Query 008097
Match_columns 577
No_of_seqs 765 out of 3638
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 19:25:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.7E-83 3.6E-88 694.2 54.6 549 5-574 115-779 (857)
2 PLN03081 pentatricopeptide (PP 100.0 6.2E-76 1.4E-80 620.6 49.7 497 43-576 84-618 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.9E-70 6.4E-75 591.2 53.4 475 5-502 216-709 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.6E-68 3.5E-73 566.0 58.0 469 7-504 366-867 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2.2E-67 4.7E-72 557.5 55.3 481 7-517 402-914 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.4E-66 2.9E-71 549.6 47.1 526 10-554 86-663 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-28 3.4E-33 272.2 58.6 542 8-575 326-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.6E-28 9.9E-33 268.4 58.8 504 7-530 359-892 (899)
9 PRK11447 cellulose synthase su 99.9 5.7E-20 1.2E-24 204.6 58.6 474 8-503 59-730 (1157)
10 PRK11447 cellulose synthase su 99.9 2.7E-19 5.9E-24 199.2 52.5 380 90-482 278-745 (1157)
11 PRK11788 tetratricopeptide rep 99.9 1.2E-20 2.5E-25 187.6 29.9 309 90-430 44-366 (389)
12 PRK11788 tetratricopeptide rep 99.9 2.5E-20 5.5E-25 185.2 32.1 301 157-485 45-354 (389)
13 PRK09782 bacteriophage N4 rece 99.9 3E-17 6.4E-22 174.9 52.5 277 212-503 387-696 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 5E-19 1.1E-23 167.7 34.1 360 117-496 117-502 (966)
15 KOG4626 O-linked N-acetylgluco 99.9 5.2E-19 1.1E-23 167.6 33.6 430 14-465 51-506 (966)
16 TIGR00990 3a0801s09 mitochondr 99.9 5.1E-17 1.1E-21 170.0 48.5 428 14-478 130-571 (615)
17 PRK09782 bacteriophage N4 rece 99.8 1.1E-15 2.5E-20 163.0 53.0 245 246-502 386-661 (987)
18 PRK15174 Vi polysaccharide exp 99.8 1E-16 2.2E-21 167.2 41.7 325 86-439 47-380 (656)
19 PRK15174 Vi polysaccharide exp 99.8 1.8E-16 4E-21 165.3 41.8 325 17-369 48-380 (656)
20 PRK14574 hmsH outer membrane p 99.8 3.4E-15 7.4E-20 156.1 51.0 435 8-477 31-512 (822)
21 PRK10049 pgaA outer membrane p 99.8 1.3E-15 2.9E-20 162.4 46.5 431 7-490 11-466 (765)
22 TIGR00990 3a0801s09 mitochondr 99.8 9.1E-16 2E-20 160.7 42.7 400 84-503 130-561 (615)
23 PRK10049 pgaA outer membrane p 99.8 9.2E-16 2E-20 163.5 42.9 396 49-504 18-447 (765)
24 KOG2002 TPR-containing nuclear 99.8 6.2E-15 1.4E-19 147.6 39.4 458 8-491 267-758 (1018)
25 KOG2002 TPR-containing nuclear 99.7 1.5E-13 3.3E-18 137.8 42.0 431 61-502 252-734 (1018)
26 KOG4422 Uncharacterized conser 99.7 4.6E-13 9.9E-18 122.4 39.5 306 46-371 116-463 (625)
27 KOG2003 TPR repeat-containing 99.7 1.5E-13 3.3E-18 126.3 35.7 475 9-501 199-711 (840)
28 PRK14574 hmsH outer membrane p 99.7 1.2E-12 2.5E-17 137.3 47.1 421 47-504 36-504 (822)
29 KOG4422 Uncharacterized conser 99.7 1.7E-13 3.6E-18 125.2 34.4 381 81-489 116-563 (625)
30 KOG0495 HAT repeat protein [RN 99.7 2.5E-11 5.4E-16 117.0 44.4 454 23-502 388-869 (913)
31 KOG1915 Cell cycle control pro 99.7 2.6E-11 5.6E-16 112.6 41.8 435 21-492 83-548 (677)
32 KOG0495 HAT repeat protein [RN 99.6 5E-10 1.1E-14 108.2 47.5 447 26-501 361-834 (913)
33 KOG2003 TPR repeat-containing 99.6 1.7E-12 3.8E-17 119.4 28.2 409 17-464 243-709 (840)
34 KOG2076 RNA polymerase III tra 99.6 1.1E-10 2.3E-15 117.1 42.9 318 11-335 139-510 (895)
35 KOG0547 Translocase of outer m 99.6 2.3E-11 5E-16 113.3 32.9 218 246-476 336-564 (606)
36 PRK10747 putative protoheme IX 99.6 1.1E-11 2.4E-16 122.0 32.8 277 129-435 97-385 (398)
37 KOG1155 Anaphase-promoting com 99.6 4.4E-10 9.6E-15 104.4 40.0 327 113-477 161-494 (559)
38 KOG1173 Anaphase-promoting com 99.6 2.4E-10 5.1E-15 108.8 38.2 468 10-495 15-533 (611)
39 TIGR00540 hemY_coli hemY prote 99.5 2.3E-11 4.9E-16 120.6 31.4 288 128-436 96-395 (409)
40 PF13429 TPR_15: Tetratricopep 99.5 6.2E-14 1.4E-18 131.9 11.3 191 239-435 81-272 (280)
41 KOG1126 DNA-binding cell divis 99.5 4.4E-12 9.5E-17 122.9 23.6 275 212-504 330-611 (638)
42 KOG2076 RNA polymerase III tra 99.5 5.4E-10 1.2E-14 112.1 38.4 325 125-476 148-510 (895)
43 PRK10747 putative protoheme IX 99.5 7.1E-11 1.5E-15 116.4 31.8 144 251-403 244-388 (398)
44 KOG1915 Cell cycle control pro 99.5 7.9E-09 1.7E-13 96.4 41.4 420 13-460 109-551 (677)
45 PF13429 TPR_15: Tetratricopep 99.5 9.6E-14 2.1E-18 130.6 9.6 228 235-476 43-275 (280)
46 KOG1155 Anaphase-promoting com 99.5 5.8E-10 1.3E-14 103.6 32.6 123 347-477 336-460 (559)
47 TIGR00540 hemY_coli hemY prote 99.5 2.1E-10 4.5E-15 113.7 32.3 300 190-503 73-389 (409)
48 KOG1126 DNA-binding cell divis 99.5 9.5E-12 2.1E-16 120.6 21.4 192 236-435 421-615 (638)
49 COG2956 Predicted N-acetylgluc 99.5 3.1E-10 6.6E-15 100.6 28.4 284 160-476 48-345 (389)
50 KOG4318 Bicoid mRNA stability 99.4 1.7E-09 3.7E-14 108.2 36.2 478 4-504 18-585 (1088)
51 COG2956 Predicted N-acetylgluc 99.4 6.1E-10 1.3E-14 98.8 29.1 298 47-404 37-346 (389)
52 KOG2376 Signal recognition par 99.4 3.5E-08 7.5E-13 94.8 40.2 458 12-500 13-508 (652)
53 KOG0547 Translocase of outer m 99.4 1E-08 2.2E-13 96.2 35.0 406 14-439 118-565 (606)
54 KOG3785 Uncharacterized conser 99.4 3.5E-08 7.7E-13 88.8 36.4 182 18-210 29-213 (557)
55 PF13041 PPR_2: PPR repeat fam 99.4 1.6E-12 3.4E-17 85.6 6.4 50 374-423 1-50 (50)
56 COG3071 HemY Uncharacterized e 99.4 5.2E-09 1.1E-13 95.9 31.1 280 60-368 99-388 (400)
57 KOG2047 mRNA splicing factor [ 99.4 1.8E-07 3.9E-12 90.8 41.6 333 149-493 250-631 (835)
58 COG3071 HemY Uncharacterized e 99.3 1.6E-08 3.4E-13 92.8 31.2 288 129-477 97-389 (400)
59 PF13041 PPR_2: PPR repeat fam 99.3 4.5E-12 9.7E-17 83.5 6.2 50 234-283 1-50 (50)
60 KOG2047 mRNA splicing factor [ 99.3 9.4E-07 2E-11 86.0 43.3 470 15-505 106-715 (835)
61 KOG4318 Bicoid mRNA stability 99.3 6.7E-09 1.5E-13 104.0 29.6 330 71-424 15-392 (1088)
62 PRK12370 invasion protein regu 99.3 3.3E-09 7.2E-14 109.4 28.5 197 286-495 319-520 (553)
63 KOG1173 Anaphase-promoting com 99.3 2.3E-08 4.9E-13 95.6 30.9 278 112-418 240-529 (611)
64 KOG1129 TPR repeat-containing 99.2 1.3E-09 2.7E-14 96.8 18.6 232 240-484 227-462 (478)
65 TIGR02521 type_IV_pilW type IV 99.2 4.8E-09 1E-13 96.0 23.9 200 236-476 31-230 (234)
66 KOG4162 Predicted calmodulin-b 99.2 3.4E-07 7.4E-12 91.0 37.1 380 110-503 317-773 (799)
67 TIGR02521 type_IV_pilW type IV 99.2 5.4E-09 1.2E-13 95.7 23.6 188 310-504 33-223 (234)
68 KOG1156 N-terminal acetyltrans 99.2 1.4E-06 3E-11 85.1 39.4 438 7-480 3-470 (700)
69 PRK12370 invasion protein regu 99.2 1E-08 2.3E-13 105.7 25.9 170 321-499 317-490 (553)
70 KOG0985 Vesicle coat protein c 99.2 1.4E-06 3E-11 89.0 38.5 179 285-502 1089-1267(1666)
71 KOG3785 Uncharacterized conser 99.1 4.2E-07 9.2E-12 82.0 30.5 407 57-494 34-504 (557)
72 KOG1174 Anaphase-promoting com 99.1 4E-06 8.7E-11 77.5 36.2 193 239-476 303-498 (564)
73 KOG1840 Kinesin light chain [C 99.1 9.9E-09 2.1E-13 100.9 20.7 240 236-476 199-477 (508)
74 KOG1840 Kinesin light chain [C 99.1 1.2E-07 2.7E-12 93.3 26.3 252 112-403 195-477 (508)
75 KOG1156 N-terminal acetyltrans 99.1 1.2E-05 2.6E-10 78.7 38.1 415 8-435 38-506 (700)
76 PRK11189 lipoprotein NlpI; Pro 99.1 1.1E-07 2.3E-12 89.8 24.3 126 238-367 66-191 (296)
77 KOG1129 TPR repeat-containing 99.0 7.2E-08 1.6E-12 85.9 20.8 229 119-370 226-458 (478)
78 KOG3616 Selective LIM binding 99.0 1E-06 2.2E-11 87.0 29.9 196 243-475 739-934 (1636)
79 KOG2376 Signal recognition par 99.0 7.6E-06 1.6E-10 79.3 35.1 433 6-476 41-518 (652)
80 KOG4162 Predicted calmodulin-b 99.0 1.9E-06 4.1E-11 85.9 31.3 204 7-211 319-542 (799)
81 PF12569 NARP1: NMDA receptor- 99.0 6.1E-07 1.3E-11 89.6 28.6 125 275-402 198-331 (517)
82 PRK11189 lipoprotein NlpI; Pro 99.0 2.9E-07 6.3E-12 86.8 24.2 230 249-489 39-275 (296)
83 KOG1174 Anaphase-promoting com 99.0 1.3E-05 2.8E-10 74.2 32.7 255 232-500 228-487 (564)
84 PF12569 NARP1: NMDA receptor- 98.9 1.2E-06 2.6E-11 87.5 28.1 290 124-435 12-329 (517)
85 KOG1127 TPR repeat-containing 98.9 2.2E-06 4.8E-11 87.6 29.7 197 13-211 494-700 (1238)
86 COG3063 PilF Tfp pilus assembl 98.9 9.4E-07 2E-11 75.4 22.1 193 275-476 39-234 (250)
87 COG3063 PilF Tfp pilus assembl 98.9 1.2E-06 2.6E-11 74.7 21.9 194 239-439 38-234 (250)
88 KOG0624 dsRNA-activated protei 98.9 1.9E-05 4.1E-10 71.4 30.4 184 246-435 165-365 (504)
89 cd05804 StaR_like StaR_like; a 98.9 4.8E-06 1E-10 81.7 30.2 94 273-369 116-214 (355)
90 PF04733 Coatomer_E: Coatomer 98.8 2.9E-07 6.3E-12 85.5 17.7 246 158-439 12-263 (290)
91 KOG3616 Selective LIM binding 98.8 2.1E-05 4.5E-10 78.0 29.9 167 16-205 620-788 (1636)
92 KOG0985 Vesicle coat protein c 98.7 0.00053 1.2E-08 70.9 41.5 346 102-501 968-1330(1666)
93 PF12854 PPR_1: PPR repeat 98.7 1.5E-08 3.3E-13 59.6 3.9 32 371-402 2-33 (34)
94 PRK04841 transcriptional regul 98.7 7.9E-05 1.7E-09 83.0 36.2 370 13-405 343-760 (903)
95 PF12854 PPR_1: PPR repeat 98.7 1.8E-08 4E-13 59.3 4.0 33 111-143 2-34 (34)
96 cd05804 StaR_like StaR_like; a 98.7 6.7E-05 1.5E-09 73.6 31.8 195 8-207 3-211 (355)
97 KOG3617 WD40 and TPR repeat-co 98.7 0.00026 5.6E-09 71.5 34.6 137 20-173 737-884 (1416)
98 PF04733 Coatomer_E: Coatomer 98.7 9.1E-07 2E-11 82.3 16.8 254 19-300 9-265 (290)
99 KOG1125 TPR repeat-containing 98.7 3.9E-06 8.4E-11 81.1 21.0 247 246-503 295-561 (579)
100 KOG4340 Uncharacterized conser 98.7 9.6E-05 2.1E-09 65.6 27.8 312 11-334 10-336 (459)
101 TIGR03302 OM_YfiO outer membra 98.7 2.5E-06 5.5E-11 78.0 18.9 185 235-439 32-230 (235)
102 KOG1914 mRNA cleavage and poly 98.7 0.00047 1E-08 66.5 36.1 416 44-477 18-500 (656)
103 KOG0624 dsRNA-activated protei 98.6 0.00032 7E-09 63.7 34.6 362 87-484 44-426 (504)
104 KOG1070 rRNA processing protei 98.6 1.7E-05 3.7E-10 84.1 25.5 230 268-505 1455-1692(1710)
105 KOG1070 rRNA processing protei 98.6 1.7E-05 3.6E-10 84.2 24.7 228 181-429 1457-1689(1710)
106 PRK04841 transcriptional regul 98.6 0.0001 2.2E-09 82.1 33.2 265 214-478 465-760 (903)
107 KOG0548 Molecular co-chaperone 98.6 8.5E-05 1.8E-09 71.5 26.4 104 18-126 9-114 (539)
108 KOG1127 TPR repeat-containing 98.6 0.0003 6.4E-09 72.7 30.8 439 26-476 473-994 (1238)
109 TIGR03302 OM_YfiO outer membra 98.6 6.9E-06 1.5E-10 75.2 18.3 187 270-478 32-232 (235)
110 KOG3617 WD40 and TPR repeat-co 98.5 8.4E-06 1.8E-10 81.7 18.6 132 308-472 912-1058(1416)
111 KOG1125 TPR repeat-containing 98.5 1.6E-05 3.6E-10 76.9 19.9 258 125-399 294-565 (579)
112 KOG1128 Uncharacterized conser 98.5 8.4E-06 1.8E-10 81.0 18.3 210 236-461 424-635 (777)
113 PRK10370 formate-dependent nit 98.5 2.7E-05 5.9E-10 68.3 19.4 101 235-339 72-175 (198)
114 KOG4340 Uncharacterized conser 98.5 3.6E-05 7.8E-10 68.3 19.4 320 75-435 4-334 (459)
115 PLN02789 farnesyltranstransfer 98.4 0.00015 3.2E-09 68.5 23.6 204 245-461 46-267 (320)
116 PRK15359 type III secretion sy 98.4 1.3E-05 2.9E-10 66.4 14.8 114 362-487 14-128 (144)
117 KOG1128 Uncharacterized conser 98.4 3.8E-05 8.3E-10 76.5 19.5 220 113-369 395-615 (777)
118 PRK14720 transcript cleavage f 98.4 0.00025 5.4E-09 74.9 26.1 90 235-343 115-204 (906)
119 KOG0548 Molecular co-chaperone 98.4 0.0011 2.3E-08 64.2 27.4 408 60-494 17-469 (539)
120 PRK10370 formate-dependent nit 98.4 7E-05 1.5E-09 65.8 18.5 122 354-484 52-178 (198)
121 COG4783 Putative Zn-dependent 98.3 0.00016 3.6E-09 69.0 21.0 149 315-488 313-463 (484)
122 PRK15359 type III secretion sy 98.3 3.5E-05 7.7E-10 63.9 14.4 104 236-343 24-127 (144)
123 TIGR00756 PPR pentatricopeptid 98.3 1.6E-06 3.5E-11 52.0 4.5 34 377-410 1-34 (35)
124 PRK15179 Vi polysaccharide bio 98.3 0.00019 4.2E-09 74.9 22.3 187 190-382 36-228 (694)
125 PLN02789 farnesyltranstransfer 98.2 0.00072 1.6E-08 64.0 23.3 205 280-496 46-267 (320)
126 COG5010 TadD Flp pilus assembl 98.2 0.00033 7.1E-09 61.6 18.9 156 275-435 70-226 (257)
127 TIGR00756 PPR pentatricopeptid 98.2 2.6E-06 5.7E-11 51.0 4.3 35 148-182 1-35 (35)
128 COG4783 Putative Zn-dependent 98.2 0.00022 4.9E-09 68.1 18.0 118 246-367 316-434 (484)
129 COG5010 TadD Flp pilus assembl 98.1 0.00024 5.1E-09 62.4 16.7 159 240-403 70-229 (257)
130 KOG3060 Uncharacterized conser 98.1 0.00094 2E-08 58.3 19.9 157 314-477 58-219 (289)
131 KOG3081 Vesicle coat complex C 98.1 0.0011 2.4E-08 58.4 20.2 140 278-428 115-258 (299)
132 KOG2053 Mitochondrial inherita 98.1 0.016 3.5E-07 59.9 39.6 419 23-486 21-510 (932)
133 PRK15179 Vi polysaccharide bio 98.1 0.00086 1.9E-08 70.2 23.2 160 304-476 82-243 (694)
134 PF13812 PPR_3: Pentatricopept 98.1 5.3E-06 1.1E-10 49.3 4.2 33 377-409 2-34 (34)
135 PRK14720 transcript cleavage f 98.1 0.0011 2.4E-08 70.2 23.6 222 8-247 28-268 (906)
136 PF13812 PPR_3: Pentatricopept 98.1 6.4E-06 1.4E-10 48.9 4.2 33 450-482 2-34 (34)
137 TIGR02552 LcrH_SycD type III s 98.1 0.00015 3.3E-09 59.7 13.6 102 377-486 18-120 (135)
138 KOG3060 Uncharacterized conser 98.0 0.0068 1.5E-07 53.1 22.8 184 250-439 26-219 (289)
139 KOG3081 Vesicle coat complex C 98.0 0.0026 5.7E-08 56.1 20.0 98 236-337 169-271 (299)
140 TIGR02552 LcrH_SycD type III s 98.0 0.00026 5.6E-09 58.2 13.2 104 236-343 17-120 (135)
141 PF09976 TPR_21: Tetratricopep 97.9 0.00044 9.4E-09 57.6 14.3 88 382-474 54-143 (145)
142 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00027 5.8E-09 68.2 14.3 115 316-435 177-292 (395)
143 PF09976 TPR_21: Tetratricopep 97.9 0.0002 4.4E-09 59.6 11.7 51 249-300 24-77 (145)
144 PF01535 PPR: PPR repeat; Int 97.9 1.6E-05 3.4E-10 46.0 3.6 31 377-407 1-31 (31)
145 PF07079 DUF1347: Protein of u 97.9 0.024 5.2E-07 54.1 40.3 441 21-490 16-531 (549)
146 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00043 9.2E-09 66.9 14.5 123 274-404 172-296 (395)
147 KOG1914 mRNA cleavage and poly 97.8 0.037 8.1E-07 54.0 42.3 452 7-475 16-536 (656)
148 KOG2041 WD40 repeat protein [G 97.8 0.046 9.9E-07 55.0 28.2 357 60-493 678-1066(1189)
149 PF01535 PPR: PPR repeat; Int 97.8 2.6E-05 5.7E-10 45.0 3.6 31 148-178 1-31 (31)
150 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00052 1.1E-08 54.9 12.4 26 379-404 79-104 (119)
151 PF14938 SNAP: Soluble NSF att 97.8 0.024 5.2E-07 53.2 25.1 88 348-435 162-261 (282)
152 PF14938 SNAP: Soluble NSF att 97.8 0.0067 1.5E-07 56.9 21.4 144 316-475 102-263 (282)
153 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00057 1.2E-08 54.6 12.0 102 239-340 5-108 (119)
154 PF10037 MRP-S27: Mitochondria 97.7 0.00077 1.7E-08 65.4 13.1 109 375-486 65-175 (429)
155 PF04840 Vps16_C: Vps16, C-ter 97.7 0.058 1.2E-06 51.1 29.3 129 343-500 179-307 (319)
156 KOG2280 Vacuolar assembly/sort 97.6 0.099 2.1E-06 53.2 30.6 98 109-207 425-532 (829)
157 KOG0553 TPR repeat-containing 97.6 0.00067 1.5E-08 60.9 10.6 95 351-453 91-186 (304)
158 PF08579 RPM2: Mitochondrial r 97.6 0.0011 2.3E-08 50.3 9.9 76 348-423 32-116 (120)
159 cd00189 TPR Tetratricopeptide 97.6 0.0013 2.7E-08 49.8 11.1 92 379-476 3-95 (100)
160 PF10037 MRP-S27: Mitochondria 97.6 0.0014 3E-08 63.7 13.2 99 235-335 65-165 (429)
161 PF08579 RPM2: Mitochondrial r 97.5 0.0011 2.5E-08 50.1 9.4 86 151-247 29-115 (120)
162 PRK10866 outer membrane biogen 97.5 0.018 4E-07 52.3 19.3 173 242-435 38-236 (243)
163 cd00189 TPR Tetratricopeptide 97.5 0.0013 2.8E-08 49.7 10.3 96 239-338 3-98 (100)
164 PLN03088 SGT1, suppressor of 97.4 0.0028 6.1E-08 61.5 13.4 87 350-439 11-98 (356)
165 PF06239 ECSIT: Evolutionarily 97.4 0.0011 2.4E-08 56.9 9.1 91 353-465 64-154 (228)
166 KOG0553 TPR repeat-containing 97.4 0.0016 3.4E-08 58.6 10.2 99 316-418 89-189 (304)
167 PF05843 Suf: Suppressor of fo 97.4 0.0022 4.8E-08 59.9 11.8 80 95-175 50-135 (280)
168 PF05843 Suf: Suppressor of fo 97.3 0.0032 7E-08 58.8 12.3 94 324-420 52-149 (280)
169 PRK10153 DNA-binding transcrip 97.3 0.0073 1.6E-07 61.3 15.4 60 412-476 421-480 (517)
170 PLN03088 SGT1, suppressor of 97.3 0.0046 1E-07 60.0 13.5 99 317-418 11-110 (356)
171 KOG1538 Uncharacterized conser 97.3 0.057 1.2E-06 53.8 20.3 265 79-404 554-845 (1081)
172 PRK10866 outer membrane biogen 97.3 0.042 9.2E-07 50.0 18.8 55 243-297 182-238 (243)
173 PF12895 Apc3: Anaphase-promot 97.3 0.00052 1.1E-08 50.8 5.2 78 355-435 3-82 (84)
174 PRK15363 pathogenicity island 97.3 0.0055 1.2E-07 50.2 11.3 88 382-476 41-130 (157)
175 CHL00033 ycf3 photosystem I as 97.3 0.006 1.3E-07 52.3 12.4 54 351-404 45-100 (168)
176 PF12688 TPR_5: Tetratrico pep 97.3 0.012 2.6E-07 46.5 12.8 93 382-476 7-102 (120)
177 PRK02603 photosystem I assembl 97.2 0.01 2.2E-07 51.1 13.5 93 379-476 38-147 (172)
178 PRK02603 photosystem I assembl 97.2 0.012 2.6E-07 50.6 13.9 90 236-328 35-126 (172)
179 COG3898 Uncharacterized membra 97.2 0.19 4E-06 47.3 27.4 299 149-483 84-397 (531)
180 PF12895 Apc3: Anaphase-promot 97.2 0.00047 1E-08 51.1 4.3 79 321-401 2-83 (84)
181 PRK10803 tol-pal system protei 97.2 0.0054 1.2E-07 56.2 11.7 100 239-340 146-249 (263)
182 KOG2041 WD40 repeat protein [G 97.2 0.24 5.1E-06 50.1 23.2 120 43-172 689-821 (1189)
183 PRK10153 DNA-binding transcrip 97.2 0.012 2.7E-07 59.7 15.3 89 358-453 401-490 (517)
184 COG4700 Uncharacterized protei 97.2 0.042 9.1E-07 45.9 15.3 133 233-366 86-218 (251)
185 COG4700 Uncharacterized protei 97.2 0.052 1.1E-06 45.4 15.7 101 374-476 87-187 (251)
186 KOG1538 Uncharacterized conser 97.2 0.052 1.1E-06 54.1 18.4 217 104-370 623-846 (1081)
187 CHL00033 ycf3 photosystem I as 97.1 0.0075 1.6E-07 51.7 11.4 64 273-336 37-100 (168)
188 KOG2053 Mitochondrial inherita 97.1 0.5 1.1E-05 49.5 44.0 193 14-211 44-255 (932)
189 PF06239 ECSIT: Evolutionarily 97.1 0.0054 1.2E-07 52.8 9.5 116 361-500 34-154 (228)
190 PRK15363 pathogenicity island 97.0 0.0092 2E-07 48.9 10.3 85 281-368 45-130 (157)
191 KOG0550 Molecular chaperone (D 97.0 0.03 6.5E-07 52.8 14.8 153 280-439 178-349 (486)
192 PF13525 YfiO: Outer membrane 97.0 0.031 6.8E-07 49.4 14.2 165 245-430 14-197 (203)
193 PF12688 TPR_5: Tetratrico pep 96.9 0.033 7.1E-07 44.0 12.2 90 243-332 8-99 (120)
194 COG4235 Cytochrome c biogenesi 96.9 0.051 1.1E-06 49.4 14.7 114 373-494 153-270 (287)
195 PF13414 TPR_11: TPR repeat; P 96.9 0.0033 7.1E-08 44.4 5.9 25 239-263 6-30 (69)
196 PF13432 TPR_16: Tetratricopep 96.9 0.003 6.4E-08 44.0 5.6 24 274-297 34-57 (65)
197 COG4235 Cytochrome c biogenesi 96.9 0.058 1.2E-06 49.1 14.9 111 235-349 155-268 (287)
198 PF13414 TPR_11: TPR repeat; P 96.8 0.0048 1E-07 43.5 6.5 63 375-439 2-66 (69)
199 PF14559 TPR_19: Tetratricopep 96.8 0.0024 5.2E-08 44.9 4.8 19 277-295 31-49 (68)
200 PF13432 TPR_16: Tetratricopep 96.8 0.0048 1E-07 42.9 6.2 54 350-404 6-59 (65)
201 PF14559 TPR_19: Tetratricopep 96.8 0.0046 1E-07 43.4 6.2 59 353-414 3-61 (68)
202 KOG1130 Predicted G-alpha GTPa 96.8 0.025 5.3E-07 53.2 12.1 130 310-439 197-343 (639)
203 PRK10803 tol-pal system protei 96.8 0.022 4.8E-07 52.2 12.0 86 319-404 154-245 (263)
204 KOG0550 Molecular chaperone (D 96.8 0.23 5E-06 47.1 18.3 275 215-500 63-373 (486)
205 PF04840 Vps16_C: Vps16, C-ter 96.7 0.55 1.2E-05 44.6 32.5 108 237-364 178-285 (319)
206 PF13525 YfiO: Outer membrane 96.6 0.16 3.5E-06 44.9 15.7 65 277-341 11-75 (203)
207 smart00299 CLH Clathrin heavy 96.4 0.26 5.7E-06 40.5 15.0 126 14-158 10-136 (140)
208 smart00299 CLH Clathrin heavy 96.3 0.23 4.9E-06 40.9 14.4 127 344-496 10-137 (140)
209 PF12921 ATP13: Mitochondrial 96.3 0.061 1.3E-06 43.0 10.3 56 442-497 45-101 (126)
210 PF03704 BTAD: Bacterial trans 96.3 0.052 1.1E-06 45.1 10.2 64 349-413 70-138 (146)
211 COG5107 RNA14 Pre-mRNA 3'-end 96.3 1.2 2.6E-05 43.0 29.0 83 78-161 39-123 (660)
212 PF13371 TPR_9: Tetratricopept 96.1 0.035 7.6E-07 39.5 7.2 56 281-339 5-60 (73)
213 PF13371 TPR_9: Tetratricopept 96.0 0.05 1.1E-06 38.7 7.7 54 350-404 4-57 (73)
214 KOG2280 Vacuolar assembly/sort 96.0 2.4 5.3E-05 43.8 27.5 100 4-106 425-532 (829)
215 PF12921 ATP13: Mitochondrial 95.9 0.097 2.1E-06 41.8 9.6 86 376-463 2-102 (126)
216 PF07079 DUF1347: Protein of u 95.9 1.8 3.9E-05 41.9 40.0 402 13-455 48-531 (549)
217 PF13424 TPR_12: Tetratricopep 95.7 0.035 7.6E-07 40.2 6.0 62 377-438 6-73 (78)
218 KOG2796 Uncharacterized conser 95.7 1.4 3.1E-05 39.3 21.6 147 238-417 179-325 (366)
219 KOG2796 Uncharacterized conser 95.7 1.5 3.2E-05 39.3 20.3 235 83-345 71-323 (366)
220 COG3898 Uncharacterized membra 95.6 2.1 4.6E-05 40.6 30.6 293 84-410 85-397 (531)
221 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.13 2.8E-06 50.0 10.6 62 342-405 76-141 (453)
222 PF03704 BTAD: Bacterial trans 95.5 0.52 1.1E-05 39.1 12.9 60 238-298 64-123 (146)
223 COG1729 Uncharacterized protei 95.4 0.23 4.9E-06 44.8 10.8 103 238-341 144-248 (262)
224 PF13281 DUF4071: Domain of un 95.4 2.8 6E-05 40.4 19.7 73 120-192 145-227 (374)
225 PF08631 SPO22: Meiosis protei 95.3 2.6 5.7E-05 39.4 25.6 96 239-337 39-150 (278)
226 PF09205 DUF1955: Domain of un 95.2 1.2 2.5E-05 35.3 13.8 83 212-300 67-149 (161)
227 PF13424 TPR_12: Tetratricopep 95.2 0.042 9.1E-07 39.8 4.9 29 376-404 46-74 (78)
228 KOG3941 Intermediate in Toll s 95.0 0.13 2.7E-06 46.2 7.9 74 354-427 85-174 (406)
229 PF04053 Coatomer_WDAD: Coatom 94.9 0.46 1E-05 47.3 12.6 128 184-334 297-428 (443)
230 COG4105 ComL DNA uptake lipopr 94.9 2.7 5.9E-05 37.7 19.8 66 200-265 33-100 (254)
231 PF04053 Coatomer_WDAD: Coatom 94.9 0.4 8.6E-06 47.8 12.0 105 274-405 298-402 (443)
232 PLN03098 LPA1 LOW PSII ACCUMUL 94.9 0.37 8.1E-06 46.9 11.3 67 270-336 74-140 (453)
233 PRK15331 chaperone protein Sic 94.9 1.9 4.2E-05 35.8 14.2 86 281-369 47-133 (165)
234 PRK15331 chaperone protein Sic 94.8 0.34 7.3E-06 40.2 9.5 88 245-336 46-133 (165)
235 PF10300 DUF3808: Protein of u 94.8 1.3 2.7E-05 45.0 15.6 159 275-435 192-371 (468)
236 KOG0543 FKBP-type peptidyl-pro 94.8 0.7 1.5E-05 44.0 12.5 93 378-476 259-353 (397)
237 COG1729 Uncharacterized protei 94.6 0.36 7.7E-06 43.5 9.9 97 273-370 144-244 (262)
238 KOG1130 Predicted G-alpha GTPa 94.6 0.53 1.1E-05 44.7 11.2 132 273-404 197-343 (639)
239 KOG0543 FKBP-type peptidyl-pro 94.6 1.3 2.8E-05 42.3 13.9 62 238-300 259-320 (397)
240 KOG1585 Protein required for f 94.6 2.4 5.2E-05 37.6 14.3 139 347-502 97-245 (308)
241 PF13512 TPR_18: Tetratricopep 94.6 0.93 2E-05 36.7 11.2 59 282-340 21-79 (142)
242 PF13512 TPR_18: Tetratricopep 94.6 1.7 3.6E-05 35.3 12.6 74 245-320 19-94 (142)
243 PF09205 DUF1955: Domain of un 94.5 1.9 4E-05 34.2 13.1 58 377-435 87-144 (161)
244 COG5107 RNA14 Pre-mRNA 3'-end 94.5 5 0.00011 39.0 35.5 147 344-499 400-550 (660)
245 KOG3941 Intermediate in Toll s 94.3 0.28 6.1E-06 44.0 8.3 101 373-476 64-186 (406)
246 KOG1920 IkappaB kinase complex 94.3 10 0.00022 41.7 22.6 152 130-333 894-1051(1265)
247 PRK11906 transcriptional regul 94.3 2 4.4E-05 42.1 14.8 143 324-475 274-433 (458)
248 COG4785 NlpI Lipoprotein NlpI, 94.2 2.6 5.7E-05 36.6 13.5 158 9-176 97-266 (297)
249 COG4105 ComL DNA uptake lipopr 94.2 4.1 8.8E-05 36.6 18.5 59 282-340 45-103 (254)
250 PF04184 ST7: ST7 protein; In 94.1 2.1 4.6E-05 42.2 14.4 59 416-476 264-322 (539)
251 PF10300 DUF3808: Protein of u 94.0 3.7 8E-05 41.7 16.9 161 310-477 190-375 (468)
252 KOG1941 Acetylcholine receptor 93.8 6 0.00013 37.3 20.4 202 237-439 44-274 (518)
253 PF00637 Clathrin: Region in C 93.7 0.0024 5.2E-08 53.0 -5.5 129 346-499 12-140 (143)
254 KOG2610 Uncharacterized conser 93.6 3.1 6.7E-05 38.7 13.7 86 353-439 187-275 (491)
255 KOG2610 Uncharacterized conser 93.6 1.6 3.4E-05 40.5 11.8 153 320-476 115-274 (491)
256 KOG1941 Acetylcholine receptor 93.4 1.3 2.9E-05 41.4 11.2 228 248-476 18-273 (518)
257 COG0457 NrfG FOG: TPR repeat [ 93.3 5.7 0.00012 35.3 26.9 222 249-477 36-264 (291)
258 KOG1920 IkappaB kinase complex 93.1 16 0.00036 40.3 22.6 78 384-475 973-1052(1265)
259 PF13428 TPR_14: Tetratricopep 93.1 0.32 6.9E-06 30.4 5.0 39 450-490 2-41 (44)
260 PF13428 TPR_14: Tetratricopep 93.1 0.29 6.2E-06 30.6 4.8 40 12-52 2-41 (44)
261 PF08631 SPO22: Meiosis protei 93.0 7.9 0.00017 36.2 23.8 127 159-300 5-150 (278)
262 COG3118 Thioredoxin domain-con 92.9 7.5 0.00016 35.8 14.9 120 212-336 145-264 (304)
263 KOG4555 TPR repeat-containing 92.2 1.8 3.8E-05 34.2 8.7 88 281-371 53-145 (175)
264 KOG2066 Vacuolar assembly/sort 92.2 17 0.00037 38.2 26.6 102 88-194 363-467 (846)
265 KOG4555 TPR repeat-containing 92.1 1.8 4E-05 34.1 8.7 53 350-403 52-104 (175)
266 PF13170 DUF4003: Protein of u 92.1 11 0.00023 35.5 16.0 83 97-181 78-177 (297)
267 PRK11906 transcriptional regul 91.8 7.6 0.00016 38.3 14.6 135 356-498 273-422 (458)
268 COG4649 Uncharacterized protei 91.5 7.5 0.00016 32.6 12.7 19 282-300 69-87 (221)
269 PF04184 ST7: ST7 protein; In 91.4 17 0.00036 36.3 17.1 138 158-298 179-322 (539)
270 PF13281 DUF4071: Domain of un 91.1 15 0.00033 35.5 22.7 98 241-340 146-258 (374)
271 COG0457 NrfG FOG: TPR repeat [ 91.0 11 0.00023 33.5 26.5 198 236-439 59-264 (291)
272 COG3629 DnrI DNA-binding trans 90.9 2.3 5E-05 39.1 9.7 75 345-420 157-236 (280)
273 COG3118 Thioredoxin domain-con 90.8 13 0.00029 34.2 17.0 119 280-403 143-263 (304)
274 cd00923 Cyt_c_Oxidase_Va Cytoc 90.7 1.3 2.9E-05 32.7 6.4 61 392-456 23-83 (103)
275 COG3629 DnrI DNA-binding trans 90.4 3 6.5E-05 38.4 10.0 76 413-493 155-236 (280)
276 PF13176 TPR_7: Tetratricopept 90.3 0.65 1.4E-05 27.4 3.9 25 379-403 2-26 (36)
277 PF00515 TPR_1: Tetratricopept 90.2 0.67 1.4E-05 26.8 3.9 27 378-404 3-29 (34)
278 PF02284 COX5A: Cytochrome c o 90.1 1.4 3.1E-05 33.0 6.2 60 394-457 28-87 (108)
279 PF13431 TPR_17: Tetratricopep 90.0 0.23 4.9E-06 29.0 1.7 25 445-469 8-33 (34)
280 PF13176 TPR_7: Tetratricopept 89.6 0.7 1.5E-05 27.3 3.7 26 451-476 1-26 (36)
281 KOG1258 mRNA processing protei 89.3 28 0.0006 35.5 33.4 127 45-175 44-179 (577)
282 PF07035 Mic1: Colon cancer-as 88.9 13 0.00028 31.3 15.2 101 223-335 16-116 (167)
283 PF10602 RPN7: 26S proteasome 88.7 2.8 6.1E-05 36.0 8.2 61 238-298 38-100 (177)
284 PF00515 TPR_1: Tetratricopept 88.3 0.98 2.1E-05 26.1 3.7 29 311-339 4-32 (34)
285 KOG4570 Uncharacterized conser 88.2 2.5 5.4E-05 38.9 7.6 48 96-143 115-162 (418)
286 PF11207 DUF2989: Protein of u 88.1 5.4 0.00012 34.5 9.2 81 387-469 118-198 (203)
287 KOG2114 Vacuolar assembly/sort 87.7 42 0.00091 35.8 32.4 173 13-206 336-514 (933)
