNG~g~-~~~~~~~~~~~~~~v~~G~~~RlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~ 237 (495)
T 3t6v_A 161 --GAGGAITADSTLIDGLGR-THVNVAAVPLSVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVD 237 (495)
T ss_dssp --CSSSCCCCSEEEETTBCC-BSSSCCCCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEEEEETTEEEEEEEES
T ss_pred --ccCCCCCCcEEEECCcCc-CCCCcccCCceEEEEcCCCEEEEEEEecCCCeeEEEEECCCeEEEEEeCCcccCCEEee
Confidence 223344679999999953 22222 23567899999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCccccc
Q 008090 266 KLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDTSFAV 345 (578)
Q Consensus 266 ~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 345 (578)
+|.|+|||||||+|+++++. |+|+|++.+..++. .+.+....|+|+|.++... .+....+.. ... .
T Consensus 238 ~l~i~pGqR~dvlv~~~~~~--g~y~i~a~~~~~~~-~~~~~~~~ail~Y~~~~~~-----~p~~~~~~~-~~~-----~ 303 (495)
T 3t6v_A 238 EIQIFAAQRYSFVLNANQPV--GNYWIRANPNSGGE-GFDGGINSAILRYDGATTA-----DPVTVASTV-HTK-----C 303 (495)
T ss_dssp BEEECTTCEEEEEEECCSCS--SEEEEEEEESSSSC-SCGGGTTEEEEEETTSCSS-----CCCCCCCSS-CSS-----B
T ss_pred eEEEcCceEEEEEEECCCCC--ceEEEEEecccCcc-ccCCCceEEEEEECCCCCC-----CCCCCCCCC-Ccc-----c
Confidence 99999999999999999876 99999998754332 1223345799999875320 010000000 000 0
Q ss_pred ccccccccccCCCCCC-CCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhhhcCCCCCc
Q 008090 346 NFTRKFRSLASVKYPA-NVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYFFGQNNGV 424 (578)
Q Consensus 346 ~~~~~l~~l~~~~~p~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~ 424 (578)
.....|+++.....|. ..+..+++++.+.+.+ .+. .|++||++|..|+.|+|.+.+. |.
T Consensus 304 ~~~~~L~p~~~~~~p~~~~~~~~d~~~~l~~~~--------------~~~--~w~iNg~s~~~~~~P~L~~~~~----g~ 363 (495)
T 3t6v_A 304 LIETDLHPLSRNGVPGNPHQGGADCNLNLSLGF--------------ACG--NFVINGVSFTPPTVPVLLQICS----GA 363 (495)
T ss_dssp CCGGGCCBSSCCCCSSCSSTTCSSEEEECCEEE--------------ETT--EEEETTBCCCCCSSCHHHHHHT----TC
T ss_pred cccccccccccccCCCccCCCCCcEEEEEEEEe--------------cCc--EEEEcCEecCCCCCcchhhhhc----CC
Confidence 0012344443222221 1233456666554432 111 5899999999888886655432 22
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCC
Q 008090 425 YTTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDL 504 (578)
Q Consensus 425 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~ 504 (578)
+... +......++.++.|++|||+|+|. ...+.||||||||+|+||+.+. .
T Consensus 364 ~~~~-------------------~~~~~~~v~~~~~g~~V~ivl~~n--~~~~~HP~HLHGh~F~vl~~~g--------~ 414 (495)
T 3t6v_A 364 NTAA-------------------DLLPSGSVISLPSNSTIEIALPAG--AAGGPHPFHLHGHDFAVSESAS--------N 414 (495)
T ss_dssp CSST-------------------TSSSTTSEEEECTTCEEEEEEECC--SSSCCCEEEETTCCEEEEECTT--------C
T ss_pred cCcc-------------------cccCCcceEEecCCCEEEEEEccC--CCCCCcceeecCCcEEEEecCC--------C
Confidence 1100 011235688999999999999842 2458999999999999998642 2
Q ss_pred CCCCCCCCCcceeeeeCC-CcEEEEEEEccCceeeEEeeechhhhhccceEEEEEec
Q 008090 505 MNFNLVDPMERNTIGVPA-GGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQN 560 (578)
Q Consensus 505 ~~~~~~~p~~rDTv~vpp-~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~ 560 (578)
..+|+.+|.|||||.|++ |+|++|||++||||.|+|||||++|++.||+++|.+.+
T Consensus 415 ~~~n~~~P~~rDtv~v~~~g~~~~irf~adnPG~W~~HCHi~~H~~~Gm~~~~~e~~ 471 (495)
T 3t6v_A 415 STSNYDDPIWRDVVSIGGVGDNVTIRFCTDNPGPWFLHCHIDWHLDAGFAIVFAEDI 471 (495)
T ss_dssp CCCCSSSCCEESEEECCSTTCEEEEEEECCSCEEEEEEESCHHHHHTTCEEEEEETH
T ss_pred CCcccCCCCCccEEEcCCCCcEEEEEEEcCCCeeEEEEecchhHhhcCCeEEEEECh
Confidence 357889999999999997 89999999999999999999999999999999996543
No 7
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=100.00 E-value=6.6e-88 Score=739.09 Aligned_cols=472 Identities=26% Similarity=0.426 Sum_probs=361.3
Q ss_pred cccceeEEEEEEEEEEe--eecCcee-eeEEEECCCCCCcEEEEecCCEEEEEEEeCC-CCceeEEEeeeeeccCCCCCC
Q 008090 28 FAAGITRHYTFNIKYHN--VTRLCHT-RNIISVNGQFPGPSLVAREGDRVLIKVTNHV-SNNVTIHWHGVRQVTSGWADG 103 (578)
Q Consensus 28 ~~~~~~~~~~l~~~~~~--~~~~g~~-~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~~DG 103 (578)
+..+++++|+|++++.. ++++|+. +.+|+|||++|||+|+|++||+|+|+|+|.| .++|+|||||+++...+|+||
T Consensus 28 p~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~Ng~~PGP~i~~~~GD~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG 107 (559)
T 2q9o_A 28 PDTGVTQSYVFNLTEVDNWMGPDGVVKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDG 107 (559)
T ss_dssp CCCCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTBSSCCCEEEETTCEEEEEEEEECSSCCBCEEEETCCCTTCGGGSC
T ss_pred CCCCeEEEEEEEEEEeEeeECCCCccceEEEEECCcccCCcEEEeCCCEEEEEEEeCCCCCCceEEcCCCccCCCCCcCC
Confidence 34678999999999998 8899998 9999999999999999999999999999999 689999999999998889999
Q ss_pred CCCccccccCC-CCeEEEEEEEcCCCCceeeecCcchhc-ccceeeEEEeCCCCCCCCCCCCCCcE-eEEeeecccCChH
Q 008090 104 PAYVTQCPIQT-GQSYTYNFTITGQRGTLLWHAHISWLR-STLYGPIIILPKRNESYPFQKPHKEI-PILFGEWFNVDPE 180 (578)
Q Consensus 104 ~~~~~q~~i~p-G~~~~y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~p~~~~~~e~-~l~~~d~~~~~~~ 180 (578)
+|+++||+|+| |++++|+|++ .++||||||||...+. +||+|+|||+++... .+|+|. +|+++||++....
T Consensus 108 ~~~~tq~~I~P~G~~~~Y~f~~-~q~GT~wYH~H~~~q~~~Gl~G~liV~~~~~~-----~~d~d~~~l~l~Dw~~~~~~ 181 (559)
T 2q9o_A 108 ANGVTECPIPPKGGQRTYRWRA-RQYGTSWYHSHFSAQYGNGVVGTIQINGPASL-----PYDIDLGVFPITDYYYRAAD 181 (559)
T ss_dssp CBTTTBCCBCTTTEEEEEEEEC-CSCEEEEEEECSTTGGGGTCEEEEEEECCCSS-----CCSEEEEEEEEEEECSSCHH
T ss_pred CCccccCccCCCCCeEEEEEEC-CCCEEEEEEEcccchhcCCceEEEEecCCCcC-----CCcccceEEEEeccccCCHH
Confidence 99999999999 9999999997 7899999999998887 899999999987642 357887 9999999999888
Q ss_pred HHHHHHHhcCCCCCCCceEEEcCccCCCcccC-CCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcc
Q 008090 181 AIISQALQTGAGPNVSDAYTINGLPGPLYNCS-SKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYV 259 (578)
Q Consensus 181 ~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~-~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v 259 (578)
++..... ++.+..+++++|||+... .|. ....+.++|++|++|||||||+|+.+.+.|+|+||+|+||++||.++
T Consensus 182 ~~~~~~~--~~~~~~~d~~liNG~~~~--~~~~~g~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~gh~~~vi~~DG~~~ 257 (559)
T 2q9o_A 182 DLVHFTQ--NNAPPFSDNVLINGTAVN--PNTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPV 257 (559)
T ss_dssp HHHHHHT--TSCCCCBSEEEETTBCBC--TTTCCBCCCEEEECTTCEEEEEEEECCSSCCEEEEETTBCEEEEEETTEEE
T ss_pred HHhhhhh--cCCCCccceeEECCcccc--CcCCCCCceEEEEcCCCEEEEEEEecCCCceEEEEECCCceEEEecCCccc
Confidence 7654322 223445799999999753 242 23457899999999999999999999999999999999999999999
Q ss_pred cceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEee--cCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCC
Q 008090 260 KPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARP--YFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPS 337 (578)
Q Consensus 260 ~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~--~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~ 337 (578)
+|+.++++.|+|||||||+|++++++ |+|+|++.. ...+. ........++|+|.++.. ..+... ..+.
T Consensus 258 ~p~~~~~l~l~pgeR~dvlv~~~~~~--g~y~i~a~~~~~~~~~-~~~~~~~~ail~y~~~~~-----~~P~~~--~~~~ 327 (559)
T 2q9o_A 258 NAMTVDSLFLAVGQRYDVVIDASRAP--DNYWFNVTFGGQAACG-GSLNPHPAAIFHYAGAPG-----GLPTDE--GTPP 327 (559)
T ss_dssp EEEEESCEEECTTCEEEEEEECCSCS--SEEEEEEECCGGGTTC-CBSSSCCEEEEEETTSCC-----SCCCCC--CCCC
T ss_pred CceEeCeEEEccEEEEEEEEECCCCC--CcEEEEEEeccccccC-CCCCCceeEEEEECCCCC-----CCCCCC--CCcC
Confidence 99999999999999999999998865 899999986 32222 123445689999987532 001100 0000
Q ss_pred CCCcccccccccccccccCCCCCCC-CCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecC-cchhhhh
Q 008090 338 INDTSFAVNFTRKFRSLASVKYPAN-VPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLP-STAILQS 415 (578)
Q Consensus 338 ~~~~~~~~~~~~~l~~l~~~~~p~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p-~~~~l~~ 415 (578)
.+..... ...+.++.....|.. .....+.++.+.... ..+..+.|++||++|..+ ..|+|..
T Consensus 328 -~~~~~~~--~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~iNg~s~~~~~~~P~L~~ 391 (559)
T 2q9o_A 328 -VDHQCLD--TLDVRPVVPRSVPVNSFVKRPDNTLPVALDL-------------TGTPLFVWKVNGSDINVDWGKPIIDY 391 (559)
T ss_dssp -CCCTTCC--CSCCCBSSCCBCCCTTCCCCGGGEEEEEEEC-------------SSSSSCEEEETTBCCCCCTTSCHHHH
T ss_pred -CCccccc--ccccccCCCCCCCCcccccceeEEEEEEeec-------------CCCceEEEEECCEecccCCCCCcHhH
Confidence 0100000 011222211111111 111123344443321 122356799999999765 4576655
Q ss_pred hhcCCCCCcccCCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecC-CCEEEEEEeeCCC-CCCCCCCccccCCceEEEEe
Q 008090 416 YFFGQNNGVYTTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPF-NTSVELVMQDTSI-LGAESHPLHLHGFNFFVVGL 493 (578)
Q Consensus 416 ~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~~~l~N~~~-~~~~~HP~HlHG~~F~Vv~~ 493 (578)
.+.+. .+| ..+..++.++. +++++|+++|.+. ...+.||||||||+||||++
T Consensus 392 ~~~g~------~~~--------------------~~~~~~~~~~~~~~v~~~vi~n~~~~~~~~~HP~HLHGh~F~Vl~~ 445 (559)
T 2q9o_A 392 ILTGN------TSY--------------------PVSDNIVQVDAVDQWTYWLIENDPEGPFSLPHPMHLHGHDFLVLGR 445 (559)
T ss_dssp HHHTC------CCC--------------------CGGGCEEEECCSSCEEEEEEEECTTSSCCCCEEEEESSSCEEEEEE
T ss_pred hhcCC------ccC--------------------CCCceEEEcCCCCEEEEEEEeCCCccccCCCCcEEECCCceEEEec
Confidence 44321 111 12345666654 5778888888531 01579999999999999999
Q ss_pred cC---------CCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEecC
Q 008090 494 GF---------GNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQNG 561 (578)
Q Consensus 494 g~---------g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~ 561 (578)
+. |.|++......+++.+|.|||||.|++++|++|||+|||||.|+|||||++|++.|||++|.|.+.
T Consensus 446 g~~~~~~~~~~g~~~~~~~~~~~n~~~p~~RDTV~Vp~~g~v~IrF~adNPG~W~~HCHil~H~~~GM~~~~~v~~~ 522 (559)
T 2q9o_A 446 SPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFLERPA 522 (559)
T ss_dssp SCCCCTTSCCCCCCCHHHHGGGCCCBSCCEESEEEECTTSEEEEEEECCSCEEEEEEECCHHHHHTTCEEEEEECHH
T ss_pred ccccccccccccccCccccccccccCCCCccceEEccCCccEEEEEEcCCCeeEEEEecchhHhhcCCeEEEEECcc
Confidence 87 667653333567889999999999999999999999999999999999999999999999988753
No 8
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=100.00 E-value=8.5e-89 Score=738.33 Aligned_cols=469 Identities=29% Similarity=0.527 Sum_probs=358.2
Q ss_pred EEEEEEEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCC-----CceeEEEeeeeeccCCCCCCCCCcc
Q 008090 34 RHYTFNIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVS-----NNVTIHWHGVRQVTSGWADGPAYVT 108 (578)
Q Consensus 34 ~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~-----~~~siH~HG~~~~~~~~~DG~~~~~ 108 (578)
..|+|++++..++++|+++.+|+|||++ ||+|++++||+|+|+|+|.|+ ++|+|||||+++...+|+||+|+++
T Consensus 5 ~~~~l~i~~~~~~~~g~~~~~~~~NG~~-GP~i~~~~Gd~v~v~v~N~l~~~~~~~~tsiHwHG~~~~~~~~~DGv~~vt 83 (503)
T 1hfu_A 5 SVDTMTLTNANVSPDGFTRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVN 83 (503)
T ss_dssp SEEEEEEEEEEECTTSCCEEEEEETTBS-SCEEEEETTCCEEEEEEECCCCTTSCCSBCEEEETCCCTTCGGGSCCBTTT
T ss_pred CeEEEEEEEEEECCCCeEEEEEEECCcc-CCcEEEeCCCEEEEEEEeCCCCccCCCcccEeccceeccCCCccCCCcccc
Confidence 3599999999999999999999999999 999999999999999999998 9999999999998888999999999
Q ss_pred ccccCCCCeEEEEEEEcCCCCceeeecCcchhc-ccceeeEEEeCCCCC-CCCCCCCCCcEeEEeeecccCChHHHHHHH
Q 008090 109 QCPIQTGQSYTYNFTITGQRGTLLWHAHISWLR-STLYGPIIILPKRNE-SYPFQKPHKEIPILFGEWFNVDPEAIISQA 186 (578)
Q Consensus 109 q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~-~~p~~~~~~e~~l~~~d~~~~~~~~~~~~~ 186 (578)
||+|+||++|+|+|++++++||||||||.+.|. +||+|+|||+++.+. +.++...++|++|+++||++....++.
T Consensus 84 q~~I~PG~~~~Y~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~~e~~l~l~Dw~~~~~~~~~--- 160 (503)
T 1hfu_A 84 QCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDNDPHAALYDEDDENTIITLADWYHIPAPSIQ--- 160 (503)
T ss_dssp BCCBCTTCEEEEEECCTTCCEEEEEEECSTTGGGGTCEEEEEEECTTCTTGGGCSBCSTTSEEEEEEECSSCGGGCC---
T ss_pred cCCcCCCCeEEEEEEeCCCCccEEEEecchhhhhCcceeeEEEcCCCCCcccCCCCCCceEEEEEcccccCChHHhc---
Confidence 999999999999999768899999999999888 899999999987532 122222246999999999998766431
Q ss_pred HhcCCCCCCCceEEEcCccCCCcccCC-CCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEec
Q 008090 187 LQTGAGPNVSDAYTINGLPGPLYNCSS-KDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTD 265 (578)
Q Consensus 187 ~~~g~~~~~~~~~liNG~~~~~~~~~~-~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d 265 (578)
+ ...+++++|||+.. +.|.. ...+.++|++|++|||||||+|+.+.+.|+|+||+|+||++||.+++|+.++
T Consensus 161 ---~--~~~~d~~liNG~~~--~~~~~~~~~~~~~v~~g~~~RlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~~p~~~~ 233 (503)
T 1hfu_A 161 ---G--AAQPDATLINGKGR--YVGGPAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVD 233 (503)
T ss_dssp --------CCSEEEETTBCC--BTTCCCCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEEEEETTEEEEEEEES
T ss_pred ---C--CCCCCEEEECcccc--cCCCCCCcceEEEEcCCCEEEEEEEecCCcccEEEEEcCceEEEEeccCccccccccC
Confidence 1 12469999999974 45542 3458899999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCC---CCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCcc
Q 008090 266 KLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMG---TIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDTS 342 (578)
Q Consensus 266 ~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~---~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~~ 342 (578)
++.|+|||||||+|++++++ |+|+|++.......+ .+......++|+|.++... .+..... |.....++
T Consensus 234 ~l~l~pgeR~dvlv~~~~~~--g~y~i~a~~~~~~~~~~~~~~~~~~~ail~y~~~~~~---~p~~~~~-~~~~~l~~-- 305 (503)
T 1hfu_A 234 RLQIFTGQRYSFVLDANQPV--DNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAANA---DPTTSAN-PNPAQLNE-- 305 (503)
T ss_dssp BEEECTTCEEEEEEECCSCS--SEEEEEEEESSCGGGGGGCCGGGTTEEEEEETTSCSS---CCCCCCC-SSCCBCCG--
T ss_pred eEEEcccceEEEEEEcCCCc--cceeeeeccccCCcccccccCCCceEEEEEECCCCCC---CCCCCCC-CccCCCcc--
Confidence 99999999999999998865 899999986533211 1122234699999875431 0000001 11111110
Q ss_pred cccccccccccccCCCCCC-CCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhhhcCCC
Q 008090 343 FAVNFTRKFRSLASVKYPA-NVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYFFGQN 421 (578)
Q Consensus 343 ~~~~~~~~l~~l~~~~~p~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~~~ 421 (578)
..|.++.....|. ..+...+.++.++... .+. .|++||++|..++.|+|.+.+.
T Consensus 306 ------~~l~p~~~~~~p~~~~~~~~~~~~~l~~~~--------------~~~--~~~iNg~~~~~~~~P~l~~~~~--- 360 (503)
T 1hfu_A 306 ------ADLHALIDPAAPGIPTPGAADVNLRFQLGF--------------SGG--RFTINGTAYESPSVPTLLQIMS--- 360 (503)
T ss_dssp ------GGCBBSSSCSCSSCSSTTCSSEEEECCEEE--------------ETT--EEEETTBCCCCCSSCHHHHHHT---
T ss_pred ------ccccccCccCCCCcccCCcceEEEEEEeec--------------cCc--eEEECCCccCCCCCcchhhhhc---
Confidence 1233332222221 1112334433322211 111 5899999999888776655432
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCC
Q 008090 422 NGVYTTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPD 501 (578)
Q Consensus 422 ~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~ 501 (578)
|.+.. .....++.++.++.|+++||+++|.. +.+.||||||||+|+||+++.+.
T Consensus 361 -g~~~~-------------------~~~~~~~~~~~v~~g~~vei~l~~n~--~~~~HP~HLHGh~F~Vl~~~~~~---- 414 (503)
T 1hfu_A 361 -GAQSA-------------------NDLLPAGSVYELPRNQVVELVVPAGV--LGGPHPFHLHGHAFSVVRSAGSS---- 414 (503)
T ss_dssp -TCCSG-------------------GGSSSTTSEEEECSSCEEEEEEECCS--TTCCCEEEETTCCEEEEECTTCC----
T ss_pred -CCccc-------------------ccCCCCceEEEccCCCEEEEEEECCC--CCCCCCEEEecceEEEEecCCCC----
Confidence 21110 01234567899999999999999532 25899999999999999987542
Q ss_pred CCCCCCCCCCCCcceeeee-CCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEecCCCCCCCCCCCC-CCCCCC
Q 008090 502 KDLMNFNLVDPMERNTIGV-PAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQNGAQPNQTLPPPP-SDLPKC 578 (578)
Q Consensus 502 ~~~~~~~~~~p~~rDTv~v-pp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p-~~~~~c 578 (578)
.+++.+|.|||||.| ++++|++|||++||||.|+|||||++|++.|||++|.|.+.+. .++.++| ...+.|
T Consensus 415 ----~~n~~~p~~rDTV~V~ppg~~v~irf~adnPG~W~~HCHil~H~~~GM~~~~~v~~~~~--~~~~~~p~~~~~~C 487 (503)
T 1hfu_A 415 ----TYNFVNPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVFAEDMANT--VDANNPPVEWAQLC 487 (503)
T ss_dssp ----CCCCSSBCEESEEECCSTTCEEEEEEECCSCEEEEEEESSHHHHHTTCEEEEEECHHHH--HHHCCCCHHHHHHH
T ss_pred ----ccccCCCCeeeeEEecCCCceEEEEEEcCCCeeeeEecCchhHhhCCCeEEEEECchhh--hhccCCChHHhhhc
Confidence 357789999999999 9999999999999999999999999999999999999865432 2333344 335666
No 9
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=100.00 E-value=2.9e-81 Score=669.08 Aligned_cols=402 Identities=23% Similarity=0.355 Sum_probs=318.2
Q ss_pred cceeEEEEEEEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccc
Q 008090 30 AGITRHYTFNIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQ 109 (578)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q 109 (578)
.+.+++|+|++++..++++|+++.+|+|||++|||+|++++||+|+|+|+|.|+.+|+|||||+++.+ ++||++
T Consensus 13 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~--~~DG~~---- 86 (439)
T 2xu9_A 13 QGGLLSLKLSATPTPLAIAGQRATLLTYGGSFPGPTLRVRPRDTVRLTLENRLPEPTNLHWHGLPISP--KVDDPF---- 86 (439)
T ss_dssp BTTEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCEEEECTTCEEEEEEEECSSSCBCCEEETCCCCT--TTSCTT----
T ss_pred CCCeEEEEEEEEEEEEEcCCceEEEEEECCcccCCEEEEeCCCEEEEEEEECCCCCcceEeCCCCCCc--cccCCc----
Confidence 34678999999999999999999999999999999999999999999999999999999999999875 699986
Q ss_pred cccCCCCeEEEEEEEc-CCCCceeeecCcch----hc-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChH---
Q 008090 110 CPIQTGQSYTYNFTIT-GQRGTLLWHAHISW----LR-STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPE--- 180 (578)
Q Consensus 110 ~~i~pG~~~~y~f~~~-~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~--- 180 (578)
+.|+||++++|+|+++ +++||||||||.++ +. +||+|+|||+++.+. .+....++|++|+++||+.+...
T Consensus 87 ~~I~PG~~~~Y~f~~~~~~~GT~wYH~H~~~~t~~q~~~Gl~G~liV~~~~~~-~~~~~~~~e~~l~l~D~~~~~~~~~~ 165 (439)
T 2xu9_A 87 LEIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVESSLDA-IPELREAEEHLLVLKDLALQGGRPAP 165 (439)
T ss_dssp CCBCTTCEEEEEEECCSSCCEEEEEECCCTTSHHHHHHTTCCEEEEECCGGGG-SHHHHTSEEEEEEEEEECEETTEECC
T ss_pred ccCCCCCeEEEEEecCCCCCcceEeccCCCCchHHHHHhhCeEEEEEcCcccc-CccCCCCCcEEEEEEeeeeCCCCcCC
Confidence 4599999999999985 48999999999864 44 899999999987532 11113578999999999877531
Q ss_pred -HHHHHHHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcc
Q 008090 181 -AIISQALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYV 259 (578)
Q Consensus 181 -~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v 259 (578)
..+. ...+ ..++.++|||+.+ +.++|++| +|||||||+|+.+.+.|+|+||+|+||+.||+++
T Consensus 166 ~~~~~--~~~g---~~~~~~~iNG~~~----------p~l~v~~g-~~RlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~ 229 (439)
T 2xu9_A 166 HTPMD--WMNG---KEGDLVLVNGALR----------PTLVAQKA-TLRLRLLNASNARYYRLALQDHPLYLIAADGGFL 229 (439)
T ss_dssp CCHHH--HHHC---CCCSEEEETTEES----------CEEECSSS-EEEEEEEECCSSCCEEEEETTBCEEEEEETTEEE
T ss_pred CCccc--cccC---CCCCEEEECCccC----------CcEEecCC-eEEEEEEecCCCceEEEEECCceEEEEecCCCCC
Confidence 0011 1112 2458999999965 67999999 9999999999999999999999999999999998
Q ss_pred -cceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCC--------------CCCCcceEEEEEEeCCCCCCcC
Q 008090 260 -KPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMG--------------TIDNSTTAGILEYKHPSNHSIS 324 (578)
Q Consensus 260 -~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~--------------~~~~~~~~ail~y~~~~~~~~~ 324 (578)
+|+.++++.|+|||||||+|+++++ |+|+|+|+....+.. ........++++|.++..
T Consensus 230 ~~p~~~~~l~l~pgeR~dv~v~~~~~---G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 302 (439)
T 2xu9_A 230 EEPLEVSELLLAPGERAEVLVRLRKE---GRFLLQALPYDRGAMGMMDMGGMAHAMPQGPSRPETLLYLIAPKNPK---- 302 (439)
T ss_dssp EEEEEESCEEECTTCEEEEEEECCSS---EEEEEEEECCCCCCEEEECSSSCCEEEECCSCCCEEEEEEEECSSCC----
T ss_pred CCceEeceEEECCceeEEEEEEcCCC---ceEEEEecccccCCccccccccccccccCCCCCcceeEEEEecCCCc----
Confidence 8999999999999999999999985 999999986543210 001235678888876422
Q ss_pred ccccCCCCCCCCCCCCcccccccccccccccCCCCCCCCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeeccee
Q 008090 325 SKKLQLYKPTLPSINDTSFAVNFTRKFRSLASVKYPANVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVS 404 (578)
Q Consensus 325 ~~~~~~~~p~~~~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s 404 (578)
+..+ |... ..+..+ + .+ ..++++.++... . + ..|.+||++
T Consensus 303 ---~~~~-p~~l------------~~~~~l-----~--~~-~~~r~~~l~~~~--~------------g--~~~~iNg~~ 342 (439)
T 2xu9_A 303 ---PLPL-PKAL------------SPFPTL-----P--AP-VVTRRLVLTEDM--M------------A--ARFFINGQV 342 (439)
T ss_dssp ---CCCC-CSCC------------CCCCCC-----C--CC-SEEEEEEEEEEG--G------------G--TEEEETTBC
T ss_pred ---cccC-cccC------------CCcccC-----C--CC-CcceEEEEEeec--c------------C--ceEeECCEE
Confidence 0111 1100 001111 0 11 123666665432 0 1 257899887
Q ss_pred eecCcchhhhhhhcCCCCCcccCCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCcccc
Q 008090 405 FVLPSTAILQSYFFGQNNGVYTTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLH 484 (578)
Q Consensus 405 ~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlH 484 (578)
|..+. ..+.++.|++|+|+|+|.+ .+.||||||
T Consensus 343 ~~~~~--------------------------------------------~~~~~~~g~~~~~~~~N~~---~~~HP~HLH 375 (439)
T 2xu9_A 343 FDHRR--------------------------------------------VDLKGQAQTVEVWEVENQG---DMDHPFHLH 375 (439)
T ss_dssp CCTTC--------------------------------------------CCEEECTTCEEEEEEEECS---SSCEEEEES
T ss_pred CCCCC--------------------------------------------CceecCCCCEEEEEEEcCC---CCCCCceeC
Confidence 73221 1245788999999999964 489999999
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEe
Q 008090 485 GFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 485 G~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
||+||||+++.+. +.+|.|||||.|+|+++++|||++||||.|+|||||++||+.|||++|+|.
T Consensus 376 G~~F~Vl~~~g~~-----------~~~p~~rDTv~v~p~~~v~i~f~adnpG~w~~HCHil~H~~~GMm~~~~Vg 439 (439)
T 2xu9_A 376 VHPFQVLSVGGRP-----------FPYRAWKDVVNLKAGEVARLLVPLREKGRTVFHCHIVEHEDRGMMGVLEVG 439 (439)
T ss_dssp SCCBEEEEETTEE-----------CSSCCCBSEEEECTTCEEEEEEECCSCEEEEEEESSHHHHHTTCEEEEEEC
T ss_pred CCcEEEEeeCCCC-----------CCCCCCeEEEEeCCCCEEEEEEEcCCCCCEEEECCcchhhhcCCcEEEEeC
Confidence 9999999987543 236899999999999999999999999999999999999999999999984
No 10
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=100.00 E-value=4.5e-81 Score=668.39 Aligned_cols=405 Identities=16% Similarity=0.208 Sum_probs=315.5
Q ss_pred eEEEEEEEEEEeeec-CceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccc
Q 008090 33 TRHYTFNIKYHNVTR-LCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCP 111 (578)
Q Consensus 33 ~~~~~l~~~~~~~~~-~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~ 111 (578)
.++|+|++++..+++ +|..+.+|+|||++|||+|++++||+|+|+|+|.|+++|+|||||+++... +||+| ||+
T Consensus 18 ~~~~~l~~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~--~DG~~---~~~ 92 (451)
T 2uxt_A 18 GQPLFMTVQRAHWSFTPGTRASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMTVAGLQVPGP--LMGGP---ARM 92 (451)
T ss_dssp SCCEEEEEEECCGGGCSSSSSCCEEETTSSBCCEEEEETTCEEEEEEEECSSSCBCEEEETCCCCGG--GSCSG---GGC
T ss_pred ceEEEEEEEEEEEEcCCCceeEEEEECCcccCceEEEeCCCEEEEEEEECCCCCccEEECCccCCCC--CCCCC---cCc
Confidence 578999999999998 799999999999999999999999999999999999999999999999987 99997 899
Q ss_pred cCCCCeEEEEEEEcCCCCceeeecCcch----hc-ccceeeEEEeCCCCCCCCCCC--CCCcEeEEeeecccCChHHHHH
Q 008090 112 IQTGQSYTYNFTITGQRGTLLWHAHISW----LR-STLYGPIIILPKRNESYPFQK--PHKEIPILFGEWFNVDPEAIIS 184 (578)
Q Consensus 112 i~pG~~~~y~f~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~p~~~--~~~e~~l~~~d~~~~~~~~~~~ 184 (578)
|+||++++|+|++.+++||||||||.++ |. +||+|+|||+++.+...+++. .++|++|+++||+.+...++..
T Consensus 93 i~PG~~~~Y~f~~~~~~GT~wYH~H~~~~t~~q~~~Gl~G~liV~~~~~~~~~~p~~y~~~e~~l~l~D~~~~~~~~~~~ 172 (451)
T 2uxt_A 93 MSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEY 172 (451)
T ss_dssp BCTTCEECCEEECCSCSEEEEEEECCTTTHHHHHHTTCEEEEEEECHHHHHSSSCCCBTTTEEEEEEEEEEECTTSCEEC
T ss_pred CCCCCeEEEEEEcCCCCcceEEecCCCCchhhhHhhcceEEEEEecCcccccCCCccCCCceEEEEEEeeecCCCCceec
Confidence 9999999999998556999999999854 44 899999999988654333332 4789999999998876543210
Q ss_pred HHHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEE-cCceEEEEeecCCcc-cce
Q 008090 185 QALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSI-ANHTLTVVEADAVYV-KPF 262 (578)
Q Consensus 185 ~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l-~gh~~~via~DG~~v-~P~ 262 (578)
...+..+..+++++|||+.+ +.++|++| +|||||||+|+.+.+.|+| +||+|+||++||+++ +|+
T Consensus 173 --~~~~~~~~~~d~~liNG~~~----------p~~~v~~g-~~RlRliNa~~~~~~~~~i~dg~~~~vi~~DG~~~~~P~ 239 (451)
T 2uxt_A 173 --NEPGSGGFVGDTLLVNGVQS----------PYVEVSRG-WVRLRLLNASNSRRYQLQMNDGRPLHVISGDQGFLPAPV 239 (451)
T ss_dssp --CCCSSSCCCCSEEEETTEES----------CEEEECSS-EEEEEEEECCSSCCEEEEETTSCCEEEEECSSSEEEEEE
T ss_pred --ccccCCCCcCCEEEECCccc----------ceEEecCC-EEEEEEEccCCceeEEEEECCCCeEEEEEeCCCccCCce
Confidence 01122334679999999975 57999999 9999999999999999999 899999999999998 899
Q ss_pred EecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCC-------CCCCcceEEEEEEeCCCCCCcCccccCCCCCCC
Q 008090 263 DTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMG-------TIDNSTTAGILEYKHPSNHSISSKKLQLYKPTL 335 (578)
Q Consensus 263 ~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~-------~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~ 335 (578)
.++++.|+|||||||+|++++. +.|+|++.....+.+ ........++++|..+... .... ..+
T Consensus 240 ~~~~l~l~pgeR~dvlv~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~---~~~~----~~~ 309 (451)
T 2uxt_A 240 SVKQLSLAPGERREILVDMSNG---DEVSITCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLL---PLVT----DSL 309 (451)
T ss_dssp EESSEEECTTCEEEEEEECTTC---CCEEEEC----------------CCCCSCCEEEEEEECSCC---C--------CC
T ss_pred EeceEEECceeEEEEEEEeCCC---CEEEEEecCccccccccccccccCCCCCCcceEEEEecCCC---cCcc----ccC
Confidence 9999999999999999999874 899999876433211 0122344688888765320 0000 111
Q ss_pred CCCCCcccccccccccccccCCCCCCCCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhh
Q 008090 336 PSINDTSFAVNFTRKFRSLASVKYPANVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQS 415 (578)
Q Consensus 336 ~~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~ 415 (578)
|. .|.++... + .+...++++.+ +. .|++||++|..+
T Consensus 310 p~------------~L~~~~~~--~--~~~~~~~~~~l--~~-------------------~~~iNg~~f~~~------- 345 (451)
T 2uxt_A 310 PM------------RLLPTEIM--A--GSPIRSRDISL--GD-------------------DPGINGQLWDVN------- 345 (451)
T ss_dssp CS------------CSSSSCCC--C--CCCSEEEEEEE--CS-------------------SSSBTTBCCCTT-------
T ss_pred cc------------ccCCCCCC--C--CCCcceEEEEE--ee-------------------EEEECCEeCCCC-------
Confidence 11 11121111 1 12222333322 11 367888776322
Q ss_pred hhcCCCCCcccCCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecC
Q 008090 416 YFFGQNNGVYTTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGF 495 (578)
Q Consensus 416 ~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~ 495 (578)
...+.++.|++|+|+|+|. +.||||||||+||||++++
T Consensus 346 -------------------------------------~~~~~~~~G~~~~~~l~N~-----~~HP~HLHGh~F~Vl~~~G 383 (451)
T 2uxt_A 346 -------------------------------------RIDVTAQQGTWERWTVRAD-----EPQAFHIEGVMFQIRNVNG 383 (451)
T ss_dssp -------------------------------------CCCEEEETTCEEEEEEEEE-----EEEEEEETTCEEEEEEETT
T ss_pred -------------------------------------CCcEEcCCCCEEEEEEECC-----CCcCeEECCceEEEEeeCC
Confidence 1134678899999999994 6899999999999999863
Q ss_pred CCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccCcee----eEEeeechhhhhccceEEEEEecCC
Q 008090 496 GNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADNPGV----WFMHCHLDVHTSWGLRMAWIVQNGA 562 (578)
Q Consensus 496 g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~----wl~HCHil~H~d~GM~~~~~V~~~~ 562 (578)
. .+++.+|.|||||.| +++++|+|+|||||. |||||||++|||.|||++|+|.+.+
T Consensus 384 ~---------~~~~~~p~~rDTv~v--g~~~~i~~~~dnpg~~~g~w~~HCHil~H~d~GMm~~~~v~~~~ 443 (451)
T 2uxt_A 384 A---------MPFPEDRGWKDTVWV--DGQVELLVYFGQPSWAHFPFYFNSQTLEMADRGSIGQLLVNPVP 443 (451)
T ss_dssp B---------CCCGGGSSCBSEEEE--EEEEEEEEECCSCCBTTBCEEEEESSHHHHHTTCEEEEEEECSC
T ss_pred c---------CCCcccCCCccEEEE--CCEEEEEEEeCCCCCCCCceEEeCCchhHHhCCCcEEEEEccCc
Confidence 2 345668999999999 999999999999988 9999999999999999999998654
No 11
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A*
Probab=100.00 E-value=3e-78 Score=657.20 Aligned_cols=421 Identities=19% Similarity=0.305 Sum_probs=315.6
Q ss_pred eEEEEEEEEEEe--eecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCcccc
Q 008090 33 TRHYTFNIKYHN--VTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQC 110 (578)
Q Consensus 33 ~~~~~l~~~~~~--~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~ 110 (578)
.++|+|++++.. +.++|..+.+|+|||++|||+|++++||+|+|+|+|.|+.+++|||||+++... +||++ ||
T Consensus 36 ~~~~~l~~~~~~~~~~p~~~~~~~~~~NG~~PGPtI~~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~--~DG~~---~~ 110 (534)
T 3abg_A 36 IWYYEVEIKPFTHQVYPDLGSADLVGYDGMSPGPTFQVPRGVETVVRFINNAEAPNSVHLHGSFSRAA--FDGWA---ED 110 (534)
T ss_dssp CEEEEEEEECCEECCSTTTCCEECBEETSCSSEEEEEEETTCCEEEEEEECSSSCBCEEEETCCCCTT--TTTCS---SS
T ss_pred eEEEEEEEEEEEEEecCCCCceeEEEECCcCcCceEEEeCCcEEEEEEEECCCCCceEEECCCcCCCC--CCCCC---CC
Confidence 478999999654 567788899999999999999999999999999999999999999999998764 99985 79
Q ss_pred ccCCCCeEEEEEEEcCCCCceeeecCcchhc-----ccceeeEEEeCCCCCCCCCCC--CCCcEeEEeeecccCChHHHH
Q 008090 111 PIQTGQSYTYNFTITGQRGTLLWHAHISWLR-----STLYGPIIILPKRNESYPFQK--PHKEIPILFGEWFNVDPEAII 183 (578)
Q Consensus 111 ~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~-----~Gl~G~liV~~~~~~~~p~~~--~~~e~~l~~~d~~~~~~~~~~ 183 (578)
+|.||++++|+|++.+++||||||||.++++ +||+|+|||+++.+...+++. .+.|++|+++||+.....++.
T Consensus 111 ~i~PG~~~~Y~f~~~~~~GT~WYH~H~~~~t~~q~~~Gl~G~liV~~~~~~~~~lp~~~~~~d~~l~l~d~~~~~~g~~~ 190 (534)
T 3abg_A 111 ITEPGSFKDYYYPNRQSARTLWYHDHAMHITAENAYRGQAGLYMLTDPAEDALNLPSGYGEFDIPMILTSKQYTANGNLV 190 (534)
T ss_dssp CBSSCSCCCEEECCCSSSCEEEEEECCTTCHHHHHHTBCEEEEEEECTTTTTSCTTCCHHHHSCCEEEEEECBCSSSCBC
T ss_pred CCCCCCeEEEEEecCCcceeEEEecCccccchhhhhhcceEEEEEECCcccccCCCccCCcceEEEEEeeeeecCCCcee
Confidence 9999999999999866689999999998643 799999999998765544443 267899999999776543321
Q ss_pred HHHHhcC-CCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcC-------ceEEEEeec
Q 008090 184 SQALQTG-AGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIAN-------HTLTVVEAD 255 (578)
Q Consensus 184 ~~~~~~g-~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~g-------h~~~via~D 255 (578)
. ..+ .....++.++|||+.+ +.+.|++ ++|||||||+|+.+.+.|+|++ |+|+||++|
T Consensus 191 ~---~~~~~~~~~gd~~lvNG~~~----------p~~~v~~-~~~RlRliNa~~~~~~~l~i~~~~~~~~~h~~~vIa~D 256 (534)
T 3abg_A 191 T---TNGELNSFWGDVIHVNGQPW----------PFKNVEP-RKYRFRFLDAAVSRSFGLYFADTDAIDTRLPFKVIASD 256 (534)
T ss_dssp C---CTTCSSCCCCSEEEETTEES----------CBCBCCS-SEEEEEEEECCSSCCEEEEECCSSSTTCCCCEEEEEET
T ss_pred c---cCCCCccccCceeccCCccC----------ceEEecC-cEEEEEEEecCCcceEEEEEecccCcCCCccEEEEEeC
Confidence 1 011 1233578999999987 4578888 5899999999999999999987 999999999
Q ss_pred CCcc-cceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCC-CCC-CCCCcceEEEEEEeCCCCCCcCccccCCCC
Q 008090 256 AVYV-KPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFS-GMG-TIDNSTTAGILEYKHPSNHSISSKKLQLYK 332 (578)
Q Consensus 256 G~~v-~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~-~~~-~~~~~~~~ail~y~~~~~~~~~~~~~~~~~ 332 (578)
|+++ +|+.+++|.|+|||||||+|++++.+ |.+|+|+...... +.+ ........++++|..+... ......
T Consensus 257 G~~~~~P~~~~~l~l~pgeR~dvlv~~~~~~-g~~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~--~~~~~~--- 330 (534)
T 3abg_A 257 SGLLEHPADTSLLYISMAERYEVVFDFSDYA-GKTIELRNLGGSIGGIGTDTDYDNTDKVMRFVVADDT--TQPDTS--- 330 (534)
T ss_dssp TEEEEEEEEESCEEECTTCEEEEEEECSSCT-TSEEEEECCCCSSSSCCSCSSSTTTSEEEEEECCCCS--SCSCCC---
T ss_pred CCcccCceEeceEEECCccEEEEEEEcCCCC-CceEEEEeccccccccccccCcCCcceeEEEecCCCC--cCCCCC---
Confidence 9865 99999999999999999999998854 2479999754211 111 1112244688999765330 000000
Q ss_pred CCCCCCCCcccccccccccccccCCCCCCCCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchh
Q 008090 333 PTLPSINDTSFAVNFTRKFRSLASVKYPANVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAI 412 (578)
Q Consensus 333 p~~~~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~ 412 (578)
..| ..|+.+. .+. .+...++++.+ .. . ...|++||++|..+..+
T Consensus 331 -~~P------------~~L~~~~---~p~-~~~~~~~~~~~--~~--------------~--~~~w~iNG~~f~~~~~p- 374 (534)
T 3abg_A 331 -VVP------------ANLRDVP---FPS-PTTNTPRQFRF--GR--------------T--GPTWTINGVAFADVQNR- 374 (534)
T ss_dssp -CCC------------CCCCCCS---CCC-CCCCCCEEEEC--SC--------------C--CSTTCCCCBTTBCTTSC-
T ss_pred -CCc------------cccccCC---CCC-CccccceEEEE--ec--------------c--CceeEECCcccCCCCCc-
Confidence 011 0111111 111 11223444432 11 0 12478898877433111
Q ss_pred hhhhhcCCCCCcccCCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEE
Q 008090 413 LQSYFFGQNNGVYTTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVG 492 (578)
Q Consensus 413 l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~ 492 (578)
....++.|++|+|+|+|.+ ..+.||||||||+|||++
T Consensus 375 -----------------------------------------~l~~v~~G~~~~w~i~N~~--~~~~HP~HLHG~~F~Vl~ 411 (534)
T 3abg_A 375 -----------------------------------------LLANVPVGTVERWELINAG--NGWTHPIHIHLVDFKVIS 411 (534)
T ss_dssp -----------------------------------------CCCEECTTCEEEEEEEECS--SSCCCCEEESSCCEEEEE
T ss_pred -----------------------------------------ceeeccCCCEEEEEEEcCC--CCCCcCEEECCeeEEEEE
Confidence 0124678999999999964 236999999999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEE-ccCceeeEEeeechhhhhccceEEEEEecCC
Q 008090 493 LGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFF-ADNPGVWFMHCHLDVHTSWGLRMAWIVQNGA 562 (578)
Q Consensus 493 ~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~-adnpG~wl~HCHil~H~d~GM~~~~~V~~~~ 562 (578)
++.|.+. ....++++ .|||||.|+|+++++|||+ +||||.|+|||||++|++.|||+.|.|...+
T Consensus 412 ~~~g~~~----~~~~~~~~-~~rDTV~v~pg~~v~I~~~~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~ 477 (534)
T 3abg_A 412 RTSGNNA----RTVMPYES-GLKDVVWLGRRETVVVEAHYAPFPGVYMFHCHNLIHEDHDMMAAFNATVLP 477 (534)
T ss_dssp ESSCCSS----SCCCSGGG-SCBSEECCCSSEEEEEEEECCSCCEEEEEEESCHHHHHTTCEEEEEECSSC
T ss_pred EcCCCCc----CcCCcccc-CCcCeEEcCCCCEEEEEEEECCCCccEEEecChHHHHhcCCceEEEEEecc
Confidence 9655332 11234455 8999999999999999998 8999999999999999999999999998754
No 12
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A
Probab=100.00 E-value=1.2e-77 Score=652.40 Aligned_cols=430 Identities=18% Similarity=0.243 Sum_probs=315.0
Q ss_pred eEEEEEEEEEEeeecC--ceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCC----------------------ceeE
Q 008090 33 TRHYTFNIKYHNVTRL--CHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSN----------------------NVTI 88 (578)
Q Consensus 33 ~~~~~l~~~~~~~~~~--g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~----------------------~~si 88 (578)
..+|+|++++....+. +..+.+|+|||++|||+|+|++||+|+|+|+|+|+. +|+|
T Consensus 25 ~~~~~l~~~~~~~~~~~~~~~~~~~~~NG~~PGPtI~~~~Gd~v~v~v~N~L~~~~~~~~~~t~~~~~~~~~~~~~~tsi 104 (513)
T 2wsd_A 25 KTYYEVTMEECTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVV 104 (513)
T ss_dssp CEEEEEEEEEEEECSSTTSCCEEEEEETTBSSCCBEEEETTCCEEEEEEECCCSSCSSCCCTTSCC-----CCCSCCBCE
T ss_pred ceEEEEEEEEeeeeeCCCCCCceEEEECCCccCceEEECCCCEEEEEEEeCCCccccCccccccccccccccCCCCCcEE
Confidence 4559999999877654 468999999999999999999999999999999975 9999
Q ss_pred EEeeeeeccCCCCCCCCC--ccccccCCCCe---EEEEEEEcCCCCceeeecCcchh----c-ccceeeEEEeCCCCCCC
Q 008090 89 HWHGVRQVTSGWADGPAY--VTQCPIQTGQS---YTYNFTITGQRGTLLWHAHISWL----R-STLYGPIIILPKRNESY 158 (578)
Q Consensus 89 H~HG~~~~~~~~~DG~~~--~~q~~i~pG~~---~~y~f~~~~~~Gt~wYH~H~~~~----~-~Gl~G~liV~~~~~~~~ 158 (578)
||||+++.+. +||+|+ ++||+|+||++ ++|+|++.+++||||||||.++. . +||+|+|||+++.+...
T Consensus 105 HwHGl~~~~~--~DG~p~~~i~~g~i~pG~~f~~~~Y~f~~~~~~GT~wYH~H~~~~t~~q~~~Gl~G~liV~~~~~~~~ 182 (513)
T 2wsd_A 105 HLHGGVTPDD--SDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRL 182 (513)
T ss_dssp EEETCCCCGG--GSCCTTSCBCGGGSSBCTTCCCSEEEECCCSCCEEEEEEECCTTTHHHHHHHTCEEEEEEECGGGGGG
T ss_pred EcCCCcCCCc--cCCCCcccccCCcccCCCccceEEEEEecCCCccceEECCCCCCcchhhhhccCeEEEEEeccccccc
Confidence 9999998854 999996 78999999955 49999975689999999999753 3 79999999999876555
Q ss_pred CCCCCCCcEeEEeeecccCChHHHHHHHHh----------cCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEE
Q 008090 159 PFQKPHKEIPILFGEWFNVDPEAIISQALQ----------TGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYL 228 (578)
Q Consensus 159 p~~~~~~e~~l~~~d~~~~~~~~~~~~~~~----------~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~r 228 (578)
+++..++|++|+++||+.+...++...... .......+++++|||+.+ +.+++++| +||
T Consensus 183 ~lp~~d~d~~l~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~----------p~~~v~~~-~~R 251 (513)
T 2wsd_A 183 KLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGKVW----------PYLEVEPR-KYR 251 (513)
T ss_dssp CCCCGGGEEEEEEEEEEECTTSCEECCSSCSSCCTTSCSSCCCSCCCCSEEEETTEES----------CEEECCSS-EEE
T ss_pred cCCCCCCcEEEEEEeeecCCCCceecccccccccccccccccccccccceEEECCccc----------ceEEecCC-EEE
Confidence 555678999999999987654332111000 001123579999999986 56889885 899
Q ss_pred EEEEecCCCCeEEEEEcCc-eEEEEeecCCcc-cceEecEEEeCCCceEEEEEEcCCCCCCCc-eEEEEeecCCCCCCCC
Q 008090 229 LRLINAALNDELFFSIANH-TLTVVEADAVYV-KPFDTDKLLITPGQTANVLLRTKPYFPNAT-FFMQARPYFSGMGTID 305 (578)
Q Consensus 229 lRliN~~~~~~~~~~l~gh-~~~via~DG~~v-~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~-y~l~~~~~~~~~~~~~ 305 (578)
|||||+|+.+.+.|+|+|| +|+||++||+++ +|+.++++.|+|||||||+|++++.+ |+ +.+.... .+.....
T Consensus 252 lRliNa~~~~~~~~~i~~~~~~~via~DG~~~~~P~~~~~l~l~pgeR~dvlv~~~~~~--g~~~~l~~~~--~~~~~~~ 327 (513)
T 2wsd_A 252 FRVINASNTRTYNLSLDNGGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIIIDFTAYE--GESIILANSA--GCGGDVN 327 (513)
T ss_dssp EEEEECCSSCCEEEEETTCCCEEEEEETTEEEEEEEEESEEEECTTCEEEEEEECGGGT--TCEEEEEECC--CSSSSCC
T ss_pred EEEEccCCcceEEEEECCCCeEEEEccCCCcccCceEeCeEEECCeeeEEEEEECCCCC--CcEEEEEecc--cccccCC
Confidence 9999999999999999999 999999999998 89999999999999999999998864 65 3443322 1211112
Q ss_pred CcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCcccccccccccccccCCCCCCCCCcccceEEEEEecCCCCCCCCC
Q 008090 306 NSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDTSFAVNFTRKFRSLASVKYPANVPQIVDRKFFFTVGLGSNPCPKN 385 (578)
Q Consensus 306 ~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~ 385 (578)
.....++++|..+... ...... .+|.. +..+.. .+ ..+...++++.++.....
T Consensus 328 ~~~~~~il~~~~~~~~--~~~~~~----~~p~~------------l~~~~~--~~-~~~~~~~~~~~l~~~~~~------ 380 (513)
T 2wsd_A 328 PETDANIMQFRVTKPL--AQKDES----RKPKY------------LASYPS--VQ-HERIQNIRTLKLAGTQDE------ 380 (513)
T ss_dssp TTTTTEEEEEECCSCC--SSCCCC----CCCSB------------CSCCGG--GC-CCCEEEEEEEEEEEEECT------
T ss_pred CCCCcceEEEEeccCc--ccCccC----CCCcc------------ccCCCC--cc-cCCCcceEEEEEEeecCC------
Confidence 2244688999875320 000001 11110 110000 00 011223455555433211
Q ss_pred CcccCCCCCeeEeeecceeeecCcchhhhhhhcCCCCCcccCCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEE
Q 008090 386 TTCQGPNGTKFSASVNNVSFVLPSTAILQSYFFGQNNGVYTTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVE 465 (578)
Q Consensus 386 ~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~ 465 (578)
. +...|.+||++|..+ ..+.++.|++|+
T Consensus 381 ------~-g~~~~~iNg~~~~~~---------------------------------------------~~~~~~~g~~~~ 408 (513)
T 2wsd_A 381 ------Y-GRPVLLLNNKRWHDP---------------------------------------------VTETPKVGTTEI 408 (513)
T ss_dssp ------T-SCEEEEETTBCTTSC---------------------------------------------CCBCCBTTCEEE
T ss_pred ------C-CCceEeECCccCCCc---------------------------------------------ccEecCCCCEEE
Confidence 1 234577898766321 012456799999
Q ss_pred EEEeeCCCCCCCCCCccccCCceEEEEecCC---CCCCCC------CCCCCCCCCCCcceeeeeCCCcEEEEEEEc-cCc
Q 008090 466 LVMQDTSILGAESHPLHLHGFNFFVVGLGFG---NYDPDK------DLMNFNLVDPMERNTIGVPAGGWVAIRFFA-DNP 535 (578)
Q Consensus 466 ~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g---~~~~~~------~~~~~~~~~p~~rDTv~vpp~g~v~irf~a-dnp 535 (578)
|+|+|.+ .+.||||||||+||||+++.. .|++.. ........++.|||||.|+|+++++|+|++ |||
T Consensus 409 w~l~N~~---~~~HP~HlHG~~F~Vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rDTv~v~pg~~~~i~~~f~dnp 485 (513)
T 2wsd_A 409 WSIINPT---RGTHPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVPPPPSEKGWKDTIQAHAGEVLRIAATFGPYS 485 (513)
T ss_dssp EEEEECS---SSCEEEEESSCCEEEEEEEEBCHHHHHHHCCCCBSSCCBCCCGGGSSCBSEEEECTTEEEEEEEECCSCC
T ss_pred EEEEcCC---CCCcCEeEeCceEEEEEecCcccccccccccccccCCCCCCCccccCcccEEEeCCCCEEEEEEEecCCC
Confidence 9999964 489999999999999998642 121110 000112234569999999999999999999 899
Q ss_pred eeeEEeeechhhhhccceEEEEEecC
Q 008090 536 GVWFMHCHLDVHTSWGLRMAWIVQNG 561 (578)
Q Consensus 536 G~wl~HCHil~H~d~GM~~~~~V~~~ 561 (578)
|.|+|||||++|++.|||+.|+|.++
T Consensus 486 G~w~~HCHil~H~~~GMm~~~~V~~~ 511 (513)
T 2wsd_A 486 GRYVWHCHALEHEDYDMMRPMDITDP 511 (513)
T ss_dssp EEEEEEESCHHHHTTTCEEEEEEBCC
T ss_pred CCEEEEcCChhhhhcCCceeEEEeCC
Confidence 99999999999999999999999753
No 13
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=100.00 E-value=1.9e-77 Score=640.21 Aligned_cols=414 Identities=20% Similarity=0.276 Sum_probs=309.1
Q ss_pred ccceeEEEEEEEEEEeeec-CceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCc
Q 008090 29 AAGITRHYTFNIKYHNVTR-LCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYV 107 (578)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~-~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~ 107 (578)
..+.+++|+|++++..+++ +|+.+.+|+|||++|||+||+++||+|+|+|+|.|+++|+|||||+++.+ ++||+|
T Consensus 46 ~~~~~~~~~L~~~~~~~~~~~G~~~~~~~~NG~~PGPtIr~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~--~~DG~p-- 121 (481)
T 3zx1_A 46 KEKNIFHATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPP--DQDGSP-- 121 (481)
T ss_dssp CSTTEEEEEEEEEEEEECCSTTCCEEEEEETTBSSCCBEEEETTCEEEEEEEECSSSCBCCEEETCCCCG--GGSCCT--
T ss_pred cCCCeEEEEEEEEEEEEEccCCcEEEEEEECCCCCCceEEEECCcEEEEEEEeCCCCCeeEEecCcccCC--ccCCCc--
Confidence 4568899999999999996 68899999999999999999999999999999999999999999999864 499996
Q ss_pred cccccCCCCeEEEEEEEcCC-CCceeeecCcch----hc-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHH
Q 008090 108 TQCPIQTGQSYTYNFTITGQ-RGTLLWHAHISW----LR-STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEA 181 (578)
Q Consensus 108 ~q~~i~pG~~~~y~f~~~~~-~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~ 181 (578)
||+|+||++++|+|+++++ +||||||||.++ |. +||+|+|||+++.+...++ ++++ ++++||+.+...+
T Consensus 122 -q~~I~PG~s~~Y~f~~~~~~~GT~WYH~H~~~~t~~q~~~GL~G~lIV~~~~~~~~~~---~~~~-l~l~D~~~~~~g~ 196 (481)
T 3zx1_A 122 -HDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHL---KEKD-LMISDLRLDENAQ 196 (481)
T ss_dssp -TSCBCTTCEEEEEEECCTTCCEEEEEECCCTTTHHHHHHTTCCEEEEEECSSCTTTTS---EEEE-EEEEEECCBTTSC
T ss_pred -cCcCCCCCeEEEEEeCCCCCCceEEEeecCCCcchhhhhccceEEEEEcCccccccCC---Ccee-EEEEEEeccCCCc
Confidence 8999999999999998543 799999999853 44 8999999999987644332 4455 9999998765432
Q ss_pred HHH---HHHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCc
Q 008090 182 IIS---QALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVY 258 (578)
Q Consensus 182 ~~~---~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~ 258 (578)
+.. .....| ..++.++|||+.+ +.++|++|+ ||||||+|+.+.+.|+|+||+|+||++||.+
T Consensus 197 ~~~~~~~~~~~g---~~gd~~lvNG~~~----------p~l~v~~g~--RlRliNa~~~~~~~l~i~g~~~~vIa~DGg~ 261 (481)
T 3zx1_A 197 IPNNNLNDWLNG---REGEFVLINGQFK----------PKIKLATNE--RIRIYNATAARYLNLRIQGAKFILVGTDGGL 261 (481)
T ss_dssp CCCCCHHHHHHC---CCCSEEEETTEES----------CEEEEETTE--EEEEEECCSSCCEEEEETTCEEEEEEETTEE
T ss_pred cccccchhhccC---CcCCEEEECCccC----------ceEEecCCC--EEEEEecCCCeEEEEEECCCceEEEEcCCCc
Confidence 210 001112 3468999999975 579999998 9999999999999999999999999999887
Q ss_pred c-cceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCC-CCcceEEEEEEeCCCCCCcCccccCCCCCCCC
Q 008090 259 V-KPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTI-DNSTTAGILEYKHPSNHSISSKKLQLYKPTLP 336 (578)
Q Consensus 259 v-~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~-~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~ 336 (578)
+ +|+.++++.|+|||||||+|++++. +.|.|.+.......... .......++++..... ... +|
T Consensus 262 ~~~P~~~~~l~l~pgeR~dvlv~~~~~---~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~----lP 327 (481)
T 3zx1_A 262 IEKTIYKEELFLSPASRVEVLIDAPKD---GNFKLESAYYDRDKMMVKEEPNTLFLANINLKKE-------NVE----LP 327 (481)
T ss_dssp EEEEEEESSEEECTTCEEEEEEECSSC---EEEEEEECCCCCCCSSCCCCCCCEEEEEEEEECC-------CCC----CC
T ss_pred cCCceEeCeEEECCccEEEEEEEcCCC---cEEEEEEecccccCccccCCCCceeEEEEecCCC-------Ccc----CC
Confidence 6 8999999999999999999999875 88999986543311100 1122344444443211 001 11
Q ss_pred CCCCcccccccccccccccCCCCCCCCCcccceEEEEEecCCCCCCCCCCcccCCCCCe-------eEeeecceeeecCc
Q 008090 337 SINDTSFAVNFTRKFRSLASVKYPANVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTK-------FSASVNNVSFVLPS 409 (578)
Q Consensus 337 ~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-------~~~~in~~s~~~p~ 409 (578)
. .+..+ +........+++.++....... .+. ..+.. ..|++||+.|..
T Consensus 328 ~------------~l~~~-----~~~~~~~~~r~~~l~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~iNG~~~~~-- 382 (481)
T 3zx1_A 328 K------------NLKIF-----KPSEEPKEFKEIIMSEDHMQMH-----GMM-GKSEGELKIALASMFLINRKSYDL-- 382 (481)
T ss_dssp S------------CSCCC-----CCCCCCCEEEEEEEEECCSTTT-----TGG-GCCHHHHHHHHHTTEEETTBCCCT--
T ss_pred c------------cccCC-----CCCCCCCcEEEEEEeccchhcc-----ccc-ccccccccccccceeEECCEeCCC--
Confidence 1 01111 0001111344454443221000 000 00000 126677654410
Q ss_pred chhhhhhhcCCCCCcccCCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceE
Q 008090 410 TAILQSYFFGQNNGVYTTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFF 489 (578)
Q Consensus 410 ~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~ 489 (578)
....+.++.|++|+|+|.|.+ .+.|||||||+.|+
T Consensus 383 ------------------------------------------~~~~~~~~~G~~v~w~l~N~~---~~~Hp~HlHG~~F~ 417 (481)
T 3zx1_A 383 ------------------------------------------KRIDLSSKLGVVEDWIVINKS---HMDHPFHIHGTQFE 417 (481)
T ss_dssp ------------------------------------------TCCCEEEETTCCEEEEEEECS---SSCEEEEETTCCEE
T ss_pred ------------------------------------------CCceEEeCCCCEEEEEEEcCC---CCceeEEEeccEEE
Confidence 123457889999999999954 58999999999999
Q ss_pred EEEe--cCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEe
Q 008090 490 VVGL--GFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 490 Vv~~--g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
|+++ +.. .....++.|||||.|+|+++++|+|+|||||.|+|||||++|+|.|||+.|+|.
T Consensus 418 vl~~~~~g~---------~~~~~~~~~kDTv~v~Pg~~~~i~~~~d~pG~w~~HCHil~H~d~GMm~~~~V~ 480 (481)
T 3zx1_A 418 LISSKLNGK---------VQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVK 480 (481)
T ss_dssp EEEEEETTE---------EEECSSCCEESEEEECTTCEEEEEECCCSCEEEEEEESSHHHHHTTCEEEEEEE
T ss_pred EEEecccCC---------CCCcccCcccceEEECCCCEEEEEEEcCCCeeEEEEcCChHHHhcCCceEEEEe
Confidence 9998 321 122345789999999999999999999999999999999999999999999996
No 14
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=100.00 E-value=6.6e-77 Score=635.13 Aligned_cols=392 Identities=18% Similarity=0.315 Sum_probs=299.0
Q ss_pred eEEEEEEEEEEeeecCceeeeEEEECCC-CCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccc
Q 008090 33 TRHYTFNIKYHNVTRLCHTRNIISVNGQ-FPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCP 111 (578)
Q Consensus 33 ~~~~~l~~~~~~~~~~g~~~~~~~~Ng~-~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~ 111 (578)
.+.|+|++ |+|||+ +|||+|++++||+|+|+|+|.|+++|+|||||+++.. ++||+|+ |+
T Consensus 20 ~~~~~l~~--------------~~~Ng~~~pGP~i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~--~~DG~~~---~~ 80 (448)
T 3aw5_A 20 ATYIEATA--------------SGYMAEGVLNPTIILRRGQRVDMTLKNKLTEPTIVHWHGFDVNW--HNDAHPS---FA 80 (448)
T ss_dssp CSEEEEET--------------TEEEETTEESCEEEEETTCEEEEEEEECSSSCBCEEEETCCCCH--HHHTCGG---GC
T ss_pred CcEEEEEE--------------EEECCccccCceEEEeCCCEEEEEEEECCCCceeEEeCCccCCC--ccCCCCC---cc
Confidence 55677777 999999 9999999999999999999999999999999999875 4999987 99
Q ss_pred cCCCCeEEEEEEEcCCCCceeeecCc----chhc-ccceeeEEEeCCCCCCCCCCCCC-CcEeEEeeecccCChHHHHH-
Q 008090 112 IQTGQSYTYNFTITGQRGTLLWHAHI----SWLR-STLYGPIIILPKRNESYPFQKPH-KEIPILFGEWFNVDPEAIIS- 184 (578)
Q Consensus 112 i~pG~~~~y~f~~~~~~Gt~wYH~H~----~~~~-~Gl~G~liV~~~~~~~~p~~~~~-~e~~l~~~d~~~~~~~~~~~- 184 (578)
|.||++++|+|++++++||||||||. ..|. +||+|+|||+++.+. .+++ ++ +|++|+++||+++. .++..
T Consensus 81 i~PG~~~~Y~f~~~~~~GT~wYH~H~~~~~~~q~~~Gl~G~liV~~~~~~-~~l~-~d~~e~~l~l~D~~~~~-~~~~~~ 157 (448)
T 3aw5_A 81 ITPGESYNYSFDVVNRAGTYLYHPHPHGLTAKQFYMGQLGLVIVEDSGSD-LGFK-YGVNDLPLVISDRRFIG-GAPVYN 157 (448)
T ss_dssp BCTTCEEEEEEECCSCSEEEEEEECCTTTHHHHHHTTCCEEEEEECTTTT-TTCC-BTTTEEEEEEEEEEEET-TEEECC
T ss_pred CCCCCEEEEEEEcCCCCCceEeccCCCCchHHHHhccceEEEEEeCCccc-cCCC-CCCceEEEEEEeeccCC-Cccccc
Confidence 99999999999986589999999994 4455 899999999998764 3332 45 89999999998876 33211
Q ss_pred ---HHHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEE--cC---ceEEEEeecC
Q 008090 185 ---QALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSI--AN---HTLTVVEADA 256 (578)
Q Consensus 185 ---~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l--~g---h~~~via~DG 256 (578)
..... +..+++++|||+.+ +.++|++| +|||||||+|+.+.+.|+| +| |+|+||++||
T Consensus 158 ~~~~~~~~---~~~~~~~liNG~~~----------p~~~v~~g-~~RlRliNa~~~~~~~~~i~~~~~~~~~~~via~DG 223 (448)
T 3aw5_A 158 PTPMEMIA---GFLGNAVLVNGVKD----------AVFKLSGG-SYRLRLVNGSNARLYMLSIVKKNGDVVPMRLIAVDQ 223 (448)
T ss_dssp CCHHHHHH---CCCCSEEEETTEET----------CEEEEEEE-EEEEEEEECSSSCCEEEEEEETTSCEECEEEEEETT
T ss_pred cccccccc---CccccEEEECCccc----------ceEEECCC-eEEEEEEcCCCcceEEEEEEcCCCCCccEEEEEeCC
Confidence 00111 23568999999975 67999999 9999999999999999999 99 9999999999
Q ss_pred Cccc-ceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCC----------CCCCcceEEEEEEeCCCCCCcCc
Q 008090 257 VYVK-PFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMG----------TIDNSTTAGILEYKHPSNHSISS 325 (578)
Q Consensus 257 ~~v~-P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~----------~~~~~~~~ail~y~~~~~~~~~~ 325 (578)
++++ |+.++++.|+|||||||+|+++ . +.|+|++.....+.+ ........++++|.++.. .
