Query 008096
Match_columns 577
No_of_seqs 142 out of 2044
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 18:02:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 9.7E-31 3.3E-35 282.8 27.9 446 11-553 7-477 (491)
2 2xut_A Proton/peptide symporte 100.0 7.8E-31 2.7E-35 286.0 22.6 484 13-556 8-511 (524)
3 1pw4_A Glycerol-3-phosphate tr 100.0 3.1E-27 1.1E-31 251.7 27.1 399 15-549 26-435 (451)
4 4gc0_A D-xylose-proton symport 100.0 3.7E-28 1.3E-32 262.3 17.5 418 51-568 53-483 (491)
5 3o7q_A L-fucose-proton symport 99.9 1.1E-25 3.6E-30 239.1 29.0 357 12-507 21-408 (438)
6 2gfp_A EMRD, multidrug resista 99.9 7.7E-24 2.6E-28 220.4 13.8 166 21-216 4-169 (375)
7 2cfq_A Lactose permease; trans 99.9 9.3E-23 3.2E-27 216.1 8.4 389 18-550 8-402 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 1.8E-12 6.3E-17 137.2 12.7 179 17-221 252-433 (451)
9 3o7q_A L-fucose-proton symport 99.3 3.1E-11 1.1E-15 127.3 17.0 168 17-216 258-427 (438)
10 2cfq_A Lactose permease; trans 99.2 1.2E-11 4E-16 130.5 10.0 168 27-223 230-401 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 1.2E-10 3.9E-15 125.1 10.9 185 19-224 285-474 (491)
12 4gc0_A D-xylose-proton symport 99.0 1.4E-08 4.8E-13 108.7 19.1 184 20-227 279-468 (491)
13 2gfp_A EMRD, multidrug resista 98.8 9.5E-10 3.3E-14 113.6 0.3 162 17-208 199-363 (375)
14 2xut_A Proton/peptide symporte 98.2 5.4E-06 1.9E-10 89.3 11.1 139 360-547 56-198 (524)
15 3mkt_A Multi antimicrobial ext 78.4 61 0.0021 32.8 22.6 16 530-545 425-440 (460)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.98 E-value=9.7e-31 Score=282.75 Aligned_cols=446 Identities=17% Similarity=0.244 Sum_probs=290.2
Q ss_pred ccCCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHhHhhhhchhhhhhhhhh-ccchh
Q 008096 11 RKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQ-----LHMPLTKAANTLTNFGGTGSLTPLIGAFVADT-YAGRF 84 (577)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr-~~Grk 84 (577)
..+++++..+.+....++..+.+|++.++++.|++++ +|+|..+.+++.+.+.++..++++++|+++|| + |||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r 85 (491)
T 4aps_A 7 TFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GAR 85 (491)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHH
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cch
Confidence 4456778888888899999999999999999999998 99999999999999999999999999999999 8 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCch
Q 008096 85 WTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPK 164 (577)
Q Consensus 85 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 164 (577)
+++.++.++..++.++++++. +.+.++++|+++|++.+...|+..++++|++|+++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~- 142 (491)
T 4aps_A 86 PAVFWGGVLIMLGHIVLALPF----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR- 142 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHhh----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc-
Confidence 999999999999999988765 677799999999999999999999999999997652
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHcccccccc---CCCC-ChhhHHHH
Q 008096 165 QATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNL---NPAG-SPFVRLMQ 240 (577)
Q Consensus 165 ~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~ 240 (577)
+|+.++++++.+.++|..++|.+++++.+..||+++|++.++..+++.+.+....++...+ ++.. .+.++..+
T Consensus 143 ---~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
T 4aps_A 143 ---RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKP 219 (491)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHH
T ss_pred ---cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHH
Confidence 2677888899999999999999999999989999999998877766666555443332221 1111 11111111
Q ss_pred HHH--------------HHHhhccccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCccccc
Q 008096 241 VCV--------------AAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLN 306 (577)
Q Consensus 241 ~~~--------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 306 (577)
... ......+.+. +++..... ............. .|+..
T Consensus 220 ~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~------------------~~~~~~~~~~~~~--------~~~~~ 272 (491)
T 4aps_A 220 LLVKVSLAVAGFIAIIVVMNLVGWNSL-PAYINLLT------------------IVAIAIPVFYFAW--------MISSV 272 (491)
T ss_dssp HHHHCCCCCHHHHHHHHHHHHHSSCCT-THHHHHHH------------------HHHHHHHHHHHHH--------HC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccc-ccchhhhh------------------HHHHHHHHHHHHH--------Hhhcc
Confidence 000 0000000000 00000000 0000000000000 00000
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHHHHhhccceeEEeeccccccccccccc-cccchhhhhhHHHHHHHHHhhhhhhhhc
Q 008096 307 TVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQ-IPAGSMSVFTMVSMLSTIALYDRIIIPV 385 (577)
Q Consensus 307 ~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (577)
. ....++++......++.....++..+.+.......+ ..... +.+ ...+.+.....+..++..++.++ +
T Consensus 273 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----l 342 (491)
T 4aps_A 273 K-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATF---AAERV--DSSWFPVSWFQSLNPLFIMLYTPFFAW----L 342 (491)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHGGGGTHHHHH---HHHSC--CCSSSCSGGGTTHHHHHHHHHHHHHHH----H
T ss_pred c-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH---HHHHh--ccCccCHHHHhccchHHHHHHHHHHHH----H
Confidence 0 001223333334444444455555544433221111 11111 111 34566677777777777887666 4
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhh
Q 008096 386 ARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGH 465 (577)
Q Consensus 386 ~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~ 465 (577)
.||+++|+. .....+.+|.++.++++++...... . .+ .....+++++++..++.+++.+...+..