288 COG2976 Uncharacterized protei 87.5 15 0.00033 31.6 11.3 20 279-298 97-116 (207)
289 KOG4570 Uncharacterized conser 87.5 9.3 0.0002 35.4 10.7 100 110-210 58-163 (418)
290 PF10602 RPN7: 26S proteasome 87.3 5.1 0.00011 34.4 8.9 57 347-403 42-100 (177)
291 PF09613 HrpB1_HrpK: Bacterial 87.1 16 0.00035 30.4 12.1 52 319-370 21-73 (160)
292 KOG1585 Protein required for f 86.9 22 0.00049 31.8 16.1 209 83-331 33-250 (308)
293 COG3947 Response regulator con 86.8 24 0.00051 32.5 12.7 60 151-211 283-342 (361)
294 PF07719 TPR_2: Tetratricopept 86.7 1.5 3.3E-05 25.1 3.9 27 378-404 3-29 (34)
295 PF09613 HrpB1_HrpK: Bacterial 85.9 19 0.00041 30.0 12.8 51 93-145 22-73 (160)
296 PF02259 FAT: FAT domain; Int 85.7 36 0.00078 33.0 18.2 67 410-477 145-212 (352)
297 PF07719 TPR_2: Tetratricopept 85.6 1.7 3.6E-05 24.9 3.7 29 311-339 4-32 (34)
298 PF13431 TPR_17: Tetratricopep 85.6 1.1 2.4E-05 26.1 2.7 22 375-396 12-33 (34)
299 PF11207 DUF2989: Protein of u 85.3 6.7 0.00014 34.0 8.4 81 246-328 117-198 (203)
300 COG4649 Uncharacterized protei 85.2 22 0.00047 30.0 14.5 121 318-439 68-194 (221)
301 KOG1464 COP9 signalosome, subu 84.8 30 0.00066 31.4 16.7 100 184-292 147-252 (440)
302 COG4455 ImpE Protein of avirul 84.8 11 0.00023 33.1 9.2 74 416-494 6-82 (273)
303 PF00637 Clathrin: Region in C 84.5 0.44 9.5E-06 39.3 1.0 85 86-173 12-96 (143)
304 PF13170 DUF4003: Protein of u 84.5 37 0.0008 32.0 18.8 139 163-318 78-227 (297)
305 PF06552 TOM20_plant: Plant sp 84.1 9.1 0.0002 32.5 8.4 60 359-422 53-124 (186)
306 KOG1464 COP9 signalosome, subu 84.0 33 0.00071 31.1 18.0 231 239-498 68-318 (440)
307 PF13929 mRNA_stabil: mRNA sta 83.9 36 0.00078 31.5 13.4 111 60-171 143-262 (292)
308 KOG0276 Vesicle coat complex C 83.7 26 0.00057 35.7 12.6 44 283-334 649-692 (794)
309 PF13374 TPR_10: Tetratricopep 83.7 2.7 5.8E-05 25.4 4.2 27 377-403 3-29 (42)
310 PF07035 Mic1: Colon cancer-as 83.5 26 0.00056 29.6 15.7 127 33-170 16-143 (167)
311 TIGR02561 HrpB1_HrpK type III 83.3 24 0.00052 29.0 11.8 63 93-157 22-86 (153)
312 TIGR02508 type_III_yscG type I 82.9 14 0.00029 27.8 7.8 87 96-186 20-106 (115)
313 PF11663 Toxin_YhaV: Toxin wit 82.4 1.4 3E-05 35.0 2.9 36 458-495 104-139 (140)
314 PF04097 Nic96: Nup93/Nic96; 81.9 75 0.0016 33.7 22.0 45 13-58 113-157 (613)
315 KOG0276 Vesicle coat complex C 81.8 19 0.00042 36.6 10.9 45 247-297 648-692 (794)
316 cd00923 Cyt_c_Oxidase_Va Cytoc 81.3 12 0.00025 28.0 7.0 45 63-108 25-69 (103)
317 PF02284 COX5A: Cytochrome c o 81.3 21 0.00046 27.0 9.5 63 60-124 25-87 (108)
318 TIGR03504 FimV_Cterm FimV C-te 81.0 2.4 5.2E-05 26.4 3.0 21 189-209 6-26 (44)
319 PF13181 TPR_8: Tetratricopept 80.7 2.6 5.7E-05 24.1 3.1 27 378-404 3-29 (34)
320 PF13374 TPR_10: Tetratricopep 80.6 3.7 7.9E-05 24.8 4.0 29 11-39 2-30 (42)
321 PF13174 TPR_6: Tetratricopept 80.4 2.5 5.3E-05 23.9 2.9 25 315-339 7-31 (33)
322 KOG4648 Uncharacterized conser 80.2 11 0.00024 35.3 8.2 54 316-369 105-159 (536)
323 PF13181 TPR_8: Tetratricopept 79.5 3 6.5E-05 23.9 3.1 26 311-336 4-29 (34)
324 PF07721 TPR_4: Tetratricopept 79.4 2.3 5E-05 22.8 2.4 24 12-35 2-25 (26)
325 KOG4648 Uncharacterized conser 78.8 14 0.00029 34.7 8.3 93 278-375 104-197 (536)
326 KOG0991 Replication factor C, 77.7 52 0.0011 29.4 11.9 137 348-496 137-284 (333)
327 KOG4077 Cytochrome c oxidase, 77.2 13 0.00027 29.3 6.4 59 394-456 67-125 (149)
328 KOG4234 TPR repeat-containing 77.1 28 0.0006 30.1 9.0 85 318-404 105-196 (271)
329 TIGR02561 HrpB1_HrpK type III 76.6 41 0.00089 27.6 10.4 50 321-370 23-73 (153)
330 KOG2063 Vacuolar assembly/sort 76.3 1.3E+02 0.0027 33.1 17.3 39 245-283 600-638 (877)
331 PF13174 TPR_6: Tetratricopept 75.5 4.1 8.9E-05 23.0 2.9 28 13-40 2-29 (33)
332 KOG2114 Vacuolar assembly/sort 75.2 1.2E+02 0.0027 32.5 28.9 149 10-173 363-516 (933)
333 TIGR03504 FimV_Cterm FimV C-te 75.2 5.9 0.00013 24.7 3.5 26 16-41 4-29 (44)
334 PF07575 Nucleopor_Nup85: Nup8 75.0 54 0.0012 34.5 12.8 24 46-69 149-172 (566)
335 COG4455 ImpE Protein of avirul 74.6 17 0.00037 31.9 7.3 59 241-300 6-64 (273)
336 KOG2471 TPR repeat-containing 74.3 94 0.002 31.1 12.8 284 212-499 28-384 (696)
337 KOG1586 Protein required for f 74.3 65 0.0014 28.8 16.9 22 279-300 162-183 (288)
338 PF09477 Type_III_YscG: Bacter 74.0 37 0.00081 26.0 8.0 81 94-177 19-99 (116)
339 PF04097 Nic96: Nup93/Nic96; 73.2 1.3E+02 0.0029 31.9 23.9 353 115-484 111-537 (613)
340 TIGR02508 type_III_yscG type I 73.0 38 0.00083 25.6 8.0 58 350-414 48-105 (115)
341 PF13762 MNE1: Mitochondrial s 72.5 52 0.0011 27.0 9.3 51 145-195 77-128 (145)
342 COG4785 NlpI Lipoprotein NlpI, 72.4 69 0.0015 28.3 15.8 64 236-300 99-162 (297)
343 KOG1586 Protein required for f 72.2 73 0.0016 28.5 13.7 19 125-143 23-41 (288)
344 PF10345 Cohesin_load: Cohesin 70.7 1.5E+02 0.0033 31.5 32.5 125 16-142 105-251 (608)
345 COG2976 Uncharacterized protei 70.7 71 0.0015 27.7 13.3 124 198-337 50-188 (207)
346 PF10345 Cohesin_load: Cohesin 69.6 1.6E+02 0.0035 31.3 39.8 181 29-211 39-254 (608)
347 KOG0890 Protein kinase of the 69.4 2.8E+02 0.0061 34.1 22.8 304 152-478 1388-1731(2382)
348 PF06552 TOM20_plant: Plant sp 69.0 68 0.0015 27.4 9.4 114 164-300 8-136 (186)
349 KOG4234 TPR repeat-containing 68.9 44 0.00095 29.0 8.3 86 246-339 105-199 (271)
350 KOG1550 Extracellular protein 68.4 1.6E+02 0.0034 30.9 17.3 15 285-299 263-277 (552)
351 COG2909 MalT ATP-dependent tra 67.9 1.9E+02 0.0041 31.5 24.4 196 282-482 426-651 (894)
352 smart00028 TPR Tetratricopepti 66.3 11 0.00025 20.2 3.5 25 312-336 5-29 (34)
353 PRK11619 lytic murein transgly 66.0 1.9E+02 0.0041 30.9 35.3 115 250-368 255-373 (644)
354 KOG0376 Serine-threonine phosp 65.3 21 0.00045 35.4 6.6 105 316-424 12-118 (476)
355 PF10366 Vps39_1: Vacuolar sor 64.6 61 0.0013 25.1 8.0 28 237-264 40-67 (108)
356 PF07163 Pex26: Pex26 protein; 64.5 1.1E+02 0.0024 28.2 10.4 85 383-472 90-181 (309)
357 PRK09687 putative lyase; Provi 64.5 1.2E+02 0.0027 28.3 28.1 76 254-341 192-267 (280)
358 PF11663 Toxin_YhaV: Toxin wit 64.3 8.2 0.00018 30.8 3.1 32 353-386 107-138 (140)
359 PF13762 MNE1: Mitochondrial s 64.3 80 0.0017 25.9 9.5 82 378-462 41-128 (145)
360 PF10366 Vps39_1: Vacuolar sor 63.9 46 0.00099 25.8 7.1 27 149-175 41-67 (108)
361 PRK09687 putative lyase; Provi 63.8 1.3E+02 0.0028 28.2 26.1 233 43-318 34-277 (280)
362 KOG2396 HAT (Half-A-TPR) repea 63.7 1.7E+02 0.0037 29.5 29.5 86 407-499 455-545 (568)
363 cd08819 CARD_MDA5_2 Caspase ac 63.6 47 0.001 24.4 6.5 38 128-166 48-85 (88)
364 PF11848 DUF3368: Domain of un 63.0 32 0.0007 21.9 5.2 36 457-492 10-45 (48)
365 KOG4507 Uncharacterized conser 62.2 58 0.0013 33.3 9.0 105 71-177 200-313 (886)
366 KOG2396 HAT (Half-A-TPR) repea 61.6 1.9E+02 0.004 29.3 33.7 66 7-73 101-168 (568)
367 PF07575 Nucleopor_Nup85: Nup8 61.1 2.2E+02 0.0048 30.0 20.8 27 12-38 149-175 (566)
368 PF09986 DUF2225: Uncharacteri 61.1 87 0.0019 27.9 9.4 67 413-479 120-195 (214)
369 KOG1258 mRNA processing protei 59.4 2.2E+02 0.0048 29.4 35.4 403 14-426 48-490 (577)
370 COG3947 Response regulator con 59.2 1.5E+02 0.0033 27.5 17.1 69 413-486 281-355 (361)
371 PF07163 Pex26: Pex26 protein; 58.8 1.2E+02 0.0027 27.9 9.7 88 242-331 89-181 (309)
372 KOG0292 Vesicle coat complex C 58.4 18 0.0004 38.5 5.2 114 390-532 607-721 (1202)
373 COG1747 Uncharacterized N-term 58.2 2.2E+02 0.0047 29.0 23.5 23 536-560 636-658 (711)
374 PF13929 mRNA_stabil: mRNA sta 56.8 1.7E+02 0.0037 27.3 20.8 115 389-505 141-259 (292)
375 PF02259 FAT: FAT domain; Int 55.7 2E+02 0.0043 27.7 24.0 60 345-404 150-212 (352)
376 PF10579 Rapsyn_N: Rapsyn N-te 55.3 47 0.001 23.9 5.2 47 388-434 18-66 (80)
377 PF10579 Rapsyn_N: Rapsyn N-te 54.9 20 0.00043 25.7 3.4 16 284-299 19-34 (80)
378 KOG2063 Vacuolar assembly/sort 53.2 3.6E+02 0.0077 29.9 17.4 27 13-39 506-532 (877)
379 KOG1550 Extracellular protein 52.9 3E+02 0.0064 28.9 19.7 46 216-264 227-277 (552)
380 PF11848 DUF3368: Domain of un 51.9 60 0.0013 20.6 5.1 33 387-419 13-45 (48)
381 COG5108 RPO41 Mitochondrial DN 51.6 76 0.0017 33.0 8.0 74 416-493 33-112 (1117)
382 PF14853 Fis1_TPR_C: Fis1 C-te 50.8 66 0.0014 21.1 5.1 30 383-414 8-37 (53)
383 PF11846 DUF3366: Domain of un 50.4 79 0.0017 27.5 7.5 33 372-404 140-172 (193)
384 PF04190 DUF410: Protein of un 50.1 2.1E+02 0.0046 26.4 18.3 26 235-260 89-114 (260)
385 KOG4077 Cytochrome c oxidase, 49.6 1.3E+02 0.0029 23.9 8.0 50 60-110 64-113 (149)
386 PF14689 SPOB_a: Sensor_kinase 48.7 25 0.00055 23.9 3.1 23 381-403 28-50 (62)
387 KOG0403 Neoplastic transformat 48.4 2.9E+02 0.0063 27.5 17.7 73 276-353 514-586 (645)
388 KOG4642 Chaperone-dependent E3 48.0 2.1E+02 0.0046 25.8 10.2 57 281-341 20-77 (284)
389 PRK10564 maltose regulon perip 47.7 36 0.00078 31.7 4.8 39 150-188 260-298 (303)
390 KOG2659 LisH motif-containing 47.5 2.1E+02 0.0045 25.6 9.9 64 42-108 22-91 (228)
391 PF00244 14-3-3: 14-3-3 protei 47.2 2.2E+02 0.0048 25.8 12.3 56 14-69 4-61 (236)
392 KOG0292 Vesicle coat complex C 46.7 1.8E+02 0.0039 31.6 10.0 174 159-370 605-782 (1202)
393 PF14689 SPOB_a: Sensor_kinase 46.6 60 0.0013 22.0 4.7 19 243-261 30-48 (62)
394 PF08424 NRDE-2: NRDE-2, neces 46.4 2.7E+02 0.0059 26.6 16.4 96 235-334 18-128 (321)
395 KOG0686 COP9 signalosome, subu 45.9 3.1E+02 0.0066 27.0 11.1 87 347-435 156-253 (466)
396 KOG2659 LisH motif-containing 45.1 2.1E+02 0.0046 25.6 8.9 20 384-403 72-91 (228)
397 smart00386 HAT HAT (Half-A-TPR 44.6 53 0.0011 17.9 3.8 27 356-383 2-28 (33)
398 PF09670 Cas_Cas02710: CRISPR- 44.1 3.3E+02 0.0071 26.9 12.0 53 352-405 142-198 (379)
399 PF14853 Fis1_TPR_C: Fis1 C-te 42.3 97 0.0021 20.3 5.4 36 14-51 4-39 (53)
400 PRK10564 maltose regulon perip 41.7 55 0.0012 30.5 5.0 45 374-418 254-299 (303)
401 COG2178 Predicted RNA-binding 41.7 2.4E+02 0.0051 24.6 9.9 17 460-476 132-148 (204)
402 PRK10941 hypothetical protein; 41.4 3E+02 0.0064 25.6 9.9 79 414-497 184-264 (269)
403 COG1747 Uncharacterized N-term 40.9 4.1E+02 0.0089 27.1 23.0 63 235-300 98-160 (711)
404 KOG0403 Neoplastic transformat 40.4 3.9E+02 0.0085 26.7 23.3 72 415-496 513-586 (645)
405 PF12862 Apc5: Anaphase-promot 39.4 1.6E+02 0.0034 21.9 6.8 54 158-211 9-70 (94)
406 KOG2066 Vacuolar assembly/sort 39.3 5.3E+02 0.011 27.9 26.3 96 54-159 364-467 (846)
407 PF11768 DUF3312: Protein of u 39.0 3.2E+02 0.0069 28.1 10.1 56 120-175 412-472 (545)
408 PF11846 DUF3366: Domain of un 37.9 1.3E+02 0.0028 26.2 6.8 35 305-339 141-175 (193)
409 COG0735 Fur Fe2+/Zn2+ uptake r 37.5 1.8E+02 0.0038 24.0 7.1 60 71-131 11-70 (145)
410 KOG1308 Hsp70-interacting prot 36.5 28 0.00062 32.8 2.4 95 388-488 126-221 (377)
411 KOG4642 Chaperone-dependent E3 36.4 3.3E+02 0.0072 24.7 9.8 84 246-335 20-105 (284)
412 cd00280 TRFH Telomeric Repeat 36.4 2.7E+02 0.0059 24.0 7.8 22 383-404 118-139 (200)
413 KOG0376 Serine-threonine phosp 36.2 60 0.0013 32.3 4.7 99 247-350 15-114 (476)
414 cd08326 CARD_CASP9 Caspase act 36.1 1.7E+02 0.0037 21.4 6.0 59 102-164 20-78 (84)
415 PF10255 Paf67: RNA polymerase 36.1 4.5E+02 0.0097 26.1 10.6 56 119-174 125-191 (404)
416 PF12862 Apc5: Anaphase-promot 35.3 1.9E+02 0.0041 21.5 6.8 23 382-404 47-69 (94)
417 PHA02875 ankyrin repeat protei 35.1 4.6E+02 0.01 26.0 15.7 194 225-435 19-223 (413)
418 PF08311 Mad3_BUB1_I: Mad3/BUB 35.0 2.3E+02 0.0051 22.6 8.1 42 359-400 81-123 (126)
419 PF08424 NRDE-2: NRDE-2, neces 34.8 4.2E+02 0.009 25.4 16.5 125 357-484 47-190 (321)
420 COG0735 Fur Fe2+/Zn2+ uptake r 34.8 2E+02 0.0044 23.6 7.0 47 150-196 23-69 (145)
421 KOG4507 Uncharacterized conser 34.7 5.5E+02 0.012 26.8 10.9 145 269-418 569-717 (886)
422 PHA02875 ankyrin repeat protei 34.4 4.8E+02 0.01 25.9 17.3 16 466-481 297-312 (413)
423 PF02184 HAT: HAT (Half-A-TPR) 34.2 96 0.0021 17.8 3.4 22 357-380 3-24 (32)
424 COG5108 RPO41 Mitochondrial DN 34.1 2.9E+02 0.0063 29.1 8.9 94 16-109 33-131 (1117)
425 PF11768 DUF3312: Protein of u 33.9 5.3E+02 0.011 26.6 10.7 56 379-435 411-468 (545)
426 KOG2034 Vacuolar sorting prote 33.5 6.9E+02 0.015 27.5 25.0 268 87-394 364-646 (911)
427 cd00280 TRFH Telomeric Repeat 33.0 2.5E+02 0.0054 24.2 7.1 22 348-369 118-139 (200)
428 KOG4279 Serine/threonine prote 32.6 6.7E+02 0.014 27.1 12.9 203 253-473 145-368 (1226)
429 COG2178 Predicted RNA-binding 32.3 3.4E+02 0.0074 23.6 9.2 69 98-175 20-97 (204)
430 PF11838 ERAP1_C: ERAP1-like C 31.9 4.5E+02 0.0098 24.9 23.3 85 347-436 175-262 (324)
431 cd08819 CARD_MDA5_2 Caspase ac 31.7 2.1E+02 0.0046 21.1 7.2 38 283-327 48-85 (88)
432 PF09454 Vps23_core: Vps23 cor 31.5 1.1E+02 0.0024 21.0 4.1 51 143-194 4-54 (65)
433 KOG2168 Cullins [Cell cycle co 31.5 7.3E+02 0.016 27.2 17.8 41 121-161 330-373 (835)
434 KOG4567 GTPase-activating prot 31.2 2.8E+02 0.006 26.2 7.6 76 66-147 264-349 (370)
435 PRK11639 zinc uptake transcrip 31.0 2E+02 0.0044 24.4 6.6 49 150-198 28-76 (169)
436 PF14432 DYW_deaminase: DYW fa 30.5 11 0.00025 29.5 -0.9 16 561-576 29-44 (116)
437 KOG0890 Protein kinase of the 30.2 1.2E+03 0.026 29.3 23.1 61 271-336 1670-1730(2382)
438 PF04190 DUF410: Protein of un 29.8 4.5E+02 0.0097 24.3 19.8 82 270-370 89-170 (260)
439 PF11817 Foie-gras_1: Foie gra 29.8 1.9E+02 0.004 26.5 6.7 51 383-433 185-240 (247)
440 PF07064 RIC1: RIC1; InterPro 29.6 4.5E+02 0.0099 24.2 12.9 59 416-476 184-247 (258)
441 PF09454 Vps23_core: Vps23 cor 29.5 1.6E+02 0.0034 20.3 4.6 50 374-424 6-55 (65)
442 PF07443 HARP: HepA-related pr 29.4 20 0.00042 23.6 0.2 33 463-495 6-38 (55)
443 PRK11639 zinc uptake transcrip 28.5 3.7E+02 0.008 22.8 8.1 62 71-133 16-77 (169)
444 KOG1114 Tripeptidyl peptidase 28.0 8.9E+02 0.019 27.1 13.6 52 235-286 1230-1282(1304)
445 PF14669 Asp_Glu_race_2: Putat 27.0 4.3E+02 0.0092 23.1 16.1 25 346-370 137-161 (233)
446 KOG4567 GTPase-activating prot 26.8 3.9E+02 0.0085 25.2 7.8 57 256-319 263-319 (370)
447 KOG0545 Aryl-hydrocarbon recep 26.8 5E+02 0.011 23.7 10.0 96 318-416 188-302 (329)
448 KOG3807 Predicted membrane pro 26.7 5.7E+02 0.012 24.4 12.0 47 387-435 286-335 (556)
449 PRK13342 recombination factor 26.3 6.7E+02 0.014 25.1 18.1 119 164-285 154-279 (413)
450 PRK08691 DNA polymerase III su 26.1 8.7E+02 0.019 26.3 11.4 33 451-484 248-280 (709)
451 PF12926 MOZART2: Mitotic-spin 25.3 2.8E+02 0.0061 20.4 6.9 41 66-107 29-69 (88)
452 PRK13342 recombination factor 25.0 7E+02 0.015 24.9 15.7 91 160-250 187-279 (413)
453 cd07153 Fur_like Ferric uptake 25.0 1.9E+02 0.0041 22.4 5.2 47 153-199 6-52 (116)
454 PF15297 CKAP2_C: Cytoskeleton 24.8 2.8E+02 0.0061 26.7 6.7 63 358-422 120-186 (353)
455 PF13934 ELYS: Nuclear pore co 24.1 5.3E+02 0.012 23.2 11.8 116 376-503 76-195 (226)
456 PRK06645 DNA polymerase III su 24.0 8.2E+02 0.018 25.3 11.9 23 159-181 269-291 (507)
457 PRK09857 putative transposase; 24.0 4.3E+02 0.0092 24.9 8.0 67 414-484 209-275 (292)
458 PF09477 Type_III_YscG: Bacter 24.0 3.5E+02 0.0075 21.0 8.2 76 391-476 21-96 (116)
459 PF11817 Foie-gras_1: Foie gra 23.8 2.6E+02 0.0056 25.5 6.5 59 415-475 182-244 (247)
460 KOG4814 Uncharacterized conser 23.6 7.5E+02 0.016 26.2 9.7 93 48-143 357-455 (872)
461 PF08311 Mad3_BUB1_I: Mad3/BUB 23.5 3.8E+02 0.0083 21.3 8.4 43 165-207 81-124 (126)
462 cd02680 MIT_calpain7_2 MIT: do 23.3 1.8E+02 0.0038 20.8 4.0 29 199-227 4-32 (75)
463 PF10475 DUF2450: Protein of u 22.9 6.4E+02 0.014 23.7 10.3 124 132-261 83-222 (291)
464 PRK10941 hypothetical protein; 22.6 6.3E+02 0.014 23.5 10.3 57 347-404 187-243 (269)
465 KOG2422 Uncharacterized conser 22.4 9E+02 0.02 25.3 16.1 144 184-339 286-450 (665)
466 KOG2062 26S proteasome regulat 22.4 1E+03 0.022 25.8 28.7 155 15-175 63-238 (929)
467 COG5116 RPN2 26S proteasome re 22.4 3.6E+02 0.0078 27.8 7.3 33 5-37 53-85 (926)
468 PF01475 FUR: Ferric uptake re 22.2 1.8E+02 0.0039 22.8 4.5 47 152-198 12-58 (120)
469 PF08780 NTase_sub_bind: Nucle 22.1 4.1E+02 0.0089 21.2 6.8 72 26-102 5-80 (124)
470 KOG1114 Tripeptidyl peptidase 22.1 1.1E+03 0.025 26.3 14.9 41 421-463 1241-1281(1304)
471 PF08771 Rapamycin_bind: Rapam 22.0 1.9E+02 0.0042 22.0 4.4 70 156-227 23-93 (100)
472 KOG1308 Hsp70-interacting prot 21.9 1.4E+02 0.0031 28.4 4.3 24 353-376 194-217 (377)
473 COG4941 Predicted RNA polymera 21.8 7.3E+02 0.016 23.9 11.2 111 62-176 273-394 (415)
474 TIGR01503 MthylAspMut_E methyl 21.7 8.5E+02 0.018 24.7 11.7 47 95-144 68-114 (480)
475 KOG2223 Uncharacterized conser 21.4 8.2E+02 0.018 24.4 10.1 42 102-143 460-501 (586)
476 PF09868 DUF2095: Uncharacteri 21.1 4.1E+02 0.0088 20.8 5.7 26 381-406 66-91 (128)
477 COG4003 Uncharacterized protei 21.1 3.3E+02 0.0071 19.7 5.3 26 381-406 36-61 (98)
478 KOG3364 Membrane protein invol 21.0 4.7E+02 0.01 21.4 9.1 72 268-340 29-103 (149)
479 KOG2471 TPR repeat-containing 21.0 9E+02 0.02 24.7 17.8 56 377-434 337-395 (696)
480 PRK07003 DNA polymerase III su 20.9 1.1E+03 0.025 25.9 11.0 46 357-404 180-226 (830)
481 PF10255 Paf67: RNA polymerase 20.9 2.1E+02 0.0045 28.4 5.4 63 273-335 124-191 (404)
482 cd07153 Fur_like Ferric uptake 20.5 2.9E+02 0.0062 21.4 5.4 47 242-288 6-52 (116)
483 PF11123 DNA_Packaging_2: DNA 20.5 3.1E+02 0.0067 19.4 4.5 48 357-416 13-60 (82)
484 PRK13184 pknD serine/threonine 20.4 1.3E+03 0.028 26.2 20.8 303 121-435 480-864 (932)
485 cd02679 MIT_spastin MIT: domai 20.1 2.9E+02 0.0063 19.9 4.7 16 249-264 52-67 (79)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-83 Score=694.23 Aligned_cols=549 Identities=21% Similarity=0.277 Sum_probs=464.1
Q ss_pred CCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhh
Q 008097 5 IQSPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYT 83 (577)
Q Consensus 5 ~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~ 83 (577)
.|..++..+++.|+..|++.|+++.|.++|+.|. .||+++||.+|.+|++. ++++|+++|+ .|...|+.||.+|
T Consensus 115 ~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~-~M~~~g~~Pd~~t 189 (857)
T PLN03077 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYH-RMLWAGVRPDVYT 189 (857)
T ss_pred cCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHH-HHHHcCCCCChhH
Confidence 3556777888999999999999999999999995 58999999999999999 9999999999 8999999999999
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCCh
Q 008097 84 YAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENL 163 (577)
Q Consensus 84 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 163 (577)
|++++++|+..+++..+.+++..|.+.|+.||..++|+||.+|+++|++++|.++|++|++||.++||+||.+|++.|++
T Consensus 190 ~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~ 269 (857)
T PLN03077 190 FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGEC 269 (857)
T ss_pred HHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh----------------hhcCChhHHHHHHHHH
Q 008097 164 VNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ----------------GRLGKVKGGCRFLKEM 227 (577)
Q Consensus 164 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------------~~~g~~~~a~~~~~~~ 227 (577)
++|+++|++|...|+.||..||+.++.+|++.|+.+.|.+++..+.+. .++|++++|.++|++|
T Consensus 270 ~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m 349 (857)
T PLN03077 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349 (857)
T ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999888775 5677777777777777
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCC
Q 008097 228 ERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGR 307 (577)
Q Consensus 228 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 307 (577)
.. ||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+. |..|+
T Consensus 350 ~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~~ 423 (857)
T PLN03077 350 ET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK--GLISY 423 (857)
T ss_pred CC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh--CCCcc
Confidence 53 4777777777777777777777777777777777777777777777666666666666666666665 55566
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCC---------------
Q 008097 308 ISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGG--------------- 372 (577)
Q Consensus 308 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------- 372 (577)
..+|++|+.+|++.|++++|.++|++|.+ ++..+|+.++.+|++.|+.++|..+|++|... +
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACA 500 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCCHhHHHHHHHHHh
Confidence 66666666666666666666666655543 34444444444444444444444444444321 1
Q ss_pred --------------------------------------------------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008097 373 --------------------------------------------------VPNVVIYDCLIHAYCQEERVREASELMKEM 402 (577)
Q Consensus 373 --------------------------------------------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (577)
.||..+||+||.+|+++|+.++|+++|++|
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467788999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 008097 403 TGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILP 482 (577)
Q Consensus 403 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 482 (577)
.+.|+.||..||++++.+|++.|++++|.++|+ .|. ..+|+.|+..||++|+++|+++|++++|.+++++|+ ++|
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~-~M~-~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~p 655 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFH-SME-EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITP 655 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH-HHH-HHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCC
Confidence 999999999999999999999999999999999 776 268999999999999999999999999999999994 999
Q ss_pred CHHHHHHHHHHHHhcchHHHHHH---------HHHHHHHHHHHhhhhhhhhHHH---HHhh---HhhhcCCCCccccccC
Q 008097 483 DYLTWNSLLICLSQQTTWLLLLL---------LNEMVSFVMVVHELSAKEKRCK---LRSL---NHLAHGAGSVWLGLRI 547 (577)
Q Consensus 483 ~~~~~~~ll~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~g~~~~~~~~ 547 (577)
|..+|++|+++|+.+++.++++. |.+...|++++|.|+..|+|++ +|+. +|++|.||+|||+ +
T Consensus 656 d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie--~ 733 (857)
T PLN03077 656 DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE--V 733 (857)
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE--E
Confidence 99999999999999999987653 3345679999999999999864 4554 3899999999995 6
Q ss_pred CCeeeEEEecch-------------------hccCccccccccccc
Q 008097 548 HDTTHTFIIDRR-------------------VEIGHVFCSSSSLKD 574 (577)
Q Consensus 548 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~ 574 (577)
++++|.|+++|+ ...||+++++.++++
T Consensus 734 ~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~ 779 (857)
T PLN03077 734 KGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDE 779 (857)
T ss_pred CCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccc
Confidence 999999999995 568999999998854
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.2e-76 Score=620.57 Aligned_cols=497 Identities=20% Similarity=0.264 Sum_probs=464.1
Q ss_pred CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhc-CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHH
Q 008097 43 TPSLKIFNSILDVLVKE-DIDLARAFYRKKMMAS-GVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYN 120 (577)
Q Consensus 43 ~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 120 (577)
.++..+|+.+|.++.+. ++++|+++|+ .|... +..||..+|+.++.+|++.++++.|.++|..|.+.|+.||..+|+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~-~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFE-ILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHH-HHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34667899999999999 9999999999 78765 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhH
Q 008097 121 TLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMD 200 (577)
Q Consensus 121 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 200 (577)
.|+++|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008097 201 AVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRG 280 (577)
Q Consensus 201 a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 280 (577)
+.++ +..+.+.|+.||..+||+||++|++.|++++|.++|++|. ++|..+|+++|.+
T Consensus 243 ~~~l-------------------~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~ 299 (697)
T PLN03081 243 GQQL-------------------HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAG 299 (697)
T ss_pred HHHH-------------------HHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHH
Confidence 8776 4567788999999999999999999999999999999996 5799999999999
Q ss_pred HHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCceehHHHHHHhhhcCCHH
Q 008097 281 LCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK--LFPRAVDRSLKILGFCVDGNVE 358 (577)
Q Consensus 281 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~ 358 (577)
|++.|+.++|.++|++|.+. |..||..+|++++.+|++.|++++|.+++..|.+ ..|+..+++.++++|+++|+++
T Consensus 300 y~~~g~~~eA~~lf~~M~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 300 YALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence 99999999999999999987 8999999999999999999999999999999987 4789999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 008097 359 DAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDM 438 (577)
Q Consensus 359 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m 438 (577)
+|.++|++|.+ ||..+||+||.+|+++|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+ .|
T Consensus 378 ~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~-~m 452 (697)
T PLN03081 378 DARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ-SM 452 (697)
T ss_pred HHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH-HH
Confidence 99999999964 89999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred cccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchHHHHHHH---------HHH
Q 008097 439 RGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWLLLLLL---------NEM 509 (577)
Q Consensus 439 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~---------~~~ 509 (577)
.. .+|+.|+..||++|+++|+++|++++|.+++++| +++|+..+|++|+++|+.+|+.++++.. .+.