T Consensus 224 ~~~~~P~~~~~l~l~pgeR~dvlv~~~-~---~~y~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 295 (448)
T 3aw5_A 224 GFLARPIEVRALFLAPAERAEVVVELG-E---GVYLLKNTPFDPMHLEMGHGMQEALPEGSEYTIATFLVEGKGE----A 295 (448)
T ss_dssp EEEEEEEEESCEEECTTCEEEEEEEEC-S---EEEEEEECCCCCCCCTTSSCCCCSSCTTSCEEEEEEEEEEECC----C
T ss_pred CccCCceEeceEEECCcceEEEEEECC-C---CceEEEccccccccCccccccccccCCCCCceEEEEEEcCCCC----C
Confidence 9996 9999999999999999999998 2 789999986543211 011234567788865422 0
Q ss_pred cccCCCCCCCCCCCCcccccccccccccccCCCCCCCCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceee
Q 008090 326 KKLQLYKPTLPSINDTSFAVNFTRKFRSLASVKYPANVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSF 405 (578)
Q Consensus 326 ~~~~~~~p~~~~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~ 405 (578)
..+.. |..+.. ...+...++++.++.+ ...|++||++|
T Consensus 296 ~~p~~--------------------L~~lp~----~~~~~~~~~~~~l~~~------------------~~~~~iNg~~~ 333 (448)
T 3aw5_A 296 VPVEA--------------------LSDPPP----EPPKPTRTRRFALSLS------------------GMQWTINGMFW 333 (448)
T ss_dssp CCCCC--------------------CSCCCC----CCCCCSEEEEEEEEEE------------------TTEEEETTBCC
T ss_pred CCccc--------------------cCCCCC----CCCCCCceEEEEEeCC------------------CceeeECCCcC
Confidence 00000 111100 0122334555555432 12489999877
Q ss_pred ecCcchhhhhhhcCCCCCcccCCCCCCCCCCCCCCCCCCCCCccCCCeeeEe-ecCCCEEEEEEeeCCCCCCCCCCcccc
Q 008090 406 VLPSTAILQSYFFGQNNGVYTTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVL-LPFNTSVELVMQDTSILGAESHPLHLH 484 (578)
Q Consensus 406 ~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~v~~~l~N~~~~~~~~HP~HlH 484 (578)
..++ | .+. ++.|++|+|+|+|.+ ..+.||||||
T Consensus 334 ~~~~------------------------p--------------------~~~~~~~g~~v~~~i~N~~--~~~~HP~HLH 367 (448)
T 3aw5_A 334 NASN------------------------P--------------------LFEHVSVEGVELWEIVNDK--ASMPHPMHLH 367 (448)
T ss_dssp CTTC------------------------T--------------------TCCCEEECEEEEEEEEECS--SSCCEEEEES
T ss_pred CCCC------------------------C--------------------ceeccCCCCeEEEEEEcCC--CCCCcCEEEC
Confidence 4321 1 123 577999999999964 1489999999
Q ss_pred CCceEEEEecCCCCCCCCCCCCC----CCCCCCcceeeeeCCCcEEEEE--EE---ccCceeeEEeeechhhhhccceEE
Q 008090 485 GFNFFVVGLGFGNYDPDKDLMNF----NLVDPMERNTIGVPAGGWVAIR--FF---ADNPGVWFMHCHLDVHTSWGLRMA 555 (578)
Q Consensus 485 G~~F~Vv~~g~g~~~~~~~~~~~----~~~~p~~rDTv~vpp~g~v~ir--f~---adnpG~wl~HCHil~H~d~GM~~~ 555 (578)
||+||||+++ |.+........+ +..++.|||||.|+|+++++|+ |+ +||| |+|||||++|||.|||++
T Consensus 368 G~~F~Vl~~~-G~~~~~~~~~~~~~~~~p~~~~~rDTv~v~pg~~~~i~vrF~~~~adnp--w~~HCHil~H~d~GMm~~ 444 (448)
T 3aw5_A 368 GFPMWIIERK-DSPRQVAELAVDNRGRLPTDLGLKDTVLIWPGETVKIVVNFDAKKRGQL--FPFHCHNLEHEDGGMMIN 444 (448)
T ss_dssp SSCBEEEEEE-SCCHHHHTTCCSTTCCCGGGGSCBSEEEECTTCEEEEEEEECGGGTTCE--EEEEESSHHHHHTTCEEE
T ss_pred CceEEEEEec-CCCcccccccccccCCCccccCCccEEEeCCCCEEEEEEEecccCCCCc--EEEEcCChHHHhCCCceE
Confidence 9999999985 333211111112 2345579999999999999665 98 8999 999999999999999999
Q ss_pred EEEe
Q 008090 556 WIVQ 559 (578)
Q Consensus 556 ~~V~ 559 (578)
|+|.
T Consensus 445 ~~V~ 448 (448)
T 3aw5_A 445 IAVK 448 (448)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9883
No 15
>3gyr_A PHS, phenoxazinone synthase; metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis; 2.30A {Streptomyces antibioticus}
Probab=100.00 E-value=3.2e-76 Score=658.96 Aligned_cols=461 Identities=18% Similarity=0.223 Sum_probs=303.6
Q ss_pred eeEEEEEEEEEEeeec--CceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCc------------------------
Q 008090 32 ITRHYTFNIKYHNVTR--LCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNN------------------------ 85 (578)
Q Consensus 32 ~~~~~~l~~~~~~~~~--~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~------------------------ 85 (578)
..+.|+|++++...++ ++....+|+|||++|||+|+|++||+|+|+|+|+|+.+
T Consensus 31 ~~~~~~i~~~~~~~~~~~~~~~t~~~gyNg~~PGPti~~~~Gd~v~v~~~N~L~~~~~~h~hg~~~~~~~~~~~~~~~~~ 110 (612)
T 3gyr_A 31 VTRETEIALRPTWVRLHPQLPPTLMWGYDGQVPGPTIEVRRGQRVRIAWTNRIPKGSEYPVTSVEVPLGPPGTPAPNTEP 110 (612)
T ss_dssp TTBCEEEEEEEEEECSCTTSCCEEEEEETTBSSCCEEEEETTCCEEEEEEECCCTTCCCSEEEEEECCCSTTSCCGGGSC
T ss_pred CcceEEEEEEEEEEeecCCCCcceEEEECCcccCcEEEEeCCcEEEEEEEECCCCCcccccccccccCCCCCCccccccc
Confidence 4567999999887665 44678899999999999999999999999999999654
Q ss_pred -----------------eeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCcch----hc-cc
Q 008090 86 -----------------VTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISW----LR-ST 143 (578)
Q Consensus 86 -----------------~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~----~~-~G 143 (578)
|+|||||+++.+ ++||+ +||+|.||++|+|+|++.+++||||||+|.++ |. +|
T Consensus 111 ~~~~~~~~~~~~~~~~~ttiHwHGl~~~~--~~DGv---~q~~I~PG~~~~Y~f~~~q~~GT~WYHsH~~g~t~~q~~~G 185 (612)
T 3gyr_A 111 GRGGVEPNKDVAALPAWSVTHLHGAQTGG--GNDGW---ADNAVGFGDAQLSEYPNDHQATQWWYHDHAMNITRWNVMAG 185 (612)
T ss_dssp SCTTCCCCHHHHTCCCCBCEEEETCCCCT--TTSCC---GGGCBCTTCEEEEEECCCSCSEEEEEEECCTTTHHHHTTTT
T ss_pred cccccccccccccCCCCceEEcCCCccCC--cccCc---ccCccCCCCCEEEEEEcCCCCceEEEeeCCCCcchhhhhcc
Confidence 667788877654 37887 48999999999999998667899999999854 44 89
Q ss_pred ceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHHHHHHHH-------------h---cCCCCCCCceEEEcCccCC
Q 008090 144 LYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEAIISQAL-------------Q---TGAGPNVSDAYTINGLPGP 207 (578)
Q Consensus 144 l~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~~~~~~~-------------~---~g~~~~~~~~~liNG~~~~ 207 (578)
|+|+|||+++.+...+++.+++|++|+|+||+++...+...... . ....+..++.++|||+.+
T Consensus 186 l~G~liI~d~~~~~~~~p~~d~e~~lvl~Dw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~vNG~~~- 264 (612)
T 3gyr_A 186 LYGTYLVRDDEEDALGLPSGDREIPLLIADRNLDTDEDGRLNGRLLHKTVIVQQSNPETGKPVSIPFFGPYTTVNGRIW- 264 (612)
T ss_dssp CEEEEEEECHHHHTTTCCCGGGEEEEEEEEECEEECTTSCEEEEEEEEEEEEESSCSSSSCCEECCCCCSEEEETTEES-
T ss_pred ceeEEEEcCccccccCCCCCCccEEEEEEEEecccccccccccccccCCccccccCCCCCCccccCccCceeeecCCcc-
Confidence 99999999987766666678999999999997654322110000 0 001233568899999976
Q ss_pred CcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCc-------eEEEEeecCCcc-cceEe------cEEEeCCCc
Q 008090 208 LYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANH-------TLTVVEADAVYV-KPFDT------DKLLITPGQ 273 (578)
Q Consensus 208 ~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh-------~~~via~DG~~v-~P~~~------d~v~l~pge 273 (578)
+.+.++. ++|||||||+|+.+.+.|+|++| +|+|||+||.++ +|+.+ ++|.|+|||
T Consensus 265 ---------p~~~v~~-~~yRlRliNas~~~~~~l~i~~h~~~~~~~~~~vIa~DG~~l~~Pv~v~~p~~~~~l~i~pGe 334 (612)
T 3gyr_A 265 ---------PYADVDD-GWYRLRLVNASNARIYNLVLIDEDDRPVPGVVHQIGSDGGLLPRPVPVDFDDTLPVLSAAPAE 334 (612)
T ss_dssp ---------CEEEEES-SEEEEEEEECCSSCCEEEEEECTTSCBCTTSEEEEEETTEEEEEEEEECSSSSSSSEEECTTC
T ss_pred ---------ceEeccC-cEEEEEEEeccCCcceeEEEccCCCccCCceEEEEEeCCCccccceeccCcccccEEEeccce
Confidence 5677775 58999999999999999999998 499999999988 56655 489999999
Q ss_pred eEEEEEEcCCCCCCCceEEEEeecCCCC-C---CCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCccccccccc
Q 008090 274 TANVLLRTKPYFPNATFFMQARPYFSGM-G---TIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDTSFAVNFTR 349 (578)
Q Consensus 274 R~dv~v~~~~~~~~g~y~l~~~~~~~~~-~---~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 349 (578)
||||+|++++.. |.++.......... . .........+++|..... ....... ++......
T Consensus 335 RydVlV~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~p~~~~~~------- 398 (612)
T 3gyr_A 335 RFDLLVDFRALG--GRRLRLVDKGPGAPAGTPDPLGGVRYPEVMEFRVRET---CEEDSFA----LPEVLSGS------- 398 (612)
T ss_dssp EEEEEEECTTCT--TCEEEEEECCTTSCTTSCBGGGTBSCCEEEEEEEECC---SCCCCCC----CCSSCCSS-------
T ss_pred EEEEEEECCCCC--ceEEEEEecCCcCCcCccCccccccccceeeecccCC---CCCCccc----cccccccc-------
Confidence 999999999874 55443333211111 1 112234456667665432 0000111 11110000
Q ss_pred ccccccCCCCCCCCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeeccee----eecCcchhhhhhhcCCCCCcc
Q 008090 350 KFRSLASVKYPANVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVS----FVLPSTAILQSYFFGQNNGVY 425 (578)
Q Consensus 350 ~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s----~~~p~~~~l~~~~~~~~~g~~ 425 (578)
... .....+. ..+.......... ........+.+.... +..+....+..
T Consensus 399 -~~~-----~~~~~~~-~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 451 (612)
T 3gyr_A 399 -FRR-----MSHDIPH-GHRLIVLTPPGTK----------GSGGHPEIWEMAEVEDPADVQVPAEGVIQV---------- 451 (612)
T ss_dssp -CCC-----CCTTSCC-EEEEEEEECTTCT----------TTTTCCEEEEEEECC-----CCSCTTEEEE----------
T ss_pred -ccc-----ccccccc-ccccccccccccc----------cccccccccccccccccccccccccceeee----------
Confidence 000 0000000 0111111110000 000011111111110 00010000000
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCC---
Q 008090 426 TTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDK--- 502 (578)
Q Consensus 426 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~--- 502 (578)
...+..+..+..++ ........+.++.|++|+|+|+|.+ .+.||||||||+||||+++.+.++...
T Consensus 452 --~~~~~~~~~~~~n~------~~~~~~~~~~~~~g~~~~w~i~N~~---~~~HP~HLHG~~F~Vl~~~g~~~~~~~~~~ 520 (612)
T 3gyr_A 452 --TGADGRTKTYRRTA------RTFNDGLGFTIGEGTHEQWTFLNLS---PILHPMHIHLADFQVLGRDAYDASGFDLAL 520 (612)
T ss_dssp --ECTTSCEEEEEEEE------CSTTSCCCEEEETTCEEEEEEEECS---SSCEEEEESSCEEEEEEEEEEECTTEETTT
T ss_pred --ccCCCccccccccC------ccCCCCcceEeCCCCEEEEEEEcCC---CCCcCEeECCCcEEEEeecCCcCccccccc
Confidence 00000000111111 0112345678899999999999965 589999999999999998643322110
Q ss_pred ------------CCCCCCCCCCCcceeeeeCCCcEEEEEEE-ccCceeeEEeeechhhhhccceEEEEEecCC
Q 008090 503 ------------DLMNFNLVDPMERNTIGVPAGGWVAIRFF-ADNPGVWFMHCHLDVHTSWGLRMAWIVQNGA 562 (578)
Q Consensus 503 ------------~~~~~~~~~p~~rDTv~vpp~g~v~irf~-adnpG~wl~HCHil~H~d~GM~~~~~V~~~~ 562 (578)
.....+..++.|||||.|+++++++|||+ +||||.|||||||++|||.|||+.|+|.+++
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~kDTv~v~~~~~v~i~~rfadnpG~w~~HCHil~Hed~GMM~~f~V~~p~ 593 (612)
T 3gyr_A 521 GGTRTPVRLDPDTPVPLAPNELGHKDVFQVPGPQGLRVMGKFDGAYGRFMYHCHLLEHEDMGMMRPFVVMPPE 593 (612)
T ss_dssp TEESSCEEEEEEEECCCCTTCSSCBSEEEECSSEEEEEEEECCSCCEEEEEEESSHHHHHTTCEEEEEEECHH
T ss_pred cccccccccccccccCcccccCCCCcEEEECCCCEEEEEEEeCCCCcceEEcCCChHHHhCcCCcceEEeCCc
Confidence 11234667889999999999999999998 7999999999999999999999999998764
No 16
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...
Probab=100.00 E-value=2.2e-75 Score=623.90 Aligned_cols=428 Identities=19% Similarity=0.236 Sum_probs=304.4
Q ss_pred eeEEEEEEEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccc
Q 008090 32 ITRHYTFNIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCP 111 (578)
Q Consensus 32 ~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~ 111 (578)
..+.|+|++++..++++|+.+.+|+|||++|||+|++++||+|+|+|+|.|+.+|+|||||+++... +||+| ||+
T Consensus 16 ~~~~~~l~~~~~~~~~~G~~~~~~~~NG~~pGP~i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~--~DG~p---~~~ 90 (488)
T 3od3_A 16 ARNRIQLTIGAGQSTFGGKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGE--VDGGP---QGI 90 (488)
T ss_dssp TTSEEEEEEEEEEEEETTEEEEEEEESSSSBCCEEEEETTCEEEEEEEECSSSCBCCEEETCCCCHH--HHCCT---TCC
T ss_pred CCeeEEEEEEEEEEccCCeEEEEEEECCcCCCCeEEEeCCeEEEEEEEeCCcCceeEeecccccCcc--cCCCC---cCc
Confidence 4577999999999999999999999999999999999999999999999999999999999998764 99996 899
Q ss_pred cCCCCeEEEEEEEcCCCCceeeecCcch----hc-ccceeeEEEeCCCCCCCCCCC--CCCcEeEEeeecccCChHHHHH
Q 008090 112 IQTGQSYTYNFTITGQRGTLLWHAHISW----LR-STLYGPIIILPKRNESYPFQK--PHKEIPILFGEWFNVDPEAIIS 184 (578)
Q Consensus 112 i~pG~~~~y~f~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~p~~~--~~~e~~l~~~d~~~~~~~~~~~ 184 (578)
|.||++++|+|++.+++||||||||.++ +. +||+|+|||+++.+...+++. ..+|++++++||+.+...++..
T Consensus 91 i~PG~~~~Y~f~~~~~aGT~wYH~H~~~~t~~q~~~GL~G~liV~~~~~~~~~lp~~y~~~d~~lvl~D~~~~~~g~~~~ 170 (488)
T 3od3_A 91 IPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIVQDKKFSADGQIDY 170 (488)
T ss_dssp BCTTCEEEEEEECCSCSEEEEEECCCTTTHHHHHHTTCCEEEEEECHHHHTTCCCCCBTTTEEEEEEEEECBCTTSSBCC
T ss_pred CcCCCeEEEEEecCCCceeEEEEecCCCcchhhhhccceeEEEEcCccccccCCcccCCccceeEEEEEeeecCCCceec
Confidence 9999999999998556899999999854 33 899999999987654433332 2469999999998865432110
Q ss_pred H-HHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEE-cCceEEEEeecCCcc-cc
Q 008090 185 Q-ALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSI-ANHTLTVVEADAVYV-KP 261 (578)
Q Consensus 185 ~-~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l-~gh~~~via~DG~~v-~P 261 (578)
. .......+..++.++|||+.+ |.+.+ +|++|||||||+|+.+.+.|+| +||+|+||++||+++ +|
T Consensus 171 ~~~~~~~~~g~~gd~~lvNG~~~----------p~~~v-~g~~~RlRliNas~~~~~~l~i~dg~~~~vIa~DG~~l~~P 239 (488)
T 3od3_A 171 QLDVMTAAVGWFGDTLLTNGAIY----------PQHAA-PRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEP 239 (488)
T ss_dssp CCSHHHHHHCCCCSEEEETTBSS----------CEEEE-EEEEEEEEEEECCSSCCEEEEETTCCCEEEEEETTEEEEEE
T ss_pred cccccccccCCCCCEEEEcCCcC----------ccEec-CCCEEEEEEEccCCCceeeeeecCCCeEEEEEeCCCcccCc
Confidence 0 000000123568999999976 33554 5789999999999999999999 699999999999987 89
Q ss_pred eEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCC-CCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCC
Q 008090 262 FDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGT-IDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSIND 340 (578)
Q Consensus 262 ~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~-~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~ 340 (578)
+.+++|.|+|||||||+|++++. +.|.+++......... ........+++...... .....+ |..
T Consensus 240 ~~~~~l~l~pGeR~dvlv~~~~~---~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~----P~~-- 305 (488)
T 3od3_A 240 VKVSELPVLMGERFEVLVEVNDN---KPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAI-----SASGAL----PDT-- 305 (488)
T ss_dssp EEESCEEECTTCEEEEEEEECTT---CCEEEEECCCSSTTTTSTTTTSCEEEEEEEEEEE-----ECCCCC----CSC--
T ss_pred cEeceEEECCCCEEEEEEEeCCC---ceEEEEEeccCCCCcccccccCccceeEeccccc-----CCCCCC----Ccc--
Confidence 99999999999999999999875 8899987653321100 01111223333332111 000111 110
Q ss_pred cccccccccccccccCCCCCCCCCcccceEEEEEecC----------------CCCCCCC---------CCccc-CCCCC
Q 008090 341 TSFAVNFTRKFRSLASVKYPANVPQIVDRKFFFTVGL----------------GSNPCPK---------NTTCQ-GPNGT 394 (578)
Q Consensus 341 ~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~----------------~~~~~~~---------~~~~~-~~~g~ 394 (578)
|..+. ..+ .+.....+++.+.+.. ....... +..+. ...|.
T Consensus 306 ----------L~~~~--~~~-~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 372 (488)
T 3od3_A 306 ----------LSSLP--ALP-SLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGNMNHMNHGG 372 (488)
T ss_dssp ----------CCCCC--CCC-CCTTCCEEEEEEEECHHHHHHHHHHHHHHHGGGGGTTSCHHHHCCCSCCCCCCCSCCCG
T ss_pred ----------cccCC--CCc-ccccccceEEEEEecccccccccccccccccccccccccccccccccccCccccccccc
Confidence 00000 000 0111234555554320 0000000 00000 00111
Q ss_pred ee----EeeecceeeecCcchhhhhhhcCCCCCcccCCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEee
Q 008090 395 KF----SASVNNVSFVLPSTAILQSYFFGQNNGVYTTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQD 470 (578)
Q Consensus 395 ~~----~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N 470 (578)
.+ .|.|||++|... ...+.++.|++|+|.|.|
T Consensus 373 ~~~~~~~~~ING~~~~~~--------------------------------------------~~~~~~~~G~~e~w~l~N 408 (488)
T 3od3_A 373 KFDFHHANKINGQAFDMN--------------------------------------------KPMFAAAKGQYERWVISG 408 (488)
T ss_dssp GGCGGGCEEETTBCCCTT--------------------------------------------CCSEECCBSSCEEEEEEC
T ss_pred cccccceeeECCeeCCCC--------------------------------------------CCceEcCCCCEEEEEEEe
Confidence 11 256777655211 123567889999999999
Q ss_pred CCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEcc----CceeeEEeeechh
Q 008090 471 TSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFAD----NPGVWFMHCHLDV 546 (578)
Q Consensus 471 ~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad----npG~wl~HCHil~ 546 (578)
.+. .+.|||||||++|+|++++... ....++.|||||.|+ |+++.|+|+++ +||.||||||+++
T Consensus 409 ~~~--~~~Hp~HlHg~~F~Vl~~~g~~---------~~~~~~~~kDTV~v~-g~~~~i~~~f~~~~~~~G~~m~HCH~l~ 476 (488)
T 3od3_A 409 VGD--MMLHPFHIHGTQFRILSENGKP---------PAAHRAGWKDTVKVE-GNVSEVLVKFNHDAPKEHAYMAHCHLLE 476 (488)
T ss_dssp TTC--CCCEEEEETTCCBEEEEBTTBC---------CCGGGSSSBSEEEES-SSEEEEEECBCSCCCGGGCEEEEESSHH
T ss_pred CCC--CCCccEEEcCceEEEeccCCCc---------cccccCCceeEEEeC-CCEEEEEEEeccCCCCCCCEEEeCCchH
Confidence 652 4799999999999999985321 122346799999999 99999999984 5689999999999
Q ss_pred hhhccceEEEEE
Q 008090 547 HTSWGLRMAWIV 558 (578)
Q Consensus 547 H~d~GM~~~~~V 558 (578)
|||.|||+.|+|
T Consensus 477 Hed~GMm~~f~V 488 (488)
T 3od3_A 477 HEDTGMMLGFTV 488 (488)
T ss_dssp HHHTTCEEEEEC
T ss_pred HHhcCCcEEEEC
Confidence 999999999986
No 17
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase, multicopper oxidase, hexamer; 2.30A {Streptomyces antibioticus} PDB: 3gyr_A
Probab=100.00 E-value=1.3e-73 Score=624.97 Aligned_cols=458 Identities=19% Similarity=0.253 Sum_probs=312.0
Q ss_pred eeEEEEEEEEEEeeecC--ceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCc------------------------
Q 008090 32 ITRHYTFNIKYHNVTRL--CHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNN------------------------ 85 (578)
Q Consensus 32 ~~~~~~l~~~~~~~~~~--g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~------------------------ 85 (578)
..++|+|++++..+.+. +..+.+|+|||++|||+|+|++||+|+|+++|+|+..
T Consensus 31 ~~~~~~l~~~~~~~~l~~~~~~t~~~~ynG~~PGPtI~~~~Gd~v~V~~~N~L~~~~~~~~~~~~~p~~~~g~p~~~~~p 110 (612)
T 2g23_A 31 VTRETEIALRPTWVRLHPQLPPTLMWGYDGQVPGPTIEVRRGQRVRIAWTNRIPKGSEYPVTSVEVPLGPPGTPAPNTEP 110 (612)
T ss_dssp TTBCEEEEEEEEEECSCTTSCCEEEEEETTBSSCCEEEEETTCCEEEEEEECCCTTCCCSEEEEEECCCSTTSCCGGGSC
T ss_pred CeEEEEEEEEEEEEEECCCCcceEEEEECCccCCceEEEECCeEeeEEEEECcCCcccccccccccccccCCCccccccc
Confidence 46789999999987754 3589999999999999999999999999999999742
Q ss_pred -----------------eeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCcch----hc-cc
Q 008090 86 -----------------VTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISW----LR-ST 143 (578)
Q Consensus 86 -----------------~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~----~~-~G 143 (578)
|++||||+++... +||+| ||+|.||++++|+|++.+++||||||||.++ +. +|
T Consensus 111 ~~~g~~~~~~~~~~~~~tsiH~HG~~~~~~--~DG~p---~~~i~PG~s~~Y~f~~~~~aGT~wYH~H~~~~t~~q~~~G 185 (612)
T 2g23_A 111 GRGGVEPNKDVAALPAWSVTHLHGAQTGGG--NDGWA---DNAVGFGDAQLSEYPNDHQATQWWYHDHAMNITRWNVMAG 185 (612)
T ss_dssp SCTTCCCCHHHHTCCCCBCEEEETCCCCTT--TSCCG---GGCBCTTCEEEEEECCCSCSCEEEEEECCTTTHHHHTTTT
T ss_pred ccccccccccccccCCceEEEcCCCCCCCc--cCCCC---cCCCCCCCeEEEEEEecCCCceEEEecccCCcchhhhhcc
Confidence 8999999998866 89985 8999999999999998668999999999976 44 89
Q ss_pred ceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHH-HHHH-H------Hh----cCC----CCCCCceEEEcCccCC
Q 008090 144 LYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEA-IISQ-A------LQ----TGA----GPNVSDAYTINGLPGP 207 (578)
Q Consensus 144 l~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~-~~~~-~------~~----~g~----~~~~~~~~liNG~~~~ 207 (578)
|+|+|||+++.+...+++.+++|++|+++||+++...+ .+.. . .. .++ .+..++.++|||+.+
T Consensus 186 L~G~liV~~~~~~~~~lp~~d~d~~l~l~Dw~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~p~~~~~~gd~~lVNG~~~- 264 (612)
T 2g23_A 186 LYGTYLVRDDEEDALGLPSGDREIPLLIADRNLDTDEDGRLNGRLLHKTVIVQQSNPETGKPVSIPFFGPYTTVNGRIW- 264 (612)
T ss_dssp CEEEEEEECHHHHTTTCCCGGGEEEEEEEEECEEECTTSCEEEEEEEEEEEEESSCSSSSCCEECCCCCSEEEETTEES-
T ss_pred ceeEEEEcCcccccccCCCCcceEEEEEEEEeccCCcccccccccccccccccccccccCcccccCCcCCEEEECCccC-
Confidence 99999999987655556678999999999998864321 0000 0 00 111 124579999999976
Q ss_pred CcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCc-------eEEEEeecCCcc-cceEec------EEEeCCCc
Q 008090 208 LYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANH-------TLTVVEADAVYV-KPFDTD------KLLITPGQ 273 (578)
Q Consensus 208 ~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh-------~~~via~DG~~v-~P~~~d------~v~l~pge 273 (578)
+.++|++| +|||||||+|+.+.+.|+|++| +|+|||+||+++ +|+.++ +|.|+|||
T Consensus 265 ---------p~~~V~~g-~yRlRliNas~~r~~~l~i~~h~g~~~~~~~~vIa~DG~~l~~P~~~~~~~~~~~l~l~pge 334 (612)
T 2g23_A 265 ---------PYADVDDG-WYRLRLVNASNARIYNLVLIDEDDRPVPGVVHQIGSDGGLLPRPVPVDFDDTLPVLSAAPAE 334 (612)
T ss_dssp ---------CEEEEESS-EEEEEEEECCSSCCEEEEEECTTSCBCTTSEEEEEETTEEEEEEEEECSSSSSSSEEECTTC
T ss_pred ---------CeEEecCC-eEEEEEEecCCCeEEEEEEcCCCCccCCCcEEEEEeCCeEccCCEEecccCcccEEEECCcC
Confidence 57999999 9999999999999999999999 899999999999 699999 99999999
Q ss_pred eEEEEEEcCCCCCCCceEEEEeecCCCCCCC---CCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCcccccccccc
Q 008090 274 TANVLLRTKPYFPNATFFMQARPYFSGMGTI---DNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDTSFAVNFTRK 350 (578)
Q Consensus 274 R~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~---~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 350 (578)
||||+|++++.+ |.+|.|+.......++.. .......++++..... .......+ |..
T Consensus 335 R~dvlVd~~~~~-g~~~~L~~~~~~~~~g~~~~~~~~~~~~vm~f~V~~~---~~~~~~~~----P~~------------ 394 (612)
T 2g23_A 335 RFDLLVDFRALG-GRRLRLVDKGPGAPAGTPDPLGGVRYPEVMEFRVRET---CEEDSFAL----PEV------------ 394 (612)
T ss_dssp EEEEEEECTTCT-TCEEEEEECCTTSCTTSCBGGGTBSCCEEEEEEEECC---SCCCCCCC----CSS------------
T ss_pred eEEEEEECCCCC-CCEEEEEeCCccCCCCccccccCccccceEEEEEccC---CCCCCCCC----Chh------------
Confidence 999999999864 467888876421111100 0111124555554322 00001111 110
Q ss_pred cccccCCCCCCCCCcccceEEEEEe---cCCCCCCCCCCcccCCCCCeeEeeecceeee----cCcchhhhhhhcCCCCC
Q 008090 351 FRSLASVKYPANVPQIVDRKFFFTV---GLGSNPCPKNTTCQGPNGTKFSASVNNVSFV----LPSTAILQSYFFGQNNG 423 (578)
Q Consensus 351 l~~l~~~~~p~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~----~p~~~~l~~~~~~~~~g 423 (578)
|.... ...+..++. .+++.+.. .... .+....|.++..... .|...+++... .+ |
T Consensus 395 L~~~~-~~l~~~~~~--~~r~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-g 456 (612)
T 2g23_A 395 LSGSF-RRMSHDIPH--GHRLIVLTPPGTKGS------------GGHPEIWEMAEVEDPADVQVPAEGVIQVTG--AD-G 456 (612)
T ss_dssp CCSSC-CCCCTTSCC--EEEEEEECCTTCTTS------------TTCCCEEEEEEEC-----CCSCTTEEEEEC--TT-S
T ss_pred hcccc-ccCCccccc--ceeEEeecccccccc------------ccccceeeccccccccccccccccceeeec--cC-C
Confidence 00000 000000110 11111110 0000 001112223221000 00000000000 00 0
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCC---CC
Q 008090 424 VYTTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNY---DP 500 (578)
Q Consensus 424 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~---~~ 500 (578)
. ...|.+++.. + .....+.++.|++|+|+|.|.+ .+.|||||||+.|+|++++...+ +.
T Consensus 457 ~---------~~~~~iNG~~-----~-~~~~~~~v~~G~~v~w~l~N~~---~~~HPiHlHg~~F~Vl~r~~~~~~~~~~ 518 (612)
T 2g23_A 457 R---------TKTYRRTAAT-----F-NDGLGFTIGEGTHEQWTFLNLS---PILHPMHIHLADFQVLGRDAYDASGFDL 518 (612)
T ss_dssp C---------EEEEEEEECS-----T-TSCCCEEEETTCEEEEEEEECS---SSCEEEEESSCCEEEEEEEEEECTTEET
T ss_pred c---------eeEEEECCcc-----C-CCCCceEecCCCEEEEEEEeCC---CCCCCeEEcCceEEEecccCcccccccc
Confidence 0 0001111100 0 0134567899999999999965 58999999999999999853222 11
Q ss_pred CCCC------------CCCCCCCCCcceeeeeCCCcEEEEEEEcc-CceeeEEeeechhhhhccceEEEEEecC
Q 008090 501 DKDL------------MNFNLVDPMERNTIGVPAGGWVAIRFFAD-NPGVWFMHCHLDVHTSWGLRMAWIVQNG 561 (578)
Q Consensus 501 ~~~~------------~~~~~~~p~~rDTv~vpp~g~v~irf~ad-npG~wl~HCHil~H~d~GM~~~~~V~~~ 561 (578)
.... ...+..++.|||||.|+|+++++|+|+|+ |||.|||||||++|+|.|||+.|.|.+.
T Consensus 519 ~~~g~~~~~~~~~g~~~~~~~~e~~~kDTv~v~Pg~~~~i~~~~~~~pG~w~~HCHil~Hed~GMm~~f~V~p~ 592 (612)
T 2g23_A 519 ALGGTRTPVRLDPDTPVPLAPNELGHKDVFQVPGPQGLRVMGKFDGAYGRFMYHCHLLEHEDMGMMRPFVVMPP 592 (612)
T ss_dssp TTTEESSCEEEEEEEECCCCTTSSSCBSEEEECSSEEEEEEEECCSCCEEEEEEESSHHHHTTTCEEEEEEECH
T ss_pred cccCcccccccccccccCCCcccccccCeEEECCCcEEEEEEEeCCCCccEEEEeCchhHhhcCCceEEEECch
Confidence 1000 23445667899999999999999999999 9999999999999999999999999864
No 18
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=100.00 E-value=5.9e-53 Score=430.51 Aligned_cols=271 Identities=26% Similarity=0.415 Sum_probs=226.1
Q ss_pred eeEEEEEEEEEEeeecC-ceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCcccc
Q 008090 32 ITRHYTFNIKYHNVTRL-CHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQC 110 (578)
Q Consensus 32 ~~~~~~l~~~~~~~~~~-g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~ 110 (578)
++|+|+|++++..+++. |..+.+|+|||++|||+|+|++||+|+|+|+|.++.+++|||||+.+....++||+|+++||
T Consensus 1 ~~~~~~l~~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~p~~t~~ 80 (318)
T 3g5w_A 1 EKREFDLSIEDTRIVLVGKRDFHTFAFNGQVPAPLIHVMEGDDVTVNVTNMTTLPHTIHWHGMLQRGTWQSDGVPHATQH 80 (318)
T ss_dssp CEEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCEEEEETTCEEEEEEEECSSSCBCCEEETCCCTTCGGGSCCBTTTBC
T ss_pred CeEEEEEEEEEEEEEcCCCcEEEEEEECCccCCceEEEeCCCEEEEEEEeCCCCceeEEecCcCCCCCcccCCCcccccc
Confidence 47999999999999875 78889999999999999999999999999999999999999999999887789999999999
Q ss_pred ccCCCCeEEEEEEEcCCCCceeeecCcchhc----ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHHHHHHH
Q 008090 111 PIQTGQSYTYNFTITGQRGTLLWHAHISWLR----STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEAIISQA 186 (578)
Q Consensus 111 ~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~----~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~~~~~~ 186 (578)
+|+||++++|+|++ .++||||||||...+. +||+|+|||+++...+.+. ..++|++|+++||+.......
T Consensus 81 ~i~PG~~~~y~f~~-~~~Gt~wYH~H~~~~~~~~~~Gl~G~lIV~~~~~~~~~~-~~d~e~~l~l~dw~~~~~~~~---- 154 (318)
T 3g5w_A 81 AIEPGDTFTYKFKA-EPAGTMWYHCHVNVNEHVTMRGMWGPLIVEPKNPLPIEK-TVTKDYILMLSDWVSSWANKP---- 154 (318)
T ss_dssp CBCTTCEEEEEEEC-CSCEEEEEECCSSHHHHHHHSCCEEEEEEECSSCCHHHH-TCCEEEEEEEEEECGGGTTCT----
T ss_pred cCCCCCEEEEEEEc-CCCEEEEEEccCChhhhhccCCCEEEEEEcCCCcccccc-cccceeEEEEEeecccccccc----
Confidence 99999999999998 7899999999997653 7999999999876432111 458999999999987532210
Q ss_pred HhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcc-cceEec
Q 008090 187 LQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYV-KPFDTD 265 (578)
Q Consensus 187 ~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v-~P~~~d 265 (578)
...+.....+++++|||+.++ ....+++++|++|||||+|++.. .+.||||||.|+||+.||.++ +|..+|
T Consensus 155 ~~~~~~~~~~d~~~ING~~~~-------~~~~l~v~~G~~vrlrliN~~~~-~h~~hlhGh~f~vi~~dG~~~~~p~~~d 226 (318)
T 3g5w_A 155 GEGGIPGDVFDYYTINAKSFP-------ETQPIRVKKGDVIRLRLIGAGDH-VHAIHTHGHISQIAFKDGFPLDKPIKGD 226 (318)
T ss_dssp TCCCCTTCCCCEEEETTBCBT-------SSCCEEECTTCEEEEEEEECSSS-CEEEEETTSCEEEEEETTEEEEEEEEES
T ss_pred ccCCCCCCcCcEEEEcCcCCC-------CCccEEeCCCCEEEEEEEeCCCc-eEEEEECCcEEEEEecCCcccCCCcccc
Confidence 011112234689999999864 23458999999999999999965 567999999999999999988 799999
Q ss_pred EEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCC-CCCCcceEEEEEEeCCC
Q 008090 266 KLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMG-TIDNSTTAGILEYKHPS 319 (578)
Q Consensus 266 ~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~-~~~~~~~~ail~y~~~~ 319 (578)
++.|.||||+||+|+++++ |.|++|||...-... ........++|+|++..
T Consensus 227 tv~l~pger~~v~~~a~~p---G~w~~hCH~~~H~~~g~~~~~Gm~~~i~~~g~~ 278 (318)
T 3g5w_A 227 TVLIGPGERYDVILNMDNP---GLWMIHDHVDTHTTNGDKPDGGIMTTIEYEEVG 278 (318)
T ss_dssp EEEECTTCEEEEEEECCSC---SEEEEEESSGGGSCBTTBSSCBSEEEEEETTTC
T ss_pred EEEECCCCEEEEEEECCCC---eeEEEEeccHHHhhccCcCCCCCEEEEEECCCC
Confidence 9999999999999999987 999999996432210 01123557899998753
No 19
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=100.00 E-value=2.6e-51 Score=423.01 Aligned_cols=271 Identities=28% Similarity=0.477 Sum_probs=225.0
Q ss_pred eeEEEEEEEEEEeeecC-ceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCcccc
Q 008090 32 ITRHYTFNIKYHNVTRL-CHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQC 110 (578)
Q Consensus 32 ~~~~~~l~~~~~~~~~~-g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~ 110 (578)
++++|+|++++..++++ |.++.+|+|||++|||+|+|++||+|+|+|+|.+..+++|||||+.+...+|+||+|+++||
T Consensus 2 ~~~~~~l~~~~~~~~~~~g~~~~~~~~NG~~pGP~I~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGvp~vtq~ 81 (339)
T 2zwn_A 2 AEREFDMTIEEVTIKVAPGLDYKVFGFNGQVPGPLIHVQEGDDVIVNVTNNTSLPHTIHWHGVHQKGTWRSDGVPGVTQQ 81 (339)
T ss_dssp CEEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCEEEEETTCEEEEEEEEESSSCBCCEEETCCCTTCGGGSCCBTTTBC
T ss_pred ceEEEEEEEEEEEEEcCCCcEEEEEEECCccCCCeEEEECCCEEEEEEEECCCCCccEEeCCCCcCCCcccCCCCccccC
Confidence 47899999999999975 99999999999999999999999999999999999999999999999999899999999999
Q ss_pred ccCCCCeEEEEEEEcCCCCceeeecCcch--h-c-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHHHHHHH
Q 008090 111 PIQTGQSYTYNFTITGQRGTLLWHAHISW--L-R-STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEAIISQA 186 (578)
Q Consensus 111 ~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~--~-~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~~~~~~ 186 (578)
+|.||++++|+|++ .++||||||||... + . +||+|++||+++.....+ ...++|++++++||+.......
T Consensus 82 ~I~PG~~~~y~f~~-~~~Gt~wyH~H~~~~~q~~~~Gl~G~liV~p~~~~~~~-~~~d~e~~l~l~d~~~~~~~~~---- 155 (339)
T 2zwn_A 82 PIEAGDSYTYKFKA-DRIGTLWYHCHVNVNEHVGVRGMWGPLIVDPKQPLPIE-KRVTKDVIMMMSTWESAVADKY---- 155 (339)
T ss_dssp CBCTTCEEEEEEEC-CSCEEEEEECCSSHHHHTTTSCCEEEEEEECSSCCTTG-GGCSEEEEEEEEEECGGGTTCT----
T ss_pred ccCCCCeEEEEEEC-CCCEEEEEEecCCchhhhhcCCceEeEEecCCCccccc-ccCCceEEEEeeheeccccccc----
Confidence 99999999999998 68999999999876 3 3 799999999987543211 1347899999999986321100
Q ss_pred HhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcc-cceEec
Q 008090 187 LQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYV-KPFDTD 265 (578)
Q Consensus 187 ~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v-~P~~~d 265 (578)
...+.....++.++|||+.++ ....+++++|++|||||+|++.. .+.||||||.|+||+.||.++ .|..+|
T Consensus 156 ~~~g~~~~~~~~~~ING~~~~-------~~~~~~v~~G~~vrlrliN~~~~-~h~~hlhGh~f~vi~~DG~~~~~p~~~d 227 (339)
T 2zwn_A 156 GEGGTPMNVADYFSVNAKSFP-------LTQPLRVKKGDVVKIRFFGAGGG-IHAMHSHGHDMLVTHKDGLPLDSPYYAD 227 (339)
T ss_dssp TCCCSTTSCCCEEEETTBCTT-------SSCCEEECTTCEEEEEEEECSSS-CEEEEETTCCEEEEEETTEEEEEEEEES
T ss_pred CCCCCCccccceEEEccccCC-------CcccEEECCCCEEEEEEEeCCCc-eEEEEECCcEEEEEEeCCeecCCCcEEE
Confidence 001111124688999999763 23468999999999999999954 778999999999999999998 489999
Q ss_pred EEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCC-CCCCCcceEEEEEEeCCC
Q 008090 266 KLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGM-GTIDNSTTAGILEYKHPS 319 (578)
Q Consensus 266 ~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~-~~~~~~~~~ail~y~~~~ 319 (578)
++.|.||||+||+|+++++ |.|+++||...-.. +........++|+|.+..
T Consensus 228 tv~l~pg~r~~v~~~~~~p---G~w~~hch~~~H~~~~~~~~~gm~a~l~~~g~~ 279 (339)
T 2zwn_A 228 TVLVSPGERYDVIIEADNP---GRFIFHDHVDTHVTAGGKHPGGPITVIEYDGVP 279 (339)
T ss_dssp EEEECTTCEEEEEEECCSC---SEEEEEECCGGGSCBTTBSSCSSEEEEEETTSC
T ss_pred EEEECCCCEEEEEEEeCCC---eeEEEEEechhhcccccccCCCcEEEEEECCCC
Confidence 9999999999999999987 99999999754211 101223457999998753
No 20
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=100.00 E-value=2.6e-53 Score=476.51 Aligned_cols=239 Identities=17% Similarity=0.204 Sum_probs=183.5
Q ss_pred EEEEEEEEEeeecC-ceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCC-------
Q 008090 35 HYTFNIKYHNVTRL-CHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAY------- 106 (578)
Q Consensus 35 ~~~l~~~~~~~~~~-g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~------- 106 (578)
...|+++++..+.. |+.+..|+ ++|||+|||++||+|+|+|+|.+++++||||||+++... +||+|+
T Consensus 48 ~k~l~~~~~~~~~~~~~~~~~~~---~~pGP~Ir~~~GD~v~V~v~N~l~~~tsIHwHGl~~~~~--~DG~p~~Dg~~~~ 122 (742)
T 2r7e_A 48 KKTLFVEFTDHLFNIAKPRPPWM---GLLGPTIQAEVYDTVVITLKNMASHPVSLHAVGVSYWKA--SEGAEYDDQTSQR 122 (742)
T ss_dssp ECCCCCCCSSSCCCCSSCSTTTT---TTSEEEEEECSEEEEECCEECCSSSCCCCCCSSSCCCSS--SSCCCSSCSCCSS
T ss_pred EEEEEEEecceEEECCccccccc---CCcCCeEEEECCCEEEEEEEECCCCCEeEEecCcccCcc--ccCCccCCCCccc
Confidence 33566666666654 55555554 999999999999999999999999999999999998653 666654
Q ss_pred -ccccccCCCCeEEEEEEEcC---------CCCceeeecCcchh--c-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeee
Q 008090 107 -VTQCPIQTGQSYTYNFTITG---------QRGTLLWHAHISWL--R-STLYGPIIILPKRNESYPFQKPHKEIPILFGE 173 (578)
Q Consensus 107 -~~q~~i~pG~~~~y~f~~~~---------~~Gt~wYH~H~~~~--~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d 173 (578)
++||+|+||++++|+|++++ ++||||||||.+.. . +||+|+|||+++.....+.....+|+++++++
T Consensus 123 ~vtq~~I~PG~s~tY~f~v~~~~gP~~~d~~~GT~wYHsH~~~~~q~~~GL~G~lIV~~~~~~~~~~~~~~~e~~l~~~~ 202 (742)
T 2r7e_A 123 EKEDDKVFPGGSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLIGALLVCREGSLAKEKTQTLHKFILLFAV 202 (742)
T ss_dssp SSSSSSCCTTCEECCEEEECGGGSCCSSSCSSCCEEECCCSCSHHHHHHHCCEEEEECSSSCTTTTTTTCCCEECCCEEC
T ss_pred ccccCcCCCCCeEEEEEEeccccCCCcCCCCcEEEEEccCCChHHHhhCCcEEEEEEecCcccCcccCceeeEEEEEeec
Confidence 88999999999999999853 46999999999873 3 89999999999865332211224888888764
Q ss_pred ------cccCChHHHHHHHHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCC-eEEEEEcC
Q 008090 174 ------WFNVDPEAIISQALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALND-ELFFSIAN 246 (578)
Q Consensus 174 ------~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~-~~~~~l~g 246 (578)
|+.......+.. ..........+.++|||+.. | ..+.+.+++|++|||||+|++... .+.|||||
T Consensus 203 ~de~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~ING~~~----~---~~~~l~v~~Ge~vrlrliN~g~~~~~h~~hlhG 274 (742)
T 2r7e_A 203 FDEGKSWHSETKNSLMQD-RDAASARAWPKMHTVNGYVN----R---SLPGLIGCHRKSVYWHVIGMGTTPEVHSIFLEG 274 (742)
T ss_dssp CCCSSSSCCCCCC--------CCSCCCCCCCCEETTBCT----B---CCCCCEECSSSCEEEECCCCCSSSCCCCCCCTT
T ss_pred ccCCcccccccccccccc-CCCccccccCceEEECCccC----C---CCcceEEcCCCEEEEEEEeCCCCCcceEEEECC
Confidence 544432211111 11111122346789999974 2 346789999999999999999775 67899999
Q ss_pred ceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeec
Q 008090 247 HTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPY 297 (578)
Q Consensus 247 h~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 297 (578)
|.|+|++ ..+|++.|.|||+++|.++++++ |.|++|||..
T Consensus 275 h~f~Vvg--------~~~Dtv~v~Pg~~~~v~~~~~~p---G~w~~hCH~~ 314 (742)
T 2r7e_A 275 HTFLVRN--------HRQASLEISPITFLTAQTLLMDL---GQFLLFCHIS 314 (742)
T ss_dssp CCCEETT--------EECCSCCCCTTCCCEEEECCCSC---SEECCCCCSS
T ss_pred CEEEEEe--------EecceEEeCCCcEEEEEEEeCCC---eeEEEEeCCh
Confidence 9999974 35799999999999999999998 9999999964
No 21
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=100.00 E-value=4.4e-51 Score=476.60 Aligned_cols=460 Identities=15% Similarity=0.177 Sum_probs=297.6
Q ss_pred ccccccceeEEEEEEEEEEeeecCc--e--------------------------eeeEE-------EECCC--------C
Q 008090 25 LPEFAAGITRHYTFNIKYHNVTRLC--H--------------------------TRNII-------SVNGQ--------F 61 (578)
Q Consensus 25 ~~~~~~~~~~~~~l~~~~~~~~~~g--~--------------------------~~~~~-------~~Ng~--------~ 61 (578)
++..++|++|+|.|.|++..++... . .+..+ +||+. +
T Consensus 13 ~~~~~~~~~r~y~i~~~~~~w~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 92 (1065)
T 2j5w_A 13 CSTPAWAKEKHYYIGIIETTWDYASDHGEKKLISVDTEHSNIYLQNGPDRIGRLYKKALYLQYTDETFRTTIEKPVWLGF 92 (1065)
T ss_dssp -------CEEEEEEEEEEEEEESCCCCCCCBBTTBCSSSTHHHHCCCSSCCCSEEEEEEEEEESSSSTTSBCCCCGGGTT
T ss_pred hccccccceeEEEEEEEEEEeecCCCCcCCCccccchhhhheecccCCcccCCeEeEEEEEEecceeecCCcccccccCC
Confidence 3355678999999999999887552 2 12223 47877 9
Q ss_pred CCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeecc----CCCCCCCCC--ccccccCCCCeEEEEEEEcCC--------
Q 008090 62 PGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVT----SGWADGPAY--VTQCPIQTGQSYTYNFTITGQ-------- 127 (578)
Q Consensus 62 pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~----~~~~DG~~~--~~q~~i~pG~~~~y~f~~~~~-------- 127 (578)
|||+||+++||+|+|+|+|.|+++++|||||+++.. .+|.||+++ ++||+|+||++++|+|+++++
T Consensus 93 PGP~Ir~~~GD~v~v~v~N~l~~~tsiHwHGl~~~~~~DG~~~~dg~~g~~~t~~~I~PG~t~tY~f~~~~~~gp~~~d~ 172 (1065)
T 2j5w_A 93 LGPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDG 172 (1065)
T ss_dssp SCCCEEEETTCEEEEEEEEESSSCBCCEESSSBCCGGGCCCCSCCCCCGGGTGGGCBCTTCEEEEEEECCSTTSCCTTSC
T ss_pred cCCeEEEeCCeEEEEEEEECCCCCeeEEeCCccCCcccCCcccCCCCCcccccccccCCCCEEEEEEEeccccCCccCCC
Confidence 999999999999999999999999999999999874 467888888 899999999999999998544
Q ss_pred -CCceeeecCcchhc---ccceeeEEEeCCCCCCCCCC-CCCCcEeEEee------ecccCChHHHHHHHHhcCC----C
Q 008090 128 -RGTLLWHAHISWLR---STLYGPIIILPKRNESYPFQ-KPHKEIPILFG------EWFNVDPEAIISQALQTGA----G 192 (578)
Q Consensus 128 -~Gt~wYH~H~~~~~---~Gl~G~liV~~~~~~~~p~~-~~~~e~~l~~~------d~~~~~~~~~~~~~~~~g~----~ 192 (578)
+||||||||.+.++ +||+|+|||++++....|.+ ..|+|++|+++ ||+..+....+. ...+. .
T Consensus 173 ~aGT~wYHsH~~~~~qv~~GL~G~lIV~~~~~~~~p~~~~~d~e~~l~l~d~d~~~~w~~~~~~~~~~--~~p~~~~~~~ 250 (1065)
T 2j5w_A 173 NCVTRIYHSHIDAPKDIASGLIGPLIICKKDSLDKEKEKHIDREFVVMFSVVDENFSWYLEDNIKTYC--SEPEKVDKDN 250 (1065)
T ss_dssp SEEEEEEECCSSHHHHHHHTCEEEEEEECTTCBSSSSBTTCCEEEEEEEEEEEGGGSTTHHHHHHHHC--SCGGGCCTTC
T ss_pred CceEEEEEeccCchhHhhCccEEEEEEecCcccCCCccCCCccceEEEeeeecCCccccccchhhhhh--cCcccccccc
Confidence 49999999999875 89999999999876443332 46889999999 455432211110 00000 0
Q ss_pred ---CCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCC-CeEEEEEcCceEEEEeecCCcccceEecEEE
Q 008090 193 ---PNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALN-DELFFSIANHTLTVVEADAVYVKPFDTDKLL 268 (578)
Q Consensus 193 ---~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~-~~~~~~l~gh~~~via~DG~~v~P~~~d~v~ 268 (578)
...++.++|||+.+. ..+.+.+++|++|||||+|+|.. ..+.|||+||+|++ +|+.+|++.
T Consensus 251 ~~~~~~~~~~~iNG~~~~-------~~~~l~v~~Ge~vRlRliNag~~~~~~~~~i~Gh~f~v--------~p~~~dtv~ 315 (1065)
T 2j5w_A 251 EDFQQSNRMYSVNGYTFG-------SLSGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALTN--------KNYRIDTIN 315 (1065)
T ss_dssp HHHHHHTEEEEETTEETT-------CCCCCEEETTCEEEEEEEECSSTTCCEEEEETTCCEEE--------TTEEESEEE
T ss_pred ccccccCcEEEECCccCC-------CCcceEECCCCEEEEEEEcCCcccceeEEEEcCCEEEE--------CCeeecEEE
Confidence 002357999999751 24679999999999999999976 58889999999994 688999999
Q ss_pred eCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCC-ccccccc
Q 008090 269 ITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSIND-TSFAVNF 347 (578)
Q Consensus 269 l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~ 347 (578)
|+||||+||+|+++++ |.|+|+||...-. .....+.++|.+.... . .... |....... ...+...
T Consensus 316 I~pGer~dVlv~~~~p---G~y~i~~h~~~h~-----~~Gm~~~~~V~~~~~~----~-~~~~-~~g~~~~~~~i~A~e~ 381 (1065)
T 2j5w_A 316 LFPATLFDAYMVAQNP---GEWMLSCQNLNHL-----KAGLQAFFQVQECNKS----S-SKDN-IRGKHVRHYYIAAEEI 381 (1065)
T ss_dssp ECBTCEEEEEEECCSC---EEEEEEECSHHHH-----HTTCEEEEEEECSCCC----C-CCCC-CTTSEEEEEEEEEEEE
T ss_pred ECCCcEEEEEEEeCCC---eeEEEEecCcchh-----hCCCEEEEEEecCCCc----c-cccc-ccccceeEEEEeceec
Confidence 9999999999999996 9999999964321 1245788888765330 0 0000 11000000 0000000
Q ss_pred ccccccccCCCC-C-CCCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhhhcCCCCCcc
Q 008090 348 TRKFRSLASVKY-P-ANVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYFFGQNNGVY 425 (578)
Q Consensus 348 ~~~l~~l~~~~~-p-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~ 425 (578)
..++.+.....+ . +..++......++... ....|.+++-.++ +++.. +.|
T Consensus 382 ~wdy~~~~~~~~~~~~~~~~~s~~~~~l~~~------------~~~ig~~y~k~v~-~~y~d---------------~~f 433 (1065)
T 2j5w_A 382 IWNYAPSGIDIFTKENLTAPGSDSAVFFEQG------------TTRIGGSYKKLVY-REYTD---------------ASF 433 (1065)
T ss_dssp EEESCTTSBCTTTCCBTTCTTCTTHHHHCCB------------TTBCCSEEEEEEE-EEESS---------------TTC
T ss_pred ccccCCCCcccccccccCCCcccchhhhccC------------CcccCceEeeeee-ecccC---------------Cce
Confidence 011111000000 0 0001111110001000 0113344443333 33321 233
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCC
Q 008090 426 TTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLM 505 (578)
Q Consensus 426 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~ 505 (578)
..+.+.. |. +....--++++.++.|++++++|+|.. ...|+||+||+.|++++.|. .|....
T Consensus 434 ~~~~~~~-~~----------~~~~g~lgpvi~a~~gd~i~i~f~N~~---~~~~s~h~hG~~f~~~~~g~-~~~~~~--- 495 (1065)
T 2j5w_A 434 TNRKERG-PE----------EEHLGILGPVIWAEVGDTIRVTFHNKG---AYPLSIEPIGVRFNKNNEGT-YYSPNY--- 495 (1065)
T ss_dssp CSBCCCC-GG----------GGGGTTSCCCEEEETTEEEEEEEEECS---SSCBCCEEESSBCCGGGCSB-CCBCC----
T ss_pred EEcCcCC-cc----------cccccccCceEEEeCCCEEEEEEEECC---CCCccCcccceeeeccCCCc-cccccc---
Confidence 2221111 10 000122367899999999999999964 47899999999999988753 221100
Q ss_pred CCCCCCCCcceeeeeCCCcEEEEEEEc---cCce-------eeEEeeechhhhh--ccceEEEEEecCC
Q 008090 506 NFNLVDPMERNTIGVPAGGWVAIRFFA---DNPG-------VWFMHCHLDVHTS--WGLRMAWIVQNGA 562 (578)
Q Consensus 506 ~~~~~~p~~rDTv~vpp~g~v~irf~a---dnpG-------~wl~HCHil~H~d--~GM~~~~~V~~~~ 562 (578)
....++..+++..|.||+..+-++.. +.|| .|+||+|+..=.| .|+.+.+.|....
T Consensus 496 -~~~~~~~~~~~~~v~Pg~~~~y~w~v~~~~~p~~~dp~c~~~~y~s~vd~~~d~~sGLiGpllic~~~ 563 (1065)
T 2j5w_A 496 -NPQSRSVPPSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVDPTKDIFTGLIGPMKICKKG 563 (1065)
T ss_dssp -------CCCCSSCBCTTCEEEEEEECCGGGSCCSSSCSEEEEEEECBSSHHHHHHHTCEEEEEEECTT
T ss_pred -ccccCCccCCCcccCCCCcEEEEEEccCCcCCCCCCCCeeEEEEeccCCcccccccccccceEEeccc
Confidence 00112335666778899988888876 3454 8999999988655 8999999999754
No 22
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=100.00 E-value=3.6e-48 Score=415.87 Aligned_cols=402 Identities=15% Similarity=0.122 Sum_probs=258.6
Q ss_pred cceeEEEEEEEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccc
Q 008090 30 AGITRHYTFNIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQ 109 (578)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q 109 (578)
++.+++++++++...+..+| .+++|||++ ||+|+|++||+|+|+|+|.+...+++||||... .++
T Consensus 25 ~~~~~~~~~~~~~~~~~f~g---~~~~vNG~~-~p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~-----------~~~ 89 (447)
T 2dv6_A 25 APVVFTLRTGIAEGRMVYIG---VGGDIDHKI-NPTLVVHEGETVQVNLVNGEGAQHDVVVDQYAA-----------RSA 89 (447)
T ss_dssp CCEEEEEEEEEETTEEEEEE---ESGGGTTCB-SCCEEEETTCEEEEEEECSSSSCBCCEETTTTE-----------ECC
T ss_pred CCceEEEEEEecccEEEEec---cceeecCCc-CCeEEEcCCCEEEEEEEcCCCCceEEEEccCCc-----------ccc
Confidence 45667777776655555554 456899999 899999999999999999998779999998532 257
Q ss_pred cccCCCCeEEEEEEEcCCCCceeeecCcchhc-ccceeeEEEeCCCCCCCCC-----CCCCCcEeEEeeecccCChHHH-
Q 008090 110 CPIQTGQSYTYNFTITGQRGTLLWHAHISWLR-STLYGPIIILPKRNESYPF-----QKPHKEIPILFGEWFNVDPEAI- 182 (578)
Q Consensus 110 ~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~p~-----~~~~~e~~l~~~d~~~~~~~~~- 182 (578)
|+|.||++++|.|++ .++||||||||..+++ +||.|.|+|+++....... .....++...+ |+........
T Consensus 90 ~~i~pG~~~~~~f~~-~~~Gt~~y~~~~~~h~~~Gm~G~i~V~~~~~~~~~~~~~~~~~~~~~~p~~~-d~~~~~~~~~~ 167 (447)
T 2dv6_A 90 IVNGKNASSTFSFVA-SKVGEFNYYCSIAGHRQAGMEGNIQVLPGNRAEMKSSGADITRDPADLPGPI-GPRQAKTVRID 167 (447)
T ss_dssp CBCSTTBEEEEEEEC-CSCEEEEEECCSTTHHHHTCEEEEEEESSCCCCCCCSSBCCBCCTTCSCCCC-CSCCCCEEEEE
T ss_pred eecCCCCeEEEEEEc-CCCEEEEEEeCCCChhhCCCEEEEEEeCCccccCCCcchhhccChhhcCCcc-ccCCCcEEEEE
Confidence 999999999999997 5699999999987776 7999999999875432100 00000010000 0000000000
Q ss_pred HH-HHHhcC-CCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCC-CCeEEEEEcCceEEEEeecCCcc
Q 008090 183 IS-QALQTG-AGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAAL-NDELFFSIANHTLTVVEADAVYV 259 (578)
Q Consensus 183 ~~-~~~~~g-~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~-~~~~~~~l~gh~~~via~DG~~v 259 (578)
+. ...... ..+...+.++|||+. ..|.+++++|++|||||+|.+. ...+.+|+||. ++.||.+
T Consensus 168 l~~~~~~~~~~~g~~~~~~~~NG~~---------pgp~i~v~~G~~v~~rl~N~~~~~~~~~ih~Hg~----~~~DG~~- 233 (447)
T 2dv6_A 168 LETVEVKGQLDDNTTYTYWTFNGKV---------PGPFLRVRVGDTVELHLKNHKDSLMVHSVDFHGA----TGPGGAA- 233 (447)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTBB---------SCCCEEEETTCEEEEEEEECTTCSSCBCCEETTC----CSGGGGG-
T ss_pred EEEEEEEEeccCCceeEEEEECCcc---------CCCeEEecCCCEEEEEEEeCCCCceeEEEeeccc----cCCCCCC-
Confidence 00 000000 001123678999984 2378999999999999999985 34567888874 3678863
Q ss_pred cceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCC
Q 008090 260 KPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSIN 339 (578)
Q Consensus 260 ~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~ 339 (578)
+++.|.||||+++.|+++++ |+||+|||...... . ......+.|.|..... + | ..+
T Consensus 234 -----~~~~i~pG~~~~~~~~~~~~---G~~~yh~h~~~~~~-~-~~~Gl~g~l~v~~~~~----------~-P---~~d 289 (447)
T 2dv6_A 234 -----AFTQTDPGEETVVTFKALIP---GIYVYHCATPSVPT-H-ITNGMYGLLLVEPEGG----------L-P---QVD 289 (447)
T ss_dssp -----GGCCBCTTCEEEEEEECCSC---EEEEEECCSSSHHH-H-HHTTCEEEEEEECTTC----------S-C---CCS
T ss_pred -----ccEEeCCCCEEEEEEECCCC---eEEEEEeCCCChHH-H-HhCCCEEEEEEeCCCC----------C-C---CCC
Confidence 33469999999999999886 99999998521000 0 0123456677764311 1 1 111
Q ss_pred CcccccccccccccccCCCCCCCCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhhhcC
Q 008090 340 DTSFAVNFTRKFRSLASVKYPANVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYFFG 419 (578)
Q Consensus 340 ~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~ 419 (578)
. .....+ ....... .. ...... .+.... .. ......|.+||+.+..
T Consensus 290 ~-~~~~~~----~~~~~~~---~~--~~~g~~--~~~~~~--------~~--~~~~~~~~iNG~~~~~------------ 335 (447)
T 2dv6_A 290 R-EFYVMQ----GEIYTVK---SF--GTSGEQ--EMDYEK--------LI--NEKPEYFLFNGSVGSL------------ 335 (447)
T ss_dssp E-EEEEEE----EEECBSS---CT--TCCEEC--CBBHHH--------HH--TTCCSEEEETTSTTCC------------
T ss_pred e-eEEEEe----cccccCC---cc--cccccc--cCChHH--------hh--ccCCCEEEECCcccCC------------
Confidence 1 000000 0000000 00 000000 000000 00 0001124455542210
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCC
Q 008090 420 QNNGVYTTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYD 499 (578)
Q Consensus 420 ~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~ 499 (578)
....++.++.|++++|+|.|.+. ...||||||||+|+||+.+.+.
T Consensus 336 -------------------------------~~~~~~~v~~g~~vrlrliN~~~--~~~h~~hlhGh~f~vv~~dG~~-- 380 (447)
T 2dv6_A 336 -------------------------------TRSHPLYASVGETVRIFFGVGGP--NFTSSFHVIGEIFDHVYSLGSV-- 380 (447)
T ss_dssp -------------------------------CCCCCEEECTTCEEEEEEEEEES--SCCEEEEEETCCEEEECGGGCS--
T ss_pred -------------------------------CCCcceEECCCCEEEEEEEeCCC--CceEeEEEcCcEEEEEEcCCcc--
Confidence 00245788999999999999652 4789999999999999975321
Q ss_pred CCCCCCCCCCCCCC-cceeeeeCCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEecCCCC
Q 008090 500 PDKDLMNFNLVDPM-ERNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQNGAQP 564 (578)
Q Consensus 500 ~~~~~~~~~~~~p~-~rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~ 564 (578)
+..|. +|||+.|+||+++.|+|+++|||.|+||||+++|++.||+++|+|.+...+
T Consensus 381 ---------~~~p~~~~dtv~l~pg~r~~i~~~~~~pG~~~~hch~~~h~~~Gm~~~~~v~~~~~~ 437 (447)
T 2dv6_A 381 ---------VSPPLIGVQTVSVPPGGATIVDFKIDRAGRYILVDHALSRLEHGLVGFLNVDGPKND 437 (447)
T ss_dssp ---------SSCCEEEESEEEECTTEEEEEEEECCSCEEEEEEESSGGGGGGTCCEEEEECSCSCC
T ss_pred ---------cCCCcccccEEEECCCcEEEEEEECCCCEEEEEEecCcCccccCCEEEEEEeCCCCc
Confidence 12344 699999999999999999999999999999999999999999999876553
No 23
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=100.00 E-value=2e-47 Score=384.98 Aligned_cols=235 Identities=29% Similarity=0.379 Sum_probs=205.3
Q ss_pred cceeEEEEEEEEEEeeecC-ceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCcc
Q 008090 30 AGITRHYTFNIKYHNVTRL-CHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVT 108 (578)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~-g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~ 108 (578)
.+..++|+|++++..+++. |..+.+|+|||++|||+|++++||+|+|+|+|.++.+++|||||++. .++||+|+++
T Consensus 31 ~~~~~~~~l~~~~~~~~~~~g~~~~~~~~ng~~pgP~i~~~~Gd~v~v~~~N~~~~~~~iH~HG~~~---~~~DG~p~~~ 107 (288)
T 3gdc_A 31 GRTLREWDIVAVDKDFEIAPGIIFKGWSYNGRIPGPTLWAREGDALRIHFTNAGAHPHTIHFHGVHR---ATMDGTPGIG 107 (288)
T ss_dssp SCEEEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCEEEEETTCEEEEEEEECSSSCBCCEESSCCC---GGGSCCTTST
T ss_pred CCcEEEEEEEEEEEEEEeCCCcEEEEEEECCccCCCcEEEeCCCEEEEEEEeCCCCcccEEeccccc---cccCCCCCcc
Confidence 3567899999999988865 89999999999999999999999999999999999999999999972 4599999999
Q ss_pred ccccCCCCeEEEEEEEcCCCCceeeecCcch---hc-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHHHHH
Q 008090 109 QCPIQTGQSYTYNFTITGQRGTLLWHAHISW---LR-STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEAIIS 184 (578)
Q Consensus 109 q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~---~~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~~~~ 184 (578)
|++|+||++++|+|++ +++||||||||... +. +||+|+|||++++..+ ..++|++|+++||+..+
T Consensus 108 ~~~i~PG~~~~y~f~~-~~~Gt~~yH~H~~~~~~~~~~Gl~G~liV~~~~~~~----~~d~e~~l~~~d~~~~~------ 176 (288)
T 3gdc_A 108 AGSIAPGQSFTYEFDA-TPFGTHLYHCHQSPLAPHIAKGLYGGFIVEPKEGRP----PADDEMVMVMNGYNTDG------ 176 (288)
T ss_dssp TCSBCTTCEEEEEEEC-CSCEEEEEECCCSSHHHHHHTTCEEEEEEECSSCCC----CCSEEEEEEEEEECCSS------
T ss_pred ceeECCCCEEEEEEEc-CCCccEEEEecCcchHHHHhCcCeEEEEEeCCccCC----CCcceEEEEEeeEecCC------
Confidence 9999999999999998 79999999999974 33 8999999999986532 35799999999998762
Q ss_pred HHHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCC-eEEEEEcCceEEEEeecCCcc-cce
Q 008090 185 QALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALND-ELFFSIANHTLTVVEADAVYV-KPF 262 (578)
Q Consensus 185 ~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~-~~~~~l~gh~~~via~DG~~v-~P~ 262 (578)
+ ..++.++|||+.+++ ....+++++|++|||||+|++... .+.||||||.|+|++ +|..+ .|.
