Query 008094
Match_columns 578
No_of_seqs 223 out of 3031
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 19:23:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 100.0 2E-66 4.3E-71 557.7 56.8 521 32-562 4-557 (557)
2 PRK15049 L-asparagine permease 100.0 3E-55 6.6E-60 467.1 47.1 420 54-556 23-469 (499)
3 PRK11387 S-methylmethionine tr 100.0 8.3E-55 1.8E-59 463.0 46.4 425 54-561 9-461 (471)
4 PRK10746 putative transport pr 100.0 4.1E-53 8.8E-58 447.3 46.6 425 53-563 4-456 (461)
5 PRK11357 frlA putative fructos 100.0 3.3E-53 7.2E-58 448.4 45.7 422 54-561 3-440 (445)
6 TIGR00908 2A0305 ethanolamine 100.0 5E-53 1.1E-57 447.0 46.5 420 54-562 2-436 (442)
7 TIGR00909 2A0306 amino acid tr 100.0 1.2E-52 2.6E-57 443.1 48.6 428 57-555 1-429 (429)
8 PRK10249 phenylalanine transpo 100.0 4.9E-53 1.1E-57 447.1 45.2 364 53-441 15-397 (458)
9 PRK10644 arginine:agmatin anti 100.0 1.9E-52 4.1E-57 442.3 47.2 414 54-556 3-428 (445)
10 COG0833 LysP Amino acid transp 100.0 3.3E-53 7.1E-58 428.1 38.2 423 56-560 41-501 (541)
11 PRK10655 potE putrescine trans 100.0 1.9E-52 4.1E-57 442.0 45.2 420 57-563 4-435 (438)
12 PRK10836 lysine transporter; P 100.0 2.4E-52 5.1E-57 445.9 45.0 399 53-534 9-436 (489)
13 PRK10238 aromatic amino acid t 100.0 3.8E-52 8.2E-57 440.1 45.7 366 53-443 6-390 (456)
14 TIGR01773 GABAperm gamma-amino 100.0 6E-52 1.3E-56 439.7 44.9 368 53-445 6-394 (452)
15 PRK10580 proY putative proline 100.0 1.6E-51 3.4E-56 436.5 47.4 419 53-556 3-447 (457)
16 PRK11049 D-alanine/D-serine/gl 100.0 4.9E-51 1.1E-55 433.5 46.8 366 54-444 15-404 (469)
17 PRK10435 cadB lysine/cadaverin 100.0 5E-51 1.1E-55 429.7 44.4 412 56-562 2-430 (435)
18 KOG1286 Amino acid transporter 100.0 1.8E-52 3.9E-57 439.3 31.7 489 54-561 25-553 (554)
19 COG1113 AnsP Gamma-aminobutyra 100.0 1.6E-51 3.5E-56 407.5 35.1 421 53-559 7-453 (462)
20 TIGR00911 2A0308 L-type amino 100.0 1.3E-50 2.9E-55 434.4 44.8 374 53-445 36-421 (501)
21 TIGR00905 2A0302 transporter, 100.0 3.7E-50 7.9E-55 427.6 47.7 421 57-561 5-441 (473)
22 TIGR00913 2A0310 amino acid pe 100.0 2.3E-50 5E-55 430.9 45.1 421 58-560 1-465 (478)
23 PRK10197 gamma-aminobutyrate t 100.0 2.8E-50 6.1E-55 424.6 42.9 408 69-562 2-435 (446)
24 KOG1287 Amino acid transporter 100.0 5.6E-51 1.2E-55 411.0 35.1 423 53-560 6-444 (479)
25 PRK11021 putative transporter; 100.0 7.2E-49 1.6E-53 410.9 47.4 398 61-560 1-406 (410)
26 TIGR03810 arg_ornith_anti argi 100.0 8.4E-48 1.8E-52 409.0 46.0 415 59-559 1-434 (468)
27 TIGR00930 2a30 K-Cl cotranspor 100.0 2.9E-48 6.2E-53 433.8 43.8 426 56-561 73-542 (953)
28 TIGR00907 2A0304 amino acid pe 100.0 5E-47 1.1E-51 405.4 46.0 375 51-439 4-409 (482)
29 KOG1289 Amino acid transporter 100.0 8.1E-49 1.8E-53 395.1 29.6 398 43-456 32-461 (550)
30 TIGR03428 ureacarb_perm permea 100.0 2.3E-46 4.9E-51 398.7 47.0 380 51-439 5-402 (475)
31 TIGR03813 put_Glu_GABA_T putat 100.0 8.5E-43 1.8E-47 371.5 45.1 426 59-503 1-458 (474)
32 COG0531 PotE Amino acid transp 100.0 3E-42 6.5E-47 368.6 44.7 378 53-447 6-397 (466)
33 TIGR00910 2A0307_GadC glutamat 100.0 1.3E-41 2.9E-46 362.7 45.2 395 58-474 3-423 (507)
34 PF13520 AA_permease_2: Amino 100.0 1.6E-42 3.6E-47 365.9 37.6 362 61-445 1-381 (426)
35 PRK15238 inner membrane transp 100.0 1.1E-40 2.3E-45 356.8 45.5 434 57-505 5-493 (496)
36 PF00324 AA_permease: Amino ac 100.0 1.1E-44 2.5E-49 386.8 13.3 359 66-442 2-395 (478)
37 TIGR00837 araaP aromatic amino 100.0 2.6E-28 5.7E-33 253.3 32.0 336 68-433 4-350 (381)
38 KOG2082 K+/Cl- cotransporter K 100.0 3E-27 6.4E-32 241.9 26.2 419 66-559 120-648 (1075)
39 KOG1288 Amino acid transporter 100.0 3.8E-26 8.2E-31 232.2 27.3 381 60-453 66-485 (945)
40 TIGR00912 2A0309 spore germina 99.9 1.3E-21 2.9E-26 201.4 36.8 287 59-370 1-294 (359)
41 KOG2083 Na+/K+ symporter [Inor 99.9 8.9E-21 1.9E-25 192.3 21.3 366 58-447 27-423 (643)
42 PHA02764 hypothetical protein; 99.9 2.6E-19 5.6E-24 168.0 25.3 277 52-392 5-285 (399)
43 TIGR00796 livcs branched-chain 99.8 1.5E-17 3.2E-22 168.4 33.5 336 70-448 4-363 (378)
44 TIGR00814 stp serine transport 99.8 5.5E-16 1.2E-20 159.3 32.6 284 67-373 9-312 (397)
45 PF03222 Trp_Tyr_perm: Tryptop 99.8 1.1E-14 2.4E-19 150.0 38.8 292 59-370 1-303 (394)
46 PRK10483 tryptophan permease; 99.7 2.6E-13 5.7E-18 138.5 36.9 296 58-373 8-314 (414)
47 PRK09664 tryptophan permease T 99.7 2.5E-13 5.4E-18 138.5 35.4 291 62-371 10-313 (415)
48 PF03845 Spore_permease: Spore 99.7 9.6E-14 2.1E-18 140.5 31.7 285 60-370 1-290 (320)
49 PRK15132 tyrosine transporter 99.7 5.5E-13 1.2E-17 136.8 35.8 291 62-373 4-303 (403)
50 COG0814 SdaC Amino acid permea 99.6 4.4E-12 9.6E-17 131.7 35.5 283 56-357 4-300 (415)
51 PRK13629 threonine/serine tran 99.6 2.1E-11 4.5E-16 124.5 34.9 286 68-373 26-347 (443)
52 KOG1303 Amino acid transporter 99.2 8.3E-09 1.8E-13 106.6 29.0 277 57-359 34-322 (437)
53 PF01235 Na_Ala_symp: Sodium:a 99.2 4.5E-09 9.8E-14 107.1 26.5 290 58-372 16-338 (416)
54 PLN03074 auxin influx permease 99.2 8.2E-08 1.8E-12 101.5 34.6 238 59-321 44-294 (473)
55 PRK11375 allantoin permease; P 99.2 7.3E-07 1.6E-11 94.8 40.3 327 55-407 21-363 (484)
56 KOG1304 Amino acid transporter 99.2 1.5E-07 3.4E-12 95.8 32.6 347 59-440 45-415 (449)
57 PF13906 AA_permease_C: C-term 99.1 9E-11 1.9E-15 81.5 5.6 51 510-560 1-51 (51)
58 PTZ00206 amino acid transporte 99.1 3.7E-07 8.1E-12 97.0 35.9 245 62-321 61-319 (467)
59 COG1115 AlsT Na+/alanine sympo 99.1 8.3E-07 1.8E-11 89.6 32.4 290 57-372 59-382 (452)
60 TIGR00835 agcS amino acid carr 99.1 3.7E-07 7.9E-12 93.8 30.5 286 59-372 45-365 (425)
61 COG3949 Uncharacterized membra 98.9 4.3E-06 9.3E-11 80.9 29.4 263 67-363 9-280 (349)
62 COG1457 CodB Purine-cytosine p 98.9 3.3E-05 7.1E-10 79.5 37.1 242 94-370 54-299 (442)
63 PRK11017 codB cytosine permeas 98.8 0.00033 7E-09 73.2 40.6 215 58-302 8-226 (404)
64 PRK09442 panF sodium/panthothe 98.6 0.00087 1.9E-08 72.0 38.8 281 58-366 40-345 (483)
65 PF01490 Aa_trans: Transmembra 98.6 1.3E-08 2.8E-13 107.0 0.9 355 59-442 1-377 (409)
66 TIGR00800 ncs1 NCS1 nucleoside 98.5 0.0013 2.9E-08 69.6 36.4 113 56-171 9-123 (442)
67 COG1953 FUI1 Cytosine/uracil/t 98.4 0.0045 9.8E-08 64.1 40.6 364 53-442 33-418 (497)
68 PF05525 Branch_AA_trans: Bran 98.3 0.0029 6.3E-08 65.4 32.6 316 71-426 13-345 (427)
69 TIGR02119 panF sodium/pantothe 98.2 0.016 3.5E-07 62.0 40.4 283 58-367 39-345 (471)
70 TIGR00813 sss transporter, SSS 98.2 0.0082 1.8E-07 63.0 32.7 283 58-367 2-321 (407)
71 COG0733 Na+-dependent transpor 98.1 0.0091 2E-07 61.2 29.8 245 64-315 12-270 (439)
72 PRK15433 branched-chain amino 97.9 0.035 7.5E-07 57.6 29.2 273 71-370 18-308 (439)
73 KOG1305 Amino acid transporter 97.8 0.0066 1.4E-07 62.9 24.1 250 58-322 3-258 (411)
74 PF00474 SSF: Sodium:solute sy 97.8 0.0026 5.6E-08 66.8 21.7 288 58-375 5-324 (406)
75 TIGR02121 Na_Pro_sym sodium/pr 97.8 0.072 1.6E-06 57.3 40.8 42 326-367 304-345 (487)
76 PRK12488 acetate permease; Pro 97.8 0.096 2.1E-06 57.1 40.2 108 58-169 66-176 (549)
77 TIGR02358 thia_cytX probable h 97.8 0.07 1.5E-06 55.4 35.3 242 93-370 30-274 (386)
78 PRK15419 proline:sodium sympor 97.7 0.11 2.4E-06 56.0 40.3 42 326-367 311-352 (502)
79 PRK00701 manganese transport p 97.7 0.11 2.3E-06 54.8 35.8 74 90-167 63-137 (439)
80 PF01566 Nramp: Natural resist 97.6 0.1 2.2E-06 53.7 30.4 46 327-372 239-285 (358)
81 PRK10484 putative transporter; 97.6 0.15 3.2E-06 55.4 42.1 82 285-367 270-354 (523)
82 TIGR02711 symport_actP cation/ 97.6 0.16 3.5E-06 55.4 34.1 108 58-169 66-176 (549)
83 COG1914 MntH Mn2+ and Fe2+ tra 97.5 0.15 3.2E-06 52.8 33.4 70 100-169 52-122 (416)
84 PF02133 Transp_cyt_pur: Perme 97.5 0.0039 8.4E-08 66.2 16.8 170 57-237 5-177 (440)
85 PLN00151 potassium transporter 97.4 0.031 6.7E-07 61.4 22.3 219 198-429 275-510 (852)
86 PRK09395 actP acetate permease 97.4 0.35 7.5E-06 52.9 39.8 109 58-169 68-178 (551)
87 PF02705 K_trans: K+ potassium 97.3 0.19 4.2E-06 53.3 26.8 222 199-433 134-371 (534)
88 COG1114 BrnQ Branched-chain am 97.3 0.24 5.3E-06 50.3 31.5 278 65-367 9-303 (431)
89 COG0591 PutP Na+/proline sympo 97.3 0.37 8E-06 51.8 38.1 284 58-366 37-351 (493)
90 PF02028 BCCT: BCCT family tra 97.3 0.34 7.4E-06 51.4 34.7 166 258-437 300-482 (485)
91 TIGR03648 Na_symport_lg probab 97.3 0.42 9.2E-06 52.2 33.7 108 58-170 31-142 (552)
92 KOG2466 Uridine permease/thiam 97.0 0.17 3.7E-06 52.0 21.6 308 55-383 50-381 (572)
93 PLN00150 potassium ion transpo 97.0 0.11 2.4E-06 57.1 21.6 219 198-429 215-450 (779)
94 PLN00149 potassium transporter 97.0 0.37 8.1E-06 53.2 25.2 221 199-429 200-437 (779)
95 PRK10745 trkD potassium transp 96.6 1.2 2.5E-05 48.2 24.5 221 198-431 144-380 (622)
96 TIGR00794 kup potassium uptake 96.4 0.24 5.2E-06 54.2 18.8 221 198-431 169-406 (688)
97 PLN00148 potassium transporter 95.9 0.21 4.6E-06 55.0 14.9 218 198-428 198-432 (785)
98 PRK09928 choline transport pro 93.9 13 0.00027 41.2 29.4 90 343-436 409-501 (679)
99 PRK09950 putative transporter; 93.8 11 0.00024 40.3 31.7 102 329-437 391-496 (506)
100 TIGR00910 2A0307_GadC glutamat 92.7 2.2 4.7E-05 46.2 14.0 60 502-561 388-466 (507)
101 KOG3660 Sodium-neurotransmitte 91.2 27 0.00059 38.5 28.2 47 62-108 39-87 (629)
102 TIGR03813 put_Glu_GABA_T putat 91.1 5.9 0.00013 42.4 15.1 58 502-559 385-458 (474)
103 PF00209 SNF: Sodium:neurotran 90.1 32 0.00069 37.4 29.2 101 211-314 194-304 (523)
104 COG4025 Predicted membrane pro 89.9 3.1 6.7E-05 38.6 9.6 16 363-378 55-70 (284)
105 COG3158 Kup K+ transporter [In 89.0 36 0.00077 36.5 17.9 43 198-243 149-191 (627)
106 TIGR00842 bcct choline/carniti 86.0 50 0.0011 34.9 30.6 90 342-435 355-448 (453)
107 COG4145 PanF Na+/panthothenate 85.5 45 0.00096 33.9 30.2 208 134-365 117-342 (473)
108 PRK15238 inner membrane transp 83.3 42 0.0009 36.2 15.9 13 384-396 238-250 (496)
109 KOG4303 Vesicular inhibitory a 83.3 15 0.00033 36.6 10.9 238 56-318 112-360 (524)
110 PRK03356 L-carnitine/gamma-but 81.4 83 0.0018 33.8 31.3 102 329-437 394-498 (504)
111 TIGR01197 nramp NRAMP (natural 81.2 73 0.0016 33.1 36.2 43 329-371 282-324 (390)
112 PF05297 Herpes_LMP1: Herpesvi 78.1 0.69 1.5E-05 44.0 0.0 16 383-398 13-28 (381)
113 COG1294 AppB Cytochrome bd-typ 77.9 24 0.00052 35.7 10.7 24 414-437 167-190 (346)
114 KOG1286 Amino acid transporter 77.6 1.1E+02 0.0025 33.3 16.9 48 197-244 155-202 (554)
115 COG1292 BetT Choline-glycine b 75.9 1.2E+02 0.0026 32.6 27.6 88 344-439 406-497 (537)
116 PF02554 CstA: Carbon starvati 70.7 1.3E+02 0.0028 30.8 21.8 57 264-321 292-351 (376)
117 PTZ00206 amino acid transporte 58.3 1.8E+02 0.004 31.0 13.3 55 328-382 122-176 (467)
118 PF03169 OPT: OPT oligopeptide 55.1 2.3E+02 0.0051 31.5 13.9 55 264-318 436-492 (624)
119 PF05393 Hum_adeno_E3A: Human 51.9 17 0.00038 28.1 2.9 33 482-514 37-69 (94)
120 PF14256 YwiC: YwiC-like prote 51.5 1.5E+02 0.0033 25.3 9.8 45 396-440 8-52 (129)
121 COG4858 Uncharacterized membra 51.0 1.8E+02 0.004 26.4 9.5 7 387-393 89-95 (226)
122 PRK10263 DNA translocase FtsK; 43.8 3.8E+02 0.0082 32.5 13.3 10 526-535 174-183 (1355)
123 PF03595 SLAC1: Voltage-depend 43.3 2.7E+02 0.0059 27.9 11.3 17 412-428 32-48 (330)
124 COG2271 UhpC Sugar phosphate p 41.9 3.5E+02 0.0076 28.4 11.4 46 353-407 68-113 (448)
125 PF14256 YwiC: YwiC-like prote 40.7 1.7E+02 0.0036 25.0 7.7 18 498-515 46-63 (129)
126 KOG2349 Na+:iodide/myo-inosito 39.8 3.1E+02 0.0066 30.1 11.1 26 124-149 108-133 (585)
127 PF14007 YtpI: YtpI-like prote 38.0 37 0.00081 26.8 3.0 28 532-560 54-81 (89)
128 KOG3659 Sodium-neurotransmitte 37.4 5.9E+02 0.013 27.9 29.1 115 198-313 255-377 (629)
129 PF13687 DUF4153: Domain of un 37.3 3.5E+02 0.0076 25.3 11.6 11 543-553 165-175 (217)
130 COG4147 DhlC Predicted symport 37.1 5.4E+02 0.012 27.4 30.1 115 94-236 79-194 (529)
131 PF02009 Rifin_STEVOR: Rifin/s 35.9 23 0.0005 35.0 2.0 31 540-570 264-294 (299)
132 PRK00968 tetrahydromethanopter 35.3 50 0.0011 30.5 3.7 31 282-312 204-235 (240)
133 TIGR00816 tdt C4-dicarboxylate 35.0 4.8E+02 0.01 26.1 13.2 12 511-522 132-143 (320)
134 PF12794 MscS_TM: Mechanosensi 34.5 5.1E+02 0.011 26.3 17.4 39 277-315 27-69 (340)
135 TIGR02230 ATPase_gene1 F0F1-AT 34.0 1.3E+02 0.0027 24.5 5.5 47 56-104 37-86 (100)
136 PHA02898 virion envelope prote 34.0 94 0.002 24.3 4.4 21 540-560 53-73 (92)
137 PF05961 Chordopox_A13L: Chord 33.4 71 0.0015 23.6 3.5 24 539-562 7-30 (68)
138 PHA03049 IMV membrane protein; 33.2 74 0.0016 23.3 3.6 24 539-562 7-30 (68)
139 PRK10249 phenylalanine transpo 33.0 4.2E+02 0.009 28.1 11.2 26 506-531 401-426 (458)
140 PF09874 DUF2101: Predicted me 32.6 4E+02 0.0088 24.6 9.1 25 483-507 119-143 (206)
141 COG3872 Predicted metal-depend 31.7 2.9E+02 0.0062 26.6 8.1 32 289-320 98-129 (318)
142 PF12666 PrgI: PrgI family pro 31.7 1.6E+02 0.0034 23.3 5.9 32 54-85 10-41 (93)
143 PRK10746 putative transport pr 30.8 5.5E+02 0.012 27.2 11.6 36 497-533 382-418 (461)
144 PF12606 RELT: Tumour necrosis 30.4 72 0.0016 22.2 3.1 21 543-563 12-35 (50)
145 COG0531 PotE Amino acid transp 29.6 6.7E+02 0.015 26.2 12.8 33 497-529 384-419 (466)
146 PHA03048 IMV membrane protein; 29.6 1.7E+02 0.0037 23.0 5.2 21 540-560 52-72 (93)
147 TIGR00913 2A0310 amino acid pe 29.5 3.7E+02 0.008 28.6 10.2 31 440-470 398-428 (478)
148 COG3949 Uncharacterized membra 28.6 6.3E+02 0.014 25.5 18.5 68 298-368 40-107 (349)
149 PF01102 Glycophorin_A: Glycop 27.6 66 0.0014 27.2 3.0 18 488-505 77-94 (122)
150 PRK10580 proY putative proline 27.4 4.2E+02 0.0092 28.0 10.1 21 484-504 431-451 (457)
151 COG4060 MtrD Tetrahydromethano 27.3 77 0.0017 28.2 3.4 31 283-313 195-226 (230)
152 PF07301 DUF1453: Protein of u 26.9 2.1E+02 0.0045 25.1 6.0 37 517-553 35-72 (148)
153 PF07760 DUF1616: Protein of u 26.2 6.4E+02 0.014 24.8 12.5 34 482-515 89-122 (287)
154 PRK10836 lysine transporter; P 26.0 7.4E+02 0.016 26.4 11.7 24 511-534 409-433 (489)
155 KOG2736 Presenilin [Signal tra 25.6 2.3E+02 0.0049 28.8 6.7 9 124-132 381-389 (406)
156 PF11947 DUF3464: Protein of u 24.1 2.9E+02 0.0063 24.4 6.5 66 64-129 64-134 (153)
157 TIGR01478 STEVOR variant surfa 23.9 1.1E+02 0.0024 29.8 4.1 23 482-504 266-288 (295)
158 COG4146 Predicted symporter [G 23.7 8.2E+02 0.018 25.2 26.4 47 126-172 105-152 (571)
159 PF11998 DUF3493: Protein of u 23.1 3.5E+02 0.0076 20.7 6.7 42 276-317 4-45 (75)
160 PF15050 SCIMP: SCIMP protein 22.2 87 0.0019 26.0 2.6 23 540-562 16-38 (133)
161 PF05767 Pox_A14: Poxvirus vir 21.5 2.6E+02 0.0057 22.1 5.0 20 540-559 53-72 (92)
162 PF01102 Glycophorin_A: Glycop 20.8 83 0.0018 26.6 2.4 19 542-560 76-94 (122)
163 KOG3814 Signaling protein van 20.4 4.9E+02 0.011 26.6 7.8 29 483-511 160-189 (531)
164 TIGR00947 2A73 probable bicarb 20.3 1E+03 0.022 25.0 14.3 43 389-431 65-107 (425)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=2e-66 Score=557.66 Aligned_cols=521 Identities=36% Similarity=0.632 Sum_probs=419.6
Q ss_pred hhhhhhhhcccCCCCcCccCCCCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHH-hhhCcHHHHHHHHHHHHHHHHHH
Q 008094 32 SHFWSSALRAKTLTAPSVRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVA-RDAGPGVTISFLLAGAASVLNAL 110 (578)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~-~~~G~~~~~~~ii~~l~~~~~a~ 110 (578)
.++.++..|+|+.+++ ++++++++|+++.+|++++++|.++|+|+|..++... ..+||+.+++|+++++.+++.++
T Consensus 4 ~~~~~~~~r~k~~~~~---~~~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al 80 (557)
T TIGR00906 4 LTFARCLIRRKIVDLD---SREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGF 80 (557)
T ss_pred HHHHHHHhccCCcccc---cccccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence 4566677777776542 2245579999999999999999999999999999876 46899999999999999999999
Q ss_pred HHHHHhhcCCCCccchhhhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccCCCCccccCCCcc
Q 008094 111 CYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELF-PFFKENIPSWIGHGGEE 189 (578)
Q Consensus 111 ~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 189 (578)
+|+|+++++|+ +||.|.|+++.+|+..||++||.++++|....+..+..++.|+..+++.. ..+... ..... ..
T Consensus 81 ~yaElas~~P~-sGg~Y~y~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~---~~~~~-~~ 155 (557)
T TIGR00906 81 CYAEFGARVPK-AGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRT---YFKLN-YD 155 (557)
T ss_pred HHHHHHHhCCC-CCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc---ccccc-CC
Confidence 99999999999 99999999999999999999999999999999999999999998876521 100000 00000 00
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC--------CCCCCChHHH
Q 008094 190 FLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS--------PFAPNGFKEI 261 (578)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~g~~~~ 261 (578)
... ....+++++++++.+.+|++|+|..+++|++++.++++.++++++.+..+.+.+||. ++.|.|+.++
T Consensus 156 ~l~--~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~ 233 (557)
T TIGR00906 156 GLA--EYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGV 233 (557)
T ss_pred ccc--ccchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHH
Confidence 000 112346677778888999999999999999999999999988888888776666665 5677788899
Q ss_pred HHHHHHHHhhccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHH
Q 008094 262 LTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYV 341 (578)
Q Consensus 262 ~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 341 (578)
+.+...++|+|.|+|.+++++||+|||+||+|||++.++.+++++|++..++.....|+++++.++|+.++++..+.++.
T Consensus 234 l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~ 313 (557)
T TIGR00906 234 LSGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPA 313 (557)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888899999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 008094 342 SVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVG 421 (578)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~ 421 (578)
..++.++.+++.+++.++.+++.+|++|+|||||.+|++|+|+|||+++|++|+++.++++.++.++.+++.+.++.+++
T Consensus 314 ~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig 393 (557)
T TIGR00906 314 KYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIG 393 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999988888888999999999999
Q ss_pred HHHHHHHHHHHHhhheecCCCCC-CCc------c--c----------cch--hhhhhHHHHHHHHHhhhhcc-hhhccch
Q 008094 422 TLTGYSVVSACVIALRWKDRTSR-NDS------S--R----------LTS--AWRQGVICLIIIACCGFGAG-LFYRINA 479 (578)
Q Consensus 422 ~l~~y~~~~~~~~~~r~~~~~~~-~~~------~--~----------~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 479 (578)
.++.|.+.+++++++|++++... +|. . . ..+ .....++......+..+... .....++
T Consensus 394 ~ll~y~lv~~~~l~lR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (557)
T TIGR00906 394 TLLAYSLVAACVLILRYQPGLVYGQAKDTDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEA 473 (557)
T ss_pred HHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 99999999999999998753210 000 0 0 000 00011111111111111111 0001122
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCC-CCCCccccccchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhccc
Q 008094 480 SYILLIVAVVIAVLASAMLCLRHGYS-DPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQY 558 (578)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~ 558 (578)
+.....+...+...+....++++++. .++.||+|..|++|.++++.|++++..++..+|+.+++|+++|+++|+.|++|
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~p~~p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~ 553 (557)
T TIGR00906 474 WSIALLTLFLVLFLLVVLTIWRQPQNKQKVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIR 553 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 33333333334444444455555444 38899999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 008094 559 HADP 562 (578)
Q Consensus 559 ~~~~ 562 (578)
|+++
T Consensus 554 ~s~~ 557 (557)
T TIGR00906 554 HSLE 557 (557)
T ss_pred ccCC
Confidence 9874
No 2
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=3e-55 Score=467.13 Aligned_cols=420 Identities=20% Similarity=0.368 Sum_probs=340.7
Q ss_pred CCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHH
Q 008094 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (578)
Q Consensus 54 ~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~ 133 (578)
++++||+++.+|+.++++|.+||+|+|..++..+..+||..+++|++++++.++.+.+++||++++|+ +||.|+|+++.
T Consensus 23 ~~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~-aGg~y~y~~~~ 101 (499)
T PRK15049 23 EEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPS-SGSFVSYAREF 101 (499)
T ss_pred chhhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHH
Confidence 34599999999999999999999999999999999999988899999999999999999999999999 99999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHH
Q 008094 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (578)
Q Consensus 134 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (578)
+||..||.+||.+|++|....+......+.+...+ +.+ .+.+.| +++.+++++++.+|+
T Consensus 102 ~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~----~~~-~~~~~~----------------~~~~~~~~l~~~iN~ 160 (499)
T PRK15049 102 LGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW----GAF-GGVPQW----------------VFALAALTIVGTMNM 160 (499)
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccC-CCCcHH----------------HHHHHHHHHHHHHHH
Confidence 99999999999999998776655555555554322 111 112222 367777888999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc---ccc-----CCC------CCCCCCChHHHHHHHHHHHhhccchHHHh
Q 008094 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFE---VDV-----SNW------SPFAPNGFKEILTGATVVFFAYVGFDAVA 279 (578)
Q Consensus 214 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~-----~~~------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~ 279 (578)
+|+|..++++.+++.++++.++++++.+... .+. .++ .++.|+|+.+++.++..++|+|.|+|.++
T Consensus 161 ~gvk~~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~ 240 (499)
T PRK15049 161 IGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVG 240 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999988777766554321 110 011 13446677777778888999999999999
Q ss_pred hhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHH
Q 008094 280 NSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLL 358 (578)
Q Consensus 280 ~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (578)
+++||+|||+|++|||++.++..+.++|++..+......|++++. .++|+.+++++.+.++...++.+..+++.+++.+
T Consensus 241 ~~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~n 320 (499)
T PRK15049 241 TAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLN 320 (499)
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988775 4579999999999998889999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhh---c---CHHHHHHHHHHHHHHHHHHHHHH
Q 008094 359 VGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL---F---NVRVLSHILSVGTLTGYSVVSAC 432 (578)
Q Consensus 359 ~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~---~---~~~~l~~~~~~~~l~~y~~~~~~ 432 (578)
+.++++||++|+|||||.+|++|+|+| |+++|++|++++.++..+..++ . .++.+.++.+++.++.|.+++++
T Consensus 321 s~~~~~sR~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~ 399 (499)
T PRK15049 321 SGLYCTGRILRSMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVC 399 (499)
T ss_pred HHHHHHHHHHHHHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 8899999999888875443222 1 25778899999999999999999
Q ss_pred HhhheecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccc
Q 008094 433 VIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSC 512 (578)
Q Consensus 433 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (578)
.+++|++.++..+ .+++||+
T Consensus 400 ~l~~R~~~~~~~~------------------------------------------------------------~~~pf~~ 419 (499)
T PRK15049 400 QMRLRKAIKEGKA------------------------------------------------------------ADVSFKL 419 (499)
T ss_pred HHHHHHhhhhcCC------------------------------------------------------------CCCCCcc
Confidence 9999866433211 1567999
Q ss_pred cccchHHHHHHHHHHHHhhcC--C---HH-HHHHHHHHHHHHHHHHhhhc
Q 008094 513 PGVPLLPAVSIFFNLFLFAQL--H---YE-AWWRFVILSFISIGLYAFYG 556 (578)
Q Consensus 513 p~~p~~~~~~~~~~~~~~~~~--~---~~-~~~~~~~~~~~g~~~y~~~~ 556 (578)
|.+|+.+.++++.+++.+..+ + .. +.....++.++..+.|+..+
T Consensus 420 ~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (499)
T PRK15049 420 PGAPFTSWLTLLFLLSVLVLMAFDYPNGTYTIAALPIIGILLVIGWFGVR 469 (499)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999888776653321 1 11 23344445555566665533
No 3
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=8.3e-55 Score=462.97 Aligned_cols=425 Identities=21% Similarity=0.362 Sum_probs=346.1
Q ss_pred CCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHH
Q 008094 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (578)
Q Consensus 54 ~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~ 132 (578)
++++||+++.+++.++++|.+||+|+|..++..++.+|| +.+++|++++++.++.+++++||++++|+ +||.|.|+++
T Consensus 9 ~~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~-aGG~y~y~~~ 87 (471)
T PRK11387 9 AGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPE-TGAFHVYAAR 87 (471)
T ss_pred chhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHH
Confidence 346899999999999999999999999999999999998 68999999999999999999999999999 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHH
Q 008094 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (578)
Q Consensus 133 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (578)
.+||..||.+||.+|++|....+......+.++..+ .| +.+.| ....++.++++.+|
T Consensus 88 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~---~p----~~~~~----------------~~~~~~~~~~~~in 144 (471)
T PRK11387 88 YLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYW---FP----QVPVW----------------PWCLLFCALIFGLN 144 (471)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cC----cCcHH----------------HHHHHHHHHHHHHH
Confidence 999999999999999999888777666655554332 12 11222 24445566788999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc------c-------cCCC--CCCCCCChHHHHHHHHHHHhhccchHH
Q 008094 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV------D-------VSNW--SPFAPNGFKEILTGATVVFFAYVGFDA 277 (578)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~-------~~~~--~~~~~~g~~~~~~~~~~~~~~~~G~e~ 277 (578)
++|+|..++++.+.+.++++.++++++.+.... + .+++ +++.|++..++..++..++|+|.|+|.
T Consensus 145 ~~gvk~~~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~ 224 (471)
T PRK11387 145 VVSTRFFAEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTEL 224 (471)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHH
Confidence 999999999999999999888776666543210 0 0111 122355666788888899999999999
Q ss_pred HhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHH
Q 008094 278 VANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTT 356 (578)
Q Consensus 278 ~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (578)
+++++||+|||+||+|||++.+..++.++|++..+++....|.++.. +++|+.+++++.++++...++.+..+++.+++
T Consensus 225 ~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~ 304 (471)
T PRK11387 225 IGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSA 304 (471)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987665 46799999999999999899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhh--cC----HHHHHHHHHHHHHHHHHHHH
Q 008094 357 LLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL--FN----VRVLSHILSVGTLTGYSVVS 430 (578)
Q Consensus 357 ~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~--~~----~~~l~~~~~~~~l~~y~~~~ 430 (578)
.++.+++.||++|+|||||.+|++|+|+| |+++|++|+++..++..+..+. .+ ++.+.++.+...++.|++.+
T Consensus 305 ~~~~~~~~sR~l~a~ardg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~ 383 (471)
T PRK11387 305 ANSGLYASGRMLWSLSNEGTLPACFARLT-KRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSIC 383 (471)
T ss_pred HHHHHHHhhHHHHHHHhcCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 6799999998876654433221 11 24577788888889999999
Q ss_pred HHHhhheecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCc
Q 008094 431 ACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGF 510 (578)
Q Consensus 431 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (578)
++.+++|+++++..++. .+++|
T Consensus 384 ~~~i~lr~~~~~~~~~~----------------------------------------------------------~~~~~ 405 (471)
T PRK11387 384 ASHFMFRRRHLRDGKAL----------------------------------------------------------SELAY 405 (471)
T ss_pred HHHHHHHHHHHhcCCCC----------------------------------------------------------CCCCc
Confidence 99999998876543321 15679
Q ss_pred cccccchHHHHHHHHHHHHhhcC--CHH---HHHHHHHHHHHHHHHHhhhcccccC
Q 008094 511 SCPGVPLLPAVSIFFNLFLFAQL--HYE---AWWRFVILSFISIGLYAFYGQYHAD 561 (578)
Q Consensus 511 ~~p~~p~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~g~~~y~~~~~~~~~ 561 (578)
|.|.+|++|.++++.+++++... ++. ......+++++++..|.++++++++
T Consensus 406 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (471)
T PRK11387 406 RAPWYPLTPILGFVLCLLACVGLAFDPSQRIALWCGIPFVALCYGAYYLTQRLKRN 461 (471)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999888766533 222 2445666777888888876555433
No 4
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=4.1e-53 Score=447.28 Aligned_cols=425 Identities=20% Similarity=0.307 Sum_probs=353.4
Q ss_pred CCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHH
Q 008094 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (578)
Q Consensus 53 ~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~ 132 (578)
.++++||+++.+|+.++++|.+||+|+|..++..++.+||+.+++|++++++.++.+++++||++++|+ +||.|+|++|
T Consensus 4 ~~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~-sGg~~~y~~~ 82 (461)
T PRK10746 4 NKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPV-TGSFAVYAHR 82 (461)
T ss_pred CchHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHH
Confidence 345689999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHH
Q 008094 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (578)
Q Consensus 133 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (578)
.+||..||.+||.+|++|....+....+.+.|+..++ | +.+.| ....+++++++.+|
T Consensus 83 ~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~---p----~~~~~----------------~~~~~~~~~~~~lN 139 (461)
T PRK10746 83 YMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWF---P----EMAQW----------------IPALIAVALVALAN 139 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---C----CCchH----------------HHHHHHHHHHHHHH
Confidence 9999999999999999998888888777777876542 2 12222 35566777888899
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc-----------cccCCCC---CCCCCChHHHHHHHHHHHhhccchHHH
Q 008094 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE-----------VDVSNWS---PFAPNGFKEILTGATVVFFAYVGFDAV 278 (578)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~G~e~~ 278 (578)
++|+|..++++.+.+.+|++.++++++.++.. .+.+++. ++.|+|+.++..++..++|+|.|+|.+
T Consensus 140 ~~gv~~~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v 219 (461)
T PRK10746 140 LAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELI 219 (461)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999987776665544311 0123332 234667888999999999999999999
Q ss_pred hhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q 008094 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (578)
Q Consensus 279 ~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (578)
++.+||+|||||++|||+..+...+.++|++..+......|+++.. +++|+.+++++.+.+....++.+..+.+.+++.
T Consensus 220 ~~~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~ 299 (461)
T PRK10746 220 GITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGC 299 (461)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998876 456999999999888888888888999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHH---hhc-----CHHHHHHHHHHHHHHHHHHH
Q 008094 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILA---GLF-----NVRVLSHILSVGTLTGYSVV 429 (578)
Q Consensus 358 ~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~---~~~-----~~~~l~~~~~~~~l~~y~~~ 429 (578)
++.+++.||++++|||||.+|++|+|+| |+++|++|++++.+...+.. ... .++.+.++.+++.++.|.+.
T Consensus 300 n~~~~~~sR~l~~~a~~g~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i 378 (461)
T PRK10746 300 NSGMYSCGRMLYALAKNRQLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVI 378 (461)
T ss_pred HHHHHHHHHHHHHHHhCCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 88999999987754432211 111 14668888888889999999
Q ss_pred HHHHhhheecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 008094 430 SACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPG 509 (578)
Q Consensus 430 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (578)
+++.+++|+++++.. ++++
T Consensus 379 ~~~~i~~r~~~~~~~-------------------------------------------------------------~~~~ 397 (461)
T PRK10746 379 LISQLRFRRAHKAAI-------------------------------------------------------------ASHP 397 (461)
T ss_pred HHHHHHHHHhccccc-------------------------------------------------------------cCCC
Confidence 999999998876421 1556
Q ss_pred ccccccchHHHHHHHHHHHHhhcC--C---HHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 008094 510 FSCPGVPLLPAVSIFFNLFLFAQL--H---YEAWWRFVILSFISIGLYAFYGQYHADPS 563 (578)
Q Consensus 510 ~~~p~~p~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 563 (578)
||.|.+|+.+.++++.++..+..+ + ..+.....+++++..+.|+.|++.+|.+-
T Consensus 398 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 456 (461)
T PRK10746 398 FRSILFPWANYLTMAFLICVLIGMYFNEDTRMSLFVGIIFLLAVTLIYKVFGLNRHGKA 456 (461)
T ss_pred CcCCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Confidence 999999999998888877764432 2 23556666777888888888877765553
No 5
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=3.3e-53 Score=448.41 Aligned_cols=422 Identities=25% Similarity=0.391 Sum_probs=346.5
Q ss_pred CCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhC-cH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhH
Q 008094 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAG-PG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAY 131 (578)
Q Consensus 54 ~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G-~~-~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~ 131 (578)
++++||+++.+++++++++.++|+|+|..++.....+| |. .+++|++++++.++.+++++|+++++|+ +||.|.|++
T Consensus 3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~-~GG~y~y~~ 81 (445)
T PRK11357 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPE-NGADYVYLK 81 (445)
T ss_pred cccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCceeeHH
Confidence 45799999999999999999999999999998777655 43 8899999999999999999999999999 999999999
Q ss_pred HHhchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHH
Q 008094 132 TAFNELTAFLVFAQLM-LDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTI 210 (578)
Q Consensus 132 ~~~g~~~g~~~g~~~~-l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (578)
+.+||..||..||..+ ..+....+..+...++|+..+. |. + ......++.+++.+++.
T Consensus 82 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~---~~-----~-------------~~~~~~~~~~~~~~~~~ 140 (445)
T PRK11357 82 NAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLT---PI-----D-------------PLLGKFIAAGLIIAFML 140 (445)
T ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-----c-------------hHHHHHHHHHHHHHHHH
Confidence 9999999999999755 4455566677777777765432 20 0 01123466677777889
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCC-----CCCC-hHHHHHHHHHHHhhccchHHHhhhhhh
Q 008094 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPF-----APNG-FKEILTGATVVFFAYVGFDAVANSAEE 284 (578)
Q Consensus 211 i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~g-~~~~~~~~~~~~~~~~G~e~~~~~~~E 284 (578)
+|++|+|..+++|++++++++++++++++.+....+..++.+. ...+ +.++..++..++|+|.|+|.+++++||
T Consensus 141 ln~~gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E 220 (445)
T PRK11357 141 LHLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGE 220 (445)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHH
Confidence 9999999999999999999998887777766543333333211 1112 557788889999999999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHc--ChhHHHHHHHHHHHHHHHHHHHHHH
Q 008094 285 SKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASR--GLKYVSVLISFGAVAGLTTTLLVGL 361 (578)
Q Consensus 285 ~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (578)
+||||||+|||+..++.+++++|++.........|.+++. ++.|+.++++.. .++....++.+..+++.+++.++.+
T Consensus 221 ~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 300 (445)
T PRK11357 221 IKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCV 300 (445)
T ss_pred hcCccccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888888764 456888888764 3445556667777888899999999
Q ss_pred HHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhhheecCC
Q 008094 362 YVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDR 441 (578)
Q Consensus 362 ~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~ 441 (578)
.+.+|++|+|||||.+|++|+|+|||+++|++|++++.+++.++....+++.+.+..+....+.|.+...+.+++|+++
T Consensus 301 ~~~sR~~~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~- 379 (445)
T PRK11357 301 MYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRD- 379 (445)
T ss_pred HhhhhHHHHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCC-
Confidence 9999999999999999999999999999999999999999888777788888888888888889998888888777543
Q ss_pred CCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchHHHH
Q 008094 442 TSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAV 521 (578)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~ 521 (578)
+. +++||.|..|++|.+
T Consensus 380 ~~---------------------------------------------------------------~~~~k~p~~~~~~~~ 396 (445)
T PRK11357 380 DY---------------------------------------------------------------KPLWRTPAFGLMTTL 396 (445)
T ss_pred CC---------------------------------------------------------------CCCcccCCchHHHHH
Confidence 22 445999999999999
Q ss_pred HHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHHhhhcccccC
Q 008094 522 SIFFNLFLFA----QLHYEAWWRFVILSFISIGLYAFYGQYHAD 561 (578)
Q Consensus 522 ~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 561 (578)
+++.++++.. ..+..++....+++++|+.+|+++++|+++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 440 (445)
T PRK11357 397 AIASSLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAKRSRQ 440 (445)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhhhHHhheechhhh
Confidence 9988887753 224445667788899999999977766554
No 6
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=5e-53 Score=446.95 Aligned_cols=420 Identities=25% Similarity=0.387 Sum_probs=348.9
Q ss_pred CCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHH
Q 008094 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (578)
Q Consensus 54 ~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~ 132 (578)
++++||+++.+++.+++++.++| |.+...+..+..+|| +.++++++++++.++.+++++|+++++|+ +||.|.|+++
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~-~Gg~y~~~~~ 79 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPT-AGGGYGFARR 79 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHH
Confidence 56799999999999999999997 777777777788999 58899999999999999999999999999 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHH
Q 008094 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (578)
Q Consensus 133 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (578)
.+||..||.+||.++++|....+..+..+++|+..+++. .+.| +.+.+++++++.+|
T Consensus 80 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~-------~~~~----------------~~~~~~~~~~~~ln 136 (442)
T TIGR00908 80 AFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV-------GPGW----------------LAALVFYIVFIGIN 136 (442)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------Cchh----------------HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998766421 1122 35667777888999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCC--------CCCCCCCChHHHHHHHHHHHhhccchHHHhhhhhh
Q 008094 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSN--------WSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEE 284 (578)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E 284 (578)
++|+|..++++.+.+.++++.++++......+.+..+ .+++.|.++.+++.++..++|+|.|+|.+++++||
T Consensus 137 ~~g~~~~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE 216 (442)
T TIGR00908 137 ILGVGEAAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEE 216 (442)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888776655444332222111 12344566778888999999999999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcCh--hHHHHHHHHHHHHHHHHHHHHHH
Q 008094 285 SKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGL--KYVSVLISFGAVAGLTTTLLVGL 361 (578)
Q Consensus 285 ~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 361 (578)
+|||+||+|||++.+..++.++|+..........+.+++. .++|+.+++++..+ .+...++.+..+++.+++.++.+
T Consensus 217 ~k~P~r~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~ 296 (442)
T TIGR00908 217 TKNPKRDIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGII 296 (442)
T ss_pred hcCcccccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888777777776664 46789888887633 35556667777788889999999
Q ss_pred HHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhhheecCC
Q 008094 362 YVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDR 441 (578)
Q Consensus 362 ~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~ 441 (578)
++.+|++++|||||.+|++|+|+| |+++|++|++++.+++.++.+..+.+.+.++.+++.++.|.+.+++.+++|+++|
T Consensus 297 ~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p 375 (442)
T TIGR00908 297 YGYSRQIFALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRP 375 (442)
T ss_pred HHHHHHHHHHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999 9999999999999988777666677788888888999999999999999998876
Q ss_pred CCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchHHHH
Q 008094 442 TSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAV 521 (578)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~ 521 (578)
+. +|+||.|..|+.|.+
T Consensus 376 ~~---------------------------------------------------------------~rp~~~p~~~~~~~l 392 (442)
T TIGR00908 376 DM---------------------------------------------------------------ERPYRTPGGILTPGV 392 (442)
T ss_pred CC---------------------------------------------------------------CCCccCCCcchHHHH
Confidence 65 556999999999999
Q ss_pred HHHHHHHHhhc---CCHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 008094 522 SIFFNLFLFAQ---LHYEAWWRFVILSFISIGLYAFYGQYHADP 562 (578)
Q Consensus 522 ~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~ 562 (578)
+++.+++++.. .++..+....++.++..+.|+.|+++|.++
T Consensus 393 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 436 (442)
T TIGR00908 393 ALVLACVALVTGFYVDPRVVVGAVAIFVVLIGYYFLYSRHHLVS 436 (442)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhhhchhhc
Confidence 99988776553 366556656777777777887776665554
No 7
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=1.2e-52 Score=443.09 Aligned_cols=428 Identities=36% Similarity=0.634 Sum_probs=374.5
Q ss_pred cccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhch
Q 008094 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (578)
Q Consensus 57 l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~ 136 (578)
++|+++.+|.+++.++.++|+|++..++.....+|+..+++|++++++.++.+++++|+++++|+ +||.|.|+++.+||
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPV-AGSPYTYAYEAMGE 79 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCcceeeHHHHhCc
Confidence 57999999999999999999999999999888889988999999999999999999999999999 99999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhh
Q 008094 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (578)
Q Consensus 137 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 216 (578)
..|+++||.+++++....+..+..+++++..++... +.+.+.+.... ........+..++++++++.+|++|+
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~l~~~g~ 152 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGV---GLDLPAVLTAK----PGNGGVFNLPALLIVLFLTYILYLGA 152 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cccCchhhhcC----CcccccccHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999988776421 11112111000 00000112356778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCChHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCChhHHH
Q 008094 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGI 296 (578)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~ 296 (578)
|..+|++.+.+.++++.++++++.+..+.+..++.++.|.++.++..++...+|+|.|+|.+.+++||+|||+|++||++
T Consensus 153 ~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai 232 (429)
T TIGR00909 153 KESGKVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAI 232 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHH
Confidence 99999999999999998887777776666666777766778888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008094 297 LGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDG 375 (578)
Q Consensus 297 ~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~ 375 (578)
+.+..++.++|++..+......|.+++. ++.|+.++.++.++++...++.+..+++.+++.++.+.+.+|+++++||||
T Consensus 233 ~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg 312 (429)
T TIGR00909 233 ILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDG 312 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999888887664 456888888888889988899999999999999999999999999999999
Q ss_pred CCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhhheecCCCCCCCccccchhhh
Q 008094 376 LLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWR 455 (578)
Q Consensus 376 ~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 455 (578)
.+|++|+|+|||+++|++|+++..+++.++....+++.+.++.+...++.|++.+++.+++|+|+|+.
