Query 008096
Match_columns 577
No_of_seqs 142 out of 2044
Neff 8.6
Searched_HMMs 13730
Date Mon Mar 25 18:02:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008096.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008096hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 100.0 2.4E-27 1.8E-31 248.8 26.0 161 37-223 44-205 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.9 9.4E-24 6.8E-28 216.7 24.0 398 17-554 7-406 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 99.3 8.7E-12 6.4E-16 128.8 12.7 181 17-221 249-430 (447)
4 d1pv7a_ f.38.1.2 (A:) Lactose 99.2 4.7E-12 3.5E-16 128.1 8.2 148 47-223 253-401 (417)
5 d1rzhh2 f.23.10.1 (H:11-35) Ph 13.4 90 0.0066 16.4 2.7 17 31-47 8-24 (26)
6 d3proc1 d.52.1.1 (C:6-85) Alph 5.2 4.3E+02 0.031 18.1 4.5 41 40-80 3-43 (80)
7 d1o82a_ a.64.2.1 (A:) Bacterio 3.7 2.7E+02 0.019 17.8 2.1 24 45-68 2-25 (70)
8 d3b60a2 f.37.1.1 (A:10-328) Mu 3.5 4.7E+02 0.034 21.4 4.7 17 13-29 12-28 (319)
9 d2iuba2 f.17.3.1 (A:286-349) M 3.1 3E+02 0.022 17.6 2.1 20 528-547 41-60 (64)
10 d2oara1 f.16.1.1 (A:10-118) Ga 2.2 1.1E+03 0.077 16.8 6.0 12 538-549 72-83 (109)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.95 E-value=2.4e-27 Score=248.81 Aligned_cols=161 Identities=11% Similarity=0.067 Sum_probs=138.1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 008096 37 HANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQ 116 (577)
Q Consensus 37 ~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 116 (577)
.+.+.++++ ++|+|.+|.+++.+++.++..+++++.|+++||+ |||+++.++.++..++.++++++.+...
T Consensus 44 ~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~------- 114 (447)
T d1pw4a_ 44 FALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATS------- 114 (447)
T ss_dssp HHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHS-------
T ss_pred HHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhhh-------
Confidence 455556776 5899999999999999999999999999999999 9999999999999999999887653332
Q ss_pred CCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 008096 117 GDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQD 196 (577)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~ 196 (577)
+++.+++.|++.|++.+...+...++++|++|+++ |++++++.+.+.++|..+++.+++.+..
T Consensus 115 -----------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~~~ 177 (447)
T d1pw4a_ 115 -----------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMA 177 (447)
T ss_dssp -----------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhHhh
Confidence 67789999999999999999999999999999887 9999999999999999999998887665
Q ss_pred c-ccchhhhHHHHHHHHHHHHHHHHccc
Q 008096 197 N-VGWNWGLGIPTVAMFLSIIAFVFGYP 223 (577)
Q Consensus 197 ~-~gw~~~f~~~~~~~~~~~~~~~~~~~ 223 (577)
. .+|++.|++.+...++..++.+...+
T Consensus 178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 205 (447)
T d1pw4a_ 178 WFNDWHAALYMPAFCAILVALFAFAMMR 205 (447)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred hhhcccccchhhhhhHHHHHHHHHHhcc
Confidence 4 47999999888776655555444443
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.91 E-value=9.4e-24 Score=216.67 Aligned_cols=398 Identities=8% Similarity=-0.037 Sum_probs=233.4
Q ss_pred ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHH
Q 008096 17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQI 96 (577)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i 96 (577)
|+.+.+....++..+......+++|.|+++++|+|.+|.|++.+++.++..+++++.|+++||+ ||||++.++..+..+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 4456666677777788788889999999999999999999999999999999999999999999 999999999999888
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHH
Q 008096 97 GMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY 176 (577)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 176 (577)
+..++.+..+.+. .....++.+.+.+.+.+...+.......+..+++ ...+....+..
T Consensus 86 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 143 (417)
T d1pv7a_ 86 MFAPFFIFIFGPL------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEFGRA 143 (417)
T ss_dssp THHHHHHHTHHHH------------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHH----HHHHSCCHHHH
T ss_pred HHHHHHHhhhhhh------------------HHHHHHHHHHHhhhcccccccchhhcccccccch----hhhhHHHHHHH
Confidence 8888877652111 2222334444444444444444444443333321 12255567777
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCCC
Q 008096 177 YFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSD 256 (577)
Q Consensus 177 ~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (577)
......+..+++.+++.+.+. +|+..+........+..+...+..++.+..++..+ ..+ + ..+.