T Consensus 177 -----g---~~~~~~~iNG~~~~~------~~~~l~v~~Ge~vr~~l~N~g~~~~~H~fHlhG~~f~v~~-~g~~~~~~~ 241 (288)
T 3gdc_A 177 -----G---DDNEFYSVNGLPFHF------MDFPVKVKQHELVRIHLINVLEYDPINSFHIHGNFFHYYP-TGTMLTPSE 241 (288)
T ss_dssp -----T---TCCSEEEETTSTTHH------HHSCEEEETTCCEEEEEEECCCSSSEEEEEETTCCEEEEE-TTCCSSCSE
T ss_pred -----C---CCcceEEECcccccc------cCcccccCCCCEEEEEEEeCCCCCcceeEEEcCCEEEEEc-CCCccCCCc
Confidence 1 135889999997631 124689999999999999999654 678999999999998 45444 678
Q ss_pred EecEEEeCCCceEEEEEEcCCCCCCCceEEEEee
Q 008090 263 DTDKLLITPGQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 263 ~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
..|++.|.||||++|+++++++ |.|+++||.
T Consensus 242 ~~Dtv~v~pg~~~~v~~~~~~p---G~~~~hCH~ 272 (288)
T 3gdc_A 242 YTDTISQVQGQRGILELRFPYP---GKFMFHAHK 272 (288)
T ss_dssp EESEEEEETTCEEEEEECCCSC---EEEEEECSS
T ss_pred eeeEEEeCCCceEEEEEECCCC---EEEEEEecC
Confidence 9999999999999999999988 999999995
No 24
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=100.00 E-value=1.6e-47 Score=392.75 Aligned_cols=263 Identities=20% Similarity=0.273 Sum_probs=219.2
Q ss_pred ccceeEEEEEEEEEEeeec-CceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCC--CceeEEEeeeeeccCCCCCCCC
Q 008090 29 AAGITRHYTFNIKYHNVTR-LCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVS--NNVTIHWHGVRQVTSGWADGPA 105 (578)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~-~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~--~~~siH~HG~~~~~~~~~DG~~ 105 (578)
..+++++|+|++++..+++ +|..+.+|+|||++|||+|+|++||+|+|+|+|.+. .++++||||+.. +||.+
T Consensus 34 ~~~~~~~~~l~~~~~~~~~~~G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~-----~dG~~ 108 (327)
T 1kbv_A 34 DYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATG-----QGGGA 108 (327)
T ss_dssp SSCCEEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCBEEEETTCEEEEEEEECTTCSSCBCCEETTCCS-----GGGGT
T ss_pred CCCCEEEEEEEEEEEEEEeCCCcEEEEEEECCccCCCeEEEeCCCEEEEEEEECCCCCCceeeEeCcccc-----CCCCC
Confidence 3568899999999999998 799999999999999999999999999999999986 589999999852 78877
Q ss_pred CccccccCCCCeEEEEEEEcCCCCceeeecCcch---hc-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHH
Q 008090 106 YVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISW---LR-STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEA 181 (578)
Q Consensus 106 ~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~---~~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~ 181 (578)
..+ .|.||++++|+|++ .++||||||||.+. +. +||+|+|||++++. .+.+|+|++++++||++.....
T Consensus 109 ~~~--~i~PG~~~~y~f~~-~~~Gt~wyH~h~~~~~~~~~~Gl~G~~iV~~~~~----~p~~d~e~~l~~~d~~~~~~~~ 181 (327)
T 1kbv_A 109 AAT--FTAPGRTSTFSFKA-LQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEG----LPKVDKEFYIVQGDFYTKGKKG 181 (327)
T ss_dssp TTT--CBCTTEEEEEEEEC-CSCEEEEEECCCSSHHHHHHTTCEEEEEEECTTC----CCCCSEEEEEEEEEECBSSCTT
T ss_pred cce--eecCCCEEEEEEEC-CCCeEEEEEeCCCChhhhhhcceEEEEEEecCCC----CCCCceEEEEEeeeeeccCccc
Confidence 533 59999999999997 78999999999753 33 89999999998753 2356899999999999865210
Q ss_pred -------HHHHHHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEee
Q 008090 182 -------IISQALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEA 254 (578)
Q Consensus 182 -------~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~ 254 (578)
.+.... + ..++.++|||+.+++.. .+.+++++|++|||||+|+|....+.|||+||.|+||+.
T Consensus 182 ~~g~~~~~~~~~~--~---~~~~~~~iNG~~~~~~~-----~~~l~v~~G~~vRlRliN~~~~~~~~~~l~Gh~f~vi~~ 251 (327)
T 1kbv_A 182 AQGLQPFDMDKAV--A---EQPEYVVFNGHVGALTG-----DNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYV 251 (327)
T ss_dssp CCEEECBCHHHHH--H---TCCSEEEETTSTTTTSG-----GGCEEEETTEEEEEEEEEEESSCCEEEEEETCCBSEEEG
T ss_pred cccccccChhHhc--c---CCCceEEEcCcccCCCC-----ceeEEeCCCCEEEEEEECCCCCCceeEEEeCCEEEEEEc
Confidence 011111 1 24589999999875422 257999999999999999998888999999999999999
Q ss_pred cCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCC
Q 008090 255 DAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSN 320 (578)
Q Consensus 255 DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~ 320 (578)
||.+++|..+|++.|+||||+||+|+++++ |.|+|+||..... ......++|+|++...
T Consensus 252 DG~~~~p~~~d~l~l~pGer~dv~v~~~~p---G~y~l~~h~~~~~----~~~g~~a~l~~~g~~~ 310 (327)
T 1kbv_A 252 EGGKLINENVQSTIVPAGGSAIVEFKVDIP---GNYTLVDHSIFRA----FNKGALGQLKVEGAEN 310 (327)
T ss_dssp GGSSCEECSBSEEEECTTEEEEEEEEECSC---EEEEEEESSTHHH----HHSSCEEEEEEESCCC
T ss_pred CCCcCCCCceeEEEECCCCEEEEEEEeCCC---eEEEEEecccccc----ccCCcEEEEEECCCCC
Confidence 999999999999999999999999999986 9999999964331 1235689999987543
No 25
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=100.00 E-value=5.1e-44 Score=382.75 Aligned_cols=265 Identities=21% Similarity=0.256 Sum_probs=219.0
Q ss_pred ccceeEEEEEEEEEEeeec-CceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCC--CceeEEEeeeeeccCCCCCCCC
Q 008090 29 AAGITRHYTFNIKYHNVTR-LCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVS--NNVTIHWHGVRQVTSGWADGPA 105 (578)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~-~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~--~~~siH~HG~~~~~~~~~DG~~ 105 (578)
..+.+++|+|++++..+++ +|..+.+|+|||++|||+|+|++||+|+|+|+|.++ .+++|||||+.. +||.+
T Consensus 24 ~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~ng~~pgp~i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~~-----~dG~~ 98 (442)
T 2zoo_A 24 DHSAKVVINLETREQVGRIADGVEYVFWSFGETVPGSFIRVREGDEIEFNLSNHPSSKMPHNIDLHAVTG-----PGGGA 98 (442)
T ss_dssp SSCCEEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCBEEEETTCEEEEEEEECTTCSSCBCCEETTCCS-----GGGGG
T ss_pred CCCcEEEEEEEEEEEEEEcCCCcEEEEEEECCcCCCCcEEEeCCCEEEEEEEECCCCCCCCCEEecCCcC-----CCCCC
Confidence 3568899999999999995 799999999999999999999999999999999985 599999999863 68876
Q ss_pred CccccccCCCCeEEEEEEEcCCCCceeeecCcc---hhc-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHH
Q 008090 106 YVTQCPIQTGQSYTYNFTITGQRGTLLWHAHIS---WLR-STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEA 181 (578)
Q Consensus 106 ~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~---~~~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~ 181 (578)
..+ +|.||++++|+|++ +++||||||||.+ .+. +||+|+|||++++.. +.+|+|++++++||+......
T Consensus 99 ~~~--~i~pg~~~~y~f~~-~~~Gt~~yH~H~~~~~~~~~~Gl~G~~iv~~~~~~----~~~d~e~~l~l~d~~~~~~~~ 171 (442)
T 2zoo_A 99 ESS--FTAPGHTSTFNFKA-LNPGLYIYHCATAPVGMHIANGMYGLILVEPKEGL----APVDREYYLVQGDFYTKGEFG 171 (442)
T ss_dssp GGC--CBCTTCEEEEEEEC-CSCEEEEEECCCSSHHHHHHTTCEEEEEEECTTCC----CCCSEEEEEEEEEECBSSCTT
T ss_pred ccE--EECCCCEEEEEEEc-CCCeEEEEecCCCChHHHHhCccEEEEEEeCCCCC----CCCCceEEEEeeeeeccCccc
Confidence 543 69999999999997 7899999999864 233 899999999987532 256899999999998765310
Q ss_pred H-----HHHHHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecC
Q 008090 182 I-----ISQALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADA 256 (578)
Q Consensus 182 ~-----~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG 256 (578)
. +...... ...+++++|||+.++.. ..+.+.+++|++|||||+|+|....+.|||+||+|+||+.||
T Consensus 172 ~~~~~~~~~~~~~---~~~~~~~liNG~~~~~~-----~~~~l~v~~G~~vrlrliN~~~~~~~~~~i~g~~~~vi~~DG 243 (442)
T 2zoo_A 172 EAGLQPFDMAKAI---DEDADYVVFNGSVGSTT-----DENSLTAKVGETVRLYIGNGGPNLVSSFHVIGEIFDTVYVEG 243 (442)
T ss_dssp CCEEECBCHHHHH---TTCCSEEEETTSTTTTS-----GGGCEEEETTCEEEEEEEEEESSCCEEEEEETCCBSEEEGGG
T ss_pred ccccccCChhHhc---cCCCCEEEECCCcCCCC-----CCCceEeCCCCEEEEEEEeCCCCCceeeEEcCCEEEEEecCC
Confidence 0 0000011 13568999999976321 125799999999999999999888899999999999999999
Q ss_pred CcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCC
Q 008090 257 VYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSN 320 (578)
Q Consensus 257 ~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~ 320 (578)
.+++|..++++.|.||||+||+|+++++ |.|+++|+.+... ......++++|.+...
T Consensus 244 ~~~~p~~~~~~~l~pg~r~~v~v~~~~~---G~y~~~~~~~~~~----~~~g~~a~l~v~~~~~ 300 (442)
T 2zoo_A 244 GSLKNHNVQTTLIPAGGAAIVEFKVEVP---GTFILVDHSIFRA----FNKGALAMLKVEGPDD 300 (442)
T ss_dssp SSCEECSBSEEEECTTEEEEEEEECCSC---EEEEEEESSTHHH----HTTSCEEEEEEESCCC
T ss_pred ccCCCccceEEEECCCeeEEEEEEcCCC---CeEEEEecccccc----cccCceEEEEecCCCC
Confidence 9999999999999999999999999986 9999999965431 1235689999988643
No 26
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=100.00 E-value=5.4e-45 Score=425.33 Aligned_cols=402 Identities=15% Similarity=0.145 Sum_probs=263.3
Q ss_pred eeeeEEEECCCCCC--cEEEEecCCEEEEEEEeCCCCceeEEEeeeeecc-CCCCCCCCCccccccCCCCeEEEEEEEcC
Q 008090 50 HTRNIISVNGQFPG--PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVT-SGWADGPAYVTQCPIQTGQSYTYNFTITG 126 (578)
Q Consensus 50 ~~~~~~~~Ng~~pg--P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~-~~~~DG~~~~~q~~i~pG~~~~y~f~~~~ 126 (578)
..+.+.++||++|| |+|++++||+|+++|.|. .+.+||||+++.. +.|+||++.++ |+|.||.+++|+|++ .
T Consensus 616 ~~~~~~~iNG~~~g~~P~l~~~~gd~v~~~v~~~---g~~~~~Hgl~~~g~t~~~dG~~~~t-~~i~pg~~~t~~~~~-~ 690 (1065)
T 2j5w_A 616 ESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSA---GNEADVHGIYFSGNTYLWRGERRDT-ANLFPQTSLTLHMWP-D 690 (1065)
T ss_dssp HHTEEEEETTBCTTCCCCCEEETTCCEEEEEECC---CSTTCCEEEEETTCCEEETTEEESE-EEECTTCEEEEEECC-C
T ss_pred ccceEEEEeeEecCCCCceEEeCCCEEEEEEEcC---CCcceEEeeEEeCCceeecCeecce-EeecCCceEEEEEec-C
Confidence 46789999999999 889999999999999976 4559999999998 88999999998 999999999999997 7
Q ss_pred CCCceeeecCcchhc-ccceeeEEEeCCCCCCCCCCCCCCcEeEEe----eecccCChHHHHHHHHh-cCCCCCCCceEE
Q 008090 127 QRGTLLWHAHISWLR-STLYGPIIILPKRNESYPFQKPHKEIPILF----GEWFNVDPEAIISQALQ-TGAGPNVSDAYT 200 (578)
Q Consensus 127 ~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~----~d~~~~~~~~~~~~~~~-~g~~~~~~~~~l 200 (578)
++||||||||...++ +||.|.++|++......+...++.|.++++ +||++........+... .+.. +...+
T Consensus 691 ~~Gt~~~h~h~~~~~~~Gm~g~~~V~~~~~~~~~~~~yd~e~~~~iaa~~~dW~~~~~~~~~~~~~~~~~~~---p~~~~ 767 (1065)
T 2j5w_A 691 TEGTFNVECLTTDHYTGGMKQKYTVNQCRRQSEDSTFYLGERTYYIAAVEVEWDYSPQREWEKELHHLQEQN---VSNAF 767 (1065)
T ss_dssp SCEEEEEEECSHHHHHTTCEEEEEEECCSCCCSCCCCCSEEEEEEEEEEEEEEESCSCCHHHHHHHHHHTCC---CCCTT
T ss_pred CCeEEEEecCCCcccCCCcEEEEEEcCCccccCCccCCCcceEEEEeeeeccccCCcchhhhhhccCCCccC---cccee
Confidence 999999999999877 999999999987544444446788999999 89998776654332211 1111 12222
Q ss_pred EcCccC----------------CCccc----------CCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEee
Q 008090 201 INGLPG----------------PLYNC----------SSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEA 254 (578)
Q Consensus 201 iNG~~~----------------~~~~~----------~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~ 254 (578)
+|+... ..+.. -+-..|.|++++|+++++|++|... ..+++|.||... ...
T Consensus 768 ~n~~~~~iG~tY~k~~y~~~~d~tft~~~~r~~~~~~v~~pGP~I~v~~Gd~v~v~l~N~~~-~~~sih~HGl~~--~~~ 844 (1065)
T 2j5w_A 768 LDKGEFYIGSKYKKVVYRQYTDSTFRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMAT-RPYSIHAHGVQT--ESS 844 (1065)
T ss_dssp TCCTTTCCCSEEEEEEEEEESSTTCCSBCCCCGGGGGGTTSCCCEEEETTEEEEEEEEECSS-SCBCCEESSCBC--SCS
T ss_pred ecCCCccccceEeeeEEEEEcCCcceecccCCccccccCCCCCEEEEecCCEEEEEEEeCCC-CCceEeeccccc--cCC
Confidence 333210 00111 0124589999999999999999974 555688887443 222
Q ss_pred cCCcccceEecEEEeCCCceEEEEEEcCCCC-------CCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccc
Q 008090 255 DAVYVKPFDTDKLLITPGQTANVLLRTKPYF-------PNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKK 327 (578)
Q Consensus 255 DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~-------~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~ 327 (578)
| ...+.||++++..+...+.. .-|.|++|++.... . .. .....+.|.+.....
T Consensus 845 -~---------~~~i~PG~~~ty~~~~~~~~gp~~~~~~~gt~wYhsh~~~~-~-q~-~~GL~G~liV~~~~~------- 904 (1065)
T 2j5w_A 845 -T---------VTPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQV-K-DL-YSGLIGPLIVCRRPY------- 904 (1065)
T ss_dssp -C---------CCCBCTTCEEEEEEECCGGGSCCTTSCSEEEEEEECCTTHH-H-HH-HTTCEEEEEEECCC--------
T ss_pred -C---------CceeCCCCeEEEEEEecCccCCccccCCceEEEEecCCChH-H-hh-hccccceeEecCccc-------
Confidence 2 12567999988888775421 01589999884210 0 00 012233344433111
Q ss_pred cCCCCCCCCCCCCcccccccccccccccCCCCCCCCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeec
Q 008090 328 LQLYKPTLPSINDTSFAVNFTRKFRSLASVKYPANVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVL 407 (578)
Q Consensus 328 ~~~~~p~~~~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~ 407 (578)
+.+. ..+.+.+-.+.+.. +.. ++ .+....|+.+|..
T Consensus 905 ---l~~~---------------------------~~~~d~D~~l~~~~-~d~------------~~-~~y~~~n~~~~~~ 940 (1065)
T 2j5w_A 905 ---LKVF---------------------------NPRRKLEFALLFLV-FDE------------NE-SWYLDDNIKTYSD 940 (1065)
T ss_dssp ----------------------------------CCCCEEEEEEEEEE-EEG------------GG-STTHHHHHHHHCS
T ss_pred ---cccc---------------------------CCCcceEEEEEEEe-ecC------------Cc-ceeeccCcccccC
Confidence 0000 00011111111110 000 00 0000112222221
Q ss_pred -C-cchhhhhhhcCCCCCcccCCCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccC
Q 008090 408 -P-STAILQSYFFGQNNGVYTTDFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHG 485 (578)
Q Consensus 408 -p-~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG 485 (578)
| ..+++...+.. .+..+.+||.. -.....+.++.|++|+|+|.|.+. ..+.|||||||
T Consensus 941 ~P~~v~~~~~~~~~-------------~~~~~~iNG~~------~~~~~~~~v~~G~~vr~~l~N~g~-~~~~HpfHlHG 1000 (1065)
T 2j5w_A 941 HPEKVNKDDEEFIE-------------SNKMHAINGRM------FGNLQGLTMHVGDEVNWYLMGMGN-EIDLHTVHFHG 1000 (1065)
T ss_dssp CGGGCCTTCHHHHH-------------HTEEEEETTBC------TTCCCCCEEETTCEEEEEEEECCS-TTCCEEEEESS
T ss_pred CccccCcchhhhhc-------------cCceEEECCcc------CCCCccEEeCCCCEEEEEEEeCCC-CCcceeEEEcc
Confidence 1 11221110000 00011111211 012456789999999999999652 34799999999
Q ss_pred CceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEecCCC
Q 008090 486 FNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQNGAQ 563 (578)
Q Consensus 486 ~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~ 563 (578)
|.|+|++.+ |.|||||.|+|+++++|+|++||||.|+||||+++|++.|||++|.|.+...
T Consensus 1001 ~~F~vv~~~-----------------p~~~DTv~v~pg~~~~v~~~ad~pG~w~~HCH~~~H~~~GM~~~~~V~~~~~ 1061 (1065)
T 2j5w_A 1001 HSFQYKHRG-----------------VYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTVLQNED 1061 (1065)
T ss_dssp CCEEETTTT-----------------CEEESEEEECTTCEEEEEECCCSCEEEEEEECCHHHHHTTCEEEEEEECCC-
T ss_pred cEEEEEecC-----------------CceeeEEEECCCCeEEEEEECCCCeeEEEEeCCHHHHhcCCcEEEEEecCcc
Confidence 999998652 6789999999999999999999999999999999999999999999987543
No 27
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=100.00 E-value=1.7e-44 Score=361.39 Aligned_cols=240 Identities=20% Similarity=0.281 Sum_probs=196.9
Q ss_pred cccceeEEEEEEEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCc
Q 008090 28 FAAGITRHYTFNIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYV 107 (578)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~ 107 (578)
++++.+|+|+|+|++.. .+.....+++|||++|||+||+++||+|+|+|+|.++.++||||||+.+... +||++ +
T Consensus 2 ~~~g~~~~~~l~~~~~~--~~~~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~~~~~~siH~HG~~~~~~--~DG~~-~ 76 (276)
T 3kw8_A 2 PAGGEVRHLKMYAEKLA--DGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYEIS--SDGTA-M 76 (276)
T ss_dssp --CCCEEEEEEEEEECT--TSCEEEESSTTCCBSSCCCEEEETTCEEEEEEEECSSSCBCCEESSSBCCGG--GSCCT-T
T ss_pred CCcceEEEEEEEEEeCC--CCceecceeccCCcccCCeEEEECCCEEEEEEEECCCCCccEeecCcccCCc--cCCCc-C
Confidence 56889999999999854 2333335678999999999999999999999999999999999999999764 99999 8
Q ss_pred cccccCCCCeEEEEEEEcC------------CCCceeeecCcch------hc-ccceeeEEEeCCCCCCCCCCCCCCcEe
Q 008090 108 TQCPIQTGQSYTYNFTITG------------QRGTLLWHAHISW------LR-STLYGPIIILPKRNESYPFQKPHKEIP 168 (578)
Q Consensus 108 ~q~~i~pG~~~~y~f~~~~------------~~Gt~wYH~H~~~------~~-~Gl~G~liV~~~~~~~~p~~~~~~e~~ 168 (578)
+||+|.||++++|+|++.+ ++||||||||.++ +. +||+|+|||+++... .+|+|++
T Consensus 77 t~~~i~pG~~~~Y~f~~~~~~~~~~g~~~~~~~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~~~~-----~~drE~~ 151 (276)
T 3kw8_A 77 NKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGDV-----LPDATHT 151 (276)
T ss_dssp TTCSBCTTCEEEEEEECCCCEECTTSCEECCSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTCC-----CCSEEEE
T ss_pred CcCCCCCCCEEEEEEEcCCccccccCccCCCCCEEEEEecCccccccchhhhhCccEEEEEEecCCCc-----ccccceE
Confidence 9999999999999999843 3799999999964 23 899999999998753 2389999
Q ss_pred EEeeecccCChHHHHHHHHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCce
Q 008090 169 ILFGEWFNVDPEAIISQALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHT 248 (578)
Q Consensus 169 l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~ 248 (578)
+++++ ++|||+.++ ..+.++++.|++|||||+|.+.. .+.||||||.
T Consensus 152 l~l~~-------------------------~~iNG~~~~-------~~p~i~v~~G~~vri~l~N~~~~-~Hp~HlHG~~ 198 (276)
T 3kw8_A 152 IVFND-------------------------MTINNRKPH-------TGPDFEATVGDRVEIVMITHGEY-YHTFHMHGHR 198 (276)
T ss_dssp EEEET-------------------------TEETTCCTT-------CCCCEEEETTCEEEEEEEEESSC-CEEEEETTCC
T ss_pred EEecc-------------------------cccceeccc-------CCCCEEEecCCEEEEEEecCCCc-ceeEEEccce
Confidence 99875 389999753 45789999999999999999974 6679999999
Q ss_pred EEEEeecCCcc----cceEecEEEeCCCceEEEEEEcCC--CCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCC
Q 008090 249 LTVVEADAVYV----KPFDTDKLLITPGQTANVLLRTKP--YFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHP 318 (578)
Q Consensus 249 ~~via~DG~~v----~P~~~d~v~l~pgeR~dv~v~~~~--~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~ 318 (578)
|++++ ||... .+..+|++.|.|||++++.+++++ .+ |.|++|||...-. .....+.+.+...
T Consensus 199 f~v~~-~G~~~~p~~~~~~~Dtv~v~pg~~~~~~~~~~~~~np--G~w~~HCH~~~H~-----~~GM~g~~~V~~~ 266 (276)
T 3kw8_A 199 WADNR-TGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGA--GAWMYHCHVQSHS-----DMGMVGLFLVKKP 266 (276)
T ss_dssp EESSS-SSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCS--EEEEEEECSHHHH-----HTTCEEEEEEECT
T ss_pred eEEec-cCccCCCcccccCCccEEeCCCceEEEEEEeccCCCC--CeEEEECCCchHh-----hCCCeEEEEEeCC
Confidence 99875 76543 246899999999999999999984 23 9999999953211 1234566666653
No 28
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=100.00 E-value=2.8e-44 Score=363.36 Aligned_cols=266 Identities=19% Similarity=0.228 Sum_probs=194.1
Q ss_pred CCccchhhhHHHHHHHHHHHHHHhccccccceeEEEEEEEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEe
Q 008090 1 MGTFHLPSFASMSVLLLGLCFLALLPEFAAGITRHYTFNIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTN 80 (578)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N 80 (578)
||--|++.-++- .++-..+-++..+.+.+|+|+|.+++..... ....++++||++|||+|||++||+|+|+|+|
T Consensus 1 ~~~~~~~~~~~~----~~~p~~~~~p~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~gt~PGP~i~~~~GD~v~v~~~N 74 (299)
T 3t9w_A 1 MGSSHHHHHHSS----GLVPRGSHMPVRAQGTTRRITMYAEKISDEL--YGYGLAPGGATVPGPVLEMWEGDTLEIDLVN 74 (299)
T ss_dssp ------------------------------CCEEEEEEEEEEEETTE--EEEESSTTCCBSSCCCEEEETTCEEEEEEEE
T ss_pred CCcccccccccC----CcCCCccCCCcccCCCEEEEEEEEEecCCCc--eeeeecCCCCCccCceEEEECCeEEEEEEEE
Confidence 566666555553 1222333445566889999999998754222 2234556799999999999999999999999
Q ss_pred CCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEc------------CCCCceeeecCcchhc-------
Q 008090 81 HVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTIT------------GQRGTLLWHAHISWLR------- 141 (578)
Q Consensus 81 ~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~------------~~~Gt~wYH~H~~~~~------- 141 (578)
.+++++||||||+++... +||++ ++||+|.||++++|+|+++ .++||||||||..++.
T Consensus 75 ~l~~~~siH~HG~~~~~~--~DG~~-~~~~~i~PG~t~~Y~~~~~~~~~~~~~~~~~~~~gt~~YH~H~~~~~~~~~~~~ 151 (299)
T 3t9w_A 75 TTDRVLSLHPHGVDYDVN--SDGTL-MNGSAVMPGQTRRYTWRSHVGYRRADGSWAEGTAGYWHYHDHAMGTEHGTEGVL 151 (299)
T ss_dssp CSSSCBCCEESSSBCCGG--GSCCT-TTTCCBCTTCEEEEEEBCCCCEECTTSCEECCCCEEEEEECSSSSSTTCHHHHH
T ss_pred CCCCCccEEeCCcccCCc--cCCCc-cccCccCCCCeEEEEEEeecccccCCCcCCCCCceeEEEecCCcccccchhhhc
Confidence 999999999999998754 99996 7999999999999999974 2689999999986532
Q ss_pred ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHHHHHHHHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEE
Q 008090 142 STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEAIISQALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKV 221 (578)
Q Consensus 142 ~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v 221 (578)
+||+|+|||+++.+. .+|+|+++++++| .+||+..+ ..+.+.+
T Consensus 152 ~GL~G~liV~~~~~~-----~~d~e~~l~~~~~-------------------------~~Ng~~~~-------~~p~l~v 194 (299)
T 3t9w_A 152 KGLYGALVVRRQGDL-----LPKRQFTVVFNDM-------------------------MINNRAHH-------DAPTFEA 194 (299)
T ss_dssp HTCEEEEEEECTTCC-----CCSEEEEEEEETT-------------------------EETTCCTT-------CCCEEEE
T ss_pred ccccceEEEeccccc-----Cccccceeeeeee-------------------------eecCcccc-------cccccee
Confidence 699999999988652 3589999999764 47887642 4578999
Q ss_pred eCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcc---cceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecC
Q 008090 222 KPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYV---KPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYF 298 (578)
Q Consensus 222 ~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v---~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~ 298 (578)
+.|++|||||+|++... +.||||||.|+++..|+... .+..+|++.|.||||++++|.+.+...-|.|++|||...
T Consensus 195 ~~Ge~Vr~~liN~~~~~-HpfHlHGh~F~v~~~g~~~~~~~~~~~~Dtv~v~PGe~~~~~via~~~dnPG~w~~HCHi~~ 273 (299)
T 3t9w_A 195 NLGERVEWIAIGHGSNF-HTFHLHGHRWLDNRTGMRTSEYDPSPLIDIKDLNPGVSFGFQVIAGEGVGPGMWMYHCHVQN 273 (299)
T ss_dssp ETTCEEEEEEEEESSCC-CEEEETTCCEESSSSSSCCSTTCCCCEESEEECCTTCEEEEEEETTTTTCSEEEEEEECSHH
T ss_pred cCCCEEEEEEEeccccc-eeeeEecceEEEEecccccCCcCCCCceeeEEeCCceeEEEEEEEeeCCCCeeEEEEcCCHH
Confidence 99999999999999655 56999999999999988765 345789999999999999987654211199999999632
Q ss_pred CCCCCCCCcceEEEEEEeCC
Q 008090 299 SGMGTIDNSTTAGILEYKHP 318 (578)
Q Consensus 299 ~~~~~~~~~~~~ail~y~~~ 318 (578)
-. .....+++.+...
T Consensus 274 H~-----~~GM~~~f~V~~~ 288 (299)
T 3t9w_A 274 HS-----DMGMAGMFLVRNA 288 (299)
T ss_dssp HH-----HTTCEEEEEEECT
T ss_pred HH-----hcCCeEEEEEECC
Confidence 11 1234566676653
No 29
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=100.00 E-value=9.4e-44 Score=362.28 Aligned_cols=243 Identities=19% Similarity=0.295 Sum_probs=197.7
Q ss_pred ccccceeEEEEEEEEEEeeecCcee-eeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCC
Q 008090 27 EFAAGITRHYTFNIKYHNVTRLCHT-RNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPA 105 (578)
Q Consensus 27 ~~~~~~~~~~~l~~~~~~~~~~g~~-~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~ 105 (578)
+++.+.+|+++|.+++ -++|.. ..++.+||++|||+|||++||+|+|+|+|.+++++||||||+++... +||++
T Consensus 7 ~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~t~PGP~i~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~--~dG~~ 81 (313)
T 3tas_A 7 APAGGEVKRIKLYAER---LGGGQMGYGLEKGKATIPGPLIELNEGDTLHIEFENTMDVPVSLHVHGLDYEIS--SDGTK 81 (313)
T ss_dssp CCCCCCEEEEEEEEEE---CGGGCEEEESSTTCCBSSCCCEEEETTCEEEEEEEECSSSCBCCEESSSBCCGG--GSCST
T ss_pred CCCCceEEEEEEEEEE---cCCCceeeeeecCCccccCCeEEEECCCEEEEEEEECCCCCccEeecCCcCCcc--CCCCc
Confidence 3556788999998764 245533 34567799999999999999999999999999999999999998765 99998
Q ss_pred CccccccCCCCeEEEEEEEc------------CCCCceeeecCcchh-------cccceeeEEEeCCCCCCCCCCCCCCc
Q 008090 106 YVTQCPIQTGQSYTYNFTIT------------GQRGTLLWHAHISWL-------RSTLYGPIIILPKRNESYPFQKPHKE 166 (578)
Q Consensus 106 ~~~q~~i~pG~~~~y~f~~~------------~~~Gt~wYH~H~~~~-------~~Gl~G~liV~~~~~~~~p~~~~~~e 166 (578)
.+||+|.||++++|+|++. .++||||||||..++ .+||+|+|||+++.+. .+|+|
T Consensus 82 -~~~~~i~PG~~~~Y~~~~~~P~~~~~~~~~~~~~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~~~~-----~~d~e 155 (313)
T 3tas_A 82 -QSRSDVEPGGTRTYTWRTHVPGRRADGTWRAGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGDV-----LPDRT 155 (313)
T ss_dssp -TTTCCBCTTCEEEEEEBCCCCEECTTSCEECCSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTCB-----CCSEE
T ss_pred -cccCCcCCCCEEEEEEEeccCCccccccccCCCceEEEEeecCcccccchhhhhccccCceEeeccccc-----ccccc
Confidence 5899999999999999862 367999999998654 2799999999998753 35899
Q ss_pred EeEEeeecccCChHHHHHHHHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcC
Q 008090 167 IPILFGEWFNVDPEAIISQALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIAN 246 (578)
Q Consensus 167 ~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~g 246 (578)
++|+++|| ++||+..+ ..+.+.++.|++|||||+|++. ..+.|||||
T Consensus 156 ~~l~~~d~-------------------------t~Ng~~~~-------~~~~l~v~~Ge~vr~~liN~g~-~~hpfHlHG 202 (313)
T 3tas_A 156 HTIVFNDM-------------------------TINNRPAH-------TGPDFEATVGDRVEFVMITHGE-YYHTFHLHG 202 (313)
T ss_dssp EEEEEETT-------------------------EETTCCTT-------CCCCEEEETTCEEEEEEEEESS-CCEEEEETT
T ss_pred ceeeccch-------------------------hcccCCcc-------cccccccccCCEEEEEEecccc-cceeeeecC
Confidence 99999985 46777542 3467999999999999999995 456799999
Q ss_pred ceEEEEeecCCcc---cceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCC
Q 008090 247 HTLTVVEADAVYV---KPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHP 318 (578)
Q Consensus 247 h~~~via~DG~~v---~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~ 318 (578)
|.|++++.||... .|..+|++.|.||||++++|.+.....-|.|++|||...-. .....+++.++..
T Consensus 203 h~F~v~~~~~~~~~~~~~~~~Dtv~l~Pger~~v~v~a~~~~nPG~w~~HCHi~~H~-----~~GM~~~f~V~~~ 272 (313)
T 3tas_A 203 HRWADNRTGMLTGPDDPSQVIDNKICGPADSFGFQVIAGEGVGAGAWMYHCHVQSHS-----DMGMVGLFLVKKP 272 (313)
T ss_dssp CCEESSTTSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCSEEEEEEECSHHHH-----HTTCEEEEEEECT
T ss_pred CeeEEEEECCccCCCCCCeeeeEEEeCCCcceEEEEEeccCCCCEeEEEEeCChHHH-----HCCCeEEEEEECC
Confidence 9999999998765 47889999999999999999876421119999999963211 1244677777653
No 30
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=100.00 E-value=5.1e-43 Score=360.89 Aligned_cols=268 Identities=17% Similarity=0.184 Sum_probs=209.0
Q ss_pred cceeEEEEEEEEEEeeec-CceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCcc
Q 008090 30 AGITRHYTFNIKYHNVTR-LCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVT 108 (578)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~-~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~ 108 (578)
.+.+++|+|++++..+++ +|..+.+|+|||++|||+|++++||+|+|+|+|. .+++||||+++......||.++++
T Consensus 29 ~~~~~~~~l~~~~~~~~~~~g~~~~~~~~ng~~pgP~i~~~~Gd~v~v~~~N~---~~~~h~Hg~~~~~~~~~~~~~~~~ 105 (333)
T 1mzy_A 29 GPVINEFEMRIIEKEVQLDEDAYLQAMTFDGSIPGPLMIVHEGDYVELTLINP---PENTMPHNIDFHAATGALGGGGLT 105 (333)
T ss_dssp SCCEEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCEEEEETTCEEEEEEEEC---TTCCSCBCCEETTSCSGGGGGGGC
T ss_pred CCcEEEEEEEEEEEEEEcCCCcEEEEEEECCccCCCcEEecCCCEEEEEEEEC---CCCcccccceecCCCCCCCCCcee
Confidence 567899999999999887 4999999999999999999999999999999999 578999999987654455555565
Q ss_pred ccccCCCCeEEEEEEEcCCCCceeeecCcch-----hc-ccceeeEEEeCCCCCCCC--C-CCCCCcEeEEeeecccC--
Q 008090 109 QCPIQTGQSYTYNFTITGQRGTLLWHAHISW-----LR-STLYGPIIILPKRNESYP--F-QKPHKEIPILFGEWFNV-- 177 (578)
Q Consensus 109 q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~-----~~-~Gl~G~liV~~~~~~~~p--~-~~~~~e~~l~~~d~~~~-- 177 (578)
+ |.||++++|+|++ .++||||||||.++ +. +||+|+|||+++...+.+ . ..+|+|++++++||+..
T Consensus 106 ~--i~PG~~~~y~f~~-~~~Gt~~yH~h~~~~~~~~~~~~Gl~G~~iV~~~~~~~~~~~~p~~~d~e~~l~l~D~~~~~~ 182 (333)
T 1mzy_A 106 L--INPGEKVVLRFKA-TRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRDGLKDHEGKPVRYDTVYYIGESDHYIPKD 182 (333)
T ss_dssp C--BCTTEEEEEEEEC-CSCEEEEEECCCSTTHHHHHHHTTCEEEEEEECTTCCBCTTSCBCCCSEEEEEEEEEECCCBC
T ss_pred E--eCCCCEEEEEEEC-CCCEEEEEeecCCcccchhhhhCCCEEEEEEccCcCccccccCCCccchheeeeeeeeccCcc
Confidence 4 9999999999997 78999999999974 44 899999999986542211 1 14689999999999873
Q ss_pred ChH---------HHHHH--HHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcC
Q 008090 178 DPE---------AIISQ--ALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIAN 246 (578)
Q Consensus 178 ~~~---------~~~~~--~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~g 246 (578)
... ..+.. ....+ ..++.++|||+.+++. ..+.+++++|++||||++|.+....+ ..+++
T Consensus 183 ~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ING~~~~~~-----~~~~l~v~~Ger~Rl~n~~~~~~~~~-h~i~~ 253 (333)
T 1mzy_A 183 EDGTYMRFSDPSEGYEDMVAVMDT---LIPSHIVFNGAVGALT-----GEGALKAKVGDNVLFVHSQPNRDSRP-HLIGG 253 (333)
T ss_dssp TTSCBCCCSSHHHHHHHHHHHHTT---TCCSEEEETTSTTTTS-----GGGCEEEETTCEEEEEEEESSSCBCE-EEETC
T ss_pred ccccccccccccccccchhHHhhc---cCCcEEEECCcccccC-----CCcceEecCCCEEEEEECCCCCcccc-EEECC
Confidence 111 01000 01111 3568999999986431 13679999999998887776644444 34789
Q ss_pred ceEEEEeecCCccc-ce-EecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCC
Q 008090 247 HTLTVVEADAVYVK-PF-DTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSN 320 (578)
Q Consensus 247 h~~~via~DG~~v~-P~-~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~ 320 (578)
|.++|++ ||.+++ |. .+|++.|.||||+||+|+++++ |+|+++||..... ......++++|.+...
T Consensus 254 h~~~Vi~-dG~~~~~p~~~~dtv~l~pGer~~v~v~a~~p---G~y~~~ch~~~h~----~~~Gm~~~~~v~~~~~ 321 (333)
T 1mzy_A 254 HGDLVWE-TGKFHNAPERDLETWFIRGGTAGAALYKFLQP---GVYAYVNHNLIEA----VHKGATAHVLVEGEWD 321 (333)
T ss_dssp CEEEEET-TCCTTSCCEEEESBCCBCTTEEEEEEEECCSC---EEEEEEESSHHHH----HTTCCEEEEEEESCCC
T ss_pred CCeEEEe-CCcccCCCccCcceEEECCCceEEEEEEcCCC---EEEEEecChhhhH----hhCCCEEEEEEcCCCC
Confidence 9999999 999985 44 5899999999999999999987 9999999975321 0235578999987543
No 31
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=100.00 E-value=5.3e-42 Score=354.48 Aligned_cols=270 Identities=18% Similarity=0.228 Sum_probs=205.8
Q ss_pred ccceeEEEEEEEEEEeeecC--ceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCC
Q 008090 29 AAGITRHYTFNIKYHNVTRL--CHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAY 106 (578)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~--g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~ 106 (578)
..+.+++|+|++++..++++ |..+.+|+|||++|||+|+|++||+|+|+|+|.+ +++||||++.......||...
T Consensus 34 ~~~~~~~~~l~~~~~~~~~~~dg~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~---~~~~~hg~~~~~~~~~~~~~~ 110 (340)
T 2bw4_A 34 TGPRVVEFTMTIEEKKLVIDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINPD---TNTLLHNIDFHAATGALGGGA 110 (340)
T ss_dssp SSCCEEEEEEEEEEEEEECSTTCCEEEEEEETTBSSCCEEEEETTCEEEEEEEECT---TCCSCBCCEETTSCSGGGGGG
T ss_pred CCCcEEEEEEEEEEEEEEECCCCcEEEEEEECCCCCCCcEEEcCCCEEEEEEEeCC---CCCccCcceeCCcCCCCCCcc
Confidence 35688999999999988855 9999999999999999999999999999999998 779999998776433344444
Q ss_pred ccccccCCCCeEEEEEEEcCCCCceeeecCcch----hc-ccceeeEEEeCCCCCC----CCCCCCCCcEeEEeeecccC
Q 008090 107 VTQCPIQTGQSYTYNFTITGQRGTLLWHAHISW----LR-STLYGPIIILPKRNES----YPFQKPHKEIPILFGEWFNV 177 (578)
Q Consensus 107 ~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~----~p~~~~~~e~~l~~~d~~~~ 177 (578)
+++ |.||++++|+|++ .++||||||||.++ +. +||+|+|||++++... .+. .+|+|++++++||+..
T Consensus 111 ~~~--i~PG~~~~y~~~~-~~~Gt~wyH~h~~~~~~~~~~~Gl~G~~iV~~~~~~~~~~~~p~-~~d~e~~l~l~D~~~~ 186 (340)
T 2bw4_A 111 LTQ--VNPGEETTLRFKA-TKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGLKDEKGQPL-TYDKIYYVGEQDFYVP 186 (340)
T ss_dssp GCC--BCTTEEEEEEEEC-CSCEEEEEECCCTTCHHHHHHTTCEEEEEEECTBCEECTTSCEE-CCSEEEEEEEEEECCC
T ss_pred ceE--eCCCCEEEEEEEC-CCCeEEEEEcCCCCchhhHHhCcCEEEEEEccCcCcccccCCCc-CcceeEEEeeeeeeec
Confidence 444 9999999999998 67999999999874 44 8999999999875321 121 4688999999999873
Q ss_pred --ChH---------HHHHHHHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcC
Q 008090 178 --DPE---------AIISQALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIAN 246 (578)
Q Consensus 178 --~~~---------~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~g 246 (578)
... ..+...... .....++.++|||+.++.. ..+.+++++|+++||++.|.+...++ .++++
T Consensus 187 ~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~iNG~~~~~~-----~~~~l~v~~G~r~Rl~n~~~~~~~~~-~~i~g 259 (340)
T 2bw4_A 187 KDEAGNYKKYETPGEAYEDAVKA-MRTLTPTHIVFNGAVGALT-----GDHALTAAVGERVLVVHSQANRDTRP-HLIGG 259 (340)
T ss_dssp BCTTSCBCCCCSHHHHHHHHHHH-HHTTCCSEEEETTSTTTTS-----GGGCEEEETTCEEEEEEEESSSCBCE-EEETC
T ss_pred cccCCcccccccccccccchhhH-hhcCCCCEEEECCccCCcc-----CCCceEcCCCCEEEEEECCCCCccce-EEecC
Confidence 111 111110000 0012458999999986321 14789999999888777776644444 45899
Q ss_pred ceEEEEeecCCcc-cce-EecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCC
Q 008090 247 HTLTVVEADAVYV-KPF-DTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSN 320 (578)
Q Consensus 247 h~~~via~DG~~v-~P~-~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~ 320 (578)
|.|+|++ ||.++ .|. .+|++.|.||||+||+|+++++ |+|+++||..... ......++++|.+...
T Consensus 260 h~~~Vi~-dG~~~~~p~~~~dtv~l~pGer~~v~v~~~~p---G~y~~~~h~~~~h----~~~Gm~~~~~V~~~~~ 327 (340)
T 2bw4_A 260 HGDYVWA-TGKFRNPPDLDQETWLIPGGTAGAAFYTFRQP---GVYAYVNHNLIEA----FELGAAGHFKVTGEWN 327 (340)
T ss_dssp CEEEEET-TCCTTSCCEEEESCCCBCTTEEEEEEEECCSC---EEEEEEESSHHHH----HTTSCEEEEEEESCCC
T ss_pred cceEEeC-CCcccCCccccceEEEeCCCceEEEEEECCCC---eeeEEEcCchHHH----HhCCCEEEEEECCCCc
Confidence 9999997 99988 453 5899999999999999999996 9999999975211 0124568899987543
No 32
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=100.00 E-value=1.2e-41 Score=351.21 Aligned_cols=269 Identities=22% Similarity=0.262 Sum_probs=202.8
Q ss_pred cceeEEEEEEEEEEeeec--CceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCc
Q 008090 30 AGITRHYTFNIKYHNVTR--LCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYV 107 (578)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~--~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~ 107 (578)
.+.+++|+|++++..+++ +|..+.+|+|||++|||+|+|++||+|+|+|+|.+. ++||||++.....+.||.+.+
T Consensus 29 ~~~~~~~~l~~~~~~~~~~~dg~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~---~~~~h~~~~h~~~~~~~~~~~ 105 (336)
T 1oe1_A 29 GPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPAT---NAMPHNVDFHGATGALGGAKL 105 (336)
T ss_dssp CCCEEEEEEEEEEEEEECSTTCCEEEEEEETTBSSCCCEEEETTCEEEEEEEECTT---CCSCBCCEETTSCSGGGGGGG
T ss_pred CCcEEEEEEEEEEEEEEECCCCcEEEEEEECCccCCCeEEEcCCCEEEEEEEcCCC---CCccccceECCCCCCCCCcce
Confidence 457899999999988774 499999999999999999999999999999999973 456666666555556776666
Q ss_pred cccccCCCCeEEEEEEEcCCCCceeeecCcch----hc-ccceeeEEEeCCCCCCCCC---CCCCCcEeEEeeecccCCh
Q 008090 108 TQCPIQTGQSYTYNFTITGQRGTLLWHAHISW----LR-STLYGPIIILPKRNESYPF---QKPHKEIPILFGEWFNVDP 179 (578)
Q Consensus 108 ~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~p~---~~~~~e~~l~~~d~~~~~~ 179 (578)
++ |.||++++|+|++ .++||||||||.++ +. +||+|+|||++++....+. ..+|+|++|+++||++...
T Consensus 106 ~~--i~pG~~~~y~f~~-~~~Gt~~yH~h~~~~~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~~D~e~~l~~~D~~~~~~ 182 (336)
T 1oe1_A 106 TN--VNPGEQATLRFKA-DRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKG 182 (336)
T ss_dssp CC--BCTTEEEEEEEEC-CSCEEEEEECCCTTCHHHHHHTTCEEEEEEECTTCCBCTTSCBCCCSEEEEEEEEEECCCBC
T ss_pred EE--eCCCCEEEEEEEC-CCCeEEEEecCCCCchhHHHhCCCeEEEEEecCcCCcccccCcccCCceeEeeeeeeeeccc
Confidence 65 9999999999998 68999999999864 33 8999999999875422111 1468999999999987411
Q ss_pred --HH---------HHHHHHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEE-EcCc
Q 008090 180 --EA---------IISQALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFS-IANH 247 (578)
Q Consensus 180 --~~---------~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~-l~gh 247 (578)
.. .+...... .....++.++|||+.+.+.+ .+.+++++|++||| +|++..+.+.++ ++||
T Consensus 183 ~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~liNG~~~~~~~-----~~~l~v~~GervRl--in~~~~~~~~~~~i~gh 254 (336)
T 1oe1_A 183 PDGKYKDYATLAESYGDTVQV-MRTLTPSHIVFNGKVGALTG-----ANALTAKVGETVLL--IHSQANRDTRPHLIGGH 254 (336)
T ss_dssp TTSSBCCCSSTGGGHHHHHHH-HHTTCCSEEEETTSTTTTSG-----GGCEEEETTCEEEE--EEEESSSCBCEEETTCC
T ss_pred cCCceeecccccccccchhhH-hhcCCCCEEEECCeeccCCC-----CcceEcCCCCEEEE--EecCCCCccceEEECCc
Confidence 00 00000000 00124689999999864311 36799999998776 555555544444 5999
Q ss_pred eEEEEeecCCcccce--EecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCC
Q 008090 248 TLTVVEADAVYVKPF--DTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSN 320 (578)
Q Consensus 248 ~~~via~DG~~v~P~--~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~ 320 (578)
.++|++ ||.+++|. .++++.|.||||+||+|+++++ |.|+++||..... ......++++|++...
T Consensus 255 ~~~Vi~-DG~~~~p~~~~~dtv~i~pGer~dvlv~~~~p---G~y~~~~h~~~~~----~~~G~~~~~~V~~~~~ 321 (336)
T 1oe1_A 255 GDWVWE-TGKFANPPQRDLETWFIRGGSAGAALYTFKQP---GVYAYLNHNLIEA----FELGAAGHIKVEGKWN 321 (336)
T ss_dssp EEEEET-TCCTTSCCEEEESBCCBCTTEEEEEEEECCSC---EEEEEEESSHHHH----HTTSCEEEEEEESCCC
T ss_pred CceEeC-CCcCcCCccccceEEEECCCCcEEEEEEcCCC---ceEEEEechhhcc----ccCCCeEEEEECCCCC
Confidence 999997 99998653 4799999999999999999997 9999999964321 0235679999987543
No 33
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=100.00 E-value=4.3e-40 Score=367.83 Aligned_cols=250 Identities=17% Similarity=0.199 Sum_probs=186.4
Q ss_pred ccceeEEEEEEEEEEeeecCc--------------e--eeeEEEE----------------CCCCCCcEEEEecCCEEEE
Q 008090 29 AAGITRHYTFNIKYHNVTRLC--------------H--TRNIISV----------------NGQFPGPSLVAREGDRVLI 76 (578)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~g--------------~--~~~~~~~----------------Ng~~pgP~i~v~~Gd~v~v 76 (578)
+.+++|+|-+-|++..+.... + +...+.| ++++|||+|+|++||+|+|
T Consensus 2 ~~~~~r~y~i~a~e~~w~y~~~~~~~~~~~~~~~~~y~k~v~~~ytd~~f~~~~~~~~~~~~~~~pGP~I~~~~Gd~v~v 81 (647)
T 1sdd_B 2 NTGNRKYYYIAAEEISWDYSKFVQSDDVDYVPEDTVYKKVVFRKYLDSTFTKLDPQGEYEEHLGILGPVIRAEVDDVIQV 81 (647)
T ss_dssp CCCCEEEEEEEEEEEEEETTTTC--------CCCCEEEEEEEEEESSTTCCSBCCCCSTTGGGTTSCCCEEEETTCEEEE
T ss_pred CCCCeEEEEEEEEEEEEeCCCCCcccccCccccCCeEeEEEEEEecCCcccccccCCCcccccCCcCceEEEeCCCEEEE
Confidence 357899999999999888651 1 1122344 3478999999999999999
Q ss_pred EEEeCCCCceeEEEeeeeeccCCCCCCCCCcc--------ccccCCCCeEEEEEEEcCC-----CC----ceeeecCcch
Q 008090 77 KVTNHVSNNVTIHWHGVRQVTSGWADGPAYVT--------QCPIQTGQSYTYNFTITGQ-----RG----TLLWHAHISW 139 (578)
Q Consensus 77 ~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~--------q~~i~pG~~~~y~f~~~~~-----~G----t~wYH~H~~~ 139 (578)
+|+|.++.+++|||||+++... +||+|+++ ||+|+||++++|+|+++++ +| |||||||.+.
T Consensus 82 ~~~N~l~~~~siH~HGl~~~~~--~DG~~~~~~~~~~~~~~~~I~PG~~~tY~f~~~~~~gp~~~G~~c~T~wYHsH~~~ 159 (647)
T 1sdd_B 82 RFKNLASRPYSLHAHGLSYEKS--SEGKTYEDDSPEWFKEDNAIQPNKTYTYVWHATTRSGPENPGSACRAWAYYSAVNP 159 (647)
T ss_dssp EECCCSSSCBCCEEETCC-----------------------CCBCTTCCEECCEECCTTTSCCSSSCSEEEEEEECCSSH
T ss_pred EEEECCCCceEEecCcceeCCC--CCCccccCCCCcccccCcccCCCCeEEEEEECCcccCCCCCCCCceEEEEccCCCC
Confidence 9999999999999999998754 99999876 9999999999999998654 57 9999999975
Q ss_pred --hc-ccceeeEEEeCCCCCCC--CCCCCCCcEeEEee------ecccCChHHHHHHHHhcCCCCCCCceEEEcCccCCC
Q 008090 140 --LR-STLYGPIIILPKRNESY--PFQKPHKEIPILFG------EWFNVDPEAIISQALQTGAGPNVSDAYTINGLPGPL 208 (578)
Q Consensus 140 --~~-~Gl~G~liV~~~~~~~~--p~~~~~~e~~l~~~------d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~ 208 (578)
+. +||+|+|||+++..... ..+..++|++|+++ ||+.+........... ......++.++|||+.+
T Consensus 160 ~~q~~~GL~G~lIV~~~~~~~~~~~~~~~~~e~~l~l~~~d~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~iNG~~~-- 236 (647)
T 1sdd_B 160 EKDIHSGLIGPLLICRKGTLDKETNMPVDMREFVLLFMVFDEKKSWYYDKKPTRSWRRAS-SEVKNSHEFHAINGMIY-- 236 (647)
T ss_dssp HHHHTTTCEEEEEEECTTSSCTTSCCCSSCCEEEEEEEEEEGGGSSCCC----------------CCCEEEEETTBSS--
T ss_pred cccccccCccCEEEeeCCCcccccCCCCcceeEEEEEEeecCccccccccCcccccccCC-cchhhcCceeccCCEec--
Confidence 33 89999999999864321 11234689999999 7777654321000000 01123468899999974
Q ss_pred cccCCCCeeEEEEeCCcEEEEEEEecCCCC-eEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCC
Q 008090 209 YNCSSKDTYKLKVKPGKTYLLRLINAALND-ELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPN 287 (578)
Q Consensus 209 ~~~~~~~~~~l~v~~G~~~rlRliN~~~~~-~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~ 287 (578)
..+.+++++|++|||||+|++... .+.||+|||.|++++.|| ..+|++.|.||||+||+|+++++
T Consensus 237 ------~~p~l~v~~G~~vrlrliN~~~~~~~h~~hlhG~~f~vi~~d~-----~~~d~v~l~pg~r~~v~~~~~~p--- 302 (647)
T 1sdd_B 237 ------NLPGLRMYEQEWVRLHLLNLGGSRDIHVVHFHGQTLLENGTQQ-----HQLGVWPLLPGSFKTLEMKASKP--- 302 (647)
T ss_dssp ------CCCCCEEETTCEEEEEEEECCCTTCCEEEEETTCCEEECSSSC-----EEESSEEECTTEEEEEEEECCSS---
T ss_pred ------CCCCeEEcCCCEEEEEEEeCCCCCcceeEEEcCcEEEEecCCC-----cccceEEECCCeEEEEEEEeccc---
Confidence 236799999999999999999764 788999999999999885 57899999999999999999987
Q ss_pred CceEEEEeec
Q 008090 288 ATFFMQARPY 297 (578)
Q Consensus 288 g~y~l~~~~~ 297 (578)
|.|++|||..
T Consensus 303 G~w~~hch~~ 312 (647)
T 1sdd_B 303 GWWLLDTEVG 312 (647)
T ss_dssp EEEEEECCCH
T ss_pred eEeecccCcc
Confidence 9999999963
No 34
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=100.00 E-value=4.9e-41 Score=341.32 Aligned_cols=212 Identities=17% Similarity=0.266 Sum_probs=157.7
Q ss_pred EEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCC------cc--ccccCCCCeEEEEEEEc
Q 008090 54 IISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAY------VT--QCPIQTGQSYTYNFTIT 125 (578)
Q Consensus 54 ~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~------~~--q~~i~pG~~~~y~f~~~ 125 (578)
..++| ++|||+|+|++||+|+|+|+|.++++++|||||++.... +||+|. ++ ||+|+||++++|+|+++
T Consensus 51 ~~~~n-~~pGP~I~v~~Gd~v~v~~~N~l~~~~siH~HGl~~~~~--~dG~~~~dg~~~~~~~~~~I~PG~~~~Y~f~~~ 127 (306)
T 1sdd_A 51 QSRTS-GLLGPTLYAEVGDIMKVHFKNKAHKPLSIHAQGIKYSKF--SEGASYSDHTLPMEKMDDAVAPGQEYTYEWIIS 127 (306)
T ss_dssp CCSSC-CSCCCCEEEETTCEEEEEEEECSSSCBCCEEESSCCCTT--TSCCCSCCCCCHHHHTTTCBCTTCEEEEEEECC
T ss_pred ccccC-CccCCEEEEeCCCEEEEEEEECCCCcccEeecceecccc--cCCCccCCCCcccccCCCccCCCCeEEEEEEeC
Confidence 34578 689999999999999999999999999999999996544 666654 33 79999999999999985
Q ss_pred CCC---------CceeeecCcch--hc-ccceeeEEEeCCCCCC-CCC-CCCCCcEeEEeeecccCChHHHHHHHHhcCC
Q 008090 126 GQR---------GTLLWHAHISW--LR-STLYGPIIILPKRNES-YPF-QKPHKEIPILFGEWFNVDPEAIISQALQTGA 191 (578)
Q Consensus 126 ~~~---------Gt~wYH~H~~~--~~-~Gl~G~liV~~~~~~~-~p~-~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~ 191 (578)
+++ ||||||||... +. +||+|+|||+++.+.. .+. ...|+|++++++||..... .
T Consensus 128 ~~~gp~~~d~~~GT~wYHsH~~~~~q~~~GL~G~liV~~~~~~~~~~~~~~~d~e~~l~~~d~d~~~~---------~-- 196 (306)
T 1sdd_A 128 EHSGPTHDDPPCLTHIYYSYVNLVEDFNSGLIGPLLICKKGTLTEDGTQKMFEKQHVLMFAVFDESKS---------W-- 196 (306)
T ss_dssp GGGSCCSSSCSEEEEEEECCSSSHHHHHTTCCEEEEEECTTCBCTTSSBSSSCCCCCCBCCEEETTSS---------S--
T ss_pred CccCCCCCCCCceEEEEeccCCchhhhccCceEEEEEccCCCCCccCCcCcccceEEEEEEecccccc---------c--
Confidence 443 69999999876 33 8999999999875321 111 1357899999999743211 0
Q ss_pred CCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCC-CeEEEEEcCceEEEEeecCCcccceEecEEEeC
Q 008090 192 GPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALN-DELFFSIANHTLTVVEADAVYVKPFDTDKLLIT 270 (578)
Q Consensus 192 ~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~-~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~ 270 (578)
....++.++|||+.+. ..+.+++++|++|||||+|++.. ..+.||||||.|.+ || ..+|++.|.
T Consensus 197 ~~~~~~~~~ING~~~~-------~~p~l~v~~G~~vrlrliN~g~~~~~h~~hlhG~~~~~---dG-----~~~dtv~l~ 261 (306)
T 1sdd_A 197 NQTSSLMYTVNGYVNG-------TMPDITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQ---NH-----HKISAITLV 261 (306)
T ss_dssp SCCCCEEECSSSCCSS-------CCCCCCCCCC------BBCCCSSSCEECCBCSSTTCEE---TT-----EECSCCCEE
T ss_pred ccCCCcceeeCCEecC-------CCcceEEcCCCEEEEEEEeCCCCCccEEEEECCcEeee---CC-----EEcceEEEC
Confidence 1123578999999752 24678999999999999999976 56779999999986 77 458999999
Q ss_pred CCceEEEEEEcCCCCCCCceEEEEeec
Q 008090 271 PGQTANVLLRTKPYFPNATFFMQARPY 297 (578)
Q Consensus 271 pgeR~dv~v~~~~~~~~g~y~l~~~~~ 297 (578)
||||+||+|+++++ |.|+++||..
T Consensus 262 pger~~v~~~~~~p---G~~~~hch~~ 285 (306)
T 1sdd_A 262 SATSTTANMTVSPE---GRWTIASLIP 285 (306)
T ss_dssp TTCCBC-----------CCCCCBCCST
T ss_pred CCcEEEEEEEcCCC---eEEEEEeCCh
Confidence 99999999999987 9999999964
No 35
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=100.00 E-value=4.2e-39 Score=331.44 Aligned_cols=236 Identities=19% Similarity=0.283 Sum_probs=189.3
Q ss_pred cceeEEEEEEEEEEeeecCceeee-EEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCcc
Q 008090 30 AGITRHYTFNIKYHNVTRLCHTRN-IISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVT 108 (578)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~g~~~~-~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~ 108 (578)
.+++++|+|++++. ++|.... .+.+||++|||+|+|++||+|+|+|+|.++.+++|||||+.+.. ++||++ ++
T Consensus 45 ~g~~~~~~l~~~~~---~~~~~~~~~~~~ng~~pGP~I~v~~Gd~v~v~~~N~l~~~~sih~HG~~~~~--~~DG~~-~t 118 (343)
T 3cg8_A 45 GGEVRHLKMYAEKL---ADGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYEI--SSDGTA-MN 118 (343)
T ss_dssp CCCEEEEEEEEEEC---GGGCEEEESSTTCCBSSCCCEEEETTCEEEEEEEECSSSCBCCEESSSBCCG--GGSCCT-TT
T ss_pred CCeEEEEEEEEEEc---cCCeeeeeeecCCCCccCCEEEEECCCEEEEEEEECCCCCeeEEecCcccCC--cCCCcc-cc
Confidence 35679999999875 2443221 12358999999999999999999999999999999999999873 499999 89
Q ss_pred ccccCCCCeEEEEEEEcC------------CCCceeeecCcch------hc-ccceeeEEEeCCCCCCCCCCCCCCcEeE
Q 008090 109 QCPIQTGQSYTYNFTITG------------QRGTLLWHAHISW------LR-STLYGPIIILPKRNESYPFQKPHKEIPI 169 (578)
Q Consensus 109 q~~i~pG~~~~y~f~~~~------------~~Gt~wYH~H~~~------~~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l 169 (578)
||+|.||++++|+|++.+ ++|+||||||..+ +. +||+|++||+++.+. .+|+|+++
T Consensus 119 ~~~I~PG~~~~y~f~~~~pg~~~~g~~~~~~~Gt~~YH~h~~~~~~~~~~~~~Gl~G~~iV~~~~~~-----~pd~e~~l 193 (343)
T 3cg8_A 119 KSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGDV-----LPDATHTI 193 (343)
T ss_dssp TCSBCTTCEEEEEEECCCCEECTTSCEECCSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTCC-----CCSEEEEE
T ss_pred cccccCCCEEEEEEEeCCCCcccccccCCCCceEEEEecCccccccchhhhhcCCeEEEEEecCCCC-----CCCceEEE
Confidence 999999999999999732 3589999999742 33 899999999988642 24799999
Q ss_pred EeeecccCChHHHHHHHHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceE
Q 008090 170 LFGEWFNVDPEAIISQALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTL 249 (578)
Q Consensus 170 ~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~ 249 (578)
+++|| +|||+.++ ..+.+.++.||+|||||+|.+. ..+.||||||.|
T Consensus 194 ~~~d~-------------------------~iNG~~~~-------~~~~l~v~~Ge~vri~l~N~g~-~~HpfHlHGh~f 240 (343)
T 3cg8_A 194 VFNDM-------------------------TINNRKPH-------TGPDFEATVGDRVEIVMITHGE-YYHTFHMHGHRW 240 (343)
T ss_dssp EEETT-------------------------EETTCCTT-------CCCCEEEETTCEEEEEEEEESS-CCEEEEETTCCE
T ss_pred Ecccc-------------------------eecccCCC-------CCccEEeCCCCEEEEEEEcCCc-cccccEecCcEE
Confidence 98864 79999752 3468999999999999999996 456699999999
Q ss_pred EEEeecCCccc----ceEecEEEeCCCceEEEEEEcC---CCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCC
Q 008090 250 TVVEADAVYVK----PFDTDKLLITPGQTANVLLRTK---PYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHP 318 (578)
Q Consensus 250 ~via~DG~~v~----P~~~d~v~l~pgeR~dv~v~~~---~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~ 318 (578)
+++ .||.+.. +..+|++.|.|||+++++++++ ++ |.|++|||...-. .....+.+.+...
T Consensus 241 ~v~-~~G~~~~p~~~~~~~Dtv~v~PG~~~~v~~~~~~~~~p---G~w~~HCHi~~H~-----~~GM~g~~~V~~~ 307 (343)
T 3cg8_A 241 ADN-RTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGA---GAWMYHCHVQSHS-----DMGMVGLFLVKKP 307 (343)
T ss_dssp ESS-SSSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCS---EEEEEEECSHHHH-----HTTCEEEEEEECT
T ss_pred EEe-ccCcccCCCCcccceeeEEeCCCCEEEEEEEECCCCCC---eeEEEeCCCHHHH-----hccCcEEEEEecC
Confidence 997 4675442 4678999999999999999974 44 9999999953211 1245677777653
No 36
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=100.00 E-value=3.7e-38 Score=338.01 Aligned_cols=259 Identities=19% Similarity=0.265 Sum_probs=209.1
Q ss_pred ceeEEEEEEEEEEeeec-CceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCC--CceeEEEeeeeeccCCCCCCCCCc
Q 008090 31 GITRHYTFNIKYHNVTR-LCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVS--NNVTIHWHGVRQVTSGWADGPAYV 107 (578)
Q Consensus 31 ~~~~~~~l~~~~~~~~~-~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~--~~~siH~HG~~~~~~~~~DG~~~~ 107 (578)
+.++.|+|++++....+ +|....+|+|||++|||+|+|++||+++|+|.|.+. ..++|||||+.. +||+|..
T Consensus 161 ~~~~~~~l~~~~~~~~~~~g~~~~~~~~NG~~pgp~i~v~~G~~v~~rl~N~~~~~~~~~ih~Hg~~~-----~DG~~~~ 235 (447)
T 2dv6_A 161 AKTVRIDLETVEVKGQLDDNTTYTYWTFNGKVPGPFLRVRVGDTVELHLKNHKDSLMVHSVDFHGATG-----PGGAAAF 235 (447)
T ss_dssp CCEEEEEEEEEEEEEEEETTEEEEEEEETTBBSCCCEEEETTCEEEEEEEECTTCSSCBCCEETTCCS-----GGGGGGG
T ss_pred CcEEEEEEEEEEEEEeccCCceeEEEEECCccCCCeEEecCCCEEEEEEEeCCCCceeEEEeeccccC-----CCCCCcc
Confidence 45678888888777666 588889999999999999999999999999999984 689999999752 7998765
Q ss_pred cccccCCCCeEEEEEEEcCCCCceeeecCcc---hhc-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCChHH--
Q 008090 108 TQCPIQTGQSYTYNFTITGQRGTLLWHAHIS---WLR-STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDPEA-- 181 (578)
Q Consensus 108 ~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~---~~~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~~~-- 181 (578)
++ |.||++++|.|++ .++|+||||||.. .+. .||+|+|+|+++.. . +..|+|++++++||+......