T Consensus 313 ~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~------------ 380 (429)
T TIGR00909 313 LLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDI------------ 380 (429)
T ss_pred CCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC------------
Confidence 99999999999999999999999998887776778899999999999999999999999999887665
Q ss_pred hhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchHHHHHHHHHHHHhhcCCH
Q 008094 456 QGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHY 535 (578)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~ 535 (578)
+|+||.|..|+++.+.+..+.++....++
T Consensus 381 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (429)
T TIGR00909 381 ---------------------------------------------------QRAFRCPLVPVLPVLVVSYCIYLLLNLGP 409 (429)
T ss_pred ---------------------------------------------------CCCCCCCcchHHHHHHHHHHHHHHHHccH
Confidence 45588899999999888888888888899
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 008094 536 EAWWRFVILSFISIGLYAFY 555 (578)
Q Consensus 536 ~~~~~~~~~~~~g~~~y~~~ 555 (578)
.++....+|.++|.++|.+|
T Consensus 410 ~~~~~~~~~~~~g~~~y~~~ 429 (429)
T TIGR00909 410 GTTVWFLVWMLLGSVFYFIY 429 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999754
No 8
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=4.9e-53 Score=447.13 Aligned_cols=364 Identities=20% Similarity=0.390 Sum_probs=311.5
Q ss_pred CCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHH
Q 008094 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (578)
Q Consensus 53 ~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~ 132 (578)
+++++||+++.+|+.++++|.++|+|+|..++..++.+||..+++|++++++.++.+++++|+++++|+ +||.|.|+++
T Consensus 15 ~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~-~Gg~~~y~~~ 93 (458)
T PRK10249 15 QEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPV-SGSFAHFAYK 93 (458)
T ss_pred CchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHH
Confidence 334799999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHH
Q 008094 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (578)
Q Consensus 133 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (578)
.+||..||.+||.+|+++....+......+.|+..+. | +.+.| .+..+++++.+.+|
T Consensus 94 ~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~---~----~~~~~----------------~~~~~~~~l~~~lN 150 (458)
T PRK10249 94 YWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWF---P----DVPTW----------------IWAAAFFIIINAVN 150 (458)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---C----cCcHH----------------HHHHHHHHHHHHHH
Confidence 9999999999999999998877777776767765432 1 11222 35677788889999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc---------cccCC-CC--CCCCCChHHHHHHHHHHHhhccchHHHhh
Q 008094 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE---------VDVSN-WS--PFAPNGFKEILTGATVVFFAYVGFDAVAN 280 (578)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---------~~~~~-~~--~~~~~g~~~~~~~~~~~~~~~~G~e~~~~ 280 (578)
++|+|..++++.+.+.+|++.++++++.++.. .+.++ ++ ++.|+|+.++..++...+|+|.|+|.+++
T Consensus 151 ~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~ 230 (458)
T PRK10249 151 LVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGI 230 (458)
T ss_pred HhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHH
Confidence 99999999999999999887666655543321 01111 11 23457888899999999999999999999
Q ss_pred hhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH
Q 008094 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLV 359 (578)
Q Consensus 281 ~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (578)
++||+|||+|++|||++.+...+.++|++..+......|+++.. +++|+.+++++.++++...++.+..+++.+++.++
T Consensus 231 ~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 310 (458)
T PRK10249 231 TAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNS 310 (458)
T ss_pred HHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888887765 35799999999988888888888889999999999
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc------CHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 360 GLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSACV 433 (578)
Q Consensus 360 ~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~------~~~~l~~~~~~~~l~~y~~~~~~~ 433 (578)
.+++.||++|+|||||.+|++|+|+| |+++|++|++++.+++.+..++. .++.+.++.+...++.|.+++.+.
T Consensus 311 ~~~~~sR~l~a~ardg~lP~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~ 389 (458)
T PRK10249 311 GVYSNSRMLFGLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAH 389 (458)
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 77999999999998877654432 246777888888999999999999
Q ss_pred hhheecCC
Q 008094 434 IALRWKDR 441 (578)
Q Consensus 434 ~~~r~~~~ 441 (578)
+++|++++
T Consensus 390 l~~r~~~~ 397 (458)
T PRK10249 390 LRFRAAMR 397 (458)
T ss_pred HHHHHHHH
Confidence 99886543
No 9
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=1.9e-52 Score=442.33 Aligned_cols=414 Identities=21% Similarity=0.337 Sum_probs=342.7
Q ss_pred CCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHH
Q 008094 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (578)
Q Consensus 54 ~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~ 133 (578)
+++++|+++.++++++++|.++|+|+|..++..... |+..+++|+++++..++.+++++||++++|+ +||.|+|+++.
T Consensus 3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~-g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~-aGG~y~~~~~~ 80 (445)
T PRK10644 3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAST-GGIAIYGWLVTIIGALGLSMVYAKMSSLDPS-PGGSYAYARRC 80 (445)
T ss_pred CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCChhHHHHHH
Confidence 345789999999999999999999999999987664 5567899999999999999999999999999 99999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHH
Q 008094 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (578)
Q Consensus 134 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (578)
+||..||++||.+|+++.............|...++ |... + +....++.++++++++.+|+
T Consensus 81 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~-------------~~~~~~~~~~~~~~~~~ln~ 141 (445)
T PRK10644 81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFF---PILK---D-------------PLVLTITCVVVLWIFVLLNI 141 (445)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccC---C-------------cHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987776666656666665443 2110 0 11223466777788999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCC-CCC---CChHHHHHHHHHHHhhccchHHHhhhhhhhcCCC
Q 008094 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP-FAP---NGFKEILTGATVVFFAYVGFDAVANSAEESKKPQ 289 (578)
Q Consensus 214 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~---~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~ 289 (578)
+|+|..+++|++.+.++++.++++.+.+....+.+++.+ +.+ .++.++..++...+|+|.|+|.+++++||+||||
T Consensus 142 ~gvk~~~~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~ 221 (445)
T PRK10644 142 VGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK 221 (445)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcc
Confidence 999999999999999998888777776654333322221 111 2455677788899999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 290 RDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 368 (578)
Q Consensus 290 k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 368 (578)
|++|||++.+..++.++|++..++...+.|++++. ++.|+.+++++..+++...++.+..+++.+++.++.+...+|++
T Consensus 222 r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~ 301 (445)
T PRK10644 222 RNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTA 301 (445)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887764 46799998888877777777888888899999999999999999
Q ss_pred HHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc-------CHHHHHHHHHHHHHHHHHHHHHHHhhheecCC
Q 008094 369 LGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-------NVRVLSHILSVGTLTGYSVVSACVIALRWKDR 441 (578)
Q Consensus 369 ~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~-------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~ 441 (578)
++|||||.+|++|+|+| |+++|++|++++.+++.++.+.. .++.+.++.+++.++.|.+++++.+++|+|++
T Consensus 302 ~a~ardg~lP~~~~~v~-~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~ 380 (445)
T PRK10644 302 KAAADDGLFPPIFARVN-KAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_pred HHHHhCCCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999 57999999999999877655431 26678888888899999999999999887754
Q ss_pred CCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchHHHH
Q 008094 442 TSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAV 521 (578)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~ 521 (578)
+ ++.|..|++|.+
T Consensus 381 ~-------------------------------------------------------------------~~~p~~~~~~~~ 393 (445)
T PRK10644 381 G-------------------------------------------------------------------KARPAYLAVTLI 393 (445)
T ss_pred c-------------------------------------------------------------------ccccchhHHHHH
Confidence 2 222456789999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhc
Q 008094 522 SIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYG 556 (578)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~ 556 (578)
+++.|++++...+.++.....++++++..+|++.+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 428 (445)
T PRK10644 394 AFVYCIWAVVGSGAKEVMWSFVTLMVITAFYALNY 428 (445)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887787777777788888888886443
No 10
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-53 Score=428.11 Aligned_cols=423 Identities=21% Similarity=0.345 Sum_probs=362.3
Q ss_pred CcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHh
Q 008094 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (578)
Q Consensus 56 ~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~ 134 (578)
++||+|+.+|+.++++|..||+|+|...|..+.++|| +.++++++.+++.++++.+.+||+..+|. +|+...|++|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~-sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPV-SGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCchhhhhhhhc
Confidence 6999999999999999999999999999999999999 69999999999999999999999999998 999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHh
Q 008094 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (578)
Q Consensus 135 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (578)
+|.+||..||.||+.|....+....+.+..++.+.. +..+.| ++..++++++..+|..
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p------~~v~~~----------------~w~~iF~~~i~~iN~~ 177 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFP------DTVPPW----------------IWIAIFLVLIFLLNLF 177 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcC------CCCChH----------------HHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998888877642 112333 4788899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhccc----------ccCCCC--CCCCCChHHHHHHHHHHHhhccchHHHhhhh
Q 008094 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEV----------DVSNWS--PFAPNGFKEILTGATVVFFAYVGFDAVANSA 282 (578)
Q Consensus 215 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------~~~~~~--~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~ 282 (578)
++|..+..+.++..+|++.++.+++.++... ....|+ ...++|+.++...+..+.|+|.|.|.+...+
T Consensus 178 ~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaA 257 (541)
T COG0833 178 GVKGFGETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAA 257 (541)
T ss_pred cccccceehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeee
Confidence 9999999999999999999888887765421 112232 2347789999999999999999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC---------CCChHHHHHHHcChhHHHHHHHHHHHHHH
Q 008094 283 EESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD---------EDAPLSDAFASRGLKYVSVLISFGAVAGL 353 (578)
Q Consensus 283 ~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~---------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (578)
+|.|||+|++|||+......+.++|++..+.+...+|+++-+ ..+|+..++++.|.+.+..+++..++.+.
T Consensus 258 gEs~nP~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~sv 337 (541)
T COG0833 258 GESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSV 337 (541)
T ss_pred cccCCchhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987521 34699999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc------CHHHHHHHHHHHHHHHHH
Q 008094 354 TTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYS 427 (578)
Q Consensus 354 ~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~------~~~~l~~~~~~~~l~~y~ 427 (578)
+++.|+.++++||++|+||+||..||+|+|+| |+|+|.+|++.+.+++.+-.+-. .++++.+++++..++.|+
T Consensus 338 lSa~NS~lYasSR~L~sLA~~g~APk~f~~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~ 416 (541)
T COG0833 338 LSAANSGLYASSRMLYSLAKQGKAPKIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWG 416 (541)
T ss_pred HHHhhccchHHHHHHHHHHhcCCCchHHHhhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 88999999998888866543322 257899999999999999
Q ss_pred HHHHHHhhheecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 008094 428 VVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDP 507 (578)
Q Consensus 428 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (578)
..+++.+++|+..+...+. .++
T Consensus 417 ~I~~shirFR~A~~~QG~s----------------------------------------------------------~~~ 438 (541)
T COG0833 417 SICLSHIRFRRAMKAQGRS----------------------------------------------------------LDE 438 (541)
T ss_pred HHHHHHHHHHHHHHHcCCC----------------------------------------------------------hhh
Confidence 9999999999775543332 237
Q ss_pred CCccccccchHHHHHHHHHHHHhhcCCH----------HHHHHHHHHHHHHHHHHhhhccccc
Q 008094 508 PGFSCPGVPLLPAVSIFFNLFLFAQLHY----------EAWWRFVILSFISIGLYAFYGQYHA 560 (578)
Q Consensus 508 ~~~~~p~~p~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~g~~~y~~~~~~~~ 560 (578)
.+||.|.+|+.|+++++.|..++...++ ..+...-+-+-+.+++|..|+.++|
T Consensus 439 L~yks~~~p~g~~~~~~~~~li~i~q~y~af~p~~~~~~~F~~~Yl~~pi~i~~y~~yk~~~k 501 (541)
T COG0833 439 LPYKSPFGPYGPIYGLILCILILIGQGYVAFFPIGFSAGDFFAAYLGLPIFIAIYIGYKLYKK 501 (541)
T ss_pred cCccCCCccHHHHHHHHHHHHHHHHcchheeecCCccHHHHHHHHHHHHHHHHHHHHheeEec
Confidence 8899999999999999999998776422 2233333334455556666655544
No 11
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=1.9e-52 Score=442.01 Aligned_cols=420 Identities=20% Similarity=0.309 Sum_probs=347.5
Q ss_pred cccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhch
Q 008094 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (578)
Q Consensus 57 l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~ 136 (578)
+||+++.+++++++++.++|+|+|..++... .+|+..+++|++++++.++.+++|+|+++++|+ +||.|.|+++.+||
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~-~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~-~GG~y~y~~~~~G~ 81 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA-QVGTISILSWLVTAVGSMALAYAFAKCGMFSRK-SGGMGGYAEYAFGK 81 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CCchHHHHHHHcCc
Confidence 5788999999999999999999999988754 578888999999999999999999999999999 99999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhh
Q 008094 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (578)
Q Consensus 137 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 216 (578)
..||++||.+|+++.......+.....|+..++ |. +. +.....++.++++++.+.+|++|+
T Consensus 82 ~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~---~~---~~-------------~~~~~~~~~~~~l~~~~~ln~~g~ 142 (438)
T PRK10655 82 SGNFMANYTYGVSLLIANVAIAISAVGYGTELF---GA---TL-------------SPVQICLATIGVLWLCTVANFGGA 142 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cc---cc-------------chHHHHHHHHHHHHHHHHHHHhCH
Confidence 999999999999998877666666777776543 21 00 111233466677788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC-CCCCCC---hHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCCh
Q 008094 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS-PFAPNG---FKEILTGATVVFFAYVGFDAVANSAEESKKPQRDL 292 (578)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~g---~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~i 292 (578)
|..+++|++.+..+++.++++.+.+....+.+++. ++.|++ +.++..++..++|+|.|+|.+++++||+|||+||+
T Consensus 143 ~~~~~i~~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~i 222 (438)
T PRK10655 143 RITGQISSVTVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNV 222 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccc
Confidence 99999999999988888777777665544444442 233333 35677788889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 293 PIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 371 (578)
Q Consensus 293 p~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 371 (578)
|||++.+..+++++|++.........|++++. +++|..+++++..+++...++.+..+++.+++.++.+.+.+|++++|
T Consensus 223 PrAi~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~ 302 (438)
T PRK10655 223 PIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSS 302 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888887764 46788888888877877778888888899999999999999999999
Q ss_pred hhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc-------CHHHHHHHHHHHHHHHHHHHHHHHhhheecCCCCC
Q 008094 372 GRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSR 444 (578)
Q Consensus 372 a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~-------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~ 444 (578)
+|||.+|++|+|+| |+++|++|++++.+++.++.+.. +++.+.++.++..++.|.+.+++.+++|+|+++.
T Consensus 303 a~dg~lP~~~~~v~-~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~- 380 (438)
T PRK10655 303 ADEGYFPKIFSRVT-KVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVP- 380 (438)
T ss_pred hcCCchhHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-
Confidence 99999999999999 67999999999988776554432 3567888888899999999999999999887654
Q ss_pred CCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchHHHHHHH
Q 008094 445 NDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIF 524 (578)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~ 524 (578)
+|+||.| +++|.++.+
T Consensus 381 --------------------------------------------------------------~~~~~~~--~~~~~~~~~ 396 (438)
T PRK10655 381 --------------------------------------------------------------PSKAKVA--NFIAFVGAL 396 (438)
T ss_pred --------------------------------------------------------------cchhHHH--HHHHHHHHH
Confidence 2335554 477888888
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 008094 525 FNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADPS 563 (578)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 563 (578)
.+++.+...+.++.....+++++|+++|.++.+|+.+++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 435 (438)
T PRK10655 397 YSFYALYSSGEEAMLYGSIVTFLGWTLYGLISPRFELKN 435 (438)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 877776666666677778899999999987766655543
No 12
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=2.4e-52 Score=445.89 Aligned_cols=399 Identities=22% Similarity=0.339 Sum_probs=323.3
Q ss_pred CCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhH
Q 008094 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAY 131 (578)
Q Consensus 53 ~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~ 131 (578)
+++++||+++.+|+.++++|.+||+|+|..++.+++.+||. .+++|+++++++++.+++|+||++++|+ +||.|.|++
T Consensus 9 ~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~-sGg~y~y~~ 87 (489)
T PRK10836 9 EAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPV-SGSFATYGQ 87 (489)
T ss_pred CcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHH
Confidence 45679999999999999999999999999999999999995 8999999999999999999999999999 999999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHH
Q 008094 132 TAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIV 211 (578)
Q Consensus 132 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (578)
+.+||..||.+||.+|+.+....+........++..+ .| +.+.| ....+++++++.+
T Consensus 88 ~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~---~~----~~~~~----------------~~~~~~~~~~~~l 144 (489)
T PRK10836 88 NYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWW---FP----DTPGW----------------IWSALFLGVIFLL 144 (489)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CC----CCchH----------------HHHHHHHHHHHHH
Confidence 9999999999999999987766554333333333221 11 11111 2455667778899
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc------c----ccCCCCC---CCCCChHHHHHHHHHHHhhccchHHH
Q 008094 212 LCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE------V----DVSNWSP---FAPNGFKEILTGATVVFFAYVGFDAV 278 (578)
Q Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~----~~~~~~~---~~~~g~~~~~~~~~~~~~~~~G~e~~ 278 (578)
|++|+|..+++|.+++..|+..++.+++.++.. . +.+++.+ ..++++.++..+....+|+|.|+|.+
T Consensus 145 N~~gv~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~ 224 (489)
T PRK10836 145 NYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELI 224 (489)
T ss_pred HHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHH
Confidence 999999999999999999987766655443321 1 1123321 12346666666666778999999999
Q ss_pred hhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC---------CCChHHHHHHHcChhHHHHHHHHHH
Q 008094 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD---------EDAPLSDAFASRGLKYVSVLISFGA 349 (578)
Q Consensus 279 ~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~---------~~~p~~~~~~~~~~~~~~~~~~~~~ 349 (578)
++++||+||||||+|||++.++..+.++|++.........|.++.+ ..+|+.+++.+.+.+....++.+..
T Consensus 225 ~~~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~i 304 (489)
T PRK10836 225 GIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVI 304 (489)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHH
Confidence 9999999999999999999999999999999999998888865321 1368888899888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcC------HHHHHHHHHHHHH
Q 008094 350 VAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFN------VRVLSHILSVGTL 423 (578)
Q Consensus 350 ~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~------~~~l~~~~~~~~l 423 (578)
+++.+++.++.+++.||++|+|||||.+|++|+|+| |+++|++|++++.+++.+..+... ++.+.++.+++.+
T Consensus 305 l~a~~~~~n~~~~~~sR~l~a~Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~ 383 (489)
T PRK10836 305 LTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGF 383 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 679999999999988776554321 3457788888889
Q ss_pred HHHHHHHHHHhhheecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccC
Q 008094 424 TGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHG 503 (578)
Q Consensus 424 ~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (578)
+.|++.+++.+++||+.+++.++.
T Consensus 384 ~~y~~~~~a~l~~R~~~~~~~~~~-------------------------------------------------------- 407 (489)
T PRK10836 384 IAWLGIAISHYRFRRGYVLQGHDL-------------------------------------------------------- 407 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCc--------------------------------------------------------
Confidence 999999999999887632221110
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHhhcCC
Q 008094 504 YSDPPGFSCPGVPLLPAVSIFFNLFLFAQLH 534 (578)
Q Consensus 504 ~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~ 534 (578)
++++||.|.+|+.|.++++.|++++....
T Consensus 408 --~~~p~~~p~~p~~~~~~~~~~~~~~~~~~ 436 (489)
T PRK10836 408 --NDLPYRSGFFPLGPIFAFVLCLIITLGQN 436 (489)
T ss_pred --CCCCCcCCCccHHHHHHHHHHHHHHHHHH
Confidence 13679999999999999999998877543
No 13
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=3.8e-52 Score=440.10 Aligned_cols=366 Identities=22% Similarity=0.433 Sum_probs=313.8
Q ss_pred CCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHH
Q 008094 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (578)
Q Consensus 53 ~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~ 132 (578)
.++++||+++.+|+.+++++.+||+|+|..++..++.+||..+++|++++++.++.+++++|+++++|. +||.|+|+++
T Consensus 6 ~~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~-aGg~y~~~~~ 84 (456)
T PRK10238 6 HGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPV-AGSFSHFAYK 84 (456)
T ss_pred cchhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHH
Confidence 445799999999999999999999999999999999999998999999999999999999999999999 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHH
Q 008094 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (578)
Q Consensus 133 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (578)
.+||..||.+||.++++|....++.....++++..+. | +.+.| ....+++++...+|
T Consensus 85 ~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~---p----~~~~~----------------~~~~i~~~~~~~lN 141 (456)
T PRK10238 85 YWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWY---P----EIPTW----------------VSAAVFFVVINAIN 141 (456)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C----cCcHH----------------HHHHHHHHHHHHHH
Confidence 9999999999999999999998888888888876542 2 22223 35666777889999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhc---cc------ccCC-C--CCCCCCChHHHHHHHHHHHhhccchHHHhh
Q 008094 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAF---EV------DVSN-W--SPFAPNGFKEILTGATVVFFAYVGFDAVAN 280 (578)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~------~~~~-~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~ 280 (578)
++|+|..++++.+.+.+++..++++++.++. .. ...+ + .++.|+|+.++..++..+.|+|.|+|.+++
T Consensus 142 ~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~ 221 (456)
T PRK10238 142 LTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGI 221 (456)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999998877665543321 10 0111 1 124466777888888889999999999999
Q ss_pred hhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH
Q 008094 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLV 359 (578)
Q Consensus 281 ~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (578)
++||+|||+|++|||+..+...+.+.|+..........|++++. +++|+.+++++.+.+....++.+..+.+.+++.++
T Consensus 222 ~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~ 301 (456)
T PRK10238 222 TAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNS 301 (456)
T ss_pred HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888887778888765 45799999999988888888888899999999999
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc------CHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 360 GLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSACV 433 (578)
Q Consensus 360 ~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~------~~~~l~~~~~~~~l~~y~~~~~~~ 433 (578)
.+++.||++|+|||||.+|++|+|+| |+++|++|++++.+++.+..++. .++.+.++.+.+.++.|.++.++.
T Consensus 302 ~~~~~sR~l~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~ 380 (456)
T PRK10238 302 CVYCNSRMLFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAH 380 (456)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 67999999999999876654431 246778888888899999999999
Q ss_pred hhheecCCCC
Q 008094 434 IALRWKDRTS 443 (578)
Q Consensus 434 ~~~r~~~~~~ 443 (578)
+++||++++.
T Consensus 381 l~~r~~~~~~ 390 (456)
T PRK10238 381 MKFRRAKQEQ 390 (456)
T ss_pred HHHHHHHHhc
Confidence 9999876654
No 14
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=6e-52 Score=439.68 Aligned_cols=368 Identities=23% Similarity=0.365 Sum_probs=311.7
Q ss_pred CCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHH
Q 008094 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (578)
Q Consensus 53 ~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~ 132 (578)
.+.++||+|+.+|+.+++++.+||+|+|..++..++.+||..+++|++++++.++.+++++||++++|+ +||.|.|+++
T Consensus 6 ~~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~-~Gg~~~~~~~ 84 (452)
T TIGR01773 6 SGLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPD-TGSFSTYADD 84 (452)
T ss_pred chHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHH
Confidence 355689999999999999999999999999999999999988899999999999999999999999999 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHH
Q 008094 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (578)
Q Consensus 133 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (578)
.+||..||.+||.+|++|....++.+...+.++..++ | +.+.| +++.+++++...+|
T Consensus 85 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~~~~----------------~~~~~~~~~~~~~n 141 (452)
T TIGR01773 85 AIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWF---P----DIPLW----------------LFSLILTIVLTLTN 141 (452)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C----cCcHH----------------HHHHHHHHHHHHHH
Confidence 9999999999999999999998888888888877543 2 12222 46777888889999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc---c----cc---CCC---CCCCCCChHHHHHHHHHHHhhccchHHHh
Q 008094 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE---V----DV---SNW---SPFAPNGFKEILTGATVVFFAYVGFDAVA 279 (578)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~----~~---~~~---~~~~~~g~~~~~~~~~~~~~~~~G~e~~~ 279 (578)
++|+|..++++.+.+.++++.++++++.+... . +. +++ .++.|+|+.++..++..++|+|.|+|.++
T Consensus 142 ~~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~ 221 (452)
T TIGR01773 142 LYSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVT 221 (452)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHh
Confidence 99999999999999999988776665544321 0 11 111 12346677789999999999999999999
Q ss_pred hhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC--CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q 008094 280 NSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD--EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (578)
Q Consensus 280 ~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (578)
+++||+|||+||+|||+..+...+.++|++.........|+++.+ ++.|+.++.+..+++....++.+..+++.+++.
T Consensus 222 ~~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~ 301 (452)
T TIGR01773 222 IAAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCL 301 (452)
T ss_pred HHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888777766433 334888888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc--C----HHHHHHHHHHHHHHHHHHHHH
Q 008094 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF--N----VRVLSHILSVGTLTGYSVVSA 431 (578)
Q Consensus 358 ~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~--~----~~~l~~~~~~~~l~~y~~~~~ 431 (578)
++.+++.||++++|||||.+|++|+|+| |+++|++|++++.+++.+..+.. + ++.+.++.+...++.|.+..+
T Consensus 302 ~~~~~~~sR~~~a~ardg~lP~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~ 380 (452)
T TIGR01773 302 NSALYTTSRMLYSLAERGDAPRVFMKLN-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAV 380 (452)
T ss_pred HHHHHHHHHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 78999999999888876654432 2 345666777778899999999
Q ss_pred HHhhheecCCCCCC
Q 008094 432 CVIALRWKDRTSRN 445 (578)
Q Consensus 432 ~~~~~r~~~~~~~~ 445 (578)
+.+++|+++++.+|
T Consensus 381 ~~i~~r~~~~~~~~ 394 (452)
T TIGR01773 381 SQLRMRKKLKANGE 394 (452)
T ss_pred HHHHHHHHHHhcCC
Confidence 99998887665433
No 15
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=1.6e-51 Score=436.53 Aligned_cols=419 Identities=20% Similarity=0.348 Sum_probs=343.4
Q ss_pred CCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHH
Q 008094 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (578)
Q Consensus 53 ~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~ 132 (578)
+++++||+++.+|+.++++|.++|+|+|..++...+.+||..+++|++++++.++.+++++|+++++|+ +||.|.|+++
T Consensus 3 ~~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~-~Gg~y~y~~~ 81 (457)
T PRK10580 3 SKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPA-ASSFSRYAQE 81 (457)
T ss_pred CCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHH
Confidence 346789999999999999999999999999999999999988999999999999999999999999999 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHH
Q 008094 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (578)
Q Consensus 133 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (578)
.+||..||++||.+++++....+......+.|+..+. | +.+.+ ...++++++...+|
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~----------------~~~~~~~~l~~~ln 138 (457)
T PRK10580 82 NLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWF---P----TVPHW----------------IWVLSVVLIICAVN 138 (457)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---C----CCChH----------------HHHHHHHHHHHHHH
Confidence 9999999999999999998777776677777765442 2 12222 24556677788999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhc-------cc-ccC---C-CC--CCCCCChHHHHHHHHHHHhhccchHHH
Q 008094 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAF-------EV-DVS---N-WS--PFAPNGFKEILTGATVVFFAYVGFDAV 278 (578)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~-------~~-~~~---~-~~--~~~~~g~~~~~~~~~~~~~~~~G~e~~ 278 (578)
++|+|..+++|.+++.+++..++++++.++. .. +.. + ++ ++.|+++.+++.++..++|+|.|+|.+
T Consensus 139 ~~gv~~~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~ 218 (457)
T PRK10580 139 LMSVKVFGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEII 218 (457)
T ss_pred HccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHH
Confidence 9999999999999999998877766544321 10 111 1 21 234667778888999999999999999
Q ss_pred hhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q 008094 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (578)
Q Consensus 279 ~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (578)
++++||+|||+|++|||++.+...+.++|++..+......|.+++. .++|+.+.++..+.++...++.+..+.+.+++.
T Consensus 219 ~~~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 298 (457)
T PRK10580 219 GITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAI 298 (457)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988888888765 456888888888888888888888888999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhh---cC---HHHHHHHHHHHHHHHHHHHHH
Q 008094 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL---FN---VRVLSHILSVGTLTGYSVVSA 431 (578)
Q Consensus 358 ~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~---~~---~~~l~~~~~~~~l~~y~~~~~ 431 (578)
++.+++.||++++|||||.+|++|+|+| |+++|++|++++.++..+...+ .+ ++.+.++.+...++.|.+.++
T Consensus 299 ~~~~~~~sR~~~~~ardg~lP~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~ 377 (457)
T PRK10580 299 NSDVFGVGRMLHGMAEQGSAPKIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILL 377 (457)
T ss_pred HHHHHHHHHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 6799999998887654432222 12 457888888888999999999
Q ss_pred HHhhheecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCcc
Q 008094 432 CVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFS 511 (578)
Q Consensus 432 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (578)
+.+++|+++++... ++++||
T Consensus 378 ~~~~lr~~~~~~~~------------------------------------------------------------~~~~f~ 397 (457)
T PRK10580 378 SQIAFRRRLPPEEV------------------------------------------------------------KALKFK 397 (457)
T ss_pred HHHHHHHHHHhcCC------------------------------------------------------------CCCCcc
Confidence 99999977544321 145689
Q ss_pred ccccchHHHHHHHHHHHHhhcC-----CHHHHHHHHHHHHHHHHHHhhhc
Q 008094 512 CPGVPLLPAVSIFFNLFLFAQL-----HYEAWWRFVILSFISIGLYAFYG 556 (578)
Q Consensus 512 ~p~~p~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~y~~~~ 556 (578)
.|..|+.+.++++.+.+++..+ +..+.....++++++.+.|..++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~ 447 (457)
T PRK10580 398 VPGGVATTIGGLIFLVFIIGLIGYHPDTRISLYVGFAWIVLLLIGWMFKR 447 (457)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9988999998888887754432 23345677788888888888654
No 16
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=4.9e-51 Score=433.53 Aligned_cols=366 Identities=18% Similarity=0.336 Sum_probs=310.0
Q ss_pred CCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHH
Q 008094 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (578)
Q Consensus 54 ~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~ 133 (578)
++++||+++.+++.++++|.+||+|+|..++.+++.+||+.+++|++++++.++.+.+++|+++..|. .|+.|.|+++.
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~-~~~~~~ya~~~ 93 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLE-YKSFSDFASDL 93 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHH
Confidence 35699999999999999999999999999999999999988999999999999999999999999999 89999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHH
Q 008094 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (578)
Q Consensus 134 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (578)
+||..||++||.+++++....++.+...+.|+..++ |. .+.| ..+.+++++++.+|+
T Consensus 94 ~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~---p~----~~~~----------------~~~~~~~~~~~~iN~ 150 (469)
T PRK11049 94 LGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWF---PD----LSDW----------------VASLAVVLLLLSLNL 150 (469)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC----CcHH----------------HHHHHHHHHHHHHHH
Confidence 999999999999999998777777777777776542 21 1111 345567778889999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc-----cc----CCCC------CCCCCChHHHHHHHHHHHhhccchHHH
Q 008094 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-----DV----SNWS------PFAPNGFKEILTGATVVFFAYVGFDAV 278 (578)
Q Consensus 214 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~----~~~~------~~~~~g~~~~~~~~~~~~~~~~G~e~~ 278 (578)
+|+|..+++|++.+.+++..++++++.++... +. .++. ++.|+|+.++..++...+|+|.|+|.+
T Consensus 151 ~g~~~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~ 230 (469)
T PRK11049 151 ATVKMFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELV 230 (469)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHH
Confidence 99999999999999999988888777655321 00 1111 234667778999999999999999999
Q ss_pred hhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q 008094 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (578)
Q Consensus 279 ~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (578)
++++||+|||+||+|||+..+.+.+.++|++.........|++++. .++|+.+.++..++++...++.+..+++.+++.
T Consensus 231 ~~~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~ 310 (469)
T PRK11049 231 GTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSA 310 (469)
T ss_pred HHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888889999999999998888888775 457999998888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHH---hhc-C----HHHHHHHHHHHHHHHHHHH
Q 008094 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILA---GLF-N----VRVLSHILSVGTLTGYSVV 429 (578)
Q Consensus 358 ~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~---~~~-~----~~~l~~~~~~~~l~~y~~~ 429 (578)
++.+++.||++|+|||||.+|++|+|+| |+++|++|++++.++..+.. ... + ++.+.++.++...+.|.+.
T Consensus 311 ~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~ 389 (469)
T PRK11049 311 NSGVFSTSRMLFGLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTII 389 (469)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 55999999988877544311 111 2 4567777777888999999
Q ss_pred HHHHhhheecCCCCC
Q 008094 430 SACVIALRWKDRTSR 444 (578)
Q Consensus 430 ~~~~~~~r~~~~~~~ 444 (578)
.++.+++|+++|+..
T Consensus 390 ~~a~~~lr~~~p~~~ 404 (469)
T PRK11049 390 LCSYLVYRKQRPHLH 404 (469)
T ss_pred HHHHHHHHHhhhhcC
Confidence 999999998877653
No 17
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=5e-51 Score=429.66 Aligned_cols=412 Identities=19% Similarity=0.258 Sum_probs=336.1
Q ss_pred CcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhc
Q 008094 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (578)
Q Consensus 56 ~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g 135 (578)
+.+|+++.++++++++|.++|+|+|..++... .+||..+++|+++++.+++.+++++||++++|+ +||.|.|++| +|
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a-~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~-~GG~y~y~~~-~g 78 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLA-SIGSIAIWGWIISIIGAMSLAYVYARLATKNPQ-QGGPIAYAGE-IS 78 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCChhHHHHH-HC
Confidence 35789999999999999999999999999865 578889999999999999999999999999999 9999999999 89
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhh
Q 008094 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (578)
Q Consensus 136 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 215 (578)
|.+||.+||.+|.+.+......+.....|+..++ |...++ ....+++.+++++.+++|++|
T Consensus 79 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~---p~~~~~----------------~~~~~~~~~i~~~~~~ln~~g 139 (435)
T PRK10435 79 PAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFF---PVLNDP----------------IPAGIACIAIVWVFTFVNMLG 139 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cccCCh----------------HHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998776666677777777776543 321111 112245666777889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC----CCCCCCCCChHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCC
Q 008094 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVS----NWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRD 291 (578)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ 291 (578)
+|..++++.+.+++++++++.+.+.+..+.+.+ +|.+..+.++.++..++..++|+|.|+|.+++++||+||||||
T Consensus 140 vk~~~~i~~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~ 219 (435)
T PRK10435 140 GTWVSRLTTIGLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRT 219 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcccc
Confidence 999999999998888877666655554433322 3433334567789999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 292 LPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (578)
Q Consensus 292 ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 370 (578)
+|||++.+..++.++|++..+......|.++++ .++|+.+++++.++++...++.+..+++++++.++.++..+|..++
T Consensus 220 iPrAi~~~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~ 299 (435)
T PRK10435 220 VPLATMLGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVR 299 (435)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988874 5679999999888888888888888999999999999999999999
Q ss_pred HhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhh----c--------CHHHHHHHHHHHHHHHHHHHHHHHhhhee
Q 008094 371 LGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL----F--------NVRVLSHILSVGTLTGYSVVSACVIALRW 438 (578)
Q Consensus 371 ~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~----~--------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~ 438 (578)
|||||.+||+|+|+| |+++|++|++++.++..++... . .++.+.++.+...++.|++.+++.+++|+
T Consensus 300 ~ardG~lP~~f~k~n-k~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~~ 378 (435)
T PRK10435 300 AANDGNFPKVYGEVD-KNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFEG 378 (435)
T ss_pred HHhCCCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999 7899999999988776543321 1 24678888888889999999999875542
Q ss_pred cCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchH
Q 008094 439 KDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLL 518 (578)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~ 518 (578)
++ +|.+..|++
T Consensus 379 --~~-------------------------------------------------------------------~~~~~~~~~ 389 (435)
T PRK10435 379 --VN-------------------------------------------------------------------IRNFVSLIC 389 (435)
T ss_pred --Cc-------------------------------------------------------------------hhHHHHHHH
Confidence 11 222223566
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 008094 519 PAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADP 562 (578)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~ 562 (578)
+.++.+.+++.+. ..+|..+..+++++.+.|+.|++||.++
T Consensus 390 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (435)
T PRK10435 390 SVLGCVFCFIALM---GASSFELAGTFIVSLIILMFYARKMHER 430 (435)
T ss_pred HHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 6666666666555 3457788888899999999898777554
No 18
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-52 Score=439.30 Aligned_cols=489 Identities=31% Similarity=0.512 Sum_probs=379.3
Q ss_pred CCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc-cchhhhhH
Q 008094 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVV-GGAYLYAY 131 (578)
Q Consensus 54 ~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~-GG~y~~~~ 131 (578)
++++||+|+.+|+.++++|..||+|+|...|.++..+|| +.+++++++++.+++.+++++|++.++|. + ||.|.|++
T Consensus 25 ~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~-~aGs~~~ya~ 103 (554)
T KOG1286|consen 25 ETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPV-SAGSFYTYAY 103 (554)
T ss_pred cchhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheeccc-ccccceeeee
Confidence 368999999999999999999999999999999988777 79999999999999999999999999998 6 99999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHH-HHHHHHH
Q 008094 132 TAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPI-LLALLTI 210 (578)
Q Consensus 132 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 210 (578)
+.+||.+||.+||.+++.|+++.++++.+.+.++..+.. ........+ +..........++++ ++.++.+
T Consensus 104 ~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~-~~~~~~~~~--------~~~~~~~~~~fla~~v~in~~gv 174 (554)
T KOG1286|consen 104 RFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG-ASLIGILVD--------TVNPGGWIPDFLAFILIINLFGV 174 (554)
T ss_pred eeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-ccccccccc--------CCCCCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999851 000000000 000001111122222 2333333
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC---------CCCCCChHHHHHHHHHHHhhccchHHHhhh
Q 008094 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS---------PFAPNGFKEILTGATVVFFAYVGFDAVANS 281 (578)
Q Consensus 211 i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~ 281 (578)
..+.+.+.....+++++.+.++++.+++.+|....|..+|. .|.|.|+.+++.++..+.|+|.|+|.++..
T Consensus 175 ~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~ 254 (554)
T KOG1286|consen 175 LAYGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATT 254 (554)
T ss_pred hhccceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHH
Confidence 33366777888899999999888888888888776655553 277888999999999999999999999999
Q ss_pred hhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccc--cCCCChHHHHHH-HcCh---hHHHHHHHHHHHHHHHH
Q 008094 282 AEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKF--LDEDAPLSDAFA-SRGL---KYVSVLISFGAVAGLTT 355 (578)
Q Consensus 282 ~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~--~~~~~p~~~~~~-~~~~---~~~~~~~~~~~~~~~~~ 355 (578)
+||+|||||++|+|+..++.++.++|++..+.+...+|+++ ++++.|....+. ..+. +.+..++++.+++++.+
T Consensus 255 a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s 334 (554)
T KOG1286|consen 255 AEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLS 334 (554)
T ss_pred HHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999987 777665555555 4444 44445999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCH------HHHHHHHHHHHHHHHHHH
Q 008094 356 TLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNV------RVLSHILSVGTLTGYSVV 429 (578)
Q Consensus 356 ~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~------~~l~~~~~~~~l~~y~~~ 429 (578)
++|+.+++++|.+++||+||.+||+|+++|+| |+|++|++.+.+++.+..+..+. +++.++.+++.++.|.++
T Consensus 335 ~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i 413 (554)
T KOG1286|consen 335 SLNSSLYAGSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLV 413 (554)
T ss_pred HHHHHhHHhHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999966 99999999999998888777766 999999999999999999
Q ss_pred HHHHhhheecCCCCC-----CCccccchhhhh---hHHHHHHHHHhhhhcchhhc--cchhHHH---HHHHHHHHHHHHH
Q 008094 430 SACVIALRWKDRTSR-----NDSSRLTSAWRQ---GVICLIIIACCGFGAGLFYR--INASYIL---LIVAVVIAVLASA 496 (578)
Q Consensus 430 ~~~~~~~r~~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~ 496 (578)
+++++++|+..++.. .+++.+..++.. ...+...+....++.+.... ++.+... +...+.++..+.+
T Consensus 414 ~~~~i~~R~a~~~q~~~~~~~~~~s~~~~~gs~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~yl~~~i~l~~~i~~ 493 (554)
T KOG1286|consen 414 ALSHLRFRYAMKVQGRSLDELPYKSPTGPYGSYYGLLVNILILLAQFYVAFFPIGSEFSAWGFFEAYLGLPILLIFYIGY 493 (554)
T ss_pred HHHHeeeeecccccCCCcccccccCCCCCchhHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998754332 122222223332 23344444444444444433 3333222 2223233333333
Q ss_pred HHHhccCCCCCCCccccccchHHHHHHHHHHHHhhcCCHHHHH--HHHHHHHHHHHHHhh-hcccccC
Q 008094 497 MLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWW--RFVILSFISIGLYAF-YGQYHAD 561 (578)
Q Consensus 497 ~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~y~~-~~~~~~~ 561 (578)
..++|.+.. ..|+.|.+.+..+..++..++.++|. ....|...+...|.+ |+.+|..
T Consensus 494 ~i~~~~~~~--------~vp~~~~idl~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 553 (554)
T KOG1286|consen 494 KIYAKPTNT--------LVPLSPCIDLDTNIYLMDSLDAETWIEERFEVWLEIGLLIYFFWYGIRHSK 553 (554)
T ss_pred heeeccccc--------ccCCccceEEEecceeeccccchhhhhhhHHHHhhhhhHHHHHhhhhhccc
Confidence 333333322 45677777778888888888888899 999999999999987 7777754
No 19
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-51 Score=407.49 Aligned_cols=421 Identities=23% Similarity=0.360 Sum_probs=363.4
Q ss_pred CCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHH
Q 008094 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (578)
Q Consensus 53 ~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~ 132 (578)
+++++||.|+.+|...+++|..||+|+|...+...+.+||+.+++++++|++.+.+.-.++||...-|+ +|+.-+|+++
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~-~gSF~~~a~~ 85 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPV-SGSFSDYARK 85 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCcHHHHHHH
Confidence 456799999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHH
Q 008094 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (578)
Q Consensus 133 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (578)
.+||..||.+||.||+.|+....+...+.+.|++.++. +.|.| +.+++.+++...+|
T Consensus 86 ~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP-------~vP~W----------------v~al~~~~l~~~~N 142 (462)
T COG1113 86 YLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFP-------DVPQW----------------VFALAAVVLLLAVN 142 (462)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCcHH----------------HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998853 34666 47888899999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc-----------cccCCC---CCCCCCChHHHHHHHHHHHhhccchHHH
Q 008094 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE-----------VDVSNW---SPFAPNGFKEILTGATVVFFAYVGFDAV 278 (578)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~G~e~~ 278 (578)
..++|.++..+..+..+|++.++.+++.|... .+.+|+ .+|.|+|+.+++.++...+|+|.|.|.+
T Consensus 143 L~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElv 222 (462)
T COG1113 143 LISVKVFGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELV 222 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999998888876531 122232 2578999999999999999999999999
Q ss_pred hhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCC-CChHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q 008094 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (578)
Q Consensus 279 ~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (578)
...++|+|||+|.+|||+-.-...+.++|+...+.+....|+++.++ ++|+.+.++..|.+....++++.++.+.++++
T Consensus 223 GitA~Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~ 302 (462)
T COG1113 223 GITAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSAL 302 (462)
T ss_pred HHHHHhhcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcc
Confidence 99999999999999999999999999999999999999999998764 56999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc------CHHHHHHHHHHHHHHHHHHHHH
Q 008094 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSA 431 (578)
Q Consensus 358 ~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~------~~~~l~~~~~~~~l~~y~~~~~ 431 (578)
|+.+++++|++|++|+||..||.|+|+| |+++|++|++++.+...+...+. .++.+.+..+.+.+..|.+..+
T Consensus 303 NSglystsRmL~~la~~g~APk~~~kls-k~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~ 381 (462)
T COG1113 303 NSGLYSTSRMLYSLAKQGDAPKAFAKLS-KRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILL 381 (462)
T ss_pred cccccccchHHHHHhhcCcccHhHhhcc-ccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 88999999988887755443331 2467888888888999999999
Q ss_pred HHhhheecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCcc
Q 008094 432 CVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFS 511 (578)
Q Consensus 432 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (578)
|.+++|+++++..+ +.+||
T Consensus 382 s~l~~rk~~~~~~~-------------------------------------------------------------~~~fk 400 (462)
T COG1113 382 SQLKLRKAKPAEGK-------------------------------------------------------------KLKFK 400 (462)
T ss_pred HHHHHHhcchhccc-------------------------------------------------------------Ccccc
Confidence 99999985554422 45699
Q ss_pred ccccchHHHHHHHHHHHHhhcC----CH-HHHHHHHHHHHHHHHHHhhhcccc
Q 008094 512 CPGVPLLPAVSIFFNLFLFAQL----HY-EAWWRFVILSFISIGLYAFYGQYH 559 (578)
Q Consensus 512 ~p~~p~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~g~~~y~~~~~~~ 559 (578)
+|++|+...+.++..++.+..+ +. .......+|.++-.+.|+..++|+
T Consensus 401 m~~~p~~~~l~l~fl~~vlv~m~~~~~t~~~~~~~~~~~~~l~i~~~~~~~~~ 453 (462)
T COG1113 401 MPLYPFTNYLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVKRKKK 453 (462)
T ss_pred cccccHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999988877766654432 22 234444455444444454444333
No 20
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=1.3e-50 Score=434.42 Aligned_cols=374 Identities=26% Similarity=0.376 Sum_probs=305.0
Q ss_pred CCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-H-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhh
Q 008094 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-G-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYA 130 (578)
Q Consensus 53 ~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~-~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~ 130 (578)
+++++||+++.+++++++++.++|+|+|..++..++.+|+ + .+++|++++++.++.+++++|+++++|+ +||.|+|+
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~-sGG~y~~~ 114 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPK-SGGEYNYI 114 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCchhhhH
Confidence 5577999999999999999999999999999999988887 4 5689999999999999999999999999 99999999
Q ss_pred HHHhchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHH
Q 008094 131 YTAFNELTAFLVFAQLMLD-YHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (578)
Q Consensus 131 ~~~~g~~~g~~~g~~~~l~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (578)
++.+||..||+++|..++. +....+..+..++.|+... ..|. ...+.| ...+++.+++++.+
T Consensus 115 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~--~~~~--~~~~~~-------------~~~~i~~~~i~~~~ 177 (501)
T TIGR00911 115 LEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTP--VFPD--CEVPEW-------------AIRLVAVLCVLLLT 177 (501)
T ss_pred HhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCC--CCCchH-------------HHHHHHHHHHHHHH
Confidence 9999999999999987763 3445556666666665331 1121 111222 22357777888999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC---CC--C-CCC--CCChHHHHHHHHHHHhhccchHHHhhh
Q 008094 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVS---NW--S-PFA--PNGFKEILTGATVVFFAYVGFDAVANS 281 (578)
Q Consensus 210 ~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~--~-~~~--~~g~~~~~~~~~~~~~~~~G~e~~~~~ 281 (578)
.+|++|+|..++++.+.+.++++.++++++.++...... +. + .+. +++..++..++..++|+|.|+|.++++
T Consensus 178 ~ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~ 257 (501)
T TIGR00911 178 LVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFV 257 (501)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 999999999999999999999988887777665432111 11 1 111 134567888999999999999999999
Q ss_pred hhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHH-HHcChhHHHHHHHHHHHHHHHHHHHHH
Q 008094 282 AEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAF-ASRGLKYVSVLISFGAVAGLTTTLLVG 360 (578)
Q Consensus 282 ~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (578)
+||+|||+|++|||++.+..+++++|++..++.....|.+++..+++....+ +...+ ....++.+...++.+++.++.
