Query 008094
Match_columns 578
No_of_seqs 223 out of 3031
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 17:59:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 9.7E-52 3.3E-56 437.8 43.8 420 55-563 4-435 (445)
2 3gia_A Uncharacterized protein 100.0 5.6E-50 1.9E-54 424.1 40.5 364 56-441 3-370 (444)
3 4djk_A Probable glutamate/gamm 100.0 2E-45 6.7E-50 396.3 38.1 378 53-453 5-409 (511)
4 2jln_A MHP1; hydantoin, transp 99.1 2.3E-07 7.9E-12 98.2 34.2 283 58-371 24-329 (501)
5 2xq2_A Sodium/glucose cotransp 98.5 0.00048 1.6E-08 74.3 34.1 282 58-368 48-377 (593)
6 3dh4_A Sodium/glucose cotransp 98.3 0.0011 3.7E-08 70.6 31.8 109 58-169 19-129 (530)
7 2a65_A Leutaa, Na(+):neurotran 97.3 0.21 7.3E-06 52.2 32.4 242 62-308 10-291 (519)
8 4ain_A Glycine betaine transpo 85.6 37 0.0013 35.2 22.0 25 58-82 93-117 (539)
9 2ks1_B Epidermal growth factor 58.7 11 0.00038 24.4 3.5 18 490-507 26-43 (44)
10 2l2t_A Receptor tyrosine-prote 57.9 12 0.00039 24.3 3.5 18 491-508 26-43 (44)
11 2wsw_A BCCT family betaine/car 46.2 2.6E+02 0.009 28.7 34.4 25 58-82 88-112 (509)
12 2jwa_A Receptor tyrosine-prote 37.7 31 0.0011 22.3 3.0 12 495-506 31-42 (44)
13 2i68_A Protein EMRE; transmemb 25.7 74 0.0025 26.3 4.4 14 517-530 66-79 (137)
14 4djk_A Probable glutamate/gamm 24.2 5.5E+02 0.019 25.7 19.9 19 484-502 449-467 (511)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=9.7e-52 Score=437.76 Aligned_cols=420 Identities=21% Similarity=0.332 Sum_probs=356.0
Q ss_pred CCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHh
Q 008094 55 EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (578)
Q Consensus 55 ~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~ 134 (578)
++.||+++.+++.++.++.++|+|+|..++. ...+||..+++|+++++++++.+++++|+++++|+ +||.|+|+++.+
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~-~~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~ 81 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPAN-LASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPS-PGGSYAYARRCF 81 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHH-HHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-TTTHHHHHHHHS
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCchhhHHhHc
Confidence 3467899999999999999999999999887 44578888999999999999999999999999999 999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHh
Q 008094 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (578)
Q Consensus 135 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (578)
||..|+..||.+++++....+..+...++++..++ |... .+....+++++++++...+|++
T Consensus 82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------------~~~~~~~~~~~~~~~~~~in~~ 142 (445)
T 3l1l_A 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFF---PILK----------------DPWVLTITCVVVLWIFVLLNIV 142 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC---GGGG----------------SHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---cccc----------------ccHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999888888888877765432 2110 1123446788888999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC-CCCCCC---hHHHHHHHHHHHhhccchHHHhhhhhhhcCCCC
Q 008094 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS-PFAPNG---FKEILTGATVVFFAYVGFDAVANSAEESKKPQR 290 (578)
Q Consensus 215 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~g---~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k 290 (578)
|+|..++++.+.+.++++.++++++.+....+.+++. ++.+.+ +.++..++...+|+|.|+|.+++++||+|||+|
T Consensus 143 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r 222 (445)
T 3l1l_A 143 GPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR 222 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccc
Confidence 9999999999999999999888888877665554442 333433 557888999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 291 DLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYL 369 (578)
Q Consensus 291 ~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 369 (578)
++|||++.+..+++++|++..+......|++++. .++|+.+++++.++++...++.+..+++.+++.++.+++.+|+++
T Consensus 223 ~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~ 302 (445)
T 3l1l_A 223 NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAK 302 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887764 567999999999888888899999999999999999999999999
Q ss_pred HHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc-------CHHHHHHHHHHHHHHHHHHHHHHHhhheecCCC
Q 008094 370 GLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRT 442 (578)