T Consensus 343 ~~r~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 407 (491)
T 4aps_A 343 WTAWKKNQP--SSPTKFAVGLMFAGLSFLLMAIPGA----L---YG------TSGKVSPLWLVGSWALVILGEMLISPVG 407 (491)
T ss_dssp HHHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHH----H---CC------CCTTCCTHHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHhccCC--CchHHHHHHHHHHHHHHHHHHHHHH----h---cC------CCCCccHHHHHHHHHHHHHHHHHHhHHH
Confidence 555555443 4455567888888887766655430 0 00 0112356667778888999999999999
Q ss_pred hhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh
Q 008096 466 LEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYF 545 (577)
Q Consensus 466 ~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 545 (577)
+.++.|..|++.||+++|+.++.+.+|..+++.+.+.+.+. ++.+.|..++++.+++.++.+
T Consensus 408 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 408 LSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK------------------SEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp HHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS------------------STTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------cHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997765431 224457777777777777777
Q ss_pred hhhhcccc
Q 008096 546 FCAKIYTF 553 (577)
Q Consensus 546 ~~~~~~~~ 553 (577)
++.++.++
T Consensus 470 ~~~~~~~~ 477 (491)
T 4aps_A 470 FLSKRIQG 477 (491)
T ss_dssp HC------
T ss_pred HHHHHHHH
Confidence 66655433
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=7.8e-31 Score=285.99 Aligned_cols=484 Identities=22% Similarity=0.350 Sum_probs=283.6
Q ss_pred CCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHH
Q 008096 13 KGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLH------MPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWT 86 (577)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg------~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~ 86 (577)
+.+++.++.+.+..++..+.+|++.++++.|+++++| +|..+.+++.+.+.++..++++++|+++||++|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~ 87 (524)
T 2xut_A 8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT 87 (524)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 4566788888999999999999999999999999999 9999999999999999999999999999995599999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhh
Q 008096 87 ITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQA 166 (577)
Q Consensus 87 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 166 (577)
+.++.++..++.++++++. .+.+.+++.|++.|++.+...|+..++++|++|+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---- 142 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFE---------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---- 142 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTS---------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT----
T ss_pred HHHHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc----
Confidence 9999999999988888753 146778999999999999999999999999999887
Q ss_pred hhhhh---hhhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHH
Q 008096 167 TKTWK---YFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCV 243 (577)
Q Consensus 167 ~~r~~---~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (577)
|++ .+++++.+.++|..++|.+++++.+..||++.|++.++..+++.+.+....++.+..+++.++..+..+.+.
T Consensus 143 --r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (524)
T 2xut_A 143 --KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIR 220 (524)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHH
Confidence 654 455599999999999999999998888999999998887776666555444433322222221111111111
Q ss_pred HHHhhccccCCCCCcccccccchhhhhhcCCcccccccchhhhhhh----hccccccCCCCCccc-------ccchhhhh
Q 008096 244 AAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAA----IVTEEDDIKSPNLWR-------LNTVHRVE 312 (577)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~-------~~~~~~~~ 312 (577)
...++++.+. +................ ...+.+....+.... ...+ .....+|+ .......+
T Consensus 221 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 293 (524)
T 2xut_A 221 SALLTKVEGK-GNIGLVLALIGGVSAAY---ALVNIPTLGIVAGLCCAMVLVMG---FVGAGASLQLERARKSHPDAAVD 293 (524)
T ss_dssp ------CTTH-HHHHHHHHHHHHHHHHH---TGGGTTTTCSSHHHHHHHHHHHH---HHHTGGGTHHHHSCCSCCSSSST
T ss_pred HHHhhhhccc-Cccchhhhhhhhhhhhh---hhcccchhhhhhhhhhhhhhhhc---ccccchhhHHhhhhccccHhHHH
Confidence 1111111000 00000000000000000 000000000000000 0000 00011220 00011122
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhccceeEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCC
Q 008096 313 ELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGL 392 (577)
Q Consensus 313 ~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 392 (577)
++|+......++.....++..+.+..+.+..+....+... + ...+.+...+.+..++..++.+++..+..+|++++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (524)
T 2xut_A 294 GVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK 369 (524)
T ss_dssp TTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC
Confidence 3344444444444444444444444333222221111110 0 13556666777777888888777655555655433
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 008096 393 DRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQ 472 (577)
Q Consensus 393 ~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~ 472 (577)
. ++.+++.+|+++.++++++....... . +.....+.+++++.+++.+++++...+..+.++.+.