T Consensus 236 ~~--i~pG~~~~~~~~~-~~~G~~~yh~h~~~~~~~~~~Gl~g~l~v~~~~~--~--P~~d~~~~~~~~~~~~~~~~~~~ 308 (447)
T 2dv6_A 236 TQ--TDPGEETVVTFKA-LIPGIYVYHCATPSVPTHITNGMYGLLLVEPEGG--L--PQVDREFYVMQGEIYTVKSFGTS 308 (447)
T ss_dssp CC--BCTTCEEEEEEEC-CSCEEEEEECCSSSHHHHHHTTCEEEEEEECTTC--S--CCCSEEEEEEEEEECBSSCTTCC
T ss_pred EE--eCCCCEEEEEEEC-CCCeEEEEEeCCCChHHHHhCCCEEEEEEeCCCC--C--CCCCeeEEEEecccccCCccccc
Confidence 43 9999999999997 6789999999974 233 89999999998653 2 246889999999998653210
Q ss_pred -----HHHHHHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecC
Q 008090 182 -----IISQALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADA 256 (578)
Q Consensus 182 -----~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG 256 (578)
.+.... + ..++.++|||+.+++. ....+.+++|++|||||+|++....+.||||||.|+||+.||
T Consensus 309 g~~~~~~~~~~--~---~~~~~~~iNG~~~~~~-----~~~~~~v~~g~~vrlrliN~~~~~~h~~hlhGh~f~vv~~dG 378 (447)
T 2dv6_A 309 GEQEMDYEKLI--N---EKPEYFLFNGSVGSLT-----RSHPLYASVGETVRIFFGVGGPNFTSSFHVIGEIFDHVYSLG 378 (447)
T ss_dssp EECCBBHHHHH--T---TCCSEEEETTSTTCCC-----CCCCEEECTTCEEEEEEEEEESSCCEEEEEETCCEEEECGGG
T ss_pred ccccCChHHhh--c---cCCCEEEECCcccCCC-----CCcceEECCCCEEEEEEEeCCCCceEeEEEcCcEEEEEEcCC
Confidence 001111 1 2357899999987532 124689999999999999999877888999999999999999
Q ss_pred Cccc-ce-EecEEEeCCCceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCC
Q 008090 257 VYVK-PF-DTDKLLITPGQTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPS 319 (578)
Q Consensus 257 ~~v~-P~-~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~ 319 (578)
++++ |. .+|++.|.||||++|+|+++++ |.|++|||..... .....++++|++..
T Consensus 379 ~~~~~p~~~~dtv~l~pg~r~~i~~~~~~p---G~~~~hch~~~h~-----~~Gm~~~~~v~~~~ 435 (447)
T 2dv6_A 379 SVVSPPLIGVQTVSVPPGGATIVDFKIDRA---GRYILVDHALSRL-----EHGLVGFLNVDGPK 435 (447)
T ss_dssp CSSSCCEEEESEEEECTTEEEEEEEECCSC---EEEEEEESSGGGG-----GGTCCEEEEECSCS
T ss_pred cccCCCcccccEEEECCCcEEEEEEECCCC---EEEEEEecCcCcc-----ccCCEEEEEEeCCC
Confidence 9985 44 6899999999999999999987 9999999965332 23457999998753
No 37
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=100.00 E-value=1.3e-39 Score=366.08 Aligned_cols=248 Identities=13% Similarity=0.121 Sum_probs=194.9
Q ss_pred ccceeEEEEEEEEEEeee--cCce---------------e--eeEEEE-----CC-----------CCCCcEEEEecCCE
Q 008090 29 AAGITRHYTFNIKYHNVT--RLCH---------------T--RNIISV-----NG-----------QFPGPSLVAREGDR 73 (578)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~--~~g~---------------~--~~~~~~-----Ng-----------~~pgP~i~v~~Gd~ 73 (578)
..+.+|+|.|.|++..+. +++. . ...+.| ++ ++|||+|||++||+
T Consensus 129 ~~g~~r~y~i~a~e~~wdyap~~~~~~~~~~~~~~~g~~y~k~~~~~y~~~~f~~~~~~~~~~~~l~~pGP~Ir~~~GD~ 208 (770)
T 2r7e_B 129 FQKKTRHYFIAAVERLWDYGMSSSPHVLRNRAQSGSVPQFKKVVFQEFTDGSFTQPLYRGELNEHLGLLGPYIRAEVEDN 208 (770)
T ss_dssp CCCCCEEEEEEEEECCCCCCSCCCCTTTTSSCCCCCCCCCCCEEEEECSSSCTTTTCCCCSTTTTCCSCCCCCCCCSSSC
T ss_pred CCCCEEEEEEEEEEEEEeecCCCcccccccccccccccceeeEEEEEeccCceeccccccccccccCCCCCeEEEEcCCE
Confidence 568999999999998754 4432 1 222333 23 68999999999999
Q ss_pred EEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcC---------CCCceeeecCcchh--c-
Q 008090 74 VLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITG---------QRGTLLWHAHISWL--R- 141 (578)
Q Consensus 74 v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~---------~~Gt~wYH~H~~~~--~- 141 (578)
|+|+|+|.++++++|||||+++.... .||+++ +||+|+||++++|+|++++ ++||||||||.+.. .
T Consensus 209 v~v~~~N~l~~~~siH~HG~~~~~~~-~dG~~~-~~~~I~PG~~~tY~f~~~~~~gp~~~d~~~Gt~wYHsh~~~~~q~~ 286 (770)
T 2r7e_B 209 IMVTFRNQASRPYSFYSSLISYEEDQ-RQGAEP-RKNFVKPNETKTYFWKVQHHMAPTKDEFDCKAWAYSSDVDLEKDVH 286 (770)
T ss_dssp EEEEEECCSSSCCCCCBTTCCCCCCS-SSCTTT-TSSCCCSSCEEEEECCCCSSSSCCSSCCSEEEEEECCCSSSSHHHH
T ss_pred EEEEEEECCCCCcceeeccccccccc-CCCCcC-ccCccCCCCeEEEEEEecCccCCccCCCCCeeEEeeccCCcHHHHh
Confidence 99999999999999999999998874 269998 9999999999999999854 89999999999874 3
Q ss_pred ccceeeEEEeCCCCCCC--CCCCCCCcEeEEeee------cccCChHHHHHHHHh-cC----C---CCCCCceEEEcCcc
Q 008090 142 STLYGPIIILPKRNESY--PFQKPHKEIPILFGE------WFNVDPEAIISQALQ-TG----A---GPNVSDAYTINGLP 205 (578)
Q Consensus 142 ~Gl~G~liV~~~~~~~~--p~~~~~~e~~l~~~d------~~~~~~~~~~~~~~~-~g----~---~~~~~~~~liNG~~ 205 (578)
+||+|+|||+++..... .....++|++|++++ |+.+..... ... .. . .....+.++|||+.
T Consensus 287 ~GL~G~liV~~~~~~~~~~~~~~~d~E~vl~~~~~de~~swy~~~~~~~---~~~~p~~~~~~d~~~~~~~~~~~ING~~ 363 (770)
T 2r7e_B 287 SGLIGPLLVCHTNTLNPAHGRQVTVQEFALFFTIFDETKSWYFTENMER---NCRAPCNIQMEDPTFKENYRFHAINGYI 363 (770)
T ss_dssp TSCCEEEEEECSTTSCSSSCCCCSSEEEECCCCEECCSSSSCTTGGGSS---CSCCSSCCCSSSSSSTTTSCEECTTSCT
T ss_pred CCceeeEEECCCcccccccCCCccceEEEEEEeecCccccchhccchhh---cccCccccccCCccccccCCccccCCcc
Confidence 89999999999864321 112357899988754 444322100 000 00 0 00123568999997
Q ss_pred CCCcccCCCCeeEEEEeCCcEEEEEEEecCCCC-eEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCC
Q 008090 206 GPLYNCSSKDTYKLKVKPGKTYLLRLINAALND-ELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPY 284 (578)
Q Consensus 206 ~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~-~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~ 284 (578)
+. ..+.+.+++|++|||||+|++... .+.||||||.|+|++.||. .+|++.|.||||++|+|+++++
T Consensus 364 ~~-------~~~~l~v~~Ge~vr~rliN~g~~~~~H~fHlhGh~f~Vv~~dg~-----~~Dtv~l~Pg~~~~v~~~ad~p 431 (770)
T 2r7e_B 364 MD-------TLPGLVMAQDQRIRWYLLSMGSNENIHSIHFSGHVFTVRKKEEY-----KMALYNLYPGVFETVEMLPSKA 431 (770)
T ss_dssp TT-------TCCCCCCCSSSCEEEECCCCCSSSCCCEEEBSSCCEECCSSSCC-----EESEEECCTTCCCEEEECCSSC
T ss_pred CC-------CCCCeEEeCCCEEEEEEEeCCCCcceEEEEEcCCEEEEEecCCc-----eeeEEEECCCeEEEEEEEeCCC
Confidence 51 346789999999999999998653 6789999999999999973 8999999999999999999987
Q ss_pred CCCCceEEEEee
Q 008090 285 FPNATFFMQARP 296 (578)
Q Consensus 285 ~~~g~y~l~~~~ 296 (578)
|.|++|||.
T Consensus 432 ---G~w~~hcH~ 440 (770)
T 2r7e_B 432 ---GIWRVECLI 440 (770)
T ss_dssp ---BCCCBCCCS
T ss_pred ---CceEEEecc
Confidence 999999996
No 38
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=100.00 E-value=2.6e-36 Score=338.69 Aligned_cols=217 Identities=22% Similarity=0.269 Sum_probs=168.7
Q ss_pred CCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCC-----CCCCccccccCCCCeEEEEEEEcCCCC----
Q 008090 59 GQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWAD-----GPAYVTQCPIQTGQSYTYNFTITGQRG---- 129 (578)
Q Consensus 59 g~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~D-----G~~~~~q~~i~pG~~~~y~f~~~~~~G---- 129 (578)
..+|||+||+++||+|+|+|+|.++.++||||||+.+. .+|+| |+++++||+|.||++++|+|++++++|
T Consensus 447 ~g~pGP~Ir~~~GD~v~v~~~N~l~~~~siHwHGl~~~-~~~~DG~~~~G~~~~~~~~I~PG~t~tY~f~~~~~agPg~~ 525 (742)
T 2r7e_A 447 SGILGPLLYGEVGDTLLIIFKNQASRPYNIYPHGITDV-RPLYSRRLPKGVKHLKDFPILPGEIFKYKWTVTVEDGPTKS 525 (742)
T ss_dssp SCSCCCCCCCBTTCEEECCEECCSSSCBCCEETTCSEE-CCTTCSCCSSSCSSTTTSCCBSSCEECCEEECCSTTSCCSS
T ss_pred cCCCCCeEEEECCCEEEEEEEeCCCCCcCEEecccccC-CcccccccCCCCcccccccCCCCCeEEEEEEeccccCCccc
Confidence 36799999999999999999999999999999999985 55566 456778999999999999999965544
Q ss_pred -----ceeeecCcchhc---ccceeeEEEeCCCCCC-CC-CCCCCCcEeEEeee------cccCChHHHHHHHHhc-CCC
Q 008090 130 -----TLLWHAHISWLR---STLYGPIIILPKRNES-YP-FQKPHKEIPILFGE------WFNVDPEAIISQALQT-GAG 192 (578)
Q Consensus 130 -----t~wYH~H~~~~~---~Gl~G~liV~~~~~~~-~p-~~~~~~e~~l~~~d------~~~~~~~~~~~~~~~~-g~~ 192 (578)
|||||||.+.+. +||+|+|||+++.... .+ ....|+|++|++++ |+..... ...... ...
T Consensus 526 d~~~gT~wYHsH~~~~~q~~~GL~G~lIV~~~~~~~~~~~~~~~d~E~~l~~~~fde~~~wy~~~~~---~~~~~~p~~v 602 (742)
T 2r7e_A 526 DPRCLTRYYSSFVNMERDLASGLIGPLLICYKESVDQRGNQIMSDKRNVILFSVFDENRSWYLTENI---QRFLPNPAGV 602 (742)
T ss_dssp SCSCCCCEEECCSSSSSTGGGSCCEECCCBCCCSCCCCCCSSCCSCCCEEEECBCCGGGSSCSHHHH---HHHSSSSSCS
T ss_pred CCCceEEEEecCcchhhhhhccceeeEEEcCccccccccCcCCCCceEEEEeeccccccccccccch---hhcccCchhc
Confidence 999999998753 8999999999875321 11 12458999999965 4432211 111100 000
Q ss_pred -------CCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCC-CeEEEEEcCceEEEEeecCCcccceEe
Q 008090 193 -------PNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALN-DELFFSIANHTLTVVEADAVYVKPFDT 264 (578)
Q Consensus 193 -------~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~-~~~~~~l~gh~~~via~DG~~v~P~~~ 264 (578)
......++|||+.+. + . .+.+++|++|||||+|+++. ..+.||||||+|+|+ +..+
T Consensus 603 ~~~~~~~~~~~~~~~ING~~~~----~---~-~l~v~~Ge~vr~rliN~g~~~~~h~~HlhGh~f~v~--------~~~~ 666 (742)
T 2r7e_A 603 QLEDPEFQASNIMHSINGYVFD----S---L-QLSVCLHEVAYWYILSIGAQTDFLSVFFSGYTFKHK--------MVYE 666 (742)
T ss_dssp CCCCHHHHGGGCCBCTTTTCSS----C---C-CCCCCSSCCCEEEEEECSSCCCCCCCEESSSCCCCB--------SSSB
T ss_pred ccccccccccCceeeecCcCCC----C---C-cEEEeCCCEEEEEEEeCCCCcceEEEEEcCcEEEEe--------ccce
Confidence 001135789999752 1 2 38999999999999998754 457899999999986 5789
Q ss_pred cEEEeCCCceEEEEEEcCCCCCCCceEEEEeecC
Q 008090 265 DKLLITPGQTANVLLRTKPYFPNATFFMQARPYF 298 (578)
Q Consensus 265 d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~ 298 (578)
|++.|.||||++|+|+++++ |.|++|||...
T Consensus 667 Dtv~l~Pg~~~~v~~~ad~p---G~w~~hcH~~~ 697 (742)
T 2r7e_A 667 DTLTLFPFSGETVFMSMENP---GLWILGCHNSD 697 (742)
T ss_dssp CSSCCCCCSSEECCEECCCC---CCSCCEECCCS
T ss_pred eEEEECCCcEEEEEEEcCCC---eEEEEEeCCch
Confidence 99999999999999999987 99999999643
No 39
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=99.96 E-value=3.9e-29 Score=251.58 Aligned_cols=235 Identities=16% Similarity=0.133 Sum_probs=163.2
Q ss_pred CceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceE
Q 008090 196 SDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTA 275 (578)
Q Consensus 196 ~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~ 275 (578)
...+++||+. ..|.|+++.|+++++++.|.... ..++|+||.. ..+.||.+. ++...|.||+++
T Consensus 54 ~~~~~~ng~~---------pgP~i~~~~Gd~v~v~~~N~~~~-~~~iH~HG~~--~~~~DG~p~----~~~~~i~PG~~~ 117 (288)
T 3gdc_A 54 FKGWSYNGRI---------PGPTLWAREGDALRIHFTNAGAH-PHTIHFHGVH--RATMDGTPG----IGAGSIAPGQSF 117 (288)
T ss_dssp EEEEEETTBS---------SCCEEEEETTCEEEEEEEECSSS-CBCCEESSCC--CGGGSCCTT----STTCSBCTTCEE
T ss_pred EEEEEECCcc---------CCCcEEEeCCCEEEEEEEeCCCC-cccEEecccc--ccccCCCCC----ccceeECCCCEE
Confidence 3689999985 34899999999999999999854 4569999976 457898753 244678999999
Q ss_pred EEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCccccccccccccccc
Q 008090 276 NVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDTSFAVNFTRKFRSLA 355 (578)
Q Consensus 276 dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~l~ 355 (578)
+..++++++ |.||+|||...... . ......+.|.+..... .+.
T Consensus 118 ~y~f~~~~~---Gt~~yH~H~~~~~~-~-~~~Gl~G~liV~~~~~--------------~~~------------------ 160 (288)
T 3gdc_A 118 TYEFDATPF---GTHLYHCHQSPLAP-H-IAKGLYGGFIVEPKEG--------------RPP------------------ 160 (288)
T ss_dssp EEEEECCSC---EEEEEECCCSSHHH-H-HHTTCEEEEEEECSSC--------------CCC------------------
T ss_pred EEEEEcCCC---ccEEEEecCcchHH-H-HhCcCeEEEEEeCCcc--------------CCC------------------
Confidence 999999776 99999999632100 0 0112334444433211 000
Q ss_pred CCCCCCCCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhhhcCCCCCcccCCCCCCCCC
Q 008090 356 SVKYPANVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYFFGQNNGVYTTDFPVKPPM 435 (578)
Q Consensus 356 ~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~ 435 (578)
.++++.+-+..... ++ ....-.|.+||+.|..
T Consensus 161 -----------~d~e~~l~~~d~~~----~~-----g~~~~~~~iNG~~~~~---------------------------- 192 (288)
T 3gdc_A 161 -----------ADDEMVMVMNGYNT----DG-----GDDNEFYSVNGLPFHF---------------------------- 192 (288)
T ss_dssp -----------CSEEEEEEEEEECC----SS-----TTCCSEEEETTSTTHH----------------------------
T ss_pred -----------CcceEEEEEeeEec----CC-----CCCcceEEECcccccc----------------------------
Confidence 02222222211000 00 0011235677754310
Q ss_pred CCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcc
Q 008090 436 PFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMER 515 (578)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~r 515 (578)
....+.++.|++|+|.+.|.+. ..+.|||||||+.|+|++.+.. +..+.++
T Consensus 193 ----------------~~~~l~v~~Ge~vr~~l~N~g~-~~~~H~fHlhG~~f~v~~~g~~------------~~~~~~~ 243 (288)
T 3gdc_A 193 ----------------MDFPVKVKQHELVRIHLINVLE-YDPINSFHIHGNFFHYYPTGTM------------LTPSEYT 243 (288)
T ss_dssp ----------------HHSCEEEETTCCEEEEEEECCC-SSSEEEEEETTCCEEEEETTCC------------SSCSEEE
T ss_pred ----------------cCcccccCCCCEEEEEEEeCCC-CCcceeEEEcCCEEEEEcCCCc------------cCCCcee
Confidence 0123577889999999999652 1246999999999999875321 2345799
Q ss_pred eeeeeCCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEec
Q 008090 516 NTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQN 560 (578)
Q Consensus 516 DTv~vpp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~ 560 (578)
||+.|+||++..|+|++++||.|+||||+++|++.|||+.|+|.+
T Consensus 244 Dtv~v~pg~~~~v~~~~~~pG~~~~hCH~~~H~~~GM~~~~~V~~ 288 (288)
T 3gdc_A 244 DTISQVQGQRGILELRFPYPGKFMFHAHKTEFAELGWMGFFEVSA 288 (288)
T ss_dssp SEEEEETTCEEEEEECCCSCEEEEEECSSHHHHTTTCEEEEEEEC
T ss_pred eEEEeCCCceEEEEEECCCCEEEEEEecChHHHhcCCCEEEEEeC
Confidence 999999999999999999999999999999999999999999963
No 40
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=99.95 E-value=3.1e-28 Score=250.48 Aligned_cols=218 Identities=16% Similarity=0.187 Sum_probs=153.8
Q ss_pred CeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCC---------
Q 008090 215 DTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYF--------- 285 (578)
Q Consensus 215 ~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~--------- 285 (578)
..|+|++++|+++|+||+|..... +++|+||..+. .+.||.++ +...|.|||+++..++++++.
T Consensus 75 pGP~I~v~~Gd~v~v~~~N~l~~~-~sih~HG~~~~-~~~DG~~~-----t~~~I~PG~~~~y~f~~~~pg~~~~g~~~~ 147 (343)
T 3cg8_A 75 PGPLIEVNEGDTLHIEFTNTMDVR-ASLHVHGLDYE-ISSDGTAM-----NKSDVEPGGTRTYTWRTHKPGRRDDGTWRP 147 (343)
T ss_dssp SCCCEEEETTCEEEEEEEECSSSC-BCCEESSSBCC-GGGSCCTT-----TTCSBCTTCEEEEEEECCCCEECTTSCEEC
T ss_pred cCCEEEEECCCEEEEEEEECCCCC-eeEEecCcccC-CcCCCccc-----ccccccCCCEEEEEEEeCCCCcccccccCC
Confidence 458999999999999999999654 45999998877 68999864 345689999999999987641
Q ss_pred -CCCceEEEEeecCCCC---CCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCcccccccccccccccCCCCCC
Q 008090 286 -PNATFFMQARPYFSGM---GTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDTSFAVNFTRKFRSLASVKYPA 361 (578)
Q Consensus 286 -~~g~y~l~~~~~~~~~---~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~l~~~~~p~ 361 (578)
..|.|++|+|...... .......+..|++ .... + .
T Consensus 148 ~~~Gt~~YH~h~~~~~~~~~~~~~Gl~G~~iV~--~~~~------------~-~-------------------------- 186 (343)
T 3cg8_A 148 GSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVR--RKGD------------V-L-------------------------- 186 (343)
T ss_dssp CSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEE--CTTC------------C-C--------------------------
T ss_pred CCceEEEEecCccccccchhhhhcCCeEEEEEe--cCCC------------C-C--------------------------
Confidence 1278999998522100 0001112222222 1100 0 0
Q ss_pred CCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhhhcCCCCCcccCCCCCCCCCCCCCCC
Q 008090 362 NVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYFFGQNNGVYTTDFPVKPPMPFNYTG 441 (578)
Q Consensus 362 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~ 441 (578)
.++.+.+.++. |.+||+.+
T Consensus 187 -----pd~e~~l~~~d--------------------~~iNG~~~------------------------------------ 205 (343)
T 3cg8_A 187 -----PDATHTIVFND--------------------MTINNRKP------------------------------------ 205 (343)
T ss_dssp -----CSEEEEEEEET--------------------TEETTCCT------------------------------------
T ss_pred -----CCceEEEEccc--------------------ceecccCC------------------------------------
Confidence 02333332211 45776532
Q ss_pred CCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeC
Q 008090 442 TPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVP 521 (578)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp 521 (578)
...+.+.++.|++|+|+|.|.+ .+.||||||||.|+|+.. |.+.. ....+.||||+.|+
T Consensus 206 ---------~~~~~l~v~~Ge~vri~l~N~g---~~~HpfHlHGh~f~v~~~--G~~~~-------p~~~~~~~Dtv~v~ 264 (343)
T 3cg8_A 206 ---------HTGPDFEATVGDRVEIVMITHG---EYYHTFHMHGHRWADNRT--GILTG-------PDDPSRVIDNKITG 264 (343)
T ss_dssp ---------TCCCCEEEETTCEEEEEEEEES---SCCEEEEETTCCEESSSS--SSCCS-------TTCCCCEESEEEEC
T ss_pred ---------CCCccEEeCCCCEEEEEEEcCC---ccccccEecCcEEEEecc--CcccC-------CCCcccceeeEEeC
Confidence 0134568899999999999975 389999999999999743 22211 12235789999999
Q ss_pred CCcEEEEEEEc---cCceeeEEeeechhhhhccceEEEEEecCC
Q 008090 522 AGGWVAIRFFA---DNPGVWFMHCHLDVHTSWGLRMAWIVQNGA 562 (578)
Q Consensus 522 p~g~v~irf~a---dnpG~wl~HCHil~H~d~GM~~~~~V~~~~ 562 (578)
|++++.|+|++ +|||.|+||||+++|++.|||++|.|.+.+
T Consensus 265 PG~~~~v~~~~~~~~~pG~w~~HCHi~~H~~~GM~g~~~V~~~~ 308 (343)
T 3cg8_A 265 PADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPD 308 (343)
T ss_dssp TTCEEEEEEETTTTTCSEEEEEEECSHHHHHTTCEEEEEEECTT
T ss_pred CCCEEEEEEEECCCCCCeeEEEeCCCHHHHhccCcEEEEEecCC
Confidence 99999999995 899999999999999999999999998653
No 41
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=99.95 E-value=2.5e-27 Score=241.38 Aligned_cols=248 Identities=17% Similarity=0.197 Sum_probs=163.2
Q ss_pred ceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEE-EeecCCcccceEecEEEeCCCceE
Q 008090 197 DAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTV-VEADAVYVKPFDTDKLLITPGQTA 275 (578)
Q Consensus 197 ~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~v-ia~DG~~v~P~~~d~v~l~pgeR~ 275 (578)
..+++||+. ..|+|+++.|+++++|+.|... ...++|+||....- .+.||.+. +....|.||+++
T Consensus 23 ~~~~~ng~~---------pGP~i~~~~Gd~v~v~~~N~l~-~~~siH~HG~~~~~~~~~DG~p~----~t~~~i~PG~~~ 88 (318)
T 3g5w_A 23 HTFAFNGQV---------PAPLIHVMEGDDVTVNVTNMTT-LPHTIHWHGMLQRGTWQSDGVPH----ATQHAIEPGDTF 88 (318)
T ss_dssp EEEEETTBS---------SCCEEEEETTCEEEEEEEECSS-SCBCCEEETCCCTTCGGGSCCBT----TTBCCBCTTCEE
T ss_pred EEEEECCcc---------CCceEEEeCCCEEEEEEEeCCC-CceeEEecCcCCCCCcccCCCcc----cccccCCCCCEE
Confidence 679999984 3589999999999999999985 45679999986543 46899743 234678999999
Q ss_pred EEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCccccccccccccccc
Q 008090 276 NVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDTSFAVNFTRKFRSLA 355 (578)
Q Consensus 276 dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~l~ 355 (578)
+..++++++ |+||+|||...... .......+.|.+..... ... +.
T Consensus 89 ~y~f~~~~~---Gt~wYH~H~~~~~~--~~~~Gl~G~lIV~~~~~--------~~~----~~------------------ 133 (318)
T 3g5w_A 89 TYKFKAEPA---GTMWYHCHVNVNEH--VTMRGMWGPLIVEPKNP--------LPI----EK------------------ 133 (318)
T ss_dssp EEEEECCSC---EEEEEECCSSHHHH--HHHSCCEEEEEEECSSC--------CHH----HH------------------
T ss_pred EEEEEcCCC---EEEEEEccCChhhh--hccCCCEEEEEEcCCCc--------ccc----cc------------------
Confidence 999999876 99999999521100 00012233333333111 000 00
Q ss_pred CCCCCCCCCcccceEEEEEecCCCCCCCCCC-cccCCCCCeeEeeecceeeecCcchhhhhhhcCCCCCcccCCCCCCCC
Q 008090 356 SVKYPANVPQIVDRKFFFTVGLGSNPCPKNT-TCQGPNGTKFSASVNNVSFVLPSTAILQSYFFGQNNGVYTTDFPVKPP 434 (578)
Q Consensus 356 ~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p 434 (578)
..++.+.+.+.-......... ....+....-.|.+||+.|.
T Consensus 134 ----------~~d~e~~l~l~dw~~~~~~~~~~~~~~~~~~d~~~ING~~~~---------------------------- 175 (318)
T 3g5w_A 134 ----------TVTKDYILMLSDWVSSWANKPGEGGIPGDVFDYYTINAKSFP---------------------------- 175 (318)
T ss_dssp ----------TCCEEEEEEEEEECGGGTTCTTCCCCTTCCCCEEEETTBCBT----------------------------
T ss_pred ----------cccceeEEEEEeeccccccccccCCCCCCcCcEEEEcCcCCC----------------------------
Confidence 001111111100000000000 00000001113566665330
Q ss_pred CCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCc
Q 008090 435 MPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPME 514 (578)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~ 514 (578)
.+..+.++.|++++|+|.|.+ ...||||||||.|+|++..... +..|.+
T Consensus 176 -----------------~~~~l~v~~G~~vrlrliN~~---~~~h~~hlhGh~f~vi~~dG~~-----------~~~p~~ 224 (318)
T 3g5w_A 176 -----------------ETQPIRVKKGDVIRLRLIGAG---DHVHAIHTHGHISQIAFKDGFP-----------LDKPIK 224 (318)
T ss_dssp -----------------SSCCEEECTTCEEEEEEEECS---SSCEEEEETTSCEEEEEETTEE-----------EEEEEE
T ss_pred -----------------CCccEEeCCCCEEEEEEEeCC---CceEEEEECCcEEEEEecCCcc-----------cCCCcc
Confidence 123467899999999999975 3689999999999999974321 235678
Q ss_pred ceeeeeCCCcEEEEEEEccCceeeEEeeechhhhh------ccceEEEEEecCC
Q 008090 515 RNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHTS------WGLRMAWIVQNGA 562 (578)
Q Consensus 515 rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H~d------~GM~~~~~V~~~~ 562 (578)
|||+.|+||+++.|+|+++|||.|+||||+++|++ .|||.+++|....
T Consensus 225 ~dtv~l~pger~~v~~~a~~pG~w~~hCH~~~H~~~g~~~~~Gm~~~i~~~g~~ 278 (318)
T 3g5w_A 225 GDTVLIGPGERYDVILNMDNPGLWMIHDHVDTHTTNGDKPDGGIMTTIEYEEVG 278 (318)
T ss_dssp ESEEEECTTCEEEEEEECCSCSEEEEEESSGGGSCBTTBSSCBSEEEEEETTTC
T ss_pred ccEEEECCCCEEEEEEECCCCeeEEEEeccHHHhhccCcCCCCCEEEEEECCCC
Confidence 99999999999999999999999999999999998 6899999997643
No 42
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=99.95 E-value=5.6e-27 Score=234.35 Aligned_cols=220 Identities=16% Similarity=0.186 Sum_probs=155.7
Q ss_pred CeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCC----------
Q 008090 215 DTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPY---------- 284 (578)
Q Consensus 215 ~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~---------- 284 (578)
..|+|+++.|+++++++.|.. ....++|+||..+.. +.||.+ +..-.|.||+++...++++++
T Consensus 34 pGP~i~~~~Gd~v~v~~~N~~-~~~~siH~HG~~~~~-~~DG~~-----~t~~~i~pG~~~~Y~f~~~~~~~~~~g~~~~ 106 (276)
T 3kw8_A 34 PGPLIEVNEGDTLHIEFTNTM-DVRASLHVHGLDYEI-SSDGTA-----MNKSDVEPGGTRTYTWRTHKPGRRDDGTWRP 106 (276)
T ss_dssp SCCCEEEETTCEEEEEEEECS-SSCBCCEESSSBCCG-GGSCCT-----TTTCSBCTTCEEEEEEECCCCEECTTSCEEC
T ss_pred cCCeEEEECCCEEEEEEEECC-CCCccEeecCcccCC-ccCCCc-----CCcCCCCCCCEEEEEEEcCCccccccCccCC
Confidence 458999999999999999997 455679999987654 689875 334568999999999999762
Q ss_pred CCCCceEEEEeecCCCCCCC-CCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCcccccccccccccccCCCCCCCC
Q 008090 285 FPNATFFMQARPYFSGMGTI-DNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDTSFAVNFTRKFRSLASVKYPANV 363 (578)
Q Consensus 285 ~~~g~y~l~~~~~~~~~~~~-~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~l~~~~~p~~~ 363 (578)
..-|.|++|||......... ......+.|....... +
T Consensus 107 ~~~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~~~------------~------------------------------ 144 (276)
T 3kw8_A 107 GSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGD------------V------------------------------ 144 (276)
T ss_dssp CSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTC------------C------------------------------
T ss_pred CCCEEEEEecCccccccchhhhhCccEEEEEEecCCC------------c------------------------------
Confidence 01279999999532100000 0012233333332110 0
Q ss_pred CcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhhhcCCCCCcccCCCCCCCCCCCCCCCCC
Q 008090 364 PQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYFFGQNNGVYTTDFPVKPPMPFNYTGTP 443 (578)
Q Consensus 364 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~ 443 (578)
..++.+.+.++. |.+||+.+.
T Consensus 145 --~~drE~~l~l~~--------------------~~iNG~~~~------------------------------------- 165 (276)
T 3kw8_A 145 --LPDATHTIVFND--------------------MTINNRKPH------------------------------------- 165 (276)
T ss_dssp --CCSEEEEEEEET--------------------TEETTCCTT-------------------------------------
T ss_pred --ccccceEEEecc--------------------cccceeccc-------------------------------------
Confidence 003444443211 467775331
Q ss_pred CCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCC
Q 008090 444 PNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAG 523 (578)
Q Consensus 444 ~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~ 523 (578)
..+.+.++.|++|+|+|.|.+ .+.|||||||+.|+|++.| .++. ....+.+|||+.|+|+
T Consensus 166 --------~~p~i~v~~G~~vri~l~N~~---~~~Hp~HlHG~~f~v~~~G--~~~~-------p~~~~~~~Dtv~v~pg 225 (276)
T 3kw8_A 166 --------TGPDFEATVGDRVEIVMITHG---EYYHTFHMHGHRWADNRTG--ILTG-------PDDPSRVIDNKITGPA 225 (276)
T ss_dssp --------CCCCEEEETTCEEEEEEEEES---SCCEEEEETTCCEESSSSS--SCCS-------TTCCCCEESEEEECTT
T ss_pred --------CCCCEEEecCCEEEEEEecCC---CcceeEEEccceeEEeccC--ccCC-------CcccccCCccEEeCCC
Confidence 134568899999999999975 3799999999999997533 2221 1123468999999999
Q ss_pred cEEEEEEEcc---CceeeEEeeechhhhhccceEEEEEecCC
Q 008090 524 GWVAIRFFAD---NPGVWFMHCHLDVHTSWGLRMAWIVQNGA 562 (578)
Q Consensus 524 g~v~irf~ad---npG~wl~HCHil~H~d~GM~~~~~V~~~~ 562 (578)
++..++|+++ |||.|+||||+++|++.|||+.|+|.+++
T Consensus 226 ~~~~~~~~~~~~~npG~w~~HCH~~~H~~~GM~g~~~V~~~~ 267 (276)
T 3kw8_A 226 DSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPD 267 (276)
T ss_dssp CEEEEEEETTTTTCSEEEEEEECSHHHHHTTCEEEEEEECTT
T ss_pred ceEEEEEEeccCCCCCeEEEECCCchHhhCCCeEEEEEeCCC
Confidence 9999999997 89999999999999999999999999763
No 43
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=99.94 E-value=1.3e-26 Score=233.95 Aligned_cols=220 Identities=19% Similarity=0.248 Sum_probs=150.5
Q ss_pred CeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCC----------
Q 008090 215 DTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPY---------- 284 (578)
Q Consensus 215 ~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~---------- 284 (578)
+.|+|+++.|++++++|.|... ...++|.||..+. -+.||.++. .-.|.|||+++..+++..+
T Consensus 56 PGP~i~~~~GD~v~v~~~N~l~-~~~siH~HG~~~~-~~~DG~~~~-----~~~i~PG~t~~Y~~~~~~~~~~~~~~~~~ 128 (299)
T 3t9w_A 56 PGPVLEMWEGDTLEIDLVNTTD-RVLSLHPHGVDYD-VNSDGTLMN-----GSAVMPGQTRRYTWRSHVGYRRADGSWAE 128 (299)
T ss_dssp SCCCEEEETTCEEEEEEEECSS-SCBCCEESSSBCC-GGGSCCTTT-----TCCBCTTCEEEEEEBCCCCEECTTSCEEC
T ss_pred cCceEEEECCeEEEEEEEECCC-CCccEEeCCcccC-CccCCCccc-----cCccCCCCeEEEEEEeecccccCCCcCCC
Confidence 4589999999999999999985 4567999998765 367887542 1247899999999987632
Q ss_pred CCCCceEEEEeecCCCCCCCC-CcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCcccccccccccccccCCCCCCCC
Q 008090 285 FPNATFFMQARPYFSGMGTID-NSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDTSFAVNFTRKFRSLASVKYPANV 363 (578)
Q Consensus 285 ~~~g~y~l~~~~~~~~~~~~~-~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~l~~~~~p~~~ 363 (578)
..-|.||+|||.........+ .....+.|....... +
T Consensus 129 ~~~gt~~YH~H~~~~~~~~~~~~~GL~G~liV~~~~~------------~------------------------------ 166 (299)
T 3t9w_A 129 GTAGYWHYHDHAMGTEHGTEGVLKGLYGALVVRRQGD------------L------------------------------ 166 (299)
T ss_dssp CCCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTC------------C------------------------------
T ss_pred CCceeEEEecCCcccccchhhhcccccceEEEecccc------------c------------------------------
Confidence 112999999985322110000 012233333322100 0
Q ss_pred CcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhhhcCCCCCcccCCCCCCCCCCCCCCCCC
Q 008090 364 PQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYFFGQNNGVYTTDFPVKPPMPFNYTGTP 443 (578)
Q Consensus 364 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~ 443 (578)
..++.+.+.++. |.+|++.+
T Consensus 167 --~~d~e~~l~~~~--------------------~~~Ng~~~-------------------------------------- 186 (299)
T 3t9w_A 167 --LPKRQFTVVFND--------------------MMINNRAH-------------------------------------- 186 (299)
T ss_dssp --CCSEEEEEEEET--------------------TEETTCCT--------------------------------------
T ss_pred --Cccccceeeeee--------------------eeecCccc--------------------------------------
Confidence 014444443321 34555322
Q ss_pred CCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCC
Q 008090 444 PNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAG 523 (578)
Q Consensus 444 ~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~ 523 (578)
...+.+.++.|++|+|+|.|.+ .+.||||||||.|+|+..+... .....+.++||+.|.|+
T Consensus 187 -------~~~p~l~v~~Ge~Vr~~liN~~---~~~HpfHlHGh~F~v~~~g~~~---------~~~~~~~~~Dtv~v~PG 247 (299)
T 3t9w_A 187 -------HDAPTFEANLGERVEWIAIGHG---SNFHTFHLHGHRWLDNRTGMRT---------SEYDPSPLIDIKDLNPG 247 (299)
T ss_dssp -------TCCCEEEEETTCEEEEEEEEES---SCCCEEEETTCCEESSSSSSCC---------STTCCCCEESEEECCTT
T ss_pred -------cccccceecCCCEEEEEEEecc---ccceeeeEecceEEEEeccccc---------CCcCCCCceeeEEeCCc
Confidence 0134567889999999999965 4789999999999998765322 22344568999999999
Q ss_pred cEEE---EEEEccCceeeEEeeechhhhhccceEEEEEecCC
Q 008090 524 GWVA---IRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQNGA 562 (578)
Q Consensus 524 g~v~---irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~ 562 (578)
+... ++|+++|||.|+||||+++|++.|||++|.|.+.+
T Consensus 248 e~~~~~via~~~dnPG~w~~HCHi~~H~~~GM~~~f~V~~~~ 289 (299)
T 3t9w_A 248 VSFGFQVIAGEGVGPGMWMYHCHVQNHSDMGMAGMFLVRNAD 289 (299)
T ss_dssp CEEEEEEETTTTTCSEEEEEEECSHHHHHTTCEEEEEEECTT
T ss_pred eeEEEEEEEeeCCCCeeEEEEcCCHHHHhcCCeEEEEEECCC
Confidence 6554 55567899999999999999999999999998753
No 44
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=99.94 E-value=1e-26 Score=239.39 Aligned_cols=245 Identities=17% Similarity=0.148 Sum_probs=158.7
Q ss_pred CceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEe---ecCCcccceEecEEEeCCC
Q 008090 196 SDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVE---ADAVYVKPFDTDKLLITPG 272 (578)
Q Consensus 196 ~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via---~DG~~v~P~~~d~v~l~pg 272 (578)
...+++||+. ..|+|++++|+++|+||+|.+.. ..++|.||.. +.. .||.+. ++...|.||
T Consensus 23 ~~~~~~NG~~---------pGP~I~v~~Gd~v~v~v~N~l~~-~~siH~HG~~--~~~~~~~DGvp~----vtq~~I~PG 86 (339)
T 2zwn_A 23 YKVFGFNGQV---------PGPLIHVQEGDDVIVNVTNNTSL-PHTIHWHGVH--QKGTWRSDGVPG----VTQQPIEAG 86 (339)
T ss_dssp EEEEEETTBS---------SCCEEEEETTCEEEEEEEEESSS-CBCCEEETCC--CTTCGGGSCCBT----TTBCCBCTT
T ss_pred EEEEEECCcc---------CCCeEEEECCCEEEEEEEECCCC-CccEEeCCCC--cCCCcccCCCCc----cccCccCCC
Confidence 3679999984 34899999999999999999854 4456666644 445 499752 344679999
Q ss_pred ceEEEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCcccccccccccc
Q 008090 273 QTANVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDTSFAVNFTRKFR 352 (578)
Q Consensus 273 eR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~ 352 (578)
||+++.|+++++ |+||+|||..... ........+.+....... ..+ +.
T Consensus 87 ~~~~y~f~~~~~---Gt~wyH~H~~~~~--q~~~~Gl~G~liV~p~~~--------~~~----~~--------------- 134 (339)
T 2zwn_A 87 DSYTYKFKADRI---GTLWYHCHVNVNE--HVGVRGMWGPLIVDPKQP--------LPI----EK--------------- 134 (339)
T ss_dssp CEEEEEEECCSC---EEEEEECCSSHHH--HTTTSCCEEEEEEECSSC--------CTT----GG---------------
T ss_pred CeEEEEEECCCC---EEEEEEecCCchh--hhhcCCceEeEEecCCCc--------ccc----cc---------------
Confidence 999999999876 9999999953200 001012223233332110 000 00
Q ss_pred cccCCCCCCCCCcccceEEEEEec---CCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhhhcCCCCCcccCCC
Q 008090 353 SLASVKYPANVPQIVDRKFFFTVG---LGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYFFGQNNGVYTTDF 429 (578)
Q Consensus 353 ~l~~~~~p~~~p~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~~~ 429 (578)
..++.+.+.+. ......+ ... .......-.|.+||+.+
T Consensus 135 -------------~~d~e~~l~l~d~~~~~~~~~-~~~-g~~~~~~~~~~ING~~~------------------------ 175 (339)
T 2zwn_A 135 -------------RVTKDVIMMMSTWESAVADKY-GEG-GTPMNVADYFSVNAKSF------------------------ 175 (339)
T ss_dssp -------------GCSEEEEEEEEEECGGGTTCT-TCC-CSTTSCCCEEEETTBCT------------------------
T ss_pred -------------cCCceEEEEeeheeccccccc-CCC-CCCccccceEEEccccC------------------------
Confidence 00111111110 0000000 000 00000011244555322
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCC
Q 008090 430 PVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNL 509 (578)
Q Consensus 430 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~ 509 (578)
....++.++.|++++|+|.|.+ ...||||||||.|+|++..... .
T Consensus 176 ---------------------~~~~~~~v~~G~~vrlrliN~~---~~~h~~hlhGh~f~vi~~DG~~-----------~ 220 (339)
T 2zwn_A 176 ---------------------PLTQPLRVKKGDVVKIRFFGAG---GGIHAMHSHGHDMLVTHKDGLP-----------L 220 (339)
T ss_dssp ---------------------TSSCCEEECTTCEEEEEEEECS---SSCEEEEETTCCEEEEEETTEE-----------E
T ss_pred ---------------------CCcccEEECCCCEEEEEEEeCC---CceEEEEECCcEEEEEEeCCee-----------c
Confidence 1123467889999999999975 3699999999999999984321 2
Q ss_pred CCCCcceeeeeCCCcEEEEEEEccCceeeEEeeechhh------hhccceEEEEEecCC
Q 008090 510 VDPMERNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVH------TSWGLRMAWIVQNGA 562 (578)
Q Consensus 510 ~~p~~rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H------~d~GM~~~~~V~~~~ 562 (578)
.+|.++||+.|+||+++.|+|++|+||.|++|||+++| ++.||+++++|....
T Consensus 221 ~~p~~~dtv~l~pg~r~~v~~~~~~pG~w~~hch~~~H~~~~~~~~~gm~a~l~~~g~~ 279 (339)
T 2zwn_A 221 DSPYYADTVLVSPGERYDVIIEADNPGRFIFHDHVDTHVTAGGKHPGGPITVIEYDGVP 279 (339)
T ss_dssp EEEEEESEEEECTTCEEEEEEECCSCSEEEEEECCGGGSCBTTBSSCSSEEEEEETTSC
T ss_pred CCCcEEEEEEECCCCEEEEEEEeCCCeeEEEEEechhhcccccccCCCcEEEEEECCCC
Confidence 23678999999999999999999999999999999999 889999999987543
No 45
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=99.94 E-value=7.7e-26 Score=230.09 Aligned_cols=221 Identities=15% Similarity=0.176 Sum_probs=151.6
Q ss_pred CeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCC----------
Q 008090 215 DTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPY---------- 284 (578)
Q Consensus 215 ~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~---------- 284 (578)
+.|+|+++.|++++++|.|... ...++|+||..+.. +.||... ..-.|.||++++..+++..+
T Consensus 40 PGP~i~~~~Gd~v~v~~~N~l~-~~~siH~HG~~~~~-~~dG~~~-----~~~~i~PG~~~~Y~~~~~~P~~~~~~~~~~ 112 (313)
T 3tas_A 40 PGPLIELNEGDTLHIEFENTMD-VPVSLHVHGLDYEI-SSDGTKQ-----SRSDVEPGGTRTYTWRTHVPGRRADGTWRA 112 (313)
T ss_dssp SCCCEEEETTCEEEEEEEECSS-SCBCCEESSSBCCG-GGSCSTT-----TTCCBCTTCEEEEEEBCCCCEECTTSCEEC
T ss_pred cCCeEEEECCCEEEEEEEECCC-CCccEeecCCcCCc-cCCCCcc-----ccCCcCCCCEEEEEEEeccCCccccccccC
Confidence 4589999999999999999985 45579999976643 5788754 12247899999999887532
Q ss_pred CCCCceEEEEeecCCCCCCCC-CcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCcccccccccccccccCCCCCCCC
Q 008090 285 FPNATFFMQARPYFSGMGTID-NSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDTSFAVNFTRKFRSLASVKYPANV 363 (578)
Q Consensus 285 ~~~g~y~l~~~~~~~~~~~~~-~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~l~~~~~p~~~ 363 (578)
..-|.||+|||.........+ .....+.|....... .
T Consensus 113 ~~~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~~~----------~-------------------------------- 150 (313)
T 3tas_A 113 GSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGD----------V-------------------------------- 150 (313)
T ss_dssp CSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTC----------B--------------------------------
T ss_pred CCceEEEEeecCcccccchhhhhccccCceEeecccc----------c--------------------------------
Confidence 112889999995321100000 012233333332100 0
Q ss_pred CcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhhhcCCCCCcccCCCCCCCCCCCCCCCCC
Q 008090 364 PQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYFFGQNNGVYTTDFPVKPPMPFNYTGTP 443 (578)
Q Consensus 364 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~ 443 (578)
..|+.+.+.++. |++|+..+
T Consensus 151 --~~d~e~~l~~~d--------------------~t~Ng~~~-------------------------------------- 170 (313)
T 3tas_A 151 --LPDRTHTIVFND--------------------MTINNRPA-------------------------------------- 170 (313)
T ss_dssp --CCSEEEEEEEET--------------------TEETTCCT--------------------------------------
T ss_pred --cccccceeeccc--------------------hhcccCCc--------------------------------------
Confidence 013444443221 44554311
Q ss_pred CCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCC
Q 008090 444 PNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAG 523 (578)
Q Consensus 444 ~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~ 523 (578)
...+.+.++.|++|+|+|.|.+ .+.||||||||.|+|+..+.. ......+.++||+.|.|+
T Consensus 171 -------~~~~~l~v~~Ge~vr~~liN~g---~~~hpfHlHGh~F~v~~~~~~---------~~~~~~~~~~Dtv~l~Pg 231 (313)
T 3tas_A 171 -------HTGPDFEATVGDRVEFVMITHG---EYYHTFHLHGHRWADNRTGML---------TGPDDPSQVIDNKICGPA 231 (313)
T ss_dssp -------TCCCCEEEETTCEEEEEEEEES---SCCEEEEETTCCEESSTTSSC---------CSTTCCCCEESEEEECTT
T ss_pred -------ccccccccccCCEEEEEEeccc---ccceeeeecCCeeEEEEECCc---------cCCCCCCeeeeEEEeCCC
Confidence 0123467888999999999965 479999999999999876422 122345788999999999
Q ss_pred cEEEEEEE---ccCceeeEEeeechhhhhccceEEEEEecCCC
Q 008090 524 GWVAIRFF---ADNPGVWFMHCHLDVHTSWGLRMAWIVQNGAQ 563 (578)
Q Consensus 524 g~v~irf~---adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~ 563 (578)
+...+++. ++|||.|+||||+++|++.|||+.|.|++++.
T Consensus 232 er~~v~v~a~~~~nPG~w~~HCHi~~H~~~GM~~~f~V~~~d~ 274 (313)
T 3tas_A 232 DSFGFQVIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDG 274 (313)
T ss_dssp CEEEEEEETTTTTCSEEEEEEECSHHHHHTTCEEEEEEECTTC
T ss_pred cceEEEEEeccCCCCEeEEEEeCChHHHHCCCeEEEEEECCCC
Confidence 88877775 46999999999999999999999999998754
No 46
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=99.87 E-value=1.5e-23 Score=212.70 Aligned_cols=239 Identities=14% Similarity=0.099 Sum_probs=133.9
Q ss_pred EEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcc-c---ceEecEEEeCCCce
Q 008090 199 YTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYV-K---PFDTDKLLITPGQT 274 (578)
Q Consensus 199 ~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v-~---P~~~d~v~l~pgeR 274 (578)
.++||.++ |+|++++|+++++||+|.. ....++|.||..+.. +.||.+. . +..++...|.||||
T Consensus 52 ~~~n~~pG----------P~I~v~~Gd~v~v~~~N~l-~~~~siH~HGl~~~~-~~dG~~~~dg~~~~~~~~~~I~PG~~ 119 (306)
T 1sdd_A 52 SRTSGLLG----------PTLYAEVGDIMKVHFKNKA-HKPLSIHAQGIKYSK-FSEGASYSDHTLPMEKMDDAVAPGQE 119 (306)
T ss_dssp CSSCCSCC----------CCEEEETTCEEEEEEEECS-SSCBCCEEESSCCCT-TTSCCCSCCCCCHHHHTTTCBCTTCE
T ss_pred cccCCccC----------CEEEEeCCCEEEEEEEECC-CCcccEeecceeccc-ccCCCccCCCCcccccCCCccCCCCe
Confidence 34777654 7899999999999999987 466679999988533 6888764 1 22333578999999
Q ss_pred EEEEEEcCCCC-------CCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCccccccc
Q 008090 275 ANVLLRTKPYF-------PNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDTSFAVNF 347 (578)
Q Consensus 275 ~dv~v~~~~~~-------~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 347 (578)
++..+++++.. .-|+||+|+|...... ......+ ++|....... .. . +..... +....
T Consensus 120 ~~Y~f~~~~~~gp~~~d~~~GT~wYHsH~~~~~q-~~~GL~G-~liV~~~~~~----~~--~---~~~~~~-d~e~~--- 184 (306)
T 1sdd_A 120 YTYEWIISEHSGPTHDDPPCLTHIYYSYVNLVED-FNSGLIG-PLLICKKGTL----TE--D---GTQKMF-EKQHV--- 184 (306)
T ss_dssp EEEEEECCGGGSCCSSSCSEEEEEEECCSSSHHH-HHTTCCE-EEEEECTTCB----CT--T---SSBSSS-CCCCC---
T ss_pred EEEEEEeCCccCCCCCCCCceEEEEeccCCchhh-hccCceE-EEEEccCCCC----Cc--c---CCcCcc-cceEE---
Confidence 99999997642 1169999999421000 0111222 3443322110 00 0 000000 00000
Q ss_pred ccccccccCCCCCCCCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhhhcCCCCCcccC
Q 008090 348 TRKFRSLASVKYPANVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYFFGQNNGVYTT 427 (578)
Q Consensus 348 ~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~ 427 (578)
+.-. + ++...... ......+.+||+.+.
T Consensus 185 ------l~~~----------d----~d~~~~~~-----------~~~~~~~~ING~~~~--------------------- 212 (306)
T 1sdd_A 185 ------LMFA----------V----FDESKSWN-----------QTSSLMYTVNGYVNG--------------------- 212 (306)
T ss_dssp ------CBCC----------E----EETTSSSS-----------CCCCEEECSSSCCSS---------------------
T ss_pred ------EEEE----------e----cccccccc-----------cCCCcceeeCCEecC---------------------
Confidence 0000 0 00000000 000112445554220
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCC
Q 008090 428 DFPVKPPMPFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNF 507 (578)
Q Consensus 428 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~ 507 (578)
..+.+.++.|++++|.|.|.+. ....||||+|||.|++ .|
T Consensus 213 ------------------------~~p~l~v~~G~~vrlrliN~g~-~~~~h~~hlhG~~~~~----dG----------- 252 (306)
T 1sdd_A 213 ------------------------TMPDITVCAHDHISWHLIGMSS-GPELFSIHFNGQVLEQ----NH----------- 252 (306)
T ss_dssp ------------------------CCCCCCCCCC------BBCCCS-SSCEECCBCSSTTCEE----TT-----------
T ss_pred ------------------------CCcceEEcCCCEEEEEEEeCCC-CCccEEEEECCcEeee----CC-----------
Confidence 0123456789999999999753 2257999999999986 11
Q ss_pred CCCCCCcceeeeeCCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEecC
Q 008090 508 NLVDPMERNTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQNG 561 (578)
Q Consensus 508 ~~~~p~~rDTv~vpp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~ 561 (578)
.++||+.|.||+.+.|+|++++||.|+||||+++|++.||++.|.|.+.
T Consensus 253 -----~~~dtv~l~pger~~v~~~~~~pG~~~~hch~~~H~~~GM~~~~~V~~~ 301 (306)
T 1sdd_A 253 -----HKISAITLVSATSTTANMTVSPEGRWTIASLIPRHFQAGMQAYIDIKNC 301 (306)
T ss_dssp -----EECSCCCEETTCCBC--------CCCCCBCCSTTTGGGTCBCCC-----
T ss_pred -----EEcceEEECCCcEEEEEEEcCCCeEEEEEeCChHHHhcCCeEEEEEecC
Confidence 3599999999999999999999999999999999999999999999754
No 47
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=99.86 E-value=3.6e-21 Score=196.93 Aligned_cols=250 Identities=15% Similarity=0.143 Sum_probs=157.8
Q ss_pred ceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCC-CeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceE
Q 008090 197 DAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALN-DELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTA 275 (578)
Q Consensus 197 ~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~-~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~ 275 (578)
..+++||+. ..|+|++++|+++++|++|.... ..+++|+||.. +.||... ...|.|||++
T Consensus 59 ~~~~~ng~~---------pgP~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~----~~dG~~~------~~~i~PG~~~ 119 (327)
T 1kbv_A 59 RYWTFDGDV---------PGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAAT----GQGGGAA------ATFTAPGRTS 119 (327)
T ss_dssp EEEEETTBS---------SCCBEEEETTCEEEEEEEECTTCSSCBCCEETTCC----SGGGGTT------TTCBCTTEEE
T ss_pred EEEEECCcc---------CCCeEEEeCCCEEEEEEEECCCCCCceeeEeCccc----cCCCCCc------ceeecCCCEE
Confidence 679999984 34889999999999999999853 46678999863 5788642 1248999999
Q ss_pred EEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCccccccccccccccc
Q 008090 276 NVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDTSFAVNFTRKFRSLA 355 (578)
Q Consensus 276 dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~l~ 355 (578)
++.++++++ |+||+|||...... ... ....+.+.+..... +|..+. .....+.+.+
T Consensus 120 ~y~f~~~~~---Gt~wyH~h~~~~~~-~~~-~Gl~G~~iV~~~~~--------------~p~~d~-e~~l~~~d~~---- 175 (327)
T 1kbv_A 120 TFSFKALQP---GLYIYHCAVAPVGM-HIA-NGMYGLILVEPKEG--------------LPKVDK-EFYIVQGDFY---- 175 (327)
T ss_dssp EEEEECCSC---EEEEEECCCSSHHH-HHH-TTCEEEEEEECTTC--------------CCCCSE-EEEEEEEEEC----
T ss_pred EEEEECCCC---eEEEEEeCCCChhh-hhh-cceEEEEEEecCCC--------------CCCCce-EEEEEeeeee----
Confidence 999999886 99999998532100 000 11223333333110 111111 0000000000
Q ss_pred CCCCCCCCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhhhcCCCCCcccCCCCCCCCC
Q 008090 356 SVKYPANVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYFFGQNNGVYTTDFPVKPPM 435 (578)
Q Consensus 356 ~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~ 435 (578)
... .. ...... ..+... +....+ -.+.+||+.+.
T Consensus 176 ~~~---~~--~~~g~~--~~~~~~--------~~~~~~--~~~~iNG~~~~----------------------------- 209 (327)
T 1kbv_A 176 TKG---KK--GAQGLQ--PFDMDK--------AVAEQP--EYVVFNGHVGA----------------------------- 209 (327)
T ss_dssp BSS---CT--TCCEEE--CBCHHH--------HHHTCC--SEEEETTSTTT-----------------------------
T ss_pred ccC---cc--cccccc--ccChhH--------hccCCC--ceEEEcCcccC-----------------------------
Confidence 000 00 000000 000000 000000 01233432110
Q ss_pred CCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcc
Q 008090 436 PFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMER 515 (578)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~r 515 (578)
.+ ....+.++.|++++|.|.|.+. ...|+||+|||.|+||+...+. ..|.++
T Consensus 210 -------------~~-~~~~l~v~~G~~vRlRliN~~~--~~~~~~~l~Gh~f~vi~~DG~~------------~~p~~~ 261 (327)
T 1kbv_A 210 -------------LT-GDNALKAKAGETVRMYVGNGGP--NLVSSFHVIGEIFDKVYVEGGK------------LINENV 261 (327)
T ss_dssp -------------TS-GGGCEEEETTEEEEEEEEEEES--SCCEEEEEETCCBSEEEGGGSS------------CEECSB
T ss_pred -------------CC-CceeEEeCCCCEEEEEEECCCC--CCceeEEEeCCEEEEEEcCCCc------------CCCCce
Confidence 00 1245788999999999999652 4689999999999999975431 236789
Q ss_pred eeeeeCCCcEEEEEEEccCceeeEEeeechhhh-hccceEEEEEecCCC
Q 008090 516 NTIGVPAGGWVAIRFFADNPGVWFMHCHLDVHT-SWGLRMAWIVQNGAQ 563 (578)
Q Consensus 516 DTv~vpp~g~v~irf~adnpG~wl~HCHil~H~-d~GM~~~~~V~~~~~ 563 (578)
||+.|.||+...|.|++++||.|.+|||+++|. ..||+++++|.....
T Consensus 262 d~l~l~pGer~dv~v~~~~pG~y~l~~h~~~~~~~~g~~a~l~~~g~~~ 310 (327)
T 1kbv_A 262 QSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAEN 310 (327)
T ss_dssp SEEEECTTEEEEEEEEECSCEEEEEEESSTHHHHHSSCEEEEEEESCCC
T ss_pred eEEEECCCCEEEEEEEeCCCeEEEEEeccccccccCCcEEEEEECCCCC
Confidence 999999999999999999999999999999995 899999999986654
No 48
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=99.86 E-value=1.3e-20 Score=194.18 Aligned_cols=95 Identities=18% Similarity=0.226 Sum_probs=78.9
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCC--cceeeeeCCCcEEEEEEE
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPM--ERNTIGVPAGGWVAIRFF 531 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~--~rDTv~vpp~g~v~irf~ 531 (578)
..+.++.|++++|++.|.+ ...|++|+|||.|+|+.. |.+ ..++ ++||+.|.+|+.+.|.|+
T Consensus 231 ~~l~v~~G~r~Rl~n~~~~---~~~~~~~i~gh~~~Vi~d--G~~-----------~~~p~~~~dtv~l~pGer~~v~v~ 294 (340)
T 2bw4_A 231 HALTAAVGERVLVVHSQAN---RDTRPHLIGGHGDYVWAT--GKF-----------RNPPDLDQETWLIPGGTAGAAFYT 294 (340)
T ss_dssp GCEEEETTCEEEEEEEESS---SCBCEEEETCCEEEEETT--CCT-----------TSCCEEEESCCCBCTTEEEEEEEE
T ss_pred CceEcCCCCEEEEEECCCC---CccceEEecCcceEEeCC--Ccc-----------cCCccccceEEEeCCCceEEEEEE
Confidence 5678899999998887744 478899999999999852 221 1222 479999999999999999
Q ss_pred ccCceeeEEeeech-hhhhccceEEEEEecCCCC
Q 008090 532 ADNPGVWFMHCHLD-VHTSWGLRMAWIVQNGAQP 564 (578)
Q Consensus 532 adnpG~wl~HCHil-~H~d~GM~~~~~V~~~~~~ 564 (578)
+++||.|+||||++ +|++.|||+.|+|....++
T Consensus 295 ~~~pG~y~~~~h~~~~h~~~Gm~~~~~V~~~~~~ 328 (340)
T 2bw4_A 295 FRQPGVYAYVNHNLIEAFELGAAGHFKVTGEWND 328 (340)
T ss_dssp CCSCEEEEEEESSHHHHHTTSCEEEEEEESCCCT
T ss_pred CCCCeeeEEEcCchHHHHhCCCEEEEEECCCCch
Confidence 99999999999999 5999999999999876553
No 49
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=99.86 E-value=2.1e-21 Score=216.70 Aligned_cols=250 Identities=11% Similarity=0.151 Sum_probs=142.5
Q ss_pred CeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCccc---c-eEecEEEeCCCceEEEEEEcCCCC---CC
Q 008090 215 DTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVK---P-FDTDKLLITPGQTANVLLRTKPYF---PN 287 (578)
Q Consensus 215 ~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~---P-~~~d~v~l~pgeR~dv~v~~~~~~---~~ 287 (578)
..|+|++++|+++++||.|... ...++|.||.... .+.||.+.. | ..+....|.||++++..+++++.. +.
T Consensus 67 pGP~I~~~~Gd~v~v~~~N~l~-~~~siH~HGl~~~-~~~DG~~~~~~~~~~~~~~~~I~PG~~~tY~f~~~~~~gp~~~ 144 (647)
T 1sdd_B 67 LGPVIRAEVDDVIQVRFKNLAS-RPYSLHAHGLSYE-KSSEGKTYEDDSPEWFKEDNAIQPNKTYTYVWHATTRSGPENP 144 (647)
T ss_dssp SCCCEEEETTCEEEEEECCCSS-SCBCCEEETCC----------------------CCBCTTCCEECCEECCTTTSCCSS
T ss_pred cCceEEEeCCCEEEEEEEECCC-CceEEecCcceeC-CCCCCccccCCCCcccccCcccCCCCeEEEEEECCcccCCCCC
Confidence 4589999999999999999985 4567999998765 478997531 2 223456899999999999998731 12
Q ss_pred C----ceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCcccccccccccccccCCCCCCCC
Q 008090 288 A----TFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDTSFAVNFTRKFRSLASVKYPANV 363 (578)
Q Consensus 288 g----~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~l~~~~~p~~~ 363 (578)
| +||+|+|...... ......+ ++|....... . .. +..+. .+......+. .+......-+...
T Consensus 145 G~~c~T~wYHsH~~~~~q-~~~GL~G-~lIV~~~~~~----~---~~--~~~~~-~~~e~~l~l~-~~d~~~~w~~~~~- 210 (647)
T 1sdd_B 145 GSACRAWAYYSAVNPEKD-IHSGLIG-PLLICRKGTL----D---KE--TNMPV-DMREFVLLFM-VFDEKKSWYYDKK- 210 (647)
T ss_dssp SCSEEEEEEECCSSHHHH-HTTTCEE-EEEEECTTSS----C---TT--SCCCS-SCCEEEEEEE-EEEGGGSSCCC---
T ss_pred CCCceEEEEccCCCCccc-ccccCcc-CEEEeeCCCc----c---cc--cCCCC-cceeEEEEEE-eecCccccccccC-
Confidence 7 9999999631100 0011222 3333222111 0 00 01111 1111110000 0000000000000
Q ss_pred CcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhhhcCCCCCcccCCCCCCCCCCCCCCCCC
Q 008090 364 PQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYFFGQNNGVYTTDFPVKPPMPFNYTGTP 443 (578)
Q Consensus 364 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~ 443 (578)
.+..+ .. . +. ........+.+||+.+
T Consensus 211 -----~~~~~--~~--~-----~~--~~~~~~~~~~iNG~~~-------------------------------------- 236 (647)
T 1sdd_B 211 -----PTRSW--RR--A-----SS--EVKNSHEFHAINGMIY-------------------------------------- 236 (647)
T ss_dssp -----------------------------CCCEEEEETTBSS--------------------------------------
T ss_pred -----ccccc--cc--C-----Cc--chhhcCceeccCCEec--------------------------------------
Confidence 00000 00 0 00 0000011233444321
Q ss_pred CCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCC
Q 008090 444 PNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAG 523 (578)
Q Consensus 444 ~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~ 523 (578)
..+.+.++.|++++|.|.|.+. ..+.||||+|||.|+|++. ++.++||+.|.||
T Consensus 237 --------~~p~l~v~~G~~vrlrliN~~~-~~~~h~~hlhG~~f~vi~~-----------------d~~~~d~v~l~pg 290 (647)
T 1sdd_B 237 --------NLPGLRMYEQEWVRLHLLNLGG-SRDIHVVHFHGQTLLENGT-----------------QQHQLGVWPLLPG 290 (647)
T ss_dssp --------CCCCCEEETTCEEEEEEEECCC-TTCCEEEEETTCCEEECSS-----------------SCEEESSEEECTT
T ss_pred --------CCCCeEEcCCCEEEEEEEeCCC-CCcceeEEEcCcEEEEecC-----------------CCcccceEEECCC
Confidence 1234578889999999999652 2358999999999999854 2357999999999
Q ss_pred cEEEEEEEccCceeeEEeeechhhhhccceEEEEEec
Q 008090 524 GWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQN 560 (578)
Q Consensus 524 g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~ 560 (578)
+++.|+|++++||.|+||||+++|++.||++.|.|.+
T Consensus 291 ~r~~v~~~~~~pG~w~~hch~~~h~~~Gm~~~~~V~~ 327 (647)
T 1sdd_B 291 SFKTLEMKASKPGWWLLDTEVGEIQRAGMQTPFLIVD 327 (647)
T ss_dssp EEEEEEEECCSSEEEEEECCCHHHHTTTCEEEEEEEC
T ss_pred eEEEEEEEeccceEeecccCcccccccccccceeeec
Confidence 9999999999999999999999999999999999974
No 50
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=99.82 E-value=6.3e-19 Score=181.06 Aligned_cols=96 Identities=18% Similarity=0.171 Sum_probs=74.8
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCC-cceeeeeCCCcEEEEEEEc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPM-ERNTIGVPAGGWVAIRFFA 532 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~-~rDTv~vpp~g~v~irf~a 532 (578)
..+.++.|++++|++.|.+ ...|++++|+|.|.|+. . |.+- ..|. ++||+.|.||+.+.|.|.+
T Consensus 225 ~~l~v~~Ger~Rl~n~~~~---~~~~~h~i~~h~~~Vi~-d-G~~~----------~~p~~~~dtv~l~pGer~~v~v~a 289 (333)
T 1mzy_A 225 GALKAKVGDNVLFVHSQPN---RDSRPHLIGGHGDLVWE-T-GKFH----------NAPERDLETWFIRGGTAGAALYKF 289 (333)
T ss_dssp GCEEEETTCEEEEEEEESS---SCBCEEEETCCEEEEET-T-CCTT----------SCCEEEESBCCBCTTEEEEEEEEC
T ss_pred cceEecCCCEEEEEECCCC---CccccEEECCCCeEEEe-C-Cccc----------CCCccCcceEEECCCceEEEEEEc
Confidence 4578899999998877643 23444557778888876 2 3211 1122 5899999999999999999
Q ss_pred cCceeeEEeeechhhh-hccceEEEEEecCCCC
Q 008090 533 DNPGVWFMHCHLDVHT-SWGLRMAWIVQNGAQP 564 (578)
Q Consensus 533 dnpG~wl~HCHil~H~-d~GM~~~~~V~~~~~~ 564 (578)
++||.|+||||++.|+ +.|||++|+|....++
T Consensus 290 ~~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~~~~ 322 (333)
T 1mzy_A 290 LQPGVYAYVNHNLIEAVHKGATAHVLVEGEWDN 322 (333)
T ss_dssp CSCEEEEEEESSHHHHHTTCCEEEEEEESCCCT
T ss_pred CCCEEEEEecChhhhHhhCCCEEEEEEcCCCCc
Confidence 9999999999999997 9999999999876543
No 51
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=99.81 E-value=2.6e-21 Score=217.58 Aligned_cols=88 Identities=14% Similarity=0.337 Sum_probs=77.9
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEcc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFAD 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 533 (578)
..+.++.|++++|.|.|.+. ..+.||||||||.|+|++.+ +.++||+.|+||+++.|+|++|
T Consensus 368 ~~l~v~~Ge~vr~rliN~g~-~~~~H~fHlhGh~f~Vv~~d-----------------g~~~Dtv~l~Pg~~~~v~~~ad 429 (770)
T 2r7e_B 368 PGLVMAQDQRIRWYLLSMGS-NENIHSIHFSGHVFTVRKKE-----------------EYKMALYNLYPGVFETVEMLPS 429 (770)
T ss_dssp CCCCCCSSSCEEEECCCCCS-SSCCCEEEBSSCCEECCSSS-----------------CCEESEEECCTTCCCEEEECCS
T ss_pred CCeEEeCCCEEEEEEEeCCC-CcceEEEEEcCCEEEEEecC-----------------CceeeEEEECCCeEEEEEEEeC
Confidence 44678889999999999752 23589999999999998753 1379999999999999999999
Q ss_pred CceeeEEeeechhhhhccceEEEEEe
Q 008090 534 NPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 534 npG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
+||.|+||||+++|++.|||+.|.|.