Q Consensus 370 ~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~-------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~ 442 (578)
+|||||.+|++|+|+| |+++|+++++++.+++.++.+.. .++.+.++.+++.++.|.+.+++.+++|+|+|
T Consensus 303 ~~a~dg~lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~- 380 (445)
T 3l1l_A 303 AAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF- 380 (445)
T ss_dssp HHHHTTSSCGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-
T ss_pred HHHhCCCCcHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-
Confidence 9999999999999999 67999999999998777665432 35789999999999999999999999987765
Q ss_pred CCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchHHHHH
Q 008094 443 SRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVS 522 (578)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~ 522 (578)
+ .|.|..|+++.++
T Consensus 381 ~------------------------------------------------------------------~r~~~~~~~~~~~ 394 (445)
T 3l1l_A 381 G------------------------------------------------------------------KARPAYLAVTTIA 394 (445)
T ss_dssp G------------------------------------------------------------------GGCTTTHHHHHHH
T ss_pred c------------------------------------------------------------------cccchhHHHHHHH
Confidence 2 1224557889999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 008094 523 IFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADPS 563 (578)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 563 (578)
.+.+++.+...++.++....+++++|+.+|++++++++++.
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 435 (445)
T 3l1l_A 395 FLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNP 435 (445)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTCCCS
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcccCc
Confidence 99999998888999999999999999999997776655443
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=5.6e-50 Score=424.09 Aligned_cols=364 Identities=25% Similarity=0.374 Sum_probs=323.8
Q ss_pred CcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhc
Q 008094 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (578)
Q Consensus 56 ~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g 135 (578)
+.||+++.+++.+++++.++|+|++..++.....+||+.+++|++++++.++.+++++|+++++|+ +||.|+|+++.+|
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~-~Gg~y~~~~~~~G 81 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVS-NAGPIAFIHKAIG 81 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCC-TTTHHHHHHHHHC
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCcHHHhHHHHhC
Confidence 357899999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHh
Q 008094 136 EL-TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (578)
Q Consensus 136 ~~-~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (578)
|. .+...+|.+|++|....+..+..+++++..+++. ..+ +....+++.++++++..+|++
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~-------------~~~~~~~~~~~~~~~~~in~~ 142 (444)
T 3gia_A 82 DNIITGALSILLWMSYVISIALFAKGFAGYFLPLINA------PIN-------------TFNIAITEIGIVAFFTALNFF 142 (444)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------CCC-------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCc-------------hHHHHHHHHHHHHHHHHHHHH
Confidence 96 3445589999999999999999999998876431 111 112335778888999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCC-CCCCChHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCChh
Q 008094 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP-FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLP 293 (578)
Q Consensus 215 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip 293 (578)
|+|..++++.+.+.++++.++++++.++...+.+++.+ +.++++.+++.+....+|+|.|+|.+++++||+|||+|++|
T Consensus 143 g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip 222 (444)
T 3gia_A 143 GSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVP 222 (444)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchh
Confidence 99999999999999999999988888887767777765 45567778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccC--CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 294 IGILGSLLICAALYVGVSLVLTGMVPYKFLD--EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 371 (578)
Q Consensus 294 ~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 371 (578)
||+..+..++.++|++..+......|++++. ++.|+.++.+...+++...++.+..+++.+++.++.+++.||++++|
T Consensus 223 ~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~ 302 (444)
T 3gia_A 223 RAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSL 302 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988887663 34678888888877888888999999999999999999999999999