T Consensus 453 ~~-~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~ 528 (697)
T PLN03081 453 SE-NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528 (697)
T ss_pred HH-hcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence 62 6899999999999999999999999999999988 5999999999999999999999876532 234
Q ss_pred HHHHHHHhhhhhhhhHHHHHh---h---HhhhcCCCCccccccCCCeeeEEEecch-------------------hccCc
Q 008097 510 VSFVMVVHELSAKEKRCKLRS---L---NHLAHGAGSVWLGLRIHDTTHTFIIDRR-------------------VEIGH 564 (577)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------------~~~~~ 564 (577)
..|+.+++.|...|+++++.+ . .|++|.||+|||+ +++++|+|+++|. .+.||
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~--~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy 606 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIE--VKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGY 606 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEE--ECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 579999999999999875444 2 3888999999995 5999999999985 45899
Q ss_pred ccccccccccCC
Q 008097 565 VFCSSSSLKDVD 576 (577)
Q Consensus 565 ~~~~~~~~~~~~ 576 (577)
+++++.++||+|
T Consensus 607 ~~~~~~~~~~~~ 618 (697)
T PLN03081 607 VAEENELLPDVD 618 (697)
T ss_pred CCCcchhhcccc
Confidence 999999999987
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.9e-70 Score=591.18 Aligned_cols=475 Identities=17% Similarity=0.168 Sum_probs=450.1
Q ss_pred CCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhh
Q 008097 5 IQSPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYT 83 (577)
Q Consensus 5 ~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~ 83 (577)
.|+.||..+++.|+.+|+++|++++|.++|+.|. .||.++||++|.+|++. ++++|+++|. .|...|+.||..|
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~-~M~~~g~~Pd~~t 290 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFF-TMRELSVDPDLMT 290 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHH-HHHHcCCCCChhH
Confidence 5788888999999999999999999999999995 58999999999999999 9999999999 8999999999999
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCCh
Q 008097 84 YAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENL 163 (577)
Q Consensus 84 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 163 (577)
|+.++.+|++.|+++.|.++|..|.+.|+.||..+||+|+.+|+++|++++|.++|++|.+||.++||++|.+|++.|++
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~ 370 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLP 370 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh----------------hhcCChhHHHHHHHHH
Q 008097 164 VNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ----------------GRLGKVKGGCRFLKEM 227 (577)
Q Consensus 164 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------------~~~g~~~~a~~~~~~~ 227 (577)
++|+++|++|...|+.||..||+.++.+|++.|+++.|.++++.+.+. .++|++++|.++|++|
T Consensus 371 ~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m 450 (857)
T PLN03077 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450 (857)
T ss_pred HHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999998876 7899999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCC
Q 008097 228 ERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGR 307 (577)
Q Consensus 228 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 307 (577)
.+ +|.++||++|.+|++.|+.++|+.+|++|.. +++||..||++++.+|++.|+++.+.+++..+.+. |..++
T Consensus 451 ~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~--g~~~~ 523 (857)
T PLN03077 451 PE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT--GIGFD 523 (857)
T ss_pred CC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh--CCCcc
Confidence 76 5999999999999999999999999999985 58999999999999999999999999999999988 89999
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 008097 308 ISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYC 387 (577)
Q Consensus 308 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 387 (577)
..++++|+++|++.|++++|.++|+.+ .|+..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||++++.+|+
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 999999999999999999999999998 78999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChh
Q 008097 388 QEERVREASELMKEMT-GHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQ 466 (577)
Q Consensus 388 ~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~ 466 (577)
+.|++++|.++|++|. +.|+.|+..+|+.++.+|++.|++++|.++++ .|. +.||..+|++|+.+|...|+.+
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~-~m~-----~~pd~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN-KMP-----ITPDPAVWGALLNACRIHRHVE 674 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH-HCC-----CCCCHHHHHHHHHHHHHcCChH
Confidence 9999999999999999 78999999999999999999999999999999 776 7899999999999998888888
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcchHHH
Q 008097 467 SASMLLVQMVGKGILPDY-LTWNSLLICLSQQTTWLL 502 (577)
Q Consensus 467 ~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~ 502 (577)
.+....+++.+ +.|+. ..|..|.+.|...|+|+.
T Consensus 675 ~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 675 LGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHH
Confidence 88888888774 56654 556666778888887753
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-68 Score=566.05 Aligned_cols=469 Identities=20% Similarity=0.234 Sum_probs=426.1
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhH
Q 008097 7 SPPDESIFITVIRGLGRARMINDVVKATDLVSRFNM-TPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTY 84 (577)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~ 84 (577)
..++...|..++..|++.|++++|+++|+.|.+.|+ .++...++.++.+|.+. ..++|..+|+ .|.. ||..+|
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~-~M~~----pd~~Ty 440 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAK-LIRN----PTLSTF 440 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHH-HcCC----CCHHHH
Confidence 456677899999999999999999999999999885 46788888999999998 9999999998 7753 999999
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhcc----CCCceeHHHHHHHHHhc
Q 008097 85 AILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDME----EPNDVTFSILICAYCKE 160 (577)
Q Consensus 85 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~ 160 (577)
+.+|.+|++.|+++.|.++|++|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||..+|++||.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999998 48999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHH--cCCCCChhh
Q 008097 161 ENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMER--KGCLPNVDT 238 (577)
Q Consensus 161 ~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~--~~~~p~~~~ 238 (577)
|++++|+++|++|...|+.||..||+.+|.+|++.|++++|.++| ++|.. .|+.||..+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf-------------------~eM~~~~~gi~PD~vT 581 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVL-------------------AEMKAETHPIDPDHIT 581 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH-------------------HHHHHhcCCCCCcHHH
Confidence 999999999999999999999999999999999999988888875 55554 578899999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL 318 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 318 (577)
|+++|.+|++.|++++|.++|++|.+.|++|+..+|+.+|.+|++.|++++|.++|+.|... |..||..+|+.++.+|
T Consensus 582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~--Gv~PD~~TynsLI~a~ 659 (1060)
T PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK--GVKPDEVFFSALVDVA 659 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987 8899999999999999
Q ss_pred HhcCCHHHHHHHHHHHhh--cCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 008097 319 YRENQQDEALEYLKQMEK--LFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREAS 396 (577)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 396 (577)
++.|++++|.++|++|.+ ..|+..+|+.++.+|+++|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|+
T Consensus 660 ~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAl 739 (1060)
T PLN03218 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL 739 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999987 468889999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHH----cC---------
Q 008097 397 ELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCE----KG--------- 463 (577)
Q Consensus 397 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~----~g--------- 463 (577)
++|++|.+.|+.||..||++++.+|++.|++++|.++|+ .|. ..|+.||..+|+++++.|.+ ++
T Consensus 740 elf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~-~M~--k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f 816 (1060)
T PLN03218 740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS-QAK--EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSF 816 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH-HHH--HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 999999999999999999999999999999999999999 787 78899999999999876432 22
Q ss_pred ----------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchHHHHH
Q 008097 464 ----------GFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWLLLL 504 (577)
Q Consensus 464 ----------~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 504 (577)
..++|..+|++|.+.|+.||..+|+.+|.+++..+..++..
T Consensus 817 ~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~ 867 (1060)
T PLN03218 817 DSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRN 867 (1060)
T ss_pred hccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHH
Confidence 23679999999999999999999999997777777665543
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-67 Score=557.51 Aligned_cols=481 Identities=21% Similarity=0.285 Sum_probs=445.8
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHH
Q 008097 7 SPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYA 85 (577)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~ 85 (577)
++++..+++.++..|.+.|.+++|.++|+.|. .|+..+||.+|.+|++. +++.|.++|+ .|.+.|+.||..+|+
T Consensus 402 v~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~-~M~~~Gl~pD~~tyn 476 (1060)
T PLN03218 402 LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLR-LVQEAGLKADCKLYT 476 (1060)
T ss_pred CCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHhCcCHHHHHHHHH-HHHHcCCCCCHHHHH
Confidence 56788889999999999999999999999995 49999999999999999 9999999999 899999999999999
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhcc----CCCceeHHHHHHHHHhcC
Q 008097 86 ILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDME----EPNDVTFSILICAYCKEE 161 (577)
Q Consensus 86 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~ 161 (577)
.+|.+|++.|+++.|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|. .||.++||.||.+|++.|
T Consensus 477 sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999999997 389999999999999999
Q ss_pred ChHHHHHHHHHHHh--CCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhH
Q 008097 162 NLVNALVLLEKSFS--FGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTY 239 (577)
Q Consensus 162 ~~~~A~~~~~~m~~--~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 239 (577)
++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++ |+.|.+.|+.|+..+|
T Consensus 557 ~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el-------------------f~~M~e~gi~p~~~ty 617 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV-------------------YQMIHEYNIKGTPEVY 617 (1060)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH-------------------HHHHHHcCCCCChHHH
Confidence 99999999999976 68999999999999999998888887776 6778889999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHH
Q 008097 240 NILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLY 319 (577)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 319 (577)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|+.|.+. +..|+..+|+++|.+|+
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~--G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ--GIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987 89999999999999999
Q ss_pred hcCCHHHHHHHHHHHhh--cCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008097 320 RENQQDEALEYLKQMEK--LFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASE 397 (577)
Q Consensus 320 ~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 397 (577)
+.|++++|.++|++|.+ ..|+..+|+.+|.+|++.|++++|.++|++|...|+.||..||++++.+|++.|++++|.+
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999976 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHhhcccCCCCCCCcccHHH
Q 008097 398 LMKEMTGHGYLPIASTFNTVLSGLCR----Q-------------------GNVGTALKLVEEDMRGIGRGSLPGSGHYSP 454 (577)
Q Consensus 398 ~~~~m~~~g~~p~~~~~~~ll~~~~~----~-------------------g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~ 454 (577)
+|.+|.+.|+.||..+|++++..|.+ + +..++|..+|+ .|. ..|+.||..+|+.
T Consensus 776 l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~-eM~--~~Gi~Pd~~T~~~ 852 (1060)
T PLN03218 776 LLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR-ETI--SAGTLPTMEVLSQ 852 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH-HHH--HCCCCCCHHHHHH
Confidence 99999999999999999999877542 1 22467999999 888 8899999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh
Q 008097 455 LIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWLLLLLLNEMVSFVMVVH 517 (577)
Q Consensus 455 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (577)
++.+++..+..+.+..+++.|...+..|+..+|++|+.+|+.. ..+...+.++|....+.++
T Consensus 853 vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~-~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 853 VLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY-DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred HHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC-hHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999998888889999999999999654 2345556667665544443
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-66 Score=549.58 Aligned_cols=526 Identities=17% Similarity=0.234 Sum_probs=436.8
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHH
Q 008097 10 DESIFITVIRGLGRARMINDVVKATDLVSRFN-MTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAIL 87 (577)
Q Consensus 10 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~l 87 (577)
+...++.+|..|.+.|++++|+++|+.|...+ ..|+..+|+.++.++.+. +++.+.+++. .|.+.|+.||..+|+.+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~-~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYW-HVESSGFEPDQYMMNRV 164 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHhCCCcchHHHHHH
Confidence 44579999999999999999999999998764 678999999999999999 9999999999 89999999999999999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhcc----CCCceeHHHHHHHHHhcCCh
Q 008097 88 MKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDME----EPNDVTFSILICAYCKEENL 163 (577)
Q Consensus 88 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~ 163 (577)
+.+|++.|+++.|.++|++|.+ ||..+||+++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 9999999999999999999964 799999999999999999999999999996 38899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh------------hhcCChhHHHHHHHHHHHcC
Q 008097 164 VNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ------------GRLGKVKGGCRFLKEMERKG 231 (577)
Q Consensus 164 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------------~~~g~~~~a~~~~~~~~~~~ 231 (577)
+.+.+++..+.+.|+.||..+|++++.+|++.|++++|.++|+.|... .+.|+.++|.++|++|.+.|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999887554 77888888888888888888
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccH
Q 008097 232 CLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPY 311 (577)
Q Consensus 232 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 311 (577)
+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..++++|+++|+++|++++|.++|+.|.+ ||..+|
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~------~d~~t~ 394 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR------KNLISW 394 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC------CCeeeH
Confidence 88888888888888888888888888888888888888888888888888888888888888888764 378888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh--cCCCceehHHHHHHhhhcCCHHHHHHHHHHHHH-cCCCCCHhhHHHHHHHHHh
Q 008097 312 NSVLYGLYRENQQDEALEYLKQMEK--LFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIE-EGGVPNVVIYDCLIHAYCQ 388 (577)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~li~~~~~ 388 (577)
|+||.+|++.|+.++|+++|++|.+ ..||..+|+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++|+++|++
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 8888888888888888888888876 578888888888888888888888888888876 4888888888888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhH
Q 008097 389 EERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQS 467 (577)
Q Consensus 389 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 467 (577)
.|++++|.+++++| ++.||..+|++++.+|...|+++.|..+++ .+. ++.| +..+|..|+++|++.|++++
T Consensus 475 ~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~-~l~----~~~p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 475 EGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAE-KLY----GMGPEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred cCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHH-HHh----CCCCCCCcchHHHHHHHHhCCCHHH
Confidence 88888888888776 467888888888888888888888888888 443 2556 56788888888888888888
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHH-------HHHHHhc-----chHHHHHHHHHHHH--H----HHHHhhhhhhhhHHHH
Q 008097 468 ASMLLVQMVGKGILPD-YLTWNSL-------LICLSQQ-----TTWLLLLLLNEMVS--F----VMVVHELSAKEKRCKL 528 (577)
Q Consensus 468 A~~~~~~m~~~~~~p~-~~~~~~l-------l~~~~~~-----~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~ 528 (577)
|.+++++|.++|+++. ..+|..+ +.+-..+ ....+.++..+|.. | ..+.+.....++...+
T Consensus 547 A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~ 626 (697)
T PLN03081 547 AAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSG 626 (697)
T ss_pred HHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHH
Confidence 8888888888887633 3445332 1111111 11122333333332 1 1222344444454444
Q ss_pred Hhh-H------hhhc-CCC---CccccccCCCeeeEE
Q 008097 529 RSL-N------HLAH-GAG---SVWLGLRIHDTTHTF 554 (577)
Q Consensus 529 ~~~-~------~~~~-~~g---~~~~~~~~~~~~~~~ 554 (577)
..| + ||-. .|| ...+|+|||++||++
T Consensus 627 ~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~ 663 (697)
T PLN03081 627 RYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKV 663 (697)
T ss_pred HhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhh
Confidence 444 2 4433 334 466899999999987
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.6e-28 Score=272.16 Aligned_cols=542 Identities=12% Similarity=0.071 Sum_probs=381.4
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHH
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAI 86 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ 86 (577)
|.++..+..+...+.+.|++++|...++.+.+..+ .+...++.+...+.+. ++++|.++|+ .+.... +.+...+..
T Consensus 326 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~-~~~~~~~~~ 402 (899)
T TIGR02917 326 PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLA-KATELD-PENAAARTQ 402 (899)
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH-HHHhcC-CCCHHHHHH
Confidence 34455666667777777777777777777765432 3556666666667666 7777777777 444332 224455666
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCCh
Q 008097 87 LMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEENL 163 (577)
Q Consensus 87 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 163 (577)
+...+...|++++|.+.+..+.+.... .......++..|.+.|++++|..+++++.. .+..+|+.+...|...|++
T Consensus 403 l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 481 (899)
T TIGR02917 403 LGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDL 481 (899)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCH
Confidence 666677777777777777777765422 334555667777778888888888777763 3556777888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh---------------hhcCChhHHHHHHHHHH
Q 008097 164 VNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ---------------GRLGKVKGGCRFLKEME 228 (577)
Q Consensus 164 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------~~~g~~~~a~~~~~~~~ 228 (577)
++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+... ...|+.++|..++.++.
T Consensus 482 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 560 (899)
T TIGR02917 482 AKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAA 560 (899)
T ss_pred HHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888877653 334556677777888888888888888877654 46778888888888887
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCc
Q 008097 229 RKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRI 308 (577)
Q Consensus 229 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 308 (577)
..+. .+...+..++..|...|++++|..+++.+.+.. +.+..+|..+...|...|++++|...|+.+.... +.+.
T Consensus 561 ~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~ 635 (899)
T TIGR02917 561 ELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ---PDSA 635 (899)
T ss_pred HhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCh
Confidence 6543 356677778888888888888888888887653 5567788888888888888888888888887652 2255
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 008097 309 SPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYC 387 (577)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 387 (577)
..+..+...+.+.|++++|...++++.+..|+ ...+..+...+...|++++|.++++.+.+.. +++...+..+...+.
T Consensus 636 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 714 (899)
T TIGR02917 636 LALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYL 714 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHH
Confidence 67788888888888888888888888877665 4567777888888889999999988888763 456777888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhH
Q 008097 388 QEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQS 467 (577)
Q Consensus 388 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 467 (577)
..|++++|++.|+++... .|+..++..+..++.+.|+.++|.+.+++.+. . .+.+...+..+...|...|++++
T Consensus 715 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~--~~~~~~~~~~la~~~~~~g~~~~ 788 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--T--HPNDAVLRTALAELYLAQKDYDK 788 (899)
T ss_pred HCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHCcCHHH
Confidence 899999999999988874 36667777888888899999999988884444 1 23367788888899999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchHHHHHHHHH--------HHHHHHHHhhhhhhhhHHHHHhh--HhhhcC
Q 008097 468 ASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWLLLLLLNE--------MVSFVMVVHELSAKEKRCKLRSL--NHLAHG 537 (577)
Q Consensus 468 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 537 (577)
|.+.++++.+.. +++..+++.+...+...|+.+....... ...+..+...+...|+.++..+. ..+...
T Consensus 789 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 789 AIKHYRTVVKKA-PDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999988652 4466788888888888877432222222 12223344445555655544443 244555
Q ss_pred CCCccccccCCCeeeEEEecchhccCcccccccccccC
Q 008097 538 AGSVWLGLRIHDTTHTFIIDRRVEIGHVFCSSSSLKDV 575 (577)
Q Consensus 538 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (577)
|+...+ ....+.-....|...++..++.+|
T Consensus 868 ~~~~~~--------~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 868 PEAAAI--------RYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred CCChHH--------HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 553332 112233345556665555554443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.6e-28 Score=268.44 Aligned_cols=504 Identities=13% Similarity=0.056 Sum_probs=395.5
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHH
Q 008097 7 SPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYA 85 (577)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~ 85 (577)
.|.++..+..+...+.+.|++++|.+.|+.+.+..+ .+...|..+...+... ++++|.+.|. ........ +.....
T Consensus 359 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~-~a~~~~~~-~~~~~~ 435 (899)
T TIGR02917 359 DPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLE-TAAQLDPE-LGRADL 435 (899)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHH-HHHhhCCc-chhhHH
Confidence 356788899999999999999999999999987543 3566777777777777 9999999998 55544322 334556
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCC
Q 008097 86 ILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEEN 162 (577)
Q Consensus 86 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 162 (577)
.++..+.+.|++++|.+++..+.+. .+++..++..+...|...|++++|...|+++.+ .+...+..+...+...|+
T Consensus 436 ~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 514 (899)
T TIGR02917 436 LLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN 514 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCC
Confidence 6778888999999999999999875 345778899999999999999999999998764 345567778888999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh---------------hhcCChhHHHHHHHHH
Q 008097 163 LVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ---------------GRLGKVKGGCRFLKEM 227 (577)
Q Consensus 163 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------~~~g~~~~a~~~~~~~ 227 (577)
+++|.+.|+++.... +.+..++..+...+.+.|+.++|...++.+... ...|++++|..+++.+
T Consensus 515 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 515 PDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999998765 346778888889999999999999998887554 5688999999999998
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCC
Q 008097 228 ERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGR 307 (577)
Q Consensus 228 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 307 (577)
.... +.+...|..+...|...|++++|...|+++.+.. +.+...+..+...|.+.|++++|..+++.+.... +.+
T Consensus 594 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~ 668 (899)
T TIGR02917 594 ADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK---PDN 668 (899)
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC
Confidence 7753 3467889999999999999999999999988753 4466778888889999999999999999888753 335
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 008097 308 ISPYNSVLYGLYRENQQDEALEYLKQMEKLFP-RAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAY 386 (577)
Q Consensus 308 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 386 (577)
..++..+...+...|++++|..+++.+.+..| +...+..+...|.+.|++++|...|+++... .|+..++..++.++
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 746 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHH
Confidence 67888888899999999999999999887655 4455667778888999999999999998875 35557777888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChh
Q 008097 387 CQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQ 466 (577)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~ 466 (577)
.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|..+|++.+. . -++++..+..+...+...|+ +
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~-~p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK---K-APDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH---h-CCCCHHHHHHHHHHHHhcCc-H
Confidence 99999999999999888753 44677788888888889999999999984443 1 13367788888888999888 7
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcchHHHHH-HHH--------HHHHHHHHHhhhhhhhhHHHHHh
Q 008097 467 SASMLLVQMVGKGILPD-YLTWNSLLICLSQQTTWLLLL-LLN--------EMVSFVMVVHELSAKEKRCKLRS 530 (577)
Q Consensus 467 ~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 530 (577)
+|.+.++++.+. .|+ ..+|..+...+...|+.+.+. ... +...+..++..+...|+.++.+.
T Consensus 821 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 821 RALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred HHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 899999888753 343 466777777788888776432 112 23344555666666666655544
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=5.7e-20 Score=204.63 Aligned_cols=474 Identities=13% Similarity=0.040 Sum_probs=331.0
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHH----------------HHHHHHHHhc-CHHHHHHHHHH
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIF----------------NSILDVLVKE-DIDLARAFYRK 70 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----------------~~li~~~~~~-~~~~a~~~~~~ 70 (577)
|.++.++..++..+.+.|+.++|.+.+++..+..|. +...+ ..+...+... ++++|+..|+
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~- 136 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYD- 136 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHH-
Confidence 557888999999999999999999999999886542 22221 2222345666 9999999998
Q ss_pred HHhhcCCCCCHh-hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCc--
Q 008097 71 KMMASGVQGDDY-TYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPND-- 147 (577)
Q Consensus 71 ~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-- 147 (577)
.+.... +|+.. ............|+.++|.+.++++.+.. +.+...+..+...+...|+.++|+..|+++.+...
T Consensus 137 ~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~ 214 (1157)
T PRK11447 137 KLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGR 214 (1157)
T ss_pred HHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCch
Confidence 554432 23322 11111222234689999999999998874 33667788888999999999999999887642100
Q ss_pred ----ee-----------------HH----------------------------------HHHHHHHhcCChHHHHHHHHH
Q 008097 148 ----VT-----------------FS----------------------------------ILICAYCKEENLVNALVLLEK 172 (577)
Q Consensus 148 ----~~-----------------~~----------------------------------~li~~~~~~~~~~~A~~~~~~ 172 (577)
.. +. .....+...|++++|+..|++
T Consensus 215 ~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~ 294 (1157)
T PRK11447 215 DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQ 294 (1157)
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 00 00 112345677999999999999
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh-----------------------------hhcCChhHHHHH
Q 008097 173 SFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ-----------------------------GRLGKVKGGCRF 223 (577)
Q Consensus 173 m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----------------------------~~~g~~~~a~~~ 223 (577)
..+.. +.+...+..+..++.+.|++++|...|+.+++. .+.|++++|...
T Consensus 295 aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 295 AVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88754 236778888889999999999999999888763 256788889999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHH--------------------------
Q 008097 224 LKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTL-------------------------- 277 (577)
Q Consensus 224 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-------------------------- 277 (577)
|++...... .+...+..+...+...|++++|++.|++..+.. +.+...+..+
T Consensus 374 ~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 374 YQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence 999888643 256677788889999999999999999988652 2223333222
Q ss_pred ----------------HHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 008097 278 ----------------IRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA 341 (577)
Q Consensus 278 ----------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 341 (577)
...+...|++++|.+.|++..+..+. +...+..+...|.+.|++++|...++++.+..|+.
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~---~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~ 528 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG---SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND 528 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 23345678888888888888876333 55567778888888999999999998887766643
Q ss_pred ee-hHHHHH--------------------------------------------HhhhcCCHHHHHHHHHHHHHcCCCCCH
Q 008097 342 VD-RSLKIL--------------------------------------------GFCVDGNVEDAKRCFDQMIEEGGVPNV 376 (577)
Q Consensus 342 ~~-~~~l~~--------------------------------------------~~~~~g~~~~A~~~~~~~~~~~~~p~~ 376 (577)
.. +..+.. .+...|+.++|..+++. .+++.
T Consensus 529 ~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~ 603 (1157)
T PRK11447 529 PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPST 603 (1157)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCc
Confidence 22 222222 23344444445444441 23455
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHH
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSP 454 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~ 454 (577)
..+..+...|.+.|++++|++.|++..+. .| +...+..+...+...|+.++|...+++.+. ..| +...+..