T Consensus 430 ~pG~w~~hcH~~~H~~~GM~~~~~V~ 455 (770)
T 2r7e_B 430 KAGIWRVECLIGEHLHAGMSTLFLVY 455 (770)
T ss_dssp SCBCCCBCCCSHHHHTTBCCCCCCBC
T ss_pred CCCceEEEeccccccccccccccccc
Confidence 99999999999999999999999984
No 52
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=99.79 E-value=9.9e-18 Score=172.40 Aligned_cols=107 Identities=17% Similarity=0.234 Sum_probs=81.3
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCC--cceeeeeCCCcEEEEEEE
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPM--ERNTIGVPAGGWVAIRFF 531 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~--~rDTv~vpp~g~v~irf~ 531 (578)
..+.++.|++++|+..+.+ ...+++++|||.|.|+. .|.+ ..|. +.||+.|++|+...+.+.
T Consensus 225 ~~l~v~~GervRlin~~~~---~~~~~~~i~gh~~~Vi~--DG~~-----------~~p~~~~~dtv~i~pGer~dvlv~ 288 (336)
T 1oe1_A 225 NALTAKVGETVLLIHSQAN---RDTRPHLIGGHGDWVWE--TGKF-----------ANPPQRDLETWFIRGGSAGAALYT 288 (336)
T ss_dssp GCEEEETTCEEEEEEEESS---SCBCEEETTCCEEEEET--TCCT-----------TSCCEEEESBCCBCTTEEEEEEEE
T ss_pred cceEcCCCCEEEEEecCCC---CccceEEECCcCceEeC--CCcC-----------cCCccccceEEEECCCCcEEEEEE
Confidence 5678999999998665533 35566667999999985 2321 1232 469999999999999999
Q ss_pred ccCceeeEEeeechhhh-hccceEEEEEecCCCCCC-CCCCCCCCCC
Q 008090 532 ADNPGVWFMHCHLDVHT-SWGLRMAWIVQNGAQPNQ-TLPPPPSDLP 576 (578)
Q Consensus 532 adnpG~wl~HCHil~H~-d~GM~~~~~V~~~~~~~~-~~~~~p~~~~ 576 (578)
+++||.|+||||.+.|. +.||+++|.|.+..++.. .....|.-.|
T Consensus 289 ~~~pG~y~~~~h~~~~~~~~G~~~~~~V~~~~~~~~~~~~~~~~~~~ 335 (336)
T 1oe1_A 289 FKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWNDDLMKQIKAPAPIP 335 (336)
T ss_dssp CCSCEEEEEEESSHHHHHTTSCEEEEEEESCCCTTTCCCSSCSCCCC
T ss_pred cCCCceEEEEechhhccccCCCeEEEEECCCCChHHhccCCCCCCCC
Confidence 99999999999999985 999999999987665443 3344444443
No 53
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=99.78 E-value=3.3e-18 Score=182.68 Aligned_cols=250 Identities=13% Similarity=0.115 Sum_probs=157.6
Q ss_pred ceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCC-CeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceE
Q 008090 197 DAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALN-DELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTA 275 (578)
Q Consensus 197 ~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~-~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~ 275 (578)
..+++||+. ..|.|+++.|++++||+.|.... ..+.+|+||+. ..||... +..|.||+++
T Consensus 49 ~~~~~ng~~---------pgp~i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~----~~dG~~~------~~~i~pg~~~ 109 (442)
T 2zoo_A 49 VFWSFGETV---------PGSFIRVREGDEIEFNLSNHPSSKMPHNIDLHAVT----GPGGGAE------SSFTAPGHTS 109 (442)
T ss_dssp EEEEETTBS---------SCCBEEEETTCEEEEEEEECTTCSSCBCCEETTCC----SGGGGGG------GCCBCTTCEE
T ss_pred EEEEECCcC---------CCCcEEEeCCCEEEEEEEECCCCCCCCCEEecCCc----CCCCCCc------cEEECCCCEE
Confidence 679999985 34889999999999999999643 46679999975 4677532 2358999999
Q ss_pred EEEEEcCCCCCCCceEEEEeecCCCCCCCCCcceEEEEEEeCCCCCCcCccccCCCCCCCCCCCCccccccccccccccc
Q 008090 276 NVLLRTKPYFPNATFFMQARPYFSGMGTIDNSTTAGILEYKHPSNHSISSKKLQLYKPTLPSINDTSFAVNFTRKFRSLA 355 (578)
Q Consensus 276 dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~l~ 355 (578)
++.|+++++ |.||+|||....... ......+.|.+..... ++..+ ......+.+ .. +
T Consensus 110 ~y~f~~~~~---Gt~~yH~H~~~~~~~--~~~Gl~G~~iv~~~~~--------------~~~~d-~e~~l~l~d-~~-~- 166 (442)
T 2zoo_A 110 TFNFKALNP---GLYIYHCATAPVGMH--IANGMYGLILVEPKEG--------------LAPVD-REYYLVQGD-FY-T- 166 (442)
T ss_dssp EEEEECCSC---EEEEEECCCSSHHHH--HHTTCEEEEEEECTTC--------------CCCCS-EEEEEEEEE-EC-B-
T ss_pred EEEEEcCCC---eEEEEecCCCChHHH--HhCccEEEEEEeCCCC--------------CCCCC-ceEEEEeee-ee-c-
Confidence 999999887 999999974211000 0012234444443211 11111 000000000 00 0
Q ss_pred CCCCCCCCCcccceEEEEEecCCCCCCCCCCcccCCCCCeeEeeecceeeecCcchhhhhhhcCCCCCcccCCCCCCCCC
Q 008090 356 SVKYPANVPQIVDRKFFFTVGLGSNPCPKNTTCQGPNGTKFSASVNNVSFVLPSTAILQSYFFGQNNGVYTTDFPVKPPM 435 (578)
Q Consensus 356 ~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~ 435 (578)
... ... .... ..... .+. ....-.+.+||+.+.
T Consensus 167 ~~~----~~~--~~~~--~~~~~--------~~~--~~~~~~~liNG~~~~----------------------------- 199 (442)
T 2zoo_A 167 KGE----FGE--AGLQ--PFDMA--------KAI--DEDADYVVFNGSVGS----------------------------- 199 (442)
T ss_dssp SSC----TTC--CEEE--CBCHH--------HHH--TTCCSEEEETTSTTT-----------------------------
T ss_pred cCc----ccc--cccc--cCChh--------Hhc--cCCCCEEEECCCcCC-----------------------------
Confidence 000 000 0000 00000 000 000001233332110
Q ss_pred CCCCCCCCCCCCccCCCeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcc
Q 008090 436 PFNYTGTPPNNTNVSNGTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMER 515 (578)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~r 515 (578)
. .....+.++.|++++|.|.|.+. ...|+||+||+.|+|++..++. ..|.+.
T Consensus 200 -------------~-~~~~~l~v~~G~~vrlrliN~~~--~~~~~~~i~g~~~~vi~~DG~~------------~~p~~~ 251 (442)
T 2zoo_A 200 -------------T-TDENSLTAKVGETVRLYIGNGGP--NLVSSFHVIGEIFDTVYVEGGS------------LKNHNV 251 (442)
T ss_dssp -------------T-SGGGCEEEETTCEEEEEEEEEES--SCCEEEEEETCCBSEEEGGGSS------------CEECSB
T ss_pred -------------C-CCCCceEeCCCCEEEEEEEeCCC--CCceeeEEcCCEEEEEecCCcc------------CCCccc
Confidence 0 00135678899999999999652 4689999999999999875321 226789
Q ss_pred eeeeeCCCcEEEEEEEccCceeeEEeeechhh-hhccceEEEEEecCCC
Q 008090 516 NTIGVPAGGWVAIRFFADNPGVWFMHCHLDVH-TSWGLRMAWIVQNGAQ 563 (578)
Q Consensus 516 DTv~vpp~g~v~irf~adnpG~wl~HCHil~H-~d~GM~~~~~V~~~~~ 563 (578)
|++.|.||+...+.|+++++|.|.+|||.+.| .+.||+++|.|.....
T Consensus 252 ~~~~l~pg~r~~v~v~~~~~G~y~~~~~~~~~~~~~g~~a~l~v~~~~~ 300 (442)
T 2zoo_A 252 QTTLIPAGGAAIVEFKVEVPGTFILVDHSIFRAFNKGALAMLKVEGPDD 300 (442)
T ss_dssp SEEEECTTEEEEEEEECCSCEEEEEEESSTHHHHTTSCEEEEEEESCCC
T ss_pred eEEEECCCeeEEEEEEcCCCCeEEEEecccccccccCceEEEEecCCCC
Confidence 99999999999999999999999999999999 5999999999987654
No 54
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=99.77 E-value=1.9e-17 Score=176.62 Aligned_cols=235 Identities=11% Similarity=0.079 Sum_probs=153.7
Q ss_pred eEEEEEEEEEEeeecC-----------ceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCC-CCceeEEE-eeeeeccCC
Q 008090 33 TRHYTFNIKYHNVTRL-----------CHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHV-SNNVTIHW-HGVRQVTSG 99 (578)
Q Consensus 33 ~~~~~l~~~~~~~~~~-----------g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l-~~~~siH~-HG~~~~~~~ 99 (578)
++++.|.++.-....+ |.....+++||+. .|+|+|++| ++|+||.|.. .....+|+ ||......+
T Consensus 152 ~~e~~l~l~D~~~~~~~~~~~~~~~~~~~~~d~~liNG~~-~p~~~v~~g-~~RlRliNa~~~~~~~~~i~dg~~~~vi~ 229 (451)
T 2uxt_A 152 VDDFPVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNSRRYQLQMNDGRPLHVIS 229 (451)
T ss_dssp TTEEEEEEEEEEECTTSCEECCCCSSSCCCCSEEEETTEE-SCEEEECSS-EEEEEEEECCSSCCEEEEETTSCCEEEEE
T ss_pred CceEEEEEEeeecCCCCceecccccCCCCcCCEEEECCcc-cceEEecCC-EEEEEEEccCCceeEEEEECCCCeEEEEE
Confidence 4567777765443332 3345789999995 599999999 9999999998 45788999 897766554
Q ss_pred CCCCCC-----CccccccCCCCeEEEEEEEcCCCCceeeecCcchhcccc-------------eeeEEEeCCCCCCCCCC
Q 008090 100 WADGPA-----YVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLRSTL-------------YGPIIILPKRNESYPFQ 161 (578)
Q Consensus 100 ~~DG~~-----~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~~Gl-------------~G~liV~~~~~~~~p~~ 161 (578)
.||.+ .+.+..|.||||+++.+++ .+.|+||++++......|+ ...+-.........+
T Consensus 230 -~DG~~~~~P~~~~~l~l~pgeR~dvlv~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~-- 305 (451)
T 2uxt_A 230 -GDQGFLPAPVSVKQLSLAPGERREILVDM-SNGDEVSITCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPLV-- 305 (451)
T ss_dssp -CSSSEEEEEEEESSEEECTTCEEEEEEEC-TTCCCEEEEC----------------CCCCSCCEEEEEEECSCCC----
T ss_pred -eCCCccCCceEeceEEECceeEEEEEEEe-CCCCEEEEEecCccccccccccccccCCCCCCcceEEEEecCCCcCc--
Confidence 89964 2456889999999999997 5689999998864432221 111111111100000
Q ss_pred CCCCcEeEEeeecccCChH-HHHHHHHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeE
Q 008090 162 KPHKEIPILFGEWFNVDPE-AIISQALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDEL 240 (578)
Q Consensus 162 ~~~~e~~l~~~d~~~~~~~-~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~ 240 (578)
..+.+..+..+...... ......... ..|+|||+.++. ..+.+.++.|++++|+|+|. ..+
T Consensus 306 --~~~~p~~L~~~~~~~~~~~~~~~~~l~-------~~~~iNg~~f~~------~~~~~~~~~G~~~~~~l~N~---~~H 367 (451)
T 2uxt_A 306 --TDSLPMRLLPTEIMAGSPIRSRDISLG-------DDPGINGQLWDV------NRIDVTAQQGTWERWTVRAD---EPQ 367 (451)
T ss_dssp ----CCCSCSSSSCCCCCCCSEEEEEEEC-------SSSSBTTBCCCT------TCCCEEEETTCEEEEEEEEE---EEE
T ss_pred --cccCccccCCCCCCCCCCcceEEEEEe-------eEEEECCEeCCC------CCCcEEcCCCCEEEEEEECC---CCc
Confidence 00000000000000000 000000000 046799998642 23568999999999999998 356
Q ss_pred EEEEcCceEEEEeecCCcc---cceEecEEEeCCCceEEEEEEcCCCCCCCc----eEEEEee
Q 008090 241 FFSIANHTLTVVEADAVYV---KPFDTDKLLITPGQTANVLLRTKPYFPNAT----FFMQARP 296 (578)
Q Consensus 241 ~~~l~gh~~~via~DG~~v---~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~----y~l~~~~ 296 (578)
.||||||.|+|++.||... +|.+.|++.| |+++.|.|+++++ |. |++|||.
T Consensus 368 P~HLHGh~F~Vl~~~G~~~~~~~p~~rDTv~v--g~~~~i~~~~dnp---g~~~g~w~~HCHi 425 (451)
T 2uxt_A 368 AFHIEGVMFQIRNVNGAMPFPEDRGWKDTVWV--DGQVELLVYFGQP---SWAHFPFYFNSQT 425 (451)
T ss_dssp EEEETTCEEEEEEETTBCCCGGGSSCBSEEEE--EEEEEEEEECCSC---CBTTBCEEEEESS
T ss_pred CeEECCceEEEEeeCCcCCCcccCCCccEEEE--CCEEEEEEEeCCC---CCCCCceEEeCCc
Confidence 6999999999999999865 4788999999 9999999999987 55 9999995
No 55
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=99.77 E-value=1.6e-17 Score=176.87 Aligned_cols=229 Identities=15% Similarity=0.154 Sum_probs=163.7
Q ss_pred eeEEEEEEEEEEeeec------------CceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCC-CCceeEEEeeeeeccC
Q 008090 32 ITRHYTFNIKYHNVTR------------LCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHV-SNNVTIHWHGVRQVTS 98 (578)
Q Consensus 32 ~~~~~~l~~~~~~~~~------------~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~ 98 (578)
..+++.|.++.-.... .|.....+++||+. .|.|+|++| ++|+||.|.. .....+|++|......
T Consensus 145 ~~~e~~l~l~D~~~~~~~~~~~~~~~~~~g~~~~~~~iNG~~-~p~l~v~~g-~~RlRliN~~~~~~~~~~i~gh~~~vi 222 (439)
T 2xu9_A 145 EAEEHLLVLKDLALQGGRPAPHTPMDWMNGKEGDLVLVNGAL-RPTLVAQKA-TLRLRLLNASNARYYRLALQDHPLYLI 222 (439)
T ss_dssp TSEEEEEEEEEECEETTEECCCCHHHHHHCCCCSEEEETTEE-SCEEECSSS-EEEEEEEECCSSCCEEEEETTBCEEEE
T ss_pred CCCcEEEEEEeeeeCCCCcCCCCccccccCCCCCEEEECCcc-CCcEEecCC-eEEEEEEecCCCceEEEEECCceEEEE
Confidence 3567777776432221 23456789999996 599999999 9999999998 4578999999877665
Q ss_pred CCCCCCCC-----ccccccCCCCeEEEEEEEcCCCCceeeecCcchhc----ccc--------------eee--EEEeCC
Q 008090 99 GWADGPAY-----VTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLR----STL--------------YGP--IIILPK 153 (578)
Q Consensus 99 ~~~DG~~~-----~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~----~Gl--------------~G~--liV~~~ 153 (578)
+ .||.+- +....|.||||++..+++ .++|.||++++..... .|| ... +.+...
T Consensus 223 ~-~DG~~~~~p~~~~~l~l~pgeR~dv~v~~-~~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 300 (439)
T 2xu9_A 223 A-ADGGFLEEPLEVSELLLAPGERAEVLVRL-RKEGRFLLQALPYDRGAMGMMDMGGMAHAMPQGPSRPETLLYLIAPKN 300 (439)
T ss_dssp E-ETTEEEEEEEEESCEEECTTCEEEEEEEC-CSSEEEEEEEECCCCCCEEEECSSSCCEEEECCSCCCEEEEEEEECSS
T ss_pred e-cCCCCCCCceEeceEEECCceeEEEEEEc-CCCceEEEEecccccCCccccccccccccccCCCCCcceeEEEEecCC
Confidence 4 799652 345679999999999997 5699999999742211 122 112 222221
Q ss_pred CCCCCCCCCC------------CCcEeEEeeecccCChHHHHHHHHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEE
Q 008090 154 RNESYPFQKP------------HKEIPILFGEWFNVDPEAIISQALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKV 221 (578)
Q Consensus 154 ~~~~~p~~~~------------~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v 221 (578)
.. ..+.+.. ++++.+.+.. .+..|+|||+.+.. ....+.+
T Consensus 301 ~~-~~~~p~~l~~~~~l~~~~~~r~~~l~~~~---------------------~g~~~~iNg~~~~~------~~~~~~~ 352 (439)
T 2xu9_A 301 PK-PLPLPKALSPFPTLPAPVVTRRLVLTEDM---------------------MAARFFINGQVFDH------RRVDLKG 352 (439)
T ss_dssp CC-CCCCCSCCCCCCCCCCCSEEEEEEEEEEG---------------------GGTEEEETTBCCCT------TCCCEEE
T ss_pred Cc-cccCcccCCCcccCCCCCcceEEEEEeec---------------------cCceEeECCEECCC------CCCceec
Confidence 11 1111100 0111111110 01368999998632 2345899
Q ss_pred eCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcc-cceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEee
Q 008090 222 KPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYV-KPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 222 ~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v-~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
+.|++++|+|.|.+...|. ||||||.|+|++.+|... .|.+.|++.|.||+++.|.|+++++ |.|++|||.
T Consensus 353 ~~g~~~~~~~~N~~~~~HP-~HLHG~~F~Vl~~~g~~~~~p~~rDTv~v~p~~~v~i~f~adnp---G~w~~HCHi 424 (439)
T 2xu9_A 353 QAQTVEVWEVENQGDMDHP-FHLHVHPFQVLSVGGRPFPYRAWKDVVNLKAGEVARLLVPLREK---GRTVFHCHI 424 (439)
T ss_dssp CTTCEEEEEEEECSSSCEE-EEESSCCBEEEEETTEECSSCCCBSEEEECTTCEEEEEEECCSC---EEEEEEESS
T ss_pred CCCCEEEEEEEcCCCCCCC-ceeCCCcEEEEeeCCCCCCCCCCeEEEEeCCCCEEEEEEEcCCC---CCEEEECCc
Confidence 9999999999999865555 999999999999999866 6889999999999999999999888 999999995
No 56
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=99.69 E-value=2.7e-15 Score=162.23 Aligned_cols=256 Identities=14% Similarity=0.123 Sum_probs=161.1
Q ss_pred EEEEEEEEEeeecCce-----eeeEEEECCCCC--------CcEEEEecCCEEEEEEEeCC-CCceeEEEeeeeeccCCC
Q 008090 35 HYTFNIKYHNVTRLCH-----TRNIISVNGQFP--------GPSLVAREGDRVLIKVTNHV-SNNVTIHWHGVRQVTSGW 100 (578)
Q Consensus 35 ~~~l~~~~~~~~~~g~-----~~~~~~~Ng~~p--------gP~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~ 100 (578)
++.|.++.-....++. ....+++||+.. .|+|+|++|+++|+||.|.. .....+|++|......+
T Consensus 143 e~~l~l~Dw~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~v~~g~~~RlRliN~~~~~~~~~~i~gh~~~vi~- 221 (503)
T 1hfu_A 143 NTIITLADWYHIPAPSIQGAAQPDATLINGKGRYVGGPAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIE- 221 (503)
T ss_dssp TSEEEEEEECSSCGGGCC---CCSEEEETTBCCBTTCCCCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEEEE-
T ss_pred eEEEEEcccccCChHHhcCCCCCCEEEECcccccCCCCCCcceEEEEcCCCEEEEEEEecCCcccEEEEEcCceEEEEe-
Confidence 4566665443333332 246789999853 28999999999999999998 45788999988776654
Q ss_pred CCCCC----CccccccCCCCeEEEEEEEcCCCCceeeecCcchh-------c-ccceeeEEEeCCCCCCCCCCCCCCcEe
Q 008090 101 ADGPA----YVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWL-------R-STLYGPIIILPKRNESYPFQKPHKEIP 168 (578)
Q Consensus 101 ~DG~~----~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~-------~-~Gl~G~liV~~~~~~~~p~~~~~~e~~ 168 (578)
.||.+ .+....|.||||++..+++.+.+|.||.+++.... . .++..+++.........|......+.
T Consensus 222 ~DG~~~~p~~~~~l~l~pgeR~dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~p~~~~~~~~- 300 (503)
T 1hfu_A 222 VDGELTEPHTVDRLQIFTGQRYSFVLDANQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAANADPTTSANPNP- 300 (503)
T ss_dssp ETTEEEEEEEESBEEECTTCEEEEEEECCSCSSEEEEEEEESSCGGGGGGCCGGGTTEEEEEETTSCSSCCCCCCCSSC-
T ss_pred ccCccccccccCeEEEcccceEEEEEEcCCCccceeeeeccccCCcccccccCCCceEEEEEECCCCCCCCCCCCCCcc-
Confidence 89964 23456789999999999985557999999875311 1 23323333322111111100000000
Q ss_pred EEeeecccCCh--HHH----HH-H---HHhcCCCCCCCceEEEcCccCCCccc-------C--------CCCeeEEEEeC
Q 008090 169 ILFGEWFNVDP--EAI----IS-Q---ALQTGAGPNVSDAYTINGLPGPLYNC-------S--------SKDTYKLKVKP 223 (578)
Q Consensus 169 l~~~d~~~~~~--~~~----~~-~---~~~~g~~~~~~~~~liNG~~~~~~~~-------~--------~~~~~~l~v~~ 223 (578)
..+.+...... ... .. . ...-... .....|+|||+.+..... + ......+.++.
T Consensus 301 ~~l~~~~l~p~~~~~~p~~~~~~~~~~~~~l~~~-~~~~~~~iNg~~~~~~~~P~l~~~~~g~~~~~~~~~~~~~~~v~~ 379 (503)
T 1hfu_A 301 AQLNEADLHALIDPAAPGIPTPGAADVNLRFQLG-FSGGRFTINGTAYESPSVPTLLQIMSGAQSANDLLPAGSVYELPR 379 (503)
T ss_dssp CBCCGGGCBBSSSCSCSSCSSTTCSSEEEECCEE-EETTEEEETTBCCCCCSSCHHHHHHTTCCSGGGSSSTTSEEEECS
T ss_pred CCCccccccccCccCCCCcccCCcceEEEEEEee-ccCceEEECCCccCCCCCcchhhhhcCCcccccCCCCceEEEccC
Confidence 00000000000 000 00 0 0000000 011268999998642110 0 01235789999
Q ss_pred CcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcc----cceEecEEEe-CCCceEEEEEEcCCCCCCCceEEEEee
Q 008090 224 GKTYLLRLINAALNDELFFSIANHTLTVVEADAVYV----KPFDTDKLLI-TPGQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 224 G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v----~P~~~d~v~l-~pgeR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
|++++++++|......+.||||||.|+|++.+|... .|...|++.| .||+++.|.|+++++ |.|++|||.
T Consensus 380 g~~vei~l~~n~~~~~HP~HLHGh~F~Vl~~~~~~~~n~~~p~~rDTV~V~ppg~~v~irf~adnP---G~W~~HCHi 454 (503)
T 1hfu_A 380 NQVVELVVPAGVLGGPHPFHLHGHAFSVVRSAGSSTYNFVNPVKRDVVSLGVTGDEVTIRFVTDNP---GPWFFHCHI 454 (503)
T ss_dssp SCEEEEEEECCSTTCCCEEEETTCCEEEEECTTCCCCCCSSBCEESEEECCSTTCEEEEEEECCSC---EEEEEEESS
T ss_pred CCEEEEEEECCCCCCCCCEEEecceEEEEecCCCCccccCCCCeeeeEEecCCCceEEEEEEcCCC---eeeeEecCc
Confidence 999999999543334455999999999999998752 6889999999 799999999999998 999999995
No 57
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=99.69 E-value=2.2e-15 Score=163.55 Aligned_cols=235 Identities=16% Similarity=0.173 Sum_probs=153.4
Q ss_pred eeEEEECCCCC---------CcEEEEecCCEEEEEEEeCCC-CceeEEEeeeeeccCCCCCCCC----CccccccCCCCe
Q 008090 52 RNIISVNGQFP---------GPSLVAREGDRVLIKVTNHVS-NNVTIHWHGVRQVTSGWADGPA----YVTQCPIQTGQS 117 (578)
Q Consensus 52 ~~~~~~Ng~~p---------gP~i~v~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DG~~----~~~q~~i~pG~~ 117 (578)
...+++||+.. -|+|+|++|+++|+||.|... ....+|++|......+ .||.+ .+....|.||||
T Consensus 191 ~d~~liNG~~~~~~~~~~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~~vi~-~DG~~~~p~~~~~l~l~pgqR 269 (521)
T 1v10_A 191 PDTTLINGLGRNSANPSAGQLAVVSVQSGKRYRFRIVSTSCFPNYAFSIDGHRMTVIE-VDGVSHQPLTVDSLTIFAGQR 269 (521)
T ss_dssp CSEEEETTBCCCSSCGGGSCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEEEE-ETTEEEEEEEESBEEECTTCE
T ss_pred CCEEEECCcccCCCCCCCCCceEEEECCCCEEEEEEEecCCcccEEEEECCCeEEEEe-cCCccccceeeeeEEEcccce
Confidence 46789999853 189999999999999999984 5788999998776654 89964 134567899999
Q ss_pred EEEEEEEcCCCCceeeecCcchh---c-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccC-----Ch-HHHHH-H-
Q 008090 118 YTYNFTITGQRGTLLWHAHISWL---R-STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNV-----DP-EAIIS-Q- 185 (578)
Q Consensus 118 ~~y~f~~~~~~Gt~wYH~H~~~~---~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~-----~~-~~~~~-~- 185 (578)
++..+++.+.+|.||.+++.... . .|+..+++.........|..... . ...+.+.... .. ..... .
T Consensus 270 ~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~ail~y~~~~~~~p~~~~~-~-~~~~~~~~l~p~~~~~~p~~~~~~~~ 347 (521)
T 1v10_A 270 YSVVVEANQAVGNYWIRANPSNGRNGFTGGINSAIFRYQGAAVAEPTTSQN-S-GTALNEANLIPLINPGAPGNPVPGGA 347 (521)
T ss_dssp EEEEEECCSCSSEEEEEEEESSSSCSCGGGTTEEEEEETTCCSCCCCCCCC-C-SCBCCGGGCCBSSCCCCSSCSSTTCS
T ss_pred EEEEEEcCCCCCceeeeeccccccccCCCCceeEEEEECCCCCCCCCCCCC-c-ccccchhhcccCCcccCCCcccCCcc
Confidence 99999985557999999876421 1 24433444332211111110000 0 0000000000 00 00000 0
Q ss_pred ----HHhcCCCCCCCceEEEcCccCCCccc-------------C--CCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcC
Q 008090 186 ----ALQTGAGPNVSDAYTINGLPGPLYNC-------------S--SKDTYKLKVKPGKTYLLRLINAALNDELFFSIAN 246 (578)
Q Consensus 186 ----~~~~g~~~~~~~~~liNG~~~~~~~~-------------~--~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~g 246 (578)
.+..+. ......|+|||+.+..... + ......+.++.|++++++++| ... +.|||||
T Consensus 348 ~~~~~l~~~~-~~~~~~~~iNg~~~~~~~~P~l~~~~~g~~~~~~~~~~~~~~~v~~g~~vei~l~N--~~~-HP~HLHG 423 (521)
T 1v10_A 348 DINLNLRIGR-NATTADFTINGAPFIPPTVPVLLQILSGVTNPNDLLPGGAVISLPANQVIEISIPG--GGN-HPFHLHG 423 (521)
T ss_dssp SEEEECCEEC-CSSSSCCEESSCCCCCCSSCHHHHHHHTCCCGGGSSSTTTEEEECTTCEEEEEEEC--CBS-CEEEESS
T ss_pred eEEEEEEEec-CCceeEEEECCCcccCCCCchhhhhhcCCcccccCCCCceEEEecCCCEEEEEEcC--CCC-CCEEEcc
Confidence 000000 0011258899998742110 0 012356899999999999999 344 4599999
Q ss_pred ceEEEEeecCCc----ccceEecEEEe-CCCceEEEEEEcCCCCCCCceEEEEee
Q 008090 247 HTLTVVEADAVY----VKPFDTDKLLI-TPGQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 247 h~~~via~DG~~----v~P~~~d~v~l-~pgeR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
|.|+|++.+|.. ..|...|++.| .||+++.|.|+++++ |.|++|||.
T Consensus 424 h~F~Vl~~~~~~~~n~~~p~~rDTV~V~p~gg~v~Irf~aDNP---G~W~~HCHi 475 (521)
T 1v10_A 424 HNFDVVRTPGSSVYNYVNPVRRDVVSIGGGGDNVTFRFVTDNP---GPWFLHCHI 475 (521)
T ss_dssp CCEEEEECTTCSCCCCSSCCEESEEECCBSSCEEEEEEECCSC---EEEEEEESC
T ss_pred ceEEEEecCCCCccccCCCCeeeeEEeCCCCcEEEEEEEeCCC---eeEEEeeCh
Confidence 999999999875 26889999999 799999999999998 999999995
No 58
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=99.68 E-value=2e-15 Score=161.24 Aligned_cols=238 Identities=14% Similarity=0.162 Sum_probs=160.7
Q ss_pred eEEEEEEEEEEeeecCc-------------eeeeEEEECCCCCCcEEEEecCCEEEEEEEeCC-CCceeEEEeeeeeccC
Q 008090 33 TRHYTFNIKYHNVTRLC-------------HTRNIISVNGQFPGPSLVAREGDRVLIKVTNHV-SNNVTIHWHGVRQVTS 98 (578)
Q Consensus 33 ~~~~~l~~~~~~~~~~g-------------~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~ 98 (578)
.++| |.++.-....+| .....+++||+. .|+|.|++|+ |+||.|.. .+...+|++|......
T Consensus 180 ~~~~-l~l~D~~~~~~g~~~~~~~~~~~~g~~gd~~lvNG~~-~p~l~v~~g~--RlRliNa~~~~~~~l~i~g~~~~vI 255 (481)
T 3zx1_A 180 KEKD-LMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQF-KPKIKLATNE--RIRIYNATAARYLNLRIQGAKFILV 255 (481)
T ss_dssp EEEE-EEEEEECCBTTSCCCCCCHHHHHHCCCCSEEEETTEE-SCEEEEETTE--EEEEEECCSSCCEEEEETTCEEEEE
T ss_pred Ccee-EEEEEEeccCCCccccccchhhccCCcCCEEEECCcc-CceEEecCCC--EEEEEecCCCeEEEEEECCCceEEE
Confidence 3555 767655444443 244689999996 4899999999 99999998 5778999999886665
Q ss_pred CCCCCCC-----CccccccCCCCeEEEEEEEcCCCCceeeecCcchhc---------ccceeeEEEeCCCCCCCC-----
Q 008090 99 GWADGPA-----YVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLR---------STLYGPIIILPKRNESYP----- 159 (578)
Q Consensus 99 ~~~DG~~-----~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~---------~Gl~G~liV~~~~~~~~p----- 159 (578)
+ .||.. .+....|.||||++..+++ .+.|+|...++..... .....-+.+... +...|
T Consensus 256 a-~DGg~~~~P~~~~~l~l~pgeR~dvlv~~-~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~lP~~l~~ 332 (481)
T 3zx1_A 256 G-TDGGLIEKTIYKEELFLSPASRVEVLIDA-PKDGNFKLESAYYDRDKMMVKEEPNTLFLANINLKKE-NVELPKNLKI 332 (481)
T ss_dssp E-ETTEEEEEEEEESSEEECTTCEEEEEEEC-SSCEEEEEEECCCCCCCSSCCCCCCCEEEEEEEEECC-CCCCCSCSCC
T ss_pred E-cCCCccCCceEeCeEEECCccEEEEEEEc-CCCcEEEEEEecccccCccccCCCCceeEEEEecCCC-CccCCccccC
Confidence 4 89732 2356779999999999997 5677777665532210 001111222211 11111
Q ss_pred ---CCCCCCcEeEEeeecccCC-------hHHHHHHHHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEE
Q 008090 160 ---FQKPHKEIPILFGEWFNVD-------PEAIISQALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLL 229 (578)
Q Consensus 160 ---~~~~~~e~~l~~~d~~~~~-------~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rl 229 (578)
.+..+....+.++.....- .... ...+ ...++|||+.+. ...+.+.++.|++++|
T Consensus 333 ~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~iNG~~~~------~~~~~~~~~~G~~v~w 397 (481)
T 3zx1_A 333 FKPSEEPKEFKEIIMSEDHMQMHGMMGKSEGEL-KIAL--------ASMFLINRKSYD------LKRIDLSSKLGVVEDW 397 (481)
T ss_dssp CCCCCCCCEEEEEEEEECCSTTTTGGGCCHHHH-HHHH--------HTTEEETTBCCC------TTCCCEEEETTCCEEE
T ss_pred CCCCCCCCcEEEEEEeccchhcccccccccccc-cccc--------cceeEECCEeCC------CCCceEEeCCCCEEEE
Confidence 1112233334443211000 0000 0000 134999999863 1346799999999999
Q ss_pred EEEecCCCCeEEEEEcCceEEEEee--cCCcc---cceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEee
Q 008090 230 RLINAALNDELFFSIANHTLTVVEA--DAVYV---KPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 230 RliN~~~~~~~~~~l~gh~~~via~--DG~~v---~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
+|+|.+.. .+.||||||.|+|++. +|... ++.+.|++.|.||+++.|.++++++ |.|++|||.
T Consensus 398 ~l~N~~~~-~Hp~HlHG~~F~vl~~~~~g~~~~~~~~~~kDTv~v~Pg~~~~i~~~~d~p---G~w~~HCHi 465 (481)
T 3zx1_A 398 IVINKSHM-DHPFHIHGTQFELISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFK---GLRMYHCHI 465 (481)
T ss_dssp EEEECSSS-CEEEEETTCCEEEEEEEETTEEEECSSCCEESEEEECTTCEEEEEECCCSC---EEEEEEESS
T ss_pred EEEcCCCC-ceeEEEeccEEEEEEecccCCCCCcccCcccceEEECCCCEEEEEEEcCCC---eeEEEEcCC
Confidence 99998755 4559999999999999 99865 3678999999999999999999888 999999995
No 59
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=99.64 E-value=1.6e-14 Score=155.15 Aligned_cols=239 Identities=15% Similarity=0.130 Sum_probs=152.2
Q ss_pred eeeEEEECCCC---------CCcEEEEecCCEEEEEEEeCC-CCceeEEEeeeeeccCCCCCCCC----CccccccCCCC
Q 008090 51 TRNIISVNGQF---------PGPSLVAREGDRVLIKVTNHV-SNNVTIHWHGVRQVTSGWADGPA----YVTQCPIQTGQ 116 (578)
Q Consensus 51 ~~~~~~~Ng~~---------pgP~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~~DG~~----~~~q~~i~pG~ 116 (578)
....+++||+- +-|.|+|++|+++|+||.|.. .....++++|......+ .||.+ .+....|.|||
T Consensus 167 ~~d~~liNG~g~~~~~~~~~~~~~~~v~~G~~~RlRliN~~~~~~~~~~i~gh~~~via-~DG~~~~P~~~~~l~i~pGq 245 (495)
T 3t6v_A 167 TADSTLIDGLGRTHVNVAAVPLSVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTIIE-TDGVDSQELTVDEIQIFAAQ 245 (495)
T ss_dssp CCSEEEETTBCCBSSSCCCCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEEEE-ETTEEEEEEEESBEEECTTC
T ss_pred CCcEEEECCcCcCCCCcccCCceEEEEcCCCEEEEEEEecCCCeeEEEEECCCeEEEEE-eCCcccCCEEeeeEEEcCce
Confidence 45689999963 337999999999999999987 46678999888766654 89964 13456799999
Q ss_pred eEEEEEEEcCCCCceeeecCcchhc----ccceeeEEEeCCCCCCCCCCCCCC-cEeEEeeecccCChH-------HH--
Q 008090 117 SYTYNFTITGQRGTLLWHAHISWLR----STLYGPIIILPKRNESYPFQKPHK-EIPILFGEWFNVDPE-------AI-- 182 (578)
Q Consensus 117 ~~~y~f~~~~~~Gt~wYH~H~~~~~----~Gl~G~liV~~~~~~~~p~~~~~~-e~~l~~~d~~~~~~~-------~~-- 182 (578)
|++..+++.+.+|.||.++...... .|..-+++.........|...... ... .+.+....... ..
T Consensus 246 R~dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~ail~Y~~~~~~~p~~~~~~~~~~-~~~~~~L~p~~~~~~p~~~~~~ 324 (495)
T 3t6v_A 246 RYSFVLNANQPVGNYWIRANPNSGGEGFDGGINSAILRYDGATTADPVTVASTVHTK-CLIETDLHPLSRNGVPGNPHQG 324 (495)
T ss_dssp EEEEEEECCSCSSEEEEEEEESSSSCSCGGGTTEEEEEETTSCSSCCCCCCCSSCSS-BCCGGGCCBSSCCCCSSCSSTT
T ss_pred EEEEEEECCCCCceEEEEEecccCccccCCCceEEEEEECCCCCCCCCCCCCCCCcc-ccccccccccccccCCCccCCC
Confidence 9999999855569999987643111 233223333322111111100000 000 00000000000 00
Q ss_pred -HHHHHhcCCCCCCCceEEEcCccCCCccc-------C--------CCCeeEEEEeCCcEEEEEEE-ecCCCCeEEEEEc
Q 008090 183 -ISQALQTGAGPNVSDAYTINGLPGPLYNC-------S--------SKDTYKLKVKPGKTYLLRLI-NAALNDELFFSIA 245 (578)
Q Consensus 183 -~~~~~~~g~~~~~~~~~liNG~~~~~~~~-------~--------~~~~~~l~v~~G~~~rlRli-N~~~~~~~~~~l~ 245 (578)
.+...... .......|+|||+.+..... + ......+.++.|++|+|.|. |.+.. .+.||||
T Consensus 325 ~~d~~~~l~-~~~~~~~w~iNg~s~~~~~~P~L~~~~~g~~~~~~~~~~~~v~~~~~g~~V~ivl~~n~~~~-~HP~HLH 402 (495)
T 3t6v_A 325 GADCNLNLS-LGFACGNFVINGVSFTPPTVPVLLQICSGANTAADLLPSGSVISLPSNSTIEIALPAGAAGG-PHPFHLH 402 (495)
T ss_dssp CSSEEEECC-EEEETTEEEETTBCCCCCSSCHHHHHHTTCCSSTTSSSTTSEEEECTTCEEEEEEECCSSSC-CCEEEET
T ss_pred CCcEEEEEE-EEecCcEEEEcCEecCCCCCcchhhhhcCCcCcccccCCcceEEecCCCEEEEEEccCCCCC-Ccceeec
Confidence 00000000 00012368999987632110 0 01234689999999999998 55544 4559999
Q ss_pred CceEEEEeecCCcc----cceEecEEEeCC-CceEEEEEEcCCCCCCCceEEEEee
Q 008090 246 NHTLTVVEADAVYV----KPFDTDKLLITP-GQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 246 gh~~~via~DG~~v----~P~~~d~v~l~p-geR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
||.|+|++.+|... .|...|++.|.+ |+.+.+.|+++++ |.|++|||.
T Consensus 403 Gh~F~vl~~~g~~~~n~~~P~~rDtv~v~~~g~~~~irf~adnP---G~W~~HCHi 455 (495)
T 3t6v_A 403 GHDFAVSESASNSTSNYDDPIWRDVVSIGGVGDNVTIRFCTDNP---GPWFLHCHI 455 (495)
T ss_dssp TCCEEEEECTTCCCCCSSSCCEESEEECCSTTCEEEEEEECCSC---EEEEEEESC
T ss_pred CCcEEEEecCCCCCcccCCCCCccEEEcCCCCcEEEEEEEcCCC---eeEEEEecc
Confidence 99999999988643 688999999997 9999999999998 999999995
No 60
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=99.63 E-value=2.7e-14 Score=155.20 Aligned_cols=223 Identities=13% Similarity=0.135 Sum_probs=151.1
Q ss_pred eeEEEECCCCCCcEEEEecCCEEEEEEEeCC-CCceeEEEeeeeeccCCCCCCCC----CccccccCCCCeEEEEEEEcC
Q 008090 52 RNIISVNGQFPGPSLVAREGDRVLIKVTNHV-SNNVTIHWHGVRQVTSGWADGPA----YVTQCPIQTGQSYTYNFTITG 126 (578)
Q Consensus 52 ~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~~DG~~----~~~q~~i~pG~~~~y~f~~~~ 126 (578)
...+++||+. .|+|.|++|+++|+||.|.. .....++++|......+ .||.+ .+....|.||||++..+++.+
T Consensus 167 ~d~~liNG~~-~~~~~v~~g~~~RlRliNa~~~~~~~~~i~gh~~~vi~-~DG~~~~P~~~~~l~l~~gqR~dvlv~~~~ 244 (534)
T 1zpu_A 167 PQNLIVNNTM-NLTWEVQPDTTYLLRIVNVGGFVSQYFWIEDHEMTVVE-IDGITTEKNVTDMLYITVAQRYTVLVHTKN 244 (534)
T ss_dssp CSEEEETTBS-SCEEECCSSCEEEEEEEECCSSCCEEEEETTBCEEEEE-ETTEEEEEEEESCEEECTTCEEEEEEECCS
T ss_pred CceEEECCCC-ceEEEEECCCEEEEEEEeccCCceEEEEEcCCeeEEEe-ccCcCccccEeceEEECccceEEEEEEcCC
Confidence 4688999996 59999999999999999998 45778899888776655 79964 234567899999999999743
Q ss_pred C-CCceeeecCcchhc-------ccceeeEEEeCCCCCCCCCC-------------------------CCCCcEeEEeee
Q 008090 127 Q-RGTLLWHAHISWLR-------STLYGPIIILPKRNESYPFQ-------------------------KPHKEIPILFGE 173 (578)
Q Consensus 127 ~-~Gt~wYH~H~~~~~-------~Gl~G~liV~~~~~~~~p~~-------------------------~~~~e~~l~~~d 173 (578)
+ .|.||......... ....+..|++-......+.+ ..++.+.+.++-
T Consensus 245 ~~~~~y~i~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~p~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~l~~~~ 324 (534)
T 1zpu_A 245 DTDKNFAIMQKFDDTMLDVIPSDLQLNATSYMVYNKTAALPTQNYVDSIDNFLDDFYLQPYEKEAIYGEPDHVITVDVVM 324 (534)
T ss_dssp CSSCCEEEEEEECGGGSSSCCTTCCCEEEEEEESCTTSCBCCCCCCSCSSCSCCGGGCCBSSCCCCCCSCSEEEEEEEEE
T ss_pred CCCCcEEEEEeccccccccCCCCCCcceEEEEEeCCCCCCCCCCcccccccccccccceeCCCCCCCCCCCeEEEEEEEe
Confidence 3 57899987654221 01122223322111111100 001111111100
Q ss_pred cccCChHHHHHHHHhcCCCCCCCceEEEcCccCCCccc--------------C----CCCeeEEEEeCCcEEEEEEEecC
Q 008090 174 WFNVDPEAIISQALQTGAGPNVSDAYTINGLPGPLYNC--------------S----SKDTYKLKVKPGKTYLLRLINAA 235 (578)
Q Consensus 174 ~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~--------------~----~~~~~~l~v~~G~~~rlRliN~~ 235 (578)
.. .......++|||+.+..... + ......+.++.|++++|.|.|.+
T Consensus 325 --------------~~--~~~~~~~~~iNg~s~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~ivi~N~~ 388 (534)
T 1zpu_A 325 --------------DN--LKNGVNYAFFNNITYTAPKVPTLMTVLSSGDQANNSEIYGSNTHTFILEKDEIVEIVLNNQD 388 (534)
T ss_dssp --------------EE--CTTSCEEEEETTBCCCCCSSCHHHHHTTSGGGTTCGGGGCSSSCEEEECTTCEEEEEEEECS
T ss_pred --------------ec--cCCceeEEEECCCcccCCCCCceeeecccCcccCCCcccCCCceEEEeCCCCEEEEEEeCCC
Confidence 00 00112468899997632100 0 00134689999999999999998
Q ss_pred CCCeEEEEEcCceEEEEeecCC-----------c---------ccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEe
Q 008090 236 LNDELFFSIANHTLTVVEADAV-----------Y---------VKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQAR 295 (578)
Q Consensus 236 ~~~~~~~~l~gh~~~via~DG~-----------~---------v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~ 295 (578)
...| .||||||.|+|++.++. + ..|...|++.|.||+.+.|.|+++++ |.|++|||
T Consensus 389 ~~~H-P~HLHGh~F~Vl~~~~~~~~~~~G~p~~~~~~~~~~~~~~p~~RDTv~V~pgg~v~IrF~aDNP---G~W~~HCH 464 (534)
T 1zpu_A 389 TGTH-PFHLHGHAFQTIQRDRTYDDALGEVPHSFDPDNHPAFPEYPMRRDTLYVRPQSNFVIRFKADNP---GVWFFHCH 464 (534)
T ss_dssp SSCE-EEEETTCCEEEEEECCCCCGGGTCCCCCCBTTBCCCCCSSCEEESEEEECTTCEEEEEEECCSC---EEEEEEEC
T ss_pred CCCC-CeEecCCceEEEeecCCccccccCcccccCccccccccCCCCeeeEEEeCCCCEEEEEEEeCCC---eeEEEEeC
Confidence 6555 59999999999998853 1 24788999999999999999999998 99999999
Q ss_pred e
Q 008090 296 P 296 (578)
Q Consensus 296 ~ 296 (578)
.
T Consensus 465 i 465 (534)
T 1zpu_A 465 I 465 (534)
T ss_dssp C
T ss_pred c
Confidence 5
No 61
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=99.62 E-value=3.3e-14 Score=152.79 Aligned_cols=239 Identities=14% Similarity=0.111 Sum_probs=150.9
Q ss_pred eeeEEEECCCC--------CCcEEEEecCCEEEEEEEeCC-CCceeEEEeeeeeccCCCCCCCC----CccccccCCCCe
Q 008090 51 TRNIISVNGQF--------PGPSLVAREGDRVLIKVTNHV-SNNVTIHWHGVRQVTSGWADGPA----YVTQCPIQTGQS 117 (578)
Q Consensus 51 ~~~~~~~Ng~~--------pgP~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~~DG~~----~~~q~~i~pG~~ 117 (578)
....+++||+- +-|.|+|++|+++|+||.|.. .....+|++|......+ .||.+ .+....|.||||
T Consensus 165 ~~d~~liNG~~~~~~~~~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~~via-~DG~~~~P~~~~~l~i~pGqR 243 (499)
T 3pxl_A 165 GADATLINGKGRAPSDSVAELSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIE-VDSVNSQPLEVDSIQIFAAQR 243 (499)
T ss_dssp SCSEEEETTBCCCTTCTTCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTBCEEEEE-ETTEEEEEEEESBEEECTTCE
T ss_pred CCcEEEECCCCcCCCCCCCCcceEEEcCCCEEEEEEEecCCCeeEEEEECCCeEEEEE-ECCcccCceEeeeEEECCCcE
Confidence 45689999973 347999999999999999987 46788999998876655 89964 234567999999
Q ss_pred EEEEEEEcCCCCceeeecCcchh---c-ccceeeEEEeCCCCCCCCCCCCCCcEeEEeeecccCCh------H-HH---H
Q 008090 118 YTYNFTITGQRGTLLWHAHISWL---R-STLYGPIIILPKRNESYPFQKPHKEIPILFGEWFNVDP------E-AI---I 183 (578)
Q Consensus 118 ~~y~f~~~~~~Gt~wYH~H~~~~---~-~Gl~G~liV~~~~~~~~p~~~~~~e~~l~~~d~~~~~~------~-~~---~ 183 (578)
++..+++.+.+|.||..+..... . .+..-+++.........|......... .+.+...... . .. .
T Consensus 244 ~dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~ail~Y~~~~~~~p~~~~~~~~~-~~~~~~L~p~~~~~~p~~~~~~~~ 322 (499)
T 3pxl_A 244 YSFVLDANQAVDNYWIRANPNFGNVGFDGGINSAILRYDGAPAVEPTTNQTTSVK-PLNEVDLHPLVSTPVPGAPSSGGV 322 (499)
T ss_dssp EEEEEECCSCSSEEEEEEEESSSSCSCGGGTTEEEEEETTSCSSCCCCCCCCCSS-BCCGGGCCBSSCCCCSSCSSTTCS
T ss_pred EEEEEECCCCCceEEEEEecccCccccCCCceEEEEEeCCCCCCCCCCCCCCCCc-ccccccccccccccCCCcccCCCC
Confidence 99999985557999988754211 1 222122332222111111100000000 0000000000 0 00 0
Q ss_pred HHHHhcCCCCCCCceEEEcCccCCCccc-------C--------CCCeeEEEEeCCcEEEEEEE---ecCCCCeEEEEEc
Q 008090 184 SQALQTGAGPNVSDAYTINGLPGPLYNC-------S--------SKDTYKLKVKPGKTYLLRLI---NAALNDELFFSIA 245 (578)
Q Consensus 184 ~~~~~~g~~~~~~~~~liNG~~~~~~~~-------~--------~~~~~~l~v~~G~~~rlRli---N~~~~~~~~~~l~ 245 (578)
+...... .......|+|||+.+..... + ......+.++.|++|+|.|. |.+... +.||||
T Consensus 323 d~~~~l~-~~~~~~~w~iNg~s~~~~~~P~L~~~~~g~~~~~~~~~~~~v~~~~~g~~V~ivl~~~~n~~~~~-HP~HLH 400 (499)
T 3pxl_A 323 DKAINMA-FNFNGSNFFINGASFVPPTVPVLLQILSGAQTAQDLLPSGSVYVLPSNASIEISFPATAAAPGAP-HPFHLH 400 (499)
T ss_dssp SEEEECC-EEECSSCEEETTBCCCCCSSCHHHHHHTTCCSTTTSSSTTSEEEECTTCEEEEEEECCTTSCSCS-CEEEET
T ss_pred cEEEEEE-EEecCcEEEEcCEecCCCCCchhhhhhcCCccccccCCCceeEEecCCCEEEEEEecCcccCCCC-ccceec
Confidence 0000000 00012368899987632100 0 01235689999999999999 444334 459999
Q ss_pred CceEEEEeecCCcc----cceEecEEEeCC---CceEEEEEEcCCCCCCCceEEEEee
Q 008090 246 NHTLTVVEADAVYV----KPFDTDKLLITP---GQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 246 gh~~~via~DG~~v----~P~~~d~v~l~p---geR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
||.|+|++.+|... .|...|++.|.+ |+.+.+.|+++++ |.|++|||.
T Consensus 401 Gh~F~Vl~~~g~~~~n~~~P~~rDtv~v~~~~pg~~~~irf~adnP---G~W~~HCHi 455 (499)
T 3pxl_A 401 GHTFAVVRSAGSTVYNYDNPIFRDVVSTGTPAAGDNVTIRFDTNNP---GPWFLHCHI 455 (499)
T ss_dssp TCCEEEEECTTCCCCCSSSCCEESEEECCCGGGTCEEEEEEECCSC---EEEEEEESS
T ss_pred CCcEEEEeccCCcccccCCCCccceEEcCCcCCCcEEEEEEEcCCC---ceEEEEeCC
Confidence 99999999888643 688999999986 9999999999998 999999995
No 62
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...
Probab=99.61 E-value=2.9e-14 Score=152.20 Aligned_cols=250 Identities=10% Similarity=0.101 Sum_probs=157.1
Q ss_pred EEEEEEEEEeeecCc--------------eeeeEEEECCCCCCcEEEEecCCEEEEEEEeCC-CCceeEEE-eeeeeccC
Q 008090 35 HYTFNIKYHNVTRLC--------------HTRNIISVNGQFPGPSLVAREGDRVLIKVTNHV-SNNVTIHW-HGVRQVTS 98 (578)
Q Consensus 35 ~~~l~~~~~~~~~~g--------------~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l-~~~~siH~-HG~~~~~~ 98 (578)
++.|.++.-....+| .....+++||+. .|.+.+ +|+++|+||.|.. .....+++ +|......
T Consensus 152 d~~lvl~D~~~~~~g~~~~~~~~~~~~~g~~gd~~lvNG~~-~p~~~v-~g~~~RlRliNas~~~~~~l~i~dg~~~~vI 229 (488)
T 3od3_A 152 DVPVIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAI-YPQHAA-PRGWLRLRLLNGCNARSLNFATSDNRPLYVI 229 (488)
T ss_dssp EEEEEEEEECBCTTSSBCCCCSHHHHHHCCCCSEEEETTBS-SCEEEE-EEEEEEEEEEECCSSCCEEEEETTCCCEEEE
T ss_pred ceeEEEEEeeecCCCceeccccccccccCCCCCEEEEcCCc-CccEec-CCCEEEEEEEccCCCceeeeeecCCCeEEEE
Confidence 566777654443333 334689999996 488876 6789999999997 46778888 67765554
Q ss_pred CCCCCCC-----CccccccCCCCeEEEEEEEcCCCCceeeecCcchhcccc--------eeeEEEeC-----CCCCCC--
Q 008090 99 GWADGPA-----YVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLRSTL--------YGPIIILP-----KRNESY-- 158 (578)
Q Consensus 99 ~~~DG~~-----~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~~Gl--------~G~liV~~-----~~~~~~-- 158 (578)
+ .||.+ .+....|.||||++..+++ .+.++|+.-...... .|+ .-.+-|.+ ....+.
T Consensus 230 a-~DG~~l~~P~~~~~l~l~pGeR~dvlv~~-~~~~~~~l~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~L 306 (488)
T 3od3_A 230 A-SDGGLLPEPVKVSELPVLMGERFEVLVEV-NDNKPFDLVTLPVSQ-MGMAIAPFDKPHPVMRIQPIAISASGALPDTL 306 (488)
T ss_dssp E-ETTEEEEEEEEESCEEECTTCEEEEEEEE-CTTCCEEEEECCCSS-TTTTSTTTTSCEEEEEEEEEEEECCCCCCSCC
T ss_pred E-eCCCcccCccEeceEEECCCCEEEEEEEe-CCCceEEEEEeccCC-CCcccccccCccceeEecccccCCCCCCCccc
Confidence 4 79943 2446779999999999998 566778776543211 111 01122221 111110
Q ss_pred ---C-CCC----CCCcEeEEeeecc-cCChHHHHHHHH---hcC-----------CCCC----------CCceEEEcCcc
Q 008090 159 ---P-FQK----PHKEIPILFGEWF-NVDPEAIISQAL---QTG-----------AGPN----------VSDAYTINGLP 205 (578)
Q Consensus 159 ---p-~~~----~~~e~~l~~~d~~-~~~~~~~~~~~~---~~g-----------~~~~----------~~~~~liNG~~ 205 (578)
+ .+. ..+++.+.+.... ......++.+.. ..+ .+.. ....|+|||+.
T Consensus 307 ~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ING~~ 386 (488)
T 3od3_A 307 SSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGNMNHMNHGGKFDFHHANKINGQA 386 (488)
T ss_dssp CCCCCCCCCTTCCEEEEEEEECHHHHHHHHHHHHHHHGGGGGTTSCHHHHCCCSCCCCCCCSCCCGGGCGGGCEEETTBC
T ss_pred ccCCCCcccccccceEEEEEecccccccccccccccccccccccccccccccccccCccccccccccccccceeeECCee
Confidence 1 010 1133344332100 000000000000 000 0000 01247999998
Q ss_pred CCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCccc---ceEecEEEeCCCceEEEEEEcC
Q 008090 206 GPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVK---PFDTDKLLITPGQTANVLLRTK 282 (578)
Q Consensus 206 ~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~---P~~~d~v~l~pgeR~dv~v~~~ 282 (578)
++. ..+.+.++.|+++||+|+|.+....+.||||||.|+|++.||.... +.+.|++.|. |++++|.|+++
T Consensus 387 ~~~------~~~~~~~~~G~~e~w~l~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~~kDTV~v~-g~~~~i~~~f~ 459 (488)
T 3od3_A 387 FDM------NKPMFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVKVE-GNVSEVLVKFN 459 (488)
T ss_dssp CCT------TCCSEECCBSSCEEEEEECTTCCCCEEEEETTCCBEEEEBTTBCCCGGGSSSBSEEEES-SSEEEEEECBC
T ss_pred CCC------CCCceEcCCCCEEEEEEEeCCCCCCccEEEcCceEEEeccCCCccccccCCceeEEEeC-CCEEEEEEEec
Confidence 742 3466899999999999999996556679999999999999998764 3578999999 99999999997
Q ss_pred CCC-CCCceEEEEee
Q 008090 283 PYF-PNATFFMQARP 296 (578)
Q Consensus 283 ~~~-~~g~y~l~~~~ 296 (578)
++. ..|.|++|||.
T Consensus 460 ~~~~~~G~~m~HCH~ 474 (488)
T 3od3_A 460 HDAPKEHAYMAHCHL 474 (488)
T ss_dssp SCCCGGGCEEEEESS
T ss_pred cCCCCCCCEEEeCCc
Confidence 642 12799999996
No 63
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=99.59 E-value=6.6e-14 Score=153.14 Aligned_cols=211 Identities=14% Similarity=0.118 Sum_probs=141.0
Q ss_pred EEEEecCCEEEEEEEeCC-CCceeEEEeeeeeccCCCCCCCC----CccccccCCCCeEEEEEEE-cCCCCceeeecCcc
Q 008090 65 SLVAREGDRVLIKVTNHV-SNNVTIHWHGVRQVTSGWADGPA----YVTQCPIQTGQSYTYNFTI-TGQRGTLLWHAHIS 138 (578)
Q Consensus 65 ~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~~DG~~----~~~q~~i~pG~~~~y~f~~-~~~~Gt~wYH~H~~ 138 (578)
+|+|++|+++|+||.|.. .....+|++|......+ .||.+ .+....|.||||++..+++ .+.+|.||.+++..
T Consensus 205 ~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~~vi~-~DG~~~~P~~~~~l~i~pgqR~dvlv~~~~~~~g~y~i~~~~~ 283 (552)
T 1aoz_A 205 IFHVSPKKTYRIRIASTTALAALNFAIGNHQLLVVE-ADGNYVQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTR 283 (552)
T ss_dssp CEEECTTCEEEEEEEECCSSCEEEEEETTCCEEEEE-ETTEEEEEEEESCEEECTTCEEEEEEECCSCTTCCEEEEEEEE
T ss_pred EEEEcCCCEEEEEEEcccccceEEEEEcCcEEEEEE-ECCcccCceEEeEEEEcCCcEEEEEEEcCCCCCCCEEEEEEcc
Confidence 899999999999999997 45678999998776654 89953 2345679999999999997 34589999998864
Q ss_pred hh---cccceeeEEEeCCCCCCCCC---CC-----------------------------CCCcEeEEeeecccCChHHHH
Q 008090 139 WL---RSTLYGPIIILPKRNESYPF---QK-----------------------------PHKEIPILFGEWFNVDPEAII 183 (578)
Q Consensus 139 ~~---~~Gl~G~liV~~~~~~~~p~---~~-----------------------------~~~e~~l~~~d~~~~~~~~~~ 183 (578)
.. .....+.|-.........+. +. .++.+.+.++.
T Consensus 284 ~~~~~~~~~~ail~y~~~~~~~~p~~~~p~~p~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~---------- 353 (552)
T 1aoz_A 284 ARHPNTPPGLTLLNYLPNSVSKLPTSPPPQTPAWDDFDRSKNFTYRITAAMGSPKPPVKFNRRIFLLNTQ---------- 353 (552)
T ss_dssp SSCCCSCCEEEEEEETTSCTTSCCSSCCCCCCCTTCHHHHHHHHTTCCBCTTCCCCCSSCSEEEEEEEEE----------
T ss_pred cCCCCCccEEEEEEECCCCCCCCCCCCCCCCCccccccccccccccccccCCCCCCCCCCcEEEEEEEee----------
Confidence 31 11122333333222100000 00 00111111100
Q ss_pred HHHHhcCCCCCCCceEEEcCccCCCc-----------------------------ccCC--------CCeeEEEEeCCcE
Q 008090 184 SQALQTGAGPNVSDAYTINGLPGPLY-----------------------------NCSS--------KDTYKLKVKPGKT 226 (578)
Q Consensus 184 ~~~~~~g~~~~~~~~~liNG~~~~~~-----------------------------~~~~--------~~~~~l~v~~G~~ 226 (578)
+ .......|.|||+.+..- +... .....+.++.|++
T Consensus 354 ------~-~~~~~~~w~iNg~s~~~p~~P~L~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~g~~ 426 (552)
T 1aoz_A 354 ------N-VINGYVKWAINDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFPEDYDIDTPPTNEKTRIGNGVYQFKIGEV 426 (552)
T ss_dssp ------E-EETTEEEEEETTEEECCCSSCHHHHHHTTCTTSSCCSCCCSCCCTTCCTTSCCCCTTCEEECCCEEECTTCE
T ss_pred ------c-cCCCeEEEEECCCccCCCCCCHHHHHhhcCccccccCCCccccccccccccccccccccccceEEEecCCCE
Confidence 0 000012478888764210 0000 0113478999999
Q ss_pred EEEEEEecCCC-----CeEEEEEcCceEEEEeec-CCc----------ccceEecEEEeCCCceEEEEEEcCCCCCCCce
Q 008090 227 YLLRLINAALN-----DELFFSIANHTLTVVEAD-AVY----------VKPFDTDKLLITPGQTANVLLRTKPYFPNATF 290 (578)
Q Consensus 227 ~rlRliN~~~~-----~~~~~~l~gh~~~via~D-G~~----------v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y 290 (578)
++|.|.|.+.. ..+.||||||.|+|++.. |.+ ..|...|++.|.||+.+.|.|+++++ |.|
T Consensus 427 v~ivi~N~~~~~~~~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~n~~~p~~RDTv~vpp~g~v~Irf~aDNP---G~W 503 (552)
T 1aoz_A 427 VDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFSAEEESSLNLKNPPLRNTVVIFPYGWTAIRFVADNP---GVW 503 (552)
T ss_dssp EEEEEEECCCSSTTCCCCEEEEETTCCEEEEEEEESSCCGGGGGGSCCSSCCEESEEEECTTEEEEEEEECCSC---EEE
T ss_pred EEEEEeCCcccccccCCCCCEEEcCCceEEEecccCccCcccccccccCCCCccCeEEeCCCceEEEEEEcCCC---eEE
Confidence 99999998743 346699999999999984 653 25788999999999999999999998 999
Q ss_pred EEEEee
Q 008090 291 FMQARP 296 (578)
Q Consensus 291 ~l~~~~ 296 (578)
++|||.
T Consensus 504 ~~HCHi 509 (552)
T 1aoz_A 504 AFHCHI 509 (552)
T ss_dssp EEEESS
T ss_pred EEEeee
Confidence 999995
No 64
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase, multicopper oxidase, hexamer; 2.30A {Streptomyces antibioticus} PDB: 3gyr_A
Probab=99.58 E-value=1e-13 Score=151.86 Aligned_cols=231 Identities=13% Similarity=0.109 Sum_probs=146.2
Q ss_pred eeeEEEECCCCCCcEEEEecCCEEEEEEEeCC-CCceeEEEeee-------eeccCCCCCCCCC-----cc------ccc
Q 008090 51 TRNIISVNGQFPGPSLVAREGDRVLIKVTNHV-SNNVTIHWHGV-------RQVTSGWADGPAY-----VT------QCP 111 (578)
Q Consensus 51 ~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~-------~~~~~~~~DG~~~-----~~------q~~ 111 (578)
....+++||+. .|.+.|++| ++|+||.|.. .+...+++.|. .....+ .||.+- +. ...
T Consensus 253 ~gd~~lVNG~~-~p~~~V~~g-~yRlRliNas~~r~~~l~i~~h~g~~~~~~~~vIa-~DG~~l~~P~~~~~~~~~~~l~ 329 (612)
T 2g23_A 253 FGPYTTVNGRI-WPYADVDDG-WYRLRLVNASNARIYNLVLIDEDDRPVPGVVHQIG-SDGGLLPRPVPVDFDDTLPVLS 329 (612)
T ss_dssp CCSEEEETTEE-SCEEEEESS-EEEEEEEECCSSCCEEEEEECTTSCBCTTSEEEEE-ETTEEEEEEEEECSSSSSSSEE
T ss_pred cCCEEEECCcc-CCeEEecCC-eEEEEEEecCCCeEEEEEEcCCCCccCCCcEEEEE-eCCeEccCCEEecccCcccEEE
Confidence 34678999995 599999999 9999999998 56788888775 233333 799531 23 567
Q ss_pred cCCCCeEEEEEEEcCCCCc-eeeecCcchhcc-----------cceeeEEEeCCC-CC--CCCCC--C------CC---C
Q 008090 112 IQTGQSYTYNFTITGQRGT-LLWHAHISWLRS-----------TLYGPIIILPKR-NE--SYPFQ--K------PH---K 165 (578)
Q Consensus 112 i~pG~~~~y~f~~~~~~Gt-~wYH~H~~~~~~-----------Gl~G~liV~~~~-~~--~~p~~--~------~~---~ 165 (578)
|.||||++.-+++.+.+|+ ++.......... +..--|.|.... .. ..|.. . .+ .