T Consensus 370 ~---~~~~~~~~g~~~~~~~~~~~~~~~~~------~-------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 433 (524)
T 2xut_A 370 L---TALRKMGAGIAITGLSWIVVGTIQLM------M-------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQ 433 (524)
T ss_dssp ----CCHHHHHTHHHHHHHHHHTTTTTTTT------T-------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred C---ChHHHHHHHHHHHHHHHHHHHHHHHH------h-------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 44555777877777776655443200 0 000123556667788999999999999999999999
Q ss_pred cCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhccc
Q 008096 473 APESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYT 552 (577)
Q Consensus 473 ~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 552 (577)
+|++.||+++|+.++...+|+.+++.+.+.+.+..+ .+|..+ .+.+.....|++.+++.++++++++++.++++
T Consensus 434 ~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (524)
T 2xut_A 434 APKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQ--TGMSVTAFQMFFFAGFAILAAIVFALYARSYQ 507 (524)
T ss_dssp CCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHH--HHSCHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred CcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----cccccc--ccccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999988644210 012110 00011123367777777887777777766655
Q ss_pred cccc
Q 008096 553 FKPI 556 (577)
Q Consensus 553 ~~~~ 556 (577)
+++.
T Consensus 508 ~~~~ 511 (524)
T 2xut_A 508 MQDH 511 (524)
T ss_dssp ----
T ss_pred cchh
Confidence 5443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=3.1e-27 Score=251.72 Aligned_cols=399 Identities=11% Similarity=0.006 Sum_probs=256.0
Q ss_pred CcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHH
Q 008096 15 GIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIY 94 (577)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~ 94 (577)
+|+.+..+....+...+..+.+.+.+|.+. +++ .|..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence 355555555566666666666666666555 567 9999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHH----hhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhh
Q 008096 95 QIGMFSLTL----SAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTW 170 (577)
Q Consensus 95 ~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 170 (577)
.++.+++++ +. +++.++++|+++|++.+...+...++++|++|+++ |+
T Consensus 103 ~~~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~ 154 (451)
T 1pw4_A 103 AAVMLFMGFVPWATS----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RG 154 (451)
T ss_dssp HHHHHHHHHCHHHHS----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HH
T ss_pred HHHHHHHHhhhhccc----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hh
Confidence 999999998 65 56779999999999999999999999999999877 99
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhccccc-chhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhc
Q 008096 171 KYFNWYYFVMGAAVLVAVTVLVYIQDNVG-WNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKR 249 (577)
Q Consensus 171 ~~~~~~~~~~~ig~~lg~~i~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (577)
+++++.+.+.++|.+++|.+++++.+..| ||+.|++.++..++..++..+..++.+......+ ..+
T Consensus 155 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------ 221 (451)
T 1pw4_A 155 GIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP-IEE------------ 221 (451)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS-CTT------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCC-hhh------------
Confidence 99999999999999999999999888888 9999999888776655554444433211110000 000
Q ss_pred cccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhh-hhHHHHHH
Q 008096 250 NLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRM-GPIWASGI 328 (577)
Q Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-~~l~~~~~ 328 (577)
. +.+ .+.+. .. +.+....++....+.....+.+... +..++...
T Consensus 222 ---~-~~~---~~~~~-------~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (451)
T 1pw4_A 222 ---Y-KND---YPDDY-------NE---------------------KAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYL 266 (451)
T ss_dssp ---T-CCC--------------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred ---h-ccc---ccccc-------hh---------------------hhhcccccccchHHHHHcCHHHHHHHHHHHHHHH
Confidence 0 000 00000 00 0000000000000001111222111 11111122
Q ss_pred HHHHHhhccceeEEeeccccccccccccc-cccchhhhhhHHHHHHHHHhhhhhhhhccccc--cCCCCCCCchhHHHHH
Q 008096 329 LLITAYAQQGTFSLQQAKSMDRHLTKSFQ-IPAGSMSVFTMVSMLSTIALYDRIIIPVARKF--TGLDRGITFLHRMGIG 405 (577)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~~~ig 405 (577)
.........+.+ ..... +.+ ...+.+.....+..+++.++.++ +.||+ ++|+ .+.++
T Consensus 267 ~~~~~~~~~~~~-------~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~----l~~~~~~~~~~-------~~~~~ 326 (451)
T 1pw4_A 267 LRYGILDWSPTY-------LKEVK--HFALDKSSWAYFLYEYAGIPGTLLCGW----MSDKVFRGNRG-------ATGVF 326 (451)
T ss_dssp HHHHHHHHHHHH-------BTTBS--CCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTSTTCHH-------HHHHH
T ss_pred HHHHHHHHHHHH-------HHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCCch-------hHHHH
Confidence 222221111111 11112 111 11334445555555666666555 55554 3222 14444
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHH
Q 008096 406 FVISV-LATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATAL 484 (577)