T Consensus 258 a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~i~~~~~is~~~~~~~~ 336 (501)
T TIGR00911 258 TEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLG-VMSWAMPALVGLSCFGSVNGS 336 (501)
T ss_pred HHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888888776544333333 33323 455667777888999999999
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhhheecC
Q 008094 361 LYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKD 440 (578)
Q Consensus 361 ~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~ 440 (578)
+.+.||++++|||||.+|++|+|+|||+++|++|+++..+++.+.....+...+.++.+....+.|.+..++.+++|+|+
T Consensus 337 ~~~~sR~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~ 416 (501)
T TIGR00911 337 LFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKR 416 (501)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccC
Confidence 99999999999999999999999999999999999998888776666667777778888888899999999999999988
Q ss_pred CCCCC
Q 008094 441 RTSRN 445 (578)
Q Consensus 441 ~~~~~ 445 (578)
|+.+|
T Consensus 417 p~~~r 421 (501)
T TIGR00911 417 PEMNR 421 (501)
T ss_pred CCCCC
Confidence 77633
No 21
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=3.7e-50 Score=427.61 Aligned_cols=421 Identities=23% Similarity=0.352 Sum_probs=347.7
Q ss_pred cccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhc
Q 008094 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (578)
Q Consensus 57 l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g 135 (578)
.+|+++.+++.+++++.++|+|+|..++...+.+||. .+++|++++++.++.+++|+|+++++|+++||.|+|+++.+|
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G 84 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFG 84 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcc
Confidence 4788999999999999999999999999988888884 789999999999999999999999999857999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhh
Q 008094 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (578)
Q Consensus 136 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 215 (578)
|..||.+||.+|+++.......+....+++..++.. ++.+ .+....+.+.+++++...+|++|
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~---~~~~--------------~~~~~~~~~~~~~~~~~~ln~~G 147 (473)
T TIGR00905 85 PYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPL---FGSG--------------NPVPSILGASVLLWVFTFLVLRG 147 (473)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcCC--------------CcHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999998887777777777777665431 1111 01122356677777889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC-CC----C---CCChHHHHHHHHHHHhhccchHHHhhhhhhhcC
Q 008094 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS-PF----A---PNGFKEILTGATVVFFAYVGFDAVANSAEESKK 287 (578)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~----~---~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 287 (578)
+|..+|+|.+.+.+++++++++++.+....+.+++. ++ . ++++.++..++...+|+|.|+|.+++++||+||
T Consensus 148 i~~~~~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~ 227 (473)
T TIGR00905 148 VRQAAFINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN 227 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 999999999999999988888777665433322221 11 1 124557788889999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCCh-HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 288 PQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAP-LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQS 365 (578)
Q Consensus 288 P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 365 (578)
+||+|||++.+..+++++|++...+.....|.+++. .++| ..++.+...+++...++.+..+++.+++.++.+.+.|
T Consensus 228 -~r~iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~s 306 (473)
T TIGR00905 228 -KSDVGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAA 306 (473)
T ss_pred -cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888764 4667 6777778878888888899999999999999999999
Q ss_pred HHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhh-----cCHHHHHHHHHHHHHHHHHHHHHHHhhheecC
Q 008094 366 RLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL-----FNVRVLSHILSVGTLTGYSVVSACVIALRWKD 440 (578)
Q Consensus 366 R~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~-----~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~ 440 (578)
|++|+|||||.+|++|+|+|| +++|++|++++.+++.++.+. .+++.+.++.+++.++.|.+.+++.+++|+|+
T Consensus 307 R~~~amardg~lP~~~~~v~~-~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~ 385 (473)
T TIGR00905 307 EVPFSAAKDGLFPKIFGRVNK-NGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVG 385 (473)
T ss_pred HHHHHHHhCCChhHHHHhhCc-cCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999995 599999999998887654432 24678888899999999999999999988765
Q ss_pred CCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchHHH
Q 008094 441 RTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPA 520 (578)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~ 520 (578)
+.+ + .+.|..|++++
T Consensus 386 ~~~---------------------------------------------------------------~--~~~~~~~~~~~ 400 (473)
T TIGR00905 386 TYP---------------------------------------------------------------K--IKNRKALIVGV 400 (473)
T ss_pred Ccc---------------------------------------------------------------c--cccchHHHHHH
Confidence 211 0 12234468888
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhcccccC
Q 008094 521 VSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHAD 561 (578)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 561 (578)
++.+.+.++....++.+.....+++++|+.+|+++.+++++
T Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 441 (473)
T TIGR00905 401 IACVYSIWLLYAAGLKYLLLGFILYAPGIIFYGRARKERGK 441 (473)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88888888877777777778888889999999976666543
No 22
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=2.3e-50 Score=430.93 Aligned_cols=421 Identities=19% Similarity=0.289 Sum_probs=336.0
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhch
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~ 136 (578)
||+++.+|+.++++|.++|+|+|..++..++.+|| +.+++|++++++.++.+++++||++++|+.+||.|.|+++.+||
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP 80 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence 58899999999999999999999999999999999 57999999999999999999999999996255677899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhh
Q 008094 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (578)
Q Consensus 137 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 216 (578)
..||.+||.+|++|+...+......+.++..+. + +.+.+ ....+++++.+++|++|+
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~----------------~~~~~~~~~~~~in~~gv 137 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYWT---D----KVNPA----------------VWIAIFYVFIVIINLFGV 137 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---C----CCCHH----------------HHHHHHHHHHHHHHHhcc
Confidence 999999999999999998888888887776431 1 11111 133445667789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccc--c--------cCCC---CCCCCC----ChHHHHHHHHHHHhhccchHHHh
Q 008094 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEV--D--------VSNW---SPFAPN----GFKEILTGATVVFFAYVGFDAVA 279 (578)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~--------~~~~---~~~~~~----g~~~~~~~~~~~~~~~~G~e~~~ 279 (578)
|..+++|.+.+.++++.++.+++.++... + ..++ +.+.|. ++.++..++...+|+|.|+|.++
T Consensus 138 ~~~~~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~ 217 (478)
T TIGR00913 138 KGYGEAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVA 217 (478)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHH
Confidence 99999999999888877766655443211 0 0111 112222 25678889999999999999999
Q ss_pred hhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccc--c-C-------CCChHHHHHHHcChhHHHHHHHHHH
Q 008094 280 NSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKF--L-D-------EDAPLSDAFASRGLKYVSVLISFGA 349 (578)
Q Consensus 280 ~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~--~-~-------~~~p~~~~~~~~~~~~~~~~~~~~~ 349 (578)
+++||+|||+||+|||++.+..++.++|++..++.....|.++ + + .++|+....+..+.++...++.+..
T Consensus 218 ~~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~ 297 (478)
T TIGR00913 218 LTAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVI 297 (478)
T ss_pred HHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHH
Confidence 9999999999999999999999999999999888888887653 2 1 1268877778888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc------CHHHHHHHHHHHHH
Q 008094 350 VAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTL 423 (578)
Q Consensus 350 ~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~------~~~~l~~~~~~~~l 423 (578)
+++.+++.++.+++.||++|+|||||.+|++|+|+| |+++|++|++++.+++.+..+.. .++.+.++.+...+
T Consensus 298 ~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~ 376 (478)
T TIGR00913 298 LISVLSAANSSLYASSRTLYALAHQGLAPKIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGF 376 (478)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhCCcccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 78999999999988865443332 24667888888999
Q ss_pred HHHHHHHHHHhhheecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccC
Q 008094 424 TGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHG 503 (578)
Q Consensus 424 ~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (578)
+.|++.+++.+++|++++++.++.
T Consensus 377 i~y~~~~~~~i~~r~~~~~~~~~~-------------------------------------------------------- 400 (478)
T TIGR00913 377 FTWMCICLSHIRFRKAMKAQGRSL-------------------------------------------------------- 400 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCc--------------------------------------------------------
Confidence 999999999999987754432221
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHhhcC----------CHHHHHHHHHHHHHHHHHHhhhccccc
Q 008094 504 YSDPPGFSCPGVPLLPAVSIFFNLFLFAQL----------HYEAWWRFVILSFISIGLYAFYGQYHA 560 (578)
Q Consensus 504 ~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~y~~~~~~~~ 560 (578)
.+++||.|..|+.+.++++.++++.... +..+.........+.+++|.+|+.+++
T Consensus 401 --~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (478)
T TIGR00913 401 --DELPYKSQTGPYGSYYALFFNILILIAQGYVAFAPVKFSAKSFFEAYLSLPIFIALYIGHKVYKR 465 (478)
T ss_pred --ccCCccCCCcchHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2567999999999998888877764421 333444555555666667776665544
No 23
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=2.8e-50 Score=424.62 Aligned_cols=408 Identities=21% Similarity=0.281 Sum_probs=335.9
Q ss_pred HHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHHHHHHHHH
Q 008094 69 IGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLML 148 (578)
Q Consensus 69 ~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~~g~~~~l 148 (578)
+++|.+||+|+|..++..++.+||..+++|++++++.++.+++++||++++|+ +||.|.|++|.+||..||.+||.+|+
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~-~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPD-TGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred eeecchhHhHHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 008094 149 DYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTV 228 (578)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~ 228 (578)
++....+..+...+.++..+. | +.+ ...++.+++++++.+|++|+|..+++|.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~---~----~~~----------------~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~ 137 (446)
T PRK10197 81 FWVLVIPLEANIAAMILHSWV---P----GIP----------------IWLFSLVITLALTGSNLLSVKNYGEFEFWLAL 137 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---c----cCc----------------HHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Confidence 999888877766665554321 1 111 22477888888999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcccc-------cCC----C--CCCCCCChHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCChhHH
Q 008094 229 VKVIIVIVVIFAGAFEVD-------VSN----W--SPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIG 295 (578)
Q Consensus 229 ~~~~~~~~~~i~~~~~~~-------~~~----~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a 295 (578)
+|++.++++++.+..... ..+ + .++.|+++.++..++..++|+|.|+|.+++.+||+||||||+|||
T Consensus 138 ~ki~~li~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPra 217 (446)
T PRK10197 138 CKVIAILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRA 217 (446)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHH
Confidence 999888777665543110 011 1 134467888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCC--CChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008094 296 ILGSLLICAALYVGVSLVLTGMVPYKFLDE--DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGR 373 (578)
Q Consensus 296 ~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 373 (578)
+..+...+.++|++..+......|+++.+. ..++..+.+..++++...++.+..+++.+++.++.+++.+|++|+|||
T Consensus 218 i~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ar 297 (446)
T PRK10197 218 TNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSR 297 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999988876443 346777788888888888999999999999999999999999999999
Q ss_pred cCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc------CHHHHHHHHHHHHHHHHHHHHHHHhhheecCCCCCCCc
Q 008094 374 DGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDS 447 (578)
Q Consensus 374 d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~ 447 (578)
||.+|++|+|+| |+++|++|++++.+++.+..+.. .++.+.++.+...++.|.+.+++.+++||+.++.+
T Consensus 298 dg~lP~~~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~~~~--- 373 (446)
T PRK10197 298 RGDAPAVMGKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAEG--- 373 (446)
T ss_pred CCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 999999999999 88999999999887765543331 35778888889999999999999999987633211
Q ss_pred cccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchHHHHHHHHHH
Q 008094 448 SRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNL 527 (578)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~ 527 (578)
+++++|.|..|+.+.++++.+.
T Consensus 374 ----------------------------------------------------------~~~~~~~~~~p~~~~~~i~~~~ 395 (446)
T PRK10197 374 ----------------------------------------------------------SEIRLRMWLYPWLTWLVIGFIT 395 (446)
T ss_pred ----------------------------------------------------------CCCCCcCCCcchHHHHHHHHHH
Confidence 1456899999999999988876
Q ss_pred HHhhc--C--CHHHHHHHHHHHHHHHHHHh-hhcccccCC
Q 008094 528 FLFAQ--L--HYEAWWRFVILSFISIGLYA-FYGQYHADP 562 (578)
Q Consensus 528 ~~~~~--~--~~~~~~~~~~~~~~g~~~y~-~~~~~~~~~ 562 (578)
+.+.. . +........+++++++..|+ ..+|.+|++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (446)
T PRK10197 396 FVLVVMLFRPAQQLEVISTGLLAIGIICTVPIMARWKKLV 435 (446)
T ss_pred HHHHHHHHCcchHHHHHHHHHHHHHHHhhhHHHhhhcccc
Confidence 65432 1 23333346677788888888 444444433
No 24
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-51 Score=410.97 Aligned_cols=423 Identities=26% Similarity=0.432 Sum_probs=359.0
Q ss_pred CCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-H-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhh
Q 008094 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-G-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYA 130 (578)
Q Consensus 53 ~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~-~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~ 130 (578)
++.++||+++.++.+.+.++.++|+|+|..+..+...+|+ + ++..|+++++++++.++||+||++.+|+ +||.|.|.
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipk-sGgd~ayi 84 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPK-SGGDYAYI 84 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCcchhhH
Confidence 4556889999999999999999999999999999999998 4 8889999999999999999999999999 99999999
Q ss_pred HHHhchhhHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHH
Q 008094 131 YTAFNELTAFLVFAQLMLDY-HIGAASIARSLASY-VVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALL 208 (578)
Q Consensus 131 ~~~~g~~~g~~~g~~~~l~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (578)
.+++||..||...|..++.. ....+..+..+++| +... +| ....+ .....+++.+++++.
T Consensus 85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~---fp--~c~~p-------------~~~~~lla~~~l~~l 146 (479)
T KOG1287|consen 85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPF---FP--LCDVP-------------RVASKLLAAALLVLL 146 (479)
T ss_pred HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc---CC--CCCCc-------------hHHHHHHHHHHHHHH
Confidence 99999999999999887764 44558889999999 3322 22 11222 224557899999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc---ccCCCCC--C--CCCChHHHHHHHHHHHhhccchHHHhhh
Q 008094 209 TIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV---DVSNWSP--F--APNGFKEILTGATVVFFAYVGFDAVANS 281 (578)
Q Consensus 209 ~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~--~--~~~g~~~~~~~~~~~~~~~~G~e~~~~~ 281 (578)
+++|+..+|...++|.+++..|++.+.++++.|+... +.+|+.. + ...+...+..++....|+|.|||.....
T Consensus 147 t~~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~v 226 (479)
T KOG1287|consen 147 TLINSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYV 226 (479)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccc
Confidence 9999999999999999999999999999999887642 2233221 1 1223446778999999999999999999
Q ss_pred hhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHc-ChhHHHHHHHHHHHHHHHHHHHHH
Q 008094 282 AEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASR-GLKYVSVLISFGAVAGLTTTLLVG 360 (578)
Q Consensus 282 ~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 360 (578)
+||+|||+||+|||+..++.+++++|++++++...+++.|++.+++.++.-+.+. ++.+. +++.+.+.++++++.|+.
T Consensus 227 teEiknP~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ 305 (479)
T KOG1287|consen 227 TEEIKNPRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSV 305 (479)
T ss_pred hHhhcCccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhH
Confidence 9999999999999999999999999999999999999888876555555555554 55555 899999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhhheecC
Q 008094 361 LYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKD 440 (578)
Q Consensus 361 ~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~ 440 (578)
++++||+++++||+|+||+.|++.|+|..+|..++++....+.+..+..+++.+++..++...+.+.+...+++++|+||
T Consensus 306 ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~ 385 (479)
T KOG1287|consen 306 IFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKH 385 (479)
T ss_pred HHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999998888999999999999888888889999999999999999999999999999999
Q ss_pred CCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchHHH
Q 008094 441 RTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPA 520 (578)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~ 520 (578)
|+. +|++|+|. +.|.
T Consensus 386 p~~---------------------------------------------------------------~rPiKvpl--~~p~ 400 (479)
T KOG1287|consen 386 PPL---------------------------------------------------------------PRPIKVPL--FIPI 400 (479)
T ss_pred CCC---------------------------------------------------------------CCCEeeee--ehHH
Confidence 986 55688887 6777
Q ss_pred HHHHHHHHHhhcC---C-HHHHHHHHHHHHHHHHHHhhhccccc
Q 008094 521 VSIFFNLFLFAQL---H-YEAWWRFVILSFISIGLYAFYGQYHA 560 (578)
Q Consensus 521 ~~~~~~~~~~~~~---~-~~~~~~~~~~~~~g~~~y~~~~~~~~ 560 (578)
+.++.|+++.... + +....+..+.++.|+.+|+.+.++++
T Consensus 401 ~~~~~~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i~~~~ 444 (479)
T KOG1287|consen 401 LFLLICIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFIHWKK 444 (479)
T ss_pred HHHHHHHHHhheeeeecCCccchhHHHHHHHhhhhheEEEEecC
Confidence 7777777764421 2 22356777788999999997776655
No 25
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=7.2e-49 Score=410.90 Aligned_cols=398 Identities=20% Similarity=0.265 Sum_probs=318.4
Q ss_pred cChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHH
Q 008094 61 LGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAF 140 (578)
Q Consensus 61 l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~ 140 (578)
+|+++.+++.+|.++|+|+|..++.+.+.+||..+++|++++++.++.+++++|+++++|+ +||.|.|+++.+||..||
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~-aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPH-AGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHhHHHHhCchhHH
Confidence 5789999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHH
Q 008094 141 LVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESS 220 (578)
Q Consensus 141 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 220 (578)
.+||.+++.+....+........++...+ |. ..+ ....+..+++++++.+|++|+|..+
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~-------------~~~~~~~~~~~~~~~ln~~Gv~~~~ 138 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQALF---GW-----SSW-------------QLLLAELLTLALLWLLNLRGASSSA 138 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHc---CC-----CCc-------------hHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999998876665555555555655443 21 011 1124566777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccCC--CCCCCCCChHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCChhHHHHH
Q 008094 221 VLNSCMTVVKVIIVIVVIFAGAFEVDVSN--WSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILG 298 (578)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~ 298 (578)
|+|.+...+.+..++.+...+ ..+..+ +.++.+.++.++..++...+|+|.|+|.+++++||+|||+||+|||++.
T Consensus 139 ~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~ 216 (410)
T PRK11021 139 NLQTVIALLIVALVVAIWWAG--DIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMI 216 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--CCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHH
Confidence 999988765544333322222 112222 2333456788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccc-CCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 008094 299 SLLICAALYVGVSLVLTGMVPYKFL-DEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLL 377 (578)
Q Consensus 299 s~~~~~i~y~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~l 377 (578)
+..++.++|++..+......+.++. .++.|..+++++..++....++.+..+++.+++.++.+.+.+|++++|||||.+
T Consensus 217 ~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~l 296 (410)
T PRK11021 217 GLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRP 296 (410)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 9999999999999887766654433 345677777777656666667777888999999999999999999999999999
Q ss_pred chhhhhhcCCCCcchhHHHHHHHHHHHHHhh-----cCHHHHHHHHHHHHHHHHHHHHHHHhhheecCCCCCCCccccch
Q 008094 378 PSIFAKVHPKRHTPVHSQVWVGIVAGILAGL-----FNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTS 452 (578)
Q Consensus 378 P~~~~~~~~r~~~P~~ail~~~~i~~i~~~~-----~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~ 452 (578)
|++|+|+| |+++|++|++++.+++.+..++ .+++.+.++.+...++.|.+..++.+++++++.
T Consensus 297 P~~~~k~~-~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~~~----------- 364 (410)
T PRK11021 297 PSYLARLS-ARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKGRY----------- 364 (410)
T ss_pred cHHHHhhc-cCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----------
Confidence 99999999 6799999999988776654433 367788888888889999999999988875420
Q ss_pred hhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchHHHHHHHHHHHHhhc
Q 008094 453 AWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQ 532 (578)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~ 532 (578)
|.+|+++++.|++++..
T Consensus 365 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 381 (410)
T PRK11021 365 ---------------------------------------------------------------RPLAVLGCLLCLLLLVM 381 (410)
T ss_pred ---------------------------------------------------------------HHHHHHHHHHHHHHHHH
Confidence 36889999999999888
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhccccc
Q 008094 533 LHYEAWWRFVILSFISIGLYAFYGQYHA 560 (578)
Q Consensus 533 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 560 (578)
.++..+... .+..+++++.+++||+
T Consensus 382 ~~~~~~~~~---~~~~~~~~~~~~~~~~ 406 (410)
T PRK11021 382 LGWKMLYAL---IMLALLWLFLPKRKTH 406 (410)
T ss_pred hhHHHHHHH---HHHHHHHHHHHHhhhh
Confidence 887765443 3345566665665555
No 26
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=8.4e-48 Score=408.96 Aligned_cols=415 Identities=21% Similarity=0.314 Sum_probs=336.5
Q ss_pred cccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCc-cchhhhhHHHhch
Q 008094 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVV-GGAYLYAYTAFNE 136 (578)
Q Consensus 59 r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~a~~~ael~~~~P~~~-GG~y~~~~~~~g~ 136 (578)
|+++.+++++++++.+||+|+|..++...+.+||. .+++|++++++.++.+++++|+++++|+ + ||.|+|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~-~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPE-LDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCChhhhHHhHcCc
Confidence 68999999999999999999999999999889985 8899999999999999999999999998 6 5999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhh
Q 008094 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (578)
Q Consensus 137 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 216 (578)
..||.+||.+|+++.......+.....++..++ |.+..+. +....+.+.++++.+..+|++|+
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~--------------~~~~~~~~~~~~~~~~~ln~~Gv 142 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFF---PIFGGGN--------------NPPSIIGASVLLWCVHFLVLRGV 142 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccccCCC--------------cHHHHHHHHHHHHHHHHHHHhCH
Confidence 999999999999988776666665556655432 3211110 01112355666777889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCC-----CCC-----CCCChHHHHHHHHHHHhhccchHHHhhhhhhhc
Q 008094 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNW-----SPF-----APNGFKEILTGATVVFFAYVGFDAVANSAEESK 286 (578)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~-----~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 286 (578)
|..+++|.+.+.+++++++++++.+....+.+++ .+. .++.+.++..++...+|+|.|+|.+++++||.|
T Consensus 143 ~~~~~i~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k 222 (468)
T TIGR03810 143 EGAAFINTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAE 222 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhcc
Confidence 9999999999999998888877766543222221 111 112244666788899999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCCh-HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 287 KPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAP-LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQ 364 (578)
Q Consensus 287 ~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (578)
| |||+|||+..+...+.++|++..+...+..|.+++. .++| ..+++++..+++...++.+.++++.+++.++.+.+.
T Consensus 223 ~-~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~ 301 (468)
T TIGR03810 223 K-RSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLP 301 (468)
T ss_pred C-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 799999999999999999999999999988877664 3445 677888888888889999999999999999999999
Q ss_pred HHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhh--c---CHHHHHHHHHHHHHHHHHHHHHHHhhheec
Q 008094 365 SRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL--F---NVRVLSHILSVGTLTGYSVVSACVIALRWK 439 (578)
Q Consensus 365 sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~--~---~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~ 439 (578)
+|++|+|||||.+|++|+|+| |+++|++|++++.+++.++... . .++.+.++.+...++.|.+.+++.+++|+|
T Consensus 302 sR~~~a~ardg~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~ 380 (468)
T TIGR03810 302 AEIPLLMAKDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWR 380 (468)
T ss_pred HHHHHHHHhCCCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999 7799999999988887554433 2 357788888889999999999999999876
Q ss_pred CCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchHH
Q 008094 440 DRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLP 519 (578)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~ 519 (578)
+++. + +++.+ ++++
T Consensus 381 ~~~~-~-------------------------------------------------------------~~~~~----~~~~ 394 (468)
T TIGR03810 381 GGQE-R-------------------------------------------------------------GRRKQ----LLIG 394 (468)
T ss_pred cCCc-c-------------------------------------------------------------chhhh----HHHH
Confidence 5311 0 01111 4778
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhcccc
Q 008094 520 AVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYH 559 (578)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 559 (578)
.++.+.+++......++......+..++|+.+|++++++|
T Consensus 395 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 434 (468)
T TIGR03810 395 LVALLYAVWLIYAAGLKYLLLSAILYAPGIYFYARARKEK 434 (468)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888888888888888888999999997544433
No 27
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=2.9e-48 Score=433.83 Aligned_cols=426 Identities=17% Similarity=0.221 Sum_probs=343.4
Q ss_pred CcccccChhHHHHHH-hhhhhhhhHHHHHHHHHhhhCcH-HHHHHHHHHHHHHHHHHHHHHHhhc-CCCCccchhhhhHH
Q 008094 56 GLLRRLGLFELVLIG-VGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASR-FPAVVGGAYLYAYT 132 (578)
Q Consensus 56 ~l~r~l~~~~~~~~~-i~~~ig~g~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~a~~~ael~~~-~P~~~GG~y~~~~~ 132 (578)
+-+|++|+++.+++. +++++|.|+|..++.+.+.+|.+ +++.|+++++++++++++|+|++++ +|+ +||.|+|++|
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~-aGG~Y~yisr 151 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVK-GGGAYYLISR 151 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ccHHHHHHHH
Confidence 446789999998888 99999999999999999999984 8899999999999999999999998 998 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHH
Q 008094 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (578)
Q Consensus 133 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (578)
++||.+|+.+||.+++++.+..+.++.++++|+..++...+. .. .. .......+++.+++++++++|
T Consensus 152 alGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~---~~--~~--------~~~~~~~iia~i~l~ll~~In 218 (953)
T TIGR00930 152 SLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGS---KI--MV--------DPINDIRIYGTVTVVVLLGIS 218 (953)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---cc--cc--------CccccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887642110 00 00 001123467888899999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-----------c----CCCCCCCCCChHHHHHHHHHHHhhccchHH
Q 008094 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-----------V----SNWSPFAPNGFKEILTGATVVFFAYVGFDA 277 (578)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------~----~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~ 277 (578)
++|+|..+|+|.++++++++.++.+++.++.... . .|+.+..+.+..++...+...+++|.|+|+
T Consensus 219 ~~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~a 298 (953)
T TIGR00930 219 FAGMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILA 298 (953)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888877765543110 0 011111123333466677778889999999
Q ss_pred HhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCC-CChH------------------HHH----HH
Q 008094 278 VANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPL------------------SDA----FA 334 (578)
Q Consensus 278 ~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~-~~p~------------------~~~----~~ 334 (578)
.++++||+|||+|++|||++.++.+++++|++..++...+.+.+.... ++.. ... +.
T Consensus 299 gan~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~ 378 (953)
T TIGR00930 299 GANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQ 378 (953)
T ss_pred HHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHH
Confidence 999999999999999999999999999999999988887776543321 1111 001 11
Q ss_pred H-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--hhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCH
Q 008094 335 S-RGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNV 411 (578)
Q Consensus 335 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~ 411 (578)
. ........++.++++++++++.++++++++|++++|||||.+| ++|+|+|+|+++|++|++++++++.++.++.++
T Consensus 379 ~~~~~~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l 458 (953)
T TIGR00930 379 VMSLVSPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAEL 458 (953)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhH
Confidence 1 1112245678889999999999999999999999999999999 899999999999999999999999888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHH
Q 008094 412 RVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIA 491 (578)
Q Consensus 412 ~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (578)
+.+..+.+.+++++|.+.+++.+++|+++++.+||.
T Consensus 459 ~~ia~lis~~fLl~Y~lvnla~~~l~~~~~p~~RP~-------------------------------------------- 494 (953)
T TIGR00930 459 NTIAPIISNFFLASYALINFSCFHASLLRSPGWRPR-------------------------------------------- 494 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCc--------------------------------------------
Confidence 999999999999999999999999987776555543
Q ss_pred HHHHHHHHhccCCCCCCCccccccchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhcccccC
Q 008094 492 VLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHAD 561 (578)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 561 (578)
||. ..|++|+++.+.|++++...+ |...++.+++++++|+++.+++.+
T Consensus 495 ------------------fk~-~~~~~sllG~l~c~~lmf~i~---w~~ali~~~i~~~ly~~~~~~~~~ 542 (953)
T TIGR00930 495 ------------------FKY-YHWWLSLLGASLCCAIMFLIS---WWAALVAMVIALFLYKYVTYKKPD 542 (953)
T ss_pred ------------------ccc-chHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccCCC
Confidence 333 346899999999999887765 566677778888888866655443
No 28
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=5e-47 Score=405.39 Aligned_cols=375 Identities=19% Similarity=0.248 Sum_probs=292.2
Q ss_pred CCCCCCcccccChhHHHHHHhhhh-hhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhh
Q 008094 51 TNDGEGLLRRLGLFELVLIGVGAS-VGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYL 128 (578)
Q Consensus 51 ~~~~~~l~r~l~~~~~~~~~i~~~-ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~ 128 (578)
..+++++||+++.+++++++++.+ ...|++...+.....+|| +.+++|++++++.++.+++++||++++|+ +||.|+
T Consensus 4 ~g~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~-~Gg~y~ 82 (482)
T TIGR00907 4 LGYKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPT-SGGQYF 82 (482)
T ss_pred cCCcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCC-CccHHH
Confidence 457788999999999999999954 237888888888888999 68999999999999999999999999999 999999
Q ss_pred hhHHHhc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHH
Q 008094 129 YAYTAFN----ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPIL 204 (578)
Q Consensus 129 ~~~~~~g----~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (578)
|+++.+| +..||++||.+++++....++.+...++++........ ..+.+. ++.....++..++
T Consensus 83 ~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~--------~~~~~~~~i~~~~ 150 (482)
T TIGR00907 83 WSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTT----PGREYI--------PTRWHIFGIMIGI 150 (482)
T ss_pred HHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCcc--------ccCchhhhhHHHH
Confidence 9999976 57799999999999999988888888888877654211 000011 1111223466777
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccc---------cCCCC----CCCCCChHHHHHHHHHHHhh
Q 008094 205 LALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD---------VSNWS----PFAPNGFKEILTGATVVFFA 271 (578)
Q Consensus 205 ~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~----~~~~~g~~~~~~~~~~~~~~ 271 (578)
+++++.+|++|+|..++++++..+++++.++++.+......+ .+++. ++.+.++ ++..++..+.|+
T Consensus 151 ~~~~~~in~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~fs 229 (482)
T TIGR00907 151 HLIHALINSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGF-AFLLGLLNPAWS 229 (482)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCch-hhhhhhhhhHHH
Confidence 888999999999999999999888887776654443322111 01111 1223444 566777788999
Q ss_pred ccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhcccc-cccc-C--CCChHHHHHHHc-ChhHHHHHHH
Q 008094 272 YVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVP-YKFL-D--EDAPLSDAFASR-GLKYVSVLIS 346 (578)
Q Consensus 272 ~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~-~~~~-~--~~~p~~~~~~~~-~~~~~~~~~~ 346 (578)
|.|+|.+++++||+||||||+|||++.++.+..+++++..+......+ .+++ + .++|+.+.+.+. +.++...++.
T Consensus 230 f~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~ 309 (482)
T TIGR00907 230 MTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLL 309 (482)
T ss_pred hcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHH
Confidence 999999999999999999999999999998877665555544444433 2222 2 225888888775 5556667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--hhhhhhcCCCCcchhHHHHHHHHHHHHHhhc-----CHHHHHHHHH
Q 008094 347 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-----NVRVLSHILS 419 (578)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~-----~~~~l~~~~~ 419 (578)
+..+++.+++.++.+++.||++++|||||.+| ++|+|+|||+++|++|++++.+++.++.+.. .++.+.++.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~ 389 (482)
T TIGR00907 310 CLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCT 389 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 88888899999999999999999999999999 9999999988999999999998877655443 3577888888
Q ss_pred HHHHHHHHHHHHHHhhheec
Q 008094 420 VGTLTGYSVVSACVIALRWK 439 (578)
Q Consensus 420 ~~~l~~y~~~~~~~~~~r~~ 439 (578)
.+.++.|.++..+.+++|++
T Consensus 390 ~~~~i~y~~~~~~~l~~~~~ 409 (482)
T TIGR00907 390 VALDVSYVIPIICKLAKGRN 409 (482)
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 88899999988877654443
No 29
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=8.1e-49 Score=395.06 Aligned_cols=398 Identities=21% Similarity=0.257 Sum_probs=321.9
Q ss_pred CCCCcCccCCCCCCcccccChhHHHHHHhhhh-hhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 008094 43 TLTAPSVRTNDGEGLLRRLGLFELVLIGVGAS-VGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFP 120 (578)
Q Consensus 43 ~~~~~~~~~~~~~~l~r~l~~~~~~~~~i~~~-ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P 120 (578)
++|+...+.+++||+||++++++.+.++++.+ .-.|+-......+..+|| +..|+|++++.+.++.+++++|+++++|
T Consensus 32 ~d~~~L~~lgYkqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~P 111 (550)
T KOG1289|consen 32 SDEELLAELGYKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMP 111 (550)
T ss_pred CCHHHHHHcCCchhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCC
Confidence 33444456679999999999999988888754 224444444555566776 7999999999999999999999999999
Q ss_pred CCccchhhhhHHH----hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchh
Q 008094 121 AVVGGAYLYAYTA----FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLS 196 (578)
Q Consensus 121 ~~~GG~y~~~~~~----~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (578)
+ +||.|.|+... +||..+|++||...+++..+.++...+.++.+.....+. .+.+..+.+ .
T Consensus 112 t-sGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~------np~y~~~~~--------~ 176 (550)
T KOG1289|consen 112 T-SGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLT------NPNYEPTNY--------H 176 (550)
T ss_pred C-CCcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhc------CCCCcccce--------E
Confidence 9 99999999986 778899999999999999999999999999999887653 122322222 2
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc--------------cccCCCCCCCCCChHHHH
Q 008094 197 INILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE--------------VDVSNWSPFAPNGFKEIL 262 (578)
Q Consensus 197 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------------~~~~~~~~~~~~g~~~~~ 262 (578)
...+..++..+..++|+...|...+++.+...+.++.+++.+|.-... .+..|..++.+.|+ .+.
T Consensus 177 ~~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~-afi 255 (550)
T KOG1289|consen 177 QFGVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGW-AFI 255 (550)
T ss_pred eehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchH-HHH
Confidence 336888999999999999999999999999999988887777654332 12223334545677 788
Q ss_pred HHHHHHHhhccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhcccccc---ccCC--CChHHHHHHHcC
Q 008094 263 TGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYK---FLDE--DAPLSDAFASRG 337 (578)
Q Consensus 263 ~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~---~~~~--~~p~~~~~~~~~ 337 (578)
.++....|++.|+|+++|++||+|||+|+.|||++.++.+..++-.+..+.+..++++| .+++ .+|+.+.+.+..
T Consensus 256 l~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~l 335 (550)
T KOG1289|consen 256 LGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQAL 335 (550)
T ss_pred HhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhc
Confidence 88999999999999999999999999999999999999999999999999999999854 2232 479999999886
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--hhhhhhcCCCCcchhHHHHHHHHHHHHHhhc-----C
Q 008094 338 LKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-----N 410 (578)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~-----~ 410 (578)
++.....+....+++.+....+++.++||+.|+.||||.|| ++++|+||++++|.+|+++..+++.++.++. .
T Consensus 336 g~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~A 415 (550)
T KOG1289|consen 336 GKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATA 415 (550)
T ss_pred CCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 66666777778888888899999999999999999999999 9999999999999999999999988776653 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhheecCCCCCCCccccchhhhh
Q 008094 411 VRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQ 456 (578)
Q Consensus 411 ~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 456 (578)
++++.++..++..++|.++.++.+.++|++-++.|.+.++.+++..
T Consensus 416 f~Alfs~a~i~l~~Ay~iP~~~rlf~~r~~f~~gp~~lGk~s~p~~ 461 (550)
T KOG1289|consen 416 FNALFSAAAIALFIAYAIPIFCRLFFGRDDFRPGPFNLGKFSKPIG 461 (550)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhheeecccccCCCCccccccccchH
Confidence 4667777777778899999998887777644444444444444433
No 30
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=2.3e-46 Score=398.73 Aligned_cols=380 Identities=22% Similarity=0.271 Sum_probs=290.0
Q ss_pred CCCCCCcccccChhHHHHHHhhhh-hhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhh
Q 008094 51 TNDGEGLLRRLGLFELVLIGVGAS-VGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLY 129 (578)
Q Consensus 51 ~~~~~~l~r~l~~~~~~~~~i~~~-ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~ 129 (578)
.+++|||||+++.++.++++++.+ ++.|++..++..+..+||..+++|+++++..++.+++++||++++|+ +||.|+|
T Consensus 5 ~g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~-aGG~Y~~ 83 (475)
T TIGR03428 5 FGYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPI-SGAIYQW 83 (475)
T ss_pred cCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCHHHH
Confidence 457889999999999999999975 89999999999999999999999999999999999999999999999 9999999
Q ss_pred hHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHH
Q 008094 130 AYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (578)
Q Consensus 130 ~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (578)
+++.+||..||++||.+++++....+........++..+.......+.+ +++.. ........+++.+++++.+
T Consensus 84 ~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~ 156 (475)
T TIGR03428 84 SRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGED-PTLTS------PSGAANAVLLGSVLLVLTT 156 (475)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccC-ccccC------CCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999998777666666555544332111100000 01100 0001123456777788899
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCC---C----CCCCCCChHHHHHHHHHHHhhccchHHHhhhh
Q 008094 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSN---W----SPFAPNGFKEILTGATVVFFAYVGFDAVANSA 282 (578)
Q Consensus 210 ~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~----~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~ 282 (578)
.+|++|+|..++++++..+++++.++++++....+.+.+. + .+..+.....+..+....+|+|.|+|.+++++
T Consensus 157 ~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a 236 (475)
T TIGR03428 157 VINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELS 236 (475)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHH
Confidence 9999999999999999999988777666655443322110 1 11112223456778888999999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhcccccc--ccCCCChHHHHHHHc-ChhHHHHHHHHHHHHHHHHHHHH
Q 008094 283 EESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYK--FLDEDAPLSDAFASR-GLKYVSVLISFGAVAGLTTTLLV 359 (578)
Q Consensus 283 ~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 359 (578)
||+|||+||+|||++.++.++.++|.+..+......++. ....+++..+++.+. +.++.. .+....+++.+++.++
T Consensus 237 eE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~-~~~~~~~i~~~~~~~~ 315 (475)
T TIGR03428 237 EETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWGT-VLLVDVAIAILVCTLA 315 (475)
T ss_pred HHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhHH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999888887777776655532 111122233344443 444443 3445557788899999
Q ss_pred HHHHHHHHHHHHhhcCCCc--hhhhhhcCCCCcchhHHHHHHHHHHHHHhhc-----CHHHHHHHHHHHHHHHHHHHHHH
Q 008094 360 GLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-----NVRVLSHILSVGTLTGYSVVSAC 432 (578)
Q Consensus 360 ~~~~~sR~l~~~a~d~~lP--~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~-----~~~~l~~~~~~~~l~~y~~~~~~ 432 (578)
.+.+.||++|++||||.+| ++|+|+|||+++|++|+++..+++.++.++. .++.+.++.+++..++|.++.++
T Consensus 316 ~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~ 395 (475)
T TIGR03428 316 IQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVP 395 (475)
T ss_pred HHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 4899999999999999999998877665542 24567777777888899998888
Q ss_pred Hhhheec
Q 008094 433 VIALRWK 439 (578)
Q Consensus 433 ~~~~r~~ 439 (578)
.+..|+|
T Consensus 396 ~l~~~~~ 402 (475)
T TIGR03428 396 LLLRRLR 402 (475)
T ss_pred HHHHHHh
Confidence 7776654
No 31
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=8.5e-43 Score=371.49 Aligned_cols=426 Identities=21% Similarity=0.290 Sum_probs=297.4
Q ss_pred cccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCccchhhhhHHHhchh
Q 008094 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAAS-VLNALCYAELASRFPAVVGGAYLYAYTAFNEL 137 (578)
Q Consensus 59 r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~-~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~ 137 (578)
||++.+++..+.+..+++ +...+ .....|+..++.|++++++. ++.+++++||++++|+ +||.|.|+++.+||.
T Consensus 1 ~~~~~~~l~~~~~~~v~~--~~~~~--~~a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~GG~y~~~~~a~G~~ 75 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVS--LRGLP--AEAEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPE-KGGVFRWVGEAFGAR 75 (474)
T ss_pred CcccHHHHHHHHHHHHHH--hhcch--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCceeeHhhhcChh
Confidence 469999999888887754 22223 23457888999999999875 6899999999999999 999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhH
Q 008094 138 TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVG 217 (578)
Q Consensus 138 ~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 217 (578)
+||..||.+|+++....+......+..+..+..... ..... .........+.++++++.+.+|++|+|
T Consensus 76 ~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~~~~~l~~~~~~~~in~~gv~ 143 (474)
T TIGR03813 76 WGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEAT-VDESL-----------AGNKLYVLVSVLFVYWLATFIALRGVA 143 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cCccc-----------ccccHHHHHHHHHHHHHHHHHHhcChH
Confidence 999999999999877655443333333222211000 00000 011112223555666778889999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhhhhcc---cccC----CCCCCCCC--ChHHHHHHHHHHHhhccchHHHhhhhhhhcC
Q 008094 218 ESSVLNSCMTVV-KVIIVIVVIFAGAFE---VDVS----NWSPFAPN--GFKEILTGATVVFFAYVGFDAVANSAEESKK 287 (578)
Q Consensus 218 ~~~~~~~~~~~~-~~~~~~~~~i~~~~~---~~~~----~~~~~~~~--g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 287 (578)
..++++++...+ ++++++++++.+... .+.. +++++.|+ ++..+..+ ...+|+|.|+|.++.++||+||
T Consensus 144 ~~~~i~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~kn 222 (474)
T TIGR03813 144 AFTKVAKWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDN 222 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccC
Confidence 999999886544 344444444433321 0110 12222232 23333322 2457899999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCh----HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 288 PQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAP----LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYV 363 (578)
Q Consensus 288 P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (578)
|+||+|||++.+..++.++|++..++...+.|+++...+++ +.+.....+.++...++.+..+++.+++.++.+.+
T Consensus 223 P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~ 302 (474)
T TIGR03813 223 PDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAG 302 (474)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887654333 33445555667777777778888899999999999
Q ss_pred HHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc----C----HHHHHHHHHHHHHHHHHHHHHHHhh
Q 008094 364 QSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF----N----VRVLSHILSVGTLTGYSVVSACVIA 435 (578)
Q Consensus 364 ~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~----~----~~~l~~~~~~~~l~~y~~~~~~~~~ 435 (578)
.+|+++++||||.+|++|+|+| |+++|++|++++.+++.++..+. + ++.+.++.+...++.|++.+++.++
T Consensus 303 ~sR~~~a~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~ 381 (474)
T TIGR03813 303 PSSGMLAVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIY 381 (474)
T ss_pred HHHHHHHHhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 88999999999988755433221 2 3567777788888999999999999
Q ss_pred heecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccc--------hhHHH-HHHHHHHHHHHHHHHHhccC
Q 008094 436 LRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRIN--------ASYIL-LIVAVVIAVLASAMLCLRHG 503 (578)
Q Consensus 436 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~ 503 (578)
+|+|+++.+||++-+.+++...++..+.+..+.+.......++ .++.. +..+.++...+.|+++.||+
T Consensus 382 lr~~~~~~~rpf~~p~g~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ny~~~~~~~~~~~~~~~~~~~~~~~ 458 (474)
T TIGR03813 382 LRYSQPDRPRPYRIPGGLAGMWFIGGLGFVGSALAFVLSFIPPSQIGTGSPTRYVGLLIGLAALFVTAPFLIYARRK 458 (474)
T ss_pred HHhcCCCCCCCeEecCCccchhHHHHHHHHHHHHHHheeEeCCcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9988888888876665555444444444444444433332222 12333 33444444555555554444
No 32
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-42 Score=368.62 Aligned_cols=378 Identities=37% Similarity=0.564 Sum_probs=322.4
Q ss_pred CCCCcccccChhH-HHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhH
Q 008094 53 DGEGLLRRLGLFE-LVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAY 131 (578)
Q Consensus 53 ~~~~l~r~l~~~~-~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~ 131 (578)
++++++|+++.++ +..+.++.++|.|++..++.....+ +...++|++++++..+.+++++|+++.+|+ +||.|.|++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~-~GG~y~~~~ 83 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPS-AGGAYAYAK 83 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCeeeehh
Confidence 4566789999999 8899999999999999999887766 655555999999988889999999999999 999999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHH
Q 008094 132 TAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIV 211 (578)
Q Consensus 132 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (578)
+.+||..|+.++|.+++++....++.+.....++..+++..+.+ ..+ .....+++.+++++...+
T Consensus 84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------------~~~~~~~~~~~~~~~~~l 148 (466)
T COG0531 84 RALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLL--SIG-------------PLLIILIALALIALLTLL 148 (466)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh--cCC-------------chHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999777765421000 000 023446888999999999
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCC-----CCChHHHHHHHHHHHhhccchHHHhhhhhhhc
Q 008094 212 LCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFA-----PNGFKEILTGATVVFFAYVGFDAVANSAEESK 286 (578)
Q Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 286 (578)
|++|+|..++++.+.+.+++++++++.+.+....+..+.+.+. ......+..++...+|+|.|+|.+++++||+|
T Consensus 149 n~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k 228 (466)
T COG0531 149 NLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVK 228 (466)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhc
Confidence 9999999999999999999999999988877765544322211 12344678888999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCC---ChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 287 KPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDED---APLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYV 363 (578)
Q Consensus 287 ~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (578)
||+|++|||++.+.+.+.++|++.........|.+++... .|..+......+.+...++.+..+.+.+++.++...+
T Consensus 229 np~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~ 308 (466)
T COG0531 229 NPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILA 308 (466)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988644433 6888888888878888999999999999999999999
Q ss_pred HHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc-----CHHHHHHHHHHHHHHHHHHHHHHHhhhee
Q 008094 364 QSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-----NVRVLSHILSVGTLTGYSVVSACVIALRW 438 (578)
Q Consensus 364 ~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~-----~~~~l~~~~~~~~l~~y~~~~~~~~~~r~ 438 (578)
.+|.+++|||||.+|++|+|+|+|+++|++++++..+++.++.... .++.+.++.+...++.|.+...+.+.+|+
T Consensus 309 ~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~ 388 (466)
T COG0531 309 VSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRR 388 (466)
T ss_pred HHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999987333332 35789999999999999999999999998
Q ss_pred cCCCCCCCc
Q 008094 439 KDRTSRNDS 447 (578)
Q Consensus 439 ~~~~~~~~~ 447 (578)
|+++.+|+.