T Consensus 144 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------~--~~~~ 207 (417)
T d1pv7a_ 144 RMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVAN-AVG------------A--NHSA 207 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSH-HHH------------S--CCCC
T ss_pred hhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhh-hhh------------h--hccc
Confidence 778888999999999888764 45555555544443333333333332211111110 000 0 0000
Q ss_pred CcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhh-hhhHHHHHHHHHHHhh
Q 008096 257 PNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIR-MGPIWASGILLITAYA 335 (577)
Q Consensus 257 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~-~~~l~~~~~~~~~~~~ 335 (577)
.... ........+.... ................
T Consensus 208 --------------------------------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (417)
T d1pv7a_ 208 --------------------------------------------FSLK--LALELFRQPKLWFLSLYVIGVSCTYDVFDQ 241 (417)
T ss_dssp --------------------------------------------CCHH--HHHHHTTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------cccc--ccccccccccccchhhhhHHHHHHHHhhhc
Confidence 0000 0000000000000 0111111111111100
Q ss_pred ccceeEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHH
Q 008096 336 QQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLV 415 (577)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~ 415 (577)
....+ ......... ..............+...+...+ ..++.||.+++ +.+.++.++.+++++.
T Consensus 242 ~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~r~~~~-------~~~~~~~~~~~~~~~~ 305 (417)
T d1pv7a_ 242 QFANF----FTSFFATGE-QGTRVFGYVTTMGELLNASIMFF----APLIINRIGGK-------NALLLAGTIMSVRIIG 305 (417)
T ss_dssp HHHHH----HTTSSSCHH-HHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHCHH-------HHHHHHHHHHHHHHHH
T ss_pred ccccc----ccccccccc-cchhhhcccccccccccccchhh----hhhhhcccccc-------cchhhhHHHHHHhhhc
Confidence 00000 000000000 00000112222223333333333 44566665433 2367777777776666
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHH-HHHHhHHHH
Q 008096 416 AGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALF-WTANSIGNY 494 (577)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~-~~~~~lg~~ 494 (577)
..... +.+.+++..++.+++.+...+..+.++.|..|++.|+++.|+. +..+.+|..
T Consensus 306 ~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 363 (417)
T d1pv7a_ 306 SSFAT----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI 363 (417)
T ss_dssp HHTCC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHH
T ss_pred ccccc----------------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHH
Confidence 55433 5666677778899999999999999999999999999999986 467889999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhccccc
Q 008096 495 VSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYTFK 554 (577)
Q Consensus 495 l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 554 (577)
+++.+.|.+.|.. ++...|++.+++.++..++.++..++.+..
T Consensus 364 i~~~~~G~l~~~~-----------------g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (417)
T d1pv7a_ 364 FMSVLAGNMYESI-----------------GFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHHHHHHHHH-----------------CHHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred HHHHHHHHHHHHH-----------------CHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 9999999987754 234557788888887777777776654433
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.27 E-value=8.7e-12 Score=128.77 Aligned_cols=181 Identities=13% Similarity=0.083 Sum_probs=140.7
Q ss_pred ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHH
Q 008096 17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQI 96 (577)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i 96 (577)
+.++.+....++.....+++..+++.|+.+.++++..+.++......++..++.+++|+++||+ +|++..........+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 327 (447)
T d1pw4a_ 249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL 327 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHHH
T ss_pred chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHHH
Confidence 4555666677888888899999999999999999999999999999999999999999999998 876654444433333
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHH
Q 008096 97 GMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY 176 (577)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 176 (577)
........... ...+.+...+..++.|++.++..+...++..|.+|++. |+++.++.
T Consensus 328 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~ 384 (447)
T d1pw4a_ 328 VTIATIVYWMN-----------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFT 384 (447)
T ss_dssp HHHHHHHTTSC-----------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHH
T ss_pred HHHHHHHHHhc-----------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHH
Confidence 22222221101 12356667777888899999989999999999999877 99999998
Q ss_pred HHHHHH-HHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHc
Q 008096 177 YFVMGA-AVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFG 221 (577)
Q Consensus 177 ~~~~~i-g~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 221 (577)
+...++ |.+++|.+.|++.+.+||+..|++...+.+++.+++...