Q Consensus 406 ~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi 484 (577)
..+.. ++++++.... ..+.+......++.+++.....+..+.++.+..|++.||++.|+
T Consensus 327 ~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 386 (451)
T 1pw4_A 327 FMTLVTIATIVYWMNP--------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGF 386 (451)
T ss_dssp HHHHHHHHHHHTTSCC--------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHH
Confidence 44443 4444333221 12444555666778888888888888999999999999999999
Q ss_pred HHHHHhH-HHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhh
Q 008096 485 FWTANSI-GNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAK 549 (577)
Q Consensus 485 ~~~~~~l-g~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 549 (577)
.+....+ |..+++.+.+.+.+.. ++...|++.+++.+++.++.++..+
T Consensus 387 ~~~~~~~~g~~~~~~~~g~l~~~~-----------------g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 387 TGLFGYLGGSVAASAIVGYTVDFF-----------------GWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSS-----------------CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-----------------CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999 9999999999987643 1245577777777777766666544
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.95 E-value=3.7e-28 Score=262.29 Aligned_cols=418 Identities=12% Similarity=0.074 Sum_probs=237.0
Q ss_pred ChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhH
Q 008096 51 PLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLA 130 (577)
Q Consensus 51 s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (577)
+..+.+++.+++.++..+++++.|+++||+ |||+++.++.+++.++.++++++........+ ...-...-..+++
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~----~~~~~~~~a~~~~ 127 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP----DNTVPVYLAGYVP 127 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS----SSSCCGGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc----hhHHHHHHhhhHH
Confidence 446678999999999999999999999999 99999999999999999999964311110000 0000001134788
Q ss_pred HHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccc--------ccchh
Q 008096 131 ILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDN--------VGWNW 202 (577)
Q Consensus 131 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~--------~gw~~ 202 (577)
.++++|+++|+|.|+..+..+++++|..|+++ |++..++++.+..+|.++++.++..+... .+|++
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY 201 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH
Confidence 99999999999999999999999999999887 99999999999999999998887665432 34776
Q ss_pred hhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCCCCcccccccchhhhhhcCCcccccccc
Q 008096 203 GLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHM 282 (577)
Q Consensus 203 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 282 (577)
.+.+..+..++.++.... .||+|+++..+++.+++....++....+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~--------------------------------~peSp~~L~~~~~~~~a~~~l~~~~~~~~~ 249 (491)
T 4gc0_A 202 MFASECIPALLFLMLLYT--------------------------------VPESPRWLMSRGKQEQAEGILRKIMGNTLA 249 (491)
T ss_dssp HHHTTHHHHHHHHHHGGG--------------------------------SCCCHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhhhhhhhhhhhc--------------------------------CCCChHHHHHcCchhHHHHhHHHhcCCchh
Confidence 666555554443333222 222333333322222222221111100000
Q ss_pred h--hhh-hhhhccccccCCCCCcccccchhhhhhhhhhhhh-hhHHHHHH-HHHHHhhccceeEEeeccccccccccccc
Q 008096 283 K--FLD-KAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRM-GPIWASGI-LLITAYAQQGTFSLQQAKSMDRHLTKSFQ 357 (577)
Q Consensus 283 ~--~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (577)
+ ..+ ......++ +... ......++..... ...+.... ......... . ......+ ...
T Consensus 250 ~~~~~~~~~~~~~~~---~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~-~~~ 311 (491)
T 4gc0_A 250 TQAVQEIKHSLDHGR---KTGG------RLLMFGVGVIVIGVMLSIFQQFVGINVVLYYA-------P-EVFKTLG-AST 311 (491)
T ss_dssp HHHHHHHHHHHHHHH---HHTT------HHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHH-------H-HHHHHSS-CCH
T ss_pred HHHHHHHHHHHHhhh---hhhh------HHHHhcccHHHHHHHHHHHHHHhhhhHHHhcc-------h-HHHHhcC-CCc
Confidence 0 000 00000000 0000 0000011111111 11000000 000000000 0 0000010 000
Q ss_pred cccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 008096 358 IPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPH 437 (577)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (577)
...........+..++...+..+ +.||+++|+. +..+.....++++.++.... .
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~----l~dr~Grr~~-------~~~~~~~~~~~~~~l~~~~~--------~------- 365 (491)
T 4gc0_A 312 DIALLQTIIVGVINLTFTVLAIM----TVDKFGRKPL-------QIIGALGMAIGMFSLGTAFY--------T------- 365 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHCSHHH-------HHHHHHHHHHHHHHHHHHHH--------T-------
T ss_pred cchhhHHHHHHHHHHHHHHHHHH----HHHhhcCcch-------hccchHHHHHHHHHHHHHHh--------c-------
Confidence 11112222333333444444333 5566655433 66677767666665554330 0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 008096 438 IIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLP 517 (577)
Q Consensus 438 ~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~ 517 (577)
...+...++...++.........+..+.+..|..|++.|++++|+.+..+++++++++.+.+.+.+....