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~-----~~p~~~~~~~~ 676 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA-----TANDSLNTQRR 676 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-----cCCCChHHHHH
Confidence 56777888888999999999999998874 35 566788888899999999999999984333 345 4556777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCC-C----CHHHHHHHHHHHHhcchHHHH
Q 008097 455 LIKALCEKGGFQSASMLLVQMVGKGIL-P----DYLTWNSLLICLSQQTTWLLL 503 (577)
Q Consensus 455 li~~~~~~g~~~~A~~~~~~m~~~~~~-p----~~~~~~~ll~~~~~~~~~~~~ 503 (577)
+..++...|++++|.++++++....-. | +..++..+...+...|+.+.+
T Consensus 677 la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 677 VALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 888888999999999999998754221 1 123455555666777776543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=2.7e-19 Score=199.19 Aligned_cols=380 Identities=13% Similarity=0.061 Sum_probs=226.9
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC--CCc---eeHHHH-----------
Q 008097 90 GLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--PND---VTFSIL----------- 153 (577)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~l----------- 153 (577)
.+...|++++|+..|++.++.. +.+...+..+...|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 3445666666766666666643 22455666666666666777777666666553 221 112111
Q ss_pred -HHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh--------------hhcCChh
Q 008097 154 -ICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ--------------GRLGKVK 218 (577)
Q Consensus 154 -i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------------~~~g~~~ 218 (577)
...+.+.|++++|+..|+++.... +.+...+..+...+...|++++|.+.|+.+++. ...++.+
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence 223456666666666666666543 223445555666666666666666666666544 1122333
Q ss_pred HHHHHHHHHHHcCCC--------CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHH
Q 008097 219 GGCRFLKEMERKGCL--------PNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDG 290 (577)
Q Consensus 219 ~a~~~~~~~~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 290 (577)
+|..+++.+...... .....+..+...+...|++++|+..|++..+.. +-+...+..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 343333322211000 001122333344444555555555555554432 11333444444555555555555
Q ss_pred HHHHHHHHhccCCCCCCcccH--------------------------------------------HHHHHHHHhcCCHHH
Q 008097 291 LKILQLMEDSKEGSKGRISPY--------------------------------------------NSVLYGLYRENQQDE 326 (577)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~li~~~~~~g~~~~ 326 (577)
...++.+....+. +...+ ..+...+...|+.++
T Consensus 515 ~~~l~~al~~~P~---~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 515 DALMRRLAQQKPN---DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHcCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 5555554443211 11111 123445566666677
Q ss_pred HHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008097 327 ALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHG 406 (577)
Q Consensus 327 A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 406 (577)
|..+++ ...++...+..+...|.+.|++++|+..|+++.+.. +.+...+..++..|...|++++|++.++...+.
T Consensus 592 A~~~l~---~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~- 666 (1157)
T PRK11447 592 AEALLR---QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT- 666 (1157)
T ss_pred HHHHHH---hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 766665 222344456677888999999999999999999863 346889999999999999999999999988764
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC---CcccHHHHHHHHHHcCChhHHHHHHHHHHH-CCCC
Q 008097 407 YLPI-ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP---GSGHYSPLIKALCEKGGFQSASMLLVQMVG-KGIL 481 (577)
Q Consensus 407 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~ 481 (577)
.|+ ..+...+..++...|++++|.+++++.+. ......| +...+..+...+...|++++|.+.+++... .|+.
T Consensus 667 -~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 667 -ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP-QAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred -CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh-hCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 454 45567788888999999999999995444 1111122 234666778899999999999999999863 3344
Q ss_pred C
Q 008097 482 P 482 (577)
Q Consensus 482 p 482 (577)
|
T Consensus 745 ~ 745 (1157)
T PRK11447 745 P 745 (1157)
T ss_pred C
Confidence 3
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.2e-20 Score=187.55 Aligned_cols=309 Identities=15% Similarity=0.105 Sum_probs=223.2
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCC-C------ceeHHHHHHHHHhcCC
Q 008097 90 GLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEP-N------DVTFSILICAYCKEEN 162 (577)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~~~ 162 (577)
.+...|++++|...|.++.+.+. .+..++..+...|.+.|++++|..+++.+... + ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 44567788888888888887642 34557777778888888888888888776642 1 1346677778888888
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCC----hhh
Q 008097 163 LVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPN----VDT 238 (577)
Q Consensus 163 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~ 238 (577)
+++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+ ...+..+. ...
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-------------------~~~~~~~~~~~~~~~ 182 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERL-------------------EKLGGDSLRVEIAHF 182 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHH-------------------HHhcCCcchHHHHHH
Confidence 888888888887642 345667777788887777777777765443 22221111 123
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL 318 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 318 (577)
+..+...+.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|.+.++++....+ .....+++.++.+|
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~~l~~~~ 259 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP--EYLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh--hhHHHHHHHHHHHH
Confidence 4566777788889999999998887653 33456777788888888999999998888876521 11234567788888
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh---cCCHHHH
Q 008097 319 YRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ---EERVREA 395 (577)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A 395 (577)
.+.|++++|...++++.+..|+...+..+...+.+.|++++|..+|+++.+. .|+..+++.++..+.. .|+.+++
T Consensus 260 ~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a 337 (389)
T PRK11788 260 QALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKES 337 (389)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhH
Confidence 8888888888888888887777766677788888888888888888888774 5788888877777664 5578888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008097 396 SELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTA 430 (577)
Q Consensus 396 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 430 (577)
+.++++|.+.++.|++. ..|.++|...+-
T Consensus 338 ~~~~~~~~~~~~~~~p~------~~c~~cg~~~~~ 366 (389)
T PRK11788 338 LLLLRDLVGEQLKRKPR------YRCRNCGFTART 366 (389)
T ss_pred HHHHHHHHHHHHhCCCC------EECCCCCCCCcc
Confidence 88888888777777665 357777766543
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=2.5e-20 Score=185.16 Aligned_cols=301 Identities=17% Similarity=0.138 Sum_probs=212.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCC--
Q 008097 157 YCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLP-- 234 (577)
Q Consensus 157 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p-- 234 (577)
+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+. ..+..+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-------------------~~~~~~~~ 104 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLL-------------------SRPDLTRE 104 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHh-------------------cCCCCCHH
Confidence 344455555555555555432 1233455555555555555555555543321 111000
Q ss_pred -ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC--CcccH
Q 008097 235 -NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG--RISPY 311 (577)
Q Consensus 235 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~ 311 (577)
....+..+...|.+.|++++|..+|+++.+.. +++..++..++..|.+.|++++|.+.++.+.+..+.... ....+
T Consensus 105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 183 (389)
T PRK11788 105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFY 183 (389)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 12356677778888888888888888887652 446677888888888888888888888888765221100 01134
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008097 312 NSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE 390 (577)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (577)
..+...+.+.|++++|...|+++.+..|+. ..+..+...|.+.|++++|.++|+++...+......+++.++.+|...|
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 263 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALG 263 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcC
Confidence 556667788888888888888888766653 3556677788889999999999999887532222467888999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHH---cCChhH
Q 008097 391 RVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCE---KGGFQS 467 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~---~g~~~~ 467 (577)
++++|.+.++++.+. .|+...+..+...+.+.|++++|..++++.+. ..|+...+..++..+.. .|+.++
T Consensus 264 ~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~-----~~P~~~~~~~l~~~~~~~~~~g~~~~ 336 (389)
T PRK11788 264 DEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLR-----RHPSLRGFHRLLDYHLAEAEEGRAKE 336 (389)
T ss_pred CHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCcCHHHHHHHHHHhhhccCCccchh
Confidence 999999999999874 57777778888999999999999999985555 46888888888888775 568999
Q ss_pred HHHHHHHHHHCCCCCCHH
Q 008097 468 ASMLLVQMVGKGILPDYL 485 (577)
Q Consensus 468 A~~~~~~m~~~~~~p~~~ 485 (577)
|..++++|.+++++|++.
T Consensus 337 a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 337 SLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999888888775
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=3e-17 Score=174.93 Aligned_cols=277 Identities=14% Similarity=0.038 Sum_probs=191.1
Q ss_pred hhcCChhHHHHHHHHHHHc-C-CCCChhhHHHHHHHHHhcCC---hhHHHHH------------HH----------HHHH
Q 008097 212 GRLGKVKGGCRFLKEMERK-G-CLPNVDTYNILISSYCETGV---LDSALDV------------FN----------DMKI 264 (577)
Q Consensus 212 ~~~g~~~~a~~~~~~~~~~-~-~~p~~~~~~~li~~~~~~g~---~~~A~~~------------~~----------~m~~ 264 (577)
...|+.++|.++|...... + -.++.....-++..|.+.+. ..++..+ .. ....
T Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (987)
T PRK09782 387 MQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVR 466 (987)
T ss_pred HHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHH
Confidence 4667777787777776652 1 11233344466777776655 3333222 11 1111
Q ss_pred C-CC-Cc--CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 008097 265 D-GI-SW--NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 265 ~-g~-~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
. +. ++ +...|..+..++.. ++.++|...+....... |+......+...+.+.|++++|...|+++....|.
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~----Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~ 541 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ----PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMS 541 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC----CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 0 11 33 55666667766665 78888888887777652 23222333344456889999999999988777666
Q ss_pred ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008097 341 AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSG 420 (577)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 420 (577)
...+..+...+.+.|+.++|...|++..+.. +++...+..+.....+.|++++|+..+++..+ +.|+...+..+..+
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~ 618 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATI 618 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHH
Confidence 6666677778888999999999999988753 22333333333444456999999999999987 45787788888889
Q ss_pred HHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcc
Q 008097 421 LCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPD-YLTWNSLLICLSQQT 498 (577)
Q Consensus 421 ~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~ 498 (577)
+.+.|+.++|...+++.+. ..| +...+..+..++...|++++|.+.+++..+ ..|+ ...|..+-.++...|
T Consensus 619 l~~lG~~deA~~~l~~AL~-----l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 619 YRQRHNVPAAVSDLRAALE-----LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCC
Confidence 9999999999999996555 567 677788888899999999999999999885 4554 577888888888888
Q ss_pred hHHHH
Q 008097 499 TWLLL 503 (577)
Q Consensus 499 ~~~~~ 503 (577)
+.+.+
T Consensus 692 d~~eA 696 (987)
T PRK09782 692 DMAAT 696 (987)
T ss_pred CHHHH
Confidence 87643
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=5e-19 Score=167.75 Aligned_cols=360 Identities=19% Similarity=0.201 Sum_probs=266.4
Q ss_pred chHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH-HHHHH
Q 008097 117 VIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITK-VLELL 192 (577)
Q Consensus 117 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~-ll~~~ 192 (577)
.+|+.+.+.+-..|++.+|+.+++.+.+ ..+..|.-+..++...|+.+.|.+.|.+.++. .|+.....+ +...+
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHH
Confidence 3445555555555555555555555443 12344555555555555555555555544432 233222211 22223
Q ss_pred HhcCCHhHHHHHHHHHHHh---------------hhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHH
Q 008097 193 CSVGRVMDAVEILEESGEQ---------------GRLGKVKGGCRFLKEMERKGCLPN-VDTYNILISSYCETGVLDSAL 256 (577)
Q Consensus 193 ~~~g~~~~a~~~~~~~~~~---------------~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 256 (577)
-..|++++|...+-++++. -..|++..|+..|++.... .|+ ...|-.|-..|...+.++.|.
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHH
Confidence 3345555555555444443 3345555555556666554 444 467888999999999999999
Q ss_pred HHHHHHHHCCCCcC-HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008097 257 DVFNDMKIDGISWN-FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQME 335 (577)
Q Consensus 257 ~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 335 (577)
..|.+.... .|+ ...+..+...|...|.+|.|+..+++..+..+. =...|+.|..++-..|+..+|...+.+..
T Consensus 273 s~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~---F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 273 SCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN---FPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC---chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 999988765 454 567778888899999999999999999987544 34679999999999999999999999999
Q ss_pred hcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-
Q 008097 336 KLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAS- 412 (577)
Q Consensus 336 ~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~- 412 (577)
...|+. ...+.+...|...|.+++|.++|....+ +.|. ....|.|...|-++|++++|+..+++.++ +.|+..
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAd 423 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFAD 423 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHH
Confidence 987764 5678899999999999999999999988 4555 56789999999999999999999999997 789754
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHH
Q 008097 413 TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDY-LTWNSL 490 (577)
Q Consensus 413 ~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l 490 (577)
.++.+...|...|+++.|.+.+.+.+. +.| -.+..+.|..+|-.+|+..+|++-+++.. .++||. ..+-.|
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~-----~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL--klkPDfpdA~cNl 496 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQ-----INPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL--KLKPDFPDAYCNL 496 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHh-----cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH--ccCCCCchhhhHH
Confidence 689999999999999999999997766 788 46788999999999999999999999998 578885 667778
Q ss_pred HHHHHh
Q 008097 491 LICLSQ 496 (577)
Q Consensus 491 l~~~~~ 496 (577)
+++...
T Consensus 497 lh~lq~ 502 (966)
T KOG4626|consen 497 LHCLQI 502 (966)
T ss_pred HHHHHH
Confidence 777543
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=5.2e-19 Score=167.63 Aligned_cols=430 Identities=15% Similarity=0.124 Sum_probs=272.6
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHH
Q 008097 14 FITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLC 92 (577)
Q Consensus 14 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~ 92 (577)
...|..-..+.|++.+|++.-...-+.++... ...-.+-..+.+. +++.....-. ...+. .+.-..+|..+.+.+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~-~~llll~ai~~q~~r~d~s~a~~~-~a~r~-~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNT-ERLLLLSAIFFQGSRLDKSSAGSL-LAIRK-NPQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcc-cceeeehhhhhcccchhhhhhhhh-hhhhc-cchHHHHHHHHHHHHH
Confidence 45566666788888888876665544332111 1111111222222 2222221111 00110 1112344555555555
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC--CCceeHHH-HHHHHHhcCChHHHHHH
Q 008097 93 LTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--PNDVTFSI-LICAYCKEENLVNALVL 169 (577)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~~~~~~A~~~ 169 (577)
..|+++.|+.+++.+++... .....|..+..++...|+.+.|...|....+ |+.....+ +-...-..|+.++|...
T Consensus 128 erg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred HhchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHH
Confidence 55555555555555554321 1334445555555555555555555544443 22121111 11112223444444444
Q ss_pred HHHHHhCCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHHHHh---------------hhcCChhHHHHHHHHHHHcCCC
Q 008097 170 LEKSFSFGFVPD-VVTITKVLELLCSVGRVMDAVEILEESGEQ---------------GRLGKVKGGCRFLKEMERKGCL 233 (577)
Q Consensus 170 ~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------~~~g~~~~a~~~~~~~~~~~~~ 233 (577)
|.+.... .|. .+.|+.|...+-..|+...|.+.|+++.+. ...+.++.|...+...... .
T Consensus 207 YlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--r 282 (966)
T KOG4626|consen 207 YLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--R 282 (966)
T ss_pred HHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--C
Confidence 4443332 111 233444444444444444444444444433 2233334444444444433 2
Q ss_pred C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccH
Q 008097 234 P-NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWN-FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPY 311 (577)
Q Consensus 234 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 311 (577)
| ..+.+..|...|...|..|.|+..|++.++. .|+ ...|+.|..++-..|++.+|.+.+.......+. ...+.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~---hadam 357 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN---HADAM 357 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc---cHHHH
Confidence 3 4567888888899999999999999999876 454 578999999999999999999999999876322 55678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhc
Q 008097 312 NSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQE 389 (577)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 389 (577)
+.|...|...|.+++|..+|....+..|.. ...+.+...|-+.|++++|+..+++.++ ++|+ ..+|+.|...|-..
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHh
Confidence 899999999999999999999999988875 5678899999999999999999999998 6777 56899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC-cccHHHHHHHHHHcCCh
Q 008097 390 ERVREASELMKEMTGHGYLPIA-STFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG-SGHYSPLIKALCEKGGF 465 (577)
Q Consensus 390 g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~-~~~~~~li~~~~~~g~~ 465 (577)
|+.+.|++.+.+.+. +.|.. ..++.|.+.|..+|++.+|+.-+++.++ ++|| +..|..++.++.--.+|
T Consensus 436 g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk-----lkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK-----LKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred hhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc-----cCCCCchhhhHHHHHHHHHhcc
Confidence 999999999999997 56764 4689999999999999999999997777 7885 55666666665444443
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=5.1e-17 Score=170.01 Aligned_cols=428 Identities=11% Similarity=-0.022 Sum_probs=278.3
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHH
Q 008097 14 FITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLC 92 (577)
Q Consensus 14 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~ 92 (577)
+......|.+.|++++|+..|+..++. .|+...|..+..+|.+. ++++|++.+. ...+.. +.+...|..+..++.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~-~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTT-AALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHH-HHHHcC-CCCHHHHHHHHHHHH
Confidence 445666777778888888888877763 45556666666677776 7778877777 443322 123556666777777
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHH
Q 008097 93 LTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEK 172 (577)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 172 (577)
..|++++|..-|..+...+...+.. ...++.-+........+...++.- .++..++..+.. |...........-+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 7788877777776655442111111 111111111111122233333221 123333333322 2221111111111111
Q ss_pred HHhCCCCCCH-hhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcC-CCC-ChhhHHHHHHHHHhc
Q 008097 173 SFSFGFVPDV-VTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKG-CLP-NVDTYNILISSYCET 249 (577)
Q Consensus 173 m~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~-~~p-~~~~~~~li~~~~~~ 249 (577)
... ..++. ..+..+.. . .......+.+++|...|+.....+ ..| +...|+.+...+...
T Consensus 283 ~~~--~~~~~~~~~~~l~~------------~----~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~ 344 (615)
T TIGR00990 283 SNE--LDEETGNGQLQLGL------------K----SPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK 344 (615)
T ss_pred ccc--cccccccchHHHHH------------H----HHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Confidence 100 01110 00000000 0 000012345566666677776653 223 456788888889999
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 008097 250 GVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALE 329 (577)
Q Consensus 250 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 329 (577)
|++++|+..|++..... +-+..+|..+...+...|++++|...|+.+.+.++. +...|..+...+...|++++|..
T Consensus 345 g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~ 420 (615)
T TIGR00990 345 GKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE---DPDIYYHRAQLHFIKGEFAQAGK 420 (615)
T ss_pred CCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998762 234668888889999999999999999999876332 56788999999999999999999
Q ss_pred HHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008097 330 YLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYL 408 (577)
Q Consensus 330 ~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 408 (577)
.|++..+..|+. ..+..+...+.+.|++++|...|++.... .+.+...|+.+...+...|++++|++.|++..+. .
T Consensus 421 ~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~ 497 (615)
T TIGR00990 421 DYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--E 497 (615)
T ss_pred HHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--C
Confidence 999999988864 45666778889999999999999999875 3345788999999999999999999999998864 2
Q ss_pred CCH-------H-HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 008097 409 PIA-------S-TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGK 478 (577)
Q Consensus 409 p~~-------~-~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 478 (577)
|+. . .++..+..+...|++++|..++++.+. +.| +...+..+..++.+.|++++|.+.+++..+.
T Consensus 498 p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~-----l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 498 KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI-----IDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 321 1 112222233447999999999996565 456 4457889999999999999999999998753
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=1.1e-15 Score=162.95 Aligned_cols=245 Identities=11% Similarity=-0.029 Sum_probs=174.0
Q ss_pred HHhcCChhHHHHHHHHHHHC-C-CCcCHHHHHHHHHHHHcCCChH---HH----------------------HHHHHHHH
Q 008097 246 YCETGVLDSALDVFNDMKID-G-ISWNFVTYDTLIRGLCSGGRID---DG----------------------LKILQLME 298 (577)
Q Consensus 246 ~~~~g~~~~A~~~~~~m~~~-g-~~~~~~~~~~ll~~~~~~g~~~---~a----------------------~~~~~~~~ 298 (577)
..+.|+.++|.++|+..... + ..++.....-++..|.+.+.+. ++ ........
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 34567777788877777652 1 2233333446666666665522 22 22222222
Q ss_pred hccCCCCC--CcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCH
Q 008097 299 DSKEGSKG--RISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNV 376 (577)
Q Consensus 299 ~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 376 (577)
..-+..++ +...|..+..++.. +++++|...+.+.....|+......+...+...|++++|...|+++... +|+.
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~ 542 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSN 542 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCc
Confidence 22112233 45567777777776 8999999999998888887544333444556899999999999998763 4555
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHH
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGHGYLPIA-STFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPL 455 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~l 455 (577)
..+..+...+.+.|+.++|...+++..+.. |+. ..+..+...+.+.|++++|...+++.+. +.|+...|..+
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~-----l~P~~~a~~~L 615 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN-----IAPSANAYVAR 615 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----hCCCHHHHHHH
Confidence 667778888999999999999999999754 543 3344444555677999999999997666 67888899999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcchHHH
Q 008097 456 IKALCEKGGFQSASMLLVQMVGKGILPDY-LTWNSLLICLSQQTTWLL 502 (577)
Q Consensus 456 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~ 502 (577)
..++.+.|++++|...+++..+ ..|+. ..+..+-.++...|+.+.
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999985 56664 566777778888887654
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1e-16 Score=167.21 Aligned_cols=325 Identities=11% Similarity=0.050 Sum_probs=181.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC--C-CceeHHHHHHHHHhcCC
Q 008097 86 ILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--P-NDVTFSILICAYCKEEN 162 (577)
Q Consensus 86 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~ 162 (577)
.++..+.+.|++++|..+++........ +...+..++......|++++|...|+++.+ | +...|..+...+...|+
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 3455555666666666666666655332 233334444455556666666666666653 2 33445555566666666
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 008097 163 LVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNIL 242 (577)
Q Consensus 163 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 242 (577)
+++|+..|+++.... +.+...+..+...+...|++++|...++. +...... +...+..+
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~-------------------~~~~~P~-~~~a~~~~ 184 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLART-------------------QAQEVPP-RGDMIATC 184 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHH-------------------HHHhCCC-CHHHHHHH
Confidence 666666666665532 22344555556666666666666555332 2221111 12222222
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcC
Q 008097 243 ISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYREN 322 (577)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 322 (577)
..+...|++++|...++.+.+....++...+..+...+.+.|++++|...++......+ .+...+..+...+.+.|
T Consensus 185 -~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p---~~~~~~~~Lg~~l~~~G 260 (656)
T PRK15174 185 -LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL---DGAALRRSLGLAYYQSG 260 (656)
T ss_pred -HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcC
Confidence 23556666666666666665543223333344445556666666666666666665422 24455566666666666
Q ss_pred CHHH----HHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008097 323 QQDE----ALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASE 397 (577)
Q Consensus 323 ~~~~----A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 397 (577)
++++ |...|+++.+..|+. ..+..+...+.+.|++++|...+++..... +.+...+..+..+|.+.|++++|++
T Consensus 261 ~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~ 339 (656)
T PRK15174 261 RSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASD 339 (656)
T ss_pred CchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 6664 566666666655543 345555666666677777777777666642 2234455666666777777777777
Q ss_pred HHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 398 LMKEMTGHGYLPIAST-FNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 398 ~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
.|+++... .|+... +..+..++...|+.++|...|++.+.
T Consensus 340 ~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 340 EFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77766653 344332 33334556667777777777764444
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=1.8e-16 Score=165.26 Aligned_cols=325 Identities=14% Similarity=0.068 Sum_probs=132.8
Q ss_pred HHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCC
Q 008097 17 VIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNR 96 (577)
Q Consensus 17 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 96 (577)
++..+.+.|++++|..+++......+.+....++..+..+...++++|+..|+ .+.... +.+...+..+...+.+.|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~-~~l~~~-P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVN-KLLAVN-VCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHH-HHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 34444444555555555555544433333333333322222125555555554 332221 1123334444444445555
Q ss_pred HhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC--CCce-eHHHHHHHHHhcCChHHHHHHHHHH
Q 008097 97 VGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--PNDV-TFSILICAYCKEENLVNALVLLEKS 173 (577)
Q Consensus 97 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~A~~~~~~m 173 (577)
+++|...++++.+.. +.+...+..+...+...|++++|...++.+.. |+.. .+.. +..+...|++++|...++.+
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~-~~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT-CLSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHcCCHHHHHHHHHHH
Confidence 555555555554431 12333444444455555555555554444321 2111 1111 12244445555555555544
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChh
Q 008097 174 FSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLD 253 (577)
Q Consensus 174 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 253 (577)
......++...+..+..++.+.|++++|...++. ..... +.+...+..+...|...|+++
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~-------------------al~~~-p~~~~~~~~Lg~~l~~~G~~~ 263 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGES-------------------ALARG-LDGAALRRSLGLAYYQSGRSR 263 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHH-------------------HHhcC-CCCHHHHHHHHHHHHHcCCch
Confidence 4332222222222233334444444444433222 22111 112334444444444445444
Q ss_pred H----HHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 008097 254 S----ALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALE 329 (577)
Q Consensus 254 ~----A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 329 (577)
+ |...|++..+.. +.+...+..+...+.+.|++++|...++......+. +...+..+...+.+.|++++|..
T Consensus 264 eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~---~~~a~~~La~~l~~~G~~~eA~~ 339 (656)
T PRK15174 264 EAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD---LPYVRAMYARALRQVGQYTAASD 339 (656)
T ss_pred hhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHH
Confidence 3 444444444331 223334444444444455555555555444443111 22334444444444455555555
Q ss_pred HHHHHhhcCCCceehH-HHHHHhhhcCCHHHHHHHHHHHHH
Q 008097 330 YLKQMEKLFPRAVDRS-LKILGFCVDGNVEDAKRCFDQMIE 369 (577)
Q Consensus 330 ~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~ 369 (577)
.++++....|+...+. .+..++...|+.++|...|++..+
T Consensus 340 ~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 340 EFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5444444444332221 123334444444555444444444
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=3.4e-15 Score=156.12 Aligned_cols=435 Identities=11% Similarity=0.057 Sum_probs=253.5
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCC---Hhh
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGD---DYT 83 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~---~~~ 83 (577)
|..+.+...-+-...+.|+++.|+..|++..+..+.-....+ .++..+... +.++|+..++ ... .|+ ...
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~e-ka~----~p~n~~~~~ 104 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYE-RYQ----SSMNISSRG 104 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHH-Hhc----cCCCCCHHH
Confidence 334445455555667999999999999999885443222334 777777777 9999999999 443 333 223
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHh--cC
Q 008097 84 YAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCK--EE 161 (577)
Q Consensus 84 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~~ 161 (577)
...+...+...|++++|.++++++.+.... +...+..++..|...++.++|++.++++...+......+..+|.. .+
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcc
Confidence 333355777889999999999999997543 567778889999999999999999999987444333334444444 56
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh-----------------h---------hcC
Q 008097 162 NLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ-----------------G---------RLG 215 (577)
Q Consensus 162 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----------------~---------~~g 215 (577)
+..+|++.++++.+.. +-+...+..+..++.+.|-...|.++...-... . ...
T Consensus 184 ~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~ 262 (822)
T PRK14574 184 RNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETE 262 (822)
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence 6666999999999874 335677788889999999988888776543322 0 111
Q ss_pred C---hhHHHHHHHHHHHc-CCCCCh-hh----HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC
Q 008097 216 K---VKGGCRFLKEMERK-GCLPNV-DT----YNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGR 286 (577)
Q Consensus 216 ~---~~~a~~~~~~~~~~-~~~p~~-~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 286 (577)
+ .+.|+.-++.+... +..|.. .. .--.+-++...|++.++++.|+.+...|.+....+-..+.++|...++
T Consensus 263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence 1 12233333333321 111211 11 112233444555555555555555555544333455555555555555
Q ss_pred hHHHHHHHHHHHhccCC---CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCcee-hHHHHHHhhhcCCHHHHHH
Q 008097 287 IDDGLKILQLMEDSKEG---SKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVD-RSLKILGFCVDGNVEDAKR 362 (577)
Q Consensus 287 ~~~a~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~ 362 (577)
+++|..++..+....+. .+++......|..++...+++++|..+++.+.+..|..+. +.. .
T Consensus 343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~----------~----- 407 (822)
T PRK14574 343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL----------P----- 407 (822)
T ss_pred cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC----------C-----
Confidence 55555555555443211 0111222344555555555555555555555543331000 000 0
Q ss_pred HHHHHHHcCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccc
Q 008097 363 CFDQMIEEGGVPNVV-IYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGI 441 (577)
Q Consensus 363 ~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~ 441 (577)
.....||-. .+..++..+...|+..+|++.++++.... +-|......+.+.+...|.+.+|.+.++ ...
T Consensus 408 ------~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k-~a~-- 477 (822)
T PRK14574 408 ------GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELK-AVE-- 477 (822)
T ss_pred ------CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHh--
Confidence 000112211 22334455566666666666666665532 2255566666666666666666666665 333
Q ss_pred CCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 442 GRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 442 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
.+.| +.......+..+...|++++|..+.+...+
T Consensus 478 --~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 478 --SLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred --hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 1345 445555666666666666666666666653
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=1.3e-15 Score=162.36 Aligned_cols=431 Identities=10% Similarity=0.010 Sum_probs=269.4
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHH
Q 008097 7 SPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYA 85 (577)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~ 85 (577)
-+.++....-.+......|+.++|++++....... +.+...+..+...+... ++++|..+|+ ...... +.+...+.
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~-~al~~~-P~~~~a~~ 87 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQ-KALSLE-PQNDDYQR 87 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhC-CCCHHHHH
Confidence 46677788888899999999999999999987532 23555677787788777 9999999999 444321 23455667
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC--C-CceeHHHHHHHHHhcCC
Q 008097 86 ILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--P-NDVTFSILICAYCKEEN 162 (577)
Q Consensus 86 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~ 162 (577)
.+...+...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+ | +...+..+...+...+.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 77788889999999999999998873 33555 88888899999999999999999875 3 34456667778888899
Q ss_pred hHHHHHHHHHHHhCCCCCCHh------hHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCCh---hHHHHHHHHHHHc-CC
Q 008097 163 LVNALVLLEKSFSFGFVPDVV------TITKVLELLCSVGRVMDAVEILEESGEQGRLGKV---KGGCRFLKEMERK-GC 232 (577)
Q Consensus 163 ~~~A~~~~~~m~~~g~~~~~~------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~---~~a~~~~~~~~~~-~~ 232 (577)
.++|+..+++... .|+.. ....++......+. ...+++ ++|+..++.+... ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~--------------~~~~r~~~ad~Al~~~~~ll~~~~~ 228 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR--------------SEKERYAIADRALAQYDALEALWHD 228 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc--------------ChhHHHHHHHHHHHHHHHHHhhccc
Confidence 9999998886653 33310 01111111111110 011111 3445555555543 11
Q ss_pred CCChh-hH----HHHHHHHHhcCChhHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC
Q 008097 233 LPNVD-TY----NILISSYCETGVLDSALDVFNDMKIDGIS-WNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG 306 (577)
Q Consensus 233 ~p~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 306 (577)
.|+.. .+ ...+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|...|+.+....+...+
T Consensus 229 ~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~ 307 (765)
T PRK10049 229 NPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIAD 307 (765)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCC
Confidence 22221 11 11133445678888888888888876532 322 2222466788888888888888887765322111
Q ss_pred -CcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC---HhhHHHH
Q 008097 307 -RISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN---VVIYDCL 382 (577)
Q Consensus 307 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l 382 (577)
.......+..++.+.|++++|...++.+....|........ . ...|+ ...+..+
T Consensus 308 ~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~-------------------~---~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 308 LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS-------------------P---TSIPNDDWLQGQSLL 365 (765)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC-------------------C---CCCCCchHHHHHHHH
Confidence 12335556667788888888888888887765532210000 0 00123 1234455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHH
Q 008097 383 IHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCE 461 (577)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~ 461 (577)
...+...|+.++|+++++++.... +-+...+..+...+...|++++|++.+++.+. +.| +...+..++..+.+
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~-----l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV-----LEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCChHHHHHHHHHHHH
Confidence 566666677777777777766531 22444566666666677777777777764443 445 35555666666667
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 008097 462 KGGFQSASMLLVQMVGKGILPDYLTWNSL 490 (577)
Q Consensus 462 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 490 (577)
.|++++|..+++++.+ ..|+....-.|
T Consensus 440 ~~~~~~A~~~~~~ll~--~~Pd~~~~~~~ 466 (765)
T PRK10049 440 LQEWRQMDVLTDDVVA--REPQDPGVQRL 466 (765)
T ss_pred hCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 7777777777777764 34554433333
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=9.1e-16 Score=160.67 Aligned_cols=400 Identities=14% Similarity=0.028 Sum_probs=267.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC--C-CceeHHHHHHHHHhc
Q 008097 84 YAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--P-NDVTFSILICAYCKE 160 (577)
Q Consensus 84 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 160 (577)
+......+.+.|++++|...|++.++. .|+...|..+..+|.+.|++++|+..+++..+ | +...|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 334555667788888888888887764 45667777788888888888888888887764 2 344677777788888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhh--hcCChhHHHHHHHHHHH--------c
Q 008097 161 ENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQG--RLGKVKGGCRFLKEMER--------K 230 (577)
Q Consensus 161 ~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~g~~~~a~~~~~~~~~--------~ 230 (577)
|++++|+..|......+...+. ....++..+.. ..+........+.. ........-.++..... .