T Consensus 389 ~~~~~~~~~ 397 (466)
T COG0531 389 KKPDLKRPF 397 (466)
T ss_pred cCCCCCCcc
Confidence 876654443
No 33
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=1.3e-41 Score=362.74 Aligned_cols=395 Identities=18% Similarity=0.209 Sum_probs=284.8
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHH-HHHHHHHHHHHhhcCC-CCccchhhhhHHHhc
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAA-SVLNALCYAELASRFP-AVVGGAYLYAYTAFN 135 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~-~~~~a~~~ael~~~~P-~~~GG~y~~~~~~~g 135 (578)
+||++.++++++.++.+. ++...+. ....|...+..+++++++ .++.+++++||++++| + +||.|.|+++++|
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~~--~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~-~GG~y~wv~~a~G 77 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYPT--FATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWE-EGGIFAWVSNTLG 77 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC-CCCeeeehhhccC
Confidence 577999999999988874 3444442 446788777778888887 6889999999999997 7 8999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhh
Q 008094 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (578)
Q Consensus 136 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 215 (578)
|.+||.++|.+|+.+....+.........+..... .|.+. .+ .....+..++++++++++|++|
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~-~~~~~--~~-------------~~~~~i~~l~i~~~~t~~n~~G 141 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK-FPALN--ED-------------PIIKFIAALIIFWALAFSQFGG 141 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cchhc--cC-------------cHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998776554443333333222221 11110 01 1122345566777888999999
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHhhhhcc--cc-c----CCCCCCCCCC-hHHHHHHHHHHHhhccchHHHhhhhhhhc
Q 008094 216 VGESSVLNSCMTVVKVII-VIVVIFAGAFE--VD-V----SNWSPFAPNG-FKEILTGATVVFFAYVGFDAVANSAEESK 286 (578)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~--~~-~----~~~~~~~~~g-~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 286 (578)
.|..++++++..+..++. .+++++.+... .+ . .+.+++.|+. ..+....+...+|+|.|+|.+++++||+|
T Consensus 142 ~k~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~k 221 (507)
T TIGR00910 142 TKRTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELE 221 (507)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHcc
Confidence 999999998876544333 33333222211 11 1 1112233321 11333444556899999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHH----HHHcC--hhHHHHHHHHHHHHHHHHHHHHH
Q 008094 287 KPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDA----FASRG--LKYVSVLISFGAVAGLTTTLLVG 360 (578)
Q Consensus 287 ~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 360 (578)
||+||+|||++.+.+++.++|.+..+.+....|+++.+.+++..+. ....+ .++...++.+..+++.+++.+++
T Consensus 222 nP~r~~PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~ 301 (507)
T TIGR00910 222 NPGRDYPLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASW 301 (507)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888888888876644433333 33332 25566677888888999999999
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc---------CHHHHHHHHHHHHHHHHHHHHH
Q 008094 361 LYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF---------NVRVLSHILSVGTLTGYSVVSA 431 (578)
Q Consensus 361 ~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~---------~~~~l~~~~~~~~l~~y~~~~~ 431 (578)
+++.||+++++||||.+|++|+|+| |+++|++|++++.+++.++.++. .+..+.++.+...++.|++..+
T Consensus 302 i~~~sR~l~~~ardg~lP~~~~k~n-k~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~ 380 (507)
T TIGR00910 302 IVGPSRGMFAAAQKGLLPAAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFI 380 (507)
T ss_pred HHHHHHHHHHhcccCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 88999999999998877644331 1234556677888999999999
Q ss_pred HHhhheecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchh
Q 008094 432 CVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLF 474 (578)
Q Consensus 432 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (578)
+.+++|+|+++..||++-+.+++...++..+.+..+.+...+.
T Consensus 381 a~i~lr~k~p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v~~ 423 (507)
T TIGR00910 381 GYFVLILKHPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFFIS 423 (507)
T ss_pred HHHHHHHhcCCCCCCeEecCCccchhhHHHHHHHHHHHHHhee
Confidence 9999999999888887766555544455555555555444433
No 34
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=1.6e-42 Score=365.92 Aligned_cols=362 Identities=33% Similarity=0.557 Sum_probs=307.4
Q ss_pred cChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCccchhhhhHHHhchhhH
Q 008094 61 LGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAAS-VLNALCYAELASRFPAVVGGAYLYAYTAFNELTA 139 (578)
Q Consensus 61 l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~-~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g 139 (578)
+++++..+++++.++|+|++..+ ....+|+..+++|++++++. ++.+++|+|+++++|+ +||.|.|+++.+||..|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~--~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~-~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP--AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPS-AGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH--HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-STTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-cCeeeehhhhcccccch
Confidence 58899999999999999999887 66668998899999998887 8999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHH
Q 008094 140 FLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGES 219 (578)
Q Consensus 140 ~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 219 (578)
+.++|.++++|....+..+...++++...++ +.+ .+++....++++++++....+|++|.|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------------~~~~~~~~~i~~~~~~~~~~l~~~g~~~~ 140 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFG--PDL---------------NPSPWPQFLIAIILILLFTLLNLLGIKLS 140 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT--GGG---------------TCSHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhccc--ccc---------------ccccchheeeeecccccceEeeechhhhh
Confidence 9999999999999988888888888765432 100 01122344678889999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhhhcccccCC-------CCCCCCCChHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCC
Q 008094 220 SVLNSCMTVVKV-IIVIVVIFAGAFEVDVSN-------WSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRD 291 (578)
Q Consensus 220 ~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~-------~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ 291 (578)
+|++.+.+.+++ ..++++++.++...+.+. .+++.|+++.+++.++...+|+|.|+|.+++++||.|| ||
T Consensus 141 ~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ 218 (426)
T PF13520_consen 141 GKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KT 218 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HH
T ss_pred hhhhhhhhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hh
Confidence 999999999999 566666666655433221 22445666667888999999999999999999999777 89
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCC----hHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 292 LPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDA----PLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 367 (578)
Q Consensus 292 ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 367 (578)
+|||++.+.+++.++|.+..++.....|+++.+.++ +.....+..++++...++.+..+++.+++.++.+.+.+|+
T Consensus 219 ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~ 298 (426)
T PF13520_consen 219 IPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRL 298 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred heeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhc
Confidence 999999999999999999999999999988765432 4667777778789999999999999999999999999999
Q ss_pred HHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc------CHHHHHHHHHHHHHHHHHHHHHHHhhheecCC
Q 008094 368 YLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSACVIALRWKDR 441 (578)
Q Consensus 368 l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~ 441 (578)
+++|||||.+|++|+|+| |+++|++|+++..+++.++.... +++.+.++.++...+.|.+..++.+++|+|++
T Consensus 299 l~~~a~d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (426)
T PF13520_consen 299 LYAMARDGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRP 377 (426)
T ss_dssp HHHHHHTTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSC
T ss_pred ccccccccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 999999999999999999 99999999999999986654332 45789999999999999999999999999988
Q ss_pred CCCC
Q 008094 442 TSRN 445 (578)
Q Consensus 442 ~~~~ 445 (578)
+.+|
T Consensus 378 ~~~r 381 (426)
T PF13520_consen 378 DLKR 381 (426)
T ss_dssp SSGH
T ss_pred CcCC
Confidence 7644
No 35
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=1.1e-40 Score=356.85 Aligned_cols=434 Identities=16% Similarity=0.196 Sum_probs=291.2
Q ss_pred cccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHH-HHHHHHHHHHHhhcCCCCccchhhhhHHHhc
Q 008094 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAA-SVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (578)
Q Consensus 57 l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~-~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g 135 (578)
+||+++++++..++++.++|.+. .+.....+||..++.+++++++ .++.+++++|+++++|+++||.|+|+++.+|
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~~---~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G 81 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFAN---SPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVG 81 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCCc---hHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcC
Confidence 47889999999999999998652 2334566888777777777766 6889999999999999526999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHh
Q 008094 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVS-ILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (578)
Q Consensus 136 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (578)
|.+||..+|.+|.++....+............ ++... ....|.... .+......+++++.+++++.+|++
T Consensus 82 ~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~~~~~~a~~~~~~~t~vn~~ 152 (496)
T PRK15238 82 PKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKD-----TTQTWHFLG----LNSTQVVGILAVIWMILVTFVASK 152 (496)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc-----hhhhhhhhc----ccchHHHHHHHHHHHHHHHHHHcc
Confidence 99999999998888776554333221111111 11100 000110000 001112224555666688999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh---h-ccc-c---cCCCCCCC---CCCh---HHHHHHHHHHHhhccchHHHhh
Q 008094 215 GVGESSVLNSCMTVVKVIIVIVVIFAG---A-FEV-D---VSNWSPFA---PNGF---KEILTGATVVFFAYVGFDAVAN 280 (578)
Q Consensus 215 g~~~~~~~~~~~~~~~~~~~~~~~i~~---~-~~~-~---~~~~~~~~---~~g~---~~~~~~~~~~~~~~~G~e~~~~ 280 (578)
|+|..++++++.+.+++...+++++.. . ... + ..++.++. ..++ .+++.++..+.|+|.|+|.+++
T Consensus 153 g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~ 232 (496)
T PRK15238 153 GINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGG 232 (496)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999988777654432222111 1 111 1 00111111 1111 2577778889999999999999
Q ss_pred hhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCC-------CChHHHHHHHc-----------------
Q 008094 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-------DAPLSDAFASR----------------- 336 (578)
Q Consensus 281 ~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~-------~~p~~~~~~~~----------------- 336 (578)
++||+|||||++|||++.+..++.++|++..+.+....|+++... +.|.. ..+..
T Consensus 233 ~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~~~~~ 311 (496)
T PRK15238 233 LVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSPAASLT 311 (496)
T ss_pred HHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccchhhhhh
Confidence 999999999999999999999999999999888877777665432 11221 11211
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc--C----
Q 008094 337 GLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF--N---- 410 (578)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~--~---- 410 (578)
.+.+...++.+..+.+.+++.++..++.+|.+++++|||.+||+|+|+| |+++|++|++++.+++.++..+. .
T Consensus 312 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~n-k~g~P~~a~~~~~~i~~l~~~~~~~~~~~~ 390 (496)
T PRK15238 312 LGVWFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLN-KNGMPANAMWLQCIIVSVFILLVSFGGDAA 390 (496)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHhCchhH
Confidence 1234445667788889999999999999999999999999999999999 89999999999988776553332 1
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhhheecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhcc-----chhH-
Q 008094 411 ---VRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRI-----NASY- 481 (578)
Q Consensus 411 ---~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~- 481 (578)
++.+.++.++..++.|++.+++++++|| +++.+||++.++++.....+..+.+....+...+.... +...
T Consensus 391 ~~~f~~l~~l~~~~~li~y~~~~~a~i~~r~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 469 (496)
T PRK15238 391 SAFFNILTLMANVSMTLPYLFLAGAFPFFKK-KKDIDRPFVVFKTKKSTLIATIVVVLVVGFANVFTIIQPVIEGDYQST 469 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCceecCCcceehhHHHHHHHHHHHHHHHheeCCCcCCCHHHH
Confidence 4678999999999999999999999876 56667776655443222233333333333322222221 1222
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCC
Q 008094 482 ILLIVAVVIAVLASAMLCLRHGYS 505 (578)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~ 505 (578)
....++.++...+.+.++++|+++
T Consensus 470 ~~~~~~~~i~~~~~~~~~~~~~~~ 493 (496)
T PRK15238 470 FWMIGGPVFFSILAWIIYQNYEKK 493 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchh
Confidence 234445555555566665555544
No 36
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=1.1e-44 Score=386.81 Aligned_cols=359 Identities=30% Similarity=0.485 Sum_probs=300.8
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHHHHH
Q 008094 66 LVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFA 144 (578)
Q Consensus 66 ~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~~g~ 144 (578)
+.+++++.++|+|.|...+.....+|| +.++++++++++.++.+.+++||++++|+ +||.|.|++|.+||..|+.+||
T Consensus 2 v~~~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~-~Gg~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 2 VFMISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPS-AGGFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred EEEeeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcc-ccchhhhhhhccCCcCCceeeH
Confidence 345788999999999999999999999 78999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC-ccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008094 145 QLMLDYHIGAASIARSLASYVVSILELFPFFKENIP-SWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLN 223 (578)
Q Consensus 145 ~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 223 (578)
.+|+.+....+......+.++..+ +..+ +.+ .|.+.. ++..+++++...+|++|+|..++++
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~------------~~~~i~~~~~~~l~~~gv~~~~~~~ 143 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFW-GYFP----GLPSTWVWGI------------LIAIIFILLITLLNLFGVRVSGKIE 143 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccc-cccc----cccccccccc------------hhhhhhhhhhhhhhhhhhhccchHH
Confidence 999999999888887777666544 1111 222 332110 3577788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh-hc-ccc--cCCC---------CCCCCCC--------hHHHHHHHHHHHhhccchHHHhhhh
Q 008094 224 SCMTVVKVIIVIVVIFAG-AF-EVD--VSNW---------SPFAPNG--------FKEILTGATVVFFAYVGFDAVANSA 282 (578)
Q Consensus 224 ~~~~~~~~~~~~~~~i~~-~~-~~~--~~~~---------~~~~~~g--------~~~~~~~~~~~~~~~~G~e~~~~~~ 282 (578)
.++..++++.++.+++.+ .. ..+ ..+. ++..+++ +.+++.++..++++|.|+|+++..+
T Consensus 144 ~~~~~i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a 223 (478)
T PF00324_consen 144 FILTIIKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILA 223 (478)
T ss_pred HHHHHHhhhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhccccccccccccc
Confidence 999999999888888777 21 111 1111 1122333 7789999999999999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCC------ChHHHHHHHcChhHHHHHHHHHHHHHHHHH
Q 008094 283 EESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDED------APLSDAFASRGLKYVSVLISFGAVAGLTTT 356 (578)
Q Consensus 283 ~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (578)
||+|||||++|||+..++++++++|++..++.....|+++.... +|+.++.+..++++...++.+..+++.+++
T Consensus 224 ~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~ 303 (478)
T PF00324_consen 224 EEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSS 303 (478)
T ss_pred ccCCCchhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhh
Confidence 99999999999999999999999999999999999988865321 488899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcC------HHHHHHHHHHHHHHHHHHHH
Q 008094 357 LLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFN------VRVLSHILSVGTLTGYSVVS 430 (578)
Q Consensus 357 ~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~------~~~l~~~~~~~~l~~y~~~~ 430 (578)
.++.++++||++++|||||.+|+++.++|+|+++|++|++++.+++.+..+..+ ++.+.++.++..++.|.+.+
T Consensus 304 ~~~~~~~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (478)
T PF00324_consen 304 ANASLYAASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILIN 383 (478)
T ss_pred hhhhhcccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhh
Confidence 999999999999999999999966666677999999999999888776654432 34667777888889999999
Q ss_pred HHHhhheecCCC
Q 008094 431 ACVIALRWKDRT 442 (578)
Q Consensus 431 ~~~~~~r~~~~~ 442 (578)
++.+++|++.+.
T Consensus 384 ~s~~~~r~~~~~ 395 (478)
T PF00324_consen 384 ISYIRFRKKFKY 395 (478)
T ss_pred hhhhhhhhhhcc
Confidence 999988877543
No 37
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.97 E-value=2.6e-28 Score=253.33 Aligned_cols=336 Identities=15% Similarity=0.096 Sum_probs=260.9
Q ss_pred HHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHHHHHHHH
Q 008094 68 LIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLM 147 (578)
Q Consensus 68 ~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~~g~~~~ 147 (578)
++.+++++|+|++..|+...+.+++..++..+++++.+...+++++|+++++|+ +||.|.|+++.+||..|++.+|.++
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~-~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG-GASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred EEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 456789999999999998777666667777899999999999999999999998 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 008094 148 LDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMT 227 (578)
Q Consensus 148 l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 227 (578)
+.+.....++....++++..++... ...+.+ ..+..+++.+++..++.+|.|..+|+|.+.+
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~--~~~~~~----------------~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~ 144 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEY--FGFPWS----------------ARAIVLIFTVLFGSFVWLSTSAVDRITRVLI 144 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHh--cCCCcc----------------HHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 9888777788888888887765421 111111 1235666777888999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcccccCCCCCCC--CCChHHHHHHHHHHHhhccchH-HHhhhhhhhcCCCCChhHHHHHHHHHHH
Q 008094 228 VVKVIIVIVVIFAGAFEVDVSNWSPFA--PNGFKEILTGATVVFFAYVGFD-AVANSAEESKKPQRDLPIGILGSLLICA 304 (578)
Q Consensus 228 ~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~G~e-~~~~~~~E~k~P~k~ip~a~~~s~~~~~ 304 (578)
..++..++++++.+..+.+.+++.+.. +.++.++..++...+++| |+| ......+|.||++|++||+++.+..++.
T Consensus 145 ~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~ 223 (381)
T TIGR00837 145 FGKIIAFALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIAL 223 (381)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 999998888888777776666654431 235667777888888888 665 5888899998779999999999999999
Q ss_pred HHHHHHHHHHhccccccccC-------CCChHHHHHHH-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 008094 305 ALYVGVSLVLTGMVPYKFLD-------EDAPLSDAFAS-RGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGL 376 (578)
Q Consensus 305 i~y~~~~~~~~~~~~~~~~~-------~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~ 376 (578)
++|++......+..|.+++. +.++..+.++. .++++...++.++..+++.++.++...+.++.
T Consensus 224 ~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~--------- 294 (381)
T TIGR00837 224 VLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDY--------- 294 (381)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 99999999999999988763 12456667766 46677788889999999999999888777743
Q ss_pred CchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 377 LPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACV 433 (578)
Q Consensus 377 lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ 433 (578)
+++.+++.|++++ |..+.++..+...++..+.....+..+...+....+....+..
T Consensus 295 l~~~~~~~~~~~~-~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~ 350 (381)
T TIGR00837 295 LADLFKFDDSKKG-RFKTGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPA 350 (381)
T ss_pred HHHHhCCCcccCC-CchhhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555444434 6677777777777777666666666666666555444444333
No 38
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3e-27 Score=241.86 Aligned_cols=419 Identities=14% Similarity=0.180 Sum_probs=319.4
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHHHHH
Q 008094 66 LVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFA 144 (578)
Q Consensus 66 ~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~~g~ 144 (578)
+..=.+-.+.|.-.|....++.+.+|. ..++..++++.+.++++.+++.+++.--.++||.|..++|.+||.+|-.+|.
T Consensus 120 VyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLGPEFGgAVGl 199 (1075)
T KOG2082|consen 120 VYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGL 199 (1075)
T ss_pred eeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccCccccceeee
Confidence 333445577888899999999999998 4888888999999999999999999966668999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCc-cccccchhhhHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008094 145 QLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGE-EFLGGTLSINILAPILLALLTIVLCWGVGESSVLN 223 (578)
Q Consensus 145 ~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 223 (578)
++.++..+..+.+..+..+.+.... +|....-- ....+ +..+......+.+.+++++..++...|+|...++.
T Consensus 200 cFYLgtT~AaaMYIlGaVEi~L~Yi--~P~aaIf~----~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk~A 273 (1075)
T KOG2082|consen 200 CFYLGTTVAAAMYILGAVEIFLTYI--FPAAAIFG----AEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNKFA 273 (1075)
T ss_pred hhhhhhHHHHHHHHHhHHHHHHHHH--ccHhhhcC----ccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999888876532 23211000 00000 11122334457788888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcc------------------------------cccCC------------------------
Q 008094 224 SCMTVVKVIIVIVVIFAGAFE------------------------------VDVSN------------------------ 249 (578)
Q Consensus 224 ~~~~~~~~~~~~~~~i~~~~~------------------------------~~~~~------------------------ 249 (578)
.++..+.++.++.+...++-. .+..+
T Consensus 274 ~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~c~~y~~ 353 (1075)
T KOG2082|consen 274 PVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSATCDEYFS 353 (1075)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCcccccccc
Confidence 988888877777665543210 00000
Q ss_pred ---------CCC-------------C------CC---------C---------C-hHHHHHHHHHHHhhccchHHHhhhh
Q 008094 250 ---------WSP-------------F------AP---------N---------G-FKEILTGATVVFFAYVGFDAVANSA 282 (578)
Q Consensus 250 ---------~~~-------------~------~~---------~---------g-~~~~~~~~~~~~~~~~G~e~~~~~~ 282 (578)
+.+ + .+ + + -.+|..-+.+-+.+.+|.-+.++.+
T Consensus 354 ~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGImaGSNrS 433 (1075)
T KOG2082|consen 354 KNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIMAGSNRS 433 (1075)
T ss_pred cccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceeeecCCCC
Confidence 000 0 00 0 0 0123333334556789999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHH-----cChhHHHHHHHHHHHHHHHHHH
Q 008094 283 EESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFAS-----RGLKYVSVLISFGAVAGLTTTL 357 (578)
Q Consensus 283 ~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 357 (578)
++.|||+|++|.+.+.+.+....+|+...+.+..++....+.+. +.+.... ...-+-.+++.++.++|.+++.
T Consensus 434 GDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDK--fG~sv~g~lVva~laWPsPwVi~IGsFlST~GAg 511 (1075)
T KOG2082|consen 434 GDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDK--FGQSVGGNLVVATLAWPSPWVIVIGSFLSTCGAG 511 (1075)
T ss_pred ccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhh--hhhhccCcEEEEEecCCCceeeehhHHHHHhHHH
Confidence 99999999999999999999999999999988888764433221 1111110 0011123567788999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCc--hhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008094 358 LVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIA 435 (578)
Q Consensus 358 ~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~ 435 (578)
+.++.+++|++++.|||+.+| +.|+|.. +++-|.+|++++.+++.+..++.+++.+..+.+++++.+|..++++...
T Consensus 512 LQsLtgAPRLLQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fVNLaCav 590 (1075)
T KOG2082|consen 512 LQSLTGAPRLLQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFVNLACAV 590 (1075)
T ss_pred HhhhcCcHHHHHHHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999 9999988 8899999999999999888889999999999999999999999999998
Q ss_pred heecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccc
Q 008094 436 LRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGV 515 (578)
Q Consensus 436 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 515 (578)
...-+.+.+||+.++++|
T Consensus 591 qtLLrtPnWRPRfkyyHW-------------------------------------------------------------- 608 (1075)
T KOG2082|consen 591 QTLLRTPNWRPRFKYYHW-------------------------------------------------------------- 608 (1075)
T ss_pred HHHhcCCCCCccchhhhh--------------------------------------------------------------
Confidence 888888889988777777
Q ss_pred chHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhcccc
Q 008094 516 PLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYH 559 (578)
Q Consensus 516 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 559 (578)
.++.++...|+++|+..+ |-...+-+++..++|-+-.+|-
T Consensus 609 -~LSflG~sLC~~iMF~~S---WyyAlvAm~~a~~IYKYiEykG 648 (1075)
T KOG2082|consen 609 -SLSFLGASLCLAIMFISS---WYYALVAMLIAGVIYKYIEYKG 648 (1075)
T ss_pred -HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhcc
Confidence 678888888888877766 5566677788888887544443
No 39
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.95 E-value=3.8e-26 Score=232.25 Aligned_cols=381 Identities=18% Similarity=0.224 Sum_probs=293.4
Q ss_pred ccChhHHHHHHhh-hhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchh
Q 008094 60 RLGLFELVLIGVG-ASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNEL 137 (578)
Q Consensus 60 ~l~~~~~~~~~i~-~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~ 137 (578)
+|+.++-++.-.. .+...=+|...|.+.+++|- -.++-++++..+.+++.++.+.++++--.+.||.|+.++|.+||.
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGpE 145 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGPE 145 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCcc
Confidence 7877775444333 34445578889999999998 588888999999999999999999998887999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhH
Q 008094 138 TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVG 217 (578)
Q Consensus 138 ~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 217 (578)
+|--.|..+.++.++.++.+..++.+-+.+.++-- ... ..+.+....+.+...+...+++.+...+++.|..
T Consensus 146 fGGSIGllFf~anV~~~am~isG~vE~il~nfG~~---a~g-----~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsa 217 (945)
T KOG1288|consen 146 FGGSIGLLFFVANVFNCAMNISGFVEPILDNFGKE---AQG-----ASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSA 217 (945)
T ss_pred cCCeeeehhhHHHHhcchhhhhhhhHHHHHhcCcc---ccC-----CcccccCCCCcchhhHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999888877665411 000 0111223345556667788888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccc---------------------CC--CC------------CCCCCChHHHH
Q 008094 218 ESSVLNSCMTVVKVIIVIVVIFAGAFEVDV---------------------SN--WS------------PFAPNGFKEIL 262 (578)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------------~~--~~------------~~~~~g~~~~~ 262 (578)
..+|..++..+...+.+....+-.++.... ++ |+ .....+..+|.
T Consensus 218 lfAkas~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~ 297 (945)
T KOG1288|consen 218 LFAKASNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFA 297 (945)
T ss_pred HHHhhhhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehh
Confidence 999987776655444444433322221110 00 10 11112333555
Q ss_pred HHHHHHHhhccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHHH
Q 008094 263 TGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVS 342 (578)
Q Consensus 263 ~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 342 (578)
..+...+-+..|.-+.++|++|.|+|.|.+||+.+.++....++|+++.+.+....|...+.++-. ++..... ..
T Consensus 298 ~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~---v~~~isl--~p 372 (945)
T KOG1288|consen 298 STFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYD---VMMHISL--HP 372 (945)
T ss_pred hhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchh---heeeccc--cc
Confidence 555666778889999999999999999999999999999999999999999998888876655432 2222221 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--hhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 008094 343 VLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSV 420 (578)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~ 420 (578)
.++.++.+.+.+.+..+.+.++||++.++|||+.+| ..|+|...+.+.|+.|+.+++.++-+..+..+++.+..+.++
T Consensus 373 ~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~ 452 (945)
T KOG1288|consen 373 PFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITM 452 (945)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 345566666777777788999999999999999999 678888889999999999999999988888899999999999
Q ss_pred HHHHHHHHHHHHHhhheecCCCCCCCccccchh
Q 008094 421 GTLTGYSVVSACVIALRWKDRTSRNDSSRLTSA 453 (578)
Q Consensus 421 ~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~ 453 (578)
.++++|..++++.+.++....+..||..++.+|
T Consensus 453 ~FLlty~~vNLacl~LeissAPNFRPtFkyF~w 485 (945)
T KOG1288|consen 453 TFLLTYGAVNLACLLLEISSAPNFRPTFKYFNW 485 (945)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCchhhhhhH
Confidence 999999999999999999988888887666555
No 40
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.92 E-value=1.3e-21 Score=201.44 Aligned_cols=287 Identities=17% Similarity=0.247 Sum_probs=232.1
Q ss_pred cccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhh
Q 008094 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELT 138 (578)
Q Consensus 59 r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~ 138 (578)
++++.+|..++.++.++|+|++..|+...+.+|+.++++++++++.+++.+++++|+++++|+ . +.+.|.++.+||..
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~-~-~~~~~~~~~~Gk~~ 78 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE-K-NFSEILSKYLGKIL 78 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC-C-CHHHHHHHHhhHHH
Confidence 368999999999999999999999999999899989999999999999999999999999998 5 69999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHH
Q 008094 139 AFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGE 218 (578)
Q Consensus 139 g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 218 (578)
|++.+|.+++......+......++++.... .| ++|.| ++...++++....+..|.+.
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~----~tp~~----------------~~~l~~l~~~~~~~~~Gi~~ 136 (359)
T TIGR00912 79 GRLLSILFILYFFLIAAYLIRIFADFIKTYL--LP----RTPII----------------VIIILIIIVSIYIVRKGIEV 136 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cC----CCCHH----------------HHHHHHHHHHHHHHHccHHH
Confidence 9999999887777666666666666665432 12 23332 36667777788889999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHhhhhcccccCCCCCCCCCChHHHHHHHH-HHHhhccchHHHhhhhhhhcCCCCChhHHH
Q 008094 219 SSVLNSCMTVVKVII-VIVVIFAGAFEVDVSNWSPFAPNGFKEILTGAT-VVFFAYVGFDAVANSAEESKKPQRDLPIGI 296 (578)
Q Consensus 219 ~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~ 296 (578)
.+|++.+...+.+.. ++++........+.++..|..++|+.++..+.. ...++|.|+|......+|.||| |+.||++
T Consensus 137 i~r~~~i~~~~~i~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~ 215 (359)
T TIGR00912 137 LLRTAEILLIIFLILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSI 215 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHH
Confidence 999999999888776 344444444455677778888888888888776 8899999999999999999997 5699999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 297 LGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLK-Y---VSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (578)
Q Consensus 297 ~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 370 (578)
..+..+++++|.+......+..+.++.+ ...|..+..+....+ . ...++....+.+.+.....+++..++.+-+
T Consensus 216 ~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~ 294 (359)
T TIGR00912 216 IKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSK 294 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888775 456888888887543 2 233444455566666666677777776544
No 41
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.87 E-value=8.9e-21 Score=192.32 Aligned_cols=366 Identities=18% Similarity=0.212 Sum_probs=288.1
Q ss_pred ccccChhHHHHHHhh-hhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhc
Q 008094 58 LRRLGLFELVLIGVG-ASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~-~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g 135 (578)
+-++|||+-++...- ++.|.-+|...+++.+++|. ..++...++..+..+++++..-++++--.|+||.|..+++.+|
T Consensus 27 ~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~slg 106 (643)
T KOG2083|consen 27 PVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSLG 106 (643)
T ss_pred ceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEeccc
Confidence 456999997665433 56777789999999999998 4888888899999999999999999988889999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhh
Q 008094 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (578)
Q Consensus 136 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 215 (578)
|..|-..|..+.++..++++.+..++++.+..++.... .+.- .-++.+..+++..+|.-|
T Consensus 107 ~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s-------~~~i-------------~gi~~vt~~ill~i~~ag 166 (643)
T KOG2083|consen 107 PEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETES-------KEMI-------------DGIGSVTVLILLAINVAG 166 (643)
T ss_pred ccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcc-------HHHh-------------cchhHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999876421 1111 127778888889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-c-------------CCCCC-CCCCChHHHHHHHHHHHhhccchHHHhh
Q 008094 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-V-------------SNWSP-FAPNGFKEILTGATVVFFAYVGFDAVAN 280 (578)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~-------------~~~~~-~~~~g~~~~~~~~~~~~~~~~G~e~~~~ 280 (578)
.+...|.|.++..+.++.+.-+.+..++..+ . +|..+ +. ++ ..|+..+...+.+.+|.-+.++
T Consensus 167 ~~w~~k~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~-~~-~tfF~vf~vfFpaatgilaG~n 244 (643)
T KOG2083|consen 167 VEWEAKLQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDID-PG-YTFFSVFAVFFPAATGILAGAN 244 (643)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcC-CC-CceEeeeeeecchhhhhhcccc
Confidence 9999999999888877777666665554322 0 01111 11 22 1555566667888999999999
Q ss_pred hhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCC-----CC----hHH---HHHHHcChhHHHHHHHHH
Q 008094 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-----DA----PLS---DAFASRGLKYVSVLISFG 348 (578)
Q Consensus 281 ~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~-----~~----p~~---~~~~~~~~~~~~~~~~~~ 348 (578)
++++.|+|++++|++.+.+......+|+........+.-.+.+.. +. .+. +..+.. ......+..+
T Consensus 245 isGdL~~Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smv--S~~~Pl~~AG 322 (643)
T KOG2083|consen 245 ISGDLKDPQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMV--STFGPLITAG 322 (643)
T ss_pred ccCCCCCchhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhH--hhcccchhhH
Confidence 999999999999999999999999999888776665543332211 11 122 222222 1112234555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--hhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 008094 349 AVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGY 426 (578)
Q Consensus 349 ~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y 426 (578)
...+..++..+++.++.++++++++|+..| .+++|-.++++.|+++..+....+..+..+.+.+.+..+.+...+.+|
T Consensus 323 i~~a~LSsalsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~sy 402 (643)
T KOG2083|consen 323 ILAAELSSALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSY 402 (643)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhh
Confidence 566777778899999999999999999999 788999999999999999998888777778889999999999999999
Q ss_pred HHHHHHHhhheecCCCCCCCc
Q 008094 427 SVVSACVIALRWKDRTSRNDS 447 (578)
Q Consensus 427 ~~~~~~~~~~r~~~~~~~~~~ 447 (578)
.+...+.+..+....+.+||.
T Consensus 403 Alinf~~f~aSl~~s~~wRp~ 423 (643)
T KOG2083|consen 403 ALINFSCFHASLAISEGWRPS 423 (643)
T ss_pred hccchhhhhhhhccccccCch
Confidence 999999998888888777654
No 42
>PHA02764 hypothetical protein; Provisional
Probab=99.86 E-value=2.6e-19 Score=167.95 Aligned_cols=277 Identities=18% Similarity=0.252 Sum_probs=174.0
Q ss_pred CCCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHH-hhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhh
Q 008094 52 NDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVA-RDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYA 130 (578)
Q Consensus 52 ~~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~-~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~ 130 (578)
++.++|.|+.+.+|.+...++.+-+......+.... ...|+..+++|+++++++++.+++|+|+++++|+ +||.|.|.
T Consensus 5 ReSSGLVREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPr-AGGdYVYI 83 (399)
T PHA02764 5 RKSSGIIKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPL-NGGDYAYI 83 (399)
T ss_pred hhcCCceeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCceEEEh
Confidence 467789999999999998888763222112122222 2245568899999999999999999999999999 99999999
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHH
Q 008094 131 YTAFNELTAFLVFAQLMLDYHIGAASIARSLA-SY-VVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALL 208 (578)
Q Consensus 131 ~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (578)
+|++||..|+..||..|+.+..+.+..+-.-. +. ++..++++ .+. .-....
T Consensus 84 SRAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~~~~~i~~~~~~f--------------------------~~~-~s~~~i 136 (399)
T PHA02764 84 RTAFSSKFYTIFGISLWLTYVLSQPILGDLVLLNFNIQNQFEQF--------------------------LIV-ESLFPI 136 (399)
T ss_pred HHhhCccHHHHHHHHHHHHHHhhcchhhheeeeeeeeHHHHHHH--------------------------HHH-HHHHHH
Confidence 99999999999999999998877664432211 00 00111000 011 111112
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCChH-HHHHHHHHHHhhccchHHHhhhhhhhcC
Q 008094 209 TIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFK-EILTGATVVFFAYVGFDAVANSAEESKK 287 (578)
Q Consensus 209 ~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 287 (578)
..+-..|.+..+|...+......+ +.+.......+.. .++| ..+ ....+...-.-+|.=.|+..++++|.||
T Consensus 137 ~~~i~~~~~~~~~~v~il~~a~~i---~aif~~~~s~n~~-~~~f---~~snt~~~a~~~~l~~~~fi~a~~y~~~ei~n 209 (399)
T PHA02764 137 VLLIIANKKIYAKIVDILAIAQII---IAIFIAFKSFNFQ-YQNF---TISNTLLSALLFDLSAFIFINAISYIAGEIKN 209 (399)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHH---HHHHhhccceeEE-Ecce---eehHHHHHHHHHHHHHHHHhccHHHHHHHhhc
Confidence 223334566667765554443333 1111111111111 0111 111 3444555555566667999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 288 PQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 367 (578)
Q Consensus 288 P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 367 (578)
-+|....+-..|...+.++-++... ++ +. +.........++-+....--.||+
T Consensus 210 ~~k~~~~gyf~s~~~~~~~~ii~sy-------------~n-~~-------------il~~~~~~w~~~y~~~~~~~~srl 262 (399)
T PHA02764 210 IKKSSMIGYFVSYGIVAILSIIDSY-------------SN-LN-------------ILFALMPIWFFSYMPIANKIQSRL 262 (399)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHhh-------------hh-HH-------------HHHHHHHHHHHhheeeecchHHHH
Confidence 9999888888887776665443331 10 00 111112333344444445568999
Q ss_pred HHHHhhcCCCchhhhhhcCCCCcch
Q 008094 368 YLGLGRDGLLPSIFAKVHPKRHTPV 392 (578)
Q Consensus 368 l~~~a~d~~lP~~~~~~~~r~~~P~ 392 (578)
+++|+.|+.+|+.|+|.|| ++|+
T Consensus 263 i~~~~fd~~lpe~f~k~~~--nv~~ 285 (399)
T PHA02764 263 IQTMSFDKVLPEKFSKINP--NVLL 285 (399)
T ss_pred HHHHHhhhhchHHHhccCC--Ccee
Confidence 9999999999999999984 7887
No 43
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.83 E-value=1.5e-17 Score=168.45 Aligned_cols=336 Identities=16% Similarity=0.120 Sum_probs=249.2
Q ss_pred HhhhhhhhhHHHHHHHHHhhhCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHHHHHHH
Q 008094 70 GVGASVGAGIFVVTGTVARDAGPG---VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQL 146 (578)
Q Consensus 70 ~i~~~ig~g~~~~~~~~~~~~G~~---~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~~g~~~ 146 (578)
-++.-+|+|-+..|+..-+++|.. ++++|+++++..-+.+++ +.|+ +||.|++..+.+||..|++.+|..
T Consensus 4 lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~-~gG~~~~l~~~~g~~f~~lf~~~~ 76 (378)
T TIGR00796 4 LFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALAL-VGGGYDSLSARIGKVFGILFTVIL 76 (378)
T ss_pred HHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeee-cCCCHHHHHHHhChHHHHHHHHHH
Confidence 355668999999999988888752 678999999998887776 8998 899999999999999999999988
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHHH
Q 008094 147 MLDYHIGA-----ASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSV 221 (578)
Q Consensus 147 ~l~~~~~~-----a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 221 (578)
++..-... ++.+...+ +. |.+..+. ......+..+++..+..++++++.|...+
T Consensus 77 ~l~iGP~~aiPRtaa~s~e~~-----i~---p~~~~~~-------------~~~~l~i~siiff~i~~~l~~~~~k~~~~ 135 (378)
T TIGR00796 77 YLTIGPLFAIPRTATVSFEMG-----IA---PLLHSPT-------------SLLALFIFSLIFFAVVLLLSLNPSKLIDR 135 (378)
T ss_pred HHHHHhchhhhHHHHHHHHHH-----HH---hccCccc-------------chHHHHHHHHHHHHHHHHHHcCcccHHHH
Confidence 76543222 22222211 21 2211100 01122345566666667799999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCh-HHHHHHHHHHHhhcc-------chHHHhhhhh-hhcCCCCCh
Q 008094 222 LNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGF-KEILTGATVVFFAYV-------GFDAVANSAE-ESKKPQRDL 292 (578)
Q Consensus 222 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~-------G~e~~~~~~~-E~k~P~k~i 292 (578)
++++++.++++.++++++.++.+...+.-.+..+..- ..+..++.-..+++. |+-.+..+.+ |.|||+|+.
T Consensus 136 iGk~LTP~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~ 215 (378)
T TIGR00796 136 VGKFLTPALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKIT 215 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999887633221111111111 357778888888888 9888888888 999999999
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHHhccccccccC----CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 293 PIGILGSL-LICAALYVGVSLVLTGMVPYKFLD----EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 367 (578)
Q Consensus 293 p~a~~~s~-~~~~i~y~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 367 (578)
|+.+..+. ..+.+.|+...++..+..+.+... ..+...++.++..|+.+..++.+.+.++|+++.++...+++
T Consensus 216 ~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a-- 293 (378)
T TIGR00796 216 KYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACS-- 293 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 99999998 666777888888888877765443 23466677888888999999999999999999999887744
Q ss_pred HHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhh--heecCCCCCC
Q 008094 368 YLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIA--LRWKDRTSRN 445 (578)
Q Consensus 368 l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~--~r~~~~~~~~ 445 (578)
++|+|.++| +|+++.++...+...+.....++.+.++..-...+.|-......+. +|++.++.+|
T Consensus 294 -----------~~f~~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~ 360 (378)
T TIGR00796 294 -----------EYFHKLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRA 360 (378)
T ss_pred -----------HHHHHhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 467777754 9999988888887777777899999998877777777666555555 6766666555
Q ss_pred Ccc
Q 008094 446 DSS 448 (578)
Q Consensus 446 ~~~ 448 (578)
+++
T Consensus 361 ~y~ 363 (378)
T TIGR00796 361 VYQ 363 (378)
T ss_pred eee
Confidence 553
No 44
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.78 E-value=5.5e-16 Score=159.27 Aligned_cols=284 Identities=14% Similarity=0.081 Sum_probs=218.3
Q ss_pred HHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHH------HhhcCCCCccchhhhhHHHhchhhHH
Q 008094 67 VLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAE------LASRFPAVVGGAYLYAYTAFNELTAF 140 (578)
Q Consensus 67 ~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ae------l~~~~P~~~GG~y~~~~~~~g~~~g~ 140 (578)
....+|+.+|+|++..|.. +|...+++++++++++++.++.++. +.+..| +.+.++++++.+||..|.
T Consensus 9 ~~~l~gt~IGaGiL~LP~~----ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p--~~~i~~~~~~~fGk~~G~ 82 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQ----AGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNP--CEDITEVVEEHFGKNWGI 82 (397)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHcCHHHHH
Confidence 4467789999999999986 3555688888888877777666555 455555 489999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHH
Q 008094 141 LVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESS 220 (578)
Q Consensus 141 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 220 (578)
+.++.+++........++....+.+.+++... ...+.+. ..+..++++++...++..|.|...
T Consensus 83 ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~--~~~~~p~---------------~~i~~lilv~il~~iv~~G~~~i~ 145 (397)
T TIGR00814 83 LITLLYFFAIYPILLIYSVAITNDSASFLVNQ--LGTAPPL---------------RGLLSLALILILVAIMSFGEKLLF 145 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCcH---------------HHHHHHHHHHHHHHHHHhcHHHHH
Confidence 99999999988888888888888877765421 1111111 124666777777899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccCCCCCC--CCCChHHHHHHHHHHHhhccchHHHhhhh----hhhcCC---CCC
Q 008094 221 VLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPF--APNGFKEILTGATVVFFAYVGFDAVANSA----EESKKP---QRD 291 (578)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~G~e~~~~~~----~E~k~P---~k~ 291 (578)
|++.++...+++.++++.+...++.+.++.... ....+..+..++...+|+|.|+|....++ +|.+|| +|+
T Consensus 146 r~~~il~~~~ii~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k 225 (397)
T TIGR00814 146 KIMGPLVFPLVLILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERK 225 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHH
Confidence 999999999998888888888888777776422 22346678899999999999999999998 666655 577
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccccC----CCChHHH-HHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 292 LPIGILGSLLICAALYVGVSLVLTGMVPYKFLD----EDAPLSD-AFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSR 366 (578)
Q Consensus 292 ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~----~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 366 (578)
..|++..+..+..++|++..+.+....++++.. ++.+... ..+....+....+..+...++...+..+...+...
T Consensus 226 ~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e 305 (397)
T TIGR00814 226 CLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGARE 305 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 889999999999999999999999999887652 2222233 33345667777777777777888888887777777
Q ss_pred HHHHHhh
Q 008094 367 LYLGLGR 373 (578)
Q Consensus 367 ~l~~~a~ 373 (578)
.+..+-+
T Consensus 306 ~l~~l~~ 312 (397)
T TIGR00814 306 GLNGIVL 312 (397)
T ss_pred HHHHHHH
Confidence 7777664
No 45
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.76 E-value=1.1e-14 Score=150.02 Aligned_cols=292 Identities=17% Similarity=0.189 Sum_probs=233.8
Q ss_pred cccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchh
Q 008094 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNEL 137 (578)
Q Consensus 59 r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~ 137 (578)
|+-+.+...++.+|+.||+|++..|-.... +|- ...+..+++..++...++.++|...+.|+ ..+.-..+++.+||.
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~-~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAG-AGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-GSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhChH
Confidence 345667888899999999999999986544 454 57788888899999999999999999998 888999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhH
Q 008094 138 TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVG 217 (578)
Q Consensus 138 ~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 217 (578)
.+++.+..+.+-......++..+.++.+.++++... +.+.+++ ....++.+++..+.+.|.|
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~--~~~~~~~----------------~~~~~f~~i~~~iv~~g~~ 140 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQL--GTDLSPW----------------LSSLLFTIIFGGIVYFGTK 140 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhc--CCCCcHH----------------HHHHHHHHHHHHHHHhhHH
Confidence 999999988887666777888888888888775321 1111222 3555666777777889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCC--CCCChHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCChhHH
Q 008094 218 ESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPF--APNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIG 295 (578)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a 295 (578)
...|+++.+...+++.++++.+...++.+.++.... .+..+...+..+...+++|.-...+..+.+..++-+|++.|+
T Consensus 141 ~v~~~n~~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~a 220 (394)
T PF03222_consen 141 AVDRINRVLVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKA 220 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHH
Confidence 999999999999999999998888888777765431 235677788899999999999999999999999778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccC----CC---ChHHHHHHH-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 296 ILGSLLICAALYVGVSLVLTGMVPYKFLD----ED---APLSDAFAS-RGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 367 (578)
Q Consensus 296 ~~~s~~~~~i~y~~~~~~~~~~~~~~~~~----~~---~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 367 (578)
++.+..+..++|++....+.+..|.++.. .+ +++....++ .++++...+..+...++..+|..+...+....