T Consensus 366 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~-------- 435 (491)
T 4gc0_A 366 --QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL-------- 435 (491)
T ss_dssp --TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH--------
T ss_pred --ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 0112222333333333334455677889999999999999999999999999999999998876432100
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCCCCc
Q 008096 518 DNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYTFKPIQMHQKGGDSSSS 568 (577)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (577)
....+..+.|++++++++++.++.+++.||+|+++.||.++.-+.+.+
T Consensus 436 ---~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 436 ---VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETK 483 (491)
T ss_dssp ---HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC----
T ss_pred ---HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCc
Confidence 001122345788889999999999999999999999998766544433
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.95 E-value=1.1e-25 Score=239.07 Aligned_cols=357 Identities=11% Similarity=0.029 Sum_probs=234.7
Q ss_pred cCCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHH
Q 008096 12 KKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVAS 91 (577)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~ 91 (577)
.+.+++.+..+....++..+......+.+| ++++++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++.++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~ 98 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGL 98 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHH
Confidence 345566666655566666666665555555 47789999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHH---HHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhh
Q 008096 92 IIYQIGMFSL---TLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATK 168 (577)
Q Consensus 92 ~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 168 (577)
++..++.+++ +++. +++.++++|++.|++.+...+...++++|++|+++
T Consensus 99 ~~~~~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------ 150 (438)
T 3o7q_A 99 FLYALGAALFWPAAEIM----------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------ 150 (438)
T ss_dssp HHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------
T ss_pred HHHHHHHHHHHhccccc----------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------
Confidence 9999999998 5544 78889999999999999999999999999999988
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhc-cccc-------------------------chhhhHHHHHHHHHHHHHHHHcc
Q 008096 169 TWKYFNWYYFVMGAAVLVAVTVLVYIQ-DNVG-------------------------WNWGLGIPTVAMFLSIIAFVFGY 222 (577)
Q Consensus 169 r~~~~~~~~~~~~ig~~lg~~i~~~l~-~~~g-------------------------w~~~f~~~~~~~~~~~~~~~~~~ 222 (577)
|++++++++.+.++|..++|.+++++. +..+ |++.|++.++..++..+++.+.+
T Consensus 151 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 230 (438)
T 3o7q_A 151 GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTK 230 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999987 5544 99999777665554444433321
Q ss_pred -ccccccCCCCChhhHHHHHHHHHHhhccccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCC
Q 008096 223 -PLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPN 301 (577)
Q Consensus 223 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 301 (577)
|+.+.+++++++.+ + ...
T Consensus 231 ~p~~~~~~~~~~~~~-------------------------------------------~------------------~~~ 249 (438)
T 3o7q_A 231 FPALQSDNHSDAKQG-------------------------------------------S------------------FSA 249 (438)
T ss_dssp CCCCTTTCCCCSSTT-------------------------------------------S------------------HHH
T ss_pred CCccccccccccccc-------------------------------------------c------------------hhh
Confidence 11110000000000 0 000
Q ss_pred cccccchhhhhhhhhhhh-hhhHHHHHHHHHHHhhccceeEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhh
Q 008096 302 LWRLNTVHRVEELKSVIR-MGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDR 380 (577)
Q Consensus 302 ~~~~~~~~~~~~~k~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (577)
++ +...+.+.+.. ....++............+.+. .+...+ ......+.......+..+++.++.++
T Consensus 250 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~ 317 (438)
T 3o7q_A 250 SL-----SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYA------VEEIPG-MTAGFAANYLTGTMVCFFIGRFTGTW 317 (438)
T ss_dssp HH-----HHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHSTT-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hH-----HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhccCC-cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00001111111 1111111111111111111110 111111 00112334444455555666666555
Q ss_pred hhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHH
Q 008096 381 IIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAF 460 (577)
Q Consensus 381 ~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~ 460 (577)
+.||+++|+ .+.++.++.++++++..... +.+ .+...++.+++.+.
T Consensus 318 ----l~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~----------------------~~~-~~~~~~~~g~~~~~ 363 (438)
T 3o7q_A 318 ----LISRFAPHK-------VLAAYALIAMALCLISAFAG----------------------GHV-GLIALTLCSAFMSI 363 (438)
T ss_dssp ----HHHHSCHHH-------HHHHHHHHHHHHHHHHHHCC----------------------HHH-HHHHHHHHHHHHTT
T ss_pred ----HHHHhcchH-------HHHHHHHHHHHHHHHHHHcC----------------------CcH-HHHHHHHHHHHHHH
Confidence 455543322 26666666666665554432 222 23345777888888
Q ss_pred HhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 008096 461 MSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFS 507 (577)
Q Consensus 461 ~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~ 507 (577)
..+..+.+..+..|++ ++++.++.. .+.+|+.++|.+.+.+.+..
T Consensus 364 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 364 QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999987 999999887 67799999999999988765
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=7.7e-24 Score=220.43 Aligned_cols=166 Identities=13% Similarity=0.096 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHH
Q 008096 21 FIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFS 100 (577)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~ 100 (577)
.+....++..+......+.+|.+ .+++|.|..+.+++.+.+.++..+++++.|+++||+ |||+.+..+.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHH
Confidence 33445666666666666777664 568999999999999999999999999999999998 9999999999999999999
Q ss_pred HHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHH
Q 008096 101 LTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM 180 (577)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 180 (577)
++++. +.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++++.+.