T Consensus 330 l~pgeR~dvlVd~~~~~g~~~~L~~~~~~~~~g~~~~~~~~~~~~vm~f~V~~~~~~~~~~~P~~L~~~~~~l~~~~~~~ 409 (612)
T 2g23_A 330 AAPAERFDLLVDFRALGGRRLRLVDKGPGAPAGTPDPLGGVRYPEVMEFRVRETCEEDSFALPEVLSGSFRRMSHDIPHG 409 (612)
T ss_dssp ECTTCEEEEEEECTTCTTCEEEEEECCTTSCTTSCBGGGTBSCCEEEEEEEECCSCCCCCCCCSSCCSSCCCCCTTSCCE
T ss_pred ECCcCeEEEEEECCCCCCCEEEEEeCCccCCCCccccccCccccceEEEEEccCCCCCCCCCChhhccccccCCcccccc
Confidence 8999999999997555674 665544321111 112224554332 11 11110 0 00 0
Q ss_pred cEeEEee------------ecccCChHHHHHHHHh---cC-----CCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCc
Q 008090 166 EIPILFG------------EWFNVDPEAIISQALQ---TG-----AGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGK 225 (578)
Q Consensus 166 e~~l~~~------------d~~~~~~~~~~~~~~~---~g-----~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~ 225 (578)
...+++. -|....... .+... .+ ........++|||+.+. ..+.+.++.|+
T Consensus 410 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~iNG~~~~-------~~~~~~v~~G~ 480 (612)
T 2g23_A 410 HRLIVLTPPGTKGSGGHPEIWEMAEVED--PADVQVPAEGVIQVTGADGRTKTYRRTAATFN-------DGLGFTIGEGT 480 (612)
T ss_dssp EEEEEECCTTCTTSTTCCCEEEEEEEC-------CCSCTTEEEEECTTSCEEEEEEEECSTT-------SCCCEEEETTC
T ss_pred eeEEeeccccccccccccceeecccccc--ccccccccccceeeeccCCceeEEEECCccCC-------CCCceEecCCC
Confidence 1112221 010000000 00000 00 00011246899999763 45779999999
Q ss_pred EEEEEEEecCCCCeEEEEEcCceEEEEeecCC------------------------cc---cceEecEEEeCCCceEEEE
Q 008090 226 TYLLRLINAALNDELFFSIANHTLTVVEADAV------------------------YV---KPFDTDKLLITPGQTANVL 278 (578)
Q Consensus 226 ~~rlRliN~~~~~~~~~~l~gh~~~via~DG~------------------------~v---~P~~~d~v~l~pgeR~dv~ 278 (578)
+++|+|+|.+.. .+.||||||.|+|++.+|. .. ++.+.|++.|.||+++.|.
T Consensus 481 ~v~w~l~N~~~~-~HPiHlHg~~F~Vl~r~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~e~~~kDTv~v~Pg~~~~i~ 559 (612)
T 2g23_A 481 HEQWTFLNLSPI-LHPMHIHLADFQVLGRDAYDASGFDLALGGTRTPVRLDPDTPVPLAPNELGHKDVFQVPGPQGLRVM 559 (612)
T ss_dssp EEEEEEEECSSS-CEEEEESSCCEEEEEEEEEECTTEETTTTEESSCEEEEEEEECCCCTTSSSCBSEEEECSSEEEEEE
T ss_pred EEEEEEEeCCCC-CCCeEEcCceEEEecccCcccccccccccCcccccccccccccCCCcccccccCeEEECCCcEEEEE
Confidence 999999999855 4559999999999987531 11 2347899999999999999
Q ss_pred EEcC-CCCCCCceEEEEeec
Q 008090 279 LRTK-PYFPNATFFMQARPY 297 (578)
Q Consensus 279 v~~~-~~~~~g~y~l~~~~~ 297 (578)
++++ ++ |.|++|||..
T Consensus 560 ~~~~~~p---G~w~~HCHil 576 (612)
T 2g23_A 560 GKFDGAY---GRFMYHCHLL 576 (612)
T ss_dssp EECCSCC---EEEEEEESSH
T ss_pred EEeCCCC---ccEEEEeCch
Confidence 9999 66 9999999963
No 65
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=99.57 E-value=2.8e-13 Score=148.04 Aligned_cols=240 Identities=10% Similarity=0.053 Sum_probs=147.2
Q ss_pred eeEEEECCCCC--------CcEEEEecCCEEEEEEEeCC-CCceeEEEeeeeeccCCCCCCCC----CccccccCCCCeE
Q 008090 52 RNIISVNGQFP--------GPSLVAREGDRVLIKVTNHV-SNNVTIHWHGVRQVTSGWADGPA----YVTQCPIQTGQSY 118 (578)
Q Consensus 52 ~~~~~~Ng~~p--------gP~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~~DG~~----~~~q~~i~pG~~~ 118 (578)
...+++||+.. -|+|.|++|+++|+||.|.. .....+|++|......+ .||.+ .+....|.||||+
T Consensus 195 ~d~~liNG~~~~~~~~~g~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~gh~~~vi~-~DG~~~~p~~~~~l~l~pgeR~ 273 (559)
T 2q9o_A 195 SDNVLINGTAVNPNTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIA-ADMVPVNAMTVDSLFLAVGQRY 273 (559)
T ss_dssp BSEEEETTBCBCTTTCCBCCCEEEECTTCEEEEEEEECCSSCCEEEEETTBCEEEEE-ETTEEEEEEEESCEEECTTCEE
T ss_pred cceeEECCccccCcCCCCCceEEEEcCCCEEEEEEEecCCCceEEEEECCCceEEEe-cCCcccCceEeCeEEEccEEEE
Confidence 45789999973 36999999999999999998 45678999998776654 79965 2345679999999
Q ss_pred EEEEEEcCCCCceeeecCc--chh---c-cc-ceeeEEEeCCCCCCCCCCC----CC----CcE-eEEeeecccCChH--
Q 008090 119 TYNFTITGQRGTLLWHAHI--SWL---R-ST-LYGPIIILPKRNESYPFQK----PH----KEI-PILFGEWFNVDPE-- 180 (578)
Q Consensus 119 ~y~f~~~~~~Gt~wYH~H~--~~~---~-~G-l~G~liV~~~~~~~~p~~~----~~----~e~-~l~~~d~~~~~~~-- 180 (578)
+..+++.+.+|.||..... ... . .. ..+.|....... ..|... .+ .+. ..-+.........
T Consensus 274 dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~~~ail~y~~~~~-~~P~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~ 352 (559)
T 2q9o_A 274 DVVIDASRAPDNYWFNVTFGGQAACGGSLNPHPAAIFHYAGAPG-GLPTDEGTPPVDHQCLDTLDVRPVVPRSVPVNSFV 352 (559)
T ss_dssp EEEEECCSCSSEEEEEEECCGGGTTCCBSSSCCEEEEEETTSCC-SCCCCCCCCCCCCTTCCCSCCCBSSCCBCCCTTCC
T ss_pred EEEEECCCCCCcEEEEEEeccccccCCCCCCceeEEEEECCCCC-CCCCCCCCcCCCcccccccccccCCCCCCCCcccc
Confidence 9999985567999988765 211 1 11 123333332211 111000 00 000 0000000000000
Q ss_pred H-HHHHH-HhcCCCCCCCceEEEcCccCCCcccC--------C-----CCeeEEEEeCCcEEEEEEEecCC----CCeEE
Q 008090 181 A-IISQA-LQTGAGPNVSDAYTINGLPGPLYNCS--------S-----KDTYKLKVKPGKTYLLRLINAAL----NDELF 241 (578)
Q Consensus 181 ~-~~~~~-~~~g~~~~~~~~~liNG~~~~~~~~~--------~-----~~~~~l~v~~G~~~rlRliN~~~----~~~~~ 241 (578)
. ..... ............++|||+.+...... + .....+.++.++.+++.++|... ...+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~iNg~s~~~~~~~P~L~~~~~g~~~~~~~~~~~~~~~~~~v~~~vi~n~~~~~~~~~HP 432 (559)
T 2q9o_A 353 KRPDNTLPVALDLTGTPLFVWKVNGSDINVDWGKPIIDYILTGNTSYPVSDNIVQVDAVDQWTYWLIENDPEGPFSLPHP 432 (559)
T ss_dssp CCGGGEEEEEEECSSSSSCEEEETTBCCCCCTTSCHHHHHHHTCCCCCGGGCEEEECCSSCEEEEEEEECTTSSCCCCEE
T ss_pred cceeEEEEEEeecCCCceEEEEECCEecccCCCCCcHhHhhcCCccCCCCceEEEcCCCCEEEEEEEeCCCccccCCCCc
Confidence 0 00000 00000011224689999986321000 0 01234777776666665555533 34566
Q ss_pred EEEcCceEEEEeecC---------Cc------------ccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEee
Q 008090 242 FSIANHTLTVVEADA---------VY------------VKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 242 ~~l~gh~~~via~DG---------~~------------v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
||||||.|+|++.++ .. ..|...|++.|.+++++.|.|+++++ |.|++|||.
T Consensus 433 ~HLHGh~F~Vl~~g~~~~~~~~~~g~~~~~~~~~~~n~~~p~~RDTV~Vp~~g~v~IrF~adNP---G~W~~HCHi 505 (559)
T 2q9o_A 433 MHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLAFRTDNP---GAWLFHCHI 505 (559)
T ss_dssp EEESSSCEEEEEESCCCCTTSCCCCCCCHHHHGGGCCCBSCCEESEEEECTTSEEEEEEECCSC---EEEEEEECC
T ss_pred EEECCCceEEEecccccccccccccccCccccccccccCCCCccceEEccCCccEEEEEEcCCC---eeEEEEecc
Confidence 999999999999986 21 14678999999999999999999998 999999995
No 66
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=99.57 E-value=6e-14 Score=149.27 Aligned_cols=212 Identities=14% Similarity=0.099 Sum_probs=143.5
Q ss_pred eeeeEEEECCCCCCcEEEEecCCEEEEEEEeCC-CCceeEEE--ee---eeeccCCCCCCCCC-----ccccccCCCCeE
Q 008090 50 HTRNIISVNGQFPGPSLVAREGDRVLIKVTNHV-SNNVTIHW--HG---VRQVTSGWADGPAY-----VTQCPIQTGQSY 118 (578)
Q Consensus 50 ~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l-~~~~siH~--HG---~~~~~~~~~DG~~~-----~~q~~i~pG~~~ 118 (578)
.....+++||+. .|+|+|++| ++|+||.|.. .....+|+ +| ......+ .||.+- +....|.||||+
T Consensus 167 ~~~~~~liNG~~-~p~~~v~~g-~~RlRliNa~~~~~~~~~i~~~~~~~~~~~via-~DG~~~~~P~~~~~l~l~pgeR~ 243 (448)
T 3aw5_A 167 FLGNAVLVNGVK-DAVFKLSGG-SYRLRLVNGSNARLYMLSIVKKNGDVVPMRLIA-VDQGFLARPIEVRALFLAPAERA 243 (448)
T ss_dssp CCCSEEEETTEE-TCEEEEEEE-EEEEEEEECSSSCCEEEEEEETTSCEECEEEEE-ETTEEEEEEEEESCEEECTTCEE
T ss_pred ccccEEEECCcc-cceEEECCC-eEEEEEEcCCCcceEEEEEEcCCCCCccEEEEE-eCCCccCCceEeceEEECCcceE
Confidence 345689999996 599999999 9999999998 46788999 77 5544443 799541 345678999999
Q ss_pred EEEEEEcCCCCceeeecCcchhccc--------------ceee--EEEeCCCCCCCC--C---C----CCCCcEeEEeee
Q 008090 119 TYNFTITGQRGTLLWHAHISWLRST--------------LYGP--IIILPKRNESYP--F---Q----KPHKEIPILFGE 173 (578)
Q Consensus 119 ~y~f~~~~~~Gt~wYH~H~~~~~~G--------------l~G~--liV~~~~~~~~p--~---~----~~~~e~~l~~~d 173 (578)
+..++++ .+.||..++......| .... |.+......+.| + + ....+..+.+..
T Consensus 244 dvlv~~~--~~~y~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~lp~~~~~~~~~~~~~l~~ 321 (448)
T 3aw5_A 244 EVVVELG--EGVYLLKNTPFDPMHLEMGHGMQEALPEGSEYTIATFLVEGKGEAVPVEALSDPPPEPPKPTRTRRFALSL 321 (448)
T ss_dssp EEEEEEC--SEEEEEEECCCCCCCCTTSSCCCCSSCTTSCEEEEEEEEEEECCCCCCCCCSCCCCCCCCCSEEEEEEEEE
T ss_pred EEEEECC--CCceEEEccccccccCccccccccccCCCCCceEEEEEEcCCCCCCCccccCCCCCCCCCCCceEEEEEeC
Confidence 9999973 4788988764321100 1111 222111110000 0 0 011112222210
Q ss_pred cccCChHHHHHHHHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEE-EeCCcEEEEEEEecCCCCeEEEEEcCceEEEE
Q 008090 174 WFNVDPEAIISQALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLK-VKPGKTYLLRLINAALNDELFFSIANHTLTVV 252 (578)
Q Consensus 174 ~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~-v~~G~~~rlRliN~~~~~~~~~~l~gh~~~vi 252 (578)
+ ...|+|||+.+.. ..+.+. ++.|++++|+|.|.+....+.||||||.|+|+
T Consensus 322 ----------------~-----~~~~~iNg~~~~~------~~p~~~~~~~g~~v~~~i~N~~~~~~HP~HLHG~~F~Vl 374 (448)
T 3aw5_A 322 ----------------S-----GMQWTINGMFWNA------SNPLFEHVSVEGVELWEIVNDKASMPHPMHLHGFPMWII 374 (448)
T ss_dssp ----------------E-----TTEEEETTBCCCT------TCTTCCCEEECEEEEEEEEECSSSCCEEEEESSSCBEEE
T ss_pred ----------------C-----CceeeECCCcCCC------CCCceeccCCCCeEEEEEEcCCCCCCcCEEECCceEEEE
Confidence 0 1248999998742 234456 89999999999999833445599999999999
Q ss_pred eecCCcc---------------cceEecEEEeCCCceEEEEEEcC---CCCCCCceEEEEee
Q 008090 253 EADAVYV---------------KPFDTDKLLITPGQTANVLLRTK---PYFPNATFFMQARP 296 (578)
Q Consensus 253 a~DG~~v---------------~P~~~d~v~l~pgeR~dv~v~~~---~~~~~g~y~l~~~~ 296 (578)
+.+|... +|.+.|++.+.||+++.|.+++. .. ..|++|||.
T Consensus 375 ~~~G~~~~~~~~~~~~~~~~p~~~~~rDTv~v~pg~~~~i~vrF~~~~ad---npw~~HCHi 433 (448)
T 3aw5_A 375 ERKDSPRQVAELAVDNRGRLPTDLGLKDTVLIWPGETVKIVVNFDAKKRG---QLFPFHCHN 433 (448)
T ss_dssp EEESCCHHHHTTCCSTTCCCGGGGSCBSEEEECTTCEEEEEEEECGGGTT---CEEEEEESS
T ss_pred EecCCCcccccccccccCCCccccCCccEEEeCCCCEEEEEEEecccCCC---CcEEEEcCC
Confidence 9999764 23589999999999999997776 44 229999995
No 67
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A*
Probab=99.50 E-value=3.8e-13 Score=145.96 Aligned_cols=214 Identities=15% Similarity=0.117 Sum_probs=139.8
Q ss_pred eeEEEECCCCCCcEEEEecCCEEEEEEEeCC-CCceeEEEee-------eeeccCCCCCCCC-----CccccccCCCCeE
Q 008090 52 RNIISVNGQFPGPSLVAREGDRVLIKVTNHV-SNNVTIHWHG-------VRQVTSGWADGPA-----YVTQCPIQTGQSY 118 (578)
Q Consensus 52 ~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l-~~~~siH~HG-------~~~~~~~~~DG~~-----~~~q~~i~pG~~~ 118 (578)
...+++||+. .|.|.|+.| ++|+||.|.. .....++++| ......+ .||.. .+....|.||||+
T Consensus 201 gd~~lvNG~~-~p~~~v~~~-~~RlRliNa~~~~~~~l~i~~~~~~~~~h~~~vIa-~DG~~~~~P~~~~~l~l~pgeR~ 277 (534)
T 3abg_A 201 GDVIHVNGQP-WPFKNVEPR-KYRFRFLDAAVSRSFGLYFADTDAIDTRLPFKVIA-SDSGLLEHPADTSLLYISMAERY 277 (534)
T ss_dssp CSEEEETTEE-SCBCBCCSS-EEEEEEEECCSSCCEEEEECCSSSTTCCCCEEEEE-ETTEEEEEEEEESCEEECTTCEE
T ss_pred CceeccCCcc-CceEEecCc-EEEEEEEecCCcceEEEEEecccCcCCCccEEEEE-eCCCcccCceEeceEEECCccEE
Confidence 5689999995 699999985 9999999998 4567899976 3333333 79852 2456779999999
Q ss_pred EEEEEEcCCCC-ceeeecCcchhc--------ccceeeEEEeCCCCC------CCCCC--C-------CCCcEeEEeeec
Q 008090 119 TYNFTITGQRG-TLLWHAHISWLR--------STLYGPIIILPKRNE------SYPFQ--K-------PHKEIPILFGEW 174 (578)
Q Consensus 119 ~y~f~~~~~~G-t~wYH~H~~~~~--------~Gl~G~liV~~~~~~------~~p~~--~-------~~~e~~l~~~d~ 174 (578)
+.-+++.+.+| +||......... ....+.+-....... ..|.. . ...+..+.+
T Consensus 278 dvlv~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~P~~L~~~~~p~~~~~~~~~~~~--- 354 (534)
T 3abg_A 278 EVVFDFSDYAGKTIELRNLGGSIGGIGTDTDYDNTDKVMRFVVADDTTQPDTSVVPANLRDVPFPSPTTNTPRQFRF--- 354 (534)
T ss_dssp EEEEECSSCTTSEEEEECCCCSSSSCCSCSSSTTTSEEEEEECCCCSSCSCCCCCCCCCCCCSCCCCCCCCCEEEEC---
T ss_pred EEEEEcCCCCCceEEEEeccccccccccccCcCCcceeEEEecCCCCcCCCCCCCccccccCCCCCCccccceEEEE---
Confidence 99999755477 587765321100 011122222211110 00000 0 000000000
Q ss_pred ccCChHHHHHHHHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEee
Q 008090 175 FNVDPEAIISQALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEA 254 (578)
Q Consensus 175 ~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~ 254 (578)
+. ....|+|||+.+... .....+.++.|++++|.|.|.+....+.||||||.|+|++.
T Consensus 355 ---------------~~---~~~~w~iNG~~f~~~----~~p~l~~v~~G~~~~w~i~N~~~~~~HP~HLHG~~F~Vl~~ 412 (534)
T 3abg_A 355 ---------------GR---TGPTWTINGVAFADV----QNRLLANVPVGTVERWELINAGNGWTHPIHIHLVDFKVISR 412 (534)
T ss_dssp ---------------SC---CCSTTCCCCBTTBCT----TSCCCCEECTTCEEEEEEEECSSSCCCCEEESSCCEEEEEE
T ss_pred ---------------ec---cCceeEECCcccCCC----CCcceeeccCCCEEEEEEEcCCCCCCcCEEECCeeEEEEEE
Confidence 00 113478999986311 11234689999999999999986545559999999999998
Q ss_pred -cCC---cc---cceEecEEEeCCCceEEEEEE-cCCCCCCCceEEEEee
Q 008090 255 -DAV---YV---KPFDTDKLLITPGQTANVLLR-TKPYFPNATFFMQARP 296 (578)
Q Consensus 255 -DG~---~v---~P~~~d~v~l~pgeR~dv~v~-~~~~~~~g~y~l~~~~ 296 (578)
+|. .. +..+.|++.|.||+++.|.+. ++++ |.|++|||.
T Consensus 413 ~~g~~~~~~~~~~~~~rDTV~v~pg~~v~I~~~~adnp---G~w~~HCHi 459 (534)
T 3abg_A 413 TSGNNARTVMPYESGLKDVVWLGRRETVVVEAHYAPFP---GVYMFHCHN 459 (534)
T ss_dssp SSCCSSSCCCSGGGSCBSEECCCSSEEEEEEEECCSCC---EEEEEEESC
T ss_pred cCCCCcCcCCccccCCcCeEEcCCCCEEEEEEEECCCC---ccEEEecCh
Confidence 663 11 125689999999999999998 6777 999999996
No 68
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=99.49 E-value=8e-15 Score=124.01 Aligned_cols=90 Identities=20% Similarity=0.190 Sum_probs=70.0
Q ss_pred CCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccC--CCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecC
Q 008090 59 GQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTS--GWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAH 136 (578)
Q Consensus 59 g~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~--~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H 136 (578)
-+|++|+|+|++||+|+ ++|.+..++++||||...+.. ...||.+ .++..|.||++++|+|+++.++|+||||||
T Consensus 14 ~~f~p~~i~v~~Gd~V~--~~N~~~~~H~v~~~~~~~~~~~g~~~~~~~-~~~~~i~pG~~~~~~f~~~~~~G~y~y~C~ 90 (105)
T 3cvb_A 14 FQFEPANVTVHPGDTVK--WVNNKLPPHNILFDDKQVPGASKELADKLS-HSQLMFSPGESYEITFSSDFPAGTYTYYCA 90 (105)
T ss_dssp SCEESSEEEECTTEEEE--EEECSSCCEEEEECTTSSGGGCHHHHHHHC-EEEEECSTTCEEEEEECTTSCSEEEEEECT
T ss_pred cEEeCCEEEEcCCCEEE--EEECCCCCCeEEEeCCCCCccccccccccc-ccccccCCCCeEEEEEecCCCCeeEEEEeC
Confidence 36678999999999975 679988999999999875431 0123322 345789999999999986468999999999
Q ss_pred cchhcccceeeEEEeC
Q 008090 137 ISWLRSTLYGPIIILP 152 (578)
Q Consensus 137 ~~~~~~Gl~G~liV~~ 152 (578)
.+ ..+||.|.|+|++
T Consensus 91 ~H-~~~GM~G~i~V~~ 105 (105)
T 3cvb_A 91 PH-RGAGMVGKITVEG 105 (105)
T ss_dssp TT-GGGTCEEEEEECC
T ss_pred Cc-hhcCCEEEEEEcC
Confidence 32 3479999999974
No 69
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A
Probab=99.49 E-value=7.4e-14 Score=151.30 Aligned_cols=216 Identities=12% Similarity=0.095 Sum_probs=139.7
Q ss_pred eeeEEEECCCCCCcEEEEecCCEEEEEEEeCCC-CceeEEEeee-eeccCCCCCCCC----C-ccccccCCCCeEEEEEE
Q 008090 51 TRNIISVNGQFPGPSLVAREGDRVLIKVTNHVS-NNVTIHWHGV-RQVTSGWADGPA----Y-VTQCPIQTGQSYTYNFT 123 (578)
Q Consensus 51 ~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~siH~HG~-~~~~~~~~DG~~----~-~~q~~i~pG~~~~y~f~ 123 (578)
....+++||+. .|.|.|+.| ++|+||.|... ....+|+.|. .....+ .||.+ . +....|.||||++..++
T Consensus 229 ~~d~~liNG~~-~p~~~v~~~-~~RlRliNa~~~~~~~~~i~~~~~~~via-~DG~~~~~P~~~~~l~l~pgeR~dvlv~ 305 (513)
T 2wsd_A 229 CGETILVNGKV-WPYLEVEPR-KYRFRVINASNTRTYNLSLDNGGDFIQIG-SDGGLLPRSVKLNSFSLAPAERYDIIID 305 (513)
T ss_dssp CCSEEEETTEE-SCEEECCSS-EEEEEEEECCSSCCEEEEETTCCCEEEEE-ETTEEEEEEEEESEEEECTTCEEEEEEE
T ss_pred ccceEEECCcc-cceEEecCC-EEEEEEEccCCcceEEEEECCCCeEEEEc-cCCCcccCceEeCeEEECCeeeEEEEEE
Confidence 34689999996 599999885 99999999984 5678999887 554443 79943 1 35577999999999999
Q ss_pred EcCCCCceee-ecCcc--hhc-ccc-eeeEEEeCCC--C----CCCC--CCC--------CCCcEeEEeeecccCChHHH
Q 008090 124 ITGQRGTLLW-HAHIS--WLR-STL-YGPIIILPKR--N----ESYP--FQK--------PHKEIPILFGEWFNVDPEAI 182 (578)
Q Consensus 124 ~~~~~Gt~wY-H~H~~--~~~-~Gl-~G~liV~~~~--~----~~~p--~~~--------~~~e~~l~~~d~~~~~~~~~ 182 (578)
+.+.+|.++. ..-.. ... ... ...+-.+... . ...| +.. ...+..+.+...
T Consensus 306 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~l~~~-------- 377 (513)
T 2wsd_A 306 FTAYEGESIILANSAGCGGDVNPETDANIMQFRVTKPLAQKDESRKPKYLASYPSVQHERIQNIRTLKLAGT-------- 377 (513)
T ss_dssp CGGGTTCEEEEEECCCSSSSCCTTTTTEEEEEECCSCCSSCCCCCCCSBCSCCGGGCCCCEEEEEEEEEEEE--------
T ss_pred CCCCCCcEEEEEecccccccCCCCCCcceEEEEeccCcccCccCCCCccccCCCCcccCCCcceEEEEEEee--------
Confidence 7554687332 11110 000 001 1222222111 0 0011 000 000111111110
Q ss_pred HHHHHhcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCC-----
Q 008090 183 ISQALQTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAV----- 257 (578)
Q Consensus 183 ~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~----- 257 (578)
........++|||+.+. ....+.++.|++++|+|+|.+... +.||||||.|+|++.+|.
T Consensus 378 --------~~~~g~~~~~iNg~~~~-------~~~~~~~~~g~~~~w~l~N~~~~~-HP~HlHG~~F~Vl~~~~~~~~~~ 441 (513)
T 2wsd_A 378 --------QDEYGRPVLLLNNKRWH-------DPVTETPKVGTTEIWSIINPTRGT-HPIHLHLVSFRVLDRRPFDIARY 441 (513)
T ss_dssp --------ECTTSCEEEEETTBCTT-------SCCCBCCBTTCEEEEEEEECSSSC-EEEEESSCCEEEEEEEEBCHHHH
T ss_pred --------cCCCCCceEeECCccCC-------CcccEecCCCCEEEEEEEcCCCCC-cCEeEeCceEEEEEecCcccccc
Confidence 00001135789999863 234568999999999999998654 459999999999998761
Q ss_pred ----------c-c-----cceEecEEEeCCCceEEEEEEcC-CCCCCCceEEEEee
Q 008090 258 ----------Y-V-----KPFDTDKLLITPGQTANVLLRTK-PYFPNATFFMQARP 296 (578)
Q Consensus 258 ----------~-v-----~P~~~d~v~l~pgeR~dv~v~~~-~~~~~g~y~l~~~~ 296 (578)
. . ++.+.|++.|.||+++.|.++++ ++ |.|++|||.
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~rDTv~v~pg~~~~i~~~f~dnp---G~w~~HCHi 494 (513)
T 2wsd_A 442 QESGELSYTGPAVPPPPSEKGWKDTIQAHAGEVLRIAATFGPYS---GRYVWHCHA 494 (513)
T ss_dssp HHHCCCCBSSCCBCCCGGGSSCBSEEEECTTEEEEEEEECCSCC---EEEEEEESC
T ss_pred cccccccccCCCCCCCccccCcccEEEeCCCCEEEEEEEecCCC---CCEEEEcCC
Confidence 0 0 23589999999999999999994 55 999999996
No 70
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=99.44 E-value=3.7e-13 Score=115.14 Aligned_cols=105 Identities=21% Similarity=0.190 Sum_probs=81.7
Q ss_pred EEEEEEEEEEeee-----cCceeeeE-EEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCc
Q 008090 34 RHYTFNIKYHNVT-----RLCHTRNI-ISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYV 107 (578)
Q Consensus 34 ~~~~l~~~~~~~~-----~~g~~~~~-~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~ 107 (578)
+.|.+.+.+.... .+|..... .+||++++++.|+|++||+|+++++|.+.. +||+.... .|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~f~p~~i~v~~G~~V~~~~~n~d~~-----~H~~~i~~----~~~--- 69 (112)
T 1iby_A 2 HNFNVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPETLVVKKGDAVKVVVENKSPI-----SEGFSIDA----FGV--- 69 (112)
T ss_dssp CCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESCEEEEETTCEEEEEEEECSSS-----CEEEEEGG----GTE---
T ss_pred CceeEEEEeccCccccEEeccEEEEEEEEEeeEEcCCEEEEeCCCEEEEEEEECCCC-----eEEEEEcC----CCc---
Confidence 4566666654433 34555545 489999998999999999999999999754 67776542 232
Q ss_pred cccccCCCCeEEEEEEEcCCCCceeeecCcchhcccceeeEEEeC
Q 008090 108 TQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLRSTLYGPIIILP 152 (578)
Q Consensus 108 ~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~ 152 (578)
+..+.||++++|.|++ .++|+||||||.+....+|.|.|+|.+
T Consensus 70 -~~~i~pG~~~~~~f~~-~~~G~y~~~C~~~~~~~~M~g~i~V~~ 112 (112)
T 1iby_A 70 -QEVIKAGETKTISFTA-DKAGAFTIWCQLHPKNIHLPGTLNVVE 112 (112)
T ss_dssp -EEEECTTCEEEEEEEC-CSCEEEEEBCSSSCTTTBCCEEEEEEC
T ss_pred -eeEeCCCCEEEEEEEC-CCCEEEEEECCCCCchHHCEEEEEEeC
Confidence 4679999999999996 789999999998776666999999964
No 71
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=99.40 E-value=3.5e-11 Score=130.96 Aligned_cols=236 Identities=10% Similarity=0.014 Sum_probs=146.1
Q ss_pred eeEEEECCCCC----------------CcEEEEecCCEEEEEEEeCCC-CceeEEEeeeeeccCCCCCCCC----Ccccc
Q 008090 52 RNIISVNGQFP----------------GPSLVAREGDRVLIKVTNHVS-NNVTIHWHGVRQVTSGWADGPA----YVTQC 110 (578)
Q Consensus 52 ~~~~~~Ng~~p----------------gP~i~v~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DG~~----~~~q~ 110 (578)
...+++||+.. .++|+|++|+++|+||.|... ....++.+|......+ .||.+ .+...
T Consensus 225 ~d~~liNG~~~~~c~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~i~gh~~~VIa-~DG~~v~P~~~~~l 303 (580)
T 3sqr_A 225 LENTLMNGTNTFDCSASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIA-NDLVPIVPYTTDTL 303 (580)
T ss_dssp BSEEEETTBCCCCCTTCCCTTBCCCCCCCEEECCTTCEEEEEEEECCSSCCEEEEETTCCEEEEE-ETTEEEEEEEESSE
T ss_pred CceEEECCcccCCCccccccccccCCCceeEEEcCCCEEEEEEEeccCCceeeEEeCCceEEEEE-eCCccCCceEeeEE
Confidence 45688999742 379999999999999999984 5678999998877655 79964 23456
Q ss_pred ccCCCCeEEEEEEEcCCCCceeeecCcchh-----cccceeeEEEeCCCCCCCCCCCC--CCcEeEEeee--cccCC--h
Q 008090 111 PIQTGQSYTYNFTITGQRGTLLWHAHISWL-----RSTLYGPIIILPKRNESYPFQKP--HKEIPILFGE--WFNVD--P 179 (578)
Q Consensus 111 ~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~-----~~Gl~G~liV~~~~~~~~p~~~~--~~e~~l~~~d--~~~~~--~ 179 (578)
.|.||||++..+++.+.+|.||........ ..+..-+++.........|.... ..+.. +.+ ..... .
T Consensus 304 ~i~pGqRydVlv~a~~~~g~Y~i~a~~~~~~~~~~~~~~~~aiL~Y~~~~~~~P~~~~~~~~~~~--~~~~~~~L~P~~~ 381 (580)
T 3sqr_A 304 LIGIGQRYDVIVEANAAADNYWIRGNWGTTCSTNNEAANATGILRYDSSSIANPTSVGTTPRGTC--EDEPVASLVPHLA 381 (580)
T ss_dssp EECTTCEEEEEEECCSCSSEEEEECCCCTTTSCBTTGGGCEEEEESSTTCCCCCCCCCCCCCCCS--CCSCGGGCCBSSC
T ss_pred EEccceEEEEEEEeCCCCCeEEEEEecccccCccCCCCceEEEEEECCCCCCCCCCCCCCccchh--hcccccccccCCC
Confidence 789999999999986668999998876421 11111223322211111111000 00000 000 00000 0
Q ss_pred HHHHHHH-----HhcCCCCCCCceEEEcCccCCCc-cc-------CC-----CCeeEEEE----eCCcEEEEEEEecC--
Q 008090 180 EAIISQA-----LQTGAGPNVSDAYTINGLPGPLY-NC-------SS-----KDTYKLKV----KPGKTYLLRLINAA-- 235 (578)
Q Consensus 180 ~~~~~~~-----~~~g~~~~~~~~~liNG~~~~~~-~~-------~~-----~~~~~l~v----~~G~~~rlRliN~~-- 235 (578)
....... ...+ ....-.+.|||.++... .. ++ ...-.+.+ +.|++|.|.|-|.+
T Consensus 382 ~~~~~~~~~~~~l~~~--~~~~~~w~iN~~s~~~~~~~P~L~~~~~g~~~~~~~~~~~~~~~~~~~~~~VeiVi~n~~~~ 459 (580)
T 3sqr_A 382 LDVGGYSLVDEQVSSA--FTNYFTWTINSSSLLLDWSSPTTLKIFNNETIFPTEYNVVALEQTNANEEWVVYVIEDLTGF 459 (580)
T ss_dssp CBCCSEEEEEEEEEEE--ESSSEEEEETTBCCCCCTTSCHHHHHHTTCCCCCGGGCEEEECC----CCEEEEEEEECSSS
T ss_pred CCCCCccceEEEEEec--cCCceeEEECCEecccCCCCCchhhhhcCCccCCCCcceeecccccCCCcEEEEEEeCCCcc
Confidence 0000000 0000 01123578999876310 00 00 01112333 45999999999987
Q ss_pred CCCeEEEEEcCceEEEEeecCC------------cccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEee
Q 008090 236 LNDELFFSIANHTLTVVEADAV------------YVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 236 ~~~~~~~~l~gh~~~via~DG~------------~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
.. .+.||||||.|+|++.+.. +..|...|++.+.|++.+.|.|+++++ |.|++|||.
T Consensus 460 ~~-~HP~HLHGh~F~vv~~g~G~f~~~~~~~~~nl~nP~~rDTv~v~~~g~~~irf~adNP---G~W~~HCHi 528 (580)
T 3sqr_A 460 GI-WHPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNP---GSWLLHCHI 528 (580)
T ss_dssp CC-CEEEEESSCCEEEEEEESSCCCTTTSGGGCCCBSCCEESEEEECTTSEEEEEEESCSC---EEEEEEECS
T ss_pred cc-ceeeEecCceEEEEecCCCccCccccccccccCCCceeeEEEeCCCceEEEEEEcCCC---eeeEEEECc
Confidence 44 4559999999999998432 235788999999999999999999998 999999995
No 72
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.32 E-value=5.2e-12 Score=113.89 Aligned_cols=98 Identities=16% Similarity=0.197 Sum_probs=71.0
Q ss_pred ceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCC------CCc-cccccCCCC--eEE
Q 008090 49 CHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGP------AYV-TQCPIQTGQ--SYT 119 (578)
Q Consensus 49 g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~------~~~-~q~~i~pG~--~~~ 119 (578)
+.....+.++|. ++|+|+|++||+|+|+++|... ...|.+.+......+.+.. ++. ....|.||+ +.+
T Consensus 47 ~~~~~~~~~~g~-~~p~i~V~~GD~V~~~~tN~~~--~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t 123 (154)
T 2cal_A 47 GFPFPSFEVHDK-KNPTLEIPAGATVDVTFINTNK--GFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTD 123 (154)
T ss_dssp TSCSSCEEETTE-ESCEEEECTTCEEEEEEEECCT--TCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEE
T ss_pred CCccccccccCC-CCCEEEEeCCCEEEEEEEcCCC--CeeeEEEEeecCcchhccccccccccccccccccCCCCceEEE
Confidence 444445666776 6799999999999999999743 3467776665444432210 000 012689999 999
Q ss_pred EEEEEcCCCCceeeecCcchhc-ccceeeEEEe
Q 008090 120 YNFTITGQRGTLLWHAHISWLR-STLYGPIIIL 151 (578)
Q Consensus 120 y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~ 151 (578)
|.|++ ++|+||||||..++. +||+|.|+|+
T Consensus 124 ~tft~--~pGtY~y~C~~~gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 124 FTWHP--TAGTYYYVCQIPGMAATGMFGKIVVK 154 (154)
T ss_dssp EEECC--CSEEEEEECCSTTTGGGTCEEEEEEC
T ss_pred EEEEE--CCceEEEECCCCCHHHCCCEEEEEEC
Confidence 99994 899999999987666 8999999985
No 73
>3gyr_A PHS, phenoxazinone synthase; metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis; 2.30A {Streptomyces antibioticus}
Probab=99.26 E-value=1.5e-10 Score=128.56 Aligned_cols=232 Identities=13% Similarity=0.052 Sum_probs=134.8
Q ss_pred eeeEEEECCCCCCcEEEEecCCEEEEEEEeCC-CCceeEEEeeee-------eccCCCCCCCC-----------Cccccc
Q 008090 51 TRNIISVNGQFPGPSLVAREGDRVLIKVTNHV-SNNVTIHWHGVR-------QVTSGWADGPA-----------YVTQCP 111 (578)
Q Consensus 51 ~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~-------~~~~~~~DG~~-----------~~~q~~ 111 (578)
.....++||+. -|.+.++. .++|+||.|.. .....+.+-|.. ....+ .||.. .++...
T Consensus 253 ~gd~~~vNG~~-~p~~~v~~-~~yRlRliNas~~~~~~l~i~~h~~~~~~~~~~vIa-~DG~~l~~Pv~v~~p~~~~~l~ 329 (612)
T 3gyr_A 253 FGPYTTVNGRI-WPYADVDD-GWYRLRLVNASNARIYNLVLIDEDDRPVPGVVHQIG-SDGGLLPRPVPVDFDDTLPVLS 329 (612)
T ss_dssp CCSEEEETTEE-SCEEEEES-SEEEEEEEECCSSCCEEEEEECTTSCBCTTSEEEEE-ETTEEEEEEEEECSSSSSSSEE
T ss_pred cCceeeecCCc-cceEeccC-cEEEEEEEeccCCcceeEEEccCCCccCCceEEEEE-eCCCccccceeccCcccccEEE
Confidence 35678999986 58998865 58999999987 456666665532 22222 68832 123467
Q ss_pred cCCCCeEEEEEEEcCCCCceeeecCcchhc--------ccc----eeeEEEeCCCCC-C--CCCC--------C--CCC-
Q 008090 112 IQTGQSYTYNFTITGQRGTLLWHAHISWLR--------STL----YGPIIILPKRNE-S--YPFQ--------K--PHK- 165 (578)
Q Consensus 112 i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~--------~Gl----~G~liV~~~~~~-~--~p~~--------~--~~~- 165 (578)
|.||||++.-+++.+.+|.+|+-....... .+. .-.+.+...... . .+.. . ...
T Consensus 330 i~pGeRydVlV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 409 (612)
T 3gyr_A 330 AAPAERFDLLVDFRALGGRRLRLVDKGPGAPAGTPDPLGGVRYPEVMEFRVRETCEEDSFALPEVLSGSFRRMSHDIPHG 409 (612)
T ss_dssp ECTTCEEEEEEECTTCTTCEEEEEECCTTSCTTSCBGGGTBSCCEEEEEEEECCSCCCCCCCCSSCCSSCCCCCTTSCCE
T ss_pred eccceEEEEEEECCCCCceEEEEEecCCcCCcCccCccccccccceeeecccCCCCCCcccccccccccccccccccccc
Confidence 899999999998755566655532221110 011 111222221110 0 0000 0 000
Q ss_pred cEeEEeeecccCC------------hHHHHHHHH------hcCCCCCCCceEEEcCccCCCcccCCCCeeEEEEeCCcEE
Q 008090 166 EIPILFGEWFNVD------------PEAIISQAL------QTGAGPNVSDAYTINGLPGPLYNCSSKDTYKLKVKPGKTY 227 (578)
Q Consensus 166 e~~l~~~d~~~~~------------~~~~~~~~~------~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~ 227 (578)
.....+..-.... ......... ...........+.+|++.+. ....+.++.|+++
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-------~~~~~~~~~g~~~ 482 (612)
T 3gyr_A 410 HRLIVLTPPGTKGSGGHPEIWEMAEVEDPADVQVPAEGVIQVTGADGRTKTYRRTARTFN-------DGLGFTIGEGTHE 482 (612)
T ss_dssp EEEEEEECTTCTTTTTCCEEEEEEECC-----CCSCTTEEEEECTTSCEEEEEEEECSTT-------SCCCEEEETTCEE
T ss_pred cccccccccccccccccccccccccccccccccccccceeeeccCCCccccccccCccCC-------CCcceEeCCCCEE
Confidence 0111111000000 000000000 00001112345677877652 3456899999999
Q ss_pred EEEEEecCCCCeEEEEEcCceEEEEeecCCcc---------------------------cceEecEEEeCCCceEEEEEE
Q 008090 228 LLRLINAALNDELFFSIANHTLTVVEADAVYV---------------------------KPFDTDKLLITPGQTANVLLR 280 (578)
Q Consensus 228 rlRliN~~~~~~~~~~l~gh~~~via~DG~~v---------------------------~P~~~d~v~l~pgeR~dv~v~ 280 (578)
+|.|+|.+...|. ||||||.|+|++.+|... ++.+.|++.|.+|+.+.|.++
T Consensus 483 ~w~i~N~~~~~HP-~HLHG~~F~Vl~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kDTv~v~~~~~v~i~~r 561 (612)
T 3gyr_A 483 QWTFLNLSPILHP-MHIHLADFQVLGRDAYDASGFDLALGGTRTPVRLDPDTPVPLAPNELGHKDVFQVPGPQGLRVMGK 561 (612)
T ss_dssp EEEEEECSSSCEE-EEESSCEEEEEEEEEEECTTEETTTTEESSCEEEEEEEECCCCTTCSSCBSEEEECSSEEEEEEEE
T ss_pred EEEEEcCCCCCcC-EeECCCcEEEEeecCCcCccccccccccccccccccccccCcccccCCCCcEEEECCCCEEEEEEE
Confidence 9999999976665 999999999999876421 223579999999999999999
Q ss_pred c-CCCCCCCceEEEEee
Q 008090 281 T-KPYFPNATFFMQARP 296 (578)
Q Consensus 281 ~-~~~~~~g~y~l~~~~ 296 (578)
+ +++ |.|++|||.
T Consensus 562 fadnp---G~w~~HCHi 575 (612)
T 3gyr_A 562 FDGAY---GRFMYHCHL 575 (612)
T ss_dssp CCSCC---EEEEEEESS
T ss_pred eCCCC---cceEEcCCC
Confidence 5 555 999999996
No 74
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.23 E-value=1.9e-11 Score=131.89 Aligned_cols=96 Identities=22% Similarity=0.240 Sum_probs=76.5
Q ss_pred CceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCC
Q 008090 48 LCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQ 127 (578)
Q Consensus 48 ~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~ 127 (578)
++....+|++|+++++|+|+|++||+|+++|+|.+...-. +||+.+.. .|+ +..+.||++++|.|++ .+
T Consensus 497 ~~v~V~m~~~n~~f~pp~I~V~~Gd~V~~~ltN~d~~~Dv--~Hgf~ip~----~gv----~~~i~PG~t~t~~Fta-~~ 565 (595)
T 1fwx_A 497 NKVRVYMSSVAPSFSIESFTVKEGDEVTVIVTNLDEIDDL--THGFTMGN----YGV----AMEIGPQMTSSVTFVA-AN 565 (595)
T ss_dssp TEEEEEEEEETTEESCSEEEEETTCEEEEEEEECCCSTTC--CEEEEETT----TTE----EEEECTTCEEEEEEEC-CS
T ss_pred CccceeEEEecCcccCCEEEEECCCEEEEEEEeCCCCCCc--eeeEEecC----CCc----ceeeCCCCeEEEEEEC-CC
Confidence 3577889999999999999999999999999998643211 47777642 333 2679999999999997 79
Q ss_pred CCceeeecCc-ch-hcccceeeEEEeCCC
Q 008090 128 RGTLLWHAHI-SW-LRSTLYGPIIILPKR 154 (578)
Q Consensus 128 ~Gt~wYH~H~-~~-~~~Gl~G~liV~~~~ 154 (578)
+|+||||||. .+ ...||.|.|+|++++
T Consensus 566 pGtY~yhC~e~Cg~~H~gM~G~IiV~p~~ 594 (595)
T 1fwx_A 566 PGVYWYYCQWFCHALHMEMRGRMLVEPKE 594 (595)
T ss_dssp CEEEEEECCSCCSTTCTTCEEEEEEECC-
T ss_pred CEEEEEECCCCCCCCccCCEEEEEEEcCC
Confidence 9999999993 22 226999999999764
No 75
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=99.09 E-value=1.3e-10 Score=103.21 Aligned_cols=95 Identities=19% Similarity=0.208 Sum_probs=71.8
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCC-CCCccccCCceEEE------EecCC---CCCCCCCCCCCCCCCCCcceeeeeCCC
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAE-SHPLHLHGFNFFVV------GLGFG---NYDPDKDLMNFNLVDPMERNTIGVPAG 523 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~-~HP~HlHG~~F~Vv------~~g~g---~~~~~~~~~~~~~~~p~~rDTv~vpp~ 523 (578)
..+.++.|++|+|++.|.+ .+ .|.||+|+....+. ....+ .+.+. -....++||..|.||
T Consensus 35 ~~i~v~~G~~V~~~~~N~~---~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~-------~~~~~~~~t~~l~pG 104 (139)
T 2aan_A 35 TELTVSAGQTVTIRFKNNS---AVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPA-------DKSNIIAESPLANGN 104 (139)
T ss_dssp SEEEECTTCEEEEEEECCC---SSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCS-------CCTTEEEECCCBCTT
T ss_pred CeEEECCCCEEEEEEEeCC---CCCCeeEEEeccccccchhhhhhhhcccccccccCc-------ccccccccccccCCC
Confidence 4578999999999999964 36 89999998653110 00000 11110 012357899999999
Q ss_pred cEEEEEEEccCceeeEEeeechhhhhccceEEEEEe
Q 008090 524 GWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 524 g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
+...+.|.+++||.|.||||+..|.+ ||++.|.|.
T Consensus 105 et~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 105 ETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp CEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred CEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 99999999999999999999999999 999999884
No 76
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=99.08 E-value=3.8e-10 Score=94.97 Aligned_cols=79 Identities=20% Similarity=0.302 Sum_probs=62.8
Q ss_pred CCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCc
Q 008090 58 NGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHI 137 (578)
Q Consensus 58 Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~ 137 (578)
+..|..+.|+|++||+|++ +|....++++|+++. .||.....+..|.||++++|.| .++|+|||||+.
T Consensus 27 ~~~F~P~~i~v~~Gd~V~~--~N~d~~~H~v~~~~~-------~~g~~~~~~~~~~pG~~~~~tf---~~~G~y~y~C~~ 94 (105)
T 2ov0_A 27 KMKYETPELHVKVGDTVTW--INREAMPHNVHFVAG-------VLGEAALKGPMMKKEQAYSLTF---TEAGTYDYHCTP 94 (105)
T ss_dssp TTEESSSEEEECTTCEEEE--EECSSSCBCCEECTT-------TSSSSCEECCCBCTTEEEEEEE---CSCEEEEEECSS
T ss_pred ecEEcCCEEEECCCCEEEE--EECCCCCEEEEEcCC-------CCCcccccccccCCCCEEEEEe---CCCEEEEEEeCC
Confidence 4455568999999999655 699888899998751 4666545556689999999888 478999999988
Q ss_pred chhcccceeeEEEe
Q 008090 138 SWLRSTLYGPIIIL 151 (578)
Q Consensus 138 ~~~~~Gl~G~liV~ 151 (578)
+. ||.|.|+|+
T Consensus 95 H~---gM~G~i~V~ 105 (105)
T 2ov0_A 95 HP---FMRGKVVVE 105 (105)
T ss_dssp CT---TCEEEEEEC
T ss_pred CC---CCEEEEEEC
Confidence 65 999999985
No 77
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=99.06 E-value=1.4e-10 Score=97.69 Aligned_cols=86 Identities=15% Similarity=0.169 Sum_probs=66.1
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEc-
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFA- 532 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a- 532 (578)
+.+.++.|++|+|+ |.+ ...|++|+||..|.... + . . .+...+++..++||+...++|.+
T Consensus 19 ~~i~v~~Gd~V~~~--N~~---~~~H~v~~~~~~~~~~~-g--~-----~------~~~~~~~~~~i~pG~~~~~~f~~~ 79 (105)
T 3cvb_A 19 ANVTVHPGDTVKWV--NNK---LPPHNILFDDKQVPGAS-K--E-----L------ADKLSHSQLMFSPGESYEITFSSD 79 (105)
T ss_dssp SEEEECTTEEEEEE--ECS---SCCEEEEECTTSSGGGC-H--H-----H------HHHHCEEEEECSTTCEEEEEECTT
T ss_pred CEEEEcCCCEEEEE--ECC---CCCCeEEEeCCCCCccc-c--c-----c------cccccccccccCCCCeEEEEEecC
Confidence 46789999999874 643 47999999998764310 0 0 0 00112578899999999999998
Q ss_pred cCceeeEEeeechhhhhccceEEEEEec
Q 008090 533 DNPGVWFMHCHLDVHTSWGLRMAWIVQN 560 (578)
Q Consensus 533 dnpG~wl~HCHil~H~d~GM~~~~~V~~ 560 (578)
+.||.|.|||| .|...||++.+.|.+
T Consensus 80 ~~~G~y~y~C~--~H~~~GM~G~i~V~~ 105 (105)
T 3cvb_A 80 FPAGTYTYYCA--PHRGAGMVGKITVEG 105 (105)
T ss_dssp SCSEEEEEECT--TTGGGTCEEEEEECC
T ss_pred CCCeeEEEEeC--CchhcCCEEEEEEcC
Confidence 79999999999 799999999999863
No 78
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.86 E-value=4e-09 Score=88.81 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=60.2
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCC----CccccccCCCCeEEEEEEEcCCCCceeeecCcch
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPA----YVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISW 139 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~----~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~ 139 (578)
+.|+|++||+|++ +|....++++|.|+...+. .+|.. ......+.||++++|.|+++..+|+|||||+ ..
T Consensus 20 ~~i~v~~Gd~V~~--~n~~~~~H~~~~~~~~~~~---~~g~~~~~~~~~~~~~~pG~~~~~~f~~~~~~G~y~y~C~-~H 93 (106)
T 2gim_A 20 AKLTIKPGDTVEF--LNNKVPPHNVVFDAALNPA---KSADLAKSLSHKQLLMSPGQSTSTTFPADAPAGEYTFYCE-PH 93 (106)
T ss_dssp SEEEECTTCEEEE--EECSSSCCCBEECSSSSTT---CCHHHHHHHCBCSCCCSTTCEEEEECCTTCCSEEEEEECT-TT
T ss_pred CEEEECCCCEEEE--EECCCCCceEEEeCCCCcc---cccccchhccccceeeCCCCEEEEEEecCCCCceEEEEeC-Ch
Confidence 7999999998755 5887778888888754321 12210 0123458999999999974468999999999 33
Q ss_pred hcccceeeEEEeC
Q 008090 140 LRSTLYGPIIILP 152 (578)
Q Consensus 140 ~~~Gl~G~liV~~ 152 (578)
..+||.|.|+|.+
T Consensus 94 ~~~GM~G~i~V~~ 106 (106)
T 2gim_A 94 RGAGMVGKITVAG 106 (106)
T ss_dssp GGGTCEEEEEECC
T ss_pred hhcCcEEEEEEcC
Confidence 3379999999963
No 79
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.78 E-value=2.1e-08 Score=88.82 Aligned_cols=91 Identities=13% Similarity=0.176 Sum_probs=65.5
Q ss_pred CCCCcEEEEecCCEEEEEEEeCCCC-ceeEEEeeeeec-----------c---CCC-CCCCCC--ccccccCCCCeEEEE
Q 008090 60 QFPGPSLVAREGDRVLIKVTNHVSN-NVTIHWHGVRQV-----------T---SGW-ADGPAY--VTQCPIQTGQSYTYN 121 (578)
Q Consensus 60 ~~pgP~i~v~~Gd~v~v~l~N~l~~-~~siH~HG~~~~-----------~---~~~-~DG~~~--~~q~~i~pG~~~~y~ 121 (578)
+|--+.|+|++||+|+++|+|.... +++++.++.... . ..+ .++.+. .....|.||+++++.
T Consensus 31 ~F~p~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~t~~l~pGet~~v~ 110 (139)
T 2aan_A 31 AFDKTELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPADKSNIIAESPLANGNETVEVT 110 (139)
T ss_dssp SBSCSEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCSCCTTEEEECCCBCTTCEEEEE
T ss_pred EEcCCeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccccCcccccccccccccCCCCEEEEE
Confidence 3434799999999999999999877 888888874310 0 000 011110 012348999999999
Q ss_pred EEEcCCCCceeeecCcchhcccceeeEEEe
Q 008090 122 FTITGQRGTLLWHAHISWLRSTLYGPIIIL 151 (578)
Q Consensus 122 f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 151 (578)
|++ ..+|+|+||||......||.|.|+|+
T Consensus 111 f~~-~~pG~y~f~C~~~~H~~GM~G~i~V~ 139 (139)
T 2aan_A 111 FTA-PAAGTYLYICTVPGHYPLMQGKLVVN 139 (139)
T ss_dssp EEC-CSSEEEEEECCSTTTTTTSEEEEEEC
T ss_pred EEC-CCCeEEEEEcCCCChHHcCEEEEEEC
Confidence 996 68999999999765444999999984
No 80
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.73 E-value=1.1e-08 Score=86.07 Aligned_cols=85 Identities=13% Similarity=0.157 Sum_probs=63.2
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEc-
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFA- 532 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a- 532 (578)
..+.++.|++|+|+ |.+ ...|++|+|+..+.. . .|. .. ....+|++.+.||+...+.|.+
T Consensus 20 ~~i~v~~Gd~V~~~--n~~---~~~H~~~~~~~~~~~-~--~g~-----~~------~~~~~~~~~~~pG~~~~~~f~~~ 80 (106)
T 2gim_A 20 AKLTIKPGDTVEFL--NNK---VPPHNVVFDAALNPA-K--SAD-----LA------KSLSHKQLLMSPGQSTSTTFPAD 80 (106)
T ss_dssp SEEEECTTCEEEEE--ECS---SSCCCBEECSSSSTT-C--CHH-----HH------HHHCBCSCCCSTTCEEEEECCTT
T ss_pred CEEEECCCCEEEEE--ECC---CCCceEEEeCCCCcc-c--ccc-----cc------hhccccceeeCCCCEEEEEEecC
Confidence 45788999999886 543 368999998764311 0 000 00 0011477889999999999888
Q ss_pred cCceeeEEeeechhhhhccceEEEEEe
Q 008090 533 DNPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 533 dnpG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
+.||.|.|||| .|.+.||.+.+.|.
T Consensus 81 ~~~G~y~y~C~--~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 81 APAGEYTFYCE--PHRGAGMVGKITVA 105 (106)
T ss_dssp CCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred CCCceEEEEeC--ChhhcCcEEEEEEc
Confidence 89999999999 89999999999985
No 81
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.72 E-value=2.2e-08 Score=87.71 Aligned_cols=79 Identities=14% Similarity=0.209 Sum_probs=56.6
Q ss_pred CCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCc
Q 008090 58 NGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHI 137 (578)
Q Consensus 58 Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~ 137 (578)
+..|-.+.|+|++||+|++ +|....++++++... .+|........+.||++++|.| .++|+|+|+|-.
T Consensus 54 ~~~F~P~~i~V~~GdtV~~--~N~d~~~H~v~~~~~-------~~g~~~~~s~~l~pG~t~~~tF---~~~G~y~y~C~~ 121 (132)
T 3c75_A 54 KMKYLTPEVTIKAGETVYW--VNGEVMPHNVAFKKG-------IVGEDAFRGEMMTKDQAYAITF---NEAGSYDYFCTP 121 (132)
T ss_dssp TTEESSSEEEECTTCEEEE--EECSSSCBCCEECTT-------TSSSSCEECCCBCTTEEEEEEE---CSCEEEEEECSS
T ss_pred eeEEeCCEEEECCCCEEEE--EECCCCceEEEEeCC-------CCCcccccccccCCCCEEEEEc---CCCEEEEEEeCC
Confidence 4455447999999999765 588776766665431 2222222234588999999888 368999999987
Q ss_pred chhcccceeeEEEe
Q 008090 138 SWLRSTLYGPIIIL 151 (578)
Q Consensus 138 ~~~~~Gl~G~liV~ 151 (578)
|. ||.|.|+|+
T Consensus 122 H~---gM~G~I~V~ 132 (132)
T 3c75_A 122 HP---FMRGKVIVE 132 (132)
T ss_dssp CT---TCEEEEEEC
T ss_pred Cc---CCEEEEEEC
Confidence 54 999999984
No 82
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.69 E-value=4.6e-08 Score=81.31 Aligned_cols=79 Identities=10% Similarity=0.106 Sum_probs=60.7
Q ss_pred CCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCc
Q 008090 58 NGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHI 137 (578)
Q Consensus 58 Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~ 137 (578)
|..|-...|++++||+|++.++|.....+++...+.... ..+.||++.+|.|+. ..+|+|.|+|..
T Consensus 22 ~~~F~P~~i~v~~G~tV~~~~~n~d~~~H~~~~~~~~~~-------------~~~~pg~~~~~~~t~-~~~G~Y~y~C~~ 87 (100)
T 4hci_A 22 DDYFNPNVITIPINESTTLLLKNKGKSEHTFTIKKLGID-------------VVVESGKEKNITVKP-KSAGTYELICRY 87 (100)
T ss_dssp TTEEESSEEEECTTSCEEEEEEECSSSCEEEEEGGGTEE-------------EEECTTCEEEEEECC-CSCEEEEEECTT
T ss_pred CCEEeCCEEEECCCCEEEEEEEcCCCceEEEEEecCCcc-------------eeecCCcceeEEEec-ccCceEEEECcc
Confidence 444443699999999999999999776655555443221 347899999999995 889999999974
Q ss_pred chhcccceeeEEEe
Q 008090 138 SWLRSTLYGPIIIL 151 (578)
Q Consensus 138 ~~~~~Gl~G~liV~ 151 (578)
+. ..||.|.|+|+
T Consensus 88 H~-~~gM~G~i~Ve 100 (100)
T 4hci_A 88 HL-LKGMEGKVIVK 100 (100)
T ss_dssp TG-GGTCEEEEEEC
T ss_pred cc-CCCCEEEEEEC
Confidence 32 26999999995
No 83
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=98.66 E-value=1.1e-07 Score=84.21 Aligned_cols=89 Identities=13% Similarity=0.129 Sum_probs=63.6
Q ss_pred CcEEEEecCCEEEEEEEe--CCCCceeEEEeeee--ec----------cC-CCC--CCCCC--ccccccCCCCeEEEEEE
Q 008090 63 GPSLVAREGDRVLIKVTN--HVSNNVTIHWHGVR--QV----------TS-GWA--DGPAY--VTQCPIQTGQSYTYNFT 123 (578)
Q Consensus 63 gP~i~v~~Gd~v~v~l~N--~l~~~~siH~HG~~--~~----------~~-~~~--DG~~~--~~q~~i~pG~~~~y~f~ 123 (578)
.+.|+|++||+|+++++| .....++++.++.. .. .. .+. ++.+. .....|.||++.++.|+
T Consensus 32 P~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~pG~~~~~~~~ 111 (140)
T 1qhq_A 32 QTSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVTFR 111 (140)
T ss_dssp CSEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTTCTTEEEECCCBCTTEEEEEEEE
T ss_pred CCeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccccCccccccccccceeeCCCceeEEEEE
Confidence 379999999999999999 66778888887321 00 00 000 01000 01135899999999999
Q ss_pred EcCCCCceeeecCcchhc-ccceeeEEEeC
Q 008090 124 ITGQRGTLLWHAHISWLR-STLYGPIIILP 152 (578)
Q Consensus 124 ~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~ 152 (578)
+ ..+|+|||||+..+.. .||.|.|+|.|
T Consensus 112 ~-~~~G~y~f~C~~~~H~~~GM~g~i~V~p 140 (140)
T 1qhq_A 112 T-PAPGTYLYICTFPGHYLAGMKGTLTVTP 140 (140)
T ss_dssp C-CSSEEEEEECCSTTTTTTTCEEEEEEEC
T ss_pred e-CCCeeEEEEeCCcCHhhcCCEEEEEEcC
Confidence 7 7899999999986555 79999999974
No 84
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=98.65 E-value=8.4e-08 Score=85.01 Aligned_cols=99 Identities=19% Similarity=0.154 Sum_probs=71.5
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCC--ceEEEE-ec--CC---CCCCCCCCCCCCCCCCCcceeeeeCCCcE
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGF--NFFVVG-LG--FG---NYDPDKDLMNFNLVDPMERNTIGVPAGGW 525 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~--~F~Vv~-~g--~g---~~~~~~~~~~~~~~~p~~rDTv~vpp~g~ 525 (578)
..+.++.|++|+|++.|.+. +.+.|.||++.. .+.-+. .+ .+ .|-+. .-....+++|..|.||..
T Consensus 33 ~~i~v~~G~tV~~~~~N~~~-~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~t~~l~pG~~ 105 (140)
T 1qhq_A 33 TSLSLPANTVVRLDFVNQNN-LGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPP------PDTPNALAWTAMLNAGES 105 (140)
T ss_dssp SEEEEETTCEEEEEEEECCS-SCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCC------TTCTTEEEECCCBCTTEE
T ss_pred CeEEECCCCEEEEEEECCCC-CCCceeEEEeccCcchhhhhhhhhhhcccccccCc------cccccccccceeeCCCce
Confidence 46789999999999999321 248999999853 121100 00 00 00000 001234689999999999
Q ss_pred EEEEEEccCceeeEEeeechhhhhccceEEEEEe
Q 008090 526 VAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 526 v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
..+.|.++.||.|.|||++..|...||.+.+.|.
T Consensus 106 ~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 106 GSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT 139 (140)
T ss_dssp EEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred eEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence 9999999999999999999999999999999986
No 85
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.52 E-value=9.1e-08 Score=79.13 Aligned_cols=77 Identities=17% Similarity=0.216 Sum_probs=57.2
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCC----CccccccCCCCeEEEEEEEcCCCCceeeecCcch
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPA----YVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISW 139 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~----~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~ 139 (578)
+.|+|++||+|+ ++|....++++|+++...+ +|.- ......+.||+++++.|. .+|+|+|||+. .
T Consensus 18 ~~i~v~~G~~V~--~~n~~~~~H~~~~~~~~~p-----~~~~~~~~~~~~~~~~pG~~~~~tf~---~~G~y~y~C~~-H 86 (98)
T 2plt_A 18 KTLTIKSGETVN--FVNNAGFPHNIVFDEDAIP-----SGVNADAISRDDYLNAPGETYSVKLT---AAGEYGYYCEP-H 86 (98)
T ss_dssp SEEEECTTCEEE--EEECSSCCEEEEECGGGSC-----TTCCHHHHCEEEEECSTTCEEEEECC---SCEEEEEECGG-G
T ss_pred CEEEECCCCEEE--EEECCCCceEEEEeCCCCC-----CccccccccccceecCCCCEEEEEeC---CCeEEEEEcCC-c
Confidence 689999999865 5898877899999875322 2211 011245899999998874 68999999993 2
Q ss_pred hcccceeeEEEe
Q 008090 140 LRSTLYGPIIIL 151 (578)
Q Consensus 140 ~~~Gl~G~liV~ 151 (578)
..+||.|.|+|+
T Consensus 87 ~~~gM~G~i~V~ 98 (98)
T 2plt_A 87 QGAGMVGKIIVQ 98 (98)
T ss_dssp GGGTCEEEEEEC
T ss_pred cccCCeEEEEEC
Confidence 336999999984
No 86
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.49 E-value=1.1e-07 Score=78.59 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=59.4
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCc-ceeeeeCCCcEEEEEEEc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPME-RNTIGVPAGGWVAIRFFA 532 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~-rDTv~vpp~g~v~irf~a 532 (578)
..+.++.|++|+|+ |.+ ...|.+|+++..+- +. ..+.+ +|+..+.||+...+.|
T Consensus 19 ~~i~v~~G~~V~~~--n~~---~~~H~~~~~~~~~p--g~----------------~~~~~~~~~~~~~pG~~~~~tf-- 73 (98)
T 1pcs_A 19 STVTIKAGEEVKWV--NNK---LSPHNIVFDADGVP--AD----------------TAAKLSHKGLLFAAGESFTSTF-- 73 (98)
T ss_dssp SEEEECTTCEEEEE--ECS---SCCEEEEECCSSSC--HH----------------HHHHHCEEEEECSTTCEEEEEC--
T ss_pred CEEEECCCCEEEEE--ECC---CCCcEEEEeCCCCC--cc----------------ccccccccccccCCCCEEEEEc--
Confidence 35789999999987 532 36899999874321 00 00111 5788999999888766
Q ss_pred cCceeeEEeeechhhhhccceEEEEEe
Q 008090 533 DNPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 533 dnpG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
+.||.|.|||+ .|...||.+.+.|+
T Consensus 74 ~~~G~y~~~C~--~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 74 TEPGTYTYYCE--PHRGAGMVGKVVVE 98 (98)
T ss_dssp CSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred CCCeEEEEEcC--CccccCCeEEEEEC
Confidence 89999999999 79999999999884
No 87
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.46 E-value=3.4e-07 Score=75.62 Aligned_cols=80 Identities=15% Similarity=0.210 Sum_probs=55.2
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCcchhccc
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLRST 143 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~~G 143 (578)
+.|+|++||+|++ +|....+++++.++...+... .++.. .....+.||+++++.| ..+|+|+|||+. ...+|
T Consensus 19 ~~i~v~~G~~V~~--~n~~~~~H~~~~~~~~~pg~~-~~~~~-~~~~~~~pG~~~~~tf---~~~G~y~~~C~~-H~~~g 90 (98)
T 1pcs_A 19 STVTIKAGEEVKW--VNNKLSPHNIVFDADGVPADT-AAKLS-HKGLLFAAGESFTSTF---TEPGTYTYYCEP-HRGAG 90 (98)
T ss_dssp SEEEECTTCEEEE--EECSSCCEEEEECCSSSCHHH-HHHHC-EEEEECSTTCEEEEEC---CSCEEEEEECGG-GTTTT
T ss_pred CEEEECCCCEEEE--EECCCCCcEEEEeCCCCCccc-ccccc-ccccccCCCCEEEEEc---CCCeEEEEEcCC-ccccC
Confidence 6899999998765 587767888887764321000 00000 1234589999999887 468999999993 23379
Q ss_pred ceeeEEEe
Q 008090 144 LYGPIIIL 151 (578)
Q Consensus 144 l~G~liV~ 151 (578)
|.|.|+|+
T Consensus 91 M~G~i~V~ 98 (98)
T 1pcs_A 91 MVGKVVVE 98 (98)
T ss_dssp CEEEEEEC
T ss_pred CeEEEEEC
Confidence 99999984
No 88
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.44 E-value=2.9e-07 Score=76.01 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=59.7
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEcc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFAD 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 533 (578)
..+.++.|++|+| .|.+ ...|.+|+|+..+- ..++. ...++|+..+.||+...+.| +
T Consensus 18 ~~i~v~~G~~V~~--~n~~---~~~H~~~~~~~~~p------~~~~~----------~~~~~~~~~~~pG~~~~~tf--~ 74 (98)
T 2plt_A 18 KTLTIKSGETVNF--VNNA---GFPHNIVFDEDAIP------SGVNA----------DAISRDDYLNAPGETYSVKL--T 74 (98)
T ss_dssp SEEEECTTCEEEE--EECS---SCCEEEEECGGGSC------TTCCH----------HHHCEEEEECSTTCEEEEEC--C
T ss_pred CEEEECCCCEEEE--EECC---CCceEEEEeCCCCC------Ccccc----------ccccccceecCCCCEEEEEe--C
Confidence 3578999999988 4543 36899999875210 00000 01247889999999888765 5
Q ss_pred CceeeEEeeechhhhhccceEEEEEe
Q 008090 534 NPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 534 npG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
.||.|.|||| .|.+.||.+.+.|.