Q ss_pred hhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhhheecCC
Q 008094 372 GRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDR 441 (578)
Q Consensus 372 a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~ 441 (578)
||||.+|++|+|+| | ++|.++++++.+++.++..+.+++.+.++.+.+.++.|.+.+++.+++|++++
T Consensus 303 a~dg~lP~~f~~~~-~-~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~ 370 (444)
T 3gia_A 303 AKDGELPEFFERKV-W-FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVG 370 (444)
T ss_dssp HHHSSCCSSCCTTS-C-CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HHCCCCCHHHhCCC-C-CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 99999999999998 4 45999999999998888888899999999999999999999999998887764
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=2e-45 Score=396.31 Aligned_cols=378 Identities=19% Similarity=0.237 Sum_probs=285.4
Q ss_pred CCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHH-HHHHHHHHHHhh--cCCCCccchhhh
Q 008094 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAAS-VLNALCYAELAS--RFPAVVGGAYLY 129 (578)
Q Consensus 53 ~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~-~~~a~~~ael~~--~~P~~~GG~y~~ 129 (578)
+++++||+++.+++++++++.++| ++..+. ...+|+..++.+++++++. ++.+++++|+++ ++| +||.|+|
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P--~GG~y~~ 78 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMA--VYEYPT--FATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE--EGGVFAW 78 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCC--GGGHHH--HHTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC-----CHHHH
T ss_pred ccCccCccccHHHHHHHHHHHHHh--hchhHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC--CCChhhh
Confidence 456788999999999999999986 444443 3568887777777777774 579999999999 999 6999999
Q ss_pred hHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHH
Q 008094 130 AYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (578)
Q Consensus 130 ~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (578)
+++.+||..|+.+||.+|+++....+......+.++..+++ .|.+. .......+++++++++++
T Consensus 79 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~---------------~~~~~~~~~~~~~~~~~~ 142 (511)
T 4djk_A 79 VSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK-WPALN---------------EDPITKTIAALIILWALA 142 (511)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT-CGGGT---------------SCSSHHHHHHHHHHHHHH
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Ccccc---------------cCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888877777754321 12111 111234467888889999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHH-HHHHHhhhhccc---cc----CCCCCCCCCC-hHHHHHHHHHHHhhccchHHHhh
Q 008094 210 IVLCWGVGESSVLNSCMTVVKVII-VIVVIFAGAFEV---DV----SNWSPFAPNG-FKEILTGATVVFFAYVGFDAVAN 280 (578)
Q Consensus 210 ~i~~~g~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~---~~----~~~~~~~~~g-~~~~~~~~~~~~~~~~G~e~~~~ 280 (578)
.+|++|+|..++++.+.+.++++. ++++++.+.... +. .+++++.|+. ..+.+.++...+|+|.|+|.+++
T Consensus 143 ~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~ 222 (511)
T 4djk_A 143 LTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASAT 222 (511)
T ss_dssp HHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTG
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999988775443 444444443221 11 1223333321 11233456678999999999999
Q ss_pred hhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHH----HHcC--hhHHHHHHHHHHHHHHH
Q 008094 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAF----ASRG--LKYVSVLISFGAVAGLT 354 (578)
Q Consensus 281 ~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~--~~~~~~~~~~~~~~~~~ 354 (578)
++||+|||+|++|||++.+..++.++|++..++...+.|+++...+++..+.+ +..+ .++...++.+..+++.+
T Consensus 223 ~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 302 (511)
T 4djk_A 223 HVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVL 302 (511)
T ss_dssp GGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHH
T ss_pred HHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988876555544433 3345 57788888899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHH-HHhhcC--------HHHHHHHHHHHHHHH
Q 008094 355 TTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGI-LAGLFN--------VRVLSHILSVGTLTG 425 (578)
Q Consensus 355 ~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i-~~~~~~--------~~~l~~~~~~~~l~~ 425 (578)
++.++.+++.||++++|||||.+|++|+|+| |+++|++|++++.++..+ +..+.+ ++.+.++.+++.++.