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 8888888777665443211111 11111111111 11111111111110 00000000001110000 0
Q ss_pred --CCCCC-hhhHHHHHHHH---HhcCChhHHHHHHHHHHHCC-CCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Q 008097 231 --GCLPN-VDTYNILISSY---CETGVLDSALDVFNDMKIDG-ISW-NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE 302 (577)
Q Consensus 231 --~~~p~-~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 302 (577)
...|+ ...+..+...+ ...+++++|...|+.....+ ..| +...+..+...+...|++++|...++.....++
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 00010 00111111111 22468999999999998764 223 456678888888999999999999999987633
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 008097 303 GSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDC 381 (577)
Q Consensus 303 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 381 (577)
. ....|..+...+...|++++|...|+++.+..|+ ...+..+...|...|++++|...|++..+.. +.+...|..
T Consensus 363 ~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~ 438 (615)
T TIGR00990 363 R---VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQ 438 (615)
T ss_pred C---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHH
Confidence 2 4557888889999999999999999999887775 4667778888999999999999999999863 335777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCc-cc-------H
Q 008097 382 LIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGS-GH-------Y 452 (577)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~-~~-------~ 452 (577)
+...+.+.|++++|+..|++.++. .| +...++.+...+...|++++|...|++.+. +.|+. .. +
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~-----l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE-----LEKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh-----cCCccccccccHHHHH
Confidence 999999999999999999999874 35 467888899999999999999999996665 33421 11 1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcchHHHH
Q 008097 453 SPLIKALCEKGGFQSASMLLVQMVGKGILPDY-LTWNSLLICLSQQTTWLLL 503 (577)
Q Consensus 453 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~ 503 (577)
+.....+...|++++|.+++++..+ +.|+. ..+..+...+...|+.+.+
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHH
Confidence 2222334457999999999999875 45654 5688888889988887643
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=9.2e-16 Score=163.53 Aligned_cols=396 Identities=13% Similarity=0.042 Sum_probs=248.7
Q ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 008097 49 FNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLC 127 (577)
Q Consensus 49 ~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 127 (577)
..-.+...... +.++|+++|. ...... +.+...+..+..++.+.|++++|.+++++.++.. +.+...+..+...+.
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~-~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~ 94 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYN-RYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH-HHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33444445555 9999999998 554322 3455568888899999999999999999998863 335667788889999
Q ss_pred hcCCHhHHHHHHHhccC--C-CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 008097 128 KNGKVGRARSLMSDMEE--P-NDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEI 204 (577)
Q Consensus 128 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 204 (577)
..|++++|...+++..+ | +.. |..+...+...|+.++|+..++++.+... .+...+..+..++...+..+.|.+.
T Consensus 95 ~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHH
Confidence 99999999999999874 3 445 88888899999999999999999988643 2455556677788888888888877
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH-----HhcCCh---hHHHHHHHHHHHC-CCCcCHH-HH
Q 008097 205 LEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSY-----CETGVL---DSALDVFNDMKID-GISWNFV-TY 274 (577)
Q Consensus 205 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~-----~~~g~~---~~A~~~~~~m~~~-g~~~~~~-~~ 274 (577)
++.+.... ....... ......++..+ ...+++ ++|+..++.+.+. ...|+.. .+
T Consensus 173 l~~~~~~p---~~~~~l~-------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~ 236 (765)
T PRK10049 173 IDDANLTP---AEKRDLE-------------ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY 236 (765)
T ss_pred HHhCCCCH---HHHHHHH-------------HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence 64432100 0000000 00011111111 112223 5666666666643 1122211 11
Q ss_pred H----HHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHH
Q 008097 275 D----TLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILG 350 (577)
Q Consensus 275 ~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~ 350 (577)
. ..+.++...|++++|+..|+.+.+..+.. |+. ....+...|...|++++|+..|+++.+..|....
T Consensus 237 ~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~-P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~------- 307 (765)
T PRK10049 237 QRARIDRLGALLARDRYKDVISEYQRLKAEGQII-PPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIAD------- 307 (765)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCC-CHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCC-------
Confidence 1 11223345567777777777666541111 111 1111344555555555555555554443222100
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----------CCCCH---HHHHH
Q 008097 351 FCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHG-----------YLPIA---STFNT 416 (577)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~~~~~ 416 (577)
.....+..+..++...|++++|.++++++.+.. -.|+. ..+..
T Consensus 308 -----------------------~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~ 364 (765)
T PRK10049 308 -----------------------LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSL 364 (765)
T ss_pred -----------------------CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHH
Confidence 011233444445556666666666666655421 12442 24556
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 008097 417 VLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPD-YLTWNSLLICL 494 (577)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~ 494 (577)
+...+...|+.++|+..+++... ..| +...+..+..++...|++++|++.+++..+ +.|+ ...+..+....
T Consensus 365 ~a~~l~~~g~~~eA~~~l~~al~-----~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 365 LSQVAKYSNDLPQAEMRARELAY-----NAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHH
Confidence 77788899999999999995444 356 778899999999999999999999999984 5677 45666666677
Q ss_pred HhcchHHHHH
Q 008097 495 SQQTTWLLLL 504 (577)
Q Consensus 495 ~~~~~~~~~~ 504 (577)
...++++.++
T Consensus 438 l~~~~~~~A~ 447 (765)
T PRK10049 438 LDLQEWRQMD 447 (765)
T ss_pred HHhCCHHHHH
Confidence 7778776544
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=6.2e-15 Score=147.61 Aligned_cols=458 Identities=12% Similarity=0.056 Sum_probs=288.2
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCH--h
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTP--SLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDD--Y 82 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~--~ 82 (577)
+-+|.+.+.|.+.|.-.|++..+..+...+....... -...|-.+-++|-.. ++++|...|- .-. +..+|. .
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~-~s~--k~~~d~~~l 343 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM-ESL--KADNDNFVL 343 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH-HHH--ccCCCCccc
Confidence 3456666666666666666666666666665422111 112244444555444 6666666665 222 223333 2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC----CHhHHHHHHHhccCC---CceeHHHHHH
Q 008097 83 TYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNG----KVGRARSLMSDMEEP---NDVTFSILIC 155 (577)
Q Consensus 83 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~ 155 (577)
.+.-+.+.+...|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..++.+..++ |...|-.+..
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laq 422 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQ 422 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 33345556666666666666666666642 234445555555555554 345555555555443 3334444444
Q ss_pred HHHhcCChHHHHHHHHHH----HhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHH--
Q 008097 156 AYCKEENLVNALVLLEKS----FSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMER-- 229 (577)
Q Consensus 156 ~~~~~~~~~~A~~~~~~m----~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~-- 229 (577)
.+... +...++..|... ...+-.+.+...+.+.......|.++.|...|..+... ......
T Consensus 423 l~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~------------~~~~~n~d 489 (1018)
T KOG2002|consen 423 LLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK------------LLEVANKD 489 (1018)
T ss_pred HHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh------------hhhhcCcc
Confidence 44333 333335444433 23344455666666666666677777666665554332 110000
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHH-HHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCc
Q 008097 230 KGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVT-YDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRI 308 (577)
Q Consensus 230 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 308 (577)
.|-.+++.+--.+...+-..++++.|.+.|..+.+. .|+-+. |.-+..+--..+...+|...+..+... ...++
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~---d~~np 564 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI---DSSNP 564 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc---ccCCc
Confidence 011122222233445556678999999999999876 455433 333332333457888999999988875 33367
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCCceehHHHHHHhh------------hcCCHHHHHHHHHHHHHcCCC
Q 008097 309 SPYNSVLYGLYRENQQDEALEYLKQMEKL---FPRAVDRSLKILGFC------------VDGNVEDAKRCFDQMIEEGGV 373 (577)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~------------~~g~~~~A~~~~~~~~~~~~~ 373 (577)
..++.+...+.+...+..|.+-|..+.+. .+|..+.-.|...|. ..+..++|+++|.++++. .+
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dp 643 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN-DP 643 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-Cc
Confidence 77888888999999999999988777653 244444444444333 225678899999999986 44
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHH
Q 008097 374 PNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYS 453 (577)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~ 453 (577)
.|...-|-+.-.++..|++.+|..+|.+..+... -+..+|..+...|..+|++..|+++|+..++ .+.-.-++.+..
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk--kf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLK--KFYKKNRSEVLH 720 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHH--HhcccCCHHHHH
Confidence 5888888999999999999999999999997653 2344788899999999999999999998887 555555889999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008097 454 PLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLL 491 (577)
Q Consensus 454 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 491 (577)
+|..++.++|.+.+|.+.+.........-..+.+|..+
T Consensus 721 ~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 99999999999999999988887532222234455443
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.5e-13 Score=137.84 Aligned_cols=431 Identities=14% Similarity=0.054 Sum_probs=262.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC--CcchHHHHHHHHHhcCCHhHHHHH
Q 008097 61 IDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKP--NSVIYNTLIHSLCKNGKVGRARSL 138 (577)
Q Consensus 61 ~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~ 138 (577)
+..+..++.......+ -|+...+.|.+-+.-.|++..++.+...++..-... -...|-.+.++|-..|++++|...
T Consensus 252 ~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 4445555542222222 244555666666666777777777766666543111 112345566667777777777777
Q ss_pred HHhccC--CCc--eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----CHhHHHHHHHHHHH
Q 008097 139 MSDMEE--PND--VTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVG----RVMDAVEILEESGE 210 (577)
Q Consensus 139 ~~~~~~--~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~ 210 (577)
|-+..+ +|. ..+--+...|.+.|+.+.+...|+...+.. +-+..|...+...|...+ ..+.|..++....+
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 666554 222 233445566777777777777777766542 223455555555555543 34455555444443
Q ss_pred h--------------hhcCChhHHHHHHHHH----HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCc
Q 008097 211 Q--------------GRLGKVKGGCRFLKEM----ERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKID---GISW 269 (577)
Q Consensus 211 ~--------------~~~g~~~~a~~~~~~~----~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~~ 269 (577)
. ...++...++..|... ...+-.+.....|.+...+...|.+++|...|...... ...+
T Consensus 409 ~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 409 QTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred cccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 3 2233333334333332 23344456666777777777777777777777776543 1122
Q ss_pred CH------HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCce
Q 008097 270 NF------VTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLF-PRAV 342 (577)
Q Consensus 270 ~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 342 (577)
|. .+--.+...+-..++.+.|.+.|..+....|+ -+..|-.++.+....+...+|...+..+.+.. .++.
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~---YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ 565 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG---YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPN 565 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch---hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcH
Confidence 22 12223444455556777777777777765332 22233333323333456677777777776643 3445
Q ss_pred ehHHHHHHhhhcCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCC
Q 008097 343 DRSLKILGFCVDGNVEDAKRCFDQMIEE-GGVPNVVIYDCLIHAYCQ------------EERVREASELMKEMTGHGYLP 409 (577)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p 409 (577)
.++.+...|.+...+..|..-|+.+.+. ...+|+.+.-+|...|.+ .+..++|+++|.+.++.. +-
T Consensus 566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pk 644 (1018)
T KOG2002|consen 566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PK 644 (1018)
T ss_pred HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cc
Confidence 5566666777888888888877777665 223566666666665543 245788999999988743 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHH
Q 008097 410 IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGI-LPDYLTWN 488 (577)
Q Consensus 410 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~ 488 (577)
|...-+.+.-.++..|++.+|..+|. ..+ +. ..-...+|..+.++|...|++-.|.++|+...+.-. +-+..+..
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFs-qVr--Ea-~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFS-QVR--EA-TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHH-HHH--HH-HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 77777888888899999999999999 555 21 223567888999999999999999999998776533 34567788
Q ss_pred HHHHHHHhcchHHH
Q 008097 489 SLLICLSQQTTWLL 502 (577)
Q Consensus 489 ~ll~~~~~~~~~~~ 502 (577)
.|-.++...|.+..
T Consensus 721 ~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQE 734 (1018)
T ss_pred HHHHHHHHhhhHHH
Confidence 88888887777643
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=4.6e-13 Score=122.39 Aligned_cols=306 Identities=17% Similarity=0.231 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHH--hcCCHhHH-HHHHHHHHhCC-----------
Q 008097 46 LKIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDDYTYAILMKGLC--LTNRVGDG-FKLLHVMKSRG----------- 111 (577)
Q Consensus 46 ~~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g----------- 111 (577)
+++=|.|+...+....+++.-+|+ .|...|+..+...-..|++..+ ...++--+ ++-|-.|.+.|
T Consensus 116 V~~E~nL~kmIS~~EvKDs~ilY~-~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKMISSREVKDSCILYE-RMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHHHhhcccchhHHHHH-HHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 344555666555556666666666 6666666555544444443322 22222111 11222222222
Q ss_pred --------CCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC----CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 008097 112 --------VKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE----PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFV 179 (577)
Q Consensus 112 --------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 179 (577)
.+.+..++..+|.+.++-...++|.+++++-.+ -+..+||.+|.+-.- ....++..+|....++
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcC
Confidence 123555666777777777777777777766553 344556666543221 1225566666666667
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH-HHHH
Q 008097 180 PDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDS-ALDV 258 (577)
Q Consensus 180 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~ 258 (577)
||..|+|+++++..+.|+++.|+.. |.+++.+|.+-|+.|...+|..+|..+++.+++.+ |..+
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~a---------------alqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~ 335 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKA---------------ALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSW 335 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHH---------------HHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHH
Confidence 7777777777777777776666654 34446666677777777777777776666666543 3333
Q ss_pred HHHHHHC--C--C----CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC--CCCCCc---ccHHHHHHHHHhcCCHH
Q 008097 259 FNDMKID--G--I----SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE--GSKGRI---SPYNSVLYGLYRENQQD 325 (577)
Q Consensus 259 ~~~m~~~--g--~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~---~~~~~li~~~~~~g~~~ 325 (577)
+.++... | + +.|..-|...++.|.+..+.+.|.++...+...+. .+.|+. .-|..+....++....+
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~ 415 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESID 415 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443321 1 1 12344455666666666666666666665543210 011111 12344555555666666
Q ss_pred HHHHHHHHHhh--cCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 008097 326 EALEYLKQMEK--LFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEG 371 (577)
Q Consensus 326 ~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 371 (577)
.-...++.|.- ..|+..+...++.+..-.+.++-.-+++..+...|
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 66666666543 34555555555666556666665556655555543
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=1.5e-13 Score=126.26 Aligned_cols=475 Identities=15% Similarity=0.103 Sum_probs=316.1
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHH-HHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHh----
Q 008097 9 PDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNS-ILDVLVKE-DIDLARAFYRKKMMASGVQGDDY---- 82 (577)
Q Consensus 9 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~---- 82 (577)
.+-.++..|.+-|.......+|+..++-+.+...-|+.-.... +-..+.+. .+..|++.|+ .....-+..+-.
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyr-maldqvpsink~~rik 277 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYR-MALDQVPSINKDMRIK 277 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHH-HHHhhccccchhhHHH
Confidence 4455677788888888899999999999877666666543332 22445566 8999999998 333322222222
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC----------------CC
Q 008097 83 TYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE----------------PN 146 (577)
Q Consensus 83 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------------~~ 146 (577)
..+.+-..+.+.|.++.|...|+...+. .|+..+--.|+-.+.--|+-++..+.|.+|.. |+
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 2333344567899999999999998875 47776666666677778999999999999862 22
Q ss_pred ceeHHHHH-----HHHHhcC--ChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCCHhHHHHH-HHHHHHhhhcCCh
Q 008097 147 DVTFSILI-----CAYCKEE--NLVNALVLLEKSFSFGFVPDVV-TITKVLELLCSVGRVMDAVEI-LEESGEQGRLGKV 217 (577)
Q Consensus 147 ~~~~~~li-----~~~~~~~--~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~~~g~~ 217 (577)
....|.-| .-+-+.+ +.++++-.--++..--+.||.. -+.--+..+-.....+.|.++ ...+....+.|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 22222222 2222221 2233333333333322334321 122222222223333333332 1223333788999
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHH
Q 008097 218 KGGCRFLKEMERKGCLPNVDTYNILISSYCE--TGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQ 295 (577)
Q Consensus 218 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 295 (577)
+.|.++++-.....-+.-...-|.|-..+.- -.++.+|.+.-+...... +-|....+.-.......|++++|.+.++
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 9999998888776322222222333222222 335677777766665332 2233333333333445799999999999
Q ss_pred HHHhccCCCCCCcccHHHHH---HHHHhcCCHHHHHHHHHHHhhcC-CCceehHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 008097 296 LMEDSKEGSKGRISPYNSVL---YGLYRENQQDEALEYLKQMEKLF-PRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEG 371 (577)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 371 (577)
+.... |...-.+|. -.+-..|++++|+++|-++..+. .+......+...|-...+...|++++.+....
T Consensus 515 eal~n------dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl- 587 (840)
T KOG2003|consen 515 EALNN------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL- 587 (840)
T ss_pred HHHcC------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-
Confidence 99876 443333333 34677899999999999988753 34455666777888889999999999888775
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCccc
Q 008097 372 GVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGH 451 (577)
Q Consensus 372 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~ 451 (577)
++.|+....-+...|-+.|+-..|.+.+-+--+. ++.|..|...|..-|....-+++++.+|++... +.|+..-
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal-----iqp~~~k 661 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-----IQPNQSK 661 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-----cCccHHH
Confidence 6678899999999999999999999887665442 455788888888888889999999999996544 8999999
Q ss_pred HHHHHHHH-HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchHH
Q 008097 452 YSPLIKAL-CEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWL 501 (577)
Q Consensus 452 ~~~li~~~-~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 501 (577)
|..||..| .|.|++++|.++++....+ +..|.....-|+.-|..-|-.+
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 99988665 5689999999999999865 7788888898988887666443
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=1.2e-12 Score=137.33 Aligned_cols=421 Identities=12% Similarity=0.028 Sum_probs=285.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCH--hhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHH--
Q 008097 47 KIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDD--YTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTL-- 122 (577)
Q Consensus 47 ~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-- 122 (577)
..|...|..+-+.++..|+..|. ...+. .|+. ..+ .++..+...|+.++|+..+++.... -+...+..+
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~-qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p---~n~~~~~llal 108 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQ-EESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS---MNISSRGLASA 108 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH-HHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC---CCCCHHHHHHH
Confidence 44666666555558999999998 44443 3443 233 7788888889999999999998721 123333333
Q ss_pred HHHHHhcCCHhHHHHHHHhccC--C-CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh
Q 008097 123 IHSLCKNGKVGRARSLMSDMEE--P-NDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVM 199 (577)
Q Consensus 123 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 199 (577)
...|...|++++|.++|+++.+ | |...+..++..+...++.++|++.++++... .|+...+..++..+...++..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 5678888999999999999885 3 3456667778889999999999999998765 455555533333333344443
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHH-----
Q 008097 200 DAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTY----- 274 (577)
Q Consensus 200 ~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~----- 274 (577)
+|.+. ++++.+..+ -+...+..++.+..+.|-...|.++..+-... +.+...-+
T Consensus 187 ~AL~~-------------------~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~ 245 (822)
T PRK14574 187 DALQA-------------------SSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDA 245 (822)
T ss_pred HHHHH-------------------HHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHH
Confidence 45554 555555532 25666777888888888888888877764422 12221111
Q ss_pred -HHHHHHH-----HcCCC---hHHHHHHHHHHHhccCCCCCCcccH----HHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 008097 275 -DTLIRGL-----CSGGR---IDDGLKILQLMEDSKEGSKGRISPY----NSVLYGLYRENQQDEALEYLKQMEKLFPRA 341 (577)
Q Consensus 275 -~~ll~~~-----~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 341 (577)
...+..- ....+ .+.|..-++.+...-+..++....| --.+-++...++..++++.++.+.......
T Consensus 246 ~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~ 325 (822)
T PRK14574 246 AAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM 325 (822)
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC
Confidence 1111100 01223 3455555566555322223222222 234567888999999999999998654332
Q ss_pred --eehHHHHHHhhhcCCHHHHHHHHHHHHHcC-----CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------
Q 008097 342 --VDRSLKILGFCVDGNVEDAKRCFDQMIEEG-----GVPNVVIYDCLIHAYCQEERVREASELMKEMTGHG-------- 406 (577)
Q Consensus 342 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------- 406 (577)
.....+.++|...+.+++|..+|.++.... .+++......|.-+|...+++++|..+++++.+..
T Consensus 326 P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~ 405 (822)
T PRK14574 326 PDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYG 405 (822)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccC
Confidence 345677889999999999999999997652 12344446789999999999999999999998721
Q ss_pred -----CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 008097 407 -----YLPIAST-FNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKG 479 (577)
Q Consensus 407 -----~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 479 (577)
-.||-.. +..++..+...|+..+|++.+++.+. ..| |......+.+++...|++.+|.+.++... .
T Consensus 406 ~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~-----~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~--~ 478 (822)
T PRK14574 406 LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS-----TAPANQNLRIALASIYLARDLPRKAEQELKAVE--S 478 (822)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh--h
Confidence 1133333 44456678899999999999994444 567 99999999999999999999999998877 3
Q ss_pred CCCCH-HHHHHHHHHHHhcchHHHHH
Q 008097 480 ILPDY-LTWNSLLICLSQQTTWLLLL 504 (577)
Q Consensus 480 ~~p~~-~~~~~ll~~~~~~~~~~~~~ 504 (577)
+.|+. .+......+....+++..++
T Consensus 479 l~P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 479 LAPRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred hCCccHHHHHHHHHHHHhhhhHHHHH
Confidence 57774 45566666777777776543
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.7e-13 Score=125.19 Aligned_cols=381 Identities=17% Similarity=0.132 Sum_probs=270.7
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHH--hcCCHhHH-HH--------------------
Q 008097 81 DYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLC--KNGKVGRA-RS-------------------- 137 (577)
Q Consensus 81 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~~~A-~~-------------------- 137 (577)
+.+=|.|++.. ..|.+..+.-+|+.|...|.+.+..+--.|+..-+ ...++--| .+
T Consensus 116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 34566666654 56788899999999999998888777766665432 22222111 12
Q ss_pred ---HHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhc
Q 008097 138 ---LMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRL 214 (577)
Q Consensus 138 ---~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 214 (577)
++-+...+...++..||.+.|+-...+.|.++|++......+.+..+||.+|.+-+-..
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~------------------ 256 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV------------------ 256 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc------------------
Confidence 33333335667899999999999999999999999988888899999999987643221
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH----HHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHH-
Q 008097 215 GKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDS----ALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDD- 289 (577)
Q Consensus 215 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~- 289 (577)
..++..+|....+.||..|+|+++++..+.|+++. |++++.+|.+.|+.|...+|..+|..+.+-++..+
T Consensus 257 -----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 257 -----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred -----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 23457889999999999999999999999998876 46788889999999999999999999998887754
Q ss_pred HHHHHHHHHhccC--CCCC----CcccHHHHHHHHHhcCCHHHHHHHHHHHhh------cCCC---ceehHHHHHHhhhc
Q 008097 290 GLKILQLMEDSKE--GSKG----RISPYNSVLYGLYRENQQDEALEYLKQMEK------LFPR---AVDRSLKILGFCVD 354 (577)
Q Consensus 290 a~~~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~p~---~~~~~~l~~~~~~~ 354 (577)
+..++.++...-. ..+| |...+...+..|.+..+.+-|.++..-... ..|+ .+-|..+....|+.
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 5555555554211 2222 333466777888888888888877665543 2333 23356677788888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--------
Q 008097 355 GNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGN-------- 426 (577)
Q Consensus 355 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-------- 426 (577)
..++.-...|+.|.-.-.-|+..+...++++....|+++-.-+++..++..|..-+...-.-++..+++...
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~ 491 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPERE 491 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHH
Confidence 999999999999987766788888889999999999999999999988887754444444444444443331
Q ss_pred ------------HHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CCHHHHHH
Q 008097 427 ------------VGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGIL-PDYLTWNS 489 (577)
Q Consensus 427 ------------~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ 489 (577)
+.++.+.-.+.|+ . ..-.....++..-.+.|.|+.++|.+++.-+.+.+-+ |-....++
T Consensus 492 Ql~~~~ak~aad~~e~~e~~~~R~r--~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnA 563 (625)
T KOG4422|consen 492 QLQVAFAKCAADIKEAYESQPIRQR--A--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNA 563 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHH--h--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhh
Confidence 1111111111232 2 2234556789999999999999999999999755433 43344443
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=2.5e-11 Score=116.96 Aligned_cols=454 Identities=12% Similarity=0.011 Sum_probs=308.5
Q ss_pred ccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHH
Q 008097 23 RARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGF 101 (577)
Q Consensus 23 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 101 (577)
...+.++|+-++.+..++- +-+...|. +|++. .|+.|..++. ..++ .++.+...|.+....--..|+.+...
T Consensus 388 elE~~~darilL~rAvecc-p~s~dLwl----AlarLetYenAkkvLN-kaRe-~iptd~~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMDLWL----ALARLETYENAKKVLN-KARE-IIPTDREIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHHHHH----HHHHHHHHHHHHHHHH-HHHh-hCCCChhHHHHHHHHHHhcCCHHHHH
Confidence 3445555666666665542 22333333 33344 5566666665 3322 34455666665555555666666666
Q ss_pred HHHHH----HHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC------CCceeHHHHHHHHHhcCChHHHHHHHH
Q 008097 102 KLLHV----MKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE------PNDVTFSILICAYCKEENLVNALVLLE 171 (577)
Q Consensus 102 ~~~~~----~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~ 171 (577)
++..+ +...|+..+..-|-.=...+-+.|..-.+..+...... .--.||+.-...|.+.+.++-|..+|.
T Consensus 461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 65543 33456666666665555555555665555555554432 123356666666666666666666666
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh---------------hhcCChhHHHHHHHHHHHcCCCCCh
Q 008097 172 KSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ---------------GRLGKVKGGCRFLKEMERKGCLPNV 236 (577)
Q Consensus 172 ~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------~~~g~~~~a~~~~~~~~~~~~~p~~ 236 (577)
..++.- +-+...|......--..|..+.-..++..+... -..|++..|+.++.+..+.... +.
T Consensus 541 ~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-se 618 (913)
T KOG0495|consen 541 HALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SE 618 (913)
T ss_pred HHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cH
Confidence 655432 223445555555545556666666665555544 3456777777777777765443 67
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHH
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLY 316 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 316 (577)
..|-+.+..-..+.+++.|..+|.+.... .|+...|.--+..---.++.++|.++++...+. ++.-.-.|-.+..
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS---FPDFHKLWLMLGQ 693 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHHHHHHHhH
Confidence 78888889889999999999999988764 567777766665555678999999999888875 2223346778888
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCcee-hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 008097 317 GLYRENQQDEALEYLKQMEKLFPRAVD-RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREA 395 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 395 (577)
.+-+.++.+.|.+.+..-.+.-|+... |..+...--+.|.+-.|..++++..-++ +.|...|-..|..-.+.|..+.|
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHH
Confidence 899999999999999888887776554 5556666668889999999999988764 45788999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHH
Q 008097 396 SELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQM 475 (577)
Q Consensus 396 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 475 (577)
..++.+..+. .+-+...|..-|....+.++-......+++ +.-|+.+.-.+...+....+++.|.+.|.+.
T Consensus 773 ~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk--------ce~dphVllaia~lfw~e~k~~kar~Wf~Ra 843 (913)
T KOG0495|consen 773 ELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK--------CEHDPHVLLAIAKLFWSEKKIEKAREWFERA 843 (913)
T ss_pred HHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh--------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888864 444666788888777777776655555552 4457777888888888899999999999999
Q ss_pred HHCCCCCCH-HHHHHHHHHHHhcchHHH
Q 008097 476 VGKGILPDY-LTWNSLLICLSQQTTWLL 502 (577)
Q Consensus 476 ~~~~~~p~~-~~~~~ll~~~~~~~~~~~ 502 (577)
.+ +.||. .+|.-+..-..++|..+-
T Consensus 844 vk--~d~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 844 VK--KDPDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred Hc--cCCccchHHHHHHHHHHHhCCHHH
Confidence 84 45664 788888888888987653
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=2.6e-11 Score=112.55 Aligned_cols=435 Identities=12% Similarity=0.115 Sum_probs=312.1
Q ss_pred HhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhH
Q 008097 21 LGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGD 99 (577)
Q Consensus 21 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 99 (577)
=-.++++..|+.+|+..+..+ ..+...|-..+.+=.++ ....|+.+|+ .....-+..|. .|.-.+-.--..|++..
T Consensus 83 Eesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~d-RAvt~lPRVdq-lWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWD-RAVTILPRVDQ-LWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHH-HHHHhcchHHH-HHHHHHHHHHHhcccHH
Confidence 345677888999999998765 56888898888888888 9999999999 44332222232 34444555557899999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhcc--CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 008097 100 GFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDME--EPNDVTFSILICAYCKEENLVNALVLLEKSFSFG 177 (577)
Q Consensus 100 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 177 (577)
|.++|+.-.+ ..|+...|++.|+.-.+...++.|+.++++.. .|++.+|--....=.++|+...|..+|+.....
T Consensus 160 aRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~- 236 (677)
T KOG1915|consen 160 ARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF- 236 (677)
T ss_pred HHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-
Confidence 9999998887 47999999999999999999999999999865 699999988888888999999999999887653
Q ss_pred CCCCHh----hHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--
Q 008097 178 FVPDVV----TITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGV-- 251 (577)
Q Consensus 178 ~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-- 251 (577)
-.|.. .+.+...--.++..++.|.-+|+.++.....|+.++-.+-|-... -+.|+
T Consensus 237 -~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fE------------------KqfGd~~ 297 (677)
T KOG1915|consen 237 -LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFE------------------KQFGDKE 297 (677)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH------------------HHhcchh
Confidence 11222 233333333345666777777766655544333332222222221 12233
Q ss_pred -hhHHHH-----HHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCc--ccHHHHHHH------
Q 008097 252 -LDSALD-----VFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRI--SPYNSVLYG------ 317 (577)
Q Consensus 252 -~~~A~~-----~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~li~~------ 317 (577)
.++++- -|+.+...+ +.|-.+|--.+..-...|+.+...++|+..... ++|-. ..|...|..
T Consensus 298 gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan---vpp~~ekr~W~RYIYLWinYal 373 (677)
T KOG1915|consen 298 GIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN---VPPASEKRYWRRYIYLWINYAL 373 (677)
T ss_pred hhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc---CCchhHHHHHHHHHHHHHHHHH
Confidence 222221 233344332 557788888888888889999999999998874 33321 123333322
Q ss_pred --HHhcCCHHHHHHHHHHHhhcCC-CceehHHHHHHhh----hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008097 318 --LYRENQQDEALEYLKQMEKLFP-RAVDRSLKILGFC----VDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE 390 (577)
Q Consensus 318 --~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (577)
-....+.+.+.++++...++-| ...|+.-+-.+|+ ++.++..|.+++...+. ..|-..++...|..-.+.+
T Consensus 374 yeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 374 YEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHh
Confidence 2346888999999999988655 5577766655554 77899999999998875 6788899999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHH
Q 008097 391 RVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSAS 469 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 469 (577)
.++.+..++++.++.+ | |..+|......=...|+.+.|..+|+-.+. .....--...|-..|+.-...|.++.|.
T Consensus 452 efDRcRkLYEkfle~~--Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~--qp~ldmpellwkaYIdFEi~~~E~ekaR 527 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLEFS--PENCYAWSKYAELETSLGDTDRARAIFELAIS--QPALDMPELLWKAYIDFEIEEGEFEKAR 527 (677)
T ss_pred hHHHHHHHHHHHHhcC--hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc--CcccccHHHHHHHhhhhhhhcchHHHHH
Confidence 9999999999999854 5 667888877777889999999999994444 2222223456788888888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH
Q 008097 470 MLLVQMVGKGILPDYLTWNSLLI 492 (577)
Q Consensus 470 ~~~~~m~~~~~~p~~~~~~~ll~ 492 (577)
.+++++++. .+-..+|-++..