T Consensus 82 ~~~~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 133 (375)
T 2gfp_A 82 AVTTS----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGI 133 (375)
T ss_dssp HHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHH
T ss_pred HHHhc----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHH
Confidence 99876 78889999999999999999999999999999888 999999999999
Q ss_pred HHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHH
Q 008096 181 GAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSII 216 (577)
Q Consensus 181 ~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~ 216 (577)
.+|..++|.+++++.+..||++.|++.++..++..+
T Consensus 134 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 134 LVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 999999999999999888999999887776554444
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.87 E-value=9.3e-23 Score=216.13 Aligned_cols=389 Identities=8% Similarity=0.000 Sum_probs=219.3
Q ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHH
Q 008096 18 TMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIG 97 (577)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~ 97 (577)
..+.+....++..+.+....+++|.|+++++|+|..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence 344445555666666777788999999999999999999999999999999999999999998 9999999888776553
Q ss_pred HHHH---HHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhh
Q 008096 98 MFSL---TLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN 174 (577)
Q Consensus 98 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 174 (577)
...+ .++... ...++.++++.+++.+...+...+...++.++. . +.++..++
T Consensus 87 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~---~~~~~~~g 141 (417)
T 2cfq_A 87 FAPFFIFIFGPLL---------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV-S---RRSNFEFG 141 (417)
T ss_dssp HHHHHHHTHHHHH---------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH-H---HHHTCCHH
T ss_pred HHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-h---hhcccchH
Confidence 2222 121100 001234455555555554444455454444321 1 12566677
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCC
Q 008096 175 WYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMV 254 (577)
Q Consensus 175 ~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (577)
..+...++|..++|.+++++.+ .+|++.|++.++..++..+......|+.+ +..+ + +
T Consensus 142 ~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~---~~~~---~-----------~----- 198 (417)
T 2cfq_A 142 RARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAP---SSAT---V-----------A----- 198 (417)
T ss_dssp HHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCS---CSSC---S-----------S-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcccc---cccc---c-----------c-----
Confidence 7777889999999999998876 68999998776654333332222111100 0000 0 0
Q ss_pred CCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhH-HHHHHHHHHH
Q 008096 255 SDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPI-WASGILLITA 333 (577)
Q Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l-~~~~~~~~~~ 333 (577)
+.+ +.+ + + ...++. .+.....+........ ......+...
T Consensus 199 ~~~----~~~----------~----~-------------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (417)
T 2cfq_A 199 NAV----GAN----------H----S-------------------AFSLKL--ALELFRQPKLWFLSLYVIGVSCTYDVF 239 (417)
T ss_dssp SSS----SSC----------C----C-------------------CCCHHH--HHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc----ccc----------c----c-------------------cccHHH--HHHHhcCCchhhHHHHHHHHHHHHHHH
Confidence 000 000 0 0 000000 0000011111111111 1111111111
Q ss_pred hhccceeEEeeccccccccccccc-cccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHH
Q 008096 334 YAQQGTFSLQQAKSMDRHLTKSFQ-IPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLA 412 (577)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~ 412 (577)
..+.+.++. ...+.. +.+ ...+.....+.+..+++..+.++ +.||+++|+ .+.++.++.+++
T Consensus 240 ~~~~~~~~~---~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~g~----l~dr~g~~~-------~l~~~~~~~~~~ 302 (417)
T 2cfq_A 240 DQQFANFFT---SFFATG---EQGTRVFGYVTTMGELLNASIMFFAPL----IINRIGGKN-------ALLLAGTIMSVR 302 (417)
T ss_dssp HHHHHHHHH---HTSSSH---HHHTHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHhcc---CCChhHHHHHHHHHHHHHHHHHHHHHH----HHHHhcHHH-------HHHHHHHHHHHH
Confidence 111111110 000000 000 00123333444444445555444 555654332 255666666665
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHH-HHHHhH
Q 008096 413 TLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALF-WTANSI 491 (577)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~-~~~~~l 491 (577)
+++..... +.+.+++..++++++.....+..+.++.|..|++.||++.++. ++.+.+
T Consensus 303 ~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~l 360 (417)
T 2cfq_A 303 IIGSSFAT----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQL 360 (417)
T ss_dssp HHHHTTCC----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhH
Confidence 54443221 3344445556667777777777888999999999999999994 888999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhc
Q 008096 492 GNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKI 550 (577)
Q Consensus 492 g~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 550 (577)
|+.++|.+.|.+.+.. ++...|.+.+++.+++.++.++..++
T Consensus 361 g~~~gp~l~G~l~~~~-----------------g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 361 AMIFMSVLAGNMYESI-----------------GFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHTHHHHTHHHHS-----------------HHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHhhhhHHHHHHhc-----------------CcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 9999999999876532 23455777777777777766655543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.37 E-value=1.8e-12 Score=137.24 Aligned_cols=179 Identities=14% Similarity=0.119 Sum_probs=149.1
Q ss_pred ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhc-cchhHHHHHHHHHHH
Q 008096 17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTY-AGRFWTITVASIIYQ 95 (577)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~-~Grk~~~~~~~~~~~ 95 (577)
+.++.+....++..+..+++..++|.|+++.+|++..+.+++.+...++..++.++.|+++||+ .|||+.+.++.++..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 4556666678888888899999999999988999999999999999999999999999999994 278888877776655
Q ss_pred -HHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhh
Q 008096 96 -IGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN 174 (577)
Q Consensus 96 -i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 174 (577)
++.+++.+.. ..+.+.+.+..++.|++.+...+...+++.|.+|+++ |+++++
T Consensus 332 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~ 385 (451)
T 1pw4_A 332 TIATIVYWMNP--------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAG 385 (451)
T ss_dssp HHHHHHTTSCC--------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHH
T ss_pred HHHHHHHHHhc--------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHH
Confidence 5544444321 1245667777888899999988999999999999887 999999
Q ss_pred HHHHHHHH-HHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHc
Q 008096 175 WYYFVMGA-AVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFG 221 (577)
Q Consensus 175 ~~~~~~~i-g~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 221 (577)
+++...++ |..++|.+.|++.+..||+..|++.+++.+++.++....
