BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008093
(578 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZP|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZQ|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
pdb|3AZQ|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
Length = 662
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 324 DFDS-HATCLVGKFETVDTYYRNCSSSTYVGNVSIPLLCISSLDDPVCTVE 373
DF+S + L+G FE YR+ + T V +P L + L+DPVC E
Sbjct: 549 DFESRYLDFLIGSFEEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPE 599
>pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase
pdb|3AZO|B Chain B, Crystal Structure Of Puromycin Hydrolase
Length = 662
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 324 DFDS-HATCLVGKFETVDTYYRNCSSSTYVGNVSIPLLCISSLDDPVCTVE 373
DF+S + L+G FE YR+ + T V +P L + L+DPVC E
Sbjct: 549 DFESRYLDFLIGSFEEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPE 599
>pdb|1UAY|A Chain A, Crystal Structure Of Type Ii 3-Hydroxyacyl-Coa
Dehydrogenase From Thermus Thermophilus Hb8
pdb|1UAY|B Chain B, Crystal Structure Of Type Ii 3-Hydroxyacyl-Coa
Dehydrogenase From Thermus Thermophilus Hb8
Length = 242
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 190 WNVVVSNHRGLGGVSITSDCFYNAG---WTEDAREVIGYLHHEYPKAPLFAIGTSIGANI 246
+ VVV + R G D Y G ED R + E APLFA+ ++ G +
Sbjct: 27 YRVVVLDLRREG-----EDLIYVEGDVTREEDVRRAVARAQEE---APLFAVVSAAGVGL 78
Query: 247 LVKYLGEEG 255
K LG+EG
Sbjct: 79 AEKILGKEG 87
>pdb|2BF4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BF4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BN4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
pdb|2BN4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
Length = 682
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 144 PGDVFHANNFISKDDTTPIAIVIPGLTSDSAASYIRHLVF---NTAKRGWNVVVSNHRGL 200
P V +N + + +TP+ ++ PG +IR V + K G NV + H
Sbjct: 509 PVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILF 568
Query: 201 GGVSITSDCFYNAGWTEDAREVIG 224
G T D Y W E A+++ G
Sbjct: 569 YGSRNTDDFLYQDEWPEYAKKLDG 592
>pdb|1UZB|A Chain A, 1-pyrroline-5-carboxylate Dehydrogenase
pdb|1UZB|B Chain B, 1-pyrroline-5-carboxylate Dehydrogenase
pdb|2EIW|A Chain A, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Proline
pdb|2EIW|B Chain B, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Proline
Length = 516
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 204 SITSDCFYNAG--WTE---DAREVIGYLHHEYPKAPLFAIGTSIGANILVKYLGEEGEKT 258
+ + Y G W E D E I ++ + Y +A A+ A +V Y GE+ E
Sbjct: 115 ELEATLVYEVGKNWVEASADVAEAIDFIEY-YARA---ALRYRYPAVEVVPYPGEDNESF 170
Query: 259 PVA-GAAAICSPWD--------LLIGDRFIGRRLIQKIYDRALTIGLQDYAQLHE 304
V GA + +PW+ +++G +G +I K + A+ +G + + HE
Sbjct: 171 YVPLGAGVVIAPWNFPVAIFTGMIVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHE 225
>pdb|2BPO|A Chain A, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a.
pdb|2BPO|B Chain B, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a
Length = 682
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 144 PGDVFHANNFISKDDTTPIAIVIPGLTSDSAASYIRHLVF---NTAKRGWNVVVSNHRGL 200
P V +N + + +TP+ ++ PG +IR V + K G NV + H
Sbjct: 509 PVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILF 568
Query: 201 GGVSITSDCFYNAGWTEDAREVIG 224
G T D Y W E A+++ G
Sbjct: 569 YGSRNTDDFLYQDEWPEYAKKLDG 592
>pdb|2BJA|A Chain A, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nadh
pdb|2BJA|B Chain B, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nadh
pdb|2J40|A Chain A, 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus
Thermophilus With Bound Inhibitor L-Proline And Nad.
pdb|2J40|B Chain B, 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus
Thermophilus With Bound Inhibitor L-Proline And Nad.
pdb|2EJD|A Chain A, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Alanine
pdb|2EJD|B Chain B, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Alanine
pdb|2EJL|A Chain A, Crystal Analysis Of Delta1-pyrroline-5-carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-serine
pdb|2EJL|B Chain B, Crystal Analysis Of Delta1-pyrroline-5-carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-serine
Length = 516
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 204 SITSDCFYNAG--WTE---DAREVIGYLHHEYPKAPLFAIGTSIGANILVKYLGEEGEKT 258
+ + Y G W E D E I ++ + Y +A A+ A +V Y GE+ E
Sbjct: 115 ELEATLVYEVGKNWVEASADVAEAIDFIEY-YARA---ALRYRYPAVEVVPYPGEDNESF 170
Query: 259 PVA-GAAAICSPWD--------LLIGDRFIGRRLIQKIYDRALTIGLQDYAQLHE 304
V GA + +PW+ +++G +G +I K + A+ +G + + HE
Sbjct: 171 YVPLGAGVVIAPWNFPVAIFTGMIVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHE 225
>pdb|2BHP|A Chain A, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nad.
pdb|2BHP|B Chain B, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nad.
pdb|2BJK|A Chain A, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nad And Citrate.
pdb|2BJK|B Chain B, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nad And Citrate.
pdb|2IY6|A Chain A, 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus With
Bound Citrate
pdb|2IY6|B Chain B, 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus With
Bound Citrate
pdb|2EHQ|A Chain A, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nadp
pdb|2EHQ|B Chain B, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nadp
pdb|2EJ6|A Chain A, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
D-Proline
pdb|2EJ6|B Chain B, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
D-Proline
pdb|2BHQ|A Chain A, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Product Glutamate.
pdb|2BHQ|B Chain B, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Product Glutamate.
pdb|2J5N|A Chain A, 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus
Thermophirus With Bound Inhibitor Glycine And Nad.
pdb|2J5N|B Chain B, 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus
Thermophirus With Bound Inhibitor Glycine And Nad.
pdb|2EIT|A Chain A, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Alanine And Nad
pdb|2EIT|B Chain B, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Alanine And Nad
pdb|2EHU|A Chain A, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nad And Inhibitor
L-Serine
pdb|2EHU|B Chain B, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nad And Inhibitor
L-Serine
pdb|2EII|A Chain A, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Valine And Nad.
pdb|2EII|B Chain B, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Valine And Nad
Length = 516
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 204 SITSDCFYNAG--WTE---DAREVIGYLHHEYPKAPLFAIGTSIGANILVKYLGEEGEKT 258
+ + Y G W E D E I ++ + Y +A A+ A +V Y GE+ E
Sbjct: 115 ELEATLVYEVGKNWVEASADVAEAIDFIEY-YARA---ALRYRYPAVEVVPYPGEDNESF 170
Query: 259 PVA-GAAAICSPWD--------LLIGDRFIGRRLIQKIYDRALTIGLQDYAQLHE 304
V GA + +PW+ +++G +G +I K + A+ +G + + HE
Sbjct: 171 YVPLGAGVVIAPWNFPVAIFTGMIVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHE 225
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,367,834
Number of Sequences: 62578
Number of extensions: 742733
Number of successful extensions: 1556
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1553
Number of HSP's gapped (non-prelim): 13
length of query: 578
length of database: 14,973,337
effective HSP length: 104
effective length of query: 474
effective length of database: 8,465,225
effective search space: 4012516650
effective search space used: 4012516650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)