T Consensus 528 ~LYerlL~r--t~h~kvWisFA~ 548 (677)
T KOG1915|consen 528 ALYERLLDR--TQHVKVWISFAK 548 (677)
T ss_pred HHHHHHHHh--cccchHHHhHHH
Confidence 999999864 445557877644
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.62 E-value=5e-10 Score=108.17 Aligned_cols=447 Identities=10% Similarity=0.011 Sum_probs=338.4
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 008097 26 MINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLL 104 (577)
Q Consensus 26 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 104 (577)
+...=.+++...++. ++.++..|...+. . +.++|+-++. ...+. -|.. .-|.-++++...++.|.+++
T Consensus 361 ~~~~K~RVlRKALe~-iP~sv~LWKaAVe----lE~~~darilL~-rAvec--cp~s---~dLwlAlarLetYenAkkvL 429 (913)
T KOG0495|consen 361 DTKNKKRVLRKALEH-IPRSVRLWKAAVE----LEEPEDARILLE-RAVEC--CPQS---MDLWLALARLETYENAKKVL 429 (913)
T ss_pred HHHHHHHHHHHHHHh-CCchHHHHHHHHh----ccChHHHHHHHH-HHHHh--ccch---HHHHHHHHHHHHHHHHHHHH
Confidence 344456677777765 3456777766443 4 6677888887 33332 2222 23555677888899999999
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC--------CCceeHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 008097 105 HVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--------PNDVTFSILICAYCKEENLVNALVLLEKSFSF 176 (577)
Q Consensus 105 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 176 (577)
+...+. ++-+..+|.+-...--.+|+.+...++.++-.. -+...|-.=...|-..|..--+..+.......
T Consensus 430 NkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi 508 (913)
T KOG0495|consen 430 NKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI 508 (913)
T ss_pred HHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh
Confidence 999885 667888998888888889999999888877541 34445666666777778887777787777777
Q ss_pred CCCCC--HhhHHHHHHHHHhcCCHhHHHHHHHHHHHh---------------hhcCChhHHHHHHHHHHHcCCCCChhhH
Q 008097 177 GFVPD--VVTITKVLELLCSVGRVMDAVEILEESGEQ---------------GRLGKVKGGCRFLKEMERKGCLPNVDTY 239 (577)
Q Consensus 177 g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 239 (577)
|+.-. ..||..-...|.+.+.++-|+.+|..+++. ...|..++-..+|++....-. .....|
T Consensus 509 gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lw 587 (913)
T KOG0495|consen 509 GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILW 587 (913)
T ss_pred ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHH
Confidence 76543 468888889999999999999999888877 466788888888888887633 356677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHH
Q 008097 240 NILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLY 319 (577)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 319 (577)
-.....+-..|+...|..++.+..+.. +-+...|-.-+..-..+..++.|+.+|.+.... .|+...|..-+..-.
T Consensus 588 lM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~----sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI----SGTERVWMKSANLER 662 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc----CCcchhhHHHhHHHH
Confidence 777778888999999999999988764 336778888888899999999999999988754 346677777777777
Q ss_pred hcCCHHHHHHHHHHHhhcCCCcee-hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 008097 320 RENQQDEALEYLKQMEKLFPRAVD-RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASEL 398 (577)
Q Consensus 320 ~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 398 (577)
-.+..++|++++++..+..|+..- |..+...+-+.++++.|...|..=.+. .+-.+..|-.+...--+.|.+-+|..+
T Consensus 663 ~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSI 741 (913)
T ss_pred HhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHH
Confidence 789999999999999998888654 556667788889999999988877664 444466788888888888999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 008097 399 MKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGK 478 (577)
Q Consensus 399 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 478 (577)
|++..-.+ +-|...|...++.=.+.|..++|..+..+.++ + ++.+...|..-|.+..+.++-..+.+.+++.
T Consensus 742 ldrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--e--cp~sg~LWaEaI~le~~~~rkTks~DALkkc--- 813 (913)
T KOG0495|consen 742 LDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--E--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--- 813 (913)
T ss_pred HHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--h--CCccchhHHHHHHhccCcccchHHHHHHHhc---
Confidence 99988654 33677899999999999999999999887777 2 4446778899999998888877776666665
Q ss_pred CCCCCHHHHHHHHHHHHhcchHH
Q 008097 479 GILPDYLTWNSLLICLSQQTTWL 501 (577)
Q Consensus 479 ~~~p~~~~~~~ll~~~~~~~~~~ 501 (577)
+-|+.+.-++-..+......+
T Consensus 814 --e~dphVllaia~lfw~e~k~~ 834 (913)
T KOG0495|consen 814 --EHDPHVLLAIAKLFWSEKKIE 834 (913)
T ss_pred --cCCchhHHHHHHHHHHHHHHH
Confidence 335555555555555444443
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=1.7e-12 Score=119.39 Aligned_cols=409 Identities=14% Similarity=0.085 Sum_probs=238.0
Q ss_pred HHHHHhccCChhHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHH
Q 008097 17 VIRGLGRARMINDVVKATDLVSRFNMTPSLK----IFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGL 91 (577)
Q Consensus 17 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~ 91 (577)
+.+.+.+..++..|++.+.-.++.-|..+-. ..|.+--.+.+. .+++|+.-|+..|.. .||-.+-..|+-++
T Consensus 243 igni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~ 319 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICA 319 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhh
Confidence 4456778888999999998887754433322 233333345666 899999999955543 57766655556566
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCcchH--------HHHHHHHHhcC-----------CHhHHHHHHHhcc----CCCce
Q 008097 92 CLTNRVGDGFKLLHVMKSRGVKPNSVIY--------NTLIHSLCKNG-----------KVGRARSLMSDME----EPNDV 148 (577)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~--------~~li~~~~~~g-----------~~~~A~~~~~~~~----~~~~~ 148 (577)
...|+-++..+.|.+|+.....||..-| ..|+.--.+.. +.++++-.--++. .||-.
T Consensus 320 f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa 399 (840)
T KOG2003|consen 320 FAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA 399 (840)
T ss_pred eecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh
Confidence 6778999999999999875433332211 22222222221 1222222222222 22211
Q ss_pred ---eHH----------H--------HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh--cCCHhHHHHHH
Q 008097 149 ---TFS----------I--------LICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCS--VGRVMDAVEIL 205 (577)
Q Consensus 149 ---~~~----------~--------li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~g~~~~a~~~~ 205 (577)
-|. - -..-|.++|+++.|+++++-+.+..-+.-...-+.|-..+.- -.++..|.++-
T Consensus 400 ~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqya 479 (840)
T KOG2003|consen 400 AGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYA 479 (840)
T ss_pred cccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHH
Confidence 111 0 012467788888888888777654332222222222222222 23444444443
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHH-----HHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008097 206 EESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILI-----SSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRG 280 (577)
Q Consensus 206 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 280 (577)
+.++ +..-||.-. ..-..+|++++|...|++.+...-......|+ +.-.
T Consensus 480 d~al-------------------------n~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt 533 (840)
T KOG2003|consen 480 DIAL-------------------------NIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLT 533 (840)
T ss_pred HHHh-------------------------cccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hccc
Confidence 3222 222222211 12234577777777777776542222222222 2233
Q ss_pred HHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CceehHHHHHHhhhcCCHHH
Q 008097 281 LCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFP-RAVDRSLKILGFCVDGNVED 359 (577)
Q Consensus 281 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 359 (577)
+-..|++++|.+.|-++... ...+..+...+.+.|....+..+|++++.+.....| ++...+.+...|-+.|+-..
T Consensus 534 ~e~~~~ldeald~f~klh~i---l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAI---LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhh
Confidence 55667777777777665432 111455566666777777777777777777776555 34556667777777777777
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHhh
Q 008097 360 AKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGL-CRQGNVGTALKLVEEDM 438 (577)
Q Consensus 360 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~m 438 (577)
|.+.+-.-.+. ++-|..+..-+..-|....-+++++.+|++.-- +.|+..-|..++..| .+.|++.+|..+++ ..
T Consensus 611 afq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk-~~ 686 (840)
T KOG2003|consen 611 AFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYK-DI 686 (840)
T ss_pred hhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHH-HH
Confidence 77666554443 455666777677777777777888888877654 568888777777666 46788888888877 44
Q ss_pred cccCCCCCCCcccHHHHHHHHHHcCC
Q 008097 439 RGIGRGSLPGSGHYSPLIKALCEKGG 464 (577)
Q Consensus 439 ~~~~~~~~p~~~~~~~li~~~~~~g~ 464 (577)
. ..++.|.....-|+..++..|.
T Consensus 687 h---rkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 687 H---RKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred H---HhCccchHHHHHHHHHhccccc
Confidence 3 3455577777788888777774
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.61 E-value=1.1e-10 Score=117.05 Aligned_cols=318 Identities=13% Similarity=0.048 Sum_probs=203.0
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHH
Q 008097 11 ESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMK 89 (577)
Q Consensus 11 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~ 89 (577)
....-...+.....|++++|.+++.++++..+ .+...|-.|-..|-+. +.+++...+- . ..+-.+-|...|..+-.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~l-l-AAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWL-L-AAHLNPKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHH-H-HHhcCCCChHHHHHHHH
Confidence 44455555556666999999999999988754 5777899999999888 9999988775 3 23333446678888888
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCc-eeH-------HHHHHHHHhcC
Q 008097 90 GLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPND-VTF-------SILICAYCKEE 161 (577)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~-------~~li~~~~~~~ 161 (577)
...+.|+++.|.-.|.+.++... ++....---+.+|-+.|+...|..-|.++-+.++ +.| -.+++.+...+
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 88899999999999999999753 3555555667889999999999999998876332 222 23456677777
Q ss_pred ChHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh-----------------------------
Q 008097 162 NLVNALVLLEKSFSFG-FVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ----------------------------- 211 (577)
Q Consensus 162 ~~~~A~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------------------------- 211 (577)
+.+.|.+.++.....+ -..+...++.++..+.+...++.|..........
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 7799999988877632 2345567778888888888888887766555441
Q ss_pred -------------hhcCChhHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHH
Q 008097 212 -------------GRLGKVKGGCRFLKEMERKG--CLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDT 276 (577)
Q Consensus 212 -------------~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 276 (577)
......+....+..-..... +.-++..|.-+..+|...|++.+|+.+|..+.....--+...|-.
T Consensus 375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 01111111111112222222 222334455555556666666666666665554433334455555
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008097 277 LIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQME 335 (577)
Q Consensus 277 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 335 (577)
+..+|...|..++|.+.|+.+....|+ +...--.|-..+.+.|+.++|.+.+..+.
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~p~---~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILAPD---NLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCC---chhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 555566666666666666655554222 33333444455555566666655555543
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=2.3e-11 Score=113.35 Aligned_cols=218 Identities=13% Similarity=0.096 Sum_probs=172.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHH
Q 008097 246 YCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQD 325 (577)
Q Consensus 246 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 325 (577)
+.-.|+.-.|...|+..+.....++. .|.-+..+|....+.++....|....+.++. +..+|..-...+.-.++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~---n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE---NPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC---CCchhHhHHHHHHHHHHHH
Confidence 34468888999999998876544333 2666777899999999999999999887544 6678888888888889999
Q ss_pred HHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 326 EALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 326 ~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+|..-|++...+.|+. ..+-.+..+..+.+.++++...|++..++ ++..+..|+.....+...++++.|.+.|+..++
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9999999999987754 45556666667888999999999999886 666788999999999999999999999999886
Q ss_pred CCCCCC-------HH--HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHH
Q 008097 405 HGYLPI-------AS--TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQ 474 (577)
Q Consensus 405 ~g~~p~-------~~--~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 474 (577)
. .|+ .. .--+++-.-.+ +++.+|..++.+.+. +.| ....|..|.....+.|+.++|+++|++
T Consensus 491 L--E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e-----~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 491 L--EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIE-----LDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred h--ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHc-----cCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3 343 22 22223322233 899999999997666 677 556799999999999999999999998
Q ss_pred HH
Q 008097 475 MV 476 (577)
Q Consensus 475 m~ 476 (577)
..
T Consensus 563 sa 564 (606)
T KOG0547|consen 563 SA 564 (606)
T ss_pred HH
Confidence 75
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=1.1e-11 Score=122.02 Aligned_cols=277 Identities=13% Similarity=0.081 Sum_probs=130.4
Q ss_pred cCCHhHHHHHHHhccCC--Ccee-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH--HHHHHHHhcCCHhHHHH
Q 008097 129 NGKVGRARSLMSDMEEP--NDVT-FSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTIT--KVLELLCSVGRVMDAVE 203 (577)
Q Consensus 129 ~g~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~g~~~~a~~ 203 (577)
.|+++.|++.+....+. ++.. |........+.|+++.|...|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46677776666655432 1122 222223335667777777777776543 33332222 22344555555555555
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH-------HHHHH
Q 008097 204 ILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNF-------VTYDT 276 (577)
Q Consensus 204 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~ 276 (577)
.+ +.+.+..+. +......+...|.+.|++++|..++..+.+.+..++. .+|..
T Consensus 175 ~l-------------------~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 175 GV-------------------DKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred HH-------------------HHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 43 333333221 4556666677777777777777777777765433221 12222
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCC
Q 008097 277 LIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGN 356 (577)
Q Consensus 277 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 356 (577)
++.......+.+...++++.+... .+.++.....+...+...|+.++|.+.+++..+..|+. -..++.+....++
T Consensus 235 l~~~~~~~~~~~~l~~~w~~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~--~l~~l~~~l~~~~ 309 (398)
T PRK10747 235 LMDQAMADQGSEGLKRWWKNQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDE--RLVLLIPRLKTNN 309 (398)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH--HHHHHHhhccCCC
Confidence 232222333344444444444332 12244445555555555555555555555554433322 1111222223344
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 357 VEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 357 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
.+++.+..+...+. .+-|...+.++...+.+.|++++|.+.|++..+ ..|+..++..+..++.+.|+.++|.++++
T Consensus 310 ~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 310 PEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred hHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444444443 122333344444444444555555555544444 23444444444444444555555544444
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=4.4e-10 Score=104.35 Aligned_cols=327 Identities=11% Similarity=0.056 Sum_probs=181.2
Q ss_pred CCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--hhHHHHHH
Q 008097 113 KPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDV--VTITKVLE 190 (577)
Q Consensus 113 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~ 190 (577)
..|.+.+-.....+.+.|....|+..|......-+..|.+.+....-.-+.+.+..+ . .|...|. ..=-.+..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l----~-~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL----V-VGLPSDMHWMKKFFLKK 235 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH----H-hcCcccchHHHHHHHHH
Confidence 334444433444455667777777777776655455555544433222222222211 1 1112111 11122334
Q ss_pred HHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--C
Q 008097 191 LLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGI--S 268 (577)
Q Consensus 191 ~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~ 268 (577)
++....+.+++.+-. ......|++-+...-+-...+.....++|+|+.+|+++.+... -
T Consensus 236 a~~el~q~~e~~~k~-------------------e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl 296 (559)
T KOG1155|consen 236 AYQELHQHEEALQKK-------------------ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL 296 (559)
T ss_pred HHHHHHHHHHHHHHH-------------------HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc
Confidence 555555555555432 2333444443333333334444556677777777777766521 1
Q ss_pred cCHHHHHHHHHHHHcCCChH-HHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHH
Q 008097 269 WNFVTYDTLIRGLCSGGRID-DGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSL 346 (577)
Q Consensus 269 ~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~ 346 (577)
-|..+|+.++-.-..+.++. -|..++. +. +-.+.|...+.+-|.-.++.++|...|++..+..|.. ..|+.
T Consensus 297 ~dmdlySN~LYv~~~~skLs~LA~~v~~-id------KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTL 369 (559)
T KOG1155|consen 297 DDMDLYSNVLYVKNDKSKLSYLAQNVSN-ID------KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTL 369 (559)
T ss_pred hhHHHHhHHHHHHhhhHHHHHHHHHHHH-hc------cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHH
Confidence 15566666653222211111 1222111 11 1133455556666666777777777777777766654 44666
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 008097 347 KILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQG 425 (577)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g 425 (577)
+.+-|....+...|.+-++..++- .+.|-..|-.+.++|.-.+.+.=|+-.|++... .+| |...|.+|...|.+.+
T Consensus 370 mGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~ 446 (559)
T KOG1155|consen 370 MGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLN 446 (559)
T ss_pred hhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhc
Confidence 666777777777777777777764 234666777777777777777777777777766 345 5667777777777777
Q ss_pred CHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 426 NVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 426 ~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
+.++|++.|..... . -..+...|..+.++|-+.++.++|...+++..+
T Consensus 447 ~~~eAiKCykrai~--~--~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 447 RLEEAIKCYKRAIL--L--GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cHHHHHHHHHHHHh--c--cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 77777777774444 1 122556677777777777777777776666554
No 38
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.4e-10 Score=108.82 Aligned_cols=468 Identities=12% Similarity=0.031 Sum_probs=312.5
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHH
Q 008097 10 DESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILM 88 (577)
Q Consensus 10 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll 88 (577)
+..-+..+++-+..+.++..|.-+-+++...+-.|+..- .+..++.-. +++.|..+.... . -...|..+.....
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~--~~aq~l~~~~~y~ra~~lit~~-~--le~~d~~cryL~~ 89 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIY--WLAQVLYLGRQYERAAHLITTY-K--LEKRDIACRYLAA 89 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHH--HHHHHHHhhhHHHHHHHHHHHh-h--hhhhhHHHHHHHH
Confidence 455677777777788888889888888876554454443 355666555 788887776621 1 1245777777788
Q ss_pred HHHHhcCCHhHHHHHHHHHH--hCCC-----------CCCcch----HHHHH-------HHHHhcCCHhHHHHHHHhccC
Q 008097 89 KGLCLTNRVGDGFKLLHVMK--SRGV-----------KPNSVI----YNTLI-------HSLCKNGKVGRARSLMSDMEE 144 (577)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~--~~g~-----------~~~~~~----~~~li-------~~~~~~g~~~~A~~~~~~~~~ 144 (577)
.++.+..+++.|..++.... ..++ .+|..- -+.-. ..|....+.++|+..|.+...
T Consensus 90 ~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~ 169 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL 169 (611)
T ss_pred HHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh
Confidence 88889999999998887220 0111 111111 01111 224444567777777777766
Q ss_pred CCceeHHHHHHHHHhc-CChHHHHHHHHHHHhC-CCCCCHhhHHHHHHHH----------HhcC-----CHhHHHH-HHH
Q 008097 145 PNDVTFSILICAYCKE-ENLVNALVLLEKSFSF-GFVPDVVTITKVLELL----------CSVG-----RVMDAVE-ILE 206 (577)
Q Consensus 145 ~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~~~----------~~~g-----~~~~a~~-~~~ 206 (577)
.|+..+.++...-... --.++-..+|+.+--. -..-+....-.+.... .+.+ ...+-.. +.+
T Consensus 170 ~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~ 249 (611)
T KOG1173|consen 170 ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAE 249 (611)
T ss_pred cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHH
Confidence 6666555443221110 0001111122110000 0000111111111100 0000 0000000 111
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC
Q 008097 207 ESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGR 286 (577)
Q Consensus 207 ~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 286 (577)
.+...-..+++.+-.++++.+.+. .+++...+..-|..+...|+..+-..+=.++.+. .|-...+|-++.--|...|+
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k 327 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGK 327 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcC
Confidence 111114566777777777777765 2345666666777888999988888888888765 35577899999999999999
Q ss_pred hHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCcee-hHHHHHHhhhcCCHHHHHHHHH
Q 008097 287 IDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVD-RSLKILGFCVDGNVEDAKRCFD 365 (577)
Q Consensus 287 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~ 365 (577)
..+|++.|.+....++.. ...|-.+...|.-.|..++|+..+..+.+..|.... +.-+..-|.+.++.+.|.+.|.
T Consensus 328 ~seARry~SKat~lD~~f---gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTF---GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred cHHHHHHHHHHhhcCccc---cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 999999999988764332 346889999999999999999999999887666544 3444556888999999999999
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 366 QMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGH--GYL---P-IASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 366 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
+.... .+-|+...+-+.-.....+.+.+|..+|+..... .+. + -..+++.|..+|.+.+.+++|+..+++.+.
T Consensus 405 ~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 405 QALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred HHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99875 3446888888888888889999999999987721 011 1 234688899999999999999999998777
Q ss_pred ccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008097 440 GIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLS 495 (577)
Q Consensus 440 ~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 495 (577)
..| +..+|..+.-.|...|+++.|.+.|.+.. .++||..+-..+|+-+.
T Consensus 484 -----l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 484 -----LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred -----cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 556 89999999999999999999999999998 78999988888888654
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=2.3e-11 Score=120.56 Aligned_cols=288 Identities=12% Similarity=0.063 Sum_probs=136.3
Q ss_pred hcCCHhHHHHHHHhccC--CCce-eHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 008097 128 KNGKVGRARSLMSDMEE--PNDV-TFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEI 204 (577)
Q Consensus 128 ~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 204 (577)
..|+++.|.+.+.+..+ |+.. .+-.....+.+.|+.+.|.+.+.+..+....+...........+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34555555555555443 2111 12222234445566666666665554332111111222234444445555444444
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHH---
Q 008097 205 LEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGL--- 281 (577)
Q Consensus 205 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~--- 281 (577)
++.+.+..+. +...+..+...|.+.|++++|.+++..+.+.+..+.......-..++
T Consensus 176 -------------------l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 176 -------------------VDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred -------------------HHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3333333221 44556666667777777777777777777665332221111111111
Q ss_pred HcCCChHHHHHHHHHHHhccC-CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceeh---HHHHHHhhhcCCH
Q 008097 282 CSGGRIDDGLKILQLMEDSKE-GSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDR---SLKILGFCVDGNV 357 (577)
Q Consensus 282 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~ 357 (577)
...+..+++.+.+..+....+ ..+.+...+..+...+...|+.++|.+.+++..+..|+.... ..........++.
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~ 315 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDN 315 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCCh
Confidence 111222222223333333211 011245556666667777777777777777776665554421 1111122233455
Q ss_pred HHHHHHHHHHHHcCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 358 EDAKRCFDQMIEEGGVPNV--VIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 358 ~~A~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
+.+.+.+++..+. .+-|+ ....++...+.+.|++++|.+.|+........||...+..+...+.+.|+.++|.++++
T Consensus 316 ~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 316 EKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555543 11222 34445555566666666666666632222234555555566666666666666666655
Q ss_pred H
Q 008097 436 E 436 (577)
Q Consensus 436 ~ 436 (577)
+
T Consensus 395 ~ 395 (409)
T TIGR00540 395 D 395 (409)
T ss_pred H
Confidence 3
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=6.2e-14 Score=131.87 Aligned_cols=191 Identities=17% Similarity=0.153 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL 318 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 318 (577)
+..++.. ...+++++|.+++....+. .++...+..++..+.+.++++++.++++.+... ...+.+...|..+...+
T Consensus 81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~ 156 (280)
T PF13429_consen 81 YERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL-PAAPDSARFWLALAEIY 156 (280)
T ss_dssp ----------------------------------------H-HHHTT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHH
T ss_pred ccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHH
Confidence 3333333 4555555555555544332 234444555555555556666655555555432 12233444455555555
Q ss_pred HhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008097 319 YRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASE 397 (577)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 397 (577)
.+.|+.++|++.+++..+..|+ ......++..+...|+.+++..++....+.. +.|...|..+..+|...|+.++|+.
T Consensus 157 ~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~ 235 (280)
T PF13429_consen 157 EQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALE 235 (280)
T ss_dssp HHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccc
Confidence 5555555555555555555553 3334445555555555555555555554431 3445556666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 398 LMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 398 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
.|++..+.. +.|..+...+..++...|+.++|.++..
T Consensus 236 ~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 236 YLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred ccccccccc-cccccccccccccccccccccccccccc
Confidence 666666532 2255555666666666666666666655
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=4.4e-12 Score=122.89 Aligned_cols=275 Identities=15% Similarity=0.072 Sum_probs=209.1
Q ss_pred hhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHcCCChHH
Q 008097 212 GRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDG--ISWNFVTYDTLIRGLCSGGRIDD 289 (577)
Q Consensus 212 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~g~~~~ 289 (577)
...-+..+|...|..+... +.-.......+..+|...+++++|.++|+.+.+.. .--+..+|++.+--+-+ . -
T Consensus 330 ~s~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~--~--v 404 (638)
T KOG1126|consen 330 LSQYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD--E--V 404 (638)
T ss_pred HHHHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh--h--H
Confidence 3445667888888886554 22233455667789999999999999999998752 11266788887754422 1 1
Q ss_pred HHHHH-HHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CceehHHHHHHhhhcCCHHHHHHHHHHH
Q 008097 290 GLKIL-QLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFP-RAVDRSLKILGFCVDGNVEDAKRCFDQM 367 (577)
Q Consensus 290 a~~~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 367 (577)
+...+ +.+.+. .+..+.+|.++.++|.-.++.+.|++.|++..++.| ...+|+.+.+-+.....+|.|...|+..
T Consensus 405 ~Ls~Laq~Li~~---~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 405 ALSYLAQDLIDT---DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred HHHHHHHHHHhh---CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 22222 222322 233678999999999999999999999999999988 5678888888999999999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCC
Q 008097 368 IEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSL 446 (577)
Q Consensus 368 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~ 446 (577)
+.. .+.+...|--+...|.+.++++.|+-.|++..+ +.| +.+....+...+-+.|+.++|+++++++.. +.
T Consensus 482 l~~-~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~-----ld 553 (638)
T KOG1126|consen 482 LGV-DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH-----LD 553 (638)
T ss_pred hcC-CchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh-----cC
Confidence 873 112344555677889999999999999999998 557 566677788888999999999999997666 56
Q ss_pred C-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcchHHHHH
Q 008097 447 P-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDY-LTWNSLLICLSQQTTWLLLL 504 (577)
Q Consensus 447 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~ 504 (577)
| |+-.--..+..+...+++++|+..++++.+ +.|+. .++..+-..|.+-|+.+++.
T Consensus 554 ~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 554 PKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred CCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHH
Confidence 6 666666677888899999999999999985 66775 55666777788888776553
No 42
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.51 E-value=5.4e-10 Score=112.12 Aligned_cols=325 Identities=15% Similarity=0.129 Sum_probs=228.1
Q ss_pred HHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 008097 125 SLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDA 201 (577)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 201 (577)
.....|++++|.+++.++.. .+...|.+|...|-..|+.+++...+-..-... +-|...|..+.....+.|.+..|
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 33444999999999988875 456789999999999999999887765543332 33567788887777778878777
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH----HHHHHH
Q 008097 202 VEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNF----VTYDTL 277 (577)
Q Consensus 202 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~l 277 (577)
.-+|..+++ .. +++...+---+..|-+.|+...|...|.++.....+.|. .+...+
T Consensus 227 ~~cy~rAI~-------------------~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~ 286 (895)
T KOG2076|consen 227 RYCYSRAIQ-------------------AN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRV 286 (895)
T ss_pred HHHHHHHHh-------------------cC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence 777655433 21 123344444566788889999999999988876322222 223344
Q ss_pred HHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh--cCC----------------
Q 008097 278 IRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK--LFP---------------- 339 (577)
Q Consensus 278 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~p---------------- 339 (577)
++.+...++-+.|.+.++..... .+...+...++.++..+.+..+++.|......... ..+
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s~-~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~ 365 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALSK-EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN 365 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhh-ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence 56677777778888888877763 23344666788888889999999988887776654 111
Q ss_pred ------CceehHH----HHHHhhhcCCHHHHHHHHHHHHHcCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008097 340 ------RAVDRSL----KILGFCVDGNVEDAKRCFDQMIEEGGV--PNVVIYDCLIHAYCQEERVREASELMKEMTGHGY 407 (577)
Q Consensus 340 ------~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 407 (577)
+..++.. ++.+..+....+....+.......... -+...|.-+..+|...|++.+|+.+|..+.....
T Consensus 366 ~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~ 445 (895)
T KOG2076|consen 366 ALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG 445 (895)
T ss_pred ccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence 1111211 122233334444444444445544433 3456788889999999999999999999997544
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 408 LPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 408 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
--+...|.-+.+.|...|..++|.+.+++.+. ..| +...-..|...+.+.|+.++|.+.+..+.
T Consensus 446 ~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~-----~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 446 YQNAFVWYKLARCYMELGEYEEAIEFYEKVLI-----LAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh-----cCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 45677898999999999999999999996665 566 56677788889999999999999999973
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.50 E-value=7.1e-11 Score=116.36 Aligned_cols=144 Identities=13% Similarity=0.034 Sum_probs=86.1
Q ss_pred ChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 008097 251 VLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEY 330 (577)
Q Consensus 251 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (577)
+.+...++++.+.+. .+.+......+...+...|+.++|.++++...+. +++. --.++.+....++.+++++.
T Consensus 244 ~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~----~~~~--~l~~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 244 GSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR----QYDE--RLVLLIPRLKTNNPEQLEKV 316 (398)
T ss_pred CHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCH--HHHHHHhhccCCChHHHHHH
Confidence 344444455444332 1335555666666666666666666666665543 1111 11223333445666666666
Q ss_pred HHHHhhcCCCcee-hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 331 LKQMEKLFPRAVD-RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 331 ~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
.+...+..|+... ...+...+.+.+++++|.+.|+...+ ..|+..++..+...+.+.|+.++|.+++++-.
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666665443 44556666677777777777777766 35777777777777777777777777777664
No 44
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=7.9e-09 Score=96.40 Aligned_cols=420 Identities=10% Similarity=0.013 Sum_probs=297.1
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHH
Q 008097 13 IFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGL 91 (577)
Q Consensus 13 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~ 91 (577)
.+..-+..=.++..+..|+.+++.....-|.-|. .|-..+-.=-.. +...|+++|++.|. ..|+...|.+.|+.-
T Consensus 109 LWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fE 184 (677)
T KOG1915|consen 109 LWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQIFERWME---WEPDEQAWLSFIKFE 184 (677)
T ss_pred HHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHH
Confidence 4445566667888999999999999764333333 344433333333 89999999996553 589999999999999
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC--CC----ceeHHHHHHHHHhcCChHH
Q 008097 92 CLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--PN----DVTFSILICAYCKEENLVN 165 (577)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~ 165 (577)
.+-+.++.|..+++..+- +.|++..|-.....-.++|.+..|+.+|+...+ .| ...+++....=.++..++.
T Consensus 185 lRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ER 262 (677)
T KOG1915|consen 185 LRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYER 262 (677)
T ss_pred HHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886 468999999999999999999999999998775 22 2334444444445667778
Q ss_pred HHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 008097 166 ALVLLEKSFSFGFVPD-VVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILIS 244 (577)
Q Consensus 166 A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 244 (577)
|.-+|+-.+..=.+-. ...|......--+.|+...-....-. .-.--++.+.+.+. .|..+|--.+.
T Consensus 263 ar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~-----------KRk~qYE~~v~~np-~nYDsWfdylr 330 (677)
T KOG1915|consen 263 ARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG-----------KRKFQYEKEVSKNP-YNYDSWFDYLR 330 (677)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh-----------hhhhHHHHHHHhCC-CCchHHHHHHH
Confidence 8777777665421111 23333333333334443332222100 00112444554433 37788888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCH--HHHHHHH----H----HHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 245 SYCETGVLDSALDVFNDMKIDGISWNF--VTYDTLI----R----GLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 245 ~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll----~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
.-...|+.+...++|++.... ++|-. ..|.-.| + .=....+++.+.++++...+. ++....|+..+
T Consensus 331 L~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l---IPHkkFtFaKi 406 (677)
T KOG1915|consen 331 LEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL---IPHKKFTFAKI 406 (677)
T ss_pred HHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---cCcccchHHHH
Confidence 888899999999999999865 45522 1122111 1 113457899999999988874 44455666554
Q ss_pred HHHH----HhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008097 315 LYGL----YRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE 390 (577)
Q Consensus 315 i~~~----~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (577)
--+| .++.++..|.+++......-|....+...|..-.+.+.++.+..++++.++-+ +-|..+|.-....-...|
T Consensus 407 WlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~Lg 485 (677)
T KOG1915|consen 407 WLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLG 485 (677)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhh
Confidence 4444 46788999999999999999999999999999999999999999999999864 347788998888888899
Q ss_pred CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHH
Q 008097 391 RVREASELMKEMTGHG-YLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALC 460 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~ 460 (577)
+.+.|..+|.-.++.. +......|.+.++-=...|.++.|..++++.+. ..+...+|..+..--.