T Consensus 303 ~~~~~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~ 381 (511)
T 4djk_A 303 AEIASWIVGPSRGMYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCA 381 (511)
T ss_dssp HHHHHHTTHHHHHTCHHHHGGGCSSSCCCCC-SSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCcccHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 579999999988544333 233334 578888899999999
Q ss_pred HHHHHHHHhhheecCCCCCCCccccchh
Q 008094 426 YSVVSACVIALRWKDRTSRNDSSRLTSA 453 (578)
Q Consensus 426 y~~~~~~~~~~r~~~~~~~~~~~~~~~~ 453 (578)
|.+.+++.+++|+|+++.+||++.+.++
T Consensus 382 y~~~~~~~~~~r~~~~~~~~~~~~~~~~ 409 (511)
T 4djk_A 382 YFMLFIGYIVLVLKHPDLKRTFNIPGGK 409 (511)
T ss_dssp HHHHHHHHHHHHHHCCSCCCSCCCSSTT
T ss_pred HHHHHHHHHHHHHhCCCCCCCeecCCCc
Confidence 9999999999998887776665444333
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.10 E-value=2.3e-07 Score=98.22 Aligned_cols=283 Identities=13% Similarity=0.034 Sum_probs=151.3
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchh-hhhHHH
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG---VTISFLLAGAASVLNALCYAELASRFPAVVGGAY-LYAYTA 133 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~---~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y-~~~~~~ 133 (578)
+|+.++++.+.+-++..+..+-+...+.... |-. ++++.+++.++..... +-++..-|+ .|-.+ ...+..
T Consensus 24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~--GLs~~~a~lai~lG~li~~~~~---~l~~~~G~~-~Gl~~~v~~R~~ 97 (501)
T 2jln_A 24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQMTS--SFQVWQVIVAIAAGCTIAVILL---FFTQSAAIR-WGINFTVAARMP 97 (501)
T ss_dssp GCCBCHHHHHHHHHHHHCSTHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHHH---HHHTHHHHH-HCCCHHHHTTTT
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHHH---HHHhHHHhh-cCCChhhhhHhh
Confidence 5778999999888887776665555444433 432 5555555555444333 444444444 44444 466777
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHH
Q 008094 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELF-PFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (578)
Q Consensus 134 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (578)
||+..+.+......+..+...+......++.+..+++.. +. .+.+ +..+++.++...+.
T Consensus 98 FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~----~~~~----------------v~~~i~~~l~~~~~ 157 (501)
T 2jln_A 98 FGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGF----TNLP----------------LWIVIFGAIQVVTT 157 (501)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCHH----------------HHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----chHH----------------HHHHHHHHHHHHHH
Confidence 999988888877777766666666666667666654311 10 0011 23444555666777
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--CCCCCCCC-CChHHHHHHHHH-HHhhccchHHHhhhhhhhcCC
Q 008094 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDV--SNWSPFAP-NGFKEILTGATV-VFFAYVGFDAVANSAEESKKP 288 (578)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~-~g~~~~~~~~~~-~~~~~~G~e~~~~~~~E~k~P 288 (578)
..|.|...+++.+...+.++..+.+.+..+...+. +......+ ....+++.++.. ..+...+.-..+.++.+.|++
T Consensus 158 ~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~ 237 (501)
T 2jln_A 158 FYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVD 237 (501)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCC
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCC
Confidence 89999999999998888777666665544433221 11111111 111234433333 222223334467788888887
Q ss_pred CCC-----------hhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHH-HHHHH-HHHHHHHHH
Q 008094 289 QRD-----------LPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYV-SVLIS-FGAVAGLTT 355 (578)
Q Consensus 289 ~k~-----------ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~-~~~~~~~~~ 355 (578)
++. .-.+...+..+...+..+........ ....+|...+.....++.. ..+.. +.++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~-----~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~ 312 (501)
T 2jln_A 238 PNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVL-----VGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWS 312 (501)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHT
T ss_pred ccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 541 22333333333332222222222111 1224455444332333332 44555 666667766
Q ss_pred HHHH-HHHHHHHHHHHH
Q 008094 356 TLLV-GLYVQSRLYLGL 371 (578)