T Consensus 221 i~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~ 300 (394)
T PF03222_consen 221 IIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDF 300 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988877542 22 244444444 36677888888888888888888888777776
Q ss_pred HHH
Q 008094 368 YLG 370 (578)
Q Consensus 368 l~~ 370 (578)
+..
T Consensus 301 l~d 303 (394)
T PF03222_consen 301 LAD 303 (394)
T ss_pred HHH
Confidence 644
No 46
>PRK10483 tryptophan permease; Provisional
Probab=99.69 E-value=2.6e-13 Score=138.45 Aligned_cols=296 Identities=13% Similarity=0.025 Sum_probs=219.4
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchh
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNEL 137 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~ 137 (578)
|++.+.+...++..|+.||+|.+..|-...+.+=..+.+..+++.+++...++.+.|...++|+ .-+.-..+++.+||.
T Consensus 8 ~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~-g~~~~tma~~~LG~~ 86 (414)
T PRK10483 8 QTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI-GSSFDTITKDLLGKG 86 (414)
T ss_pred cCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHcChH
Confidence 5678899999999999999999999875544332367888899999999999999999999998 778889999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhH
Q 008094 138 TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVG 217 (578)
Q Consensus 138 ~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 217 (578)
...+.+..+.+-.-....++....++.+...++.. +.+.+++ +-.+++.+++..+.+.|.|
T Consensus 87 g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~---~~~i~~~----------------~~~llF~~~~~~iv~~gt~ 147 (414)
T PRK10483 87 WNVVNGISIAFVLYILTYAYISASGSILHHTFAEM---SLNVPAR----------------AAGFGFALLVAFVVWLSTK 147 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc---CCCCcHH----------------HHHHHHHHHHHHHHHhhhh
Confidence 77766665544433445566677777777765421 1122332 3667788888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCC---CCChHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCChhH
Q 008094 218 ESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFA---PNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPI 294 (578)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ 294 (578)
...|+|+++...+++..++.+.....+.+.++..+.. +..+..++.++...+++|.=...+..+.++.++-.|++.|
T Consensus 148 ~vd~~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~ 227 (414)
T PRK10483 148 AVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVK 227 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHH
Confidence 9999999999999888887777666665554432211 1223346677888888888778888888887765568999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccC----CCC---hHHHHHHH-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 295 GILGSLLICAALYVGVSLVLTGMVPYKFLD----EDA---PLSDAFAS-RGLKYVSVLISFGAVAGLTTTLLVGLYVQSR 366 (578)
Q Consensus 295 a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~----~~~---p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 366 (578)
+++.+..+..++|++-..++.+..|.+++. .++ .+.+.+.+ .+.+....+..+...++..+|..+...+...
T Consensus 228 ~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d 307 (414)
T PRK10483 228 CLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFD 307 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999977531 122 22233333 3556777777888888888888777777776
Q ss_pred HHHHHhh
Q 008094 367 LYLGLGR 373 (578)
Q Consensus 367 ~l~~~a~ 373 (578)
.+..+-|
T Consensus 308 ~l~D~~k 314 (414)
T PRK10483 308 YLADLFG 314 (414)
T ss_pred HHHHHhC
Confidence 6665543
No 47
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.68 E-value=2.5e-13 Score=138.49 Aligned_cols=291 Identities=12% Similarity=0.072 Sum_probs=209.8
Q ss_pred ChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHH
Q 008094 62 GLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFL 141 (578)
Q Consensus 62 ~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~ 141 (578)
+.....++..|+.||+|.+..|-...+.+=..+.+..+++.+++...++.+.|....+|+ .-+.-..+++.+||....+
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~-g~~l~tma~~~LG~~g~~i 88 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV-GSSFNTITKDLIGNTWNII 88 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHcChHHHHH
Confidence 555677888999999999999875544333367888899999999999999999999998 7889999999999987776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHHH
Q 008094 142 VFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSV 221 (578)
Q Consensus 142 ~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 221 (578)
.+..+.+-.-....++..+.++.+...++.. .+.+.+. ....+++.+++..+.+.|.|...|
T Consensus 89 ~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~--~~~~i~~----------------~~~~llF~~~~~~~v~~gt~~vd~ 150 (415)
T PRK09664 89 SGITVAFVLYILTYAYISANGAIISETISMN--LGYHANP----------------RIVGICTAIFVASVLWISSLAASR 150 (415)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHhhh--ccCCCcH----------------HHHHHHHHHHHHHHHHhchhHHHH
Confidence 6665544333344566677777777765420 1112221 135677888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccCCCCCCC-CCC----hHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCChhHHH
Q 008094 222 LNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFA-PNG----FKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGI 296 (578)
Q Consensus 222 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~g----~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~ 296 (578)
.++++...+++..+..+....++.+.++..... ..+ +..+..++...+.+|.=...+..+....++-.|+++|++
T Consensus 151 ~nr~l~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaI 230 (415)
T PRK09664 151 ITSLFLGLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSV 230 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHH
Confidence 999999988888887777777776665543211 111 224555777777777767777777777776567899999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccC----CCChHH----HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 297 LGSLLICAALYVGVSLVLTGMVPYKFLD----EDAPLS----DAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 368 (578)
Q Consensus 297 ~~s~~~~~i~y~~~~~~~~~~~~~~~~~----~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 368 (578)
+.+..+..++|++...++.+..|.+++. ++.... ...+...+++...+..+...++..+|..+...+....+
T Consensus 231 l~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l 310 (415)
T PRK09664 231 VFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYL 310 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988876542 212222 23334466677777777777787777777666666555
Q ss_pred HHH
Q 008094 369 LGL 371 (578)
Q Consensus 369 ~~~ 371 (578)
..+
T Consensus 311 ~D~ 313 (415)
T PRK09664 311 ADL 313 (415)
T ss_pred HHH
Confidence 544
No 48
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.68 E-value=9.6e-14 Score=140.46 Aligned_cols=285 Identities=19% Similarity=0.301 Sum_probs=238.2
Q ss_pred ccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhH
Q 008094 60 RLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTA 139 (578)
Q Consensus 60 ~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g 139 (578)
|++.+|...+.+...+|++....|+...+.+| .++++.+++++.....++.+..+.+++|+ -..+.+.++.+||..|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~--~~l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPG--KTLVEISEKLFGKWLG 77 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHhCcHHH
Confidence 57899999999999999999999999888887 88999999999999999999999999998 6899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHH
Q 008094 140 FLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGES 219 (578)
Q Consensus 140 ~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 219 (578)
...+..+.+.+....+......++.+.... .| ++|.| .+...++++.......|.+..
T Consensus 78 ~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~--lp----~TP~~----------------~i~~~~ll~~~y~a~~G~e~i 135 (320)
T PF03845_consen 78 KIINLLYILYFLLISALVLREFSEFIKTYL--LP----ETPIW----------------VIILLFLLVAAYAARKGIEVI 135 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cC----cCCHH----------------HHHHHHHHHHHHHHhcCHHHH
Confidence 999999999888888888888888877653 22 44444 467777788888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCChHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCChhHHHHHH
Q 008094 220 SVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGS 299 (578)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s 299 (578)
+|.+.+.....++..+.+........+.++..|..+.|+..++.+.....+.|.|.|....+...+|||+ +..|....+
T Consensus 136 ~R~~~~~~~~~~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~~~k~~~~~ 214 (320)
T PF03845_consen 136 ARVAEILFPIFLILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK-KLKKSLLIA 214 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHH
Confidence 9988888888888877777777777788888898899999999999999999999999999999999975 578999999
Q ss_pred HHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 300 LLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLK----YVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (578)
Q Consensus 300 ~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 370 (578)
...++++|.+..+......+.+... ...|..+..+...-+ -...++....+.+.+......+++.++.+-.
T Consensus 215 ~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 290 (320)
T PF03845_consen 215 ILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQ 290 (320)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888877554 456888877776433 2334455555666666666777777776554
No 49
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.67 E-value=5.5e-13 Score=136.82 Aligned_cols=291 Identities=16% Similarity=0.106 Sum_probs=221.5
Q ss_pred ChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHH
Q 008094 62 GLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAF 140 (578)
Q Consensus 62 ~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~ 140 (578)
+.....++..|+.+|+|.+..|-.... +|. ......++++.++...++.++|.....|+ .-+.-..+++.+||..++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~-~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~-~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAG-VGFSVTLILLIGLWALMCYTALLLLEVYQHVPA-DTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCHHHHHHHHhChHHHH
Confidence 456677788999999999999876544 554 57777788888888899999999888887 778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHH
Q 008094 141 LVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESS 220 (578)
Q Consensus 141 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 220 (578)
+.+..+.+.......++..+.++.+.+.++.+ .+.+.+.+ ...+.+.++...+.+.|.|...
T Consensus 82 i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~--~~~~i~~~----------------~~~l~F~~~~~~iv~~g~~~v~ 143 (403)
T PRK15132 82 LTGFSMMFLMYALTAAYISGAGELLASSISDW--TGISMSPT----------------AGVLLFTLVAGGVVCVGTSSVD 143 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHh--ccCCCChH----------------HHHHHHHHHHHHHHhccHHHHH
Confidence 99999888766667778888667766655421 11111211 3455666666678888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCChHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCChhHHHHHHH
Q 008094 221 VLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSL 300 (578)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~ 300 (578)
|+++++...+++.++.......++.+.+++... +.+...+..++...+++|.=...+..+....++-+|++.|+++.+.
T Consensus 144 ~~n~~L~~~~ii~~~~~~~~l~p~~~~~~L~~~-~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs 222 (403)
T PRK15132 144 LFNRFLFSAKIIFLVVMLALMMPHIHKVNLLTL-PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGS 222 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhcC-CccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHH
Confidence 999999999888887777777777776665422 1111136677888888888888888888888877789999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccC----CCC---hHHHHHHH-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008094 301 LICAALYVGVSLVLTGMVPYKFLD----EDA---PLSDAFAS-RGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (578)
Q Consensus 301 ~~~~i~y~~~~~~~~~~~~~~~~~----~~~---p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 372 (578)
.+..++|++-...+.+..|.++.. ++. +..+.+++ .+.++...+..+...++..+|..+...+....+.++-
T Consensus 223 ~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~ 302 (403)
T PRK15132 223 AIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLF 302 (403)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887542 222 34344443 4677888888888888888888888878777777655
Q ss_pred h
Q 008094 373 R 373 (578)
Q Consensus 373 ~ 373 (578)
+
T Consensus 303 ~ 303 (403)
T PRK15132 303 Q 303 (403)
T ss_pred c
Confidence 4
No 50
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.61 E-value=4.4e-12 Score=131.74 Aligned_cols=283 Identities=17% Similarity=0.156 Sum_probs=217.7
Q ss_pred CcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc-chhhhhHHH
Q 008094 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVG-GAYLYAYTA 133 (578)
Q Consensus 56 ~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~G-G~y~~~~~~ 133 (578)
+.+++-+..+.+...+++.+|+|++..|-. .+.+|- ..++..++++.++....+++.|.....|+ .. +.+.-+++.
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a-~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~-~~~~~~~~~~~~ 81 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVA-FGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN-GKASITSLVEDY 81 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHH-hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcccHHHHHHHH
Confidence 345667777888889999999999988864 444565 47788899999999999999999999998 63 999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHH
Q 008094 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (578)
Q Consensus 134 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (578)
+||.++++.+..+.+.......++....++.+...++.. +..+. ....+..+++..++..+..
T Consensus 82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~--~~~~~---------------~~r~~~~lif~~~~~~l~~ 144 (415)
T COG0814 82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQ--FGLNP---------------LPRKLGSLIFALVLAFLSW 144 (415)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhh--cccCC---------------cchHHHHHHHHHHHHHHHH
Confidence 999999999999998887788888888888888776521 11110 1223566777777777999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCC--C-CCChHHHHHHHHHHHhhccchHHHhhhhhhhcCCCC
Q 008094 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPF--A-PNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQR 290 (578)
Q Consensus 214 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~-~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k 290 (578)
.|.+..-|.+..+...+++.++++.....++.+.++.... . +..+..++.++...+++|.+.-....+..|.|+++|
T Consensus 145 ~~~~~~lk~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~ 224 (415)
T COG0814 145 LGTLAVLKITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSK 224 (415)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchh
Confidence 9999999999999999998888888877777655544321 1 244567888999999999999999999999998887
Q ss_pred C-hhHHHHHHHHHHHHHHHHHHHHHhcccccccc-------CCCChHHHHHHH-cChhHHHHHHHHHHHHHHHHHH
Q 008094 291 D-LPIGILGSLLICAALYVGVSLVLTGMVPYKFL-------DEDAPLSDAFAS-RGLKYVSVLISFGAVAGLTTTL 357 (578)
Q Consensus 291 ~-ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~-------~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 357 (578)
+ ++|++..+..+..++|+...+....+.+.+.- .++.....+... ...+.......+....+..++.
T Consensus 225 ~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSF 300 (415)
T COG0814 225 KAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSF 300 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 7 99999999999999999999999999887622 122233343333 3444455555555555555443
No 51
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.57 E-value=2.1e-11 Score=124.52 Aligned_cols=286 Identities=12% Similarity=0.056 Sum_probs=209.7
Q ss_pred HHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCccchhhhhHHHhchhhHHHHHHH
Q 008094 68 LIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRF-PAVVGGAYLYAYTAFNELTAFLVFAQ 145 (578)
Q Consensus 68 ~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~-P~~~GG~y~~~~~~~g~~~g~~~g~~ 145 (578)
....|+.+|+|++..|-.. +.+|. ...+..+++..++......++|..... |+ +.+.-.-+++.+|+..+.+.+..
T Consensus 26 l~l~GTAIGAGmLfLPI~~-g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~-~~~i~~v~~~~lG~~g~~i~~il 103 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRA-GFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNP-SGNITETVEEHFGKTGGVVITFL 103 (443)
T ss_pred HHHHHHHHhHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCHHHHHHHHcChhHHHHHHHH
Confidence 4567899999999998653 33554 467777888888888999999999998 54 56788888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccC-CCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008094 146 LMLDYHIGAASIARSLASYVVSILELFPFFKE-NIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNS 224 (578)
Q Consensus 146 ~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 224 (578)
+.+........+.....+.+.+.+. +..+. +.+ ..+..+++.+++..+...|.|...|++.
T Consensus 104 Yff~ly~ll~aY~~~itn~l~sfl~--~ql~~~~~~----------------r~l~slifv~~l~~iv~~G~~~v~kv~~ 165 (443)
T PRK13629 104 YFFAICPLLWIYGVTITNTFMTFWE--NQLGFAPLN----------------RGFVALFLLLLMAFVIWFGKDLMVKVMS 165 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hhcCcCCcc----------------HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9988777777777676666665432 11111 112 2257888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccccCCCCCCC--------CCCh-HHHHHHHHHHHhhccchHHHhhhhhh----hc-----
Q 008094 225 CMTVVKVIIVIVVIFAGAFEVDVSNWSPFA--------PNGF-KEILTGATVVFFAYVGFDAVANSAEE----SK----- 286 (578)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~g~-~~~~~~~~~~~~~~~G~e~~~~~~~E----~k----- 286 (578)
++...+++.++.+.+..+++.+.+++.... +++. ..++.++...+++|.=.-.+..++.. .+
T Consensus 166 ~Lv~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~ 245 (443)
T PRK13629 166 YLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGR 245 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcccccc
Confidence 999999999999998888887776654211 1111 23556666667766544444433333 22
Q ss_pred -CCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC----CCCh-HHHHHHHcCh---------hHHHHHHHHHHHH
Q 008094 287 -KPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD----EDAP-LSDAFASRGL---------KYVSVLISFGAVA 351 (578)
Q Consensus 287 -~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~----~~~p-~~~~~~~~~~---------~~~~~~~~~~~~~ 351 (578)
+.+|+..|++..+..+..++|++..+.+.+..+++++. ++.+ +....+...+ +....+..+...+
T Consensus 246 ~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~ 325 (443)
T PRK13629 246 DFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALV 325 (443)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHH
Confidence 22477889999999999999999999999999988753 3445 4444555544 5677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 008094 352 GLTTTLLVGLYVQSRLYLGLGR 373 (578)
Q Consensus 352 ~~~~~~~~~~~~~sR~l~~~a~ 373 (578)
+...+..+...+..-.+..+.+
T Consensus 326 AI~TSFlGv~LGl~E~l~gl~~ 347 (443)
T PRK13629 326 AIFKSFFGHYLGTLEGLNGLIL 347 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877777777777774
No 52
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.25 E-value=8.3e-09 Score=106.62 Aligned_cols=277 Identities=16% Similarity=0.132 Sum_probs=184.6
Q ss_pred cccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc-----hhhhh
Q 008094 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGG-----AYLYA 130 (578)
Q Consensus 57 l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG-----~y~~~ 130 (578)
.+|.-++++..+-.++.++|.|+..+| .+..+.|- +.+...++.+++...++..+.+.-+..|. -.| .-+-+
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP-~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~-~~~~r~~~Y~dl~ 111 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLP-YALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEA-VPGKRRYRYPDLG 111 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhH-HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCccCCChHHHH
Confidence 457799999999999999999999888 56666775 45788888888999999888888888888 677 44445
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHH
Q 008094 131 YTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTI 210 (578)
Q Consensus 131 ~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (578)
.+++|+..-.++++...+.....+..+....++.+..+++..-. +++..+ . ....+.+.+ +.+..
T Consensus 112 ~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~-~~~~l~-~------------~~f~iif~~-i~~~~ 176 (437)
T KOG1303|consen 112 QAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSL-NDNSLD-K------------QYFIIIFGL-IVLPL 176 (437)
T ss_pred HHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccccc-c------------eehhhhHHH-HHHHH
Confidence 56788777667788777776667777788888888888764311 110000 0 001111111 11122
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC-----CCCCCCCCChHHHHHHHHHHHhhccchHHHhhhhhhh
Q 008094 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVS-----NWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEES 285 (578)
Q Consensus 211 i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~ 285 (578)
..+...+..........+..+....+....+..+.-.. ......+.+. .+.++....|+|.|.-....+-..+
T Consensus 177 s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~--~f~a~g~iaFaf~gH~v~peIq~tM 254 (437)
T KOG1303|consen 177 SQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPT--VFTALGIIAFAYGGHAVLPEIQHTM 254 (437)
T ss_pred HHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcc--hhhhhhheeeeecCCeeeeehHhhc
Confidence 22444455555555555555555555555555442111 1111112221 1668888999999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHc-ChhHHHHHHHHHHHHHHHHHHHH
Q 008094 286 KKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASR-GLKYVSVLISFGAVAGLTTTLLV 359 (578)
Q Consensus 286 k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 359 (578)
|+|+| .+|+.+.+..+++.+|+.+++.-+...+++..+ +...+. ...+.....++.+.+..+++..-
T Consensus 255 k~p~~-f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~------~il~s~~~p~~~~~~ani~i~~h~i~s~~i 322 (437)
T KOG1303|consen 255 KSPPK-FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPD------NILLSLQPPTWLIALANILIVLHLIGSYQI 322 (437)
T ss_pred CCchh-hhhHHHHHHHHHHHHHHHHHHhhhhhhccccch------hhhhcccCchhHHHHHHHHHHHHHhhhhhh
Confidence 99987 999999999999999999999988888765321 122333 35666667777777666665543
No 53
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=99.25 E-value=4.5e-09 Score=107.06 Aligned_cols=290 Identities=19% Similarity=0.261 Sum_probs=176.8
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC------ccchhhhhH
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAV------VGGAYLYAY 131 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~------~GG~y~~~~ 131 (578)
+++++.++.+..+++..+|+|=......++..+||+++..+.+++++...+.++=+-|+.+|-++ .||..+|.+
T Consensus 16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~ 95 (416)
T PF01235_consen 16 EGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIE 95 (416)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHH
Confidence 46799999999999999999999888889999999755544555566556666555566655542 588999999
Q ss_pred HHhchh-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHH
Q 008094 132 TAFNEL-TAFLVFAQLMLDYHIG-AASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (578)
Q Consensus 132 ~~~g~~-~g~~~g~~~~l~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (578)
+.+|.+ .+.+.+.+...++... ....+...++.+..-+ +.+.| ..++++.++..
T Consensus 96 ~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f--------~i~~~----------------~~gi~l~~l~~ 151 (416)
T PF01235_consen 96 KGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAF--------GIPPW----------------ITGIILAILVA 151 (416)
T ss_pred HHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhc--------cccHH----------------HHHHHHHHHHH
Confidence 998854 3444343333333222 2222222222222211 12223 36667777777
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC---------CCCCC----ChHHHH------HHHHHHHh
Q 008094 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS---------PFAPN----GFKEIL------TGATVVFF 270 (578)
Q Consensus 210 ~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~----g~~~~~------~~~~~~~~ 270 (578)
++..-|+|..+++...+..++.+.-++..+.-+.. +.++.. .|.++ |..+.. .++.=.+|
T Consensus 152 ~vi~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~-n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg~f 230 (416)
T PF01235_consen 152 LVIFGGIKRIAKVSEKLVPFMAILYILGGLIIIII-NIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARGLF 230 (416)
T ss_pred HHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhhhc
Confidence 88888999999999888887776655544432221 212211 12222 222211 12222344
Q ss_pred hc---cchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC--CCCh-HHHHHHHcChhHHHHH
Q 008094 271 AY---VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD--EDAP-LSDAFASRGLKYVSVL 344 (578)
Q Consensus 271 ~~---~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~--~~~p-~~~~~~~~~~~~~~~~ 344 (578)
+- .|....+|-+.|+++|.|.=-.++..-.+-+.++..+..+.+.....+.... +... ..++++...+++...+
T Consensus 231 SNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~ 310 (416)
T PF01235_consen 231 SNEAGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYF 310 (416)
T ss_pred cCCCCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHH
Confidence 33 4778888889999999776555554444444444555555544433222111 1122 3456666666788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008094 345 ISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (578)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~sR~l~~~a 372 (578)
+.+..++-.+++..++.+..-|.+.-+-
T Consensus 311 v~i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 311 VAIALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8888888889999998888887766654
No 54
>PLN03074 auxin influx permease; Provisional
Probab=99.20 E-value=8.2e-08 Score=101.55 Aligned_cols=238 Identities=11% Similarity=0.036 Sum_probs=129.1
Q ss_pred cccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHH----HHHhhcCCCCccchh-----h
Q 008094 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCY----AELASRFPAVVGGAY-----L 128 (578)
Q Consensus 59 r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~----ael~~~~P~~~GG~y-----~ 128 (578)
++.+..+..+-.+...+|.|++..|. ++..+|- ..++..++.+++....+..+ -|...+.|+ .+-.| .
T Consensus 44 ~~~s~~~~~~~l~~~~vG~GILaLP~-Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~-~~~~~~~~~~~ 121 (473)
T PLN03074 44 HGGSVYDAWFSCASNQVAQVLLTLPY-SFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKER-EKVDFKNHVIQ 121 (473)
T ss_pred CCchHHHHHHHHHHHHHhHHHHhHHH-HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-CCCchhHHHHH
Confidence 34455555555777889999998776 4556664 46666777777766655554 456666775 34222 2
Q ss_pred hh---HHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHH
Q 008094 129 YA---YTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILL 205 (578)
Q Consensus 129 ~~---~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (578)
|. .+.+||.++........+.....+.......+.-+. ...+. .+...|. .++..+.+
T Consensus 122 ~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~---~l~~~--~~~~~~~--------------~i~~~v~~ 182 (473)
T PLN03074 122 WFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIY---YINDN--LDKRTWT--------------YIFGACCA 182 (473)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhh---hhCCC--cCCCeEE--------------eehHHHHH
Confidence 22 234788877666443333333222222222121111 11110 0111111 11222222
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCChHHHHHHHHHHHhhccchHHHhhhhhhh
Q 008094 206 ALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEES 285 (578)
Q Consensus 206 ~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~ 285 (578)
.+. ..+..+..+.+..+.....+...+.+.+......+...++...+.++..++.++...+|+|.|.-....+-.|+
T Consensus 183 ~~~---~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M 259 (473)
T PLN03074 183 TTV---FIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAM 259 (473)
T ss_pred HHH---HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhc
Confidence 222 23334555554433333323222222222222222222221123355566777778999999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 008094 286 KKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYK 321 (578)
Q Consensus 286 k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~ 321 (578)
|||+ +.++....+...+..+|+...+..+...+++
T Consensus 260 ~~P~-~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~ 294 (473)
T PLN03074 260 WKPQ-KFKYIYLAATLYVLTLTLPSAAAVYWAFGDE 294 (473)
T ss_pred cChh-cccchHHHHHHHHHHHHHHHHHeeeeeechh
Confidence 9995 5888888888888888888777666666654
No 55
>PRK11375 allantoin permease; Provisional
Probab=99.18 E-value=7.3e-07 Score=94.85 Aligned_cols=327 Identities=11% Similarity=0.019 Sum_probs=157.1
Q ss_pred CCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc-chhhhh
Q 008094 55 EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP---GVTISFLLAGAASVLNALCYAELASRFPAVVG-GAYLYA 130 (578)
Q Consensus 55 ~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~---~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~G-G~y~~~ 130 (578)
++-+|+.++++.+.+=++..+..+-+...+..+. .|- .++++.+++.++........+. .-++ .| +.....
T Consensus 21 p~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~-~GLs~~~ai~ai~lG~~i~~~~~~l~g~---~G~~-~Gl~~~v~s 95 (484)
T PRK11375 21 TQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFI-LGLSTFSIMLAIILSAFFIAAVMVLNGA---AGSK-YGVPFAMIL 95 (484)
T ss_pred CccccCCcHHHHHHHHHHHhccHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHHHHHHhcc---cccc-cCCChhHhH
Confidence 3446789999998887777665444433333332 232 3556656655554444444444 4444 34 355566
Q ss_pred HHHhchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh-cccccCCCCccccCCCccccccchhhhHHHHHHHHHH
Q 008094 131 YTAFNELTAFLVFAQLM-LDYHIGAASIARSLASYVVSILEL-FPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALL 208 (578)
Q Consensus 131 ~~~~g~~~g~~~g~~~~-l~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (578)
+..||.+-+.+.+.... +..+...+......++.+..+++. .|.+.+ .+..... ..-+....+..+++.++.
T Consensus 96 R~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~-~~~~~~~-----~g~~~~~~i~~~i~~~l~ 169 (484)
T PRK11375 96 RASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLT-LGGDFTL-----LGLSLPGLITFLIFWLVN 169 (484)
T ss_pred HHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-ccccccc-----CCCcHHHHHHHHHHHHHH
Confidence 66789876666666553 344444555556666666655432 232211 1100000 000111122334445555
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCC-------ChHHHHHHHHHHHhhcc-chHHHhh
Q 008094 209 TIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPN-------GFKEILTGATVVFFAYV-GFDAVAN 280 (578)
Q Consensus 209 ~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~-G~e~~~~ 280 (578)
..+...|.|...+++.+...+.++..+.+.+..+...+.+......|. ....+..++...+-.+. +.-..+.
T Consensus 170 ~~~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D 249 (484)
T PRK11375 170 VGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASD 249 (484)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccc
Confidence 666678889999988888877766555554443333222211111111 11234444433222333 3334566
Q ss_pred hhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHH-hccccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHH-
Q 008094 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVL-TGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLL- 358 (578)
Q Consensus 281 ~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 358 (578)
++...|+|| +.-++...+..+...+.....+.. ......-.....+| .+++.+.+......+..+..+++..++..
T Consensus 250 ~tRy~k~~~-~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp-~~i~~~~~~~~~~~~a~l~~v~a~~~tN~~ 327 (484)
T PRK11375 250 FTQNAHSFR-AQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNV-LDIVQRWDSLFASFFAVLVILMTTISTNAT 327 (484)
T ss_pred hhcccCChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCH-HHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 777778764 444565555555444432222222 11111101112333 44445444444444445555666666543
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHh
Q 008094 359 VGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAG 407 (578)
Q Consensus 359 ~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~ 407 (578)
...++.+- .-.+.+||+. |.| ++.++..+++.++..
T Consensus 328 ~N~ys~~~-----~l~~l~pk~i---~~~-----~~~~i~~iig~~~~p 363 (484)
T PRK11375 328 GNIIPAGY-----QIAALAPTKL---TYK-----NGVLIASIISLLICP 363 (484)
T ss_pred hhcccHHH-----HHHHhCcCcc---chh-----hHHHHHHHHHHHhcc
Confidence 34444433 3345777643 312 244555555554443
No 56
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.16 E-value=1.5e-07 Score=95.80 Aligned_cols=347 Identities=14% Similarity=0.143 Sum_probs=202.1
Q ss_pred cccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc--HHHHHHHHHHHHH---HHHHHHHHHHhhcCCCC-----------
Q 008094 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP--GVTISFLLAGAAS---VLNALCYAELASRFPAV----------- 122 (578)
Q Consensus 59 r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~--~~~~~~ii~~l~~---~~~a~~~ael~~~~P~~----------- 122 (578)
+..+..+...=-+-.++|+|++..|. +.+.+|- +.+...+++.+.. ....-+.-+++++.-+.
T Consensus 45 ~~~s~~~tl~hl~k~~iGtG~l~lP~-AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 45 HPTSATQTLIHLLKGSIGTGILSLPL-AFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCchHHHHHHHHHhhhccccccChH-HHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 34677777666677899999987776 5666775 3444445554443 33555667777765331
Q ss_pred ccchhhhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHH
Q 008094 123 VGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAP 202 (578)
Q Consensus 123 ~GG~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (578)
..+.|.| -|-+||...+++-....+++...++.+....++-+.++.+.. .... ....+...
T Consensus 124 ~~~~~~~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~-----~~~~-------------~s~~~~i~ 184 (449)
T KOG1304|consen 124 MEGGPGW-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH-----SPGV-------------LSVRLYIL 184 (449)
T ss_pred HcCCcHH-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc-----CCCC-------------ccHHHHHH
Confidence 1122234 566899999999999999998888888889999888887610 0011 11222333
Q ss_pred HHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-cCCCCCCCCCChHHHHHHHHHHHhhccchHHHhh
Q 008094 203 ILLALLTIVL-CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-VSNWSPFAPNGFKEILTGATVVFFAYVGFDAVAN 280 (578)
Q Consensus 203 ~~~~~~~~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~ 280 (578)
+.......+| .+..|...-+..+.-++.++.++++..-.+.... .+....+ .++.++...+.+++|+|-|.-.+-.
T Consensus 185 ~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~--~~~~~~~lf~GtaifafEGig~VLP 262 (449)
T KOG1304|consen 185 IQLPPLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAV--TGWSGLPLFFGTAIFAFEGIGMVLP 262 (449)
T ss_pred HHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccc--cchhhhHHHHHHHHHHhccceEEEe
Confidence 3333333333 2444554444444444444444443332222211 1111112 2366777788899999999999999
Q ss_pred hhhhhcCCCCChh---HHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q 008094 281 SAEESKKPQRDLP---IGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (578)
Q Consensus 281 ~~~E~k~P~k~ip---~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (578)
+=+++|+|+ +.| +.+-.++.++.++|....+.-+...+++.-++- .-+....++...+.+...++.+-+.
T Consensus 263 lEn~Mk~P~-~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sI------TLNLP~~~l~~~Vkl~~ai~I~ls~ 335 (449)
T KOG1304|consen 263 LENSMKKPQ-KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSI------TLNLPQEILSQTVKLLLAIAIFLTY 335 (449)
T ss_pred hhhcccChh-hcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceE------EecCCccHHHHHHHHHHHHHHHHcC
Confidence 999999995 577 999999999999999999988888877643220 0112224445555555566666555
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHh-hcCHHHHHHHHHHHH--HHHHHHHHHHHh
Q 008094 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAG-LFNVRVLSHILSVGT--LTGYSVVSACVI 434 (578)
Q Consensus 358 ~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~-~~~~~~l~~~~~~~~--l~~y~~~~~~~~ 434 (578)
--.++-.-++++.- +.+++++ ++++=.++.-=....+++.+++. +-+++.++++..... .+.++++.+--+
T Consensus 336 pLQ~yv~~eIi~~~-----i~~k~~~-~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel 409 (449)
T KOG1304|consen 336 PLQFYVPIEIIEPG-----IRKKFSE-NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIEL 409 (449)
T ss_pred chhhhhhHHHHHHh-----HHHhcCc-chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHH
Confidence 56666777777653 2222221 10000111111122222222222 457788888776544 456666666555
Q ss_pred hheecC
Q 008094 435 ALRWKD 440 (578)
Q Consensus 435 ~~r~~~ 440 (578)
...+..
T Consensus 410 ~~~~~~ 415 (449)
T KOG1304|consen 410 ITFYPE 415 (449)
T ss_pred HHhccc
Confidence 444443
No 57
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=99.14 E-value=9e-11 Score=81.45 Aligned_cols=51 Identities=45% Similarity=0.749 Sum_probs=49.7
Q ss_pred ccccccchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhccccc
Q 008094 510 FSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHA 560 (578)
Q Consensus 510 ~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 560 (578)
||+|..|++|.++++.|++++.+++..+|+.+++|+++|+++|+.||+||+
T Consensus 1 F~vP~vP~~P~~si~~ni~Lm~~L~~~twirf~iWl~iGl~iYf~YG~~hS 51 (51)
T PF13906_consen 1 FKVPLVPFLPALSILINIYLMAQLSALTWIRFGIWLAIGLVIYFGYGIRHS 51 (51)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHheeeecC
Confidence 789999999999999999999999999999999999999999999999986
No 58
>PTZ00206 amino acid transporter; Provisional
Probab=99.14 E-value=3.7e-07 Score=96.95 Aligned_cols=245 Identities=15% Similarity=0.153 Sum_probs=148.8
Q ss_pred ChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHH
Q 008094 62 GLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAF 140 (578)
Q Consensus 62 ~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~ 140 (578)
|..+..+-.+.+++|+|++..|.. ++.+|- ..++..++.++++......+.+.+.+-+ .-...+-+++.+||...+
T Consensus 61 g~~~s~fnL~~~~iGaGILsLP~A-f~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~--~~sY~~la~~~~G~~g~~ 137 (467)
T PTZ00206 61 GIAASAFNIASSTVGAGIVGLPSA-ANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTN--IRTYEGVARVLLGPWGSY 137 (467)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCHHHHHHHHhCHHHHH
Confidence 445566666678899999997764 556675 4666666777777666667777666533 345556666679999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHH
Q 008094 141 LVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESS 220 (578)
Q Consensus 141 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 220 (578)
++.....+.....+.++....++.+..++...+ .+++..... .... ......+.+.+-+...+.++..+
T Consensus 138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~-----~~~~~~~~~----~~r~--~~~~i~~~i~lPLs~~r~i~~L~ 206 (467)
T PTZ00206 138 YVAATRAFHGFSACVAYVISVGDILSATLKGTN-----APDFLKQKS----GNRL--LTSLMWLCFMLPLVIPRHIDSLR 206 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----ccchhhhcc----CcEE--eeeehhhhHhhhcccccchHHHH
Confidence 998888887777777888888888777654211 111111000 0000 00111111122222345556666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccCCCC-----C-------CCCCChHHHHHHHHHHHhhccchHHHhhhhhhhcCC
Q 008094 221 VLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS-----P-------FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKP 288 (578)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~-------~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P 288 (578)
++..+.....+...+.+++.......+++.+ + ..+.+ .....++....|+|.+......+-+|+|||
T Consensus 207 ~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~~~algi~~faF~~h~~~~~i~~~M~~~ 285 (467)
T PTZ00206 207 YVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSG-NRAIEGLGVFIFAYVFQITAYEVYMDMTNR 285 (467)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCc-hHHHhhhhHHHhhhhhhhhhHHHHHhhccc
Confidence 6554443332222222222111111111110 0 00111 256778888999999999999999999987
Q ss_pred C-CChhHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 008094 289 Q-RDLPIGILGSLLICAALYVGVSLVLTGMVPYK 321 (578)
Q Consensus 289 ~-k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~ 321 (578)
. |+..+.+..+..++.++|.+..+.-+...+++
T Consensus 286 t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 286 SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 4 67888999999999999999999888877755
No 59
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=99.06 E-value=8.3e-07 Score=89.61 Aligned_cols=290 Identities=20% Similarity=0.271 Sum_probs=184.5
Q ss_pred cccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCC------ccchhhh
Q 008094 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAV------VGGAYLY 129 (578)
Q Consensus 57 l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~a~~~ael~~~~P~~------~GG~y~~ 129 (578)
-++.++..++...+++..+|+|=......+...+||+ .+|.|+. +++...+.+.=+-|+..|.++ .||.-+|
T Consensus 59 ~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~-Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yY 137 (452)
T COG1115 59 GKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIV-ALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYY 137 (452)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHH-HHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHH
Confidence 3577999999999999999999888888889999996 5555555 555556666555677776643 5788999
Q ss_pred hHHHhc-hhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHH
Q 008094 130 AYTAFN-ELTAFLVFAQLMLDYH-IGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLAL 207 (578)
Q Consensus 130 ~~~~~g-~~~g~~~g~~~~l~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (578)
.++.+| |..|.+.+....+++. .....-+...++.+..-++ .|.| +.++++.++
T Consensus 138 i~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~--------~~~~----------------~~gi~la~l 193 (452)
T COG1115 138 IEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFG--------IPPL----------------VTGIVLALL 193 (452)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcC--------CcHH----------------HHHHHHHHH
Confidence 999987 4566666666666655 3555556666666655433 2222 467777788
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC---------CCCCC----ChH------HHHHHHHHH
Q 008094 208 LTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS---------PFAPN----GFK------EILTGATVV 268 (578)
Q Consensus 208 ~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~----g~~------~~~~~~~~~ 268 (578)
...+-.-|+|..+++.........+.-++..+.-+.. +.+... .|.+. |+. .+..++.=.
T Consensus 194 ~~~VI~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~-n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RG 272 (452)
T COG1115 194 VALVIFGGIKRIAKVSSKVVPFMAILYVLVALVIIVL-NISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRG 272 (452)
T ss_pred HHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHH
Confidence 8888889999999998888777665544433221111 111110 12121 221 222333334
Q ss_pred Hhhc---cchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC--CCChH-HHHHHHcChhHHH
Q 008094 269 FFAY---VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD--EDAPL-SDAFASRGLKYVS 342 (578)
Q Consensus 269 ~~~~---~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~--~~~p~-~~~~~~~~~~~~~ 342 (578)
.|+- .|....++-+.++++|.|.=-..+....+=+.++.....+.+...-.++..+ +...+ .+++++..+.+..
T Consensus 273 lfSNEAGmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~ 352 (452)
T COG1115 273 LFSNEAGMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGS 352 (452)
T ss_pred hhcccccCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHH
Confidence 4544 3666677778888888665433333333324444444444444433332222 22233 3566777778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008094 343 VLISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (578)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 372 (578)
.++.+..++-.+++..++.+..-|.+.-+.
T Consensus 353 ~fv~i~l~lFafTTIlg~yyyge~~~~fl~ 382 (452)
T COG1115 353 YFVAIALFLFAFTTILGWYYYGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999888888776655
No 60
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=99.06 E-value=3.7e-07 Score=93.81 Aligned_cols=286 Identities=19% Similarity=0.275 Sum_probs=162.5
Q ss_pred cccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcH-HHHHHHHHHHHHHHHHHHHHHHhhcCC---CC---ccchhhhhH
Q 008094 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFP---AV---VGGAYLYAY 131 (578)
Q Consensus 59 r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~a~~~ael~~~~P---~~---~GG~y~~~~ 131 (578)
++++.+++.+..++..+|.|=......++..+||+ .+|.|+.+ ++...+.+.-.-++.++- ++ .||.-+|.+
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~a-llGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~ 123 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTA-FIGMATKFVESTLAQKYRERDADGVFRGGPMYYIK 123 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHH-HHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHH
Confidence 56999999999999999998444444458889996 55555444 444444444444444433 21 234447888
Q ss_pred HHhc-hhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHH
Q 008094 132 TAFN-ELTAFLVFAQLMLDY-HIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (578)
Q Consensus 132 ~~~g-~~~g~~~g~~~~l~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (578)
+.++ |++|.+.+.. .+.+ ...........++.+...+ +.+.| +..+++.++..
T Consensus 124 ~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~--------~~~~~----------------v~~i~l~~l~~ 178 (425)
T TIGR00835 124 KGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAF--------NVPKL----------------VTGIVLTVLTA 178 (425)
T ss_pred HHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHc--------CCcHH----------------HHHHHHHHHHH
Confidence 8765 7777776655 4444 3333334444444443211 12333 35556666666
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC---------CCCCC----ChHH------HHHHHHHHHh
Q 008094 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS---------PFAPN----GFKE------ILTGATVVFF 270 (578)
Q Consensus 210 ~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~----g~~~------~~~~~~~~~~ 270 (578)
.+..-|+|...++......+.....++..+.-.. .+.++.. .|.++ |..+ +..++.=..|
T Consensus 179 ~vi~GGik~Ia~v~~~lvP~m~~~Y~~~~l~ii~-~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~f 257 (425)
T TIGR00835 179 LIIFGGLKRIAKISSVVVPFMALLYVIMALYIII-MNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLF 257 (425)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHh
Confidence 6666699999999999888877766544432221 1222221 12222 2222 1113333444
Q ss_pred hc---cchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhcccccc---ccCCCChHH-HHHHHcChhHHHH
Q 008094 271 AY---VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYK---FLDEDAPLS-DAFASRGLKYVSV 343 (578)
Q Consensus 271 ~~---~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~---~~~~~~p~~-~~~~~~~~~~~~~ 343 (578)
+- .|....+|-+.|+++|.|.=-.++..-.+=+.++.....+.+.....++ .+ +...+. ++++...+.+...
T Consensus 258 SNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~-~g~~lt~~af~~~~g~~g~~ 336 (425)
T TIGR00835 258 SNEAGMGSAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGL-SGAQLTQQALSYGLGSFGAV 336 (425)
T ss_pred ccccccCcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCC-cHHHHHHHHHHHHhhhhHHH
Confidence 43 4777788888999999765444443333323333444444333322222 11 112232 4455555567788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008094 344 LISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (578)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 372 (578)
++.+..++-.+++..++.+..-+.+.-+-
T Consensus 337 ~v~i~~~lFaftTii~~~yyge~~~~yl~ 365 (425)
T TIGR00835 337 FVAVALFLFAFSTIIGWYYYGEKNAEFLK 365 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888899999998888777766653
No 61
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.91 E-value=4.3e-06 Score=80.91 Aligned_cols=263 Identities=18% Similarity=0.174 Sum_probs=161.1
Q ss_pred HHHHhhhhhhhhHHHHHHHHHhhhCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHHHH
Q 008094 67 VLIGVGASVGAGIFVVTGTVARDAGP---GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVF 143 (578)
Q Consensus 67 ~~~~i~~~ig~g~~~~~~~~~~~~G~---~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~~g 143 (578)
.+..++.++|+|.- +-.+..+..|+ ..+++.++++++....+....|+++++.. ...-.+.++.+||.++-+.-
T Consensus 9 ~f~~ig~~vGAGfA-sGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a--~~y~~~~~~v~~~~~~ki~d 85 (349)
T COG3949 9 AFAFIGTVVGAGFA-SGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNA--TSYREILKYVSGPKFAKIID 85 (349)
T ss_pred HHHHHHHhhccccc-chHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHhhHHHHHHHH
Confidence 34556788888743 44446666555 48999999999999999999999999985 67778889999999987765
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhh-hHHHHH
Q 008094 144 AQLMLDYHIGAASIARSLAS-YVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG-VGESSV 221 (578)
Q Consensus 144 ~~~~l~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g-~~~~~~ 221 (578)
....+ +....+.+..+.+. .+.+.++ .|.|. -++++++.......++ ++..-+
T Consensus 86 ~~iif-~lf~~~vVM~AGags~~~e~~~--------lP~wi----------------Gali~i~~v~i~lfl~~vegi~t 140 (349)
T COG3949 86 IIIIF-FLFSTAVVMLAGAGSLLEEMFG--------LPYWI----------------GALIIILLVLILLFLGRVEGIIT 140 (349)
T ss_pred HHHHH-HHHHHHHHHhccchhHHHHHhC--------ccHHH----------------HHHHHHHHHHHHHHHhcccceee
Confidence 43333 34444455555444 5555443 34553 3355555555555555 777777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccC--CCCCC-CCCChHHHHHHHHHHHhhc-cchHHHhhhhhhhcCCCCChhHHHH
Q 008094 222 LNSCMTVVKVIIVIVVIFAGAFEVDVS--NWSPF-APNGFKEILTGATVVFFAY-VGFDAVANSAEESKKPQRDLPIGIL 297 (578)
Q Consensus 222 ~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~-~~~g~~~~~~~~~~~~~~~-~G~e~~~~~~~E~k~P~k~ip~a~~ 297 (578)
++.+.+.+.++.+........+....+ +++.- .++...+.. + ...+.. ...-....+++|+|++ |+..+|-.
T Consensus 141 vn~iI~P~LIi~l~~v~~~~~f~~~~~~a~~~~~~~~~W~~~~~-~--Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l 216 (349)
T COG3949 141 VNGIITPFLIIILVLVTLSFQFTNLGNAAQIVLTKQGNWKASAV-G--YGALNILVAVAVLVPLGGRMESR-KVSGIGGL 216 (349)
T ss_pred eheeHHHHHHHHHHHHHHHHHHhhccchhhhcCCcCCChHHHHH-h--hhhHHHHhHhHhhhhhccccccc-chhhhhhh
Confidence 777666665554333222222211111 11111 122221111 0 111111 2334456777999985 67778877
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 298 GSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYV 363 (578)
Q Consensus 298 ~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (578)
.+-++.+++..+.........| +..+.|-|..+++.+.. +....++.+...+...++..+.+++
T Consensus 217 ~gglIlgvl~~l~nlsLi~~~~-~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~ 280 (349)
T COG3949 217 IGGLILGVLLFLINLSLIALYD-KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYG 280 (349)
T ss_pred hhhHHHHHHHHHHHHHHHhhcc-hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777666555 44456779999988886 5555566666666677766666655
No 62
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.90 E-value=3.3e-05 Score=79.45 Aligned_cols=242 Identities=13% Similarity=0.097 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008094 94 VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFP 173 (578)
Q Consensus 94 ~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~ 173 (578)
++++.+++-++........++++..... -+..-.+..||..-+.+.....++.+.-..+.+....++....
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Gl---pqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~------ 124 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGL---PQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGS------ 124 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCC---ChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhcccccc------
Confidence 5666666666655555555555544443 1333344458888887777777766655555555555444111
Q ss_pred cccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-cCCCCC
Q 008094 174 FFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-VSNWSP 252 (578)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~ 252 (578)
.++.+.| ...++..++.++....|.|...+++++.....+...+.......-..+ .+....