T Consensus 75 ~~G~y~y~C~--~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 75 AAGEYGYYCE--PHQGAGMVGKIIVQ 98 (98)
T ss_dssp SCEEEEEECG--GGGGGTCEEEEEEC
T ss_pred CCeEEEEEcC--CccccCCeEEEEEC
Confidence 8999999999 79999999999884
No 89
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=98.41 E-value=6.3e-07 Score=72.84 Aligned_cols=73 Identities=19% Similarity=0.366 Sum_probs=57.2
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEcc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFAD 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 533 (578)
..+.++.|+.|+|+ |.+ ...|.+|+++.. +...++..+.||+...+.| +
T Consensus 19 ~~i~v~~Gd~V~~~--n~~---~~~H~v~~~~~~------------------------~~~~~~~~~~~g~~~~~~f--~ 67 (91)
T 1bxv_A 19 STIEIQAGDTVQWV--NNK---LAPHNVVVEGQP------------------------ELSHKDLAFSPGETFEATF--S 67 (91)
T ss_dssp SEEEECTTCEEEEE--ECS---SCCEEEEETTCG------------------------GGCEEEEECSTTCEEEEEC--C
T ss_pred CEEEECCCCEEEEE--ECC---CCCcEEEEeCCC------------------------ccCcccceeCCCCEEEEEe--C
Confidence 35688999999886 532 368999988720 0125778889998877765 8
Q ss_pred CceeeEEeeechhhhhccceEEEEEe
Q 008090 534 NPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 534 npG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
.||.|.|||+ .|...||.+.+.|+
T Consensus 68 ~~G~y~~~C~--~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 68 EPGTYTYYCE--PHRGAGMVGKIVVQ 91 (91)
T ss_dssp SCEEEEEECT--TTGGGTCEEEEEEC
T ss_pred CCEEEEEEeC--CCccCCCEEEEEEC
Confidence 9999999999 89999999999884
No 90
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=98.41 E-value=5.5e-07 Score=73.20 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=53.8
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCcchhccc
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLRST 143 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~~G 143 (578)
+.|++++||+|++ .|.....++++.++.. ++ +.....+.||+++++.| ..+|+|||||+.+ ..+|
T Consensus 19 ~~i~v~~Gd~V~~--~n~~~~~H~v~~~~~~----~~-----~~~~~~~~~g~~~~~~f---~~~G~y~~~C~~H-~~~g 83 (91)
T 1bxv_A 19 STIEIQAGDTVQW--VNNKLAPHNVVVEGQP----EL-----SHKDLAFSPGETFEATF---SEPGTYTYYCEPH-RGAG 83 (91)
T ss_dssp SEEEECTTCEEEE--EECSSCCEEEEETTCG----GG-----CEEEEECSTTCEEEEEC---CSCEEEEEECTTT-GGGT
T ss_pred CEEEECCCCEEEE--EECCCCCcEEEEeCCC----cc-----CcccceeCCCCEEEEEe---CCCEEEEEEeCCC-ccCC
Confidence 6999999999765 5876677888877621 00 01224589999988877 4699999999933 2359
Q ss_pred ceeeEEEe
Q 008090 144 LYGPIIIL 151 (578)
Q Consensus 144 l~G~liV~ 151 (578)
|.|.|+|+
T Consensus 84 M~g~i~V~ 91 (91)
T 1bxv_A 84 MVGKIVVQ 91 (91)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEC
Confidence 99999984
No 91
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.40 E-value=8.8e-07 Score=72.96 Aligned_cols=77 Identities=18% Similarity=0.263 Sum_probs=55.2
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCC--ccccccCCCCeEEEEEEEcCCCCceeeecCcchhc
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAY--VTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLR 141 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~--~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~ 141 (578)
+.|+|++||+| +++|....+++++.++... .+|..+ .....+.||+++++.| ..+|+|+|||+.+ ..
T Consensus 19 ~~i~v~~G~~V--~~~n~~~~~H~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~tf---~~~G~y~y~C~~H-~~ 87 (97)
T 1b3i_A 19 KALSISAGDTV--EFVMNKVGPHNVIFDKVPA-----GESAPALSNTKLAIAPGSFYSVTL---GTPGTYSFYCTPH-RG 87 (97)
T ss_dssp SEEEECTTCEE--EEEECSSCCCCBEEEECCT-----TSCHHHHCBCCCCCSCSCCEEEEC---CSCSEEEEECSST-TT
T ss_pred CEEEECCCCEE--EEEECCCCCeEEEEeCCCC-----ccccccccccceecCCCCEEEEEe---CCCeEEEEEccCh-hh
Confidence 68999999985 5568776778888876432 122111 0124589999998887 4799999999932 33
Q ss_pred ccceeeEEEe
Q 008090 142 STLYGPIIIL 151 (578)
Q Consensus 142 ~Gl~G~liV~ 151 (578)
+||.|.|+|+
T Consensus 88 ~gM~G~i~V~ 97 (97)
T 1b3i_A 88 AGMVGTITVE 97 (97)
T ss_dssp TTCEEEEEEC
T ss_pred cCCEEEEEEC
Confidence 6999999984
No 92
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.37 E-value=7.5e-07 Score=74.13 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=54.1
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCC-------CCCCc--cccccCCCCeEEEEEEEcCCCCceeee
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWAD-------GPAYV--TQCPIQTGQSYTYNFTITGQRGTLLWH 134 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~D-------G~~~~--~q~~i~pG~~~~y~f~~~~~~Gt~wYH 134 (578)
+.|+|++||+|+ ++|....+++++.+. +.. .+ ..+++ ....+.||+++++.| ..+|+|+||
T Consensus 17 ~~i~v~~G~tV~--~~n~~~~~H~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~pG~~~~~tf---~~~G~y~y~ 86 (102)
T 1kdj_A 17 DSITVSAGEAVE--FTLVGETGHNIVFDI----PAG-APGTVASELKAASMDENDLLSEDEPSFKAKV---STPGTYTFY 86 (102)
T ss_dssp SEEEECTTCCEE--EEECSSSCBCCEECC----CTT-CCHHHHHHHHHTSCCTTCCBBTTBCEEEECC---CSCEEEEEE
T ss_pred CEEEECCCCEEE--EEECCCCCeEEEEeC----ccc-ccccccchhhcccccccceecCCCCEEEEEe---CCCeEEEEE
Confidence 789999999976 568876777777762 110 11 01111 224589999998877 469999999
Q ss_pred cCcchhcccceeeEEEe
Q 008090 135 AHISWLRSTLYGPIIIL 151 (578)
Q Consensus 135 ~H~~~~~~Gl~G~liV~ 151 (578)
|+ ....+||.|.|+|+
T Consensus 87 C~-~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 87 CT-PHKSANMKGTLTVK 102 (102)
T ss_dssp CS-TTGGGTCEEEEEEC
T ss_pred eC-CCcccCCeEEEEEC
Confidence 99 33337999999984
No 93
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.35 E-value=1.1e-06 Score=75.42 Aligned_cols=75 Identities=16% Similarity=0.184 Sum_probs=52.6
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCcchhccc
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLRST 143 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~~G 143 (578)
..|+|++||+|++.++|. + |++......+-+|. ....+.||++++|.| +.+|+|||+|..+ ..+|
T Consensus 21 ~~i~V~~GdtV~f~~~~~---~-----H~v~~~~~~~P~g~---~~f~~~pg~t~s~TF---~~pG~y~y~C~~H-~~~G 85 (123)
T 3erx_A 21 AFVRAEPGDVINFVPTDK---S-----HNVEAIKEILPEGV---ESFKSKINESYTLTV---TEPGLYGVKCTPH-FGMG 85 (123)
T ss_dssp SEEEECTTEEEEEEESST---T-----CCCEECTTSSCTTC---CCCBCCTTCCEEEEE---CSCEEEEEECGGG-TTTT
T ss_pred CEEEECCCCEEEEEECCC---C-----ceEEEcCCcCCCCc---cceecCCCCEEEEEe---CCCeEEEEEeCCC-CcCC
Confidence 699999999987777662 3 44443221123342 124467999988888 4689999999843 2379
Q ss_pred ceeeEEEeCC
Q 008090 144 LYGPIIILPK 153 (578)
Q Consensus 144 l~G~liV~~~ 153 (578)
|.|.|+|.++
T Consensus 86 M~G~I~V~~~ 95 (123)
T 3erx_A 86 MVGLVQVGDA 95 (123)
T ss_dssp CEEEEEESSS
T ss_pred cEEEEEECCC
Confidence 9999999864
No 94
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.35 E-value=3.2e-07 Score=75.65 Aligned_cols=78 Identities=14% Similarity=0.289 Sum_probs=58.3
Q ss_pred eEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccC
Q 008090 455 TVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADN 534 (578)
Q Consensus 455 ~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 534 (578)
.+.++.|++|+|+ |.+ ...|.+++++..+. .+ . ....+++..+.||+...+.| +.
T Consensus 20 ~i~v~~G~~V~~~--n~~---~~~H~~~~~~~~~~-----~~-----~--------~~~~~~~~~~~~g~~~~~tf--~~ 74 (97)
T 1b3i_A 20 ALSISAGDTVEFV--MNK---VGPHNVIFDKVPAG-----ES-----A--------PALSNTKLAIAPGSFYSVTL--GT 74 (97)
T ss_dssp EEEECTTCEEEEE--ECS---SCCCCBEEEECCTT-----SC-----H--------HHHCBCCCCCSCSCCEEEEC--CS
T ss_pred EEEECCCCEEEEE--ECC---CCCeEEEEeCCCCc-----cc-----c--------ccccccceecCCCCEEEEEe--CC
Confidence 5688999999887 532 36899988875440 00 0 00115677888998877766 89
Q ss_pred ceeeEEeeechhhhhccceEEEEEe
Q 008090 535 PGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 535 pG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
||.|.|||+ .|.+.||.+.+.|+
T Consensus 75 ~G~y~y~C~--~H~~~gM~G~i~V~ 97 (97)
T 1b3i_A 75 PGTYSFYCT--PHRGAGMVGTITVE 97 (97)
T ss_dssp CSEEEEECS--STTTTTCEEEEEEC
T ss_pred CeEEEEEcc--ChhhcCCEEEEEEC
Confidence 999999999 89999999999884
No 95
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.30 E-value=1.1e-06 Score=76.05 Aligned_cols=76 Identities=14% Similarity=0.273 Sum_probs=52.8
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCcchhccc
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLRST 143 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~~G 143 (578)
+.|+|++||+|++.++|. + |++......+-||. ....+.||++++|.| +.+|+|||+|..| ..+|
T Consensus 23 ~~i~V~~GDtVtf~n~~~---~-----H~v~~~~~~~P~g~---~~f~s~pGet~s~TF---~~pG~y~y~C~~H-~~~G 87 (127)
T 3tu6_A 23 AVIRAQPGDTVTFVAKDK---G-----HNSALMKGGAPEGA---ETWKGKINEEITVTL---SKPGVYMYQCAPH-VGMG 87 (127)
T ss_dssp SEEEECTTCEEEEECSSS---S-----CCCEECTTCSCTTC---CCCBCCTTCCCEEEC---CSCEEEEEECTTT-GGGT
T ss_pred CEEEECCCCEEEEEECCC---C-----ceEEEccCcCCCCc---cceecCCCCEEEEEe---CCCeEEEEEeCCC-CcCC
Confidence 699999999977665553 3 55543221112332 124467999988888 4689999999854 3479
Q ss_pred ceeeEEEeCCC
Q 008090 144 LYGPIIILPKR 154 (578)
Q Consensus 144 l~G~liV~~~~ 154 (578)
|.|.|+|.++.
T Consensus 88 M~G~I~V~~~~ 98 (127)
T 3tu6_A 88 MIGAIVVGEPA 98 (127)
T ss_dssp CEEEEEESSCT
T ss_pred cEEEEEECcCC
Confidence 99999998754
No 96
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=98.29 E-value=2.4e-06 Score=72.39 Aligned_cols=75 Identities=23% Similarity=0.281 Sum_probs=57.6
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEcc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFAD 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 533 (578)
..+.++.|+.++|.+.|.+. ..|- |.+-+. .-+..+.||+...+.|.++
T Consensus 38 ~~i~v~~G~~V~~~~~n~d~---~~H~-------~~i~~~---------------------~~~~~i~pG~~~~~~f~~~ 86 (112)
T 1iby_A 38 ETLVVKKGDAVKVVVENKSP---ISEG-------FSIDAF---------------------GVQEVIKAGETKTISFTAD 86 (112)
T ss_dssp CEEEEETTCEEEEEEEECSS---SCEE-------EEEGGG---------------------TEEEEECTTCEEEEEEECC
T ss_pred CEEEEeCCCEEEEEEEECCC---CeEE-------EEEcCC---------------------CceeEeCCCCEEEEEEECC
Confidence 35789999999999999642 3333 333111 1256789999999999999
Q ss_pred CceeeEEeeechhhhhccceEEEEEec
Q 008090 534 NPGVWFMHCHLDVHTSWGLRMAWIVQN 560 (578)
Q Consensus 534 npG~wl~HCHil~H~d~GM~~~~~V~~ 560 (578)
.||.|.||||+..|... |.+.+.|++
T Consensus 87 ~~G~y~~~C~~~~~~~~-M~g~i~V~~ 112 (112)
T 1iby_A 87 KAGAFTIWCQLHPKNIH-LPGTLNVVE 112 (112)
T ss_dssp SCEEEEEBCSSSCTTTB-CCEEEEEEC
T ss_pred CCEEEEEECCCCCchHH-CEEEEEEeC
Confidence 99999999999887554 999998863
No 97
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.28 E-value=2.1e-06 Score=70.94 Aligned_cols=77 Identities=13% Similarity=0.205 Sum_probs=55.4
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCC------ccccccCCCCeEEEEEEEcCCCCceeeecCc
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAY------VTQCPIQTGQSYTYNFTITGQRGTLLWHAHI 137 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~------~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~ 137 (578)
+.|+|++||+| +++|....+++++.++... .+|... .....+.||+++++.|. .+|+|+|||+.
T Consensus 17 ~~i~v~~G~tV--~~~n~~~~~H~~~~~~~~~-----p~g~~~~~~~~~~~~~~~~~G~~~~~~f~---~~G~y~~~C~~ 86 (99)
T 1byp_A 17 SDLSIASGEKI--TFKNNAGFPHNDLFDKKEV-----PAGVDVTKISMPEEDLLNAPGEEYSVTLT---EKGTYKFYCAP 86 (99)
T ss_dssp SEEEECTTEEE--EEEECSSCCBCCEECTTSS-----CTTCCHHHHSCCTTCCBCSTTCEEEEEEC---SCEEEEEECGG
T ss_pred CEEEECCCCEE--EEEECCCCcceEEEeCCCC-----ccccccccccccccceeeCCCCEEEEEeC---CCcEEEEEcCC
Confidence 58999999985 5589877788888776322 222210 11235789999988774 68999999993
Q ss_pred chhcccceeeEEEe
Q 008090 138 SWLRSTLYGPIIIL 151 (578)
Q Consensus 138 ~~~~~Gl~G~liV~ 151 (578)
...+||.|.|+|+
T Consensus 87 -H~~~gM~G~i~V~ 99 (99)
T 1byp_A 87 -HAGAGMVGKVTVN 99 (99)
T ss_dssp -GTTTTCEEEEEEC
T ss_pred -ccccCCEEEEEEC
Confidence 2336999999984
No 98
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.24 E-value=2.1e-06 Score=70.91 Aligned_cols=77 Identities=9% Similarity=0.194 Sum_probs=54.5
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCC----C--ccccccCCCCeEEEEEEEcCCCCceeeecCc
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPA----Y--VTQCPIQTGQSYTYNFTITGQRGTLLWHAHI 137 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~----~--~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~ 137 (578)
+.|+|++||+|+ ++|....+++++.++... .+|.. + .....+.||+++++.|. .+|+|+|+|+.
T Consensus 17 ~~i~v~~G~tV~--~~n~~~~~H~v~~~~~~~-----p~~~~~~~~~~~~~~~~~~~G~~~~~tf~---~~G~y~~~C~~ 86 (99)
T 1plc_A 17 SEFSISPGEKIV--FKNNAGFPHNIVFDEDSI-----PSGVDASKISMSEEDLLNAKGETFEVALS---NKGEYSFYCSP 86 (99)
T ss_dssp SEEEECTTCEEE--EEECSSCCBCCEECTTSS-----CTTCCHHHHCCCTTCCBCSTTCEEEEECC---SCEEEEEECGG
T ss_pred CEEEECCCCEEE--EEECCCCceEEEEeCCCC-----cccccccccccccCccccCCCCEEEEEEC---CCceEEEEcCC
Confidence 699999999765 588877677777765321 12221 0 11135799999988774 68999999993
Q ss_pred chhcccceeeEEEe
Q 008090 138 SWLRSTLYGPIIIL 151 (578)
Q Consensus 138 ~~~~~Gl~G~liV~ 151 (578)
+ ..+||.|.|+|+
T Consensus 87 H-~~~gM~G~i~V~ 99 (99)
T 1plc_A 87 H-QGAGMVGKVTVN 99 (99)
T ss_dssp G-TTTTCEEEEEEC
T ss_pred C-cccCCEEEEEEC
Confidence 2 337999999984
No 99
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.19 E-value=2.2e-06 Score=70.84 Aligned_cols=83 Identities=13% Similarity=0.167 Sum_probs=59.3
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEcc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFAD 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 533 (578)
..+.++.|++|+| .|.+ ...|.+|+++..|- .+ ++... ....+|++.+.||+...+.| +
T Consensus 17 ~~i~v~~G~tV~~--~n~~---~~~H~~~~~~~~~p---~g---~~~~~--------~~~~~~~~~~~~G~~~~~~f--~ 75 (99)
T 1byp_A 17 SDLSIASGEKITF--KNNA---GFPHNDLFDKKEVP---AG---VDVTK--------ISMPEEDLLNAPGEEYSVTL--T 75 (99)
T ss_dssp SEEEECTTEEEEE--EECS---SCCBCCEECTTSSC---TT---CCHHH--------HSCCTTCCBCSTTCEEEEEE--C
T ss_pred CEEEECCCCEEEE--EECC---CCcceEEEeCCCCc---cc---ccccc--------ccccccceeeCCCCEEEEEe--C
Confidence 3578999999888 4543 36899999985431 00 00000 01126677889999888766 5
Q ss_pred CceeeEEeeechhhhhccceEEEEEe
Q 008090 534 NPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 534 npG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
.||.|.|||+ .|.+.||.+.+.|.
T Consensus 76 ~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1byp_A 76 EKGTYKFYCA--PHAGAGMVGKVTVN 99 (99)
T ss_dssp SCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred CCcEEEEEcC--CccccCCEEEEEEC
Confidence 9999999999 79999999999884
No 100
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.18 E-value=5.8e-06 Score=68.44 Aligned_cols=72 Identities=19% Similarity=0.357 Sum_probs=57.0
Q ss_pred eEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccC
Q 008090 455 TVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADN 534 (578)
Q Consensus 455 ~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 534 (578)
.+.++.|+.|+|++.|.+ ...|.|.+.+.. -...+.||....+.|.++.
T Consensus 29 ~i~v~~G~tV~~~~~n~d---~~~H~~~~~~~~----------------------------~~~~~~pg~~~~~~~t~~~ 77 (100)
T 4hci_A 29 VITIPINESTTLLLKNKG---KSEHTFTIKKLG----------------------------IDVVVESGKEKNITVKPKS 77 (100)
T ss_dssp EEEECTTSCEEEEEEECS---SSCEEEEEGGGT----------------------------EEEEECTTCEEEEEECCCS
T ss_pred EEEECCCCEEEEEEEcCC---CceEEEEEecCC----------------------------cceeecCCcceeEEEeccc
Confidence 578999999999999954 245655443322 1235678899999999999
Q ss_pred ceeeEEeeechhhhhccceEEEEEe
Q 008090 535 PGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 535 pG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
||.|.|+|. .|...||.+.+.|+
T Consensus 78 ~G~Y~y~C~--~H~~~gM~G~i~Ve 100 (100)
T 4hci_A 78 AGTYELICR--YHLLKGMEGKVIVK 100 (100)
T ss_dssp CEEEEEECT--TTGGGTCEEEEEEC
T ss_pred CceEEEECc--cccCCCCEEEEEEC
Confidence 999999996 69999999999884
No 101
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=98.16 E-value=6.4e-06 Score=71.36 Aligned_cols=89 Identities=8% Similarity=0.034 Sum_probs=59.0
Q ss_pred cEEEEecC-CEEEEEEEeCCCCc-----eeEEEe--eeeec-------cCCCCC----CCCC-c-cccccCCCCeEEEEE
Q 008090 64 PSLVAREG-DRVLIKVTNHVSNN-----VTIHWH--GVRQV-------TSGWAD----GPAY-V-TQCPIQTGQSYTYNF 122 (578)
Q Consensus 64 P~i~v~~G-d~v~v~l~N~l~~~-----~siH~H--G~~~~-------~~~~~D----G~~~-~-~q~~i~pG~~~~y~f 122 (578)
..|.|++| |+|+|+|+|....+ +++-+- |.... ....++ +.+. + ....|.||++.++.|
T Consensus 18 ~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~~~~~~~~~t~~l~pGet~svtf 97 (129)
T 1cuo_A 18 RSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKRVIAFTPIIGGGEKTSVKF 97 (129)
T ss_dssp SEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCSEECCCBCTTCEEEEEE
T ss_pred CeEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhccccccccccccccceeeeeEECCCCEEEEEE
Confidence 58999999 99999999987543 333322 21000 000001 1111 0 113479999999999
Q ss_pred EEc--CCCCceeeecCcchhcccceeeEEEeC
Q 008090 123 TIT--GQRGTLLWHAHISWLRSTLYGPIIILP 152 (578)
Q Consensus 123 ~~~--~~~Gt~wYH~H~~~~~~Gl~G~liV~~ 152 (578)
+++ .++|+|||.|-..+.+.||.|.|+|.+
T Consensus 98 ~~~~~~~~G~Y~f~C~~pgH~~~M~G~i~V~~ 129 (129)
T 1cuo_A 98 KVSALSKDEAYTYFCSYPGHFSMMRGTLKLEE 129 (129)
T ss_dssp EGGGCCTTSCEEEECCSTTCTTTSEEEEEEEC
T ss_pred eccccCCCceEEEEeCCCCchHcCEEEEEEeC
Confidence 973 279999999987666668999999963
No 102
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.14 E-value=4.1e-06 Score=71.85 Aligned_cols=75 Identities=9% Similarity=0.063 Sum_probs=51.5
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCcchhccc
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLRST 143 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~~G 143 (578)
..|+|++||+|+ ++|.. .++++..+. ..+-+|. ....+.||++++|.|+ .+|+|+|+|-.+ ..+|
T Consensus 22 ~~i~V~~GDTV~--f~n~~-~~Hnv~~~~-----~~~p~g~---~~~~~~pg~t~s~TF~---~~G~y~Y~C~~H-~~~G 86 (124)
T 3ef4_A 22 GFVKVEAGDTVK--FVPTD-KSHNAESVR-----EVWPEGV---APVKGGFSKEVVFNAE---KEGLYVLKCAPH-YGMG 86 (124)
T ss_dssp SEEEECTTCEEE--EECSS-SSCCCEECT-----TTSCTTS---CCCBCCTTCCEEEECC---SSEEEEEECTTT-GGGT
T ss_pred CEEEECCCCEEE--EEECC-CCccEEEeC-----CcCCCCc---cccccCCCCEEEEEeC---CCeEEEEEcCCC-CcCC
Confidence 699999999965 55554 455554431 1112332 2244679999988884 689999999733 2379
Q ss_pred ceeeEEEeCC
Q 008090 144 LYGPIIILPK 153 (578)
Q Consensus 144 l~G~liV~~~ 153 (578)
|.|.|+|.++
T Consensus 87 M~G~I~V~~p 96 (124)
T 3ef4_A 87 MVVLVQVGKP 96 (124)
T ss_dssp CEEEEEESSC
T ss_pred CEEEEEECCC
Confidence 9999999874
No 103
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.12 E-value=2.9e-06 Score=70.50 Aligned_cols=85 Identities=13% Similarity=0.132 Sum_probs=57.7
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCc-ceeeeeCCCcEEEEEEEc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPME-RNTIGVPAGGWVAIRFFA 532 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~-rDTv~vpp~g~v~irf~a 532 (578)
..+.++.|++|+|+ |.+ ...|.++++.-... .+.+... . ..+.+ .+++.+.||+...+.|
T Consensus 17 ~~i~v~~G~tV~~~--n~~---~~~H~~~~~~~~~~-----~~~~~~~------~-~~~~~~~~~~~~~pG~~~~~tf-- 77 (102)
T 1kdj_A 17 DSITVSAGEAVEFT--LVG---ETGHNIVFDIPAGA-----PGTVASE------L-KAASMDENDLLSEDEPSFKAKV-- 77 (102)
T ss_dssp SEEEECTTCCEEEE--ECS---SSCBCCEECCCTTC-----CHHHHHH------H-HHTSCCTTCCBBTTBCEEEECC--
T ss_pred CEEEECCCCEEEEE--ECC---CCCeEEEEeCcccc-----cccccch------h-hcccccccceecCCCCEEEEEe--
Confidence 35789999999986 543 36899888731100 0000000 0 00122 4677889998877766
Q ss_pred cCceeeEEeeechhhhhccceEEEEEe
Q 008090 533 DNPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 533 dnpG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
+.||.|.|||+ .|.+.||.+.+.|+
T Consensus 78 ~~~G~y~y~C~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 78 STPGTYTFYCT--PHKSANMKGTLTVK 102 (102)
T ss_dssp CSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred CCCeEEEEEeC--CCcccCCeEEEEEC
Confidence 89999999999 99999999999884
No 104
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=98.07 E-value=7.1e-06 Score=74.05 Aligned_cols=93 Identities=10% Similarity=0.113 Sum_probs=60.3
Q ss_pred CCCCcEEEE-ecCCEEEEEEEeCCCCc-----eeEEE--eeeee---------ccCCCC-CCCCC-c-cccccCCCCeEE
Q 008090 60 QFPGPSLVA-REGDRVLIKVTNHVSNN-----VTIHW--HGVRQ---------VTSGWA-DGPAY-V-TQCPIQTGQSYT 119 (578)
Q Consensus 60 ~~pgP~i~v-~~Gd~v~v~l~N~l~~~-----~siH~--HG~~~---------~~~~~~-DG~~~-~-~q~~i~pG~~~~ 119 (578)
+|--..|.| +.||+|+|+|+|....+ +++-+ +|... ....+. .+-+. + ....|.||++.+
T Consensus 54 ~F~P~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~~~d~~vl~~t~~l~pGet~s 133 (167)
T 3ay2_A 54 QFNTKDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKPDDARVVAHTKLIGGGEESS 133 (167)
T ss_dssp CBSCSEEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSCTTCTTEEEECCCBCTTCEEE
T ss_pred eEecceEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhccccccccccccchhccceeeCCCCEEE
Confidence 443358999 99999999999997653 33322 12100 000000 01010 0 113479999999
Q ss_pred EEEEEc-CCCCceeeecCcchhcccceeeEEEeC
Q 008090 120 YNFTIT-GQRGTLLWHAHISWLRSTLYGPIIILP 152 (578)
Q Consensus 120 y~f~~~-~~~Gt~wYH~H~~~~~~Gl~G~liV~~ 152 (578)
+.|+++ -++|+|||+|-..+.+.||.|.|+|.+
T Consensus 134 vtf~~~~lkpG~Y~f~Ct~PgH~~gM~G~i~V~~ 167 (167)
T 3ay2_A 134 LTLDPAKLADGDYKFACTFPGHGALMNGKVTLVD 167 (167)
T ss_dssp EEECGGGGTTSCEEEECCSTTGGGTSEEEEEEEC
T ss_pred EEEecCCCCCcEEEEEcCCCCchhcCEEEEEEeC
Confidence 999863 279999999987766669999999963
No 105
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=98.07 E-value=1.1e-05 Score=67.43 Aligned_cols=77 Identities=14% Similarity=0.226 Sum_probs=52.4
Q ss_pred CCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCcch
Q 008090 60 QFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISW 139 (578)
Q Consensus 60 ~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~ 139 (578)
.|--..|+|++||+|++ .|.....+++..... ..|........+.||+++++.| ..+|+|+|+|-.+.
T Consensus 30 ~F~P~~i~V~~G~tV~~--~N~d~~~H~v~~~~~-------~~~~~~~~s~~l~~g~~~~~tf---~~~G~y~~~C~~H~ 97 (106)
T 1id2_A 30 KYLTPEVTIKAGETVYW--VNGEVMPHNVAFKKG-------IVGEDAFRGEMMTKDQAYAITF---NEAGSYDYFCTPHP 97 (106)
T ss_dssp EESSSEEEECTTCEEEE--EECSSSCBCCEECTT-------TSSSSCEECCCBCTTEEEEEEE---CSCEEEEEECSSCT
T ss_pred EEeCCEEEECCCCEEEE--EECCCCcEEEEEeCC-------CCCcccccccccCCCCEEEEEe---CCCEEEEEEeCCCC
Confidence 44336999999999765 588765555544321 1111111113478999998888 46899999998764
Q ss_pred hcccceeeEEEe
Q 008090 140 LRSTLYGPIIIL 151 (578)
Q Consensus 140 ~~~Gl~G~liV~ 151 (578)
||.|.|+|+
T Consensus 98 ---~M~G~I~V~ 106 (106)
T 1id2_A 98 ---FMRGKVIVE 106 (106)
T ss_dssp ---TCEEEEEEC
T ss_pred ---CCEEEEEEC
Confidence 999999984
No 106
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=98.02 E-value=1.7e-05 Score=84.05 Aligned_cols=92 Identities=18% Similarity=0.256 Sum_probs=65.4
Q ss_pred eeeEEEECCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCc
Q 008090 51 TRNIISVNGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGT 130 (578)
Q Consensus 51 ~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt 130 (578)
...+...+-.|-.+.|+|++||+|++.|+|.....-. .||+.+.. -|+ ..-+.||++.++.|++ ..+|+
T Consensus 545 ~V~Mta~~~~FsP~eI~VP~GdtVrfiLTN~D~veDV--iHSF~IPs----lGI----K~DaiPGrtnsvtFta-dkPGv 613 (638)
T 3sbq_A 545 RVYMTSMAPAFGVQEFTVKQGDEVTVTITNIDQIEDV--SHGFVVVN----HGV----SMEISPQQTSSITFVA-DKPGL 613 (638)
T ss_dssp EEEEEEETTEESCCEEEEETTCEEEEEEEECCCSTTC--CEEEEETT----TTE----EEEECTTCEEEEEEEC-CSCEE
T ss_pred EEEEEEEcccccCCEEEEecCceeEEEEecCCcCCCc--eeeeEecC----CCc----eeeeCCCCeEEEEEEc-CCCEE
Confidence 3445555666666799999999999999996421111 24444331 121 1357899999999996 89999
Q ss_pred eeeecCcc-hh-cccceeeEEEeCC
Q 008090 131 LLWHAHIS-WL-RSTLYGPIIILPK 153 (578)
Q Consensus 131 ~wYH~H~~-~~-~~Gl~G~liV~~~ 153 (578)
|||+|..- +. ..+|.|.++|+|+
T Consensus 614 Y~y~CSE~CGa~Hs~M~G~ViVEPa 638 (638)
T 3sbq_A 614 HWYYCSWFCHALHMEMVGRMMVEPA 638 (638)
T ss_dssp EEEECCSCCSTTCTTCEEEEEEECC
T ss_pred EEEECCCcCCCCcccceEEEEEecC
Confidence 99999852 22 2789999999874
No 107
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.01 E-value=2.1e-05 Score=64.77 Aligned_cols=77 Identities=9% Similarity=0.075 Sum_probs=52.5
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCC----ccccccCCCCeEEEEEEEcCCCCceeeecCcch
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAY----VTQCPIQTGQSYTYNFTITGQRGTLLWHAHISW 139 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~----~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~ 139 (578)
+.|+|++||+|++ +|....++++.... ..+-+|.-. .....+.||+++++.| ..+|+|+|+|..+
T Consensus 18 ~~i~v~~GdtV~~--~n~~~~~H~v~~~~-----~~~p~g~~~~~~~~~~~~~~~g~~~~~tf---~~~G~y~y~C~~H- 86 (98)
T 1iuz_A 18 SKISVAAGEAIEF--VNNAGFPHNIVFDE-----DAVPAGVDADAISYDDYLNSKGETVVRKL---STPGVYGVYCEPH- 86 (98)
T ss_dssp SEEEECTTCEEEE--EECSSCCEEEEECT-----TSSCTTCCHHHHCEEEEECSTTCEEEEEC---CSCEEEEEECTTT-
T ss_pred CEEEECCCCEEEE--EECCCCCEEEEEeC-----CCCccccccccccccccccCCCCEEEEEc---CCCEEEEEEchhh-
Confidence 6999999998655 58866666655443 111233210 0113589999998887 4789999999863
Q ss_pred hcccceeeEEEe
Q 008090 140 LRSTLYGPIIIL 151 (578)
Q Consensus 140 ~~~Gl~G~liV~ 151 (578)
..+||.|.|+|+
T Consensus 87 ~~~gM~G~I~V~ 98 (98)
T 1iuz_A 87 AGAGMKMTITVQ 98 (98)
T ss_dssp GGGTCEEEEEEC
T ss_pred ccCCCEEEEEEC
Confidence 236999999984
No 108
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=97.99 E-value=2e-05 Score=67.68 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=49.9
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCcchhccc
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLRST 143 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~~G 143 (578)
+.|+|++||+|++ .|... + |.+......+.||.. .....||++++|.| ..+|+|+|+|..+ ..+|
T Consensus 21 ~~i~V~~GdtV~f--~~~~~-~-----H~v~~~~~~~p~~~~---~~~~~pG~t~~~tF---~~~G~y~y~C~~H-~~~g 85 (123)
T 1paz_A 21 AYIKANPGDTVTF--IPVDK-G-----HNVESIKDMIPEGAE---KFKSKINENYVLTV---TQPGAYLVKCTPH-YAMG 85 (123)
T ss_dssp SEEEECTTCEEEE--EESSS-S-----CCCEECTTCSCTTCC---CCBCCTTCCEEEEC---CSCEEEEEECTTT-GGGT
T ss_pred CEEEECCCCEEEE--EECCC-C-----eEEEEecccCCCCcc---ceecCCCCEEEEEe---CCCEEEEEEeCCc-ccCC
Confidence 6999999999754 55533 3 444432111123321 13356899888777 4689999999742 2379
Q ss_pred ceeeEEEeCC
Q 008090 144 LYGPIIILPK 153 (578)
Q Consensus 144 l~G~liV~~~ 153 (578)
|.|.|+|.++
T Consensus 86 M~G~I~V~~~ 95 (123)
T 1paz_A 86 MIALIAVGDS 95 (123)
T ss_dssp CEEEEEESSS
T ss_pred CEEEEEEcCC
Confidence 9999999874
No 109
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=97.95 E-value=4.6e-05 Score=65.96 Aligned_cols=88 Identities=11% Similarity=0.104 Sum_probs=57.4
Q ss_pred cEEEE-ecCCEEEEEEEeCCCCc-----eeEEEeeee--e-------ccCCCCC----CCCC-c-cccccCCCCeEEEEE
Q 008090 64 PSLVA-REGDRVLIKVTNHVSNN-----VTIHWHGVR--Q-------VTSGWAD----GPAY-V-TQCPIQTGQSYTYNF 122 (578)
Q Consensus 64 P~i~v-~~Gd~v~v~l~N~l~~~-----~siH~HG~~--~-------~~~~~~D----G~~~-~-~q~~i~pG~~~~y~f 122 (578)
..|.| ++||+|+|+|+|....+ +++-+-... . .....+| +-+. + ....|.||++.++.|
T Consensus 18 ~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~pGet~svtf 97 (129)
T 2ccw_A 18 KEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIGGGESDSVTF 97 (129)
T ss_dssp SEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEEEEEE
T ss_pred ceEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccccccccccceeeeeEECCCCEEEEEE
Confidence 58999 99999999999997553 443332110 0 0000001 1111 1 113479999999999
Q ss_pred EEc-CCCCc-eeeecCcchhcccceeeEEEe
Q 008090 123 TIT-GQRGT-LLWHAHISWLRSTLYGPIIIL 151 (578)
Q Consensus 123 ~~~-~~~Gt-~wYH~H~~~~~~Gl~G~liV~ 151 (578)
+++ -.+|+ |||.|...+.+.||.|.|+|.
T Consensus 98 ~~~~l~~G~~Y~f~C~~pgH~~gM~G~i~V~ 128 (129)
T 2ccw_A 98 DVSKIAAGENYAYFCSFPGHWAMMKGTLKLG 128 (129)
T ss_dssp EGGGSCTTCCEEEECCSTTGGGTSEEEEEEC
T ss_pred eccccCCCceEEEEeCCCChhHcCEEEEEEe
Confidence 973 04655 999998777667999999996
No 110
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=97.93 E-value=2e-05 Score=67.72 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=50.7
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCcchhccc
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLRST 143 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~~G 143 (578)
+.|+|++||+|+ ++|... + |.+......+.||.. ...+.||++++|.| ..+|+|+|+|..+ ..+|
T Consensus 21 ~~i~V~~GdtV~--f~n~~~-~-----H~v~~~~~~~p~~~~---~~~~~pG~t~~~tF---~~~G~y~y~C~~H-~~~g 85 (123)
T 1pmy_A 21 ALVRLKPGDSIK--FLPTDK-G-----HNVETIKGMAPDGAD---YVKTTVGQEAVVKF---DKEGVYGFKCAPH-YMMG 85 (123)
T ss_dssp SEEEECTTCEEE--EECSSS-S-----CCCEECTTSSCTTCC---CCBCCTTSCEEEEC---CSCEEEEEECSTT-TTTT
T ss_pred CEEEECCCCEEE--EEECCC-C-----cEEEEecccCCCCcc---ceecCCCCEEEEEe---CCCeEEEEEeCCc-cccC
Confidence 699999999965 556543 3 444332211123321 13467999988887 3689999999742 2379
Q ss_pred ceeeEEEeCCC
Q 008090 144 LYGPIIILPKR 154 (578)
Q Consensus 144 l~G~liV~~~~ 154 (578)
|.|.|+|.+++
T Consensus 86 M~G~I~V~~~~ 96 (123)
T 1pmy_A 86 MVALVVVGDKR 96 (123)
T ss_dssp CEEEEEESSCC
T ss_pred CEEEEEEcCCC
Confidence 99999998643
No 111
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=97.93 E-value=2.3e-05 Score=70.18 Aligned_cols=89 Identities=16% Similarity=0.314 Sum_probs=60.6
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcc---eeeeeCCCc--EEEE
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMER---NTIGVPAGG--WVAI 528 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~r---DTv~vpp~g--~v~i 528 (578)
+.+.++.|+.|.+++.|.+ ....|-+-++.. +. .+.... ...+... -+..|.||+ ...+
T Consensus 61 p~i~V~~GD~V~~~~tN~~--~~~~H~~~i~~~-------~~-~~~~~~------~~~~~~~~~~~~~~i~PG~sgt~t~ 124 (154)
T 2cal_A 61 PTLEIPAGATVDVTFINTN--KGFGHSFDITKK-------GP-PYAVMP------VIDPIVAGTGFSPVPKDGKFGYTDF 124 (154)
T ss_dssp CEEEECTTCEEEEEEEECC--TTCCCCCEEESC-------CS-CCCSSC------CCCSEEEEBCCCCCCBTTBEEEEEE
T ss_pred CEEEEeCCCEEEEEEEcCC--CCeeeEEEEeec-------Cc-chhccc------cccccccccccccccCCCCceEEEE
Confidence 4689999999999999953 134555544421 10 111000 0000000 112678998 9999
Q ss_pred EEEccCceeeEEeeechhhhhccceEEEEEe
Q 008090 529 RFFADNPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 529 rf~adnpG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
.|.+ .||.+.||||+.-|...||-+.+.|+
T Consensus 125 tft~-~pGtY~y~C~~~gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 125 TWHP-TAGTYYYVCQIPGMAATGMFGKIVVK 154 (154)
T ss_dssp EECC-CSEEEEEECCSTTTGGGTCEEEEEEC
T ss_pred EEEE-CCceEEEECCCCCHHHCCCEEEEEEC
Confidence 9999 99999999999999999999999873
No 112
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=97.90 E-value=5.8e-05 Score=65.15 Aligned_cols=93 Identities=15% Similarity=0.149 Sum_probs=60.3
Q ss_pred CCCCcEEEE-ecCCEEEEEEEeCCCCc-----eeEEEeeee---------eccCCCCC----CCCC-c-cccccCCCCeE
Q 008090 60 QFPGPSLVA-REGDRVLIKVTNHVSNN-----VTIHWHGVR---------QVTSGWAD----GPAY-V-TQCPIQTGQSY 118 (578)
Q Consensus 60 ~~pgP~i~v-~~Gd~v~v~l~N~l~~~-----~siH~HG~~---------~~~~~~~D----G~~~-~-~q~~i~pG~~~ 118 (578)
+|--..|.| +.||+|+|+|+|....+ +++-+-... +.....+| +-+. + ....|.||++.
T Consensus 13 ~F~p~~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~pGes~ 92 (128)
T 2iaa_C 13 QFNTKSIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVIGGGETD 92 (128)
T ss_dssp CBSCSEEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEE
T ss_pred eEecCEEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceeeCCCCEE
Confidence 343358999 99999999999997554 554433210 00000001 1111 1 11247999999
Q ss_pred EEEEEEc-CCCCc-eeeecCcchhcccceeeEEEeC
Q 008090 119 TYNFTIT-GQRGT-LLWHAHISWLRSTLYGPIIILP 152 (578)
Q Consensus 119 ~y~f~~~-~~~Gt-~wYH~H~~~~~~Gl~G~liV~~ 152 (578)
++.|+++ -.+|+ |+|.|...+.+.||.|.|+|.+
T Consensus 93 ~vtf~~~~l~~G~~Y~f~C~~PgH~~gM~G~i~V~~ 128 (128)
T 2iaa_C 93 SVTFDVSKLKEGEDYAFFCSFPGHWSIMKGTIELGS 128 (128)
T ss_dssp EEEEESSCCCTTCCEEEECCSTTCTTTSEEEEEECC
T ss_pred EEEEeccccCCCceEEEEECCCChhHCCEEEEEEeC
Confidence 9999963 16885 9999988777779999999963
No 113
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=97.87 E-value=2.1e-05 Score=64.83 Aligned_cols=83 Identities=13% Similarity=0.169 Sum_probs=57.8
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEcc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFAD 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 533 (578)
..+.++.|++|+| .|.+ ...|.++++...+- .+ .+. .. ....++.+.+.||+...+.| +
T Consensus 17 ~~i~v~~G~tV~~--~n~~---~~~H~v~~~~~~~p---~~---~~~------~~--~~~~~~~~~~~~G~~~~~tf--~ 75 (99)
T 1plc_A 17 SEFSISPGEKIVF--KNNA---GFPHNIVFDEDSIP---SG---VDA------SK--ISMSEEDLLNAKGETFEVAL--S 75 (99)
T ss_dssp SEEEECTTCEEEE--EECS---SCCBCCEECTTSSC---TT---CCH------HH--HCCCTTCCBCSTTCEEEEEC--C
T ss_pred CEEEECCCCEEEE--EECC---CCceEEEEeCCCCc---cc---ccc------cc--cccccCccccCCCCEEEEEE--C
Confidence 4678999999988 4543 36899988875320 00 000 00 01124557788998877755 6
Q ss_pred CceeeEEeeechhhhhccceEEEEEe
Q 008090 534 NPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 534 npG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
.||.|.|||+ .|...||.+.+.|.
T Consensus 76 ~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 76 NKGEYSFYCS--PHQGAGMVGKVTVN 99 (99)
T ss_dssp SCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred CCceEEEEcC--CCcccCCEEEEEEC
Confidence 9999999999 79999999999884
No 114
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=97.85 E-value=7.3e-05 Score=64.54 Aligned_cols=92 Identities=13% Similarity=0.112 Sum_probs=58.8
Q ss_pred CCCCcEEEE-ecCCEEEEEEEeCCCCc-----eeEEEeee--ee-------ccCCCCC----CCCC-c-cccccCCCCeE
Q 008090 60 QFPGPSLVA-REGDRVLIKVTNHVSNN-----VTIHWHGV--RQ-------VTSGWAD----GPAY-V-TQCPIQTGQSY 118 (578)
Q Consensus 60 ~~pgP~i~v-~~Gd~v~v~l~N~l~~~-----~siH~HG~--~~-------~~~~~~D----G~~~-~-~q~~i~pG~~~ 118 (578)
+|--..|.| ++||+|+|+|+|....+ +++-.-.. .. .....+| +-+. + ....|.||++.
T Consensus 14 ~F~p~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~pGet~ 93 (128)
T 1nwp_A 14 SFNTKDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGDARVIAHTKVIGAGEKD 93 (128)
T ss_dssp CBSCSEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTCTTEEEECCCBCTTCEE
T ss_pred cEecCEEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccccccccccchhheeeeeeCCCCEE
Confidence 333358999 99999999999987553 44443211 00 0000001 0010 1 01248999999
Q ss_pred EEEEEEc-CCCCc-eeeecCcchhcccceeeEEEe
Q 008090 119 TYNFTIT-GQRGT-LLWHAHISWLRSTLYGPIIIL 151 (578)
Q Consensus 119 ~y~f~~~-~~~Gt-~wYH~H~~~~~~Gl~G~liV~ 151 (578)
++.|+++ -.+|+ |||.|...+.+.||.|.|+|.
T Consensus 94 svtf~~~~l~~G~~Y~f~C~~PgH~~gM~G~i~V~ 128 (128)
T 1nwp_A 94 SVTFDVSKLAAGEKYGFFCSFPGHISMMKGTVTLK 128 (128)
T ss_dssp EEEEEGGGSCTTSCEEEECCSTTCGGGSEEEEEEC
T ss_pred EEEEeccccCCCceEEEEECCCChhHCCEEEEEEC
Confidence 9999963 15776 999998776666999999984
No 115
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.82 E-value=5.2e-05 Score=81.94 Aligned_cols=79 Identities=15% Similarity=0.333 Sum_probs=62.9
Q ss_pred eeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEc
Q 008090 453 TRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFA 532 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 532 (578)
.+.+.++.|+.|+|.+.|.....+..|.|+++++.+. ..+.||....+.|++
T Consensus 512 pp~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~~gv~----------------------------~~i~PG~t~t~~Fta 563 (595)
T 1fwx_A 512 IESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGNYGVA----------------------------MEIGPQMTSSVTFVA 563 (595)
T ss_dssp CSEEEEETTCEEEEEEEECCCSTTCCEEEEETTTTEE----------------------------EEECTTCEEEEEEEC
T ss_pred CCEEEEECCCEEEEEEEeCCCCCCceeeEEecCCCcc----------------------------eeeCCCCeEEEEEEC
Confidence 4568899999999999995321235788888765321 357789999999999
Q ss_pred cCceeeEEeee---chhhhhccceEEEEEecC
Q 008090 533 DNPGVWFMHCH---LDVHTSWGLRMAWIVQNG 561 (578)
Q Consensus 533 dnpG~wl~HCH---il~H~d~GM~~~~~V~~~ 561 (578)
+.||.|.|||| ...|. ||.+.+.|+++
T Consensus 564 ~~pGtY~yhC~e~Cg~~H~--gM~G~IiV~p~ 593 (595)
T 1fwx_A 564 ANPGVYWYYCQWFCHALHM--EMRGRMLVEPK 593 (595)
T ss_dssp CSCEEEEEECCSCCSTTCT--TCEEEEEEECC
T ss_pred CCCEEEEEECCCCCCCCcc--CCEEEEEEEcC
Confidence 99999999999 45675 99999999864
No 116
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=97.79 E-value=4.7e-05 Score=65.32 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=50.3
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCcchhccc
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHISWLRST 143 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~~~~G 143 (578)
+.|+|++||+|++ .|... . |++......+.+|. ....+.||++++|.| +.+|+|+|+|..|..
T Consensus 21 ~~i~V~~GdtV~f--~n~d~-~-----H~v~~~~~~~p~~~---~~~~~~~g~t~~~tF---~~~G~y~y~C~~H~~--- 83 (122)
T 2ux6_A 21 ASLKVAPGDTVTF--IPTDK-G-----HNVETIKGMIPDGA---EAFKSKINENYKVTF---TAPGVYGVKCTPHPF--- 83 (122)
T ss_dssp SEEEECTTEEEEE--EESSS-S-----CCCEECTTCSCTTC---CCCBCCTTCCEEEEE---CSCEEEEEEETTEEE---
T ss_pred CEEEECCCCEEEE--EECCC-C-----cEEEEcccccCCCc---ceeecCCCCEEEEEe---CCCEEEEEEeCCCcc---
Confidence 6999999998654 56643 3 44443221112332 123467899988888 468999999987543
Q ss_pred ceeeEEEeCCC
Q 008090 144 LYGPIIILPKR 154 (578)
Q Consensus 144 l~G~liV~~~~ 154 (578)
|.|.|+|.+.+
T Consensus 84 M~G~I~V~~~p 94 (122)
T 2ux6_A 84 MVGVVQVGDAP 94 (122)
T ss_dssp EEEEEEESSSC
T ss_pred CEEEEEEeCCC
Confidence 99999998743
No 117
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.58 E-value=0.00024 Score=59.08 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=50.9
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEcc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFAD 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 533 (578)
..+.++.|+.|+|+ |.+ ...|.+|++... .|. .. -++-.+.||+...+.| +
T Consensus 33 ~~i~v~~Gd~V~~~--N~d---~~~H~v~~~~~~-------~g~--------------~~-~~~~~~~pG~~~~~tf--~ 83 (105)
T 2ov0_A 33 PELHVKVGDTVTWI--NRE---AMPHNVHFVAGV-------LGE--------------AA-LKGPMMKKEQAYSLTF--T 83 (105)
T ss_dssp SEEEECTTCEEEEE--ECS---SSCBCCEECTTT-------SSS--------------SC-EECCCBCTTEEEEEEE--C
T ss_pred CEEEECCCCEEEEE--ECC---CCCEEEEEcCCC-------CCc--------------cc-ccccccCCCCEEEEEe--C
Confidence 46789999999885 543 368998887521 010 00 1222467888766655 8
Q ss_pred CceeeEEeeechhhhhccceEEEEEe
Q 008090 534 NPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 534 npG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
.||.|.|||++ |. ||.+.+.|+
T Consensus 84 ~~G~y~y~C~~--H~--gM~G~i~V~ 105 (105)
T 2ov0_A 84 EAGTYDYHCTP--HP--FMRGKVVVE 105 (105)
T ss_dssp SCEEEEEECSS--CT--TCEEEEEEC
T ss_pred CCEEEEEEeCC--CC--CCEEEEEEC
Confidence 99999999998 54 999999874
No 118
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=97.14 E-value=0.0011 Score=56.57 Aligned_cols=74 Identities=15% Similarity=0.141 Sum_probs=50.9
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEcc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFAD 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 533 (578)
..+.++.|++|+|++.| ..|-+..+.. .+. . . .+.+.+.||+...+.| +
T Consensus 21 ~~i~V~~GdtV~f~~~~------~~H~v~~~~~----------~~P-~--g----------~~~f~~~pg~t~s~TF--~ 69 (123)
T 3erx_A 21 AFVRAEPGDVINFVPTD------KSHNVEAIKE----------ILP-E--G----------VESFKSKINESYTLTV--T 69 (123)
T ss_dssp SEEEECTTEEEEEEESS------TTCCCEECTT----------SSC-T--T----------CCCCBCCTTCCEEEEE--C
T ss_pred CEEEECCCCEEEEEECC------CCceEEEcCC----------cCC-C--C----------ccceecCCCCEEEEEe--C
Confidence 35789999999999876 2354444321 000 0 0 0112245677666555 8
Q ss_pred CceeeEEeeechhhhhccceEEEEEec
Q 008090 534 NPGVWFMHCHLDVHTSWGLRMAWIVQN 560 (578)
Q Consensus 534 npG~wl~HCHil~H~d~GM~~~~~V~~ 560 (578)
.||.|.|+|- .|...||.+.+.|.+
T Consensus 70 ~pG~y~y~C~--~H~~~GM~G~I~V~~ 94 (123)
T 3erx_A 70 EPGLYGVKCT--PHFGMGMVGLVQVGD 94 (123)
T ss_dssp SCEEEEEECG--GGTTTTCEEEEEESS
T ss_pred CCeEEEEEeC--CCCcCCcEEEEEECC
Confidence 9999999999 899999999999986
No 119
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=97.09 E-value=0.00099 Score=57.29 Aligned_cols=76 Identities=21% Similarity=0.283 Sum_probs=50.5
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEcc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFAD 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 533 (578)
..+.++.|++|+|++.| ..|-+..+.. .+ +. -...+.+.||+...+ .++
T Consensus 23 ~~i~V~~GDtVtf~n~~------~~H~v~~~~~----------~~-P~------------g~~~f~s~pGet~s~--TF~ 71 (127)
T 3tu6_A 23 AVIRAQPGDTVTFVAKD------KGHNSALMKG----------GA-PE------------GAETWKGKINEEITV--TLS 71 (127)
T ss_dssp SEEEECTTCEEEEECSS------SSCCCEECTT----------CS-CT------------TCCCCBCCTTCCCEE--ECC
T ss_pred CEEEECCCCEEEEEECC------CCceEEEccC----------cC-CC------------CccceecCCCCEEEE--EeC
Confidence 36789999999998765 2344443311 00 00 001122346765444 458
Q ss_pred CceeeEEeeechhhhhccceEEEEEecCC
Q 008090 534 NPGVWFMHCHLDVHTSWGLRMAWIVQNGA 562 (578)
Q Consensus 534 npG~wl~HCHil~H~d~GM~~~~~V~~~~ 562 (578)
.||.|.|||- .|...||.+.+.|.++.
T Consensus 72 ~pG~y~y~C~--~H~~~GM~G~I~V~~~~ 98 (127)
T 3tu6_A 72 KPGVYMYQCA--PHVGMGMIGAIVVGEPA 98 (127)
T ss_dssp SCEEEEEECT--TTGGGTCEEEEEESSCT
T ss_pred CCeEEEEEeC--CCCcCCcEEEEEECcCC
Confidence 9999999999 69999999999998754
No 120
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=97.07 E-value=0.0014 Score=55.92 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=51.8
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEcc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFAD 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 533 (578)
..+.++.|++|+|+..+ ..|-+..+.. .+.. -.+.+.+.+|....+.| +
T Consensus 22 ~~i~V~~GDTV~f~n~~------~~Hnv~~~~~----------~~p~-------------g~~~~~~~pg~t~s~TF--~ 70 (124)
T 3ef4_A 22 GFVKVEAGDTVKFVPTD------KSHNAESVRE----------VWPE-------------GVAPVKGGFSKEVVFNA--E 70 (124)
T ss_dssp SEEEECTTCEEEEECSS------SSCCCEECTT----------TSCT-------------TSCCCBCCTTCCEEEEC--C
T ss_pred CEEEECCCCEEEEEECC------CCccEEEeCC----------cCCC-------------CccccccCCCCEEEEEe--C
Confidence 36789999999998543 4565554321 1100 01223345777655555 8
Q ss_pred CceeeEEeeechhhhhccceEEEEEecCC
Q 008090 534 NPGVWFMHCHLDVHTSWGLRMAWIVQNGA 562 (578)
Q Consensus 534 npG~wl~HCHil~H~d~GM~~~~~V~~~~ 562 (578)
.||.|.|||- .|...||.+.+.|.++.
T Consensus 71 ~~G~y~Y~C~--~H~~~GM~G~I~V~~p~ 97 (124)
T 3ef4_A 71 KEGLYVLKCA--PHYGMGMVVLVQVGKPV 97 (124)
T ss_dssp SSEEEEEECT--TTGGGTCEEEEEESSCT
T ss_pred CCeEEEEEcC--CCCcCCCEEEEEECCCC
Confidence 9999999995 89999999999998753
No 121
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=97.03 E-value=0.0038 Score=53.04 Aligned_cols=88 Identities=8% Similarity=0.148 Sum_probs=54.2
Q ss_pred CCCcEEEEec-CCEEEEEEEeCCCCc-----eeEEEe-----------eeeec-cCCCC-CCCCCc--cccccCCCCeEE
Q 008090 61 FPGPSLVARE-GDRVLIKVTNHVSNN-----VTIHWH-----------GVRQV-TSGWA-DGPAYV--TQCPIQTGQSYT 119 (578)
Q Consensus 61 ~pgP~i~v~~-Gd~v~v~l~N~l~~~-----~siH~H-----------G~~~~-~~~~~-DG~~~~--~q~~i~pG~~~~ 119 (578)
|--..|.|++ |++|+|+|+|....+ +++=.- |+..- ...+. .+-+.+ ....|.||++.+
T Consensus 15 F~p~~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~d~~via~t~~l~pGes~~ 94 (125)
T 3fsa_A 15 FNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDS 94 (125)
T ss_dssp BSCSEEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCEECCCBCTTCEEE
T ss_pred EecCEEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCCCCCccceeccceeCCCcEEE
Confidence 3336999986 999999999997542 333221 11100 00111 011111 112479999999
Q ss_pred EEEEEc--CCCCceeeecCcchhcccceeeEEEe
Q 008090 120 YNFTIT--GQRGTLLWHAHISWLRSTLYGPIIIL 151 (578)
Q Consensus 120 y~f~~~--~~~Gt~wYH~H~~~~~~Gl~G~liV~ 151 (578)
..|+.+ ..+|+|.|.|. +.+ ||.|.++|.
T Consensus 95 vtf~~~~l~~~G~y~f~C~--gH~-~M~G~v~V~ 125 (125)
T 3fsa_A 95 VTFDVSKLKEGEQYMFFCA--AHA-AMKGTLTLK 125 (125)
T ss_dssp EEEEGGGC---CCEEEECS--SST-TCEEEEEEC
T ss_pred EEEeCcCcCCCccEEEEcC--CCC-CcEEEEEEC
Confidence 999974 27999999999 334 999999983
No 122
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=96.75 E-value=0.002 Score=52.66 Aligned_cols=81 Identities=19% Similarity=0.319 Sum_probs=53.1
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEcc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFAD 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 533 (578)
..+.++.|++|+|+ |.+ ...|-+.+.... +.. ..+. .....+...+.||....+.| +
T Consensus 18 ~~i~v~~GdtV~~~--n~~---~~~H~v~~~~~~----------~p~-----g~~~-~~~~~~~~~~~~g~~~~~tf--~ 74 (98)
T 1iuz_A 18 SKISVAAGEAIEFV--NNA---GFPHNIVFDEDA----------VPA-----GVDA-DAISYDDYLNSKGETVVRKL--S 74 (98)
T ss_dssp SEEEECTTCEEEEE--ECS---SCCEEEEECTTS----------SCT-----TCCH-HHHCEEEEECSTTCEEEEEC--C
T ss_pred CEEEECCCCEEEEE--ECC---CCCEEEEEeCCC----------Ccc-----cccc-ccccccccccCCCCEEEEEc--C
Confidence 46789999999986 432 256655443310 000 0000 00113446788898777765 8
Q ss_pred CceeeEEeeechhhhhccceEEEEEe
Q 008090 534 NPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 534 npG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
.||.|.|+|-+ |...||.+.+.|+
T Consensus 75 ~~G~y~y~C~~--H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 75 TPGVYGVYCEP--HAGAGMKMTITVQ 98 (98)
T ss_dssp SCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred CCEEEEEEchh--hccCCCEEEEEEC
Confidence 99999999985 9999999999884
No 123
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=96.61 E-value=0.0068 Score=52.64 Aligned_cols=74 Identities=15% Similarity=0.247 Sum_probs=54.5
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCc-ch-hc
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHI-SW-LR 141 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~-~~-~~ 141 (578)
..|+++.|++|++.++|.. . .|++.... -|. ..-+.||+..++.|+. .++|+|+|.|.. .+ ..
T Consensus 60 ~~l~Vp~G~~V~~~vts~D-V-----~Hsf~ip~----~~~----k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~~H 124 (135)
T 2cua_A 60 NPIEVPQGAEIVFKITSPD-V-----IHGFHVEG----TNI----NVEVLPGEVSTVRYTF-KRPGEYRIICNQYCGLGH 124 (135)
T ss_dssp SSEEEETTSEEEEEEEBSS-S-----CEEEEETT----SSC----EEEECBTBCEEEEEEC-CSCEEEEEECCSCCSTTS
T ss_pred CEEEEcCCCEEEEEEEeCC-c-----cceEEecC----CCc----eeEeCCCCcEEEEEEc-CCCEEEEEECcccCCCCc
Confidence 4899999999999999973 3 35555432 121 1346789988999996 889999999954 12 22
Q ss_pred ccceeeEEEeC
Q 008090 142 STLYGPIIILP 152 (578)
Q Consensus 142 ~Gl~G~liV~~ 152 (578)
.+|.|.++|.+
T Consensus 125 ~~M~g~v~V~~ 135 (135)
T 2cua_A 125 QNMFGTIVVKE 135 (135)
T ss_dssp TTCEEEEEEEC
T ss_pred CCCEEEEEEEC
Confidence 68999998863
No 124
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=96.56 E-value=0.0094 Score=49.39 Aligned_cols=73 Identities=19% Similarity=0.171 Sum_probs=49.3
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEcc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFAD 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 533 (578)
..+.++.|+.|+|+ |.+ ...|.+++.... .+. ...++-.+.+|....+.| +
T Consensus 34 ~~i~V~~G~tV~~~--N~d---~~~H~v~~~~~~-------~~~---------------~~~~s~~l~~g~~~~~tf--~ 84 (106)
T 1id2_A 34 PEVTIKAGETVYWV--NGE---VMPHNVAFKKGI-------VGE---------------DAFRGEMMTKDQAYAITF--N 84 (106)
T ss_dssp SEEEECTTCEEEEE--ECS---SSCBCCEECTTT-------SSS---------------SCEECCCBCTTEEEEEEE--C
T ss_pred CEEEECCCCEEEEE--ECC---CCcEEEEEeCCC-------CCc---------------ccccccccCCCCEEEEEe--C
Confidence 36788999999987 533 256666544321 000 012333567888777666 8
Q ss_pred CceeeEEeeechhhhhccceEEEEEe
Q 008090 534 NPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 534 npG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
.||.|.|+|-+ |. ||.+.+.|+
T Consensus 85 ~~G~y~~~C~~--H~--~M~G~I~V~ 106 (106)
T 1id2_A 85 EAGSYDYFCTP--HP--FMRGKVIVE 106 (106)
T ss_dssp SCEEEEEECSS--CT--TCEEEEEEC
T ss_pred CCEEEEEEeCC--CC--CCEEEEEEC
Confidence 99999999987 76 999999874
No 125
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=96.55 E-value=0.0077 Score=51.40 Aligned_cols=37 Identities=16% Similarity=0.343 Sum_probs=30.2
Q ss_pred CCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEecC
Q 008090 521 PAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQNG 561 (578)
Q Consensus 521 pp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~ 561 (578)
.+|.... +.++.||.|.|+|- .|...||.+.+.|.++
T Consensus 59 ~pG~t~~--~tF~~~G~y~y~C~--~H~~~gM~G~I~V~~~ 95 (123)
T 1paz_A 59 KINENYV--LTVTQPGAYLVKCT--PHYAMGMIALIAVGDS 95 (123)
T ss_dssp CTTCCEE--EECCSCEEEEEECT--TTGGGTCEEEEEESSS
T ss_pred CCCCEEE--EEeCCCEEEEEEeC--CcccCCCEEEEEEcCC
Confidence 4676544 45589999999997 5999999999999863
No 126
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=96.52 E-value=0.01 Score=53.28 Aligned_cols=80 Identities=15% Similarity=0.260 Sum_probs=57.8
Q ss_pred CCCCCCcEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCc
Q 008090 58 NGQFPGPSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHI 137 (578)
Q Consensus 58 Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~ 137 (578)
+-++--..|+++.|+.|++.++|. +.. |+...+.. |. +.-+.||+..++.|.+ +++|+|++.|.-
T Consensus 87 ~~~f~Pn~l~VP~G~~Vr~~vTS~-DVi-----Hsf~IP~l----gi----k~da~PG~~n~~~~~~-~kpG~y~g~Cse 151 (168)
T 3s8f_B 87 AFGYQPNPIEVPQGAEIVFKITSP-DVI-----HGFHVEGT----NI----NVEVLPGEVSTVRYTF-KRPGEYRIICNQ 151 (168)
T ss_dssp TTEEESSSEEEETTSEEEEEEECS-SSC-----EEEEETTS----SC----EEEECTTBCEEEEEEC-CSCEEEEEECCS
T ss_pred eceEecCEEEEeCCCeEEEEEecC-Cce-----EEEEECCC----Ce----EEEecCCceeEEEEEe-CCCEEEEEECCc
Confidence 333333589999999999999997 333 55544321 11 1335689999999996 889999999984
Q ss_pred -chhc-ccceeeEEEeC
Q 008090 138 -SWLR-STLYGPIIILP 152 (578)
Q Consensus 138 -~~~~-~Gl~G~liV~~ 152 (578)
.+.. ++|.|-++|++
T Consensus 152 ~CG~~Hs~M~g~V~V~e 168 (168)
T 3s8f_B 152 YCGLGHQNMFGTIVVKE 168 (168)
T ss_dssp CCSTTGGGCEEEEEEEC
T ss_pred CCCCCcCCCEEEEEEeC
Confidence 4443 89999999973
No 127
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=96.39 E-value=0.012 Score=50.81 Aligned_cols=73 Identities=19% Similarity=0.171 Sum_probs=50.1
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEcc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFAD 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 533 (578)
..+.++.|+.|+|+ |.+ ...|-+++.... .+. ..-++-.+.||+...+.| +
T Consensus 60 ~~i~V~~GdtV~~~--N~d---~~~H~v~~~~~~-------~g~---------------~~~~s~~l~pG~t~~~tF--~ 110 (132)
T 3c75_A 60 PEVTIKAGETVYWV--NGE---VMPHNVAFKKGI-------VGE---------------DAFRGEMMTKDQAYAITF--N 110 (132)
T ss_dssp SEEEECTTCEEEEE--ECS---SSCBCCEECTTT-------SSS---------------SCEECCCBCTTEEEEEEE--C
T ss_pred CEEEECCCCEEEEE--ECC---CCceEEEEeCCC-------CCc---------------ccccccccCCCCEEEEEc--C
Confidence 46788999999987 533 356776654311 000 012334567888777666 7
Q ss_pred CceeeEEeeechhhhhccceEEEEEe
Q 008090 534 NPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 534 npG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
.||.|.|||-+ |. ||.+.+.|+
T Consensus 111 ~~G~y~y~C~~--H~--gM~G~I~V~ 132 (132)
T 3c75_A 111 EAGSYDYFCTP--HP--FMRGKVIVE 132 (132)
T ss_dssp SCEEEEEECSS--CT--TCEEEEEEC
T ss_pred CCEEEEEEeCC--Cc--CCEEEEEEC
Confidence 99999999986 76 999999884
No 128
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=96.33 E-value=0.0097 Score=50.78 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=30.8
Q ss_pred eCCCcEEEEEEEccCceeeEEeeechhhhhccceEEEEEecC
Q 008090 520 VPAGGWVAIRFFADNPGVWFMHCHLDVHTSWGLRMAWIVQNG 561 (578)
Q Consensus 520 vpp~g~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~ 561 (578)
+.+|....+ .++.||.|.|+|- .|...||.+.+.|.++
T Consensus 58 ~~pG~t~~~--tF~~~G~y~y~C~--~H~~~gM~G~I~V~~~ 95 (123)
T 1pmy_A 58 TTVGQEAVV--KFDKEGVYGFKCA--PHYMMGMVALVVVGDK 95 (123)
T ss_dssp CCTTSCEEE--ECCSCEEEEEECS--TTTTTTCEEEEEESSC
T ss_pred cCCCCEEEE--EeCCCeEEEEEeC--CccccCCEEEEEEcCC
Confidence 457776544 4589999999997 5999999999999863
No 129
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.10 E-value=0.02 Score=60.94 Aligned_cols=79 Identities=15% Similarity=0.254 Sum_probs=60.7
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEcc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFAD 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 533 (578)
..+.++.|+.|+|++.|.....+..|.|-+.+.... +.+.||....+.|.++
T Consensus 558 ~eI~VP~GdtVrfiLTN~D~veDViHSF~IPslGIK----------------------------~DaiPGrtnsvtFtad 609 (638)
T 3sbq_A 558 QEFTVKQGDEVTVTITNIDQIEDVSHGFVVVNHGVS----------------------------MEISPQQTSSITFVAD 609 (638)
T ss_dssp CEEEEETTCEEEEEEEECCCSTTCCEEEEETTTTEE----------------------------EEECTTCEEEEEEECC
T ss_pred CEEEEecCceeEEEEecCCcCCCceeeeEecCCCce----------------------------eeeCCCCeEEEEEEcC
Confidence 467899999999999995321246777666544321 2567899999999999
Q ss_pred CceeeEEeeechhhh-hccceEEEEEec
Q 008090 534 NPGVWFMHCHLDVHT-SWGLRMAWIVQN 560 (578)
Q Consensus 534 npG~wl~HCHil~H~-d~GM~~~~~V~~ 560 (578)
.||.|.++|...-|. +.+|.+.+.|++
T Consensus 610 kPGvY~y~CSE~CGa~Hs~M~G~ViVEP 637 (638)
T 3sbq_A 610 KPGLHWYYCSWFCHALHMEMVGRMMVEP 637 (638)
T ss_dssp SCEEEEEECCSCCSTTCTTCEEEEEEEC
T ss_pred CCEEEEEECCCcCCCCcccceEEEEEec
Confidence 999999999986664 478999999874
No 130
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=95.87 E-value=0.079 Score=45.43 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=63.6
Q ss_pred eeeEeecCC-CEEEEEEeeCCCCC--CCCCCccccCCceEEEEecCCCCCCC-----CCCCCCCC----CCCCcceeeee
Q 008090 453 TRTVLLPFN-TSVELVMQDTSILG--AESHPLHLHGFNFFVVGLGFGNYDPD-----KDLMNFNL----VDPMERNTIGV 520 (578)
Q Consensus 453 ~~~~~~~~g-~~v~~~l~N~~~~~--~~~HP~HlHG~~F~Vv~~g~g~~~~~-----~~~~~~~~----~~p~~rDTv~v 520 (578)
..-+.++.| +.+.+++.|.+... .+.| .|-+...+. ++.. ......++ .......|..|
T Consensus 17 p~~i~V~~G~~~vtv~~~N~g~~~~~~m~H-------~~vi~~~~~--~~~~~~~~m~~~~~~~~v~~~~~~~~~~t~~l 87 (129)
T 1cuo_A 17 TRSISVPASCAEFTVNFEHKGHMPKTGMGH-------NWVLAKSAD--VGDVAKEGAHAGADNNFVTPGDKRVIAFTPII 87 (129)
T ss_dssp CSEEEEETTCSEEEEEEEECSSSCHHHHCB-------CCEEEEGGG--HHHHHHHHHTTCGGGTTSCTTCTTCSEECCCB
T ss_pred cCeEEEcCCCeEEEEEEEECCCCccccccc-------ceEEecCcc--hhhhHHHhhhccccccccccccccceeeeeEE
Confidence 346789999 99999999965310 1234 455544321 0000 00000010 11123467778
Q ss_pred CCCcEEEEEEEcc---CceeeEEeeechhhhhccceEEEEEe
Q 008090 521 PAGGWVAIRFFAD---NPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 521 pp~g~v~irf~ad---npG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
.||+...+.|.++ .||.|-|.|-+--|.. ||-+.+.|.