Q Consensus 356 ~~~~-~~~~~sR~l~~~ 371 (578)
+... ..++.+--+..+
T Consensus 313 tn~~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 313 TNPAANLLSPAYTLCST 329 (501)
T ss_dssp THHHHHTHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHh
Confidence 6653 566776665554
No 5
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.45 E-value=0.00048 Score=74.35 Aligned_cols=282 Identities=12% Similarity=0.117 Sum_probs=128.2
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHH-HHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhc
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~-~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g 135 (578)
.|+++++...+-.+++.+++.-+.. ++..+. .|- ...+.|. ..+.....++.+...-.+. + .-..++|.++-||
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~-~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~-~-~~T~~e~l~~Rfg 123 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-G-IYTIPEFVEKRFN 123 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHH-TCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT-T-CCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHH-cCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-C-CCCcHHHHHHHcc
Confidence 4778888765555556666555544 444444 443 2333222 2222233344444444443 2 4578999999999
Q ss_pred hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHh
Q 008094 136 ELTAFLVFAQLMLDYHI-GAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (578)
Q Consensus 136 ~~~g~~~g~~~~l~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (578)
+....+.+....+.+.. ..+....+.+..++.+++. +.+. .+.+...+.......-
T Consensus 124 ~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi--------~~~~---------------~i~i~~~i~~~Yt~~G 180 (593)
T 2xq2_A 124 KKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGI--------PLMY---------------SILGLALFALVYSIYG 180 (593)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCC--------CHHH---------------HHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------cHHH---------------HHHHHHHHHHHHHHhc
Confidence 88877666554443332 2333444445555554431 1110 0111122222233334
Q ss_pred hhHH---HHHHHHHHHHHHHHHHHHHHhh--hhc-----------ccccCCCCCCCCC---------ChHHHHHHHHHHH
Q 008094 215 GVGE---SSVLNSCMTVVKVIIVIVVIFA--GAF-----------EVDVSNWSPFAPN---------GFKEILTGATVVF 269 (578)
Q Consensus 215 g~~~---~~~~~~~~~~~~~~~~~~~~i~--~~~-----------~~~~~~~~~~~~~---------g~~~~~~~~~~~~ 269 (578)
|.|. +..+|.++..+..+.+.++.+. +-. ....+.++.+.+. ++..++.+.....
T Consensus 181 Gl~av~~TD~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 260 (593)
T 2xq2_A 181 GLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVAN 260 (593)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHH
Confidence 5554 4445544433333222222211 100 0001222211111 1211111121222
Q ss_pred hhccchHH-HhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHH---HHhcc-cc--------------cccc-CCCChH
Q 008094 270 FAYVGFDA-VANSAEESKKPQRDLPIGILGSLLICAALYVGVSL---VLTGM-VP--------------YKFL-DEDAPL 329 (578)
Q Consensus 270 ~~~~G~e~-~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~---~~~~~-~~--------------~~~~-~~~~p~ 329 (578)
..+.|.+. ..+-.-+.||+ |+..|+.+.+.....++.++... ..... .+ ..+. +.|..+
T Consensus 261 ~~~~~~~q~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~ 339 (593)
T 2xq2_A 261 LYYWGFNQYIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAY 339 (593)
T ss_dssp HHHHTTTCSHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHH
T ss_pred HHhhcCChHHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHH
Confidence 33445442 34555577886 67888887776654444332211 11111 00 0112 234445
Q ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 330 SDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 368 (578)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 368 (578)
.... +..++++..++..+.+.+.+++..+.+.+.|-++
T Consensus 340 p~l~-~~lp~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 340 PWLT-QFLPVGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp HHHH-HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 6677888878777878888888888777776543
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.30 E-value=0.0011 Score=70.57 Aligned_cols=109 Identities=10% Similarity=0.073 Sum_probs=59.0
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhch
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~ 136 (578)