T Consensus 125 --~~~~~~~----------------~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~ 186 (442)
T COG1457 125 --GTGLPVW----------------AGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWV 186 (442)
T ss_pred --CCCCcHH----------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeec
Confidence 1122222 345555666777788999999999999888876665555443332111 111111
Q ss_pred CCCCChHHHHHHHHHHHhhccch-HHHhhhhhhhcCCC--CChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChH
Q 008094 253 FAPNGFKEILTGATVVFFAYVGF-DAVANSAEESKKPQ--RDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPL 329 (578)
Q Consensus 253 ~~~~g~~~~~~~~~~~~~~~~G~-e~~~~~~~E~k~P~--k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~ 329 (578)
-.|....++..++..++-.+..+ -.++.++.-.|+|+ |.+--+.....+-....+++.... ....+.+ + +.
T Consensus 187 ~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~-a~a~g~~----~-~~ 260 (442)
T COG1457 187 KGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAAL-AAAAGNA----D-SI 260 (442)
T ss_pred cCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCC----c-hH
Confidence 11444456666555544444333 44566777777765 322222222222222333333332 2222322 2 45
Q ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 330 SDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (578)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 370 (578)
.+.....|+ +.....+.+.++..++..-.+++++=-..+
T Consensus 261 ~~~~~~~G~--~g~~~~lil~l~~~ttN~~nlYsa~ls~~~ 299 (442)
T COG1457 261 ADVMLGLGG--FGLPAILILVLGTVTTNANNLYSAGLSFAN 299 (442)
T ss_pred HHHHHhccc--HHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 555555554 334444555666666655555555543333
No 63
>PRK11017 codB cytosine permease; Provisional
Probab=98.77 E-value=0.00033 Score=73.20 Aligned_cols=215 Identities=13% Similarity=0.123 Sum_probs=108.6
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc-hhhhhHHHhc
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGG-AYLYAYTAFN 135 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG-~y~~~~~~~g 135 (578)
+|+ ++++....-++..+....+...+.....-+. .++++.+++.++........+..+ |+ .|= .....+..||
T Consensus 8 ~r~-~~~~~~~~~~g~~~~~~~~~~g~~l~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G---~k-~G~~~~v~sR~~FG 82 (404)
T PRK11017 8 ARK-GVLSLTMVMLGFTFFSASMWAGGTLGTGLSFVDFLLAVLIGNLLLGIYTAALGYIG---AK-TGLSTHLLARFSFG 82 (404)
T ss_pred Hhc-chHhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hc-cCcCHHHHHHHHhc
Confidence 455 8888766666655443333333332111222 467777777665544444444444 44 343 4445566689
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhh
Q 008094 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (578)
Q Consensus 136 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 215 (578)
.+-+.+.+....+..+...+......+..+....+. +.+ ...+++.++.......|
T Consensus 83 ~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~--------~~~----------------~~~~i~~~l~~~~~~~G 138 (404)
T PRK11017 83 EKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGL--------DIN----------------LLIVLSGLLMTVTAYFG 138 (404)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC--------CHH----------------HHHHHHHHHHHHHHHHH
Confidence 887777766666655544444444444444433210 000 12333445555666788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-cCCCCCCCCCChHHHHHHHHHHHhh-ccchHHHhhhhhhhcCCCCChh
Q 008094 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-VSNWSPFAPNGFKEILTGATVVFFA-YVGFDAVANSAEESKKPQRDLP 293 (578)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~-~~G~e~~~~~~~E~k~P~k~ip 293 (578)
.|...+++++......+..+...+....+.+ .+......+.+...+..++...+-. ..+.-..+.++...|+||+. -
T Consensus 139 ~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~-~ 217 (404)
T PRK11017 139 ISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIA-V 217 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccce-e
Confidence 8888888888777766655544433322211 1111111122222444444332222 23445566788888876543 3
Q ss_pred HHHHHHHHH
Q 008094 294 IGILGSLLI 302 (578)
Q Consensus 294 ~a~~~s~~~ 302 (578)
.+...+..+
T Consensus 218 ~~~~lg~~i 226 (404)
T PRK11017 218 LATMVAFFL 226 (404)
T ss_pred ehhHHHHHH
Confidence 444444433
No 64
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.60 E-value=0.00087 Score=71.96 Aligned_cols=281 Identities=14% Similarity=0.151 Sum_probs=136.8
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHH-HHHHhhhCcH-HHHHH---HHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHH
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVT-GTVARDAGPG-VTISF---LLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~-~~~~~~~G~~-~~~~~---ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~ 132 (578)
.|+++++-..+-..++.++++-+... +.++.. |-. .+++. ....+.....+.-+.++.++.. .=..++|.++
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~T~~e~l~~ 116 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKY-GLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN--AVTLNDMLRA 116 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CccHHHHHHH
Confidence 57888887766666666666555444 444443 432 22211 1111122223334555666653 4578888888
Q ss_pred Hhchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHH
Q 008094 133 AFNEL-TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIV 211 (578)
Q Consensus 133 ~~g~~-~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (578)
-||+. .....+....+..+...+....+.+..++.+++. | .+. . +.+...++..+.
T Consensus 117 Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi-~-------~~~------------~---iii~~~iv~iYt 173 (483)
T PRK09442 117 RYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGI-S-------YET------------G---LLIFGITVALYT 173 (483)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C-------HHH------------H---HHHHHHHHHHHH
Confidence 88854 5666666555555555556666666666665432 1 110 1 111122223333
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhc-------------ccccCCCCCCCCCChH--HHHHH-HHHHHhhccch
Q 008094 212 LCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF-------------EVDVSNWSPFAPNGFK--EILTG-ATVVFFAYVGF 275 (578)
Q Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~-------------~~~~~~~~~~~~~g~~--~~~~~-~~~~~~~~~G~ 275 (578)
..-|.|.......+-.++.++..+++.+.... ..+++.+++..+.++. ..... .........+.
T Consensus 174 ~~GGl~av~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 253 (483)
T PRK09442 174 AFGGFRAVVLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGL 253 (483)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCC
Confidence 44455555544443333333332222211111 0111111222222211 11111 11112222333
Q ss_pred HHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHh---ccccccccCCCChHHHHHHHcChhHHHHHHHHHHHHH
Q 008094 276 DAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLT---GMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAG 352 (578)
Q Consensus 276 e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~---~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 352 (578)
....+-.=..||+ |+..|+.+.+.+....+++...+.-. ...|+ .-+.+..+.....+..++++..++..+++.+
T Consensus 254 p~~~qR~~aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~-~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA 331 (483)
T PRK09442 254 PHTAVRCMSYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPD-LTVPDKVIPTLMLKVLPPFAAGIFLAAPMAA 331 (483)
T ss_pred CHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccchHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 3333333346775 57788888777666665544433221 11232 1123455666677777888888888888888
Q ss_pred HHHHHHHHHHHHHH
Q 008094 353 LTTTLLVGLYVQSR 366 (578)
Q Consensus 353 ~~~~~~~~~~~~sR 366 (578)
.+++..+.+.+.+=
T Consensus 332 ~mST~~s~l~~~ss 345 (483)
T PRK09442 332 IMSTVDSQLLQSSS 345 (483)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777765554
No 65
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=98.58 E-value=1.3e-08 Score=107.03 Aligned_cols=355 Identities=12% Similarity=0.081 Sum_probs=194.6
Q ss_pred cccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CccchhhhhHHHhc
Q 008094 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPA--VVGGAYLYAYTAFN 135 (578)
Q Consensus 59 r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~--~~GG~y~~~~~~~g 135 (578)
||-++++..+..+..++|+|++..|... ..+|- ..++..++.++++......+.|.....|+ +.-..-+-+++.+|
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af-~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G 79 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAF-AQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFG 79 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHH-HHhhhhhhhHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 4578899999999999999999888754 44665 57777788888888888899999988762 02333344466799
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC-CCCccccCCCccccccchhhhHHHHHHHHHHHHHH-H
Q 008094 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKE-NIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL-C 213 (578)
Q Consensus 136 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~ 213 (578)
|+.++++.....+........+....++.+..+..... ++ ..... ...++..++..-+. .
T Consensus 80 ~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~--~~~~~~~~----------------~~~~i~~~i~~pls~~ 141 (409)
T PF01490_consen 80 PKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFF--GDLFISRY----------------VWIIIFALIVLPLSFL 141 (409)
T ss_pred ccccccccchheeccccccceeEEEeeeeeeccccccc--cccccccc----------------cccccccccccccccc
Confidence 99888887776666555555555555555555433110 00 00000 11111222222222 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc--cccCCCCC---CCCCChHHHHHHHHHHHhhccchHHHhhhhhhhcCC
Q 008094 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFE--VDVSNWSP---FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKP 288 (578)
Q Consensus 214 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P 288 (578)
+..+..+..+.+.....+..+.+........ .+..+... ..+..+.++..++....++|.+......+.+|+|+|
T Consensus 142 ~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~ 221 (409)
T PF01490_consen 142 KNLKSLRYLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDP 221 (409)
T ss_pred chhhHHHHHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCC
Confidence 2333333333222222221111111111111 11111111 122345688889999999999999999999999998
Q ss_pred CC--ChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 289 QR--DLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLK-YVSVLISFGAVAGLTTTLLVGLYVQS 365 (578)
Q Consensus 289 ~k--~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s 365 (578)
+| +..++...+...+.++|.+..+......+++.- + ++..+.... +...+..+...+....+..-..+...
T Consensus 222 ~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~-~-----~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~ 295 (409)
T PF01490_consen 222 SKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQ-G-----NILLNLPNDDVLIIIARILLVISLLLSYPLQLFPAR 295 (409)
T ss_pred ccccccceeeeehhhhhhHHhhhhhhcccceeeeeec-c-----hhhhcCCCcccccccccccchhhhhhccccccchhH
Confidence 65 455999999999999999999988877765421 1 122333222 23333444444444444434444445
Q ss_pred HHHHHHhhcC-----CCchhhhh-hcCCCCcchhHHHHHHHHHHHHH-hhcCHHHHHHHHHHH--HHHHHHHHHHHHhhh
Q 008094 366 RLYLGLGRDG-----LLPSIFAK-VHPKRHTPVHSQVWVGIVAGILA-GLFNVRVLSHILSVG--TLTGYSVVSACVIAL 436 (578)
Q Consensus 366 R~l~~~a~d~-----~lP~~~~~-~~~r~~~P~~ail~~~~i~~i~~-~~~~~~~l~~~~~~~--~l~~y~~~~~~~~~~ 436 (578)
+.+...-+++ ..++.-.+ ...|.... ....+++.+++ ..-+++.+.++.+.. ..+.|+++....++.
T Consensus 296 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~ 371 (409)
T PF01490_consen 296 NSLENLLFKRAASSRDSPKNTPSSRWLRYLIR----IILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKL 371 (409)
T ss_pred hhhhhheeccccccccccccccccceeeeeee----cchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHh
Confidence 5555444321 11110000 00011111 11112222222 223566666655433 357899999888887
Q ss_pred eecCCC
Q 008094 437 RWKDRT 442 (578)
Q Consensus 437 r~~~~~ 442 (578)
+++++.
T Consensus 372 ~~~~~~ 377 (409)
T PF01490_consen 372 FKRKRN 377 (409)
T ss_pred hccccc
Confidence 766543
No 66
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.50 E-value=0.0013 Score=69.61 Aligned_cols=113 Identities=9% Similarity=-0.015 Sum_probs=72.6
Q ss_pred CcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhh-Cc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHH
Q 008094 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDA-GP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (578)
Q Consensus 56 ~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~-G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~ 133 (578)
+-+|+.++++...+-++..+...-+..-+.....+ +. .++++.+++.++........+..+.++-. ......+..
T Consensus 9 ~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl---~~~v~sR~~ 85 (442)
T TIGR00800 9 EEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGL---PFPVLSRAS 85 (442)
T ss_pred cccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCC---Ccchhhhhh
Confidence 34577899998888777765543343333333221 22 36666666666555544445555544443 355666777
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008094 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILEL 171 (578)
Q Consensus 134 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~ 171 (578)
||.+-+.+.+...++..+...+..+...++.+..+++.
T Consensus 86 FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~ 123 (442)
T TIGR00800 86 FGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDS 123 (442)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99888888888888887777788888888877776653
No 67
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.39 E-value=0.0045 Score=64.15 Aligned_cols=364 Identities=14% Similarity=0.100 Sum_probs=179.3
Q ss_pred CCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhC-c-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhh
Q 008094 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAG-P-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYA 130 (578)
Q Consensus 53 ~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G-~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~ 130 (578)
..++.+|+.++++-+.+=.+.+...+-+...+...+.+. + .++++.+++-++....+..-+..++++-. ..-.-.
T Consensus 33 P~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gI---pFpv~~ 109 (497)
T COG1953 33 PTPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGI---PFPVLS 109 (497)
T ss_pred CCccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCC---CchHHH
Confidence 334567889999998888887766666666666666654 3 48888888877766655555544444433 122344
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccCCCCccccCCCccccccchhhhHHHHH-HHHHH
Q 008094 131 YTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILEL-FPFFKENIPSWIGHGGEEFLGGTLSINILAPI-LLALL 208 (578)
Q Consensus 131 ~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 208 (578)
+..||-..+-.-...-.+.-+......+...+..++.++.. .|.+. .+.... ...+.....++.+. +.++-
T Consensus 110 RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~--~~~~~~-----~~lg~tt~~~i~F~ifW~l~ 182 (497)
T COG1953 110 RASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLL--IPNTLS-----PLLGLTTLELICFFIFWVLQ 182 (497)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccc--cCCccc-----cccCCcHHHHHHHHHHHHHH
Confidence 55577655555444444444444455566666666655543 23211 111000 00111222234443 34444
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC---C-CCCCC---hHHHHHHHHHHHhhc--cchHHHh
Q 008094 209 TIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS---P-FAPNG---FKEILTGATVVFFAY--VGFDAVA 279 (578)
Q Consensus 209 ~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~-~~~~g---~~~~~~~~~~~~~~~--~G~e~~~ 279 (578)
..+-..|.+..+|++.+...+..+..+.+.+....+.+..+.. + -.+.+ ...++.++. .+..+ +..-...
T Consensus 183 ~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~-~~v~~~Atl~lN~~ 261 (497)
T COG1953 183 LLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIA-AWVGFWATLALNIP 261 (497)
T ss_pred HHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHH-HHHHHHHHHhcCCc
Confidence 4555689999999999999888888888877766554432111 1 11111 112222221 11111 1122234
Q ss_pred hhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCC--CChHHHHHHHcChhHHHH-HHHHHHHHHHHHH
Q 008094 280 NSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE--DAPLSDAFASRGLKYVSV-LISFGAVAGLTTT 356 (578)
Q Consensus 280 ~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 356 (578)
..+.+.|+| |+.-++-..++-+...+.-+..+......- ...++ -+ ..|+..+........ +..+..+++..++
T Consensus 262 DFsRfa~s~-~~~~~gq~~gLPv~~~l~~ligvv~tsa~~-~lyG~~~w~-P~di~~~~~~~~~~~fl~~l~~~iati~~ 338 (497)
T COG1953 262 DFTRFAKSQ-KAQIWGQLVGLPVNFALFSLIGVVVTSASY-ILYGETIWD-PLDIVARFLSGFYAAFLAGLTFAVATIST 338 (497)
T ss_pred hhhcccCCh-hhhhhccchhhhHHHHHHHHHHhhHHHHHH-HhhCcccCC-HHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 556666665 344445444444444444444433332211 01111 12 345555555444443 5555555555555
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhh---cCH-HHHHHHHHHHHHH--HHHHHH
Q 008094 357 LLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL---FNV-RVLSHILSVGTLT--GYSVVS 430 (578)
Q Consensus 357 ~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~---~~~-~~l~~~~~~~~l~--~y~~~~ 430 (578)
..+.-..++- +.++ +.+||.... | ++-+++.+++.++.-. -+- .....+.+.+.++ ...+++
T Consensus 339 Ni~aN~vsp~--~D~s--~l~Pk~in~---k-----rg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmi 406 (497)
T COG1953 339 NIAANIVSPG--YDLS--ALFPKYINI---K-----RGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMI 406 (497)
T ss_pred hHHhccCChH--HHHH--Hhcccccch---h-----hhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4432222221 1222 366765542 2 2345666665544322 121 1222222333333 345566
Q ss_pred HHHhhheecCCC
Q 008094 431 ACVIALRWKDRT 442 (578)
Q Consensus 431 ~~~~~~r~~~~~ 442 (578)
.-++..||++-+
T Consensus 407 aDyflirk~~~~ 418 (497)
T COG1953 407 ADYFLVRKGRLN 418 (497)
T ss_pred HHHHhhhcCccC
Confidence 667777776654
No 68
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.33 E-value=0.0029 Score=65.40 Aligned_cols=316 Identities=18% Similarity=0.154 Sum_probs=167.0
Q ss_pred hhhhhhhhHHHHHHHHHhhhCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHHHHHHHH
Q 008094 71 VGASVGAGIFVVTGTVARDAGPG---VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLM 147 (578)
Q Consensus 71 i~~~ig~g~~~~~~~~~~~~G~~---~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~~g~~~~ 147 (578)
++.-.|+|=...|...=+.+|.. +.++++++++..=..+. ++...- .|+.+...+| .||..|.+......
T Consensus 13 FamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgv----ia~~~~--~~~~~~l~~~-v~~~f~~if~~~i~ 85 (427)
T PF05525_consen 13 FAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGV----IAVAKS--GGGIEDLASR-VGPKFALIFTILIY 85 (427)
T ss_pred HHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHH----HHHhhc--CCCHHHHhcc-cCcHHHHHHHHHHH
Confidence 44446677666777766778863 66677777766433222 111221 2455555554 67777766554333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 008094 148 LDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMT 227 (578)
Q Consensus 148 l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 227 (578)
+.--... +.....+....... .|.+.. + +.....+..+++..+...+.++.-|...++-++++
T Consensus 86 l~IGP~~-aiPRtaa~sfe~~i--~p~~~~--~------------~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LT 148 (427)
T PF05525_consen 86 LSIGPLF-AIPRTAAVSFEMGI--APFFPE--N------------SNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLT 148 (427)
T ss_pred HHHHhcc-cCcchhhhhHHHhh--hccCCc--c------------cccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHH
Confidence 2211110 11122222211111 122211 0 11123356667777788888888999999999999
Q ss_pred HHHHHHHHHHHhhhhcccccCCCCCC---CCCCh-HHHHHHH----HHHHhhccchHHHhhhhhhhcCCCCChhHHH---
Q 008094 228 VVKVIIVIVVIFAGAFEVDVSNWSPF---APNGF-KEILTGA----TVVFFAYVGFDAVANSAEESKKPQRDLPIGI--- 296 (578)
Q Consensus 228 ~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~g~-~~~~~~~----~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~--- 296 (578)
-+.++.++++++.++.+...+.-++- .++.+ .++.-+- ..+...|...-..+--....||+ |+..|.+
T Consensus 149 P~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~-k~~~~~~~~a 227 (427)
T PF05525_consen 149 PILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIIINAIRQKGYKDK-KEIKKYTIKA 227 (427)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Confidence 99999999999888876332222111 11111 1121111 12333444433333333334443 3444444
Q ss_pred -HHHHHHHHHHHHHHHHHHhccccc--cccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008094 297 -LGSLLICAALYVGVSLVLTGMVPY--KFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGR 373 (578)
Q Consensus 297 -~~s~~~~~i~y~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 373 (578)
..+...-.++|....+.-....+. ++.+..+.+.++.++..|+.+..++.+.+.++|+.+..+...+++.....
T Consensus 228 g~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~--- 304 (427)
T PF05525_consen 228 GLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSE--- 304 (427)
T ss_pred HHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 444444445555544433332221 11222335666777778888899999999999999999998888876544
Q ss_pred cCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 008094 374 DGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGY 426 (578)
Q Consensus 374 d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y 426 (578)
..| +.+++.......+.........++.+..+..=...+.|
T Consensus 305 ----------~~~--kisY~~~v~i~~i~S~~ian~Gl~~Ii~~s~PiL~~iY 345 (427)
T PF05525_consen 305 ----------LFP--KISYKVWVIIFTIFSFIIANLGLDQIIKISVPILMFIY 345 (427)
T ss_pred ----------Hhc--ccChHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHh
Confidence 332 34444333333332333344566777666654444444
No 69
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.18 E-value=0.016 Score=62.04 Aligned_cols=283 Identities=14% Similarity=0.080 Sum_probs=137.3
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHH-HHHHhhhCcH-HHHHH---HHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHH
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVT-GTVARDAGPG-VTISF---LLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~-~~~~~~~G~~-~~~~~---ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~ 132 (578)
.|+++++....-.+++.+|++-+... +..++ .|-. ..+.+ ..+.++....+.-+.++.++.. .-..++|.++
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~T~~e~l~~ 115 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYN-YGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYN--AITINDVLKA 115 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CccHHHHHHH
Confidence 47899998877777777776666543 33443 3432 11111 1111111222333445555543 3578889999
Q ss_pred Hhchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHH
Q 008094 133 AFNEL-TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIV 211 (578)
Q Consensus 133 ~~g~~-~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (578)
-+|+. ....++....+...........+.+..++.+++. +.+. . +.+...+.....
T Consensus 116 Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi--------~~~~------------~---iii~~~iv~iYt 172 (471)
T TIGR02119 116 RYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL--------SYLT------------A---LFIFSSSVLIYT 172 (471)
T ss_pred HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CHHH------------H---HHHHHHHHHHHH
Confidence 89954 4555555444444444444455555555555431 1111 0 111122233334
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc-------------ccCCCCCCCCCChH--HHHHHH-HHHHhhccch
Q 008094 212 LCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-------------DVSNWSPFAPNGFK--EILTGA-TVVFFAYVGF 275 (578)
Q Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------------~~~~~~~~~~~g~~--~~~~~~-~~~~~~~~G~ 275 (578)
..-|.|...+.+.+-..+.++..+++.+...... +.+.++++.+++.. .+.... ....+...+.
T Consensus 173 ~~GG~~av~~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 252 (471)
T TIGR02119 173 TFGGFRAVALTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGL 252 (471)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCc
Confidence 4456666555544444443333322222211110 11111222222211 111111 1112222333
Q ss_pred HHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhcc--ccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHH
Q 008094 276 DAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGM--VPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGL 353 (578)
Q Consensus 276 e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (578)
....+-.-..||+ |+..|+...+.+....++....+.-... ..++..+.|..+.....+..+++...++..+++.+.
T Consensus 253 p~~~~R~~aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~ 331 (471)
T TIGR02119 253 PQTAVRCMSYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAI 331 (471)
T ss_pred hHHHHHHHhcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHHHH
Confidence 3334445556775 6788888888766665554443332111 112211234556666666677788777777778888
Q ss_pred HHHHHHHHHHHHHH
Q 008094 354 TTTLLVGLYVQSRL 367 (578)
Q Consensus 354 ~~~~~~~~~~~sR~ 367 (578)
+++..+.+.+.+=.
T Consensus 332 mST~~s~l~~~ss~ 345 (471)
T TIGR02119 332 MSTVNSLLLQSSST 345 (471)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777666544
No 70
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.16 E-value=0.0082 Score=62.99 Aligned_cols=283 Identities=13% Similarity=0.014 Sum_probs=140.8
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhch-
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE- 136 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~- 136 (578)
.|+++++....-.+++.++++-+..........|-..++..+...+.....+..+.+.-++.+ .=..++|.++-+|+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~T~~e~l~~Ryg~~ 79 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNG--AYTMPEYLEKRFGKR 79 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCchhHHHHHHhCch
Confidence 378888888776667777766555544433334432222222223334455666666665544 35788899998997
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhh
Q 008094 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (578)
Q Consensus 137 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 216 (578)
....+.+....+......+....+.+..+..+.+. | .+. .+.+...++......-|.
T Consensus 80 ~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi-~-------~~~---------------~~ii~~~i~~~Yt~~GG~ 136 (407)
T TIGR00813 80 ILRGLSVLSLILYIFLYMSVDLFSGALLIELITGL-D-------LYL---------------SLLLLGAITILYTVFGGL 136 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-h-------HHH---------------HHHHHHHHHHHHHHHcch
Confidence 56666677766666667777777777777766542 1 111 011222222333444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccc-------------cc------CCCCC-CCCCC-hHHHHH---HHHHH-Hhh
Q 008094 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEV-------------DV------SNWSP-FAPNG-FKEILT---GATVV-FFA 271 (578)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------------~~------~~~~~-~~~~g-~~~~~~---~~~~~-~~~ 271 (578)
|.......+=.++.++..+++.+....+. ++ +.++. ..+.. ...+.. +.... .+.
T Consensus 137 ~av~~Td~iQ~~i~~~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 216 (407)
T TIGR00813 137 KAVVWTDTIQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWY 216 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHH
Confidence 55554443333333322222221111110 00 00110 00000 001100 11111 111
Q ss_pred ccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhc---ccc----ccc----cCCCChHHHHHHHcChhH
Q 008094 272 YVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTG---MVP----YKF----LDEDAPLSDAFASRGLKY 340 (578)
Q Consensus 272 ~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~---~~~----~~~----~~~~~p~~~~~~~~~~~~ 340 (578)
+.. ....+-.=-.||+ |+..|++..+.....+++.+..+.-.. ..+ ..+ .+.+..+.....+..+++
T Consensus 217 ~~~-~~~~qR~~a~ks~-~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~ 294 (407)
T TIGR00813 217 WTN-QVIVQRCLAAKSA-KHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPG 294 (407)
T ss_pred hcC-HHHhhHHHhcCCH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcc
Confidence 100 0112222234554 678888888876665555433332221 122 111 133445666677777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 341 VSVLISFGAVAGLTTTLLVGLYVQSRL 367 (578)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~sR~ 367 (578)
+..++.++.+.+.+++..+.+.+.+-.
T Consensus 295 l~gl~~agilaA~mST~~s~l~a~ss~ 321 (407)
T TIGR00813 295 LAGLFLAAILAAVMSTLSSQLNSASTV 321 (407)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 888888888888888887777666654
No 71
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.10 E-value=0.0091 Score=61.16 Aligned_cols=245 Identities=14% Similarity=0.118 Sum_probs=124.1
Q ss_pred hHHHHHHhhhhhhhhHHHHHHHHH-hhhCcHHHHHHHHHHHH-HHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHH
Q 008094 64 FELVLIGVGASVGAGIFVVTGTVA-RDAGPGVTISFLLAGAA-SVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFL 141 (578)
Q Consensus 64 ~~~~~~~i~~~ig~g~~~~~~~~~-~~~G~~~~~~~ii~~l~-~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~ 141 (578)
.....-++|+.+|.|=....+... +++|.+.++-+++..++ .++ ...+|++-=--.+.+..-.|-+. .++.....
T Consensus 12 lGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiP--lli~Ef~iGr~~~~~~~~a~~~l-~~~~~~~~ 88 (439)
T COG0733 12 LGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIP--LLLAEFAIGRRGRKNAVGAFRKL-APKKKWEW 88 (439)
T ss_pred HHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHH--HHHHHHHhhhhcCCChhHHHHHh-ccCccchh
Confidence 344455677888887777766644 55666666655555444 333 23455442211101222222222 21222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHH-H
Q 008094 142 VFAQLMLDYHIGAASIARSLASYVVSILELFP-FFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGE-S 219 (578)
Q Consensus 142 ~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~ 219 (578)
.||.-.+........++...+-.+.++..... .+. .+.+.......+...+.......-.+++.+...+..+|++. .
T Consensus 89 ~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~~GI 167 (439)
T COG0733 89 IGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALP-DTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVKKGI 167 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHHhhH
Confidence 44443333333333444444433333332211 111 00000000001111122223334456666677777889876 7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccc---------cCCCCCCCCCChHHHHHHHHHHHhhcc-chHHHhhhhhhhcCCC
Q 008094 220 SVLNSCMTVVKVIIVIVVIFAGAFEVD---------VSNWSPFAPNGFKEILTGATVVFFAYV-GFDAVANSAEESKKPQ 289 (578)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~~g~~~~~~~~~~~~~~~~-G~e~~~~~~~E~k~P~ 289 (578)
.|.++++....++.++++.+-.....+ ..+|+.+.+ ...+..++-.++|+.. |+-....++.-.++ +
T Consensus 168 Ek~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~--~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~ 244 (439)
T COG0733 168 EKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTD--PKVWLAALGQAFFSLSLGFGIMITYSSYLSK-K 244 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCc--hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc-c
Confidence 888888877776666665554332211 011222211 3356667777888774 88888888888876 6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHh
Q 008094 290 RDLPIGILGSLLICAALYVGVSLVLT 315 (578)
Q Consensus 290 k~ip~a~~~s~~~~~i~y~~~~~~~~ 315 (578)
.|+++...........+-++..+.+.
T Consensus 245 ~~l~~sa~~v~~~n~~~s~lAGl~If 270 (439)
T COG0733 245 SDLVSSALSIVLLNTLISLLAGLVIF 270 (439)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 78999877777666666555555443
No 72
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=97.85 E-value=0.035 Score=57.59 Aligned_cols=273 Identities=14% Similarity=0.058 Sum_probs=141.6
Q ss_pred hhhhhhhhHHHHHHHHHhhhCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHHHHHHHH
Q 008094 71 VGASVGAGIFVVTGTVARDAGPG---VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLM 147 (578)
Q Consensus 71 i~~~ig~g~~~~~~~~~~~~G~~---~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~~g~~~~ 147 (578)
++.-.|+|=...|+..=.++|.. +.++++++++..=..+. ++-.. . .|+.....+| .||..|.+......
T Consensus 18 FamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgi----iava~-~-~g~~~~l~~r-v~~~f~~~f~~~i~ 90 (439)
T PRK15433 18 FALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTV----VALAK-V-GGGVDSLSTP-IGKVAGVLLATVCY 90 (439)
T ss_pred HHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHH----HHHhh-c-CCCHHHHhhh-cchHHHHHHHHHHH
Confidence 34446777777777666678863 66677777766332222 11122 2 2566666665 67776665433222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCcccccc-chhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 008094 148 LDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGG-TLSINILAPILLALLTIVLCWGVGESSVLNSCM 226 (578)
Q Consensus 148 l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 226 (578)
+.--... +.....+.... ....+ +.++ .....+..+++..+..++..+.-|...++-+++
T Consensus 91 l~IGP~~-aiPRtaavsfE----------m~i~p--------~~~~~~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~L 151 (439)
T PRK15433 91 LAVGPLF-ATPRTATVSFE----------VGIAP--------LTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFL 151 (439)
T ss_pred HHHhhcc-ccCCccccchh----------heeec--------cCCcccHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHH
Confidence 1110000 00011110000 00111 1111 122335666777777788888889999999999
Q ss_pred HHHHHHHHHHHHhhhhcccccCCCCCCCCCChHHHHHHHH--------HHHhhccchHHHhhhhhhhcCCCCChhH----
Q 008094 227 TVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGAT--------VVFFAYVGFDAVANSAEESKKPQRDLPI---- 294 (578)
Q Consensus 227 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~~~G~e~~~~~~~E~k~P~k~ip~---- 294 (578)
+-+.++.++++++.++.+...+.-.+..+..-..+..++. .+...|...-..+--....||+ |.+-|
T Consensus 152 TP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i~~~G~~~~-~~~~k~t~~ 230 (439)
T PRK15433 152 APLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEA-RLLTRYTVW 230 (439)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHH
Confidence 9999999988888887763211111100000011222221 2333333333333333345554 33444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-cccc-CCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 295 GILGSLLICAALYVGVSLVLTGMVP-YKFL-DEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (578)
Q Consensus 295 a~~~s~~~~~i~y~~~~~~~~~~~~-~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 370 (578)
+-..+.+.-.++|....+.-....+ .++. +..+-......+..++++..++.+.+.++|+++..+...++++....
T Consensus 231 ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~ 308 (439)
T PRK15433 231 AGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQ 308 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444455556555554333222 1111 11222344556667788889999999999999999999888876443
No 73
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=97.85 E-value=0.0066 Score=62.89 Aligned_cols=250 Identities=14% Similarity=0.137 Sum_probs=131.2
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhch
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~ 136 (578)
+++-+.+..+.--..++.|+|++..|. +.+..|- ..++.....+.+.....+.+.+.+...++ . ..-.-..+.+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~-afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~-~-ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPY-AFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGE-R-TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHH-HHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC-C-CHHHHHHHHcCC
Confidence 455677788777788999999998876 5566775 46667777788888888889999999988 3 333334444555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhh
Q 008094 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (578)
Q Consensus 137 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 216 (578)
...+......- .+..+..++..-..+.+..+... . +.+ .|... + +.+......+....++.-+.+ .+..
T Consensus 80 ~g~~~~~v~~~-~~~~g~i~yliiigd~~p~~~~~-~-~~~---~~~~~--~-~~~~~~~ill~~~~~i~pLsl--~k~l 148 (411)
T KOG1305|consen 80 LGKVDAAVAVK-CFGVGMVSYLIIIGDLLPGFIRS-L-FLD---EEGGS--H-YLDRNFLILLVLLFIILPLSL--LKNL 148 (411)
T ss_pred CceeeehhhHH-hhhccceEEEEEEccccchhhhh-c-ccc---ccccc--c-cccceeEeehHHHHHHHHHHH--HHhh
Confidence 43211111000 00000000000000111111100 0 000 00000 0 001110011112112222222 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccc--CCCCCCCCCCh--HHHHHHHHHHHhhccchHHHhhhhhhhcCCC-CC
Q 008094 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEVDV--SNWSPFAPNGF--KEILTGATVVFFAYVGFDAVANSAEESKKPQ-RD 291 (578)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~g~--~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~-k~ 291 (578)
...+. ....++...+..++..+.-....+. ....+..+++. .++..++....++|...+....+-.|+|||. |+
T Consensus 149 ~~Lk~-tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~ 227 (411)
T KOG1305|consen 149 DSLKY-TSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKK 227 (411)
T ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHH
Confidence 22222 2223333222222222222222111 11112223332 4788899999999999999999999999996 67
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 008094 292 LPIGILGSLLICAALYVGVSLVLTGMVPYKF 322 (578)
Q Consensus 292 ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~ 322 (578)
+-+....+...+.++|.......+...+++.
T Consensus 228 i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v 258 (411)
T KOG1305|consen 228 IQRVSNIAIILATLIYLLTGLFGYLTFGDLV 258 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhheecccc
Confidence 8888899999999999999988887777653
No 74
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.84 E-value=0.0026 Score=66.77 Aligned_cols=288 Identities=16% Similarity=0.136 Sum_probs=125.0
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHH-HHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhch
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~-~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~ 136 (578)
.|+++++....-.+++.+|++-+.. ++..+. .|....+..+...+...+..+.++.--++.. .=..++|.++-+|+
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~T~~e~~~~Ryg~ 81 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYS-YGISGLWYAIGYAIGFLLFALFFAPRLRRSG--AVTIPEYLEKRYGS 81 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHH-T-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT----SHHHHHHHHT-H
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeccccchhHHHHHHHHHHhhcccc--hhhhhhhhhhhcCC
Confidence 3778888777666667777665655 444444 4543233323333333444444454444333 35788999999998
Q ss_pred hh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHh
Q 008094 137 LT--AFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (578)
Q Consensus 137 ~~--g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (578)
.. ..+.+....+......+....+.+..++.+.+. | .+ . .+.+...++......-
T Consensus 82 ~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi-~-------~~--------------~-~~~i~~~i~~iYt~~G 138 (406)
T PF00474_consen 82 KALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI-P-------YN--------------T-AILIVGVIVIIYTFFG 138 (406)
T ss_dssp HH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------HH--------------H-HHHHHHHHHHHTTCTT
T ss_pred chhhhhhcccccchhhhhhhhccccccccchhhccch-h-------hh--------------H-HHHHHHHHHHHhhhhh
Confidence 77 555555555555555666666666666665432 1 00 0 0111111222222233
Q ss_pred hhHHHH---HHHHHHHHHHHHHHHHHHhh--h-hc-------ccccCCCCCCCCCChHH---HHHHHHHHHhhccchHHH
Q 008094 215 GVGESS---VLNSCMTVVKVIIVIVVIFA--G-AF-------EVDVSNWSPFAPNGFKE---ILTGATVVFFAYVGFDAV 278 (578)
Q Consensus 215 g~~~~~---~~~~~~~~~~~~~~~~~~i~--~-~~-------~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~G~e~~ 278 (578)
|.|... .+|.++..+..+.+.+.... + .. ..++...+.+.|.+... .............|....
T Consensus 139 Gl~av~~td~iQ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 218 (406)
T PF00474_consen 139 GLRAVAWTDFIQGVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIALMLGTFGA 218 (406)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHHHHSTHHH
T ss_pred hHhhhhHHHHHHHHHHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHHHhhhccc
Confidence 555444 45544433333333222221 1 10 01111011122332210 010100100111233322
Q ss_pred hhhhhh---hcCCCCChhHHHHHHHHHHHHHHHHHH------HHHhccccc----cccCCCChHHHHHHHcChhHHHHHH
Q 008094 279 ANSAEE---SKKPQRDLPIGILGSLLICAALYVGVS------LVLTGMVPY----KFLDEDAPLSDAFASRGLKYVSVLI 345 (578)
Q Consensus 279 ~~~~~E---~k~P~k~ip~a~~~s~~~~~i~y~~~~------~~~~~~~~~----~~~~~~~p~~~~~~~~~~~~~~~~~ 345 (578)
.++... .||+ |+..|++..+.....+++.... .......|. +.-+.+..+.....+..+++...++
T Consensus 219 p~~~qR~~aak~~-~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~ 297 (406)
T PF00474_consen 219 PHFWQRFLAAKSP-KTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLF 297 (406)
T ss_dssp -HHHHHHHSSSHH-HHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHH
T ss_pred hHHHHHHHhcCCH-HHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHH
Confidence 333322 3544 5777887766544444433311 111112221 1112334566677777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008094 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDG 375 (578)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~ 375 (578)
..+.+.+.+++..+.+.+.+-. ++||=
T Consensus 298 ~~~~~aA~~ST~~s~l~a~ss~---~~~Di 324 (406)
T PF00474_consen 298 LAGILAAIMSTADSLLLAISSI---FSRDI 324 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHC
T ss_pred HHHHHHhhhHHHHHHHhhhhhh---hhHHh
Confidence 7788888888888877776654 45553
No 75
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.83 E-value=0.072 Score=57.27 Aligned_cols=42 Identities=12% Similarity=0.050 Sum_probs=30.3
Q ss_pred CChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 326 DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 367 (578)
Q Consensus 326 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 367 (578)
|..+.....+..++++..++..+++.+.+++..+.+.+.+=.
T Consensus 304 d~~~~~~~~~~~p~~l~gl~~a~ilaA~mST~~s~l~s~ss~ 345 (487)
T TIGR02121 304 ETIFIVLSQILFHPWIAGILLAAILAAIMSTISSQLLVSSSA 345 (487)
T ss_pred chhHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666667778777777788888888888877777654
No 76
>PRK12488 acetate permease; Provisional
Probab=97.77 E-value=0.096 Score=57.10 Aligned_cols=108 Identities=9% Similarity=-0.097 Sum_probs=62.4
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHH-HHHHhhhCcHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCccchhhhhHHHhc
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVT-GTVARDAGPGVTISFLLAGAASVL-NALCYAELASRFPAVVGGAYLYAYTAFN 135 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~-~~~~~~~G~~~~~~~ii~~l~~~~-~a~~~ael~~~~P~~~GG~y~~~~~~~g 135 (578)
.|+++++...+...++.+++.-|... +..+. .|...++ +.++..+..+ ..+.+++--.+... =..++|.++-||
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~-~G~~~~~-~~~g~~~g~~~~~~~~a~~lr~~g~--~T~~d~l~~Rf~ 141 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFM-NGYDGLL-YALGVLAGWPIILFLIAERLRNLGK--YTFADVVSYRLA 141 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhHHH-HHHHHHHHHHHHHHHHHHHHHHCCC--cchHHHHHHHcC
Confidence 48899999877777777777666554 44444 4543222 2222222222 23445554444433 356777777776
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 136 -ELTAFLVFAQLMLDYHIGAASIARSLASYVVSIL 169 (578)
Q Consensus 136 -~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~ 169 (578)
+....+++....+...........+.+..+..++
T Consensus 142 s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~ 176 (549)
T PRK12488 142 QGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLF 176 (549)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777776666655555566666666666554
No 77
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.77 E-value=0.07 Score=55.42 Aligned_cols=242 Identities=14% Similarity=0.045 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008094 93 GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELF 172 (578)
Q Consensus 93 ~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~ 172 (578)
.++++.+++.++........+..+.+... ......+..||.+-+.+.+....+..+...+..+...++.+..+.+..
T Consensus 30 ~ai~aiilG~~i~~~~~~l~~~~G~~~Gl---~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~ 106 (386)
T TIGR02358 30 RGLLAILLGHLVGVLLLSAAGVIGADTGL---SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRL 106 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCc---CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46666666666554444444444444333 355666677999888888888888887778888888888888776421
Q ss_pred -ccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC-CC
Q 008094 173 -PFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVS-NW 250 (578)
Q Consensus 173 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 250 (578)
|. . +. .+...++.++.......|.|...+++++...+..+..+...+....+.+.. .+
T Consensus 107 ~~~---~-~~----------------~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 166 (386)
T TIGR02358 107 FGE---E-SP----------------MLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELW 166 (386)
T ss_pred cCC---C-ch----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhc
Confidence 21 0 00 012223333455666789999999999988877766665554333332211 11
Q ss_pred CCCCCCChHHHHHHHHHHHhh-ccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChH
Q 008094 251 SPFAPNGFKEILTGATVVFFA-YVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPL 329 (578)
Q Consensus 251 ~~~~~~g~~~~~~~~~~~~~~-~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~ 329 (578)
++ +.. .++..+.....-. ..+....+.++...|+|| +.-++...+..+...+..+.........++ ++|.
T Consensus 167 ~~--~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~-~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~-----~d~~ 237 (386)
T TIGR02358 167 NR--AGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPR-HVFLGTVLGYFIGSCWMYFLGLAVTLATGQ-----TDII 237 (386)
T ss_pred CC--CCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCc-ceehHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCHH
Confidence 11 111 2333333222211 122233677777788764 455666666666655555555444433332 2333
Q ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 330 SDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (578)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 370 (578)
+.+...+... ...+..+++..++.....++.+=-+.+
T Consensus 238 -~~~~~~g~~~---~~~~~~~l~~~~~n~~N~ys~~l~l~~ 274 (386)
T TIGR02358 238 -SILAGAGLGI---PALLIILLSTVTTTFMDIYSAAISTGN 274 (386)
T ss_pred -HHHHhccHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4444443321 223344555555544455555444444
No 78
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.71 E-value=0.11 Score=56.03 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=30.6
Q ss_pred CChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 326 DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 367 (578)
Q Consensus 326 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 367 (578)
|..+.....+..++++..++..+.+.+.+++..+.+.+.|=.
T Consensus 311 d~~~~~l~~~~lp~~l~gl~~a~ilAA~mST~~s~l~a~ss~ 352 (502)
T PRK15419 311 ERVFIELAQILFNPWIAGILLSAILAAVMSTLSCQLLVCSSA 352 (502)
T ss_pred chHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666667778877888888888888888877777643
No 79
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.68 E-value=0.11 Score=54.83 Aligned_cols=74 Identities=12% Similarity=0.085 Sum_probs=41.4
Q ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc-chhhhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 90 AGPGVTISFLLAGAASVLNALCYAELASRFPAVVG-GAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVS 167 (578)
Q Consensus 90 ~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~G-G~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~ 167 (578)
-|-..+|..+++.++ ...+-|++.+.-...| |.-.-+++-+|+.+++.......++.......+..+.+.-++.
T Consensus 63 ~Gy~LLW~llls~~~----~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~l 137 (439)
T PRK00701 63 FGYTLLWVILLSNLM----AMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKL 137 (439)
T ss_pred HCHHHHHHHHHHHHH----HHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554444 4455566655554334 6777888888988877665554445444444444444444433
No 80
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=97.65 E-value=0.1 Score=53.72 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=38.0
Q ss_pred ChHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008094 327 APLSDAFASRGL-KYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (578)
Q Consensus 327 ~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 372 (578)
+...+.++...+ ++...++.++++.+.+++..+...+.+|.+.+.-
T Consensus 239 ~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 239 AQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred HHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhh
Confidence 456677787777 7999999999999999999998888888776655
No 81
>PRK10484 putative transporter; Provisional
Probab=97.64 E-value=0.15 Score=55.44 Aligned_cols=82 Identities=11% Similarity=-0.071 Sum_probs=48.0
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHHHHH---HHhccccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHH
Q 008094 285 SKKPQRDLPIGILGSLLICAALYVGVSL---VLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGL 361 (578)
Q Consensus 285 ~k~P~k~ip~a~~~s~~~~~i~y~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (578)
.||+ |+..|+...+.....+++....+ ......|++..+.|..+.....+..++++..++..+++.+.+++..+.+
T Consensus 270 ak~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mST~~s~l 348 (523)
T PRK10484 270 AKNL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILSTFNGFL 348 (523)
T ss_pred CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5664 56777777765544443332221 1122223322234555666677777777777777777888888877777
Q ss_pred HHHHHH
Q 008094 362 YVQSRL 367 (578)
Q Consensus 362 ~~~sR~ 367 (578)
.+.|-.