T Consensus 385 ~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 385 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 888777 567789999999999999999988777666655554433
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.23 E-value=4.7e-12 Score=128.07 Aligned_cols=148 Identities=8% Similarity=0.008 Sum_probs=125.6
Q ss_pred hcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCccccccc
Q 008096 47 QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADT 126 (577)
Q Consensus 47 ~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (577)
+.+.+....+.......++..++..+.+++.||+ |+|+.+.++.++..++.+++.+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 310 (417)
T d1pv7a_ 253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT--------------------- 310 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC---------------------
T ss_pred ccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc---------------------
Confidence 3445677788888888999999999999999998 999999999999988888887654
Q ss_pred chhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHH-HHHHHHHHHHHHHHHHhhcccccchhhhH
Q 008096 127 GQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY-YFVMGAAVLVAVTVLVYIQDNVGWNWGLG 205 (577)
Q Consensus 127 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~ig~~lg~~i~~~l~~~~gw~~~f~ 205 (577)
+.+.+++..++.|++.+...+...+++.|.+|++. |++..++. .....+|..++|.+.|++.+.+||+..|+
T Consensus 311 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~ 383 (417)
T d1pv7a_ 311 -SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL 383 (417)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred -ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 67778888889999999999999999999999887 89999985 45667999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHccc
Q 008096 206 IPTVAMFLSIIAFVFGYP 223 (577)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~ 223 (577)
+.+++.++..++..+..+
T Consensus 384 ~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 384 VLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 887776666555544443
No 5
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=13.45 E-value=90 Score=16.40 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 008096 31 LAVVGFHANMISYLTTQ 47 (577)
Q Consensus 31 ~~~~~~~~~l~~~l~~~ 47 (577)
+.+|++...+..|++.+
T Consensus 8 w~fw~ffalli~ylqte 24 (26)
T d1rzhh2 8 YSFWIFLAGLIYYLQTE 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 45677888888888865
No 6
>d3proc1 d.52.1.1 (C:6-85) Alpha-lytic protease prodomain {Lysobacter enzymogenes [TaxId: 69]}
Probab=5.22 E-value=4.3e+02 Score=18.14 Aligned_cols=41 Identities=10% Similarity=-0.010 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhc
Q 008096 40 MISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTY 80 (577)
Q Consensus 40 l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~ 80 (577)
+..-|+.+||+|..|+.--...-.-..-+-.-+-.-+.|+|
T Consensus 3 l~~AmqRDLgLt~~qa~~RLa~E~~A~~~~~~lr~~lg~~f 43 (80)
T d3proc1 3 LKFAMQRDLGIFPTQLPQYLQTEKLARTQAAAIEREFGAQF 43 (80)
T ss_dssp HHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGE
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 34567889999999988777766666666666666666666
No 7
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=3.71 E-value=2.7e+02 Score=17.77 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=15.9
Q ss_pred HHhcCCChHHHHHHHHHHhHhhhh
Q 008096 45 TTQLHMPLTKAANTLTNFGGTGSL 68 (577)
Q Consensus 45 ~~~lg~s~~~~~~i~~~~~~~~~~ 68 (577)
.++||++.+.++.+..+...++.+
T Consensus 2 akefgipa~ia~~vlniv~agg~v 25 (70)
T d1o82a_ 2 AKEFGIPAAVAGTVLNVVEAGGWV 25 (70)
T ss_dssp HHHHCCCHHHHHHHHHHHHTTCCH
T ss_pred chhhCCcHHHHHHHHHhhccCcch
Confidence 467888888777776665554443
No 8
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=3.45 E-value=4.7e+02 Score=21.44 Aligned_cols=17 Identities=0% Similarity=-0.355 Sum_probs=8.0
Q ss_pred CCCcceehHHHHHHHHH
Q 008096 13 KGGIITMPFIFANEVCE 29 (577)
Q Consensus 13 ~~~~~~~~~~~~~~~~~ 29 (577)
|+||+.+...+...++.
T Consensus 12 ~~~k~~l~~~~i~~~~~ 28 (319)
T d3b60a2 12 APFKAGLIVAGIALILN 28 (319)
T ss_dssp GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555444444333
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=3.14 E-value=3e+02 Score=17.64 Aligned_cols=20 Identities=15% Similarity=0.349 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 008096 528 YFYWLITLLQVVNVIYYFFC 547 (577)
Q Consensus 528 ~~~~~~~~~~~~~~i~~~~~ 547 (577)
+++++.++..++.++.++.+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~f 60 (64)
T d2iuba2 41 GYPVVLAVMGVIAVIMVVYF 60 (64)
T ss_dssp -CHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554444
No 10
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.23 E-value=1.1e+03 Score=16.79 Aligned_cols=12 Identities=17% Similarity=0.490 Sum_probs=4.6
Q ss_pred HHHHHHHhhhhh
Q 008096 538 VVNVIYYFFCAK 549 (577)
Q Consensus 538 ~~~~i~~~~~~~ 549 (577)
++++++|++..+
T Consensus 72 IiA~vv~F~vvk 83 (109)
T d2oara1 72 LIAFAVYFLVVL 83 (109)
T ss_dssp HHHHHHHHHTHH
T ss_pred HHHHHHHHHHHH
Confidence 333334343433
Done!