-|+++++...+-.+++.+++.-+...+......|-. ..+.|. ..+.....+..+...-.+. + .=..++|.++-||+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~-~-~~T~~e~l~~Rfg~ 95 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEK-G-IYTIPEFVEKRFNK 95 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT-T-CCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHHc-C-CccHHHHHHHHcCc
Confidence 378999988776667777665555544333334543 322222 2222233344444444443 2 45789999999999
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 008094 137 LTAFLVFAQLMLDYHI-GAASIARSLASYVVSIL 169 (578)
Q Consensus 137 ~~g~~~g~~~~l~~~~-~~a~~~~~~~~~~~~~~ 169 (578)
....+.+....+.+.. ..+......+..++.++
T Consensus 96 ~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~ 129 (530)
T 3dh4_A 96 KLKTILAVFWISLYIFVNLTSVLYLGGLALETIL 129 (530)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8877766655444432 22333333444444443
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=97.33 E-value=0.21 Score=52.17 Aligned_cols=242 Identities=13% Similarity=0.113 Sum_probs=122.2
Q ss_pred ChhHHHHHHhhhhhhhhHHHHHHHH-HhhhCcHHHHHHHHHHHH-HHH---HHHHHHHHhhcCCCCccchhhhhHHHhch
Q 008094 62 GLFELVLIGVGASVGAGIFVVTGTV-ARDAGPGVTISFLLAGAA-SVL---NALCYAELASRFPAVVGGAYLYAYTAFNE 136 (578)
Q Consensus 62 ~~~~~~~~~i~~~ig~g~~~~~~~~-~~~~G~~~~~~~ii~~l~-~~~---~a~~~ael~~~~P~~~GG~y~~~~~~~g~ 136 (578)
+..+...-++|..+|.|=....+.. .+++|.+.++.+++..++ .++ .=+++++.++..-+ .|..-.|-+. ..+
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r-~~~i~a~~~l-~~~ 87 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGH-GTTPAIFYLL-WRN 87 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTC-CSHHHHHHHH-SCS
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccC-CCHHHHHHHh-cCC
Confidence 3456666778888998866666654 456666666666655444 333 33344444444444 4555444322 111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cc-ccCCC--C-------ccccC----C--Cccccccchh
Q 008094 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELF----PF-FKENI--P-------SWIGH----G--GEEFLGGTLS 196 (578)
Q Consensus 137 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~----~~-~~~~~--~-------~~~~~----~--~~~~~~~~~~ 196 (578)
...-..||...+.-......+....+-.+..+++.+ |. ++.+. . .+... . ..+.-.-...
T Consensus 88 ~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~~~~ 167 (519)
T 2a65_A 88 RFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLF 167 (519)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCCCHH
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCccHH
Confidence 111223343333322222233333333333333221 20 11110 0 00000 0 0000000122
Q ss_pred hhHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHhhhhcccc-------------cCCCCCCCCCChHHHH
Q 008094 197 INILAPILLALLTIVLCWGV-GESSVLNSCMTVVKVIIVIVVIFAGAFEVD-------------VSNWSPFAPNGFKEIL 262 (578)
Q Consensus 197 ~~~~~~~~~~~~~~i~~~g~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~~~~~~~g~~~~~ 262 (578)
..+..++..++...+..+|+ |-.+|.+.+......+.++++.+-++...+ ..+|+... +...+.
T Consensus 168 ~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~--~~~vw~ 245 (519)
T 2a65_A 168 AYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLK--DPGVWI 245 (519)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTT--CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhC--CHHHHH
Confidence 23334455556667777899 678999988888777777766665443322 11222221 123567
Q ss_pred HHHHHHHhhcc-chHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHH
Q 008094 263 TGATVVFFAYV-GFDAVANSAEESKKPQRDLPIGILGSLLICAALYV 308 (578)
Q Consensus 263 ~~~~~~~~~~~-G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~ 308 (578)
.+...++|++. |+-....++.-.|+ +.|++|............-+
T Consensus 246 ~A~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sl 291 (519)
T 2a65_A 246 AAVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEV 291 (519)
T ss_dssp HHHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHH
Confidence 78888889885 88788888877775 57888876655555544433
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=85.58 E-value=37 Score=35.25 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=19.4
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHH
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVV 82 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~ 82 (578)
|.+++..+.++|.+++-+|.|+...