T Consensus 349 ~s~st~ 354 (523)
T PRK10484 349 NSASTL 354 (523)
T ss_pred HHHHHH
Confidence 766654
No 82
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.62 E-value=0.16 Score=55.39 Aligned_cols=108 Identities=12% Similarity=-0.048 Sum_probs=55.2
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHH-HHHHHhhhCcHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCCccchhhhhHHHhc
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGPGVTISFLLAGAASV-LNALCYAELASRFPAVVGGAYLYAYTAFN 135 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~-~~~~~~~~G~~~~~~~ii~~l~~~-~~a~~~ael~~~~P~~~GG~y~~~~~~~g 135 (578)
.|+++++....-..++.+++.-|.. ++..+. .|...++.. ++..+.. ...+.++|--++.-. =...+|.++-|+
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~-~G~~~~~~~-~g~~~~~~i~~~~~a~~lrr~g~--~T~~d~l~~Rf~ 141 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYT-SGYDGLIYS-LGFLVGWPIILFLIAERLRNLGR--YTFADVASYRLK 141 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC--ccHHHHHHHHcC
Confidence 4789998765555555566544444 343443 454322211 2222222 333445665444332 345566666665
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 136 -ELTAFLVFAQLMLDYHIGAASIARSLASYVVSIL 169 (578)
Q Consensus 136 -~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~ 169 (578)
|....+.+....+...........+.+..++.++
T Consensus 142 s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~ 176 (549)
T TIGR02711 142 QRPIRILSACGSLVVVALYLIAQMVGAGKLIELLF 176 (549)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666665555544444455555555555554
No 83
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.15 Score=52.84 Aligned_cols=70 Identities=16% Similarity=0.053 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcc-chhhhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 100 LAGAASVLNALCYAELASRFPAVVG-GAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSIL 169 (578)
Q Consensus 100 i~~l~~~~~a~~~ael~~~~P~~~G-G~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~ 169 (578)
...++..+.++..-|++.+.-..+| |.-.-+++-++|.+++.......++.....-.+..+.+-.++.++
T Consensus 52 ~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~ 122 (416)
T COG1914 52 WVILLSNLMAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLF 122 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333444444455555554433222 356666777888888877666666655555555555555555543
No 84
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.48 E-value=0.0039 Score=66.21 Aligned_cols=170 Identities=14% Similarity=0.109 Sum_probs=88.8
Q ss_pred cccccChhHHHHHHhhhhhhhhHHHHHHHHHhhh-Cc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHh
Q 008094 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDA-GP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (578)
Q Consensus 57 l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~-G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~ 134 (578)
-+|+.++++.+.+=++..+....+..-......+ +. .++++.+++.++........+.++.+.-- ......+..|
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl---~~~v~sR~~F 81 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGL---PTMVLSRASF 81 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC------HHHHTTTTS
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCC---Cchhcchhcc
Confidence 4577889999888777665544444433332222 22 46777777766654444444555544433 3555556679
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHH
Q 008094 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELF-PFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (578)
Q Consensus 135 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (578)
|..-+.+.+....+..+...+..+...++.+..+.+.. |. ..+... ..........+..++..++......
T Consensus 82 G~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~-----~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~ 153 (440)
T PF02133_consen 82 GYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGS-----FLWIGN---AIIGIALPLWVCFFIFWLIQTLFAI 153 (440)
T ss_dssp -TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------HH--------------HHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCc-----chhhhh---hhhcchhhHHHHHHHHHHHHHHHHh
Confidence 98888888777777777777777788888888776532 10 000000 0000000111222333344555567
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 008094 214 WGVGESSVLNSCMTVVKVIIVIVV 237 (578)
Q Consensus 214 ~g~~~~~~~~~~~~~~~~~~~~~~ 237 (578)
.|.+...+++.+...+..+..+.+
T Consensus 154 ~g~~~l~~~~~~~~~~~~~~~~~~ 177 (440)
T PF02133_consen 154 YGMKALRRLAVIAAPILLVVFIGM 177 (440)
T ss_dssp THHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cCHHHHHhHHhhhhHHHHhhhhhe
Confidence 888888888877766554443333
No 85
>PLN00151 potassium transporter; Provisional
Probab=97.42 E-value=0.031 Score=61.39 Aligned_cols=219 Identities=12% Similarity=0.045 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhh---cccccCCCCCCCC---------CChHHHHHHH
Q 008094 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGA---FEVDVSNWSPFAP---------NGFKEILTGA 265 (578)
Q Consensus 198 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~---------~g~~~~~~~~ 265 (578)
..+++++++.++.+.-+|....++. +.-+.++=++.+...|+ .+.+++-+..++| ++..+| ..+
T Consensus 275 V~Is~~ILv~LF~~Q~~GT~kVg~~---FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~~~~~~gw-~~L 350 (852)
T PLN00151 275 VMISVAFLVILFSVQRFGTSKVGFA---FGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFFKRNSTKAW-SAL 350 (852)
T ss_pred hhHHHHHHHHHHHHHhccchhhhhh---hccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHHHhCCCceE-EEe
Confidence 4577888888888898998777764 44444444444444443 3333333333333 121111 123
Q ss_pred HHHHhhccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHHHHHH
Q 008094 266 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLI 345 (578)
Q Consensus 266 ~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 345 (578)
--++.+.+|.|+.-. +--.-.+|.+-.|-..-+.=+.++--+..-+....-|.+ ..+|+. .....++.+-+
T Consensus 351 GgVvLciTGaEALfA--DLGHFg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p~~---~~npFy----~svP~~~~wP~ 421 (852)
T PLN00151 351 GGCVLCATGSEAMFA--DLGYFSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNPDS---AEQIFF----SSVPSSLFWPV 421 (852)
T ss_pred cceeeeeccchhhhc--ccCCCCccceeeeehhhHHHHHHHHHcchHHHHhcCccc---ccCcHH----HhCCchhHHHH
Confidence 345678889986532 222333556655543333222222212222222222211 234443 33334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhhhhcCC--CC--cchhHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 008094 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPK--RH--TPVHSQVWVGIVAGILAGLFNVRVLSHILSV 420 (578)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~r--~~--~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~ 420 (578)
.+.+.++..-+..+.+.++=-++.+.-+=|.+|+ +.-|++++ .| .|..-.+++.....+...+-+.+.+.+...+
T Consensus 422 ~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AYGi 501 (852)
T PLN00151 422 FLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDIGNAYGI 501 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHHHHHhhh
Confidence 4333333333333444444455555566689994 23333433 23 3433322322222223334467788887777
Q ss_pred HHHHHHHHH
Q 008094 421 GTLTGYSVV 429 (578)
Q Consensus 421 ~~l~~y~~~ 429 (578)
+.....++.
T Consensus 502 AV~~vM~iT 510 (852)
T PLN00151 502 AEVGVMMVS 510 (852)
T ss_pred hhhhhhhHH
Confidence 765544443
No 86
>PRK09395 actP acetate permease; Provisional
Probab=97.35 E-value=0.35 Score=52.87 Aligned_cols=109 Identities=10% Similarity=-0.070 Sum_probs=57.3
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCccchhhhhHHHhc-
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAAS-VLNALCYAELASRFPAVVGGAYLYAYTAFN- 135 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~-~~~a~~~ael~~~~P~~~GG~y~~~~~~~g- 135 (578)
.|+++++...+-..++.+++.-|...+......|...++. .++..+. ....+.+++--++... =..++|.++-||
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~-~~~~~~g~~~~~~~~~~~~r~~g~--~T~~d~l~~Rygs 144 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIY-SIGFLVGWPIILFLIAERLRNLGK--YTFADVASYRLKQ 144 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHH-HHHHHHHHHHHHHHHHHHHhhCCC--ccHHHHHHHHcCC
Confidence 4789998876666666677655555443333345432222 2222222 2223333333332221 245666667777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSIL 169 (578)
Q Consensus 136 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~ 169 (578)
+....+.+....+...........+.+..+..+.
T Consensus 145 ~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~ 178 (551)
T PRK09395 145 GPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLF 178 (551)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5577777776666555555555555555555553
No 87
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=97.35 E-value=0.19 Score=53.31 Aligned_cols=222 Identities=12% Similarity=0.077 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc--ccCCCCCCCC---------CChHHHHHHHHH
Q 008094 199 ILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV--DVSNWSPFAP---------NGFKEILTGATV 267 (578)
Q Consensus 199 ~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~---------~g~~~~~~~~~~ 267 (578)
.+++++++.++.++-+|.+..++. +..+.++=.+.+...|+.+. +++-+..++| ++..++. .+..
T Consensus 134 ~it~~ILv~LF~iQ~~GT~~ig~~---FgPim~~WF~~l~~~G~~~I~~~p~Vl~A~nP~yai~f~~~~~~~~~~-~LG~ 209 (534)
T PF02705_consen 134 PITIAILVGLFAIQRFGTAKIGKL---FGPIMLLWFLTLGVLGLYNIIQHPEVLKALNPYYAIRFFIRNGWIGFF-VLGA 209 (534)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHH---HhHHHHHHHHHHHHHHHHHHhhCHHHHHHhCHHHHHHHHHHcCCchhh-hcch
Confidence 477788888888999998877775 45444444444444444321 1211111222 2332222 3345
Q ss_pred HHhhccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHHHHHHHH
Q 008094 268 VFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISF 347 (578)
Q Consensus 268 ~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 347 (578)
.+.+.+|.|+.-. +-=+-.||.+.++-..-+.-+.++--+.+-+.....|++ .++|+... ...++.+-+.+
T Consensus 210 V~L~~TGaEALyA--DmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p~~---~~npFf~~----~P~~~~~p~~i 280 (534)
T PF02705_consen 210 VFLCVTGAEALYA--DMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHPEA---VSNPFFLL----IPEWLLWPMVI 280 (534)
T ss_pred HHHHHhhHHHHHh--hhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCcch---hhhHHHHH----hHHHHHHHHHH
Confidence 6778889997643 222233566655544423322222222222222222321 14455433 33455554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhhhhcCC--CC--cchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 008094 348 GAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPK--RH--TPVHSQVWVGIVAGILAGLFNVRVLSHILSVGT 422 (578)
Q Consensus 348 ~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~r--~~--~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~ 422 (578)
.+.++..-+..+.+.++=-+..+.-+-|.+|+ ...|++++ .| .|..-.++......+...+-+.+.+.+...++.
T Consensus 281 lAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYGiAV 360 (534)
T PF02705_consen 281 LATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYGIAV 360 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHHHHH
Confidence 44444444444555555566667777899994 23344433 23 344433333333233334457788888888887
Q ss_pred HHHHHHHHHHH
Q 008094 423 LTGYSVVSACV 433 (578)
Q Consensus 423 l~~y~~~~~~~ 433 (578)
.....+..+..
T Consensus 361 t~tM~iTT~L~ 371 (534)
T PF02705_consen 361 TGTMLITTILL 371 (534)
T ss_pred HHHHHHHHHHH
Confidence 77666555443
No 88
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=97.32 E-value=0.24 Score=50.30 Aligned_cols=278 Identities=17% Similarity=0.130 Sum_probs=137.8
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHhhhCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHH
Q 008094 65 ELVLIGVGASVGAGIFVVTGTVARDAGPG---VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFL 141 (578)
Q Consensus 65 ~~~~~~i~~~ig~g~~~~~~~~~~~~G~~---~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~ 141 (578)
..-+|.++.-.|+|=...|+..=..+|.. +.++++++++..=.... ++ .-. +||.|.=..+-.||..|.+
T Consensus 9 ~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgi----Ia--~a~-~g~~~~~l~~~i~~~fg~~ 81 (431)
T COG1114 9 ALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGI----IA--VAL-YGGGVESLATRIGPWFGVL 81 (431)
T ss_pred HHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHH----HH--hhc-cCCCHHHHhhhccchHHHH
Confidence 33344455556666666666655667763 66777777776322221 11 122 4443333344477777765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHHH
Q 008094 142 VFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSV 221 (578)
Q Consensus 142 ~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 221 (578)
..-...++--... +.....+...... ..|...++ +.....+..+++..+...+.+..-|...|
T Consensus 82 f~~~iyLsIGPff-AiPRt~~vsfe~~--i~p~~~~~--------------~~~~l~ifs~ifF~ia~~~sl~psklid~ 144 (431)
T COG1114 82 FAIAIYLSIGPFF-AIPRTGAVSFEVG--ISPLLGDS--------------SLPSLFIFSVIFFAIAYLFSLNPSKLIDR 144 (431)
T ss_pred HHHHHHHHhcccc-cCCcccchhHHHh--hhcccCCC--------------cchHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 4433222210000 0001111110000 01211111 12233456667777777888889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccCCCCC---CCC----CChH-HHHHHHHHHHhhccchHHHhhhhhhhcCCCCChh
Q 008094 222 LNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP---FAP----NGFK-EILTGATVVFFAYVGFDAVANSAEESKKPQRDLP 293 (578)
Q Consensus 222 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~----~g~~-~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip 293 (578)
+-++++-+.++.++++.+..+...+...-++ ..+ .|+. +....=..+..+|...-..+--..-.+++| +..
T Consensus 145 vGk~LTPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~TMDaLAal~FgivIv~alk~~g~~~~~-~~~ 223 (431)
T COG1114 145 VGKFLTPILLVLLLILVIAAIIPPAGPISAASGAYQSQPFSKGFLEGYLTMDALAALAFGIVIVNALKSKGVTTKK-QII 223 (431)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhccCcHH-HHH
Confidence 9999999999998888887665533221110 111 1111 111111234445554444443344444443 444
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHhccccccccC---C-CChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 294 IGILGSLLICAALYVGVSL--VLTGMVPYKFLD---E-DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 367 (578)
Q Consensus 294 ~a~~~s~~~~~i~y~~~~~--~~~~~~~~~~~~---~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 367 (578)
|-.+.+-++..+.-.+... ...+....+... + ..-+.+..++..|+....++.+.+.++|+.+..+...+++..
T Consensus 224 ~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aef 303 (431)
T COG1114 224 KYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEF 303 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333333322222222 222222222111 1 122334555567777888888888999999988888777753
No 89
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.29 E-value=0.37 Score=51.80 Aligned_cols=284 Identities=14% Similarity=0.060 Sum_probs=144.5
Q ss_pred ccccChhHHHHHHhhhh-hh-hhHHHHHHHHHhhhCcHHHHHHH---HHHHHHHHHHHHHHHHhhcCCCCccchhhhhHH
Q 008094 58 LRRLGLFELVLIGVGAS-VG-AGIFVVTGTVARDAGPGVTISFL---LAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~-ig-~g~~~~~~~~~~~~G~~~~~~~i---i~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~ 132 (578)
.|+++++ +.+++.+.. .+ ...+..++.++..|-...++... ...+.....+--..+++ +.++ .=..++|.++
T Consensus 37 gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~-~~T~~d~l~~ 113 (493)
T COG0591 37 GRSLGPF-VYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARG-ATTIPDFLEA 113 (493)
T ss_pred CCcCChH-HHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccC-CccHHHHHHH
Confidence 5889998 666666643 44 34444555555543333333222 33333455555667777 5555 6789999999
Q ss_pred Hhc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHH
Q 008094 133 AFN-ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIV 211 (578)
Q Consensus 133 ~~g-~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (578)
-|| +....+.+....+......+....+.+..+...++ .+ .+ ....+.+.++++....-
T Consensus 114 Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~-------~~------------~~~~~~~~~v~~Yt~~g 173 (493)
T COG0591 114 RFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-IS-------YV------------TGILIGALIVALYTFLG 173 (493)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CC-------HH------------HHHHHHHHHHHHHHHHc
Confidence 999 88888888888888888888888888777755443 11 10 01112233333333333
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhh---hhcc-----cccCC---CCCCCC-CChHHHHH---HHHHHHhhccchH
Q 008094 212 LCWGVGESSVLNSCMTVVKVIIVIVVIFA---GAFE-----VDVSN---WSPFAP-NGFKEILT---GATVVFFAYVGFD 276 (578)
Q Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~-----~~~~~---~~~~~~-~g~~~~~~---~~~~~~~~~~G~e 276 (578)
-.+++..+..+|..+..+.+..+.+.... +... ....+ .+++.. ........ ........+..-.
T Consensus 174 G~~av~~Td~iqg~im~i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (493)
T COG0591 174 GLRAVVWTDFIQGLIMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFDGALSPIYIISLIAWGTLFLGYFGQPH 253 (493)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcccccccCcccccchHHHHHHHHHHHHHHhhhhcCch
Confidence 45566667777766655544444333332 1110 00111 111111 11111111 1111233333444
Q ss_pred HHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHh----cc--ccc----cccCCCChHHHHHHHcChhHHHHHHH
Q 008094 277 AVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLT----GM--VPY----KFLDEDAPLSDAFASRGLKYVSVLIS 346 (578)
Q Consensus 277 ~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~----~~--~~~----~~~~~~~p~~~~~~~~~~~~~~~~~~ 346 (578)
...+.-. .|++| +.||.+......-.+.+++..+++. .. .+. ...+.+..+........+++...++.
T Consensus 254 i~~r~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~g~~~ 331 (493)
T COG0591 254 ILPRFMA-AKSIK-SLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLLNPELVFPYLILALFPPWIAGLLL 331 (493)
T ss_pred hhhhhhh-hccHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCHHHHHHHHHHHHChHHHHHHHH
Confidence 4444444 55543 4454443333333333333322211 11 111 11233445666777777888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008094 347 FGAVAGLTTTLLVGLYVQSR 366 (578)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~sR 366 (578)
.+++.+.+++..+.+...+-
T Consensus 332 ~ailaAvmSt~ss~ll~~ss 351 (493)
T COG0591 332 AAILAAVMSTASSQLLVASS 351 (493)
T ss_pred HHHHHHHHHHHHHHHHhhhH
Confidence 77777777776666655553
No 90
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=97.29 E-value=0.34 Score=51.42 Aligned_cols=166 Identities=14% Similarity=0.044 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccc-cccCCC---------C
Q 008094 258 FKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPY-KFLDED---------A 327 (578)
Q Consensus 258 ~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~-~~~~~~---------~ 327 (578)
|.+-...+.-+.|.--+--....+++=.| .|++..-+...++... +....-+.+.+...- .+.+.. +
T Consensus 300 w~~~WTvFYwaWWiawaPfvG~FiArISk--GRTIRE~il~~~~~ps-l~~~~wf~ifGg~al~~~~~g~~~~~~~~~~g 376 (485)
T PF02028_consen 300 WPQDWTVFYWAWWIAWAPFVGLFIARISK--GRTIREFILGVLLVPS-LFCFLWFSIFGGYALYLQLSGAGDLAAANEQG 376 (485)
T ss_dssp HHHHTHHHHHHHHHHTHHHHHHHHHHCTT--TSBHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCTSS-HHHHHHH-
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhhcC--CcCHHHHHHHHHHhhH-HHHHHHHHHHCchHHhhHhhhhhhHHHHhhcc
Confidence 54444344444444334444455555555 4788555544444433 333333333321111 111111 1
Q ss_pred ---hHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCchhhhhhcCCCCcchhHHHHHHHHHH
Q 008094 328 ---PLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDG-LLPSIFAKVHPKRHTPVHSQVWVGIVAG 403 (578)
Q Consensus 328 ---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~-~lP~~~~~~~~r~~~P~~ail~~~~i~~ 403 (578)
.+.+.+++. ++..++.+..++..+....+...+++..+-.++.+| .=|+...|+ .++ +..++++.
T Consensus 377 ~~~a~~~~l~~l---P~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~~~ep~~~~ri-------~W~-~~~~~~a~ 445 (485)
T PF02028_consen 377 PEAALFAFLEQL---PLSKILSILFLILIFIFFVTSADSATYVLAMLSSKGDEEPPRWLRI-------FWG-LIIGALAI 445 (485)
T ss_dssp HHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSS-HHHHH-------HHH-HHHHHHHH
T ss_pred hhhHHHHHHHHh---hHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCCCCCCchHHHH-------HHH-HHHHHHHH
Confidence 222333333 223444555555666666777778888888888775 212111111 122 23333444
Q ss_pred HHHhhcCHHHHHHHH---HHHHHHHHHHHHHHHhhhe
Q 008094 404 ILAGLFNVRVLSHIL---SVGTLTGYSVVSACVIALR 437 (578)
Q Consensus 404 i~~~~~~~~~l~~~~---~~~~l~~y~~~~~~~~~~r 437 (578)
.+....+++.+-++. ++-..+...+.+.+.++.-
T Consensus 446 ~ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~~~~k~l 482 (485)
T PF02028_consen 446 VLLLIGGLDALQSASIIGGLPFSFVMLLMCISFIKAL 482 (485)
T ss_dssp HHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555544444 4444455556666655543
No 91
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.28 E-value=0.42 Score=52.23 Aligned_cols=108 Identities=13% Similarity=0.034 Sum_probs=65.8
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHh
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG---VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~---~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~ 134 (578)
.|+++++....-..++.+++.-+..........|.. ..+++.++ ....++.+++.-++... -..++|.++-|
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~---~~~~~~~~~p~~rr~~~--~T~~e~l~~Rf 105 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGG---YVLLALLLAPYLRKFGK--YTVPDFIGDRY 105 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHH---HHHHHHHHHHHHHHCCC--ccHHHHHHHHh
Confidence 488999998776667777765555443333334542 22233232 23345666777777654 57899999888
Q ss_pred c-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008094 135 N-ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE 170 (578)
Q Consensus 135 g-~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~ 170 (578)
| +....+++....+......+......+..++.+.+
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g 142 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE 142 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 8 44677777666665555555556666666665543
No 92
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=97.04 E-value=0.17 Score=52.04 Aligned_cols=308 Identities=14% Similarity=0.111 Sum_probs=142.0
Q ss_pred CCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhh--
Q 008094 55 EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP--GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYA-- 130 (578)
Q Consensus 55 ~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~--~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~-- 130 (578)
++-+|..++++-..+=.+..+..+-+...+..++.|-. ..++..+++-++.......- .+ .|..|+-.
T Consensus 50 ~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~f~~ln-------s~-~G~~yhIsFp 121 (572)
T KOG2466|consen 50 PPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAIFLVLN-------SR-PGSDYHISFP 121 (572)
T ss_pred CcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHHHHHHc-------cC-CCccccccee
Confidence 44568899999988888877777777777777766543 47777666666544333222 22 45555433
Q ss_pred --HH-HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccCCCCccccCCCccccccchhhhHHHHHHHH
Q 008094 131 --YT-AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILEL-FPFFKENIPSWIGHGGEEFLGGTLSINILAPILLA 206 (578)
Q Consensus 131 --~~-~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (578)
+| .||-..+-.--..-.+--++.-+..+...++.++.++.. ++. ..+.|+++... +.....++...+..
T Consensus 122 v~sR~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~-~~hipntl~~~------~~tt~e~i~FfIFw 194 (572)
T KOG2466|consen 122 VLSRSSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKS-FSHIPNTLGKP------GTTTYEFIGFFIFW 194 (572)
T ss_pred eeeeeehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhh-hhcCccccCCC------CCchHHHHHHHHHH
Confidence 22 244332222222222222333344555556665555532 233 34556665432 22223334444444
Q ss_pred HHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--C-CCCCCCCCChHHHHHHHHHHHhhccchHHHhhhh
Q 008094 207 LLT-IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDV--S-NWSPFAPNGFKEILTGATVVFFAYVGFDAVANSA 282 (578)
Q Consensus 207 ~~~-~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~ 282 (578)
++. .+..++.....++...-.++.....+.+.+...-+.+. + ..++-.+.|..-...-+-....++.++.....-.
T Consensus 195 v~s~~~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~ 274 (572)
T KOG2466|consen 195 VASLPFYWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNA 274 (572)
T ss_pred HHhhheeeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccC
Confidence 433 33446666666665555555544445555544433221 1 1111222222111112223455556655554444
Q ss_pred hhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccc--ccc-CC--CChHHHHHHH-------cChhHHHHHHHHHHH
Q 008094 283 EESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPY--KFL-DE--DAPLSDAFAS-------RGLKYVSVLISFGAV 350 (578)
Q Consensus 283 ~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~--~~~-~~--~~p~~~~~~~-------~~~~~~~~~~~~~~~ 350 (578)
.|..+=.|+ |.+.+.+.+++..+...+.-.+...+.. +.+ +. -+|+ |++.+ .|......++.+...
T Consensus 275 pDFsRF~ks-p~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pl-dil~~~l~~~y~~G~RAgvFfi~~~f~ 352 (572)
T KOG2466|consen 275 PDFSRFAKS-PNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPL-DILNQWLDTNYSAGARAGVFFIGFGFA 352 (572)
T ss_pred chhHhhcCC-CCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHH-HHHHHHhccccccccchhhhHHHHHHH
Confidence 443222221 3333344443332221111111111111 111 11 1232 33333 256677778887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhh
Q 008094 351 AGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAK 383 (578)
Q Consensus 351 ~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~ 383 (578)
++.+++..+.-..+ -++.-.+.+||++.-
T Consensus 353 laql~~NISan~va----agnDl~~L~PkyinI 381 (572)
T KOG2466|consen 353 LAQLGTNISANSVA----AGNDLSALLPKYINI 381 (572)
T ss_pred HHHHhcchhccccc----cchhhHhhCcceEEe
Confidence 77777665432211 233334577876654
No 93
>PLN00150 potassium ion transporter family protein; Provisional
Probab=97.04 E-value=0.11 Score=57.12 Aligned_cols=219 Identities=13% Similarity=0.122 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhc---ccccCCCCCCCC---------CChHHHHHHH
Q 008094 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF---EVDVSNWSPFAP---------NGFKEILTGA 265 (578)
Q Consensus 198 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~---------~g~~~~~~~~ 265 (578)
..+++++++.++.+.-+|....++. +.-+.++=++.+...|+. ..+++-+..++| ++..+| ..+
T Consensus 215 v~is~~ILv~LF~iQ~~GT~kVg~~---FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g~-~~L 290 (779)
T PLN00150 215 TIISCVILVILFSLQRFGTHKVSFL---FAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIRNGRQGW-ESL 290 (779)
T ss_pred hhhHHHHHHHHHHHHhccchhhhhh---hccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHhCCCceE-EEe
Confidence 3577888888888898998777764 444444444444444443 333333333333 222111 123
Q ss_pred HHHHhhccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHHHHHH
Q 008094 266 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLI 345 (578)
Q Consensus 266 ~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 345 (578)
-.++.+.+|.|+.- ++-=.-.+|.+-.|-..-+.=+.++--+..-+....-|.+ .++|+.. ...+++.+-+
T Consensus 291 G~V~L~iTGaEALy--ADlGHFg~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p~~---~~npFf~----~iP~~~~~P~ 361 (779)
T PLN00150 291 GGIVLCMTGTEAMF--ADLGHFTVKSMQIAFTSLVYPCLLLTYLGQAAYLVKHMED---VNDPFYR----SLPKPIYWPI 361 (779)
T ss_pred cceeeeecchhhhh--ccccCCCccceeeeehhhHHHHHHHHHcchHHHHhcCccc---ccCcHHH----hCCchhHHHH
Confidence 34567888999653 2222333566655543333322222112222222222211 2345433 3344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhhhhcC--CCC--cchhHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 008094 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHP--KRH--TPVHSQVWVGIVAGILAGLFNVRVLSHILSV 420 (578)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~--r~~--~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~ 420 (578)
.+.+.++..-+..+.+.++=-++.+.-+-|.+|+ ..-|+++ +.| .|..-.+++.....+...+-+.+.+.+...+
T Consensus 362 ~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGi 441 (779)
T PLN00150 362 FVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDTDEIGNAYGI 441 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEecChHHHHHHhhh
Confidence 4444444443334444444455556666789994 2333332 233 3433222222222222233467778887777
Q ss_pred HHHHHHHHH
Q 008094 421 GTLTGYSVV 429 (578)
Q Consensus 421 ~~l~~y~~~ 429 (578)
+.....++.
T Consensus 442 AV~~vM~iT 450 (779)
T PLN00150 442 AVVGVMIIT 450 (779)
T ss_pred heehhhHHH
Confidence 765544433
No 94
>PLN00149 potassium transporter; Provisional
Probab=96.99 E-value=0.37 Score=53.22 Aligned_cols=221 Identities=11% Similarity=0.041 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhc---ccccCCCCCCCCC---------ChHHHHHHHH
Q 008094 199 ILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF---EVDVSNWSPFAPN---------GFKEILTGAT 266 (578)
Q Consensus 199 ~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~---------g~~~~~~~~~ 266 (578)
.+++++++.++.+.-+|....++. +.-+.++=++.+...|+. +.+++-+..++|. +..+| ..+-
T Consensus 200 ~is~~ILv~LF~~Q~~GT~kvg~~---FgPIml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~~~~~~~g~-~~LG 275 (779)
T PLN00149 200 PVACIILIGLFALQHYGTHRVGFL---FAPVVLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFLKKTQRGGW-MSLG 275 (779)
T ss_pred HHHHHHHHHHHHHhccccHHHhhh---hhhHHHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHHHHCCCcee-Eeec
Confidence 477888888888888998777764 444444444444444443 3344444444342 22121 1233
Q ss_pred HHHhhccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHHHHHHH
Q 008094 267 VVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLIS 346 (578)
Q Consensus 267 ~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 346 (578)
-++.+.+|.|+.- ++-=.-.+|.+..|-..-+.=+.++--+..-+....-|...-+-.+|+.. ...+++.+-+.
T Consensus 276 gV~L~iTG~EALy--ADlGHF~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~----~iP~~~~~P~~ 349 (779)
T PLN00149 276 GILLCITGSEAMF--ADLGHFSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYV----SVPEKLRWPVL 349 (779)
T ss_pred chhhcccchhhhh--hcccCCCccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHH----hCCchhHHHHH
Confidence 4567888999653 22223345666555433333233222222222222223211112335433 33344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhhhhcC--CCC--cchhHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 008094 347 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHP--KRH--TPVHSQVWVGIVAGILAGLFNVRVLSHILSVG 421 (578)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~--r~~--~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~ 421 (578)
+.+.++..-+..+.+.++=-++.+.-+-|.+|+ ..-|+++ +.| .|..-.+++.....+...+-+.+.+.+...++
T Consensus 350 vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiA 429 (779)
T PLN00149 350 VIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNASGLA 429 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChHHHHHHhhhh
Confidence 444444443334444444455556666789994 2333332 233 34333222222222233334677788877777
Q ss_pred HHHHHHHH
Q 008094 422 TLTGYSVV 429 (578)
Q Consensus 422 ~l~~y~~~ 429 (578)
.....++.
T Consensus 430 V~~vM~iT 437 (779)
T PLN00149 430 VITVMLVT 437 (779)
T ss_pred hehHHHHH
Confidence 65544433
No 95
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=96.57 E-value=1.2 Score=48.20 Aligned_cols=221 Identities=14% Similarity=0.082 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc--ccCCCCCCCC---------CChHHHHHHHH
Q 008094 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV--DVSNWSPFAP---------NGFKEILTGAT 266 (578)
Q Consensus 198 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~---------~g~~~~~~~~~ 266 (578)
..+++++++.++.++-+|....++. ++-+.++=.+.+.+.|+.+. +++-+..++| ++..++ ..+.
T Consensus 144 vpit~~ILv~LF~iQ~~GT~~vG~~---FgPIm~vWF~~i~~~Gi~~I~~~P~Vl~AlnP~ya~~f~~~~~~~gf-~~LG 219 (622)
T PRK10745 144 VPLSIIVLTLLFMIQKHGTGMVGKL---FAPIMLTWFLTLAVLGLRSIIANPEVLHALNPMWAVHFFLEYKTVSF-FALG 219 (622)
T ss_pred HHHHHHHHHHHHHHhccccHHHhhh---hhhHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHhCCCceE-EEec
Confidence 3477788888888888888777764 55554444444444444322 2222222222 122111 1223
Q ss_pred HHHhhccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHHHHHHH
Q 008094 267 VVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLIS 346 (578)
Q Consensus 267 ~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 346 (578)
.++.+.+|-|+.- ++-=+-.||.+.+|-..-+.=+.++--+.+-+....-|.. .++|+... ...++.+-+.
T Consensus 220 ~V~L~vTGaEALY--ADmGHFG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~p~~---~~NpFf~~----~P~~~~~p~v 290 (622)
T PRK10745 220 AVVLAITGVEALY--ADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNPEA---IKNPFFLL----APDWALIPLL 290 (622)
T ss_pred ceeeeccchHHHh--hccCCCCccceeeeehhhHHHHHHHHhcchHHHHhcCchh---hcCcHHHh----CChhHHHHHH
Confidence 4567888999652 2222334566655543333222222112222222222211 24555443 3345544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhhhhcC--CCCcchhHHHHHHHHH--HHHHhhcCHHHHHHHHHHH
Q 008094 347 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHP--KRHTPVHSQVWVGIVA--GILAGLFNVRVLSHILSVG 421 (578)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~--r~~~P~~ail~~~~i~--~i~~~~~~~~~l~~~~~~~ 421 (578)
+.+.++..-+..+.+.++=-+..+.-+-|.+|+ ...+.++ +.|.-+..+=+...+. .+...+-+.+.+.+...++
T Consensus 291 iLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La~AYGiA 370 (622)
T PRK10745 291 ILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAYGIA 370 (622)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHHHHHhhhh
Confidence 444444444444444444455556667789994 2333332 3344333332222222 2222334667788777777
Q ss_pred HHHHHHHHHH
Q 008094 422 TLTGYSVVSA 431 (578)
Q Consensus 422 ~l~~y~~~~~ 431 (578)
......+..+
T Consensus 371 Vt~tM~iTT~ 380 (622)
T PRK10745 371 VTGTMVLTSI 380 (622)
T ss_pred heeHhHHHHH
Confidence 6555444443
No 96
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=96.44 E-value=0.24 Score=54.17 Aligned_cols=221 Identities=10% Similarity=0.069 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc---cccCCCCCCCC---------CChHHHHHHH
Q 008094 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE---VDVSNWSPFAP---------NGFKEILTGA 265 (578)
Q Consensus 198 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~---------~g~~~~~~~~ 265 (578)
..+++++++.++.+.-+|....++. ++.+.++=.+.+.+.|+.+ .+++-+..++| ++..++ ..+
T Consensus 169 v~it~~ILv~LF~iQ~~GT~kvg~~---FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~~~~~~~-~~L 244 (688)
T TIGR00794 169 VPISCIILVLLFLIQRFGTAKVGFT---FAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIEYGTVGW-VSL 244 (688)
T ss_pred hhHHHHHHHHHHHHhccccHHHhhh---hhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHHCCCcee-eec
Confidence 3577788888888888998777764 5555444444444444432 23333333333 222222 133
Q ss_pred HHHHhhccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHHHHHH
Q 008094 266 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLI 345 (578)
Q Consensus 266 ~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 345 (578)
..++.+.+|-|+.-. +-=.-.||.+-.|-..-+.-+.++--+..-+....-|.. ..+|+... ..+++.+-+
T Consensus 245 G~V~L~iTGaEALyA--DmGHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p~~---~~NpFf~~----~P~~~~~p~ 315 (688)
T TIGR00794 245 GGVVLSITGVEAMFA--DLGHFGKLPIQLAWFTFVYPSLILCYIGQAAYLSKHPEA---IKNPFFLS----IPDWALWPL 315 (688)
T ss_pred cchhheeccHhhhhc--ccCCCCcccceeehHHHHHHHHHHHHcchHHHHhcCcch---hcCcHHHh----CchHHHHHH
Confidence 346778889997632 222233455655543233222222222222222222221 14455433 344555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhhhhcC--CCCcchhHH--HHHHHHHHHHHhhcCHHHHHHHHHH
Q 008094 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHP--KRHTPVHSQ--VWVGIVAGILAGLFNVRVLSHILSV 420 (578)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~--r~~~P~~ai--l~~~~i~~i~~~~~~~~~l~~~~~~ 420 (578)
.+.+.++..-+..+.+.++=-+..+.-+-|.+|+ ..-++++ +.|.-+..+ +++.....+...+-+.+.+.+...+
T Consensus 316 ~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AYGi 395 (688)
T TIGR00794 316 FIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAYGI 395 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHHHHhhh
Confidence 4444444444444444445555666667789994 2333332 334333332 2222222223334467788888877
Q ss_pred HHHHHHHHHHH
Q 008094 421 GTLTGYSVVSA 431 (578)
Q Consensus 421 ~~l~~y~~~~~ 431 (578)
+.....++..+
T Consensus 396 aVt~tM~iTT~ 406 (688)
T TIGR00794 396 AVTGTFLVTTC 406 (688)
T ss_pred hhhhhhHHHHH
Confidence 76655554444
No 97
>PLN00148 potassium transporter; Provisional
Probab=95.85 E-value=0.21 Score=55.03 Aligned_cols=218 Identities=9% Similarity=0.061 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhh---cccccCCCCCCCC---------CChHHHHHHH
Q 008094 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGA---FEVDVSNWSPFAP---------NGFKEILTGA 265 (578)
Q Consensus 198 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~---------~g~~~~~~~~ 265 (578)
..+++++++.++.+.-+|....+++ +.-+.++=++.+...|+ .+.+++-+..++| ++..+| ..+
T Consensus 198 v~is~~ILv~LF~vQ~~GT~kVg~~---FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g~-~~L 273 (785)
T PLN00148 198 VLLACVILVGLFALQHCGTHRVAFM---FAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKFFRVTGKDGW-ISL 273 (785)
T ss_pred hhHHHHHHHHHHHHhccccHHHHhh---hhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHHHHhCCCceE-Eee
Confidence 3477788888888888998777764 44444444444444443 3334444443433 222121 123
Q ss_pred HHHHhhccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHHHHHH
Q 008094 266 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLI 345 (578)
Q Consensus 266 ~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 345 (578)
-.++.+.+|.|+.-. +-=.-.+|.+.+|-..-+.=+.++--+..-+....-|.+ .++|+.. ...+++.+-+
T Consensus 274 GgV~L~iTGaEALyA--DlGHFg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p~~---~~npFf~----~iP~~~~~P~ 344 (785)
T PLN00148 274 GGILLSITGTEAMFA--DLGHFTAASIRLAFATVIYPCLVVQYMGQAAFLSKNIPS---IPNSFYD----SIPDPVFWPV 344 (785)
T ss_pred cchheeccchhhhhh--hccCCCccceEEeeeehHHHHHHHHHcchHHHHhcCccc---ccCcHHH----hCCchhHHHH
Confidence 345678889997532 222333566655543332222222112222222222321 2345433 2334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhhhhcCC--CC--cchhHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 008094 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPK--RH--TPVHSQVWVGIVAGILAGLFNVRVLSHILSV 420 (578)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~r--~~--~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~ 420 (578)
.+.+.++..-+..+.+.++=-++.+.-+-|.+|+ ..-|++++ .| .|..-.+++.....+...+-+.+.+.+...+
T Consensus 345 ~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~AYGi 424 (785)
T PLN00148 345 FVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTLIGNAYGL 424 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccchhHHHhhhh
Confidence 4444444333334444444455555666789994 33344433 23 3443323333332333334466777777777
Q ss_pred HHHHHHHH
Q 008094 421 GTLTGYSV 428 (578)
Q Consensus 421 ~~l~~y~~ 428 (578)
+.....++
T Consensus 425 AV~~vM~i 432 (785)
T PLN00148 425 ACMTVMFI 432 (785)
T ss_pred heeeHHHH
Confidence 66544433
No 98
>PRK09928 choline transport protein BetT; Provisional
Probab=93.87 E-value=13 Score=41.18 Aligned_cols=90 Identities=8% Similarity=-0.156 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHH--
Q 008094 343 VLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSV-- 420 (578)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~-- 420 (578)
.++.+..++.++....++.-+.+-.+-.++-.|.-|+- -.|+.+.=.+++ +.++++..+.....++.+-.+..+
T Consensus 409 ~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~---~pp~~~RifW~v-~ig~la~~LL~~GGL~aLQt~sii~a 484 (679)
T PRK09928 409 TFSASVATITGLLFYVTSADSGALVLGNFTSKLKDINS---DAPNWLRVFWSV-AIGLLTLGMLMTNGISALQNTTVIMG 484 (679)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCCC---CCCcceeeHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33444444444555566667777777777765543311 112333334443 334444444444556554444433
Q ss_pred -HHHHHHHHHHHHHhhh
Q 008094 421 -GTLTGYSVVSACVIAL 436 (578)
Q Consensus 421 -~~l~~y~~~~~~~~~~ 436 (578)
-+.+..++.+.+.++.
T Consensus 485 lPf~~I~ll~~~sl~k~ 501 (679)
T PRK09928 485 LPFSFVIFFVMAGLYKS 501 (679)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3444455555555543
No 99
>PRK09950 putative transporter; Provisional
Probab=93.82 E-value=11 Score=40.34 Aligned_cols=102 Identities=6% Similarity=-0.091 Sum_probs=48.5
Q ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhh
Q 008094 329 LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL 408 (578)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~ 408 (578)
+.+.+++.. ...++....++.++....+..-+++..+-.++.+|.-++ +-.+|...=.+++ ..++++..+...
T Consensus 391 ~~~~l~~lP---~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~~---~~P~~~~ri~W~i-~~g~ia~~Ll~~ 463 (506)
T PRK09950 391 VQQLLSSLP---AGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRNLREG---DDPDRGLRLFWCV-VITLIPLSILFT 463 (506)
T ss_pred HHHHHHhCc---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCC---CCCCcchhHHHHH-HHHHHHHHHHHh
Confidence 334444442 334445555555566666777778888887776554221 1011222223333 333333334344
Q ss_pred cC-HHHHHHHHHH---HHHHHHHHHHHHHhhhe
Q 008094 409 FN-VRVLSHILSV---GTLTGYSVVSACVIALR 437 (578)
Q Consensus 409 ~~-~~~l~~~~~~---~~l~~y~~~~~~~~~~r 437 (578)
.. ++.+-++..+ -..+...+.+.+.++.-
T Consensus 464 gG~l~~lQ~~~ii~alP~~~i~~l~~~s~~k~l 496 (506)
T PRK09950 464 GASLDTMKTTVVLTALPFLVILLIKVYGFIRWL 496 (506)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 6554444443 33444455555555443
No 100
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=92.68 E-value=2.2 Score=46.20 Aligned_cols=60 Identities=13% Similarity=0.284 Sum_probs=32.2
Q ss_pred cCCCCCCCccccccc----hHHHHHHHHHHHHhhcC----------CHHHHH-----HHHHHHHHHHHHHhhhcccccC
Q 008094 502 HGYSDPPGFSCPGVP----LLPAVSIFFNLFLFAQL----------HYEAWW-----RFVILSFISIGLYAFYGQYHAD 561 (578)
Q Consensus 502 ~~~~~~~~~~~p~~p----~~~~~~~~~~~~~~~~~----------~~~~~~-----~~~~~~~~g~~~y~~~~~~~~~ 561 (578)
|+.+.+|+||+|+.| +...++++.+++.+... +...+. ...++.+++.++|..+++|+++
T Consensus 388 k~p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v~~~~Pp~~~~~~~~~~y~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 466 (507)
T TIGR00910 388 KHPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFFISFLPPANIAGDETDMYQEILLISFLVTAALPFIIYALHDKKGHA 466 (507)
T ss_pred hcCCCCCCeEecCCccchhhHHHHHHHHHHHHHheeeeCCCccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 333347889999765 45566666665543311 111111 1133456777777766655443
No 101
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=91.20 E-value=27 Score=38.50 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=32.0
Q ss_pred ChhHHHHHHhhhhhhhhHHHH-HHHHHhhhCcHHHHHHHHHHHH-HHHH
Q 008094 62 GLFELVLIGVGASVGAGIFVV-TGTVARDAGPGVTISFLLAGAA-SVLN 108 (578)
Q Consensus 62 ~~~~~~~~~i~~~ig~g~~~~-~~~~~~~~G~~~~~~~ii~~l~-~~~~ 108 (578)
+..+...-.+|..+|-|=... |...+++||.+.++.+++..++ .++.
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~ 87 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPL 87 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchH
Confidence 566777778888888777764 5556777887766666665554 4443
No 102
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=91.06 E-value=5.9 Score=42.42 Aligned_cols=58 Identities=9% Similarity=0.117 Sum_probs=30.5
Q ss_pred cCCCCCCCccccccch----HHHHHHHHHHHHhhcC-----------CHH-HHHHHHHHHHHHHHHHhhhcccc
Q 008094 502 HGYSDPPGFSCPGVPL----LPAVSIFFNLFLFAQL-----------HYE-AWWRFVILSFISIGLYAFYGQYH 559 (578)
Q Consensus 502 ~~~~~~~~~~~p~~p~----~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~g~~~y~~~~~~~ 559 (578)
|+.+.+|+||+|..|+ +..++++.+++.+... +.+ +....++.+++..+.|+.+++||
T Consensus 385 ~~~~~~rpf~~p~g~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ny~~~~~~~~~~~~~~~~~~~~~~~ 458 (474)
T TIGR03813 385 SQPDRPRPYRIPGGLAGMWFIGGLGFVGSALAFVLSFIPPSQIGTGSPTRYVGLLIGLAALFVTAPFLIYARRK 458 (474)
T ss_pred cCCCCCCCeEecCCccchhHHHHHHHHHHHHHHheeEeCCcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334578899987544 4555555555443311 111 23344455556666666666554
No 103
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=90.10 E-value=32 Score=37.41 Aligned_cols=101 Identities=15% Similarity=0.202 Sum_probs=54.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccc---------cCCCCCCCCCChHHHHHHHHHHHhhcc-chHHHhh
Q 008094 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD---------VSNWSPFAPNGFKEILTGATVVFFAYV-GFDAVAN 280 (578)
Q Consensus 211 i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~~g~~~~~~~~~~~~~~~~-G~e~~~~ 280 (578)
...+|+|..+|+......+..+.++++.+-++...+ ..+|+.+.+ ..-+..+...++|+.. |+-....
T Consensus 194 ~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~--~~vW~~A~~Q~ffsl~ig~G~~it 271 (523)
T PF00209_consen 194 GIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLD--PKVWIAALGQVFFSLSIGFGIMIT 271 (523)
T ss_dssp TTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTS--HHHHHHHHHHHHHHTTTTSSHHHH
T ss_pred heEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhH--HHHHHHHHHHHhhccCCCcceEEE
Confidence 345789998888776655444444444433221110 122333222 2345667778888874 7777777
Q ss_pred hhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 008094 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVL 314 (578)
Q Consensus 281 ~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~ 314 (578)
++.-.|+ ++|++|...........+.++..+++
T Consensus 272 ~~Sy~~~-~~n~~~~a~~v~~~~~~~sllag~~i 304 (523)
T PF00209_consen 272 YGSYNKF-KNNIFRDALIVAFINTLVSLLAGLVI 304 (523)
T ss_dssp HHTTS-T-TS-SHHHHHHHHHHHHHHHHTTGTHH
T ss_pred EcCcCCC-CccccccceEEEcCchhhhHhHHHHH
Confidence 7877776 57888876666655555554444333
No 104
>COG4025 Predicted membrane protein [Function unknown]
Probab=89.87 E-value=3.1 Score=38.61 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhcCCCc
Q 008094 363 VQSRLYLGLGRDGLLP 378 (578)
Q Consensus 363 ~~sR~l~~~a~d~~lP 378 (578)
..-|-...+.||+.+|
T Consensus 55 ~~ve~v~e~~re~~i~ 70 (284)
T COG4025 55 SKVEKVMEKVREFQIP 70 (284)
T ss_pred HHHHHHHHHHhcCCCc
Confidence 4567888999999887
No 105
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=88.98 E-value=36 Score=36.46 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 008094 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF 243 (578)
Q Consensus 198 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 243 (578)
..++.++++..+.+.-.|....++ ++.-+.++-.+.+...|+.