T Consensus 88 ~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~ 128 (129)
T 1cuo_A 88 GGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE 128 (129)
T ss_dssp CTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred CCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence 9999999999997 9999999999999988 899999986
No 131
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=95.80 E-value=0.032 Score=50.06 Aligned_cols=95 Identities=8% Similarity=0.053 Sum_probs=62.2
Q ss_pred eEee-cCCCEEEEEEeeCCCC--CCCCCCccccCCceEEEEecCCCCCCC----CCCCCCCC----CCCCcceeeeeCCC
Q 008090 455 TVLL-PFNTSVELVMQDTSIL--GAESHPLHLHGFNFFVVGLGFGNYDPD----KDLMNFNL----VDPMERNTIGVPAG 523 (578)
Q Consensus 455 ~~~~-~~g~~v~~~l~N~~~~--~~~~HP~HlHG~~F~Vv~~g~g~~~~~----~~~~~~~~----~~p~~rDTv~vpp~ 523 (578)
-+.+ +.|+.|.|+|.|.+.. ..+. |.|-+...+. ++.. ......++ ....+..|..|.||
T Consensus 59 ~itV~kaG~~Vtv~~~N~g~~p~~~m~-------Hn~vi~~~~~--~~~v~~~~m~~~~~~~v~~~d~~vl~~t~~l~pG 129 (167)
T 3ay2_A 59 DIQVSKACKEFTITLKHTGTQPKASMG-------HNLVIAKAED--MDGVFKDGVGAADTDYVKPDDARVVAHTKLIGGG 129 (167)
T ss_dssp EEEEETTCSSEEEEEEECSCSCHHHHC-------BCCEEEEGGG--HHHHHHHHGGGGGGTTSCTTCTTEEEECCCBCTT
T ss_pred eEEEecCCCEEEEEEEECCCCcccccc-------ceEEeccCcc--hhhhHHHhhhccccccccccccchhccceeeCCC
Confidence 4678 8999999999996531 0112 3454443220 0000 00000000 11124567788999
Q ss_pred cEEEEEEEcc--CceeeEEeeechhhhhccceEEEEEe
Q 008090 524 GWVAIRFFAD--NPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 524 g~v~irf~ad--npG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
+...|.|.++ .||.|-|+|-+--|.. ||-+.+.|.
T Consensus 130 et~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~ 166 (167)
T 3ay2_A 130 EESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV 166 (167)
T ss_dssp CEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred CEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence 9999999988 8999999999999988 999999986
No 132
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=95.39 E-value=0.077 Score=45.88 Aligned_cols=71 Identities=18% Similarity=0.319 Sum_probs=52.3
Q ss_pred eEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccC
Q 008090 455 TVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADN 534 (578)
Q Consensus 455 ~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 534 (578)
.+.++.|+.|+|++.|.+ ..| .|.+-+.+ --+.+.||....+.|.++.
T Consensus 61 ~l~Vp~G~~V~~~vts~D----V~H-------sf~ip~~~---------------------~k~d~~PG~~~~~~~~~~~ 108 (135)
T 2cua_A 61 PIEVPQGAEIVFKITSPD----VIH-------GFHVEGTN---------------------INVEVLPGEVSTVRYTFKR 108 (135)
T ss_dssp SEEEETTSEEEEEEEBSS----SCE-------EEEETTSS---------------------CEEEECBTBCEEEEEECCS
T ss_pred EEEEcCCCEEEEEEEeCC----ccc-------eEEecCCC---------------------ceeEeCCCCcEEEEEEcCC
Confidence 357899999999999843 333 35552211 0144567887889999999
Q ss_pred ceeeEEeeec---hhhhhccceEEEEEe
Q 008090 535 PGVWFMHCHL---DVHTSWGLRMAWIVQ 559 (578)
Q Consensus 535 pG~wl~HCHi---l~H~d~GM~~~~~V~ 559 (578)
||.|.++|.. ..| .+|-+.+.|.
T Consensus 109 ~G~y~~~C~e~CG~~H--~~M~g~v~V~ 134 (135)
T 2cua_A 109 PGEYRIICNQYCGLGH--QNMFGTIVVK 134 (135)
T ss_dssp CEEEEEECCSCCSTTS--TTCEEEEEEE
T ss_pred CEEEEEECcccCCCCc--CCCEEEEEEE
Confidence 9999999987 556 5999999886
No 133
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=95.10 E-value=0.058 Score=45.79 Aligned_cols=73 Identities=15% Similarity=0.228 Sum_probs=46.6
Q ss_pred eeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEcc
Q 008090 454 RTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFAD 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 533 (578)
..+.++.|++|.|+..+ ..|-+++.. + .+... ...+.+.+|....+.| +
T Consensus 21 ~~i~V~~GdtV~f~n~d------~~H~v~~~~--------~--~~p~~-------------~~~~~~~~g~t~~~tF--~ 69 (122)
T 2ux6_A 21 ASLKVAPGDTVTFIPTD------KGHNVETIK--------G--MIPDG-------------AEAFKSKINENYKVTF--T 69 (122)
T ss_dssp SEEEECTTEEEEEEESS------SSCCCEECT--------T--CSCTT-------------CCCCBCCTTCCEEEEE--C
T ss_pred CEEEECCCCEEEEEECC------CCcEEEEcc--------c--ccCCC-------------cceeecCCCCEEEEEe--C
Confidence 36788999999987432 245555443 1 01000 0011235677655555 8
Q ss_pred CceeeEEeeechhhhhccceEEEEEecC
Q 008090 534 NPGVWFMHCHLDVHTSWGLRMAWIVQNG 561 (578)
Q Consensus 534 npG~wl~HCHil~H~d~GM~~~~~V~~~ 561 (578)
.||.|.|+|-+ |.. |.+.+.|.++
T Consensus 70 ~~G~y~y~C~~--H~~--M~G~I~V~~~ 93 (122)
T 2ux6_A 70 APGVYGVKCTP--HPF--MVGVVQVGDA 93 (122)
T ss_dssp SCEEEEEEETT--EEE--EEEEEEESSS
T ss_pred CCEEEEEEeCC--Ccc--CEEEEEEeCC
Confidence 99999999976 666 9999999863
No 134
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=94.67 E-value=0.22 Score=42.62 Aligned_cols=96 Identities=10% Similarity=0.098 Sum_probs=61.1
Q ss_pred eeEee-cCCCEEEEEEeeCCCC--CCCCCCccccCCceEEEEecCCCCCCC-----CCCCCCCC---CC-CCcceeeeeC
Q 008090 454 RTVLL-PFNTSVELVMQDTSIL--GAESHPLHLHGFNFFVVGLGFGNYDPD-----KDLMNFNL---VD-PMERNTIGVP 521 (578)
Q Consensus 454 ~~~~~-~~g~~v~~~l~N~~~~--~~~~HP~HlHG~~F~Vv~~g~g~~~~~-----~~~~~~~~---~~-p~~rDTv~vp 521 (578)
.-+.+ +.|+.|.+++.|.+.. ..+.| .|.+...+. ++.. ......++ .+ .....|..|.
T Consensus 18 ~~i~V~k~G~~vtv~~~N~g~~p~~~m~H-------~~vi~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~ 88 (129)
T 2ccw_A 18 KEIVVDKSCKQFTMHLKHVGKMAKVAMGH-------NLVLTKDAD--KQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIG 88 (129)
T ss_dssp SEEEECTTCSEEEEEEEECSCCCHHHHCB-------CCEEEEGGG--HHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBC
T ss_pred ceEEEecCCCEEEEEEEECCCcccccCcc-------eEEEcCccc--hhhhHHHhhhhcccccccccccccceeeeeEEC
Confidence 35678 8899999999996531 01124 454443220 0000 00000011 01 1234566789
Q ss_pred CCcEEEEEEEcc--Ccee-eEEeeechhhhhccceEEEEEe
Q 008090 522 AGGWVAIRFFAD--NPGV-WFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 522 p~g~v~irf~ad--npG~-wl~HCHil~H~d~GM~~~~~V~ 559 (578)
||+...+.|.++ .+|. |-|.|-+--|.. ||-+.+.|.
T Consensus 89 pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 89 GGESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp TTCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred CCCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 999999999998 7865 999999999988 899999985
No 135
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=94.64 E-value=0.27 Score=41.60 Aligned_cols=96 Identities=10% Similarity=0.161 Sum_probs=61.4
Q ss_pred eeeEeecC-CCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCC-----CCCCCCCC----CCCCcceeeeeCC
Q 008090 453 TRTVLLPF-NTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPD-----KDLMNFNL----VDPMERNTIGVPA 522 (578)
Q Consensus 453 ~~~~~~~~-g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~-----~~~~~~~~----~~p~~rDTv~vpp 522 (578)
..-+.++. |+.|+++|.|.+.+ |--.=||.|-+...+. .+.. ......++ +......|..|.|
T Consensus 17 p~~i~V~~~Ge~V~~~l~N~G~~-----p~~~M~Hn~Vl~~~~~--~~~~~~~~m~~~~~~~y~~~~d~~via~t~~l~p 89 (125)
T 3fsa_A 17 TNAITVDKSCKQFTVNLSHPGNL-----PKNVMGHNWVLSTAAD--MQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGS 89 (125)
T ss_dssp CSEEEECTTCSEEEEEEECCSSC-----CHHHHCBCCEEEEHHH--HHHHHHHHHHHCGGGTTSCTTCTTCCEECCCBCT
T ss_pred cCEEEEecCCCEEEEEEEECCcc-----cccccCceEEEcccch--HHHHHHHHHhcChhhccCCCCCccceeccceeCC
Confidence 44577875 99999999997631 1112245666653210 0000 00000111 2235667888999
Q ss_pred CcEEEEEEEcc---CceeeEEeeechhhhhccceEEEEEe
Q 008090 523 GGWVAIRFFAD---NPGVWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 523 ~g~v~irf~ad---npG~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
|+...|.|.+. .+|.|-|-|- -|. ||-+.+.|.
T Consensus 90 Ges~~vtf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 90 GEKDSVTFDVSKLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp TCEEEEEEEGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred CcEEEEEEeCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 99999999997 8999999999 888 999999873
No 136
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=93.87 E-value=0.37 Score=41.12 Aligned_cols=98 Identities=14% Similarity=0.132 Sum_probs=61.5
Q ss_pred eeEee-cCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCC-----CCCCCCCC---CC-CCcceeeeeCCC
Q 008090 454 RTVLL-PFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPD-----KDLMNFNL---VD-PMERNTIGVPAG 523 (578)
Q Consensus 454 ~~~~~-~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~-----~~~~~~~~---~~-p~~rDTv~vpp~ 523 (578)
.-+.+ +.|+.+.+++.|.+. .+ ---=+|.|-+...+ ..+.. ......++ .+ .....|..|.||
T Consensus 17 ~~i~V~k~G~~vtv~~~N~g~---~p--~~~m~Hn~vi~~~~--~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~pG 89 (128)
T 2iaa_C 17 KSIVVDKTCKEFTINLKHTGK---LP--KAAMGHNVVVSKKS--DESAVATDGMKAGLNNDYVKAGDERVIAHTSVIGGG 89 (128)
T ss_dssp SEEEECTTCSEEEEEEEECSC---SC--HHHHCBCCEEEETT--HHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTT
T ss_pred CEEEEecCCcEEEEEEEECCC---Cc--ccCCCceEEEcccc--chhhHHHhhhhccccccccccccchhhccceeeCCC
Confidence 35678 889999999999653 21 00012344443321 00000 00000011 11 123456678999
Q ss_pred cEEEEEEEcc--Cce-eeEEeeechhhhhccceEEEEEe
Q 008090 524 GWVAIRFFAD--NPG-VWFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 524 g~v~irf~ad--npG-~wl~HCHil~H~d~GM~~~~~V~ 559 (578)
+...+.|.+. .+| .|-|.|-+--|.. ||-+.+.|.
T Consensus 90 es~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 90 ETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp CEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred CEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 9999999998 899 5999999999998 999999985
No 137
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=93.64 E-value=0.43 Score=40.71 Aligned_cols=96 Identities=14% Similarity=0.157 Sum_probs=61.0
Q ss_pred eeEee-cCCCEEEEEEeeCCCCC--CCCCCccccCCceEEEEecCCCCCC-----CCCCCCCCC---CC-CCcceeeeeC
Q 008090 454 RTVLL-PFNTSVELVMQDTSILG--AESHPLHLHGFNFFVVGLGFGNYDP-----DKDLMNFNL---VD-PMERNTIGVP 521 (578)
Q Consensus 454 ~~~~~-~~g~~v~~~l~N~~~~~--~~~HP~HlHG~~F~Vv~~g~g~~~~-----~~~~~~~~~---~~-p~~rDTv~vp 521 (578)
.-+.+ +.|+.|.+++.|.+... .+.| .|.+...+. .+. -......++ .+ .....|-.|.
T Consensus 18 ~~i~V~k~G~~vtv~~~N~g~~p~~~m~H-------~~vi~~~~~--~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~ 88 (128)
T 1nwp_A 18 KDIAIDKSCKTFTVELTHSGSLPKNVMGH-------NLVISKEAD--MQPIATDGLSAGIDKQYLKDGDARVIAHTKVIG 88 (128)
T ss_dssp SEEEECTTCSEEEEEEEECSSCCHHHHCB-------CCEEEEGGG--HHHHHHHHTTTCGGGTTSCTTCTTEEEECCCBC
T ss_pred CEEEEecCCCEEEEEEEECCCCcccCCCc-------eEEEccccc--hhhHHHHHhhccccccccccccchhheeeeeeC
Confidence 45788 89999999999965310 1124 444433210 000 000000011 11 1234566799
Q ss_pred CCcEEEEEEEcc--Ccee-eEEeeechhhhhccceEEEEEe
Q 008090 522 AGGWVAIRFFAD--NPGV-WFMHCHLDVHTSWGLRMAWIVQ 559 (578)
Q Consensus 522 p~g~v~irf~ad--npG~-wl~HCHil~H~d~GM~~~~~V~ 559 (578)
||+...+.|.+. .+|. |-|.|-+--|.. ||-+.+.|.
T Consensus 89 pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 89 AGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp TTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred CCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 999999999998 7876 999999999998 899999873
No 138
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=92.88 E-value=0.53 Score=42.10 Aligned_cols=73 Identities=15% Similarity=0.240 Sum_probs=54.3
Q ss_pred eEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEEccC
Q 008090 455 TVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFFADN 534 (578)
Q Consensus 455 ~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 534 (578)
.+.++.|+.|++.+.|.+ ..|.| +|-+.+ =-+.+-||..-.+.|.++.
T Consensus 94 ~l~VP~G~~Vr~~vTS~D----ViHsf-------~IP~lg---------------------ik~da~PG~~n~~~~~~~k 141 (168)
T 3s8f_B 94 PIEVPQGAEIVFKITSPD----VIHGF-------HVEGTN---------------------INVEVLPGEVSTVRYTFKR 141 (168)
T ss_dssp SEEEETTSEEEEEEECSS----SCEEE-------EETTSS---------------------CEEEECTTBCEEEEEECCS
T ss_pred EEEEeCCCeEEEEEecCC----ceEEE-------EECCCC---------------------eEEEecCCceeEEEEEeCC
Confidence 356899999999999853 45554 442211 0134557888889999999
Q ss_pred ceeeEEeeec-hhhhhccceEEEEEe
Q 008090 535 PGVWFMHCHL-DVHTSWGLRMAWIVQ 559 (578)
Q Consensus 535 pG~wl~HCHi-l~H~d~GM~~~~~V~ 559 (578)
||.|.+.|.. --+.+.+|.+.+.|+
T Consensus 142 pG~y~g~Cse~CG~~Hs~M~g~V~V~ 167 (168)
T 3s8f_B 142 PGEYRIICNQYCGLGHQNMFGTIVVK 167 (168)
T ss_dssp CEEEEEECCSCCSTTGGGCEEEEEEE
T ss_pred CEEEEEECCcCCCCCcCCCEEEEEEe
Confidence 9999999985 446778999999886
No 139
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=89.36 E-value=2.8 Score=35.08 Aligned_cols=74 Identities=12% Similarity=0.061 Sum_probs=51.6
Q ss_pred CCcE--EEEEEEecCCCCeEEEEEc-CceEEEEee--cCCccc--------ceEecEEEeCCCceEEEEEEcCCCCCCCc
Q 008090 223 PGKT--YLLRLINAALNDELFFSIA-NHTLTVVEA--DAVYVK--------PFDTDKLLITPGQTANVLLRTKPYFPNAT 289 (578)
Q Consensus 223 ~G~~--~rlRliN~~~~~~~~~~l~-gh~~~via~--DG~~v~--------P~~~d~v~l~pgeR~dv~v~~~~~~~~g~ 289 (578)
.|+. ..|.+.|.+. ....+.+. |+++.++-. +|..+- .+......|.|||...+-...++....|.
T Consensus 16 ~g~~v~~~ltv~N~s~-~~v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQa~~~~tl~pGE~~~f~~~w~~~~~pG~ 94 (120)
T 3isy_A 16 EPEQIKFNMSLKNQSE-RAIEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQAFQNLTLESGETYDFSDVWKEVPEPGT 94 (120)
T ss_dssp CSSCEEEEEEEEECSS-SCEEEEESSSCCEEEEEECTTCCEEEETTTTCCCCCCCEEEEECTTCEEEEEEEESSCCCSEE
T ss_pred CCCeEEEEEEEEcCCC-CcEEEEeCCCCEEEEEEECCCCCEEEEccccchhhhhhceEEECCCCEEEEEEEeCCCCCCcc
Confidence 4444 4677899985 44457775 776555544 476551 34567899999999999999985332399
Q ss_pred eEEEEeec
Q 008090 290 FFMQARPY 297 (578)
Q Consensus 290 y~l~~~~~ 297 (578)
|.+++...
T Consensus 95 Ytl~a~l~ 102 (120)
T 3isy_A 95 YEVKVTFK 102 (120)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEE
Confidence 99998743
No 140
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=77.80 E-value=15 Score=30.55 Aligned_cols=63 Identities=10% Similarity=0.185 Sum_probs=42.9
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCC---CccccccCCCCeEEEEEEEcC--CCCceeeecCc
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPA---YVTQCPIQTGQSYTYNFTITG--QRGTLLWHAHI 137 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~---~~~q~~i~pG~~~~y~f~~~~--~~Gt~wYH~H~ 137 (578)
=+|+...|.+..+.|.+..++ .+ -.|+||.. .+....|.||++.+|+...++ .+|+|..+.-.
T Consensus 34 v~l~f~Sgq~~Df~v~d~~G~---------~V--wrwS~~~~FtQa~~~~tl~pGE~~~f~~~w~~~~~pG~Ytl~a~l 101 (120)
T 3isy_A 34 IEFQFSTGQKFELVVYDSEHK---------ER--YRYSKEKMFTQAFQNLTLESGETYDFSDVWKEVPEPGTYEVKVTF 101 (120)
T ss_dssp EEEEESSSCCEEEEEECTTCC---------EE--EETTTTCCCCCCCEEEEECTTCEEEEEEEESSCCCSEEEEEEEEE
T ss_pred EEEEeCCCCEEEEEEECCCCC---------EE--EEccccchhhhhhceEEECCCCEEEEEEEeCCCCCCccEEEEEEE
Confidence 477777888878877775321 11 13577743 234567999999999999963 58999876443
No 141
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=69.98 E-value=11 Score=34.55 Aligned_cols=62 Identities=8% Similarity=0.062 Sum_probs=46.1
Q ss_pred EEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeec
Q 008090 218 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPY 297 (578)
Q Consensus 218 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 297 (578)
.+.++.|+.+||+|.+.. -.+.|.|.... -.+...||..-.+.+.++++ |.|...|.-+
T Consensus 42 ~l~lP~g~~V~~~lTS~D--ViHSF~IP~lg----------------vK~daiPGr~n~l~~~~~~p---G~y~g~CsE~ 100 (205)
T 1cyx_A 42 EIAFPANTPVYFKVTSNS--VMHSFFIPRLG----------------SQIYAMAGMQTRLHLIANEP---GTYDGICAEI 100 (205)
T ss_dssp EEEEETTSCEEEEEEESS--SCEEEEEGGGT----------------EEEEECTTCCEEEEECCSSS---EEEEEEECSC
T ss_pred eEEEeCCCEEEEEEecCC--ceeeEEecccC----------------cEEEecCCceEEEEEEeCCC---eEEEEEcccc
Confidence 589999999999998764 34455654332 23456688888888888887 9999999866
Q ss_pred CCC
Q 008090 298 FSG 300 (578)
Q Consensus 298 ~~~ 300 (578)
++.
T Consensus 101 CG~ 103 (205)
T 1cyx_A 101 CGP 103 (205)
T ss_dssp CST
T ss_pred ccc
Confidence 554
No 142
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=69.89 E-value=10 Score=34.73 Aligned_cols=73 Identities=16% Similarity=0.020 Sum_probs=52.7
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCc-chhc-
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHI-SWLR- 141 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~-~~~~- 141 (578)
..|++..|+.|++.|++.. .. ||..++.- | .+.-+-||..-...|.+ +.+|+|+..|.- .+..
T Consensus 41 n~l~lP~g~~V~~~lTS~D-Vi-----HSF~IP~l----g----vK~daiPGr~n~l~~~~-~~pG~y~g~CsE~CG~~H 105 (205)
T 1cyx_A 41 NEIAFPANTPVYFKVTSNS-VM-----HSFFIPRL----G----SQIYAMAGMQTRLHLIA-NEPGTYDGICAEICGPGH 105 (205)
T ss_dssp SEEEEETTSCEEEEEEESS-SC-----EEEEEGGG----T----EEEEECTTCCEEEEECC-SSSEEEEEEECSCCSTTS
T ss_pred ceEEEeCCCEEEEEEecCC-ce-----eeEEeccc----C----cEEEecCCceEEEEEEe-CCCeEEEEEcccccccch
Confidence 4799999999999999973 22 55544421 1 12335679988889986 889999999874 3333
Q ss_pred ccceeeEEEe
Q 008090 142 STLYGPIIIL 151 (578)
Q Consensus 142 ~Gl~G~liV~ 151 (578)
+.|.+.++|.
T Consensus 106 s~M~~~v~vv 115 (205)
T 1cyx_A 106 SGMKFKAIAT 115 (205)
T ss_dssp TTCCEEEEEE
T ss_pred hhceEEEEEE
Confidence 7788888887
No 143
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=62.10 E-value=74 Score=29.55 Aligned_cols=74 Identities=12% Similarity=0.013 Sum_probs=49.9
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCC-CCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCc-chhc
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSG-WADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHI-SWLR 141 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~-~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~-~~~~ 141 (578)
..+.+..|+.|++.++..+ .- |+..++.-. -+| .-||..-...|.+ +++|+|+..|.- .|..
T Consensus 140 n~lvlP~~~~Vr~~vtS~D-Vi-----Hsf~vP~lg~K~D---------aiPGr~n~~~~~~-~~~G~y~g~Cse~CG~~ 203 (227)
T 1v54_B 140 NRVVLPMEMTIRMLVSSED-VL-----HSWAVPSLGLKTD---------AIPGRLNQTTLMS-SRPGLYYGQCSEICGSN 203 (227)
T ss_dssp SCEEEETTSCEEEEEEESS-SC-----EEEEEGGGTEEEE---------ECTTCCEEEEECC-SSCEEEEECCCSCCSTT
T ss_pred ceEEEecCCEEEEEEEeCc-cc-----ceeeecccCcEEE---------ecCCceEEEEEec-CCcEEEEEEehhhcccc
Confidence 5799999999999999864 33 444333210 023 3458888888885 889999998874 3322
Q ss_pred -ccceeeEEEeCC
Q 008090 142 -STLYGPIIILPK 153 (578)
Q Consensus 142 -~Gl~G~liV~~~ 153 (578)
+.|.+.+.+.++
T Consensus 204 Hs~M~~~v~vv~~ 216 (227)
T 1v54_B 204 HSFMPIVLELVPL 216 (227)
T ss_dssp GGGCCEEEEEECH
T ss_pred cccCeEEEEEEcH
Confidence 567777666543
No 144
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=56.99 E-value=22 Score=34.67 Aligned_cols=78 Identities=15% Similarity=0.211 Sum_probs=55.8
Q ss_pred CeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEE
Q 008090 452 GTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFF 531 (578)
Q Consensus 452 ~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ 531 (578)
..+.+.++.|+.|++.+.+.+ ..|. |+|-+.+ --+.+-||-...+.|.
T Consensus 187 vdN~lvlP~g~~V~~~ltS~D----ViHs-------f~iP~lg---------------------~k~daiPG~~n~~~~~ 234 (298)
T 3hb3_B 187 TDNPVVVPVGKKVLVQVTATD----VIHA-------WTIPAFA---------------------VKQDAVPGRIAQLWFS 234 (298)
T ss_dssp BSSCEEEESSSEEEEEEEESS----SCEE-------EEEGGGT---------------------EEEEECTTCCEEEEEE
T ss_pred ccceEEEEcCCEEEEEEEeCC----ccce-------eeEcccC---------------------ceEEecCCceEEEEEE
Confidence 345678999999999999854 4554 5552221 1122346777889999
Q ss_pred ccCceeeEEeeechh-hhhccceEEEEEecC
Q 008090 532 ADNPGVWFMHCHLDV-HTSWGLRMAWIVQNG 561 (578)
Q Consensus 532 adnpG~wl~HCHil~-H~d~GM~~~~~V~~~ 561 (578)
++.||.|...|.-.- --+..|-..++|.++
T Consensus 235 ~~~~G~y~g~CsE~CG~~Hs~M~~~v~vvs~ 265 (298)
T 3hb3_B 235 VDQEGVYFGQCSELCGINHAYMPIVVKAVSQ 265 (298)
T ss_dssp CSSSEEEEECCCSCCSTTTTSCCEEEEEECH
T ss_pred eCCCEEEEEEcccccCcCccCCeeEEEEEcH
Confidence 999999999998554 456788888888754
No 145
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=55.90 E-value=32 Score=32.85 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=52.4
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCc-chhc-
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHI-SWLR- 141 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~-~~~~- 141 (578)
..|++..|+.|++.+++.+ .. ||..++.- | + +.-+-||..-...|.+ +++|+|+..|.- .+..
T Consensus 171 n~l~lP~g~~v~~~~tS~D-Vi-----Hsf~ip~l----~---~-k~da~PG~~n~~~~~~-~~~G~y~g~Cse~CG~~H 235 (262)
T 2gsm_B 171 TAMVVPVNKTVVVQVTGAD-VI-----HSWTVPAF----G---V-KQDAVPGRLAQLWFRA-EREGIFFGQCSELCGISH 235 (262)
T ss_dssp SCEEEETTSEEEEEEEESS-SC-----EEEEEGGG----T---E-EEEECBTCCEEEEEEC-CSCEEEEECCCSCCSTTG
T ss_pred ceEEEecCCEEEEEEEECc-cc-----ceeeeccc----C---c-eEEecCCceeEEEEec-CCcEEEEEEChHhcccCc
Confidence 4699999999999999873 32 44444321 1 1 1224578888888986 899999999874 3333
Q ss_pred ccceeeEEEeCC
Q 008090 142 STLYGPIIILPK 153 (578)
Q Consensus 142 ~Gl~G~liV~~~ 153 (578)
+.|.+.+.|.++
T Consensus 236 ~~M~~~v~vv~~ 247 (262)
T 2gsm_B 236 AYMPITVKVVSE 247 (262)
T ss_dssp GGCCEEEEEECH
T ss_pred ccCeEEEEEEcH
Confidence 678887777654
No 146
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=54.75 E-value=35 Score=33.24 Aligned_cols=76 Identities=14% Similarity=0.136 Sum_probs=52.8
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCc-chhc-
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHI-SWLR- 141 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~-~~~~- 141 (578)
..|++..|+.|++.+++.+ .. |+..++.- | .+.-.-||..-+..|.+ +++|+|+..|.- .+..
T Consensus 189 N~lvlP~g~~V~~~ltS~D-Vi-----Hsf~iP~l----g----~k~daiPG~~n~~~~~~-~~~G~y~g~CsE~CG~~H 253 (298)
T 3hb3_B 189 NPVVVPVGKKVLVQVTATD-VI-----HAWTIPAF----A----VKQDAVPGRIAQLWFSV-DQEGVYFGQCSELCGINH 253 (298)
T ss_dssp SCEEEESSSEEEEEEEESS-SC-----EEEEEGGG----T----EEEEECTTCCEEEEEEC-SSSEEEEECCCSCCSTTT
T ss_pred ceEEEEcCCEEEEEEEeCC-cc-----ceeeEccc----C----ceEEecCCceEEEEEEe-CCCEEEEEEcccccCcCc
Confidence 5799999999999999964 22 44443321 1 01224578888888996 889999999884 3333
Q ss_pred ccceeeEEEeCCC
Q 008090 142 STLYGPIIILPKR 154 (578)
Q Consensus 142 ~Gl~G~liV~~~~ 154 (578)
+.|.+.+.|.+++
T Consensus 254 s~M~~~v~vvs~~ 266 (298)
T 3hb3_B 254 AYMPIVVKAVSQE 266 (298)
T ss_dssp TSCCEEEEEECHH
T ss_pred cCCeeEEEEEcHH
Confidence 6787787777543
No 147
>3vpj_E TSE1-specific immunity protein; hydrolase-hydrolase inhibitor complex; 2.50A {Pseudomonas aeruginosa}
Probab=52.81 E-value=7 Score=32.28 Aligned_cols=53 Identities=25% Similarity=0.295 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhccccccceeEEEE-EEEEEEeeecCceeeeEEEECCCCCCcEEEEecCCEEEEEEEeCCC
Q 008090 14 VLLLGLCFLALLPEFAAGITRHYT-FNIKYHNVTRLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTNHVS 83 (578)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~ 83 (578)
++|..++++++++-.|.+++..|+ |+|.+ |+-.|-+---+.+.|+|-+.|..+
T Consensus 22 kllagsfaalflslsaqaadctftqleivp-----------------qfgspnmfggedehvrvmfsnedp 75 (192)
T 3vpj_E 22 KLLAGSFAALFLSLSAQAADCTFTQLEIVP-----------------QFGSPNMFGGEDEHVRVMFSNEDP 75 (192)
T ss_dssp -------------------CCCEEECCCEE-----------------CTTSTTEEEEECSSEEEEEECCCS
T ss_pred hhhhhhHHHHHHhhhhhhcCceeeeEEEee-----------------ccCCCcccCCCcceEEEEeccCCC
Confidence 578888888888888877776553 22211 444577777788899999999853
No 148
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=48.57 E-value=34 Score=32.67 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=45.9
Q ss_pred EEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeec
Q 008090 218 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPY 297 (578)
Q Consensus 218 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 297 (578)
.+.++.|+.+||++.+.. -.+.|.+..... .+..-||..-.+.+.++++ |.|...|.-+
T Consensus 172 ~l~lP~g~~v~~~~tS~D--ViHsf~ip~l~~----------------k~da~PG~~n~~~~~~~~~---G~y~g~Cse~ 230 (262)
T 2gsm_B 172 AMVVPVNKTVVVQVTGAD--VIHSWTVPAFGV----------------KQDAVPGRLAQLWFRAERE---GIFFGQCSEL 230 (262)
T ss_dssp CEEEETTSEEEEEEEESS--SCEEEEEGGGTE----------------EEEECBTCCEEEEEECCSC---EEEEECCCSC
T ss_pred eEEEecCCEEEEEEEECc--ccceeeecccCc----------------eEEecCCceeEEEEecCCc---EEEEEEChHh
Confidence 489999999999998653 455556543322 2346688888888888888 9999999866
Q ss_pred CCC
Q 008090 298 FSG 300 (578)
Q Consensus 298 ~~~ 300 (578)
++.
T Consensus 231 CG~ 233 (262)
T 2gsm_B 231 CGI 233 (262)
T ss_dssp CST
T ss_pred ccc
Confidence 554
No 149
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=48.14 E-value=46 Score=27.24 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=32.0
Q ss_pred EEEEEEEecCCCC-eEEEEEcCc-eEEEEeecCCcccceEecEEEeCCCceEEEEEEcC
Q 008090 226 TYLLRLINAALND-ELFFSIANH-TLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTK 282 (578)
Q Consensus 226 ~~rlRliN~~~~~-~~~~~l~gh-~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~ 282 (578)
.|+|+|+|.+... .+.+.+.|. .+.++ | +. .+.+.||+..++-|...
T Consensus 34 ~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~---g----~~---~i~v~~g~~~~~~v~v~ 82 (118)
T 2r39_A 34 TYTLKVINKTQQVQEYNLDVKGLNDVSWY---G----KQ---TIQVEPGEVLNLPMSLG 82 (118)
T ss_dssp EEEEEEEECSSSCEEEEEEEESCSSCEEE---S----CC---EEEECTTCEEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEeCCcccEEe---C----CC---cEEECCCCEEEEEEEEE
Confidence 5999999999665 566777663 23332 1 11 49999999877766553
No 150
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=47.84 E-value=21 Score=29.99 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=26.7
Q ss_pred EEEEEeCCCCc---eeEEEeeeeeccCC---CCCCCCCccccccCCCCeEEEEEE
Q 008090 75 LIKVTNHVSNN---VTIHWHGVRQVTSG---WADGPAYVTQCPIQTGQSYTYNFT 123 (578)
Q Consensus 75 ~v~l~N~l~~~---~siH~HG~~~~~~~---~~DG~~~~~q~~i~pG~~~~y~f~ 123 (578)
+|++.|....+ .+-||.=.+..+.- ..+||-| .|.-|.||++|+|.=-
T Consensus 34 ~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVG-~qP~L~PGe~f~YtSg 87 (127)
T 2f1e_A 34 SIRIQNAGAVPARLVARHWQITDGNGRTEQVDGEGVVG-EQPWLRPGEAFHYTSG 87 (127)
T ss_dssp EEEEEECSSSCEEEEEEEEEEEETTSCEEEEEESSBTT-BCCEECTTCEEEEEEE
T ss_pred EEEEEeCCCCCEEEEeceEEEEeCCCCEEEEECCCeec-CCCcCCCCCceEEeCC
Confidence 56667766543 45677644322110 0355533 3566899998877633
No 151
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=47.27 E-value=33 Score=28.81 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=37.1
Q ss_pred cEEEEecCCEEEEEEE---eCCCCceeEEEe----eeeecc-CCCCCCCCCccccccCCCCeEEEEEEEc
Q 008090 64 PSLVAREGDRVLIKVT---NHVSNNVTIHWH----GVRQVT-SGWADGPAYVTQCPIQTGQSYTYNFTIT 125 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~---N~l~~~~siH~H----G~~~~~-~~~~DG~~~~~q~~i~pG~~~~y~f~~~ 125 (578)
+.=.++.|..+.|.+. |..........| |+..+. ....|+-.....|||.+|+.++|.+.++
T Consensus 26 ~PC~l~rG~~~~i~i~f~~~~~~~~~~~~v~~~~~gv~vp~~~~~~daC~~g~~CPl~~G~~~~y~~~lp 95 (130)
T 1nep_A 26 QPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVMGIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLP 95 (130)
T ss_dssp SSEEEETTCEEEEEEEEEESSCBSCCEEEEEEEETTEEEECCCSCCBGGGTTCCSSBCTTCEEEEEEEEE
T ss_pred CCCEEEcCCeEEEEEEEEcccccceEEEEEEEEECCEEeeccCCCCCcccCCCcCcccCCcEEEEEEEeE
Confidence 5566788888877776 222222223333 444431 1214554223579999999999998875
No 152
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=45.86 E-value=21 Score=30.00 Aligned_cols=48 Identities=25% Similarity=0.296 Sum_probs=26.1
Q ss_pred EEEEEeCCCCc---eeEEEeeeeeccCC---CCCCCCCccccccCCCCeEEEEEE
Q 008090 75 LIKVTNHVSNN---VTIHWHGVRQVTSG---WADGPAYVTQCPIQTGQSYTYNFT 123 (578)
Q Consensus 75 ~v~l~N~l~~~---~siH~HG~~~~~~~---~~DG~~~~~q~~i~pG~~~~y~f~ 123 (578)
+|+++|....+ .+-||.=.+..+.- ..+||-| .|.-|.||++|+|.=-
T Consensus 33 ~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVG-~qP~L~PGe~f~YtSg 86 (126)
T 1xvs_A 33 LITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVG-EQPRIKANDEYTYSSG 86 (126)
T ss_dssp EEEEEECSSSCEEEEEEEEEEEETTCCEEEEEEESBTT-BCCEECTTCEEEEEEE
T ss_pred EEEEEECCCCCEEEEecEEEEEeCCCCEEEEECCceEc-CCCcCCCCCceEEeCC
Confidence 56666766543 45677643321110 0345433 3566899998777643
No 153
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=45.00 E-value=33 Score=33.65 Aligned_cols=73 Identities=15% Similarity=-0.045 Sum_probs=50.0
Q ss_pred cEEEEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEEcCCCCceeeecCc-chhc-
Q 008090 64 PSLVAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTITGQRGTLLWHAHI-SWLR- 141 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~-~~~~- 141 (578)
..|++..|..|++.++..+ .- |+..++.- ++ +.-.-||..-...|.+ +++|+|+..|.- .+..
T Consensus 151 n~l~lP~g~~V~~~lTS~D-Vi-----Hsf~IP~l-------g~-k~DaiPGr~n~~~~~~-~~~G~y~g~CsE~CG~~H 215 (315)
T 1fft_B 151 NEIAFPANTPVYFKVTSNS-VM-----NSFFIPRL-------GS-QIYAMAGMQTRLHLIA-NEPGTYDGISASYSGPGF 215 (315)
T ss_dssp SBCCCCSSSEEEEEECBSS-SC-----EEEEEGGG-------TE-EEEECBTSCEEEEEEC-CSCBCCEEBCCSCCSTTT
T ss_pred ceEEEeCCCEEEEEEEeCC-cc-----ceeeeccc-------Cc-EEeecCCcceeeEEec-CCCeEEEEeccccchhhH
Confidence 4788999999999998763 32 44444321 11 1224568888888986 899999998874 3333
Q ss_pred ccceeeEEEe
Q 008090 142 STLYGPIIIL 151 (578)
Q Consensus 142 ~Gl~G~liV~ 151 (578)
+.|.+.++|.
T Consensus 216 s~M~~~v~vv 225 (315)
T 1fft_B 216 SGMKFKAIAT 225 (315)
T ss_dssp TTCCEECCBC
T ss_pred HhccceEEEe
Confidence 6787777776
No 154
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=40.45 E-value=29 Score=29.64 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=25.8
Q ss_pred EEEEEeCCCCc---eeEEEeeeeeccCC---CCCCCCCccccccCCCCeEEEEEE
Q 008090 75 LIKVTNHVSNN---VTIHWHGVRQVTSG---WADGPAYVTQCPIQTGQSYTYNFT 123 (578)
Q Consensus 75 ~v~l~N~l~~~---~siH~HG~~~~~~~---~~DG~~~~~q~~i~pG~~~~y~f~ 123 (578)
+|++.|....+ .+-||.=.+..+.- ..+||-| .|.-|.||++|+|.=-
T Consensus 38 ~ItI~N~~~~~vQL~sRhW~ItD~~G~~~eV~G~GVVG-eqPvL~PGe~F~YtSg 91 (139)
T 1xq4_A 38 TVRITNTGSHPAQVISRHWIITDGEERVQEVRGLGVVG-QQPLLAPGETFEYTSG 91 (139)
T ss_dssp EEEEEECSSSCEEEEEEEEEEECTTSCEEEEEEESSSS-CCCEECTTCEEEEEEE
T ss_pred EEEEEeCCCCCEEEEecEEEEEeCCCCEEEEECCCeec-CCCcCCCCCceEEcCC
Confidence 46666766443 45566533321110 0345433 3566899998877643
No 155
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A
Probab=40.13 E-value=48 Score=27.72 Aligned_cols=62 Identities=16% Similarity=0.339 Sum_probs=36.8
Q ss_pred CcEEEEecCCEEEEEEE---eCCCC--ceeEEE--eeeeecc-CCCCCCCCCccccccCCCCeEEEEEEEc
Q 008090 63 GPSLVAREGDRVLIKVT---NHVSN--NVTIHW--HGVRQVT-SGWADGPAYVTQCPIQTGQSYTYNFTIT 125 (578)
Q Consensus 63 gP~i~v~~Gd~v~v~l~---N~l~~--~~siH~--HG~~~~~-~~~~DG~~~~~q~~i~pG~~~~y~f~~~ 125 (578)
.+.=.++.|..+.|.+. |.... .+.+|+ .|+..+. ....|+--+ ..|||.+|+.++|.+.++
T Consensus 24 ~~pC~l~rG~~~~i~~~f~~~~~~~~l~~~v~~~~~g~~ip~p~~~~daC~~-~~CPl~~G~~~~y~~~~~ 93 (129)
T 1xwv_A 24 SDPCIIHRGKPFTLEALFDANQNTKTAKIEIKASLDGLEIDVPGIDTNACHF-MKCPLVKGQQYDAKYTWN 93 (129)
T ss_dssp TSCEEEETTSEEEEEEEEECCSCBSCCEEEEEEEETTEEECCCSCCCBGGGT-SCSSBCTTCEEEEEEEEE
T ss_pred CCCCEEeCCCeEEEEEEEECCCccceEEEEEEEEEcCEEeecCCCCCCccCC-ccCcccCCEEEEEEEEeE
Confidence 35567788888877776 22212 223332 3444432 111354322 579999999999998774
No 156
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=40.01 E-value=90 Score=24.47 Aligned_cols=71 Identities=10% Similarity=0.081 Sum_probs=40.5
Q ss_pred EEeCCcEEEEEEEecCCCCeEEEEEcC--ceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEee
Q 008090 220 KVKPGKTYLLRLINAALNDELFFSIAN--HTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 220 ~v~~G~~~rlRliN~~~~~~~~~~l~g--h~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
--+||+++++|++-....... ..+ -.+++..-+|+.+.- -.........++..+........|.|.|++..
T Consensus 12 iYrPGetV~~~~~~~~~~~~p---~~~~~~~v~l~dp~g~~v~~---~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~ 84 (102)
T 2p9r_A 12 IYKPGQTVKFRVVSMDENFHP---LNELIPLVYIQDPKGNRIAQ---WQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQK 84 (102)
T ss_dssp EECTTCEEEEEEEEECGGGCB---CCCEEEEEEEECTTSCEEEE---EEEEECBTTEEEEEEECCSSCCCEEEEEEEEC
T ss_pred ccCCCCEEEEEEEEECCCCcC---CCCCceEEEEECCCCCEEEE---EEeecCCCCEEEEEEECCCCCCCeeEEEEEEE
Confidence 458999999997754322111 111 134555555553321 11222345567778888665455999999874
No 157
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=39.99 E-value=34 Score=33.87 Aligned_cols=107 Identities=12% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhccccccceeEE-EEEEEEEEeee--------cCceeeeEEEECCCCCCcEEEEecCCEEEEEEEe
Q 008090 10 ASMSVLLLGLCFLALLPEFAAGITRH-YTFNIKYHNVT--------RLCHTRNIISVNGQFPGPSLVAREGDRVLIKVTN 80 (578)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~--------~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N 80 (578)
|++-.++++.+.++.+...+.+..++ +++-++..... ..-....+..-+=.+||-+++ +.++++|
T Consensus 201 rkv~~~~~~~t~~lV~~g~~~t~~~yP~tiPlQag~~~~i~Pl~~~~~~V~~~v~~A~Y~vpgR~l~------~~~~VtN 274 (382)
T 1yew_A 201 RKVAMGFLAATILIVVMAMSSANSKYPITIPLQAGTMRGMKPLELPAPTVSVKVEDATYRVPGRAMR------MKLTITN 274 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCCCCCBCCCCCCCCCCCSEEEEEEEEEEESSCSEEE------EEEEEEE
T ss_pred ceehhHHHHHHHHHhhhhHhhhhhcCCCcccccccccccccccCCCCCceEEEeeccEEecCCcEEE------EEEEEEc
Q ss_pred CCCC--------ceeEEEeeeeeccCCCCCCCC-------Ccc---ccccCCCCeEEEEEEE
Q 008090 81 HVSN--------NVTIHWHGVRQVTSGWADGPA-------YVT---QCPIQTGQSYTYNFTI 124 (578)
Q Consensus 81 ~l~~--------~~siH~HG~~~~~~~~~DG~~-------~~~---q~~i~pG~~~~y~f~~ 124 (578)
..+. .-+++|=.-.+... ..+-| +++ +.||+|||+.+.+..+
T Consensus 275 ~g~~pvrlgeF~tA~vrFln~~~~~~--~~~~P~~lla~~gL~vsd~~pI~PGETr~~~v~a 334 (382)
T 1yew_A 275 HGNSPIRLGEFYTASVRFLDSDVYKD--TTGYPEDLLAEDGLSVSDNSPLAPGETRTVDVTA 334 (382)
T ss_dssp CSSSCEEEEEEECSSCEEECTTTCCC--CSCCCGGGEETTCEEESCCSCBCTTCEEEEEEEE
T ss_pred CCCCceEeeeEEeccEEEeCCccccc--CCCChHHhhccCCceeCCCCCcCCCceeEEEEEe
No 158
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=37.67 E-value=26 Score=29.69 Aligned_cols=48 Identities=19% Similarity=0.171 Sum_probs=25.9
Q ss_pred EEEEEeCCCCc---eeEEEeeeeeccCC---CCCCCCCccccccCCCCeEEEEEE
Q 008090 75 LIKVTNHVSNN---VTIHWHGVRQVTSG---WADGPAYVTQCPIQTGQSYTYNFT 123 (578)
Q Consensus 75 ~v~l~N~l~~~---~siH~HG~~~~~~~---~~DG~~~~~q~~i~pG~~~~y~f~ 123 (578)
+|++.|....+ .+-||.=.+..+.- ..+||-| .|.-|.||++|+|.=-
T Consensus 33 ~ItI~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVG-eqP~L~PGe~F~YtSg 86 (134)
T 1tza_A 33 TITIINLGEQAAKLETRHWIITDANGKTSEVQGAGVVG-ETPTIPPNTAYQYTSG 86 (134)
T ss_dssp EEEEEECSSSCEEEEEEEEEEEETTSCEEEEEEESBTT-BCCEECTTEEEEEEEE
T ss_pred EEEEEeCCCCCEEEEecEEEEEeCCCCEEEEEcCceEc-CCCcCCCCCceEEcCC
Confidence 46666766443 45566643321110 0345433 3566899998877643
No 159
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=36.31 E-value=1.9e+02 Score=24.07 Aligned_cols=67 Identities=12% Similarity=0.021 Sum_probs=43.6
Q ss_pred EEeCCcEEE--EEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEee
Q 008090 220 KVKPGKTYL--LRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARP 296 (578)
Q Consensus 220 ~v~~G~~~r--lRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 296 (578)
.+++|+.+. ..+.|.|....-.+.+ .+ -.||..+. ...+.|.+|+.-.|.|...... .|.|.+.+..
T Consensus 28 ~v~~G~~~ti~vtV~N~G~~~a~~~~V-----~l-yvng~~v~---t~~v~La~G~s~tv~f~~~~~~-~G~~~v~AvV 96 (127)
T 3idu_A 28 VVGVNKLAEYEVHVKNLGGIGVPSTKV-----RV-YINGTLYK---NWTVSLGPKEEKVLTFNWTPTQ-EGMYRINATV 96 (127)
T ss_dssp EECTTCCEEEEEEEEECSSSCEEEEEE-----EE-EETTEEEE---EEEEEECTTCEEEEEEEECCSS-CEEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCccCCcEE-----EE-EECCEEEe---eEEeccCCCCeEEEEEEEEcCC-CcEEEEEEEE
Confidence 667788654 5588999776544433 22 23666442 2245799999988888875421 2888888764
No 160
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=32.62 E-value=58 Score=30.26 Aligned_cols=78 Identities=14% Similarity=0.301 Sum_probs=54.0
Q ss_pred CeeeEeecCCCEEEEEEeeCCCCCCCCCCccccCCceEEEEecCCCCCCCCCCCCCCCCCCCcceeeeeCCCcEEEEEEE
Q 008090 452 GTRTVLLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVVGLGFGNYDPDKDLMNFNLVDPMERNTIGVPAGGWVAIRFF 531 (578)
Q Consensus 452 ~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ 531 (578)
..+.+.++.|+.+++.+.+.+ ..|. |+|-+.| ...| .-||-.-.+.|.
T Consensus 138 vdn~lvlP~~~~Vr~~vtS~D----ViHs-------f~vP~lg------------------~K~D---aiPGr~n~~~~~ 185 (227)
T 1v54_B 138 VDNRVVLPMEMTIRMLVSSED----VLHS-------WAVPSLG------------------LKTD---AIPGRLNQTTLM 185 (227)
T ss_dssp BSSCEEEETTSCEEEEEEESS----SCEE-------EEEGGGT------------------EEEE---ECTTCCEEEEEC
T ss_pred cCceEEEecCCEEEEEEEeCc----ccce-------eeecccC------------------cEEE---ecCCceEEEEEe
Confidence 355678999999999999854 4444 5553322 1133 235777788899
Q ss_pred ccCceeeEEeeechhhh-hccceEEEEEecC
Q 008090 532 ADNPGVWFMHCHLDVHT-SWGLRMAWIVQNG 561 (578)
Q Consensus 532 adnpG~wl~HCHil~H~-d~GM~~~~~V~~~ 561 (578)
++.||.+...|.-.-.. +.-|-..++|.++
T Consensus 186 ~~~~G~y~g~Cse~CG~~Hs~M~~~v~vv~~ 216 (227)
T 1v54_B 186 SSRPGLYYGQCSEICGSNHSFMPIVLELVPL 216 (227)
T ss_dssp CSSCEEEEECCCSCCSTTGGGCCEEEEEECH
T ss_pred cCCcEEEEEEehhhcccccccCeEEEEEEcH
Confidence 99999999999865544 4567777777653
No 161
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=31.42 E-value=53 Score=26.28 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=34.4
Q ss_pred EEEEEEEeCCCC---ceeEEEeeeeeccCCCCCCCCCccccccCCCCeEEEEEEE-cCCCCce
Q 008090 73 RVLIKVTNHVSN---NVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYTYNFTI-TGQRGTL 131 (578)
Q Consensus 73 ~v~v~l~N~l~~---~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~-~~~~Gt~ 131 (578)
.++|.|+|-|+. ...++..|.-.. ++ --..-..|.||++..+++.. |..+|..
T Consensus 23 ~v~vsf~NPL~~~L~~c~~~vEG~GL~-----~~-~~~~~~~v~pg~~~~~~~~~~P~~~G~~ 79 (102)
T 2xzz_A 23 EVQIVFKNPLPVTLTNVVFRLEGSGLQ-----RP-KILNVGDIGGNETVTLRQSFVPVRPGPR 79 (102)
T ss_dssp EEEEEEECCSSSCBCSEEEEEEETTTE-----EE-EEEEECCBCTTCEEEEEEEECCCSCSSC
T ss_pred EEEEEEECCCCCcccCEEEEEECCCCC-----cc-eEEEcCcCCCCCEEEEEEEEecCcccce
Confidence 688999999975 456777774221 11 01112459999999999887 4556653
No 162
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=29.56 E-value=52 Score=32.27 Aligned_cols=62 Identities=10% Similarity=0.098 Sum_probs=45.0
Q ss_pred EEEEeCCcEEEEEEEecCCCCeEEEEEcCceEEEEeecCCcccceEecEEEeCCCceEEEEEEcCCCCCCCceEEEEeec
Q 008090 218 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAVYVKPFDTDKLLITPGQTANVLLRTKPYFPNATFFMQARPY 297 (578)
Q Consensus 218 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~v~P~~~d~v~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 297 (578)
.+.++.|+.+||++-.. .-.+.|.+... .-.+..-||..-.+.+.++++ |.|...|.-+
T Consensus 152 ~l~lP~g~~V~~~lTS~--DViHsf~IP~l----------------g~k~DaiPGr~n~~~~~~~~~---G~y~g~CsE~ 210 (315)
T 1fft_B 152 EIAFPANTPVYFKVTSN--SVMNSFFIPRL----------------GSQIYAMAGMQTRLHLIANEP---GTYDGISASY 210 (315)
T ss_dssp BCCCCSSSEEEEEECBS--SSCEEEEEGGG----------------TEEEEECBTSCEEEEEECCSC---BCCEEBCCSC
T ss_pred eEEEeCCCEEEEEEEeC--Cccceeeeccc----------------CcEEeecCCcceeeEEecCCC---eEEEEecccc
Confidence 47788999999999754 34555565432 223456688888888989888 9999999866
Q ss_pred CCC
Q 008090 298 FSG 300 (578)
Q Consensus 298 ~~~ 300 (578)
++.
T Consensus 211 CG~ 213 (315)
T 1fft_B 211 SGP 213 (315)
T ss_dssp CST
T ss_pred chh
Confidence 544
No 163
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=28.72 E-value=74 Score=30.13 Aligned_cols=46 Identities=9% Similarity=0.094 Sum_probs=27.3
Q ss_pred EEEEEEEEEEeeecCceeeeEEEECCC---------CC----CcEEEEecCCEEEEEEEeC
Q 008090 34 RHYTFNIKYHNVTRLCHTRNIISVNGQ---------FP----GPSLVAREGDRVLIKVTNH 81 (578)
Q Consensus 34 ~~~~l~~~~~~~~~~g~~~~~~~~Ng~---------~p----gP~i~v~~Gd~v~v~l~N~ 81 (578)
+..++++++..- ...-.++|.-+|. .| .|..|+.+|+.=.||+...
T Consensus 44 k~~sl~l~N~~~--~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~ 102 (257)
T 3q48_A 44 REVTLRVSNTSG--TPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYL 102 (257)
T ss_dssp SEEEEEEEECSS--SCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEEC
T ss_pred cEEEEEEEeCCC--CeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEEC
Confidence 344555555421 1345566776653 11 3889999998777776543
No 164
>2wtp_A ORF131 protein, CZCE; metal binding protein, heavy metal, copper binding; HET: TRS; 1.50A {Ralstonia metallidurans CH34} PDB: 2wto_A*
Probab=27.05 E-value=20 Score=30.17 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=18.6
Q ss_pred EEEeCCcEEEEEEEecCCCCeE
Q 008090 219 LKVKPGKTYLLRLINAALNDEL 240 (578)
Q Consensus 219 l~v~~G~~~rlRliN~~~~~~~ 240 (578)
++|+.||+|||.+.|-+..+.+
T Consensus 73 InV~~GETVrF~v~nkt~~W~F 94 (131)
T 2wtp_A 73 VNVDSGETVAFRAGEKIVAWTF 94 (131)
T ss_dssp EEEETTCEEEEEETTEEEEEEE
T ss_pred EEecCCCEEEEEeCCcEEEEEE
Confidence 8999999999999998855544
No 165
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=26.90 E-value=62 Score=26.58 Aligned_cols=33 Identities=18% Similarity=0.468 Sum_probs=28.4
Q ss_pred EEEccCceeeEEeeechhhhhccceEEE-EEecC
Q 008090 529 RFFADNPGVWFMHCHLDVHTSWGLRMAW-IVQNG 561 (578)
Q Consensus 529 rf~adnpG~wl~HCHil~H~d~GM~~~~-~V~~~ 561 (578)
.+..+.+|...|=|=...|=..||-..+ .|...
T Consensus 73 ~v~l~~~G~~yFic~~~~HC~~Gmkl~In~V~~~ 106 (116)
T 1x9u_A 73 KIMLNTTGPQYYICTVGDHCRVGQKLSINVVGAG 106 (116)
T ss_dssp EEECCSCEEEEEECCSTTTTTTTCEEEEEEECC-
T ss_pred EEEECCCCCEEEECCCCCccccCCEEEEEEECCC
Confidence 4567889999999999999999999999 88754
No 166
>2c34_A ICP, inhibitor of cysteine peptidases; chagasin, immunoglobulin fold; NMR {Leishmania mexicana} SCOP: b.1.26.1
Probab=25.56 E-value=2e+02 Score=23.40 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=16.9
Q ss_pred CcEEEEecCCEEEEEEEeCC
Q 008090 63 GPSLVAREGDRVLIKVTNHV 82 (578)
Q Consensus 63 gP~i~v~~Gd~v~v~l~N~l 82 (578)
|-+|.++.||++.|.|.-+-
T Consensus 14 ~~~i~~~~Ge~~~I~L~~NP 33 (116)
T 2c34_A 14 DKWVDTHVGKTTEIHLKGNP 33 (116)
T ss_dssp CCCEEECSSCCEEEEEECCT
T ss_pred CcEEEEcCCCEEEEEeCCCC
Confidence 45899999999999998654
No 167
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=24.43 E-value=34 Score=27.79 Aligned_cols=69 Identities=19% Similarity=0.119 Sum_probs=0.0
Q ss_pred EEecCCEEEEEEEeCCCCceeEEEeeeeeccCCCCCCCCCcccc---------ccCCCCeEEEEEEEcCCCCceeeecCc
Q 008090 67 VAREGDRVLIKVTNHVSNNVTIHWHGVRQVTSGWADGPAYVTQC---------PIQTGQSYTYNFTITGQRGTLLWHAHI 137 (578)
Q Consensus 67 ~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~q~---------~i~pG~~~~y~f~~~~~~Gt~wYH~H~ 137 (578)
+++.||.|+.+..+. .+.|-.+++. +|..-.+-...+++ ..+|++||-|-.
T Consensus 29 ~F~vGD~LvF~y~~~-------------------~hsV~~V~~~~y~~C~~~~p~~~~~~G~~~v~L-~~~G~~yFic~~ 88 (109)
T 1ws8_A 29 KFHVGDSLLFNYNNK-------------------FHNVLQVDQEQFKSCNSSSPAASYTSGADSIPL-KRPGTFYFLCGI 88 (109)
T ss_dssp CBCTTCEEEEECCTT-------------------TCCEEEECHHHHHHTCCSSCSEEECSSEEEEEC-CSSEEEEEECCS
T ss_pred cCcCCCEEEEeecCC-------------------CceEEEEChHHCCcccCCCcccccCCCCEEEEE-CCCcCEEEECCC
Q ss_pred chhc-ccceeeEEEeCCCC
Q 008090 138 SWLR-STLYGPIIILPKRN 155 (578)
Q Consensus 138 ~~~~-~Gl~G~liV~~~~~ 155 (578)
.+.= .||...|.|....+
T Consensus 89 ~gHC~~GmKl~I~V~~~~s 107 (109)
T 1ws8_A 89 PGHCQLGQKVEIKVDPGSS 107 (109)
T ss_dssp TTTTTTTCEEEEEECC---
T ss_pred CCcccCCCEEEEEEcCCCC
No 168
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A
Probab=23.57 E-value=37 Score=33.81 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=13.9
Q ss_pred cccCCCCeEEEEEEEc
Q 008090 110 CPIQTGQSYTYNFTIT 125 (578)
Q Consensus 110 ~~i~pG~~~~y~f~~~ 125 (578)
..|+||++.+.+|++.
T Consensus 95 ~~L~pG~Sve~~~dla 110 (343)
T 2x3c_A 95 QLLKAGQSLTVQAEVS 110 (343)
T ss_dssp EEECTTCEEEEEEECT
T ss_pred EEeCCCCeEEEEEehh
Confidence 4589999999999984
No 169
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Probab=22.53 E-value=1.6e+02 Score=27.38 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=12.0
Q ss_pred ecEEEeCCCceEEEE
Q 008090 264 TDKLLITPGQTANVL 278 (578)
Q Consensus 264 ~d~v~l~pgeR~dv~ 278 (578)
-..|.|.|||.+.+.
T Consensus 171 G~~i~L~PGESiTl~ 185 (246)
T 3kmh_A 171 GSQLRLSPGESICLP 185 (246)
T ss_dssp TCEEEECTTCEEEEC
T ss_pred CCEEEECCCCeEecC
Confidence 367899999998763
No 170
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Probab=20.81 E-value=1.2e+02 Score=28.16 Aligned_cols=49 Identities=22% Similarity=0.386 Sum_probs=32.3
Q ss_pred cEEEEecCCEEEEEEEeCCC------CceeEEEeeeeeccCCCCCCCCCccccccCCCCeEE
Q 008090 64 PSLVAREGDRVLIKVTNHVS------NNVTIHWHGVRQVTSGWADGPAYVTQCPIQTGQSYT 119 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~l~------~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~ 119 (578)
.+|+.+-|-.|.|.|.|..+ .+.++...|...... --++..+.||++.|
T Consensus 129 EdiinRgGG~L~v~Ly~~~~~~~~~~~~v~V~~DG~~~~~~-------aG~~i~L~PGESiT 183 (246)
T 3kmh_A 129 EDIINRGGGNLIVELWNADSNEQTADSDITVVIDGCRQKHT-------AGSQLRLSPGESIC 183 (246)
T ss_dssp EEEEEEEESCEEEEEEEBCTTSSBCCSCEEEEETTEEEEEC-------TTCEEEECTTCEEE
T ss_pred ccEEecCCCeEEEEEEecCCCccccCCCeEEecCCeEEEeC-------CCCEEEECCCCeEe
Confidence 36888888888899999863 355566556554432 12446789999763
No 171
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A
Probab=20.23 E-value=3.8e+02 Score=26.35 Aligned_cols=71 Identities=20% Similarity=0.178 Sum_probs=45.4
Q ss_pred cEEEEEEEecCCCCeEEEEE---c---CceEEEEeecCCccc----------ceEecEEEeCCCceEEEEEEcCCC---C
Q 008090 225 KTYLLRLINAALNDELFFSI---A---NHTLTVVEADAVYVK----------PFDTDKLLITPGQTANVLLRTKPY---F 285 (578)
Q Consensus 225 ~~~rlRliN~~~~~~~~~~l---~---gh~~~via~DG~~v~----------P~~~d~v~l~pgeR~dv~v~~~~~---~ 285 (578)
-.++.-|-|.|....--|.. + -..|.| ..||..++ |-.-+-+.|.|||.+++.|+.... .
T Consensus 38 ~~vk~tvtN~g~~~~~lLk~~~lD~~~~~~~~V-~~~G~~v~f~Gi~~~~~~~~~d~f~~L~pG~Sve~~~dla~~ydLs 116 (343)
T 2x3c_A 38 VRVNLTLTNTGDKPIRLLKWQLPGSDDAPLFLV-ERDGQPVSYEGALIKRAAPTDKDFQLLKAGQSLTVQAEVSGLYDMS 116 (343)
T ss_dssp CEEEEEEEECSSSCEEEEGGGSCSSSCCCCEEE-EETTEECCBCSCCCCCCCCCGGGEEEECTTCEEEEEEECTTTBTCC
T ss_pred eEEEEEEEeCCCCceEeeccCCCCcCccceEEE-EeCCcccceeeEEEeccCCChhhcEEeCCCCeEEEEEehhhccccC
Confidence 45667777877544221222 2 234555 57776541 223478999999999999999752 2
Q ss_pred CCCceEEEEee
Q 008090 286 PNATFFMQARP 296 (578)
Q Consensus 286 ~~g~y~l~~~~ 296 (578)
.+|.|.++...
T Consensus 117 ~gG~y~v~~~g 127 (343)
T 2x3c_A 117 AQGQYSIRYQL 127 (343)
T ss_dssp SCEEEEEEEC-
T ss_pred CCceEEEEEee
Confidence 35999999864
No 172
>2cio_B Inhibitor of cysteine peptidase; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Trypanosoma brucei}
Probab=20.06 E-value=3.4e+02 Score=22.10 Aligned_cols=18 Identities=11% Similarity=0.246 Sum_probs=14.7
Q ss_pred cEEEEecCCEEEEEEEeC
Q 008090 64 PSLVAREGDRVLIKVTNH 81 (578)
Q Consensus 64 P~i~v~~Gd~v~v~l~N~ 81 (578)
-+|.++.||++.|.|.=+
T Consensus 13 ~ti~l~~Ge~~~I~L~~N 30 (121)
T 2cio_B 13 KTIRMVIGETFTIELESN 30 (121)
T ss_pred cEEEEcCCCEEEEEeCCC
Confidence 479999999999988744
Done!