T Consensus 93 kPefS~~sW~aMlF~AGmGiGl~Fw 117 (539)
T 4ain_A 93 APEFRTVSWISMMFAAGMGIGLMFY 117 (539)
T ss_dssp CCSSCHHHHHHHHHTTSCCTHHHHH
T ss_pred CCCCcchHHHHHHHHHhhcchheee
Confidence 4568888888899998888876543
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=58.70 E-value=11 Score=24.42 Aligned_cols=18 Identities=11% Similarity=0.178 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhccCCCCC
Q 008094 490 IAVLASAMLCLRHGYSDP 507 (578)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~ 507 (578)
++.++.+++++|++++++
T Consensus 26 ii~~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 26 VVALGIGLFMRRRHIVRK 43 (44)
T ss_dssp HHHHHHHHHHHTTTCCSC
T ss_pred HHHHHHHHHhhhhHhhcc
Confidence 333444555555555544
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=57.94 E-value=12 Score=24.33 Aligned_cols=18 Identities=17% Similarity=0.086 Sum_probs=8.8
Q ss_pred HHHHHHHHHhccCCCCCC
Q 008094 491 AVLASAMLCLRHGYSDPP 508 (578)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~ 508 (578)
+.+..|++++|+++++++
T Consensus 26 i~~~~~~~~RRRr~~~kr 43 (44)
T 2l2t_A 26 VGLTFAVYVRRKSIKKKR 43 (44)
T ss_dssp HHHHHHHHHHTTCSSCCC
T ss_pred HHHHHHHHhhhhhhhhcc
Confidence 334445555555555443
No 11
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=46.23 E-value=2.6e+02 Score=28.67 Aligned_cols=25 Identities=4% Similarity=0.102 Sum_probs=19.1
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHH
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVV 82 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~ 82 (578)
|.+++..+-.+|.+++-+|.|+...
T Consensus 88 kPefs~~sW~aMlF~aGmGiGl~fw 112 (509)
T 2wsw_A 88 KPEFSTASWIFMMFASCTSAAVLFW 112 (509)
T ss_dssp CCSSCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCccchHHHHHHHHhhhhHHhhh
Confidence 4468888888898898888775543
No 12
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=37.66 E-value=31 Score=22.31 Aligned_cols=12 Identities=17% Similarity=-0.000 Sum_probs=5.3
Q ss_pred HHHHHhccCCCC
Q 008094 495 SAMLCLRHGYSD 506 (578)
Q Consensus 495 ~~~~~~~~~~~~ 506 (578)
..++++|++.++
T Consensus 31 ~~~~~RRR~~~~ 42 (44)
T 2jwa_A 31 FGILIKRRQQKI 42 (44)
T ss_dssp HHHHHHHHCSCC
T ss_pred HHhheehhhhhc
Confidence 334444444443
No 13
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=25.74 E-value=74 Score=26.29 Aligned_cols=14 Identities=7% Similarity=0.028 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHHh
Q 008094 517 LLPAVSIFFNLFLF 530 (578)
Q Consensus 517 ~~~~~~~~~~~~~~ 530 (578)
..|++..+...+.+
T Consensus 66 l~pv~~~l~g~l~l 79 (137)
T 2i68_A 66 VGIVLISLLSWGFF 79 (137)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34555444444443
No 14
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=24.20 E-value=5.5e+02 Score=25.73 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 008094 484 LIVAVVIAVLASAMLCLRH 502 (578)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~ 502 (578)
...++++...+.|..++++
T Consensus 449 ~~~~~~~~~~i~~~~~~~~ 467 (511)
T 4djk_A 449 LVVSFLVVLALPFILYAVH 467 (511)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444444455544443
Done!