T Consensus 486 dtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~-----rt~h~kvWisFA~fe~ 551 (677)
T KOG1915|consen 486 DTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD-----RTQHVKVWISFAKFEA 551 (677)
T ss_pred hHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH-----hcccchHHHhHHHHhc
Confidence 9999999999998643 222344577777777889999999999995555 3455557776665444
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=9.6e-14 Score=130.61 Aligned_cols=228 Identities=20% Similarity=0.196 Sum_probs=92.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
|...|..+.......++++.|...++++...+.. +...+..++.. ...+++++|.+++....+. .++...+..+
T Consensus 43 ~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~----~~~~~~l~~~ 116 (280)
T PF13429_consen 43 DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER----DGDPRYLLSA 116 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc----ccccchhhHH
Confidence 4445555555666677888888888888765422 44556566655 5777888888777665443 1245556677
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcC---CCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcC
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLF---PRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVP-NVVIYDCLIHAYCQEE 390 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 390 (577)
+..+.+.++++++.++++.+.... ++...|..+...+.+.|+.++|.+.|++..+. .| |....+.++..+...|
T Consensus 117 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~ 194 (280)
T PF13429_consen 117 LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMG 194 (280)
T ss_dssp -H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTC
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCC
Confidence 777778888888888887766432 34445566666777888888888888888775 34 4667777777777788
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHH
Q 008097 391 RVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSAS 469 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 469 (577)
+.+++.+++....+.. +.|...+..+..++...|+.++|..+|++... ..| |+.....+.+++...|+.++|.
T Consensus 195 ~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~-----~~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 195 DYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK-----LNPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH-----HSTT-HHHHHHHHHHHT---------
T ss_pred ChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc-----cccccccccccccccccccccccccc
Confidence 8887777777776542 34555667777777888888888888875444 345 6777777888888888888888
Q ss_pred HHHHHHH
Q 008097 470 MLLVQMV 476 (577)
Q Consensus 470 ~~~~~m~ 476 (577)
++.++..
T Consensus 269 ~~~~~~~ 275 (280)
T PF13429_consen 269 RLRRQAL 275 (280)
T ss_dssp -------
T ss_pred ccccccc
Confidence 7777654
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5.8e-10 Score=103.57 Aligned_cols=123 Identities=11% Similarity=0.048 Sum_probs=57.9
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 008097 347 KILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQG 425 (577)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g 425 (577)
+..-|+-.++.++|...|++..+.+ +.....|+.|..-|...++...|++-++..++ +.| |...|-.+..+|.-.+
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhc
Confidence 3334444444555555555554431 11234455555555555555555555555544 223 4444555555555555
Q ss_pred CHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 426 NVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 426 ~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
...-|+-+|+++.. ++| |+..|..|.++|.+.++.++|.+.+++...
T Consensus 413 Mh~YaLyYfqkA~~-----~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 413 MHFYALYYFQKALE-----LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred chHHHHHHHHHHHh-----cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 55555555553333 444 444555555555555555555555555443
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.47 E-value=2.1e-10 Score=113.72 Aligned_cols=300 Identities=10% Similarity=-0.048 Sum_probs=208.7
Q ss_pred HHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 008097 190 ELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNV-DTYNILISSYCETGVLDSALDVFNDMKIDGIS 268 (577)
Q Consensus 190 ~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 268 (577)
..+....+..++.+.+.+..-....|+++.|.+.+....+.. |+. ..+-....++.+.|+++.|...+.+..+. .
T Consensus 73 ~~~~~~r~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~ 148 (409)
T TIGR00540 73 RGWFSGRKRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--A 148 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 344444455566666655555577788888888887776653 332 33444456777889999999999998765 3
Q ss_pred cCH--HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCceehH
Q 008097 269 WNF--VTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLF-PRAVDRS 345 (577)
Q Consensus 269 ~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 345 (577)
|+. .........+...|+++.|.+.++.+.+..|. +...+..+...+.+.|++++|.+.+....+.. ++...+.
T Consensus 149 p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~---~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~ 225 (409)
T TIGR00540 149 GNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR---HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFA 225 (409)
T ss_pred CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 443 23444577788899999999999999987433 66678899999999999999999999998763 2222221
Q ss_pred H-HHH---HhhhcCCHHHHHHHHHHHHHcCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---H
Q 008097 346 L-KIL---GFCVDGNVEDAKRCFDQMIEEGG---VPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTF---N 415 (577)
Q Consensus 346 ~-l~~---~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~ 415 (577)
. ... .....+..+.+...+..+..... +.+...+..+...+...|+.++|.+++++..+. .||.... .
T Consensus 226 ~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 226 DLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 1 111 11222333333345555554311 137888999999999999999999999999974 3554421 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-Cc--ccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008097 416 TVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GS--GHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLI 492 (577)
Q Consensus 416 ~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 492 (577)
.........++.+.+.+.+++.++ ..| |+ ....++...+.+.|++++|.+.|+........||...+..+..
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk-----~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ 378 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAK-----NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAAD 378 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHH-----hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHH
Confidence 122223445788889999986565 355 44 5677899999999999999999995333346799988888888
Q ss_pred HHHhcchHHHH
Q 008097 493 CLSQQTTWLLL 503 (577)
Q Consensus 493 ~~~~~~~~~~~ 503 (577)
.+.+.|+.+.+
T Consensus 379 ll~~~g~~~~A 389 (409)
T TIGR00540 379 AFDQAGDKAEA 389 (409)
T ss_pred HHHHcCCHHHH
Confidence 88888876543
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=9.5e-12 Score=120.60 Aligned_cols=192 Identities=14% Similarity=0.036 Sum_probs=83.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISW-NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+.+|-++...|.-.++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+.....++. +-..|.-+
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r---hYnAwYGl 495 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR---HYNAWYGL 495 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch---hhHHHHhh
Confidence 444555555555555555555555554433 22 3344444444444444555555555544433110 12223333
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVR 393 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (577)
...|.+.++++.|+-.|+++.++.|.. +....+...+-+.|+.++|+++|++...... .|+..---.+..+...++++
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRASILFSLGRYV 574 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHHHHHHhhcchH
Confidence 444455555555555555554444432 2223333344444445555555554444321 12222222333334444444
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 008097 394 EASELMKEMTGHGYLPIAS-TFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 394 ~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
+|+..++++++ +.|+.. .|..+...|.+.|..+.|+.-|.
T Consensus 575 eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 575 EALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred HHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 55555544444 233322 24444444444444444444444
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=3.1e-10 Score=100.63 Aligned_cols=284 Identities=17% Similarity=0.165 Sum_probs=159.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChh--
Q 008097 160 EENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVD-- 237 (577)
Q Consensus 160 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-- 237 (577)
+++.++|.++|-+|.+.. +-+..+-.+|.+.|.+.|..+.|..+|..+... ||..
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s----------------------pdlT~~ 104 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES----------------------PDLTFE 104 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC----------------------CCCchH
Confidence 456677777777776532 223344556667777777777777776554332 2211
Q ss_pred ----hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCc----c
Q 008097 238 ----TYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRI----S 309 (577)
Q Consensus 238 ----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~ 309 (577)
..-.|..-|...|-+|.|..+|..+.+.| ..-......|+..|-...++++|+++-+++.+. +..+.. .
T Consensus 105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~--~~q~~~~eIAq 181 (389)
T COG2956 105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKL--GGQTYRVEIAQ 181 (389)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc--CCccchhHHHH
Confidence 22334556778888899999998888654 223455667888888888889988888877766 211111 1
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHH-HHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 008097 310 PYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSL-KILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ 388 (577)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 388 (577)
.|.-+...+....+.+.|..++.+..+..|+.+--+. +...+...|+++.|.+.++.+.+.+..--..+...+..+|.+
T Consensus 182 fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 182 FYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ 261 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 1334444445556666677777766666555544433 334555666666666666666665332223455566666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHH---cCCh
Q 008097 389 EERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCE---KGGF 465 (577)
Q Consensus 389 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~---~g~~ 465 (577)
.|+.++.+..+.++.+..-.++. -..+...-....-.+.|..++.+.++ -.|+...+..+++.-.. -|+.
T Consensus 262 lg~~~~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~-----r~Pt~~gf~rl~~~~l~daeeg~~ 334 (389)
T COG2956 262 LGKPAEGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTRQLR-----RKPTMRGFHRLMDYHLADAEEGRA 334 (389)
T ss_pred hCCHHHHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHh-----hCCcHHHHHHHHHhhhccccccch
Confidence 66666666666666654322222 22222222222223344444333444 35666555555554332 2334
Q ss_pred hHHHHHHHHHH
Q 008097 466 QSASMLLVQMV 476 (577)
Q Consensus 466 ~~A~~~~~~m~ 476 (577)
++-+.+++.|.
T Consensus 335 k~sL~~lr~mv 345 (389)
T COG2956 335 KESLDLLRDMV 345 (389)
T ss_pred hhhHHHHHHHH
Confidence 55555555554
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.45 E-value=1.7e-09 Score=108.17 Aligned_cols=478 Identities=13% Similarity=0.062 Sum_probs=257.6
Q ss_pred CCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHh
Q 008097 4 SIQSPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDY 82 (577)
Q Consensus 4 ~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~ 82 (577)
..|+.|+..+|.++|.-|+..|+.+.|- +|..|.-....-+...++.++.+.... +.+.+. .|-+.
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~aD 84 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------EPLAD 84 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------CCchh
Confidence 5689999999999999999999999988 999987665666778888888887665 443332 57788
Q ss_pred hHHHHHHHHHhcCCHhH---HHHHHHHHH----hCCCCC-Ccc-------------hHHHHHHHHHhcCCHhHHHHHHHh
Q 008097 83 TYAILMKGLCLTNRVGD---GFKLLHVMK----SRGVKP-NSV-------------IYNTLIHSLCKNGKVGRARSLMSD 141 (577)
Q Consensus 83 ~~~~ll~~~~~~~~~~~---a~~~~~~~~----~~g~~~-~~~-------------~~~~li~~~~~~g~~~~A~~~~~~ 141 (577)
||..|+.+|.+.||+.. .++.+..+. ..|+.. ... --...+....-.|-++.+++++..
T Consensus 85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998765 222222221 122211 011 112344445556677777777776
Q ss_pred ccC--CCceeHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh-------
Q 008097 142 MEE--PNDVTFSILICAYCKEEN-LVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ------- 211 (577)
Q Consensus 142 ~~~--~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------- 211 (577)
++- .+. +.-..++-+..... +++-....+.... .|++.+|..++..-...|+.+.|..++..|.+.
T Consensus 165 ~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 165 VPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred CCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 663 111 11112433333222 2333333333322 578888888888888888888888888777766
Q ss_pred ------hhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHH-----------HHHHHHH----------
Q 008097 212 ------GRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALD-----------VFNDMKI---------- 264 (577)
Q Consensus 212 ------~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~-----------~~~~m~~---------- 264 (577)
...++...+..+.+-|.+.|+.|+..|+..-+..+..+|....+.. ++..|..
T Consensus 241 yFwpLl~g~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~ 320 (1088)
T KOG4318|consen 241 YFWPLLLGINAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQ 320 (1088)
T ss_pred cchhhhhcCccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHH
Confidence 3456666777778888888888888888777666666544221111 1111110
Q ss_pred ---------------CCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC-CcccHHHHHHHHHhcCCHHHHH
Q 008097 265 ---------------DGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG-RISPYNSVLYGLYRENQQDEAL 328 (577)
Q Consensus 265 ---------------~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 328 (577)
.|+.....+|...+. ....|.-++..++...+........+ ++..+..++.-|.+.-+..-..
T Consensus 321 nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~ 399 (1088)
T KOG4318|consen 321 NLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICS 399 (1088)
T ss_pred HHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHH
Confidence 011111111211111 11134444444444443322111111 1122323232222211110000
Q ss_pred HHHH--HHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCC-----------CCHhhHHHHHHHHHhcCCHHHH
Q 008097 329 EYLK--QMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGV-----------PNVVIYDCLIHAYCQEERVREA 395 (577)
Q Consensus 329 ~~~~--~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------p~~~~~~~li~~~~~~g~~~~A 395 (577)
.++. +..+...+... ...+.-+...-....+.+-+......... +-...-+.++..++..-+..++
T Consensus 400 ~i~~~~qgls~~l~se~-tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~ 478 (1088)
T KOG4318|consen 400 RIYYAGQGLSLNLNSED-TPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKI 478 (1088)
T ss_pred HHHHHHHHHHhhhchhh-hHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00000000000 00011111111111122222211111000 1112234555556555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHH
Q 008097 396 SELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQM 475 (577)
Q Consensus 396 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 475 (577)
+..-++.... .-| -.|..++.-|.+....+.|..+.+ .....+..+.-+..-+..+.+.+.|.+...++..+++++
T Consensus 479 l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~-e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ 554 (1088)
T KOG4318|consen 479 LCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVD-EIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYED 554 (1088)
T ss_pred HHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchh-hhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhh
Confidence 5444433322 112 368889999999999999999998 555334445557777899999999999999999999999
Q ss_pred HHCCC-CCC-HHHHHHHHHHHHhcchHHHHH
Q 008097 476 VGKGI-LPD-YLTWNSLLICLSQQTTWLLLL 504 (577)
Q Consensus 476 ~~~~~-~p~-~~~~~~ll~~~~~~~~~~~~~ 504 (577)
.+.-. +|. ..+.--++++....|..+..+
T Consensus 555 ks~a~n~~~~a~~~f~~lns~a~agqqe~Lk 585 (1088)
T KOG4318|consen 555 KSSAENEPLVAIILFPLLNSGAPAGQQEKLK 585 (1088)
T ss_pred hHHhhCCchHHHHHHHHHhhhhhccCHHHHH
Confidence 86422 233 344555667767777665443
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=6.1e-10 Score=98.79 Aligned_cols=298 Identities=14% Similarity=0.176 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcc------hHH
Q 008097 47 KIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSV------IYN 120 (577)
Q Consensus 47 ~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~------~~~ 120 (577)
..|-.-++.+..++.++|.++|- +|.+.. +-+..+--+|-+.|.+.|..+.|+++|+.+.++ ||.. ..-
T Consensus 37 r~Yv~GlNfLLs~Q~dKAvdlF~-e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~ 111 (389)
T COG2956 37 RDYVKGLNFLLSNQPDKAVDLFL-EMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQ 111 (389)
T ss_pred HHHHhHHHHHhhcCcchHHHHHH-HHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHH
Confidence 44666667777779999999999 776632 123344556778888999999999999999885 4432 334
Q ss_pred HHHHHHHhcCCHhHHHHHHHhccCCCc---eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 008097 121 TLIHSLCKNGKVGRARSLMSDMEEPND---VTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGR 197 (577)
Q Consensus 121 ~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 197 (577)
.|..-|...|-+|+|+.+|..+.+... .....|+..|-...+|++|++.-+++.+.+..+..+- +...||..-+
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e---IAqfyCELAq 188 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE---IAQFYCELAQ 188 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH---HHHHHHHHHH
Confidence 566778999999999999999887333 3566788999999999999999998887665443211 1222322111
Q ss_pred HhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHH
Q 008097 198 VMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTL 277 (577)
Q Consensus 198 ~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 277 (577)
-. ....+.+.|..++....+.+.+ .+..--.+-+.+...|+++.|.+.++...+.+..--..+...|
T Consensus 189 ~~------------~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 189 QA------------LASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred HH------------hhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 00 1112233333334444433221 2333334445566666666666666666655333334455556
Q ss_pred HHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCH
Q 008097 278 IRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNV 357 (577)
Q Consensus 278 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 357 (577)
..+|.+.|+.++....+..+.+. .+....-..+-.--....-.
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~-------------------------------------~~g~~~~l~l~~lie~~~G~ 298 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMET-------------------------------------NTGADAELMLADLIELQEGI 298 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHc-------------------------------------cCCccHHHHHHHHHHHhhCh
Confidence 66666666666666666655554 22222222222211122223
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHh
Q 008097 358 EDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ---EERVREASELMKEMTG 404 (577)
Q Consensus 358 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 404 (577)
+.|.....+-... +|+...+..+|+.-.. .|...+.+.+++.|..
T Consensus 299 ~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 299 DAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3444333333332 4777777777765543 3456677777777764
No 52
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=3.5e-08 Score=94.85 Aligned_cols=458 Identities=14% Similarity=0.074 Sum_probs=261.8
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHH
Q 008097 12 SIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKG 90 (577)
Q Consensus 12 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~ 90 (577)
..+.+=++.+...|++++|.+....++..++. +...+..=+-++.+. .|++|+.+.+. ..+...+.+-+ +=++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~~~--fEKA 86 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINSFF--FEKA 86 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcchhh--HHHH
Confidence 45566678889999999999999999987643 445555556667777 99999976651 11111111111 3456
Q ss_pred HH--hcCCHhHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHH
Q 008097 91 LC--LTNRVGDGFKLLHVMKSRGVKPN-SVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNAL 167 (577)
Q Consensus 91 ~~--~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 167 (577)
|| +.+..++|...+. |..++ ..+...-...+.+.|++++|..+|+.+.+.+...+...+.+-+..--.....
T Consensus 87 Yc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~ 161 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV 161 (652)
T ss_pred HHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH
Confidence 65 8999999999988 33333 3366666777889999999999999998776666655554322111111111
Q ss_pred HHHHHHHhCCCCCCHhhHHHHH---HHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChh-hHHHHH
Q 008097 168 VLLEKSFSFGFVPDVVTITKVL---ELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVD-TYNILI 243 (577)
Q Consensus 168 ~~~~~m~~~g~~~~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~li 243 (577)
+ .+......| ..+|..+. -.+...|++..|+++++.+.+.++..-.++... =+++.. ... .-.-|.
T Consensus 162 ~---~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~-eEeie~-----el~~IrvQla 231 (652)
T KOG2376|consen 162 Q---LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN-EEEIEE-----ELNPIRVQLA 231 (652)
T ss_pred H---HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc-hhhHHH-----HHHHHHHHHH
Confidence 1 222233333 33454444 345678999999999888755422211111111 001111 111 112344
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHHH----HHHHHHHHHcCCChH-HHHHHHHHHHhccC---------CCCCCcc
Q 008097 244 SSYCETGVLDSALDVFNDMKIDGISWNFVT----YDTLIRGLCSGGRID-DGLKILQLMEDSKE---------GSKGRIS 309 (577)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~----~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~---------~~~~~~~ 309 (577)
-.+-..|+.++|..++...++.. ++|... -|.++..-....-++ .+...++....... .......
T Consensus 232 yVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~ 310 (652)
T KOG2376|consen 232 YVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY 310 (652)
T ss_pred HHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45667899999999999998775 344422 222332211111111 11122221111000 0000111
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhh-hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 008097 310 PYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFC-VDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ 388 (577)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 388 (577)
.-+.++..| .+..+.+.++........|....-..+..++- +......+..++....+........+.-.++.....
T Consensus 311 ~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 311 RNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 112233332 34445555555555444454443333333332 223467777777777665333335566777788889
Q ss_pred cCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-------HHHHHhhcccCCCCCCCcccHH
Q 008097 389 EERVREASELMK--------EMTGHGYLPIASTFNTVLSGLCRQGNVGTAL-------KLVEEDMRGIGRGSLPGSGHYS 453 (577)
Q Consensus 389 ~g~~~~A~~~~~--------~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~-------~~~~~~m~~~~~~~~p~~~~~~ 453 (577)
.|+++.|++++. ...+.+..|.. ...+...+.+.++.+.|. .+|...+. . -.--..++.
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t--~--s~~l~~~~~ 462 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQT--G--SIALLSLMR 462 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcc--c--chHHHhHHH
Confidence 999999999999 66666656654 445566667766654444 44443333 1 111223344
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchH
Q 008097 454 PLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTW 500 (577)
Q Consensus 454 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 500 (577)
-++..-.+.|+-++|..+++++.+. ..+|..+...++.++++-.-.
T Consensus 463 ~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d~e 508 (652)
T KOG2376|consen 463 EAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARLDPE 508 (652)
T ss_pred HHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcCHH
Confidence 4455556789999999999999864 467788999999999876543
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1e-08 Score=96.19 Aligned_cols=406 Identities=15% Similarity=0.146 Sum_probs=246.6
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCC-HhhHHHHHHH
Q 008097 14 FITVIRGLGRARMINDVVKATDLVSRFNMTPS-LKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGD-DYTYAILMKG 90 (577)
Q Consensus 14 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~-~~~~~~ll~~ 90 (577)
+-...+-|.+.|++++|++.+.+.++. .|+ .+-|...-.+|..- +++++.+.-. ...+ +.|+ +-.+..-.++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~T-kALE--l~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCT-KALE--LNPDYVKALLRRASA 192 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHH-HHhh--cCcHHHHHHHHHHHH
Confidence 345667788999999999999999884 566 56677777777777 8988887665 2322 4555 3334444556
Q ss_pred HHhcCCHhHHHHHHHHHHh-CCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhc---------
Q 008097 91 LCLTNRVGDGFKLLHVMKS-RGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKE--------- 160 (577)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--------- 160 (577)
+-..|++++|+.=..-..- .|+. |..+--.+=+.+-+.| ...+.+-|..=..|...+ ++.|..|...
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS-~~fi~syf~sF~~~~~~~~ 269 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPS-ATFIASYFGSFHADPKPLF 269 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCc-HHHHHHHHhhccccccccc
Confidence 6677777776542221111 1221 1111111111111111 122222332111122111 1222222111
Q ss_pred ---CC-----hHHHHHHHHHHHhCCCCC-----CHhhHHHHHHHHHhcCCHhHHHHHHHHHHH-----hhhcCChhHHHH
Q 008097 161 ---EN-----LVNALVLLEKSFSFGFVP-----DVVTITKVLELLCSVGRVMDAVEILEESGE-----QGRLGKVKGGCR 222 (577)
Q Consensus 161 ---~~-----~~~A~~~~~~m~~~g~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~g~~~~a~~ 222 (577)
++ ..++++.+..-...|... +..++......+.+ ..+.-.+..-..+. ..-+|+...|..
T Consensus 270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n--~~d~~le~~A~al~~~gtF~fL~g~~~~a~~ 347 (606)
T KOG0547|consen 270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVN--EIDAELEYMAEALLLRGTFHFLKGDSLGAQE 347 (606)
T ss_pred cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhcccc--ccchhHHHHHHHHHHhhhhhhhcCCchhhhh
Confidence 00 112222221111111000 00111111111111 11111111111111 145678888888
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Q 008097 223 FLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE 302 (577)
Q Consensus 223 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 302 (577)
-|+........++ ..|--+..+|....+.++....|....+.. +-|+.+|..-.+++.-.+++++|..-|++....++
T Consensus 348 d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 348 DFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP 425 (606)
T ss_pred hHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 8888887644432 237778889999999999999999998765 33666777777777778999999999999988743
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC------
Q 008097 303 GSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN------ 375 (577)
Q Consensus 303 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------ 375 (577)
. ++..|-.+.-+..+.+++++++..|++..+..|+. ..|+.....+...++++.|.+.|+..++. .|+
T Consensus 426 e---~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v 500 (606)
T KOG0547|consen 426 E---NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIV 500 (606)
T ss_pred h---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccc
Confidence 3 66777777778888999999999999999988875 56788888999999999999999999885 333
Q ss_pred -Hh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 376 -VV--IYDCLIHAYCQEERVREASELMKEMTGHGYLPI-ASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 376 -~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
+. .--.++..- -.+++..|++++++..+ +.|- ...+.+|...-...|+.++|+++|++...
T Consensus 501 ~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 501 NAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 111222111 23889999999999998 4463 45688899999999999999999996554
No 54
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=3.5e-08 Score=88.75 Aligned_cols=182 Identities=9% Similarity=0.011 Sum_probs=87.1
Q ss_pred HHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-hc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcC
Q 008097 18 IRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLV-KE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTN 95 (577)
Q Consensus 18 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 95 (577)
+.-+....++..|+.+++.-...+-. .....+..|..|. +. ++++|+..|. .+... -.|+...+..|.-+..-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~-~~~~~-~~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYT-FLMNK-DDAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHH-HHhcc-CCCCcccchhHHHHHHHHH
Confidence 34445567888888887776543321 2223444444433 33 8888888887 33332 2455555555555555677
Q ss_pred CHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHh
Q 008097 96 RVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFS 175 (577)
Q Consensus 96 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 175 (577)
.+.+|.++-....+ ++-.-..|++.-.+.++-++-..+-+.+.... .---+|.+.....-.+++|+++|++.+.
T Consensus 106 ~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777776555432 22222333344445555444444433333211 1111222222233345566666655543
Q ss_pred CCCCCCHhhHHHHH-HHHHhcCCHhHHHHHHHHHHH
Q 008097 176 FGFVPDVVTITKVL-ELLCSVGRVMDAVEILEESGE 210 (577)
Q Consensus 176 ~g~~~~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~ 210 (577)
. .|+-...+.-+ -+|.+..-++-+.++++..++
T Consensus 180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 3 22323333222 233444444444444444333
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=1.6e-12 Score=85.64 Aligned_cols=50 Identities=42% Similarity=0.842 Sum_probs=46.6
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008097 374 PNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCR 423 (577)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 423 (577)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.37 E-value=5.2e-09 Score=95.92 Aligned_cols=280 Identities=14% Similarity=0.049 Sum_probs=139.9
Q ss_pred CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHH
Q 008097 60 DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLM 139 (577)
Q Consensus 60 ~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 139 (577)
++.+|.++.. .-.+.+-.| ...|..-..+.-+.|+.+.+-..+.+.-+.--.++..+.-+........|+++.|+.-.
T Consensus 99 ~~~qAEkl~~-rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 99 DFQQAEKLLR-RNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cHHHHHHHHH-HhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 6677766666 444444332 23344444455566777777777776666533445555666666666667777666665
Q ss_pred HhccC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008097 140 SDMEE---PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDV-------VTITKVLELLCSVGRVMDAVEILEESG 209 (577)
Q Consensus 140 ~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~ 209 (577)
+++.+ .+.........+|.+.|++.+...++.+|.+.|.--|+ .+|..++.-....+..+.-...
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~----- 251 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW----- 251 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH-----
Confidence 55442 45556666667777777777777777777666654332 1233333322222222221111
Q ss_pred HhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHH
Q 008097 210 EQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDD 289 (577)
Q Consensus 210 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 289 (577)
++..... .+-++..-.+++.-+.++|+.++|.++..+..+.+..|+ ... .-.+.+.++...
T Consensus 252 --------------W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~ 312 (400)
T COG3071 252 --------------WKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEP 312 (400)
T ss_pred --------------HHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchH
Confidence 1111111 111333444455555556666666666655555544433 111 112334444444
Q ss_pred HHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHH
Q 008097 290 GLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMI 368 (577)
Q Consensus 290 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 368 (577)
-.+..+.-.+.. +.++..+.+|...|.+++.+.+|.+.|+...+..|+..+|..+.++|.+.|+..+|.+++++..
T Consensus 313 l~k~~e~~l~~h---~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 313 LIKAAEKWLKQH---PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHhC---CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 444444433321 1133445555555555555555555555555544444444444444444444444444444443
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.35 E-value=1.8e-07 Score=90.80 Aligned_cols=333 Identities=13% Similarity=0.065 Sum_probs=197.7
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh----hhcCChhHHHHHH
Q 008097 149 TFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ----GRLGKVKGGCRFL 224 (577)
Q Consensus 149 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~g~~~~a~~~~ 224 (577)
.|++|...|.+.|.+++|..+|++.... ..+..-|+.+.++|+.-.....+..+- ..... ...-+++-...-|
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhhhHHHHHHHH
Confidence 5777777788888888888887776543 234445556666665432222221111 00000 0111233333445
Q ss_pred HHHHHcCC-----------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC------HHHHHHHHHHHHcCCCh
Q 008097 225 KEMERKGC-----------LPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWN------FVTYDTLIRGLCSGGRI 287 (577)
Q Consensus 225 ~~~~~~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~ll~~~~~~g~~ 287 (577)
+.+...+. +-++..|..-+. ...|+..+-...|.+..+. +.|- ...|..+.+.|-..|++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 54444321 113444444333 2346677778888887754 2222 24578889999999999
Q ss_pred HHHHHHHHHHHhccCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-------------------ceehHHH
Q 008097 288 DDGLKILQLMEDSKEGSKGR-ISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-------------------AVDRSLK 347 (577)
Q Consensus 288 ~~a~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-------------------~~~~~~l 347 (577)
+.|+.+|++......+...+ ..+|..-..+=.++.+++.|+++.+.....+.. ...|+..
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 99999999987652111101 234555666667788899999988887643211 2234555
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHH---h
Q 008097 348 ILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAS-TFNTVLSGLC---R 423 (577)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~---~ 423 (577)
++---..|-++....+++++++..+. ++..--....-+-.+.-++++.+++++-+..=--|+.. .|+..+.-+. .
T Consensus 484 ~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 55556778999999999999987543 22222222233445677889999888766542235543 4666555443 2
Q ss_pred cCCHHHHHHHHHHhhcccCCCCCCCc--ccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHH
Q 008097 424 QGNVGTALKLVEEDMRGIGRGSLPGS--GHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDY--LTWNSLLIC 493 (577)
Q Consensus 424 ~g~~~~a~~~~~~~m~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~ 493 (577)
....+.|..+|++.+. +++|.. ..|-.....--+.|....|.+++++.... +++.. ..||..|.-
T Consensus 563 g~klEraRdLFEqaL~----~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~k 631 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD----GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKK 631 (835)
T ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHH
Confidence 3468999999996555 466522 22344444445678889999999997653 55543 557776654
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=1.6e-08 Score=92.81 Aligned_cols=288 Identities=12% Similarity=0.092 Sum_probs=155.8
Q ss_pred cCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 008097 129 NGKVGRARSLMSDMEE---PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEIL 205 (577)
Q Consensus 129 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 205 (577)
.|++.+|+++..+-.+ .....|..-..+--+.|+.+.+-.++.+..+....++...+.+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~- 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN- 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH-
Confidence 3666666666655443 112223333344445556666666665554432233333344444444444444444332
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC
Q 008097 206 EESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGG 285 (577)
Q Consensus 206 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 285 (577)
..++.+.+.. +.........+|.+.|++.....+...|.+.|.-.|...-.
T Consensus 176 ------------------v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~---------- 226 (400)
T COG3071 176 ------------------VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR---------- 226 (400)
T ss_pred ------------------HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------
Confidence 2333333222 34445555555555566655555555555554333321100
Q ss_pred ChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh-cCCCceehHHHHHHhhhcCCHHHHHHHH
Q 008097 286 RIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK-LFPRAVDRSLKILGFCVDGNVEDAKRCF 364 (577)
Q Consensus 286 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 364 (577)
+ ...+|..+++-....+..+.-...++.... ...++..-..++.-+..+|+.++|.++.
T Consensus 227 -----------l---------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i 286 (400)
T COG3071 227 -----------L---------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEII 286 (400)
T ss_pred -----------H---------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHH
Confidence 0 001233333333333333333333433332 2223333445555566777777777777
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCC
Q 008097 365 DQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG-HGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGR 443 (577)
Q Consensus 365 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~ 443 (577)
.+..+++..|+ -...-.+.+-++...-++..++..+ .+. ++-.+.++...|.+.+.+.+|..+|+..+.
T Consensus 287 ~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~---- 356 (400)
T COG3071 287 EDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALK---- 356 (400)
T ss_pred HHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh----
Confidence 77777655554 1222334566677777776666653 333 335677788888888888888888885555
Q ss_pred CCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 444 GSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 444 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
..|+..+|+-+.+++.+.|+.++|.+..++...