T Consensus 149 vpitl~IL~~LF~iQ~~GT~~Vg~---~FGPVm~lWF~~l~~~Gl~ 191 (627)
T COG3158 149 VPITLIILVLLFLIQRFGTGRVGK---LFGPVMLLWFLALAVLGLI 191 (627)
T ss_pred HHHHHHHHHHHHHHhcccchhhhh---hhccHHHHHHHHHHHHHHH
Confidence 357777788888888888877776 4555555555555555554
No 106
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=86.04 E-value=50 Score=34.94 Aligned_cols=90 Identities=14% Similarity=0.022 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcC-HHHHHHHHHH
Q 008094 342 SVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFN-VRVLSHILSV 420 (578)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~-~~~l~~~~~~ 420 (578)
..++....++..+....+..-+++..+-.++.++.-++- + .||...=.+++.+ ++++..+..... ++.+-.+..+
T Consensus 355 ~~i~~~l~~il~~if~vTs~DS~s~vla~~~s~~g~~~~--e-p~~~~ri~W~v~i-g~~a~~ll~~gG~l~~lQ~~~ii 430 (453)
T TIGR00842 355 GTITSALALIVIIIFFITSADSGALVLANTSSRGGQLGE--E-PPKWVRVFWAVAI-GLIALVLLFSGGSLAALQTTAII 430 (453)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCCC--C-CCcccchHHHHHH-HHHHHHHHHhcCcHHHHHHHHHH
Confidence 334444445555556666677777777777543322110 0 1122223344333 333344444444 6554444444
Q ss_pred H---HHHHHHHHHHHHhh
Q 008094 421 G---TLTGYSVVSACVIA 435 (578)
Q Consensus 421 ~---~l~~y~~~~~~~~~ 435 (578)
+ ..+..++.+.+.++
T Consensus 431 ~alP~~~i~~l~~~sl~k 448 (453)
T TIGR00842 431 AALPFSLVMLVVMASLIK 448 (453)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 3 34444455555443
No 107
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=85.54 E-value=45 Score=33.90 Aligned_cols=208 Identities=13% Similarity=0.118 Sum_probs=106.8
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHH
Q 008094 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (578)
Q Consensus 134 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (578)
-++..-+.++....+.+...+...-.+.+..+....+. +. .....+.+..+ ...-..
T Consensus 117 ~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gi-dY-------------------~tgL~ifa~~V---~iYt~f 173 (473)
T COG4145 117 QSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGI-DY-------------------TTGLLIFAVSV---AIYTAF 173 (473)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCC-Cc-------------------hhhHHHHHHHH---HHHHhh
Confidence 46777888888888888777777777777777766542 10 00111111111 112222
Q ss_pred hhhH---HHHHHHHHHHHHHHHHHHHHHhh---hhc-------ccccCCCCCCCCCC---hHHHHHHHHHHHhhccchHH
Q 008094 214 WGVG---ESSVLNSCMTVVKVIIVIVVIFA---GAF-------EVDVSNWSPFAPNG---FKEILTGATVVFFAYVGFDA 277 (578)
Q Consensus 214 ~g~~---~~~~~~~~~~~~~~~~~~~~~i~---~~~-------~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~G~e~ 277 (578)
-|.| .+..+|-.......+.+++..+- |+. ..|++-..|...+. ..-+.+-....++.-.|--.
T Consensus 174 GGFRAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~ 253 (473)
T COG4145 174 GGFRAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPH 253 (473)
T ss_pred cceeeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHHHHHHHHhcCcH
Confidence 3444 34445554444443333333321 111 11222222211111 11112222334455555544
Q ss_pred HhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhc--cccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHH
Q 008094 278 VANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTG--MVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTT 355 (578)
Q Consensus 278 ~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (578)
.+.-.-..|| +|.+.++|+.+..++.++.+.+-.+-.. .+-+|.-..|.-+...+-+...|....++..+.+.+.++
T Consensus 254 t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~graViPdlt~~D~Vip~lalkvlpp~~agifl~apmaAiMS 332 (473)
T COG4145 254 TAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTVVDLVIPTLALKVLPPFAAGIFLAAPMAAIMS 332 (473)
T ss_pred HHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCccchhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4444555677 4789999999988888876665543221 121221123334555666666777666776777777788
Q ss_pred HHHHHHHHHH
Q 008094 356 TLLVGLYVQS 365 (578)
Q Consensus 356 ~~~~~~~~~s 365 (578)
+.++.+.-.|
T Consensus 333 TIds~L~~~s 342 (473)
T COG4145 333 TINSQLLQSS 342 (473)
T ss_pred HHHHHHHHHH
Confidence 7777655444
No 108
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=83.27 E-value=42 Score=36.17 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=8.7
Q ss_pred hcCCCCcchhHHH
Q 008094 384 VHPKRHTPVHSQV 396 (578)
Q Consensus 384 ~~~r~~~P~~ail 396 (578)
.|||++.|.....
T Consensus 238 ~~p~~~~p~ai~~ 250 (496)
T PRK15238 238 ENPEKNFPKGIII 250 (496)
T ss_pred cCCCccccHHHHH
Confidence 3677788876543
No 109
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=83.26 E-value=15 Score=36.56 Aligned_cols=238 Identities=13% Similarity=0.120 Sum_probs=116.6
Q ss_pred CcccccChhHHHHHHhhhhhhhhHHHH-HHHHHhhhCcHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCCccc------hh
Q 008094 56 GLLRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGPGVTISFLLAGAASVLNALCY-AELASRFPAVVGG------AY 127 (578)
Q Consensus 56 ~l~r~l~~~~~~~~~i~~~ig~g~~~~-~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~-ael~~~~P~~~GG------~y 127 (578)
+-+.+++-+++..-....+- |.|.. .+.+...+|-..+.+++..+.++-.+.-.+ .=+-..-|+ |- .|
T Consensus 112 e~~~kI~a~qAaWNVTNAIQ--GMFivgLP~AvlhGGyw~i~amvg~A~vCcyTGk~Li~CLYE~~~d--GevVrvRdsY 187 (524)
T KOG4303|consen 112 EASEKISALQAAWNVTNAIQ--GMFIVGLPIAVLHGGYWSIGAMVGVAYVCCYTGKLLIECLYENGED--GEVVRVRDSY 187 (524)
T ss_pred CCCCccHHHHHhhhhhhhhh--eeeEeccceeeeEcchhHHHHHHhhhhhhhccchhhhhhhccCCCC--CcEEEeehhH
Confidence 33467888887654444442 33332 333444577666666555544432222211 112122222 21 24
Q ss_pred hhhHHH-hchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHH
Q 008094 128 LYAYTA-FNELTA-FLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILL 205 (578)
Q Consensus 128 ~~~~~~-~g~~~g-~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (578)
.-+.+. ++|..| -.+.-+..+....++..+....++.+.+- +|....+...|. ++.-+.+
T Consensus 188 vaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~---fP~~svd~~sWm---------------~i~~a~L 249 (524)
T KOG4303|consen 188 VAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSC---FPGLSVDKASWM---------------MITSASL 249 (524)
T ss_pred HHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhcc---CCCCCccccchh---------------hhhhHHH
Confidence 444444 566555 44444555555566666666666665543 343222333443 1222222
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCC-CCCChHHHHHHHHHHHhhccchHHHhhhhhh
Q 008094 206 ALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPF-APNGFKEILTGATVVFFAYVGFDAVANSAEE 284 (578)
Q Consensus 206 ~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E 284 (578)
+-..+ +...|...++..+.+...+++-++++.-.+.....=.|... .+-....+-..+-.+.|+|+.---..++-+.
T Consensus 250 Lpc~F--Lk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGN 327 (524)
T KOG4303|consen 250 LPCSF--LKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGN 327 (524)
T ss_pred hhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccc
Confidence 22222 34556777777777777777666655544433221112100 0000001111223356777776667788889
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccc
Q 008094 285 SKKPQRDLPIGILGSLLICAALYVGVSLVLTGMV 318 (578)
Q Consensus 285 ~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~ 318 (578)
+|||.+ +---+-++-+...++=.+.........
T Consensus 328 M~~ps~-Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf 360 (524)
T KOG4303|consen 328 MKNPSQ-FNVMLKWSHIAAAVFKVVFGMLGFLTF 360 (524)
T ss_pred cCChhH-heeeeehHHHHHHHHHHHHHHheeeee
Confidence 999964 445566777777766555544444333
No 110
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=81.35 E-value=83 Score=33.84 Aligned_cols=102 Identities=13% Similarity=0.001 Sum_probs=48.8
Q ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhh
Q 008094 329 LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL 408 (578)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~ 408 (578)
+.+.+++.. +..++.+..++.++....+...+++..+-.++.+|.-++- -.||...=.+++ ..++++..+...
T Consensus 394 lf~~l~~lP---l~~i~~~l~~il~~if~vTsaDS~t~vla~~ts~g~~~~~---~p~~~~ri~W~v-~ig~ia~~Ll~~ 466 (504)
T PRK03356 394 IIETWAALP---LSTATMWGFFILCFIATVTLINACSYTLAMSTCREVRDGE---EPPLLVRIGWSI-LVGIIGIVLLAL 466 (504)
T ss_pred HHHHHHHCc---HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCCCC---CCCcchhhHHHH-HHHHHHHHHHHh
Confidence 344444442 3334444445555556667777788888888776532211 111222233343 333333434344
Q ss_pred cCHHHHHHHH---HHHHHHHHHHHHHHHhhhe
Q 008094 409 FNVRVLSHIL---SVGTLTGYSVVSACVIALR 437 (578)
Q Consensus 409 ~~~~~l~~~~---~~~~l~~y~~~~~~~~~~r 437 (578)
..++.+-.+. ++-..+...+.+.+.++.-
T Consensus 467 GGl~~lQt~sii~alPf~~i~~l~~~sl~k~l 498 (504)
T PRK03356 467 GGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDA 498 (504)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555444444 3334444455555555443
No 111
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=81.19 E-value=73 Score=33.10 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=31.1
Q ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 329 LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 371 (578)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 371 (578)
..+.++...++....++.++.+.+-.++..+..++..-.....
T Consensus 282 ~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gf 324 (390)
T TIGR01197 282 IGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGF 324 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4455666777888888988888888888888777655544443
No 112
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=78.12 E-value=0.69 Score=44.02 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=0.0
Q ss_pred hhcCCCCcchhHHHHH
Q 008094 383 KVHPKRHTPVHSQVWV 398 (578)
Q Consensus 383 ~~~~r~~~P~~ail~~ 398 (578)
+.+||--.|...+++.
T Consensus 13 ~r~pr~p~~~a~l~~~ 28 (381)
T PF05297_consen 13 RRPPRCPQPHASLLFG 28 (381)
T ss_dssp ----------------
T ss_pred CCCCCCCCcchhHHHH
Confidence 4566655666555443
No 113
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=77.95 E-value=24 Score=35.71 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhe
Q 008094 414 LSHILSVGTLTGYSVVSACVIALR 437 (578)
Q Consensus 414 l~~~~~~~~l~~y~~~~~~~~~~r 437 (578)
+.-++.++....|.+...+++.++
T Consensus 167 f~~l~gl~~~~~~~l~Ga~~l~~k 190 (346)
T COG1294 167 FALLCGLGLVLMYVLHGAAWLLLK 190 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566667777777777777
No 114
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=77.58 E-value=1.1e+02 Score=33.29 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 008094 197 INILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE 244 (578)
Q Consensus 197 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 244 (578)
.......++++...+|..|++..+-........|++..+-+++.++..
T Consensus 155 ~~~~~~~fla~~v~in~~gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi 202 (554)
T KOG1286|consen 155 PGGWIPDFLAFILIINLFGVLAYGEVEFSLAFNKILTAVGFIILAIVI 202 (554)
T ss_pred CCccHHHHHHHHHHHHHHHHhhccceeehHHHHHHHHHHHHHHhheee
Confidence 356677888999999999999999999999999999998888887764
No 115
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=75.91 E-value=1.2e+02 Score=32.60 Aligned_cols=88 Identities=16% Similarity=0.117 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHH---H
Q 008094 344 LISFGAVAGLTTTLLVGLYVQSRLYLGLGRDG-LLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHIL---S 419 (578)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~-~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~---~ 419 (578)
+..+..++....-..++..+++-++-.++..| .-|+.+-|+- ++ ++.++++..+.....++.+-+.. .
T Consensus 406 v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r~~-------W~-v~~~~ia~~lL~~ggl~aLqt~~ii~a 477 (537)
T COG1292 406 LTSLLALLVIAIFFVTSADSGSYVLAMISSRGGEDPPRWVRVF-------WG-VLIGLIAAVLLLIGGLEALQTAAIITA 477 (537)
T ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHhccCCCCChHHHHHH-------HH-HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33333344444445567778888888887765 3343333322 33 34444445455555555444443 3
Q ss_pred HHHHHHHHHHHHHHhhheec
Q 008094 420 VGTLTGYSVVSACVIALRWK 439 (578)
Q Consensus 420 ~~~l~~y~~~~~~~~~~r~~ 439 (578)
.-+.+..++.+.+.++--++
T Consensus 478 lPF~~vll~~~~sl~k~l~~ 497 (537)
T COG1292 478 LPFSLVLLVMMFSLIKDLKQ 497 (537)
T ss_pred ccHHHHHHHHHHHHHHHHHh
Confidence 33344555666666654433
No 116
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=70.71 E-value=1.3e+02 Score=30.75 Aligned_cols=57 Identities=18% Similarity=0.120 Sum_probs=40.7
Q ss_pred HHHHHHhhccchHH---HhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 008094 264 GATVVFFAYVGFDA---VANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYK 321 (578)
Q Consensus 264 ~~~~~~~~~~G~e~---~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~ 321 (578)
-+..++-+.+||-+ ....++.++| |||...--..+++.=+++-++...+.....+.+
T Consensus 292 FITIACGAiSGFHsLv~SgttsKql~~-E~d~r~VgYGaMl~Eg~lAli~~~a~~~~~~~~ 351 (376)
T PF02554_consen 292 FITIACGAISGFHSLVSSGTTSKQLDK-EKDARPVGYGAMLTEGFLALIWLAAAMAFFPGD 351 (376)
T ss_pred HHHHHhhhhcchhhhhcCCCcHhhHhc-ccccceeehhHHHHHHHHHHHHHHHHHHhcccc
Confidence 45668888999977 3456666666 678877778888888887777777666555443
No 117
>PTZ00206 amino acid transporter; Provisional
Probab=58.30 E-value=1.8e+02 Score=30.97 Aligned_cols=55 Identities=4% Similarity=-0.132 Sum_probs=43.7
Q ss_pred hHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhh
Q 008094 328 PLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFA 382 (578)
Q Consensus 328 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~ 382 (578)
.+.++.+...+++...++.+..++..++.+.+++...+..+...-++...|+++.
T Consensus 122 sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~ 176 (467)
T PTZ00206 122 TYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK 176 (467)
T ss_pred CHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 4777778877888899999999999999999999988888877665544555554
No 118
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=55.07 E-value=2.3e+02 Score=31.49 Aligned_cols=55 Identities=9% Similarity=0.065 Sum_probs=38.6
Q ss_pred HHHHHHhhccchHHHhhhhhhhcCCC--CChhHHHHHHHHHHHHHHHHHHHHHhccc
Q 008094 264 GATVVFFAYVGFDAVANSAEESKKPQ--RDLPIGILGSLLICAALYVGVSLVLTGMV 318 (578)
Q Consensus 264 ~~~~~~~~~~G~e~~~~~~~E~k~P~--k~ip~a~~~s~~~~~i~y~~~~~~~~~~~ 318 (578)
.+....+.+...+.+..+..|.|--. |.-||.+..+.++.+++-.+++..+....
T Consensus 436 ~l~~~~~~~~~~~qa~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~ 492 (624)
T PF03169_consen 436 NLLFGGYGYAAASQAGDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLL 492 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777888888999999988653 56677777777777776666666555443
No 119
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=51.95 E-value=17 Score=28.14 Aligned_cols=33 Identities=15% Similarity=0.265 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCccccc
Q 008094 482 ILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPG 514 (578)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 514 (578)
...+.++++.+++.|+...++|++..|+...|.
T Consensus 37 ~lvI~~iFil~VilwfvCC~kRkrsRrPIYrPv 69 (94)
T PF05393_consen 37 FLVICGIFILLVILWFVCCKKRKRSRRPIYRPV 69 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCccccc
Confidence 345556667777888888777777766666664
No 120
>PF14256 YwiC: YwiC-like protein
Probab=51.54 E-value=1.5e+02 Score=25.25 Aligned_cols=45 Identities=16% Similarity=-0.000 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhhheecC
Q 008094 396 VWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKD 440 (578)
Q Consensus 396 l~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~ 440 (578)
+.+.++..+.......++.-.....+.+..|....-....+|.|+
T Consensus 8 W~Ml~~P~l~G~~~~~~w~~~~L~~aw~~~yl~~~p~~~~~k~r~ 52 (129)
T PF14256_consen 8 WAMLLVPFLLGMAGGPSWAHLPLLLAWLFGYLAFYPFLLWLKQRR 52 (129)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444444444434444333445566667776666666666554
No 121
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=51.01 E-value=1.8e+02 Score=26.35 Aligned_cols=7 Identities=29% Similarity=0.302 Sum_probs=3.4
Q ss_pred CCCcchh
Q 008094 387 KRHTPVH 393 (578)
Q Consensus 387 r~~~P~~ 393 (578)
++.-|+.
T Consensus 89 kNtdp~l 95 (226)
T COG4858 89 KNTDPWL 95 (226)
T ss_pred cCCCceE
Confidence 4445554
No 122
>PRK10263 DNA translocase FtsK; Provisional
Probab=43.80 E-value=3.8e+02 Score=32.49 Aligned_cols=10 Identities=30% Similarity=0.534 Sum_probs=3.9
Q ss_pred HHHHhhcCCH
Q 008094 526 NLFLFAQLHY 535 (578)
Q Consensus 526 ~~~~~~~~~~ 535 (578)
++.++...++
T Consensus 174 GLiLlTglSw 183 (1355)
T PRK10263 174 GLTLFTGWSW 183 (1355)
T ss_pred HHHHHHhhHH
Confidence 3333334443
No 123
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=43.31 E-value=2.7e+02 Score=27.91 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008094 412 RVLSHILSVGTLTGYSV 428 (578)
Q Consensus 412 ~~l~~~~~~~~l~~y~~ 428 (578)
+.+..+.....++.|++
T Consensus 32 ~~~~~~~~~~~~~l~~~ 48 (330)
T PF03595_consen 32 AILSEVLFILALILFLV 48 (330)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33444333333344433
No 124
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=41.95 E-value=3.5e+02 Score=28.41 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHh
Q 008094 353 LTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAG 407 (578)
Q Consensus 353 ~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~ 407 (578)
.+++.....++.|+.+..+=-|+.-|+.|--.. +++++++.+++..
T Consensus 68 ~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g---------Lilsai~nil~Gf 113 (448)
T COG2271 68 ILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG---------LILSAIVNILFGF 113 (448)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCceeehHH---------HHHHHHHHHHHhh
Confidence 344555667889999998888877555443322 4555555544443
No 125
>PF14256 YwiC: YwiC-like protein
Probab=40.73 E-value=1.7e+02 Score=25.04 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=9.0
Q ss_pred HHhccCCCCCCCcccccc
Q 008094 498 LCLRHGYSDPPGFSCPGV 515 (578)
Q Consensus 498 ~~~~~~~~~~~~~~~p~~ 515 (578)
.+.|++++++++++.|..
T Consensus 46 ~~~k~r~~~~~~~~~~~~ 63 (129)
T PF14256_consen 46 LWLKQRRRRRPRYLKWAL 63 (129)
T ss_pred HHHhcccccchhHHHHHH
Confidence 344444444455666643
No 126
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=39.76 E-value=3.1e+02 Score=30.10 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=16.3
Q ss_pred cchhhhhHHHhchhhHHHHHHHHHHH
Q 008094 124 GGAYLYAYTAFNELTAFLVFAQLMLD 149 (578)
Q Consensus 124 GG~y~~~~~~~g~~~g~~~g~~~~l~ 149 (578)
...|.|.++-|++.........+.+.
T Consensus 108 ~~~~eYl~~Rf~~~~r~l~~l~f~l~ 133 (585)
T KOG2349|consen 108 TTMYEYLEKRFGGRVRYLATLSFILM 133 (585)
T ss_pred eehhHHHHHHhcccchhhHHHHHHHH
Confidence 45788888888887544444444433
No 127
>PF14007 YtpI: YtpI-like protein
Probab=37.99 E-value=37 Score=26.84 Aligned_cols=28 Identities=7% Similarity=-0.282 Sum_probs=19.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhhccccc
Q 008094 532 QLHYEAWWRFVILSFISIGLYAFYGQYHA 560 (578)
Q Consensus 532 ~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 560 (578)
..+..++++.++.+++|+.-.+ .|.|+.
T Consensus 54 ~~st~~~iV~~ifl~lG~~n~~-~G~r~y 81 (89)
T PF14007_consen 54 FGSTVRLIVGAIFLVLGLFNLF-AGIRAY 81 (89)
T ss_pred cccHHHHHHHHHHHHHhHHHHH-HHHHHH
Confidence 4567788888888888887655 554443
No 128
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=37.42 E-value=5.9e+02 Score=27.93 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--cCCCCCCCCC-----ChHHHHHHHHHHHh
Q 008094 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD--VSNWSPFAPN-----GFKEILTGATVVFF 270 (578)
Q Consensus 198 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~-----g~~~~~~~~~~~~~ 270 (578)
.+..+++.+++.+....|.|.++|+.-+.+.+-.+++.+..+-+.-..+ +....-..|+ ....+.-+...+++
T Consensus 255 ~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtqiff 334 (629)
T KOG3659|consen 255 ALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQIFF 334 (629)
T ss_pred HHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhheecccHHHHhhHHHHHHHHHHHHh
Confidence 3445555556667778999999997555555544444444444432111 1111111121 22345556666666
Q ss_pred hc-cchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 008094 271 AY-VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLV 313 (578)
Q Consensus 271 ~~-~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~ 313 (578)
+. .|+......+.-.|. +.|.=|=.+...++..+.+++..+.
T Consensus 335 slg~GfG~L~AfaSyn~F-~NNc~rDAll~S~in~~ts~~sgfv 377 (629)
T KOG3659|consen 335 SLGPGFGVLIAFASYNKF-HNNCYRDALLTSIINCLTSFLSGFV 377 (629)
T ss_pred hcCccchhhhhhhhhccc-ccchhhhhHHHHHHHHHHHHHHHHH
Confidence 65 477777777766554 3444443333333344444444433
No 129
>PF13687 DUF4153: Domain of unknown function (DUF4153)
Probab=37.34 E-value=3.5e+02 Score=25.31 Aligned_cols=11 Identities=27% Similarity=0.298 Sum_probs=4.6
Q ss_pred HHHHHHHHHHh
Q 008094 543 ILSFISIGLYA 553 (578)
Q Consensus 543 ~~~~~g~~~y~ 553 (578)
++..+..+.|.
T Consensus 165 ~~~~~~~l~~~ 175 (217)
T PF13687_consen 165 IFLLIYALYYI 175 (217)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 130
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=37.06 E-value=5.4e+02 Score=27.41 Aligned_cols=115 Identities=8% Similarity=0.015 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhh-HHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008094 94 VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYA-YTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELF 172 (578)
Q Consensus 94 ~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~-~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~ 172 (578)
-..+|..+..+ ..++.+|--+++-+ =..-++. .|.-.+..-.+++....+--.........+.+..+..+++.
T Consensus 79 Y~iG~~~Gy~i---~~fL~A~~LRk~Gk--yT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv- 152 (529)
T COG4147 79 YSIGWTGGYPI---LLFLIAEYLRKLGK--YTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGV- 152 (529)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHhcCC--cchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC-
Confidence 33444444433 45566777776665 2233333 34444555555555444433333334444455555555432
Q ss_pred ccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008094 173 PFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIV 236 (578)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~ 236 (578)
| .+. -+.+..++.......-|.|.+.+.|.+=.++.+...++
T Consensus 153 ~-------~~v---------------gv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i 194 (529)
T COG4147 153 P-------YHV---------------GVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALI 194 (529)
T ss_pred C-------cee---------------ehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHH
Confidence 1 111 13334444455555666777777665544444433333
No 131
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=35.91 E-value=23 Score=35.05 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCCcchhh
Q 008094 540 RFVILSFISIGLYAFYGQYHADPSSDTIVYH 570 (578)
Q Consensus 540 ~~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~ 570 (578)
..++++++.+++|+++++||+++..+..-|.
T Consensus 264 aIliIVLIMvIIYLILRYRRKKKmkKKlQYi 294 (299)
T PF02009_consen 264 AILIIVLIMVIIYLILRYRRKKKMKKKLQYI 294 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3445557788899999988877766544443
No 132
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=35.33 E-value=50 Score=30.48 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=23.6
Q ss_pred hhhhcCCC-CChhHHHHHHHHHHHHHHHHHHH
Q 008094 282 AEESKKPQ-RDLPIGILGSLLICAALYVGVSL 312 (578)
Q Consensus 282 ~~E~k~P~-k~ip~a~~~s~~~~~i~y~~~~~ 312 (578)
-|-.+||| |++||+++.+.+...++-++...
T Consensus 204 IEGfHDPKFKr~p~~vias~vaS~~~gii~v~ 235 (240)
T PRK00968 204 IEGFHDPKFKRWPRAVIASFVASLVCGIVAVL 235 (240)
T ss_pred eecCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 35567898 89999999998877776555444
No 133
>TIGR00816 tdt C4-dicarboxylate transporter/malic acid transport protein. spanners (TMSs).
Probab=34.99 E-value=4.8e+02 Score=26.11 Aligned_cols=12 Identities=8% Similarity=-0.061 Sum_probs=5.2
Q ss_pred cccccchHHHHH
Q 008094 511 SCPGVPLLPAVS 522 (578)
Q Consensus 511 ~~p~~p~~~~~~ 522 (578)
-....|+.+...
T Consensus 132 paw~lp~V~~~v 143 (320)
T TIGR00816 132 PGWYLPPVALIF 143 (320)
T ss_pred chhhhcccHHHH
Confidence 333344444433
No 134
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=34.49 E-value=5.1e+02 Score=26.30 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=26.6
Q ss_pred HHhhhhhhhcCCCCC----hhHHHHHHHHHHHHHHHHHHHHHh
Q 008094 277 AVANSAEESKKPQRD----LPIGILGSLLICAALYVGVSLVLT 315 (578)
Q Consensus 277 ~~~~~~~E~k~P~k~----ip~a~~~s~~~~~i~y~~~~~~~~ 315 (578)
.....++++.++++| .|+|+..+++.+...-++...+..
T Consensus 27 ~L~~~~~~ig~~~~D~~~~T~~al~~tll~alp~pl~~~~~g~ 69 (340)
T PF12794_consen 27 RLERIAKRIGKVRQDSFSHTPRALLLTLLLALPLPLLLLAIGY 69 (340)
T ss_pred HHHHHHHHcCCccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777666 899999988887766555444433
No 135
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=33.99 E-value=1.3e+02 Score=24.49 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=20.2
Q ss_pred CcccccChhHHHHHHhhhhhhhhHHHHHHHHHhh---hCcHHHHHHHHHHHH
Q 008094 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARD---AGPGVTISFLLAGAA 104 (578)
Q Consensus 56 ~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~---~G~~~~~~~ii~~l~ 104 (578)
+.-|.++....+...+...+-.|++ .|..+-. ++|...+.+++.++.
T Consensus 37 ~~~~~l~~~g~IG~~~v~pil~G~~--lG~WLD~~~~t~~~~tl~~lllGv~ 86 (100)
T TIGR02230 37 SIWEGLGMFGLIGWSVAIPTLLGVA--VGIWLDRHYPSPFSWTLTMLIVGVV 86 (100)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 3445555555544443333223333 3444422 345444445555544
No 136
>PHA02898 virion envelope protein; Provisional
Probab=33.95 E-value=94 Score=24.28 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhhhccccc
Q 008094 540 RFVILSFISIGLYAFYGQYHA 560 (578)
Q Consensus 540 ~~~~~~~~g~~~y~~~~~~~~ 560 (578)
+.+.++.+|+++|--|+++=+
T Consensus 53 Ilgivl~lG~~ifs~y~r~C~ 73 (92)
T PHA02898 53 ILAIILILGIIFFKGYNMFCG 73 (92)
T ss_pred HHHHHHHHHHHHHHHHhhhcC
Confidence 445567888888887775443
No 137
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=33.44 E-value=71 Score=23.56 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhhcccccCC
Q 008094 539 WRFVILSFISIGLYAFYGQYHADP 562 (578)
Q Consensus 539 ~~~~~~~~~g~~~y~~~~~~~~~~ 562 (578)
...+.+.++|+++|..|.+++..+
T Consensus 7 Li~ICVaii~lIlY~iYnr~~~~q 30 (68)
T PF05961_consen 7 LIIICVAIIGLILYGIYNRKKTTQ 30 (68)
T ss_pred HHHHHHHHHHHHHHHHHhcccccC
Confidence 345566788999999888776543
No 138
>PHA03049 IMV membrane protein; Provisional
Probab=33.19 E-value=74 Score=23.33 Aligned_cols=24 Identities=13% Similarity=0.337 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhhcccccCC
Q 008094 539 WRFVILSFISIGLYAFYGQYHADP 562 (578)
Q Consensus 539 ~~~~~~~~~g~~~y~~~~~~~~~~ 562 (578)
...+.+.++|++.|.+|.+++..+
T Consensus 7 l~iICVaIi~lIvYgiYnkk~~~q 30 (68)
T PHA03049 7 LVIICVVIIGLIVYGIYNKKTTTS 30 (68)
T ss_pred HHHHHHHHHHHHHHHHHhcccccC
Confidence 345566788999999888776544
No 139
>PRK10249 phenylalanine transporter; Provisional
Probab=32.95 E-value=4.2e+02 Score=28.12 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=21.4
Q ss_pred CCCCccccccchHHHHHHHHHHHHhh
Q 008094 506 DPPGFSCPGVPLLPAVSIFFNLFLFA 531 (578)
Q Consensus 506 ~~~~~~~p~~p~~~~~~~~~~~~~~~ 531 (578)
.+++||.|..|+.+.++++.+.+.+.
T Consensus 401 ~~~p~~~~~~p~~~~~~l~~~~~~~v 426 (458)
T PRK10249 401 RETQFKALLYPFGNYLCIAFLGMILL 426 (458)
T ss_pred CCCCccCCCccHHHHHHHHHHHHHHH
Confidence 46789999999999998888777643
No 140
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=32.60 E-value=4e+02 Score=24.59 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCC
Q 008094 483 LLIVAVVIAVLASAMLCLRHGYSDP 507 (578)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (578)
....+.+++..+.+..+.|+|+-++
T Consensus 119 ~~yL~~v~laVl~fr~~Fr~ky~Rd 143 (206)
T PF09874_consen 119 YTYLGFVFLAVLAFRYYFRSKYGRD 143 (206)
T ss_pred HHHHHHHHHHHHHHhhheeeeeccc
Confidence 3444444445556666666666543
No 141
>COG3872 Predicted metal-dependent enzyme [General function prediction only]
Probab=31.72 E-value=2.9e+02 Score=26.61 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=22.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 008094 289 QRDLPIGILGSLLICAALYVGVSLVLTGMVPY 320 (578)
Q Consensus 289 ~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~ 320 (578)
+|.-.+++..++..++++-++....+...+|.
T Consensus 98 EK~~~~a~~l~la~igvlsf~f~~~vF~lvPv 129 (318)
T COG3872 98 EKKSKLAMILGLAVIGVLSFVFGKFVFTLVPV 129 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhheehHH
Confidence 44567889999888888777766666666654
No 142
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=31.68 E-value=1.6e+02 Score=23.32 Aligned_cols=32 Identities=28% Similarity=0.497 Sum_probs=23.8
Q ss_pred CCCcccccChhHHHHHHhhhhhhhhHHHHHHH
Q 008094 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGT 85 (578)
Q Consensus 54 ~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~ 85 (578)
+++.--.+|++|+..++.+..++.+.+.....
T Consensus 10 e~ki~~GlT~RQl~~l~~~~~~~~~~~~~~~~ 41 (93)
T PF12666_consen 10 EEKIFFGLTLRQLICLAIGALVGVGVYLLLWF 41 (93)
T ss_pred cchhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455678999999999998888776665543
No 143
>PRK10746 putative transport protein YifK; Provisional
Probab=30.76 E-value=5.5e+02 Score=27.24 Aligned_cols=36 Identities=25% Similarity=0.215 Sum_probs=20.8
Q ss_pred HHHhccCCCCCCCccccc-cchHHHHHHHHHHHHhhcC
Q 008094 497 MLCLRHGYSDPPGFSCPG-VPLLPAVSIFFNLFLFAQL 533 (578)
Q Consensus 497 ~~~~~~~~~~~~~~~~p~-~p~~~~~~~~~~~~~~~~~ 533 (578)
.+..||+++++. -+.|. .|+.|....+..++....+
T Consensus 382 ~i~~r~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~ 418 (461)
T PRK10746 382 QLRFRRAHKAAI-ASHPFRSILFPWANYLTMAFLICVL 418 (461)
T ss_pred HHHHHHhccccc-cCCCCcCCCccHHHHHHHHHHHHHH
Confidence 445566665432 23443 5788888777666654443
No 144
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=30.42 E-value=72 Score=22.20 Aligned_cols=21 Identities=14% Similarity=0.468 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhh---hcccccCCC
Q 008094 543 ILSFISIGLYAF---YGQYHADPS 563 (578)
Q Consensus 543 ~~~~~g~~~y~~---~~~~~~~~~ 563 (578)
+..++|+.+.-. |++||...+
T Consensus 12 v~~lLg~~I~~~~K~ygYkht~d~ 35 (50)
T PF12606_consen 12 VMGLLGLSICTTLKAYGYKHTVDP 35 (50)
T ss_pred HHHHHHHHHHHHhhccccccccCC
Confidence 334455555443 444444444
No 145
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=29.61 E-value=6.7e+02 Score=26.21 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=16.9
Q ss_pred HHHhccCCCCCCCccccccch---HHHHHHHHHHHH
Q 008094 497 MLCLRHGYSDPPGFSCPGVPL---LPAVSIFFNLFL 529 (578)
Q Consensus 497 ~~~~~~~~~~~~~~~~p~~p~---~~~~~~~~~~~~ 529 (578)
...+|++++.+++++.|..+. ++.+....+.+.
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (466)
T COG0531 384 LVLRRKKPDLKRPFRLPLAPLIPILGIVAVLLLLYA 419 (466)
T ss_pred HHHhhcCCCCCCcccccccchHHHHHHHHHHHHHHH
Confidence 334444444567777777554 444444444443
No 146
>PHA03048 IMV membrane protein; Provisional
Probab=29.59 E-value=1.7e+02 Score=22.96 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhhccccc
Q 008094 540 RFVILSFISIGLYAFYGQYHA 560 (578)
Q Consensus 540 ~~~~~~~~g~~~y~~~~~~~~ 560 (578)
+.+.++.+|+++|--|+++-+
T Consensus 52 Ilgivl~lG~~ifsmy~r~C~ 72 (93)
T PHA03048 52 VLGIVMTIGMLIYSMWGRYCT 72 (93)
T ss_pred HHHHHHHHHHHHHHHHhcccC
Confidence 445667899999988875544
No 147
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=29.52 E-value=3.7e+02 Score=28.59 Aligned_cols=31 Identities=6% Similarity=-0.174 Sum_probs=17.0
Q ss_pred CCCCCCCccccchhhhhhHHHHHHHHHhhhh
Q 008094 440 DRTSRNDSSRLTSAWRQGVICLIIIACCGFG 470 (578)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (578)
+++.+||++.+..++.+.+..+..+......
T Consensus 398 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 428 (478)
T TIGR00913 398 RSLDELPYKSQTGPYGSYYALFFNILILIAQ 428 (478)
T ss_pred CCcccCCccCCCcchHHHHHHHHHHHHHHHH
Confidence 4555677766666666555544444444333
No 148
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=28.55 E-value=6.3e+02 Score=25.54 Aligned_cols=68 Identities=12% Similarity=0.013 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 298 GSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 368 (578)
Q Consensus 298 ~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 368 (578)
.++++.++++.+.....+-..-.-+. ....+..+...++...-+..+..+..++++......+++-.+
T Consensus 40 ~gIivs~vlf~~~g~vim~ig~~f~a---~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~ 107 (349)
T COG3949 40 LGIILSTVLFTLSGAVIMTIGKKFNA---TSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLL 107 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc---cchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 45566666666655554433222221 124556677777777777777777777777766554444333
No 149
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=27.62 E-value=66 Score=27.17 Aligned_cols=18 Identities=17% Similarity=0.025 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhccCCC
Q 008094 488 VVIAVLASAMLCLRHGYS 505 (578)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~ 505 (578)
++.+.++++++++|++++
T Consensus 77 vIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 77 VIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 333334444444444444
No 150
>PRK10580 proY putative proline-specific permease; Provisional
Probab=27.44 E-value=4.2e+02 Score=28.00 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhccCC
Q 008094 484 LIVAVVIAVLASAMLCLRHGY 504 (578)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~ 504 (578)
+....++...+.+..++|+++
T Consensus 431 ~~~~~~~~~~~~y~~~~~~~~ 451 (457)
T PRK10580 431 VGFAWIVLLLIGWMFKRRHDR 451 (457)
T ss_pred HHHHHHHHHHHHHHHHhcccC
Confidence 333444444445555444333
No 151
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=27.34 E-value=77 Score=28.16 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=22.9
Q ss_pred hhhcCCC-CChhHHHHHHHHHHHHHHHHHHHH
Q 008094 283 EESKKPQ-RDLPIGILGSLLICAALYVGVSLV 313 (578)
Q Consensus 283 ~E~k~P~-k~ip~a~~~s~~~~~i~y~~~~~~ 313 (578)
|..+||| |.+||+.+.+.+...+.-++..+.
T Consensus 195 EGfHDPKfkk~pk~vias~vasil~~iia~l~ 226 (230)
T COG4060 195 EGFHDPKFKKLPKAVIASLVASILAGIIAVLL 226 (230)
T ss_pred ecccChhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 4567897 899999999988776665554443
No 152
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=26.88 E-value=2.1e+02 Score=25.14 Aligned_cols=37 Identities=11% Similarity=0.234 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHHh
Q 008094 517 LLPAVSIFFNLFLFAQL-HYEAWWRFVILSFISIGLYA 553 (578)
Q Consensus 517 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~y~ 553 (578)
++|.+........+... .-.+|.-.+.-.++|.++-+
T Consensus 35 IlPplfmstG~lmf~~P~~~~~~~~~l~A~~~G~lFs~ 72 (148)
T PF07301_consen 35 ILPPLFMSTGFLMFVFPFFRPPWLEVLEAFLVGALFSY 72 (148)
T ss_pred HHhHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHH
Confidence 55555544444443322 11244444444566666533
No 153
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=26.17 E-value=6.4e+02 Score=24.83 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCcccccc
Q 008094 482 ILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGV 515 (578)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 515 (578)
..+....+..+.......+|++.+.+++|..+.-
T Consensus 89 i~~~l~~~t~~~~~~a~~rr~~~~~~~r~~~~~~ 122 (287)
T PF07760_consen 89 ILISLSIFTLVLSIIAYIRRRRLPEEERFSVPFD 122 (287)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCccccccccch
Confidence 3344444444455555666666666666666653
No 154
>PRK10836 lysine transporter; Provisional
Probab=26.03 E-value=7.4e+02 Score=26.44 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=16.3
Q ss_pred ccc-ccchHHHHHHHHHHHHhhcCC
Q 008094 511 SCP-GVPLLPAVSIFFNLFLFAQLH 534 (578)
Q Consensus 511 ~~p-~~p~~~~~~~~~~~~~~~~~~ 534 (578)
+.| ..|.-|....+..+.....+-
T Consensus 409 ~~p~~~p~~p~~~~~~~~~~~~~~~ 433 (489)
T PRK10836 409 DLPYRSGFFPLGPIFAFVLCLIITL 433 (489)
T ss_pred CCCCcCCCccHHHHHHHHHHHHHHH
Confidence 345 478899988877777655443
No 155
>KOG2736 consensus Presenilin [Signal transduction mechanisms]
Probab=25.64 E-value=2.3e+02 Score=28.84 Aligned_cols=9 Identities=11% Similarity=0.394 Sum_probs=4.0
Q ss_pred cchhhhhHH
Q 008094 124 GGAYLYAYT 132 (578)
Q Consensus 124 GG~y~~~~~ 132 (578)
|-.++|.++
T Consensus 381 G~iFYF~t~ 389 (406)
T KOG2736|consen 381 GLIFYFSTR 389 (406)
T ss_pred HHHHHHHHH
Confidence 444444444
No 156
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=24.09 E-value=2.9e+02 Score=24.38 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=37.5
Q ss_pred hHHHHHHhhhhhhhhHHHHHHHHHhhhCc--HHHHHHHHH--HHHHHHHHHHHHHHhhcCCCC-ccchhhh
Q 008094 64 FELVLIGVGASVGAGIFVVTGTVARDAGP--GVTISFLLA--GAASVLNALCYAELASRFPAV-VGGAYLY 129 (578)
Q Consensus 64 ~~~~~~~i~~~ig~g~~~~~~~~~~~~G~--~~~~~~ii~--~l~~~~~a~~~ael~~~~P~~-~GG~y~~ 129 (578)
+-+++.++=...|.+.|............ ..+..++.. .+..-+..++|+-|++.+-.+ .|+...|
T Consensus 64 Rm~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gllGisYGilSaSWD~~r~GSllG~ 134 (153)
T PF11947_consen 64 RMAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGLLGISYGILSASWDPEREGSLLGW 134 (153)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCcccH
Confidence 33444444456677777777766654432 122223333 333455778899999887653 5666544
No 157
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=23.94 E-value=1.1e+02 Score=29.83 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCC
Q 008094 482 ILLIVAVVIAVLASAMLCLRHGY 504 (578)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~ 504 (578)
.++++..++++++..|+++||++
T Consensus 266 lvllil~vvliiLYiWlyrrRK~ 288 (295)
T TIGR01478 266 LVLIILTVVLIILYIWLYRRRKK 288 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333333333333444444443
No 158
>COG4146 Predicted symporter [General function prediction only]
Probab=23.72 E-value=8.2e+02 Score=25.21 Aligned_cols=47 Identities=17% Similarity=0.141 Sum_probs=35.6
Q ss_pred hhhhhHHHhchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Q 008094 126 AYLYAYTAFNELTAFLVFAQLMLDYHI-GAASIARSLASYVVSILELF 172 (578)
Q Consensus 126 ~y~~~~~~~g~~~g~~~g~~~~l~~~~-~~a~~~~~~~~~~~~~~~~~ 172 (578)
.-++.++-|.+....+...++.++|.. ..+...++.+..++++++.-
T Consensus 105 IPdFlE~RfD~~TR~Iis~lFLi~y~~~flPtvLYsGAla~nsiF~l~ 152 (571)
T COG4146 105 IPDFLEERFDKTTRMIISFLFLIAYGVCFLPTVLYSGALALNSIFHLG 152 (571)
T ss_pred chHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHhhhhchH
Confidence 455888888888888888888888743 46677777778888887653
No 159
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=23.06 E-value=3.5e+02 Score=20.69 Aligned_cols=42 Identities=19% Similarity=0.098 Sum_probs=32.4
Q ss_pred HHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhcc
Q 008094 276 DAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGM 317 (578)
Q Consensus 276 e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~ 317 (578)
|.-..+-+|++.|=|.+.+-...+......+-.++...-...
T Consensus 4 ~~~~rLraE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~rl~a 45 (75)
T PF11998_consen 4 EQYARLRAEAQAPFRGLRRFFYGAFGASAGIGLFIFLFRLIA 45 (75)
T ss_pred HHHHHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444667789999999999999999888888776666654443
No 160
>PF15050 SCIMP: SCIMP protein
Probab=22.16 E-value=87 Score=26.00 Aligned_cols=23 Identities=9% Similarity=0.079 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHhhhcccccCC
Q 008094 540 RFVILSFISIGLYAFYGQYHADP 562 (578)
Q Consensus 540 ~~~~~~~~g~~~y~~~~~~~~~~ 562 (578)
+..+-+++|+++|...+++.++.
T Consensus 16 II~vS~~lglIlyCvcR~~lRqG 38 (133)
T PF15050_consen 16 IILVSVVLGLILYCVCRWQLRQG 38 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 44556688999998776554433
No 161
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=21.52 E-value=2.6e+02 Score=22.07 Aligned_cols=20 Identities=25% Similarity=0.595 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhhcccc
Q 008094 540 RFVILSFISIGLYAFYGQYH 559 (578)
Q Consensus 540 ~~~~~~~~g~~~y~~~~~~~ 559 (578)
+++.++.+|+++|--|+++=
T Consensus 53 I~giil~lG~~i~s~ygr~C 72 (92)
T PF05767_consen 53 ILGIILTLGIVIFSMYGRYC 72 (92)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 44566788999988786554
No 162
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.83 E-value=83 Score=26.59 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhhhccccc
Q 008094 542 VILSFISIGLYAFYGQYHA 560 (578)
Q Consensus 542 ~~~~~~g~~~y~~~~~~~~ 560 (578)
+++..+.++.|++.+++||
T Consensus 76 GvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 76 GVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3333444555554444433
No 163
>KOG3814 consensus Signaling protein van gogh/strabismus [Signal transduction mechanisms]
Probab=20.39 E-value=4.9e+02 Score=26.63 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCC-CCCcc
Q 008094 483 LLIVAVVIAVLASAMLCLRHGYSD-PPGFS 511 (578)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 511 (578)
.+..=++++++..|.+.+||...+ ||-|-
T Consensus 160 smA~kll~L~ig~walf~Rk~~A~mPRvf~ 189 (531)
T KOG3814|consen 160 SMAFKLLILLIGIWALFFRKAMADMPRVFV 189 (531)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCchhHH
Confidence 344556666777788888877765 55443
No 164
>TIGR00947 2A73 probable bicarbonate transporter, IctB family. This family of proteins is suggested to transport inorganic carbon (HCO3-), based on the phenotype of a mutant of IctB in Synechococcus sp. strain PCC 7942. Bicarbonate uptake is used by many photosynthetic organisms including cyanobacteria. These organisms are able to concentrate CO2/HCO3- against a greater than ten-fold concentration gradient. Cyanobacteria may have several such carriers operating with different efficiencies. Note that homology to various O-antigen ligases, with possible implications for mutant cell envelope structure, might allow alternatives to the interpretation of IctB as a bicarbonate transport protein.
Probab=20.33 E-value=1e+03 Score=24.99 Aligned_cols=43 Identities=26% Similarity=0.129 Sum_probs=18.8
Q ss_pred CcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Q 008094 389 HTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSA 431 (578)
Q Consensus 389 ~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y~~~~~ 431 (578)
-+|....++......++....+.+.-.+..+...+..|.....
T Consensus 65 ~~~~~~~~llf~~~~~ls~~~S~~~~~a~~~l~~~~~yl~~f~ 107 (425)
T TIGR00947 65 LTPIHLLVLLYWGIAALATGLSPVPAAALKGLLKLTLYLLVFA 107 (425)
T ss_pred CCchHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH
Confidence 4455544444333333444444443333444444444554443
Done!