T Consensus 386 ~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 386 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999998888777766655543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.30 E-value=3.1e-11 Score=127.34 Aligned_cols=168 Identities=14% Similarity=0.094 Sum_probs=135.6
Q ss_pred ceehHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHH
Q 008096 17 ITMPFIFANEVCEKLAVVGFHANMISY-LTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQ 95 (577)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (577)
+.++......++.....+++..+++.| +++.+|++..+++++.+...++..++.++.|+++||+ |||+.+.++.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 445555666677777788888999999 8888899999999999999999999999999999998 99999999998888
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhH
Q 008096 96 IGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW 175 (577)
Q Consensus 96 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 175 (577)
++.+++.+.. +... .+..++.|++.+...|...++..|.+|++ ++.+.++
T Consensus 337 ~~~~~~~~~~----------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 386 (438)
T 3o7q_A 337 ALCLISAFAG----------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSF 386 (438)
T ss_dssp HHHHHHHHCC----------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHH
T ss_pred HHHHHHHHcC----------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhH
Confidence 8877777644 3333 33447888999999999999999998843 3444555
Q ss_pred HHHHHHHHHHHHHHHHHhhccccc-chhhhHHHHHHHHHHHH
Q 008096 176 YYFVMGAAVLVAVTVLVYIQDNVG-WNWGLGIPTVAMFLSII 216 (577)
Q Consensus 176 ~~~~~~ig~~lg~~i~~~l~~~~g-w~~~f~~~~~~~~~~~~ 216 (577)
.. ...+|..++|.+.|++.+..| ++..|++.+++.++..+
T Consensus 387 ~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 387 IV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 44 567999999999999999988 99999877665544433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.25 E-value=1.2e-11 Score=130.55 Aligned_cols=168 Identities=8% Similarity=0.047 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 008096 27 VCEKLAVVGFHANMISYLTTQLHM---PLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTL 103 (577)
Q Consensus 27 ~~~~~~~~~~~~~l~~~l~~~lg~---s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~ 103 (577)
+.....++....++|.|+.+.++. +..+.+++.+...++..++.++.|+++||+ |||+.+..+.++..++.+.+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~ 308 (417)
T 2cfq_A 230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555556788898776653 344567777777788888999999999998 9999999888877776655554
Q ss_pred hhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhH-HHHHHHH
Q 008096 104 SAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW-YYFVMGA 182 (577)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~i 182 (577)
.. +.+.+++..++.+++.+...+...++.+|.+|++. |+++.++ ++....+
T Consensus 309 ~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~l 360 (417)
T 2cfq_A 309 AT----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQL 360 (417)
T ss_dssp CC----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHH
T ss_pred hc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhH
Confidence 32 34556666667777776667777889999999766 8888888 5777889
Q ss_pred HHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccc
Q 008096 183 AVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYP 223 (577)
Q Consensus 183 g~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 223 (577)
|..++|.++|++.+..|+...|.+.++..+++.++.+...+
T Consensus 361 g~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 361 AMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999988888888888877777666665544443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.13 E-value=1.2e-10 Score=125.13 Aligned_cols=185 Identities=9% Similarity=-0.030 Sum_probs=138.6
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHH-----HHHHH
Q 008096 19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTIT-----VASII 93 (577)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~-----~~~~~ 93 (577)
.+.+....++....++....+++.|+++.++.+..+.+++.+...++..++.++.|+++||+ |||+... ++.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 34444455666666777788899999998888878888999999999999999999999998 9886544 67766
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhh
Q 008096 94 YQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF 173 (577)
Q Consensus 94 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 173 (577)
..++.+++.+...... .....+.+.+.+..++.|++.+...|...+++.|.+|++. |+++.
T Consensus 364 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~ 424 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG-------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMM 424 (491)
T ss_dssp HHHHHTTTHHHHHHCC-------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSST
T ss_pred HHHHHHHHHHHHHhcC-------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHH
Confidence 6666666655321100 0011245667778888999999999999999999999988 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHcccc
Q 008096 174 NWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPL 224 (577)
Q Consensus 174 ~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~ 224 (577)
++++...++|..+++.+.+++.+ .++...|++.+...+++.++.+...++
T Consensus 425 g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 425 SMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988865 467777877777666666665555544
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.98 E-value=1.4e-08 Score=108.69 Aligned_cols=184 Identities=13% Similarity=0.048 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHH
Q 008096 20 PFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMF 99 (577)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~ 99 (577)
.......++..+..+....+...++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~ 357 (491)
T 4gc0_A 279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMF 357 (491)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHH
Confidence 3333344444444334444445566678888988888888888899999999999999998 999999999988888877
Q ss_pred HHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHH
Q 008096 100 SLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV 179 (577)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 179 (577)
.++....... ........+..+..+.+. +..|....+.+|.+|.+. |+++.++.+..
T Consensus 358 ~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~ 414 (491)
T 4gc0_A 358 SLGTAFYTQA----------------PGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKALAIAVAA 414 (491)
T ss_dssp HHHHHHHTTC----------------CHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHHHHHHHH
T ss_pred HHHHHHhccc----------------chHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHHHHHHHH
Confidence 7665431111 111222222222333333 345777899999999988 99999999999
Q ss_pred HHHHHHHHHHHHHhhcc------cccchhhhHHHHHHHHHHHHHHHHccccccc
Q 008096 180 MGAAVLVAVTVLVYIQD------NVGWNWGLGIPTVAMFLSIIAFVFGYPLYRN 227 (577)
Q Consensus 180 ~~ig~~lg~~i~~~l~~------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~ 227 (577)
.++|+++++.+.+.+.+ ..++...|++.+.+.+++.+..++..||++.
T Consensus 415 ~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 415 QWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 99999999888766543 2456667877777777777777676666443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.76 E-value=9.5e-10 Score=113.56 Aligned_cols=162 Identities=9% Similarity=-0.032 Sum_probs=126.1
Q ss_pred ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHH-HH
Q 008096 17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASII-YQ 95 (577)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~-~~ 95 (577)
|..+......++.....+.+..++|.|+++.+|+|..+.+.+.+...++..++.++.|+++||+ |++ +..+..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 3445555677777788888899999999988999999999999999999999999999999998 772 3333332 22
Q ss_pred HHHH--HHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhh
Q 008096 96 IGMF--SLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF 173 (577)
Q Consensus 96 i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 173 (577)
.+.. ...... ..+.+.+++..++.|++.+...+...++..|.+| ++ |+++.
T Consensus 276 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~ 328 (375)
T 2gfp_A 276 AGLLMWIPDWFG--------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAG 328 (375)
T ss_dssp TSSSSSHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHH
T ss_pred HHHHHHHHhhhc--------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHH
Confidence 2222 111110 1145667778888999999999999999999988 55 89999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHH
Q 008096 174 NWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPT 208 (577)
Q Consensus 174 ~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~ 208 (577)
++.+...++|..++|.+.+.+.+..+|...+++..
T Consensus 329 g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 329 ALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 99999999999999999999987777877766543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.18 E-value=5.4e-06 Score=89.29 Aligned_cols=139 Identities=16% Similarity=0.135 Sum_probs=96.2
Q ss_pred cchhhhhhHHHHHHHHHhhhhhhhhccccc-cCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 008096 360 AGSMSVFTMVSMLSTIALYDRIIIPVARKF-TGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHI 438 (577)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (577)
.+.+.+...+...++.++.++ +.||+ ++|+. +.++.++.+++.++.....
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~----l~dr~~g~r~~-------~~~~~~~~~~~~~~~~~~~------------------ 106 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGW----IADRFFGKYNT-------ILWLSLIYCVGHAFLAIFE------------------ 106 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHH----HHTTSSCSHHH-------HHHHHHHHHHHHHHHHHTS------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHhcchHH-------HHHHHHHHHHHHHHHHHhc------------------
Confidence 344555556666666666555 55555 54432 6777777777766554321
Q ss_pred cccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHH---HHHHHhHHHHHHHHHHHHHhhhcCCCCCCCC
Q 008096 439 IIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATAL---FWTANSIGNYVSTLLVTLVHKFSAGPNGSNW 515 (577)
Q Consensus 439 ~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi---~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~ 515 (577)
.+.+.+++..++.|++.+...+....++.|.+|++.|+.+.+. .+....+|..+++.+.+.+.+..
T Consensus 107 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------- 175 (524)
T 2xut_A 107 ---HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-------- 175 (524)
T ss_dssp ---SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS--------
T ss_pred ---ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence 1556667778889999999999999999999999999877666 88889999999999877764422
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHHhhh
Q 008096 516 LPDNNLNKGKLEYFYWLITLLQVVNVIYYFFC 547 (577)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 547 (577)
++.+.|++.+++.++..+..++.
T Consensus 176 ---------g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 176 ---------GAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHSS
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHHh
Confidence 23555666666666655555443
No 15
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=78.36 E-value=61 Score=32.82 Aligned_cols=16 Identities=0% Similarity=-0.153 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 008096 530 YWLITLLQVVNVIYYF 545 (577)
Q Consensus 530 ~~~~~~~~~~~~i~~~ 545 (577)
++...+..++..++.+
T Consensus 425 ~~a~~~~~~~~~~~~~ 440 (460)
T 3mkt_A 425 WLGFIIGLSAAALMLG 440 (460)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
Done!