T Consensus 357 -~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 357 -LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred -cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 678888888888888888888888888877653
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=4.5e-12 Score=83.48 Aligned_cols=50 Identities=50% Similarity=0.906 Sum_probs=48.1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc
Q 008097 234 PNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCS 283 (577)
Q Consensus 234 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 283 (577)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999875
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.30 E-value=9.4e-07 Score=86.04 Aligned_cols=470 Identities=13% Similarity=0.121 Sum_probs=251.8
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHH
Q 008097 15 ITVIRGLGRARMINDVVKATDLVSRFN-MTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLC 92 (577)
Q Consensus 15 ~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~ 92 (577)
-.-+..+.++|++..-+..|+..+..- +.-....|...+...... -++-+..+|+ ...+ + ++..-+-.|..++
T Consensus 106 l~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyr-RYLk--~--~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 106 LDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYR-RYLK--V--APEAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHH-HHHh--c--CHHHHHHHHHHHH
Confidence 333444556677777777777765421 111233455555555555 5556666666 2222 1 2222334445555
Q ss_pred hcCCHhHHHHHHHHHHh----------------------------------------CCC--CCC--cchHHHHHHHHHh
Q 008097 93 LTNRVGDGFKLLHVMKS----------------------------------------RGV--KPN--SVIYNTLIHSLCK 128 (577)
Q Consensus 93 ~~~~~~~a~~~~~~~~~----------------------------------------~g~--~~~--~~~~~~li~~~~~ 128 (577)
..+++++|.+.+..++. .|+ -+| -..|.+|.+-|.+
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHH
Confidence 55555555544444321 111 111 2357999999999
Q ss_pred cCCHhHHHHHHHhccC--CCceeHHHHHHHHHhcCCh----------------------HHHHHHHHHHHhCCC------
Q 008097 129 NGKVGRARSLMSDMEE--PNDVTFSILICAYCKEENL----------------------VNALVLLEKSFSFGF------ 178 (577)
Q Consensus 129 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~----------------------~~A~~~~~~m~~~g~------ 178 (577)
.|.+++|..+|++... -.+.-|+.+..+|+.-... +-.+..|+.+...+.
T Consensus 261 ~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsV 340 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSV 340 (835)
T ss_pred hhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 9999999999998765 3455577777777653221 122223333332210
Q ss_pred -----CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh---------------------hhcCChhHHHHHHHHHHHcCC
Q 008097 179 -----VPDVVTITKVLELLCSVGRVMDAVEILEESGEQ---------------------GRLGKVKGGCRFLKEMERKGC 232 (577)
Q Consensus 179 -----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------------~~~g~~~~a~~~~~~~~~~~~ 232 (577)
+-++.+|..-+..+ .|+..+-...+.++++. ...|+++.|+.+|++...-..
T Consensus 341 lLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 11122222222211 23344444455554444 456677777777776655422
Q ss_pred CCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----------c------CHHHHHHHHHHHHcCCChHHHHH
Q 008097 233 LPN---VDTYNILISSYCETGVLDSALDVFNDMKIDGIS-----------W------NFVTYDTLIRGLCSGGRIDDGLK 292 (577)
Q Consensus 233 ~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----------~------~~~~~~~ll~~~~~~g~~~~a~~ 292 (577)
+-- ..+|-.-...=.+..+++.|+++.+......-. + +...|+..++.--..|-++....
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 110 123333333334555666777766655431101 1 12334444555555677777777
Q ss_pred HHHHHHhccCCCCCCcccHHHHH---HHHHhcCCHHHHHHHHHHHhhcCCCce---ehHHHHHHhhh---cCCHHHHHHH
Q 008097 293 ILQLMEDSKEGSKGRISPYNSVL---YGLYRENQQDEALEYLKQMEKLFPRAV---DRSLKILGFCV---DGNVEDAKRC 363 (577)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~l~~~~~~---~g~~~~A~~~ 363 (577)
+++.+.+.. +.|-..++ .-+-.+.-++++.+++++-..+.+-+. .|++.+.-+.+ ..+++.|..+
T Consensus 499 vYdriidLr------iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 499 VYDRIIDLR------IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHh------cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 777777651 11211111 123345556777777777666543222 34554443332 2467888888
Q ss_pred HHHHHHcCCCCCHhhHHHH--HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 364 FDQMIEEGGVPNVVIYDCL--IHAYCQEERVREASELMKEMTGHGYLPIAS--TFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 364 ~~~~~~~~~~p~~~~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
|++.++ |.+|...-+--+ ...--..|....|+.++++... ++++... .|+..|.--...=-+.....+|++.+.
T Consensus 573 FEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 573 FEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE 650 (835)
T ss_pred HHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 888887 555543222111 1222346778888888888654 3555432 466655433322223444566665555
Q ss_pred ccCCCCCCCccc---HHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcchHHHHHH
Q 008097 440 GIGRGSLPGSGH---YSPLIKALCEKGGFQSASMLLVQMVGKGILP--DYLTWNSLLICLSQQTTWLLLLL 505 (577)
Q Consensus 440 ~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~~~~ 505 (577)
+-|+... .--..+.-++.|..+.|..++.--.+- ..| +...|.+.=.--.+|||.+....
T Consensus 651 -----~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 651 -----SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred -----hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 3554332 334556677889999999998776532 334 45669988888899999876543
No 61
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.30 E-value=6.7e-09 Score=104.01 Aligned_cols=330 Identities=15% Similarity=0.145 Sum_probs=179.5
Q ss_pred HHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeH
Q 008097 71 KMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTF 150 (577)
Q Consensus 71 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 150 (577)
.+...|+.|+.+||.++|..|+..|+++.|- +|..|.-...+.+..+++.++......++.+.+. +|...+|
T Consensus 15 ~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDty 86 (1088)
T KOG4318|consen 15 LHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTY 86 (1088)
T ss_pred HHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHH
Confidence 4455566666666666666666666666665 6666655555555556666666655555555443 4555566
Q ss_pred HHHHHHHHhcCChHH---HHHHHHHHH----hCC-----------------CCCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 008097 151 SILICAYCKEENLVN---ALVLLEKSF----SFG-----------------FVPDVVTITKVLELLCSVGRVMDAVEILE 206 (577)
Q Consensus 151 ~~li~~~~~~~~~~~---A~~~~~~m~----~~g-----------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 206 (577)
+.|..+|...|+... +.+.+.... ..| .-||..+ ++....-.|.++.+.+++.
T Consensus 87 t~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHHh
Confidence 666666666665432 222111111 111 1122211 1112222333333333332
Q ss_pred HHHHhhhcC-----------ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHH
Q 008097 207 ESGEQGRLG-----------KVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYD 275 (577)
Q Consensus 207 ~~~~~~~~g-----------~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 275 (577)
.+......+ ......++........-.|+..+|.+++..-..+|+.+.|..++.+|.+.|++.+..-|-
T Consensus 164 ~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 164 KVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred hCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 222211111 111122222222221114899999999999999999999999999999999998888777
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcC
Q 008097 276 TLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDG 355 (577)
Q Consensus 276 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g 355 (577)
.++-+ .++..-+..+++.|... |+.|+..|+...+-.+.++|+...+.+. .+....+++-+..-+-.|
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~--gv~p~seT~adyvip~l~N~~t~~~~e~-------sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEK--GVQPGSETQADYVIPQLSNGQTKYGEEG-------SQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHh--cCCCCcchhHHHHHhhhcchhhhhcccc-------cchhhhhhHHHHHHHhcc
Confidence 77755 78888888999999988 9999999999888888776663332211 122222222222222222
Q ss_pred -----CH-----HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCC-CHHHHHHHHHHHH
Q 008097 356 -----NV-----EDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG--HGYLP-IASTFNTVLSGLC 422 (577)
Q Consensus 356 -----~~-----~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p-~~~~~~~ll~~~~ 422 (577)
.+ .-....+.+..-.|+.....+|...+.. ..+|+.++..++...|.. ..+.| +...|..++.-|.
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 11 1111122222222444344555544433 337888888888888763 22333 2334666666555
Q ss_pred hc
Q 008097 423 RQ 424 (577)
Q Consensus 423 ~~ 424 (577)
+.
T Consensus 391 rr 392 (1088)
T KOG4318|consen 391 RR 392 (1088)
T ss_pred HH
Confidence 43
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=3.3e-09 Score=109.35 Aligned_cols=197 Identities=12% Similarity=0.022 Sum_probs=99.5
Q ss_pred ChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHH
Q 008097 286 RIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCF 364 (577)
Q Consensus 286 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 364 (577)
++++|...+++..+.++. +...+..+...+...|++++|...|+++.+..|+. ..+..+...+...|++++|...+
T Consensus 319 ~~~~A~~~~~~Al~ldP~---~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 319 AMIKAKEHAIKATELDHN---NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred HHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356666666666654322 44455555555666666666666666666655543 33444555566666666666666
Q ss_pred HHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccC
Q 008097 365 DQMIEEGGVPNV-VIYDCLIHAYCQEERVREASELMKEMTGHGYLPI-ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIG 442 (577)
Q Consensus 365 ~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~ 442 (577)
++..+. .|+. ..+..++..+...|++++|+..+++..+.. .|+ ...+..+..++...|+.++|...+++...
T Consensus 396 ~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--- 469 (553)
T PRK12370 396 NECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST--- 469 (553)
T ss_pred HHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---
Confidence 666654 2321 222223334445566666666666665432 232 22344445555566666666666662222
Q ss_pred CCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 008097 443 RGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGK-GILPDYLTWNSLLICLS 495 (577)
Q Consensus 443 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~ 495 (577)
..| +....+.+...|...| ++|...++.+.+. .-.|...-|..++.+..
T Consensus 470 --~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 520 (553)
T PRK12370 470 --QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAH 520 (553)
T ss_pred --ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHH
Confidence 123 2223344444445555 3555555555432 12233334444444443
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.3e-08 Score=95.64 Aligned_cols=278 Identities=10% Similarity=0.028 Sum_probs=151.2
Q ss_pred CCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCC---CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 008097 112 VKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEP---NDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKV 188 (577)
Q Consensus 112 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l 188 (577)
..-++.+.....+-+...+++.+..++++...+. +...+..-|.++...|+..+-+.+=.++.+.- +-.+.+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 3445556666666677777777777777777653 34455556667777777776666666665542 3345667766
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 008097 189 LELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPN-VDTYNILISSYCETGVLDSALDVFNDMKIDGI 267 (577)
Q Consensus 189 l~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 267 (577)
.--|...|+..+|++.|... .. +.|. ...|-.....|+-.|..|+|+..+....+.=
T Consensus 319 g~YYl~i~k~seARry~SKa-------------------t~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~- 376 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKA-------------------TT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM- 376 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHH-------------------hh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-
Confidence 66666666666666664332 11 1111 2456666667777777777776666654420
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC---
Q 008097 268 SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKL----FPR--- 340 (577)
Q Consensus 268 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~p~--- 340 (577)
+-...-+--+.--|.+.+++..|.+.|...... .+.|+...+-+.-.....+.+.+|..+|+..... .+.
T Consensus 377 ~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai---~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~ 453 (611)
T KOG1173|consen 377 PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI---APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIF 453 (611)
T ss_pred cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc---CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccc
Confidence 101111112223356666777777777666654 2335566666665566666666666666655421 111
Q ss_pred -ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008097 341 -AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVL 418 (577)
Q Consensus 341 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 418 (577)
..+++.+.++|.+++.+++|+..|++.+.. .+.|..++.++.-.|...|+++.|++.|.+... +.||..+...++
T Consensus 454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL 529 (611)
T KOG1173|consen 454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELL 529 (611)
T ss_pred hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHH
Confidence 112334444555555555555555555443 233444555555555555555555555555443 344444444333
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=1.3e-09 Score=96.83 Aligned_cols=232 Identities=15% Similarity=0.081 Sum_probs=195.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHH
Q 008097 240 NILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLY 319 (577)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 319 (577)
+.|..+|.+.|.+.+|.+.|+..++. .|-+.||..|-..|.+..++..|..++..-.+. .+-++....-+.+.+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhHHHHH
Confidence 56788999999999999999998877 667788888999999999999999999998875 3336666667778888
Q ss_pred hcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 008097 320 RENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASEL 398 (577)
Q Consensus 320 ~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 398 (577)
..++.++|.++++...+..|.. .....+...|.-.++++-|.+.+.++...|+. +...|+.+.-+|.-.++++-++.-
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 9999999999999999977654 45556667888899999999999999999885 888999999999999999999999
Q ss_pred HHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHH
Q 008097 399 MKEMTGHGYLPIAS--TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQM 475 (577)
Q Consensus 399 ~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 475 (577)
|++....--.|+.. .|-.+.......|++.-|.+.|+-.+. ..| +.+.++.|.-.-.|.|++++|..+++..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~-----~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT-----SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc-----cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 99988655456543 577777777889999999999995454 234 6788999999999999999999999998
Q ss_pred HHCCCCCCH
Q 008097 476 VGKGILPDY 484 (577)
Q Consensus 476 ~~~~~~p~~ 484 (577)
.+ +.|+.
T Consensus 456 ~s--~~P~m 462 (478)
T KOG1129|consen 456 KS--VMPDM 462 (478)
T ss_pred hh--hCccc
Confidence 73 56664
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.23 E-value=4.8e-09 Score=96.04 Aligned_cols=200 Identities=11% Similarity=-0.011 Sum_probs=110.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVL 315 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 315 (577)
...+..+...|...|++++|...+++..+.. +.+...+..+...|...|++++|.+.++......+ .+...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP---NNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHH
Confidence 3445556666666777777777776665542 23345555566666666666666666666655421 1333444455
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 008097 316 YGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREA 395 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 395 (577)
..+...|++++|.+.+.+.....+ .+.....+..+...+...|++++|
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPL--------------------------------YPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccc--------------------------------cccchHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555554433211 111233455555666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHH
Q 008097 396 SELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQM 475 (577)
Q Consensus 396 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 475 (577)
.+.+.+..+.. +.+...+..+...+...|++++|..++++... . .+++...+..++..+...|+.++|..+.+.+
T Consensus 155 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 155 EKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQ--T--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666665532 12344555566666666666666666663333 1 1224455556666666666666666666655
Q ss_pred H
Q 008097 476 V 476 (577)
Q Consensus 476 ~ 476 (577)
.
T Consensus 230 ~ 230 (234)
T TIGR02521 230 Q 230 (234)
T ss_pred H
Confidence 4
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.23 E-value=3.4e-07 Score=91.00 Aligned_cols=380 Identities=16% Similarity=0.090 Sum_probs=217.1
Q ss_pred CCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH
Q 008097 110 RGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTIT 186 (577)
Q Consensus 110 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~ 186 (577)
..+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|.-..|+.+++.-......|+..+-.
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34556777888888888888998888888888764 345678888888888888888888888765544335433333
Q ss_pred -HHHHHHH-hcCCHhHHHHHHHHHHHh-------------------------------hhcCChhHHHHHHHHHHHcCC-
Q 008097 187 -KVLELLC-SVGRVMDAVEILEESGEQ-------------------------------GRLGKVKGGCRFLKEMERKGC- 232 (577)
Q Consensus 187 -~ll~~~~-~~g~~~~a~~~~~~~~~~-------------------------------~~~g~~~~a~~~~~~~~~~~~- 232 (577)
..-+.|. +.+..+++..+-..++.. .+.-...++.+.+++..+.+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3333333 456677777766666553 111122344555555554432
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHH
Q 008097 233 LPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYN 312 (577)
Q Consensus 233 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 312 (577)
.|++..|- ---|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++.+|+.+.+.....- + .|.....
T Consensus 477 dp~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~--~N~~l~~ 551 (799)
T KOG4162|consen 477 DPLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-G--DNHVLMD 551 (799)
T ss_pred CchHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-h--hhhhhch
Confidence 23333332 23456677788888888887776556677777777777777788888888777665431 1 1111111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCceeh------HHHHHH----hhhcCCHHHHHHHHHH----------------
Q 008097 313 SVLYGLYRENQQDEALEYLKQMEKLFPRAVDR------SLKILG----FCVDGNVEDAKRCFDQ---------------- 366 (577)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------~~l~~~----~~~~g~~~~A~~~~~~---------------- 366 (577)
.-+..-..-++.++++.....+.....+.... ..+... ....++..+|.+....
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence 11111122344444443333222100000000 000000 0000001111110000
Q ss_pred -HHHcCCC--CC------HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 367 -MIEEGGV--PN------VVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEE 436 (577)
Q Consensus 367 -~~~~~~~--p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 436 (577)
+...-.. |+ ...|......+.+.+..++|...+.+.... .| .+..|.-....+...|..++|.+.|..
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 0100011 22 234667777788888888888777777653 33 444555555666777888888888874
Q ss_pred hhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHH--HHHHHHHCCCCCC-HHHHHHHHHHHHhcchHHHH
Q 008097 437 DMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASM--LLVQMVGKGILPD-YLTWNSLLICLSQQTTWLLL 503 (577)
Q Consensus 437 ~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~ 503 (577)
.+. +.| ++.....+..++.+.|+..-|.. ++.++.+ +.|+ ...|-.|-..+.+.|+.+.+
T Consensus 710 Al~-----ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 710 ALA-----LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HHh-----cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHH
Confidence 444 667 56677788888888887766666 7887774 4554 47788888888888887644
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=5.4e-09 Score=95.66 Aligned_cols=188 Identities=13% Similarity=0.077 Sum_probs=136.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 008097 310 PYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ 388 (577)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 388 (577)
.+..+...+...|++++|.+.+++..+..|+ ...+..+...|...|++++|...|++..+.. +.+...+..+...|..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 3445555555666666666666665554443 2334455566667777777777777777653 3456678888899999
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChh
Q 008097 389 EERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQ 466 (577)
Q Consensus 389 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 466 (577)
.|++++|.+.+++..+....| ....+..+...+...|++++|...+++.+. ..| +...+..+...+...|+++
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ-----IDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCcCChHHHHHHHHHHHHcCCHH
Confidence 999999999999998643223 345677778889999999999999996555 344 5678889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchHHHHH
Q 008097 467 SASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWLLLL 504 (577)
Q Consensus 467 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 504 (577)
+|...+++..+. ..++...+..+...+...|+.+...
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999875 3445566777777777778776543
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.21 E-value=1.4e-06 Score=85.07 Aligned_cols=438 Identities=11% Similarity=0.046 Sum_probs=251.8
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCHhhHHH
Q 008097 7 SPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDDYTYAI 86 (577)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~~~~ 86 (577)
.||-..++..-+--+...+.+...++..+.+++..+......----+..++-.+-++|..... .-.+ +-..+.+.|..
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr-~glr-~d~~S~vCwHv 80 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVR-LGLR-NDLKSHVCWHV 80 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHH-HHhc-cCcccchhHHH
Confidence 344444444333344456788888888888876433332221111122222226777777766 3222 22335677887
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCCh
Q 008097 87 LMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEENL 163 (577)
Q Consensus 87 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 163 (577)
+.-.+....++++|.+.|....+.+. .|...+.-+.-.-++.|+++-....-.+..+ .....|..+..++--.|+.
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 77777778899999999999988763 3677777776667777888776666555543 4567899999999999999
Q ss_pred HHHHHHHHHHHhCC-CCCCHhhHHHHHHH------HHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCh
Q 008097 164 VNALVLLEKSFSFG-FVPDVVTITKVLEL------LCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNV 236 (577)
Q Consensus 164 ~~A~~~~~~m~~~g-~~~~~~~~~~ll~~------~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 236 (577)
..|..+.++..+.. -.|+...+.-.... ....|.++.|.+.+. ..... +.-..
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~-------------------~~e~~-i~Dkl 219 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL-------------------DNEKQ-IVDKL 219 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH-------------------hhhhH-HHHHH
Confidence 99999998887654 24555555443322 233455454444332 22211 00011
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHH-HHHcCCChHHHH-HHHHHHHhccCCCCCCcccHHHH
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIR-GLCSGGRIDDGL-KILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~-~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
..-..-...+.+.+++++|..++..++.. .||..-|.-.+. ++.+.-+.-++. .+|....+.-+.. ..-..+
T Consensus 220 a~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~----e~p~Rl 293 (700)
T KOG1156|consen 220 AFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH----ECPRRL 293 (700)
T ss_pred HHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc----ccchhc
Confidence 12233445677888888888888888876 566665554443 333333333333 5565554431111 000000
Q ss_pred HHHHHhcCCHHHH-HHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHc--C------------CCCCHhhH
Q 008097 315 LYGLYRENQQDEA-LEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEE--G------------GVPNVVIY 379 (577)
Q Consensus 315 i~~~~~~g~~~~A-~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~------------~~p~~~~~ 379 (577)
--.......+.+. -+++....+. .-+..+..+...|-.....+--.++...+... | -+|....|
T Consensus 294 plsvl~~eel~~~vdkyL~~~l~K-g~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllW 372 (700)
T KOG1156|consen 294 PLSVLNGEELKEIVDKYLRPLLSK-GVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLW 372 (700)
T ss_pred cHHHhCcchhHHHHHHHHHHHhhc-CCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHH
Confidence 0011111122222 2222222221 00111122222211111111111111111110 1 25777766
Q ss_pred H--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHH
Q 008097 380 D--CLIHAYCQEERVREASELMKEMTGHGYLPIAS-TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLI 456 (577)
Q Consensus 380 ~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li 456 (577)
+ .++..|-+.|+++.|+.+++..+++ .|+.+ .|..=.+.+.+.|+.++|..+++ ..++.+ .||...-.--+
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~-ea~elD---~aDR~INsKcA 446 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLD-EAQELD---TADRAINSKCA 446 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHH-HHHhcc---chhHHHHHHHH
Confidence 6 5667888999999999999999974 57655 46666789999999999999999 555222 45555555666
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCC
Q 008097 457 KALCEKGGFQSASMLLVQMVGKGI 480 (577)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~m~~~~~ 480 (577)
.-..|+++.++|.++.-...+.|.
T Consensus 447 KYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 447 KYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHccccHHHHHHHHHhhhccc
Confidence 778899999999999999987765
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=1e-08 Score=105.67 Aligned_cols=170 Identities=16% Similarity=-0.023 Sum_probs=104.1
Q ss_pred cCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 008097 321 ENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELM 399 (577)
Q Consensus 321 ~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 399 (577)
.+++++|...++++.+..|+. ..+..+...+...|++++|...|++..+.+ +.+...|..+...|...|++++|+..+
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 345677777777777766643 345555566667777777777777777752 224556677777777777777777777
Q ss_pred HHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 400 KEMTGHGYLPIAS-TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 400 ~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
++..+. .|+.. .+..++..+...|++++|...+++.+. . ..| ++..+..+..+|...|++++|...++++..
T Consensus 396 ~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~--~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 396 NECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRS--Q--HLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHH--h--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 777763 35432 223334445566777777777774333 1 124 344466667777777777777777777652
Q ss_pred CCCCCCH-HHHHHHHHHHHhcch
Q 008097 478 KGILPDY-LTWNSLLICLSQQTT 499 (577)
Q Consensus 478 ~~~~p~~-~~~~~ll~~~~~~~~ 499 (577)
..|+. ..++.+...+...|+
T Consensus 470 --~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 470 --QEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred --ccchhHHHHHHHHHHHhccHH
Confidence 34443 334444444455554
No 70
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.4e-06 Score=88.97 Aligned_cols=179 Identities=16% Similarity=0.165 Sum_probs=135.9
Q ss_pred CChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHH
Q 008097 285 GRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCF 364 (577)
Q Consensus 285 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 364 (577)
+.++.|.+.-++.. .+..|..+..+-.+.|...+|.+-|-+. .|+..|.-++....+.|.+++-.+.+
T Consensus 1089 ~~ldRA~efAe~~n--------~p~vWsqlakAQL~~~~v~dAieSyika----dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN--------EPAVWSQLAKAQLQGGLVKDAIESYIKA----DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred hhHHHHHHHHHhhC--------ChHHHHHHHHHHHhcCchHHHHHHHHhc----CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 44555555444332 3457888888888888888888776544 35667888899999999999999988
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCC
Q 008097 365 DQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRG 444 (577)
Q Consensus 365 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~ 444 (577)
....++...|.+. +.+|-+|++.++..+..+++ .-||......+.+-|...|.++.|.-+|. .
T Consensus 1157 ~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~-~------- 1219 (1666)
T KOG0985|consen 1157 LMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS-N------- 1219 (1666)
T ss_pred HHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH-H-------
Confidence 8887765555544 57888999999887765543 34888888899999999999999988888 3
Q ss_pred CCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchHHH
Q 008097 445 SLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWLL 502 (577)
Q Consensus 445 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 502 (577)
+..|..|...+...|.++.|.+.-++.- +..+|..+--+|...+.+.+
T Consensus 1220 ----vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1220 ----VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRL 1267 (1666)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhH
Confidence 3358888889999999998888777663 56789988888876666544
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=4.2e-07 Score=82.00 Aligned_cols=407 Identities=11% Similarity=0.059 Sum_probs=196.4
Q ss_pred HhcCHHHHHHHHHHHHhhcCCCCCHhhHHH-HHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHH
Q 008097 57 VKEDIDLARAFYRKKMMASGVQGDDYTYAI-LMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRA 135 (577)
Q Consensus 57 ~~~~~~~a~~~~~~~m~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 135 (577)
++.++..|+.+++ .-...+-+ .....+. +..++...|++++|...+..+.... .++...+-.|.-.+.-.|.+.+|
T Consensus 34 s~rDytGAislLe-fk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 34 SNRDYTGAISLLE-FKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred hcccchhHHHHHH-Hhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 3348999998887 32221111 1112222 2344558999999999999887753 55667777777777777999999
Q ss_pred HHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh----
Q 008097 136 RSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ---- 211 (577)
Q Consensus 136 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---- 211 (577)
..+-.+.++ ++..-..|...--+.++-++-..+.+.+... ..--.++.......-.+.+|.+++..++..
T Consensus 111 ~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 111 KSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred HHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 998777653 2222333445555667777766666655421 122334444444445677777777766554
Q ss_pred -----------hhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cCChhHHHHHHHHHHHCCC-----------
Q 008097 212 -----------GRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCE--TGVLDSALDVFNDMKIDGI----------- 267 (577)
Q Consensus 212 -----------~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~----------- 267 (577)
.+..-++-+.++++-..+. ++-+....|.......+ +|+. |.+-.+.+.+.+-
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~--ae~E~k~ladN~~~~~~f~~~l~r 261 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRT--AEDEKKELADNIDQEYPFIEYLCR 261 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccch--hHHHHHHHHhcccccchhHHHHHH
Confidence 3333444444444433332 11122222322222222 1111 1111111111000
Q ss_pred ---------------CcC-----HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHH--HHhcCC--
Q 008097 268 ---------------SWN-----FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYG--LYRENQ-- 323 (577)
Q Consensus 268 ---------------~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~-- 323 (577)
-|. +..-..++-.|.+.+++.+|..+.+.+.- +..+.-++.+ ++..|+
T Consensus 262 HNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--------ttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 262 HNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--------TTPYEYILKGVVFAALGQET 333 (557)
T ss_pred cCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--------CChHHHHHHHHHHHHhhhhc
Confidence 000 00111122334555555555555443321 1112222222 112222
Q ss_pred -----HHHHHHHHHHHhhc--CCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 008097 324 -----QDEALEYLKQMEKL--FPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREA 395 (577)
Q Consensus 324 -----~~~A~~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 395 (577)
..-|.+.|+-.-+. .-| ....-.+...+.-..++++.+-.++.+...-...|...+| +.++++..|.+.+|
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~ea 412 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEA 412 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHH
Confidence 12222222222111 011 1112233333444445555555555555543333333333 55666777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhhcccCCCCCC-Cc-ccHHHHHHHHHHcCChhHHHHHH
Q 008097 396 SELMKEMTGHGYLPIASTFNTVL-SGLCRQGNVGTALKLVEEDMRGIGRGSLP-GS-GHYSPLIKALCEKGGFQSASMLL 472 (577)
Q Consensus 396 ~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~-~~~~~li~~~~~~g~~~~A~~~~ 472 (577)
.++|-+.....++ |..+|.+++ +.|.+.|.++-|+.++- .+. .| +. .....+.+-|.+++.+=-|.+.|
T Consensus 413 Eelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~l-k~~------t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 413 EELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMML-KTN------TPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred HHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHH-hcC------CchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777665543332 444554443 44467777777777665 333 22 22 22334445566677766666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH
Q 008097 473 VQMVGKGILPDYLTWNSLLICL 494 (577)
Q Consensus 473 ~~m~~~~~~p~~~~~~~ll~~~ 494 (577)
+.+. -..|++.-|..--+||
T Consensus 485 d~lE--~lDP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 485 DELE--ILDPTPENWEGKRGAC 504 (557)
T ss_pred hHHH--ccCCCccccCCccchH
Confidence 6665 2456666665555554
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=4e-06 Score=77.47 Aligned_cols=193 Identities=12% Similarity=0.049 Sum_probs=96.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL 318 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 318 (577)
|..-.......++++.|+.+-.+.++.. +.+...|..-...+...++.++|.-.|+..+... +.+..+|.-|+.+|
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La---p~rL~~Y~GL~hsY 378 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA---PYRLEIYRGLFHSY 378 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc---hhhHHHHHHHHHHH
Confidence 3333333444455555555555554332 1122233222334445555555555555554431 12444555555555
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH-HHHHhc-CCHHHHH
Q 008097 319 YRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLI-HAYCQE-ERVREAS 396 (577)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li-~~~~~~-g~~~~A~ 396 (577)
...|.+.+|.-.-....+. .+.+..+.+.+. ..+.-. .--++|.
T Consensus 379 LA~~~~kEA~~~An~~~~~----------------------------------~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRL----------------------------------FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred HhhchHHHHHHHHHHHHHH----------------------------------hhcchhhhhhhcceeeccCchhHHHHH
Confidence 5555555555444433332 222333333332 222111 1125566
Q ss_pred HHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHH
Q 008097 397 ELMKEMTGHGYLPIAS-TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQM 475 (577)
Q Consensus 397 ~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 475 (577)
+++++-.. +.|+.. ..+.+...|...|..+.+..++++.+. ..||....+.|.+.+...+.+++|.+.|...
T Consensus 425 kf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~-----~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 425 KFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI-----IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh-----hccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 66666554 445543 345555666666666666666665555 4566666666666666666666666666666
Q ss_pred H
Q 008097 476 V 476 (577)
Q Consensus 476 ~ 476 (577)
.
T Consensus 498 L 498 (564)
T KOG1174|consen 498 L 498 (564)
T ss_pred H
Confidence 5
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.11 E-value=9.9e-09 Score=100.90 Aligned_cols=240 Identities=19% Similarity=0.172 Sum_probs=159.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCcCHHHH-HHHHHHHHcCCChHHHHHHHHHHHhccC---C--
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKID-----G-ISWNFVTY-DTLIRGLCSGGRIDDGLKILQLMEDSKE---G-- 303 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~-- 303 (577)
..+...+...|...|+++.|..+++...+. | ..|...+. +.+...|...+++++|..+|+.+..... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345556888999999999999999987653 2 12333333 3466788889999999999988765311 1
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhc--------CCCce-ehHHHHHHhhhcCCHHHHHHHHHHHHHc---C
Q 008097 304 SKGRISPYNSVLYGLYRENQQDEALEYLKQMEKL--------FPRAV-DRSLKILGFCVDGNVEDAKRCFDQMIEE---G 371 (577)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~ 371 (577)
.+.-..+++.|...|.+.|++++|..+++++.++ .|... .++.+...|+..+.+++|..++.+..+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1112245677777899999999999888887653 11111 2345566677888888888887766553 1
Q ss_pred CCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 008097 372 GVPN----VVIYDCLIHAYCQEERVREASELMKEMTGH----G--YLPI-ASTFNTVLSGLCRQGNVGTALKLVEEDMRG 440 (577)
Q Consensus 372 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~ 440 (577)
+.++ ..+++.|...|...|++++|.+++++.+.. + ..+. ...++.+..+|.+.+..++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~- 437 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD- 437 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH-
Confidence 1222 346788888888888888888888877631 1 1222 33567777788888888888777773222
Q ss_pred cCCCCCC----CcccHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 441 IGRGSLP----GSGHYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 441 ~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
+-.-+.| ...+|..|..+|.+.|++++|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1112223 23567778888888888888888777665
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.07 E-value=1.2e-07 Score=93.31 Aligned_cols=252 Identities=14% Similarity=0.124 Sum_probs=166.0
Q ss_pred CCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC----------CCce-eHHHHHHHHHhcCChHHHHHHHHHHHhC----
Q 008097 112 VKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE----------PNDV-TFSILICAYCKEENLVNALVLLEKSFSF---- 176 (577)
Q Consensus 112 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~---- 176 (577)
.+.-..+...|..+|...|+++.|..+|+...+ +.+. ..+.+...|...+++.+|..+|+++...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 333345666688899999999999999887653 2222 2234566788899999999999998653
Q ss_pred -CC-CC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCh
Q 008097 177 -GF-VP-DVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNV-DTYNILISSYCETGVL 252 (577)
Q Consensus 177 -g~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~ 252 (577)
|- .| -..+++.|..+|.+.|++++|...++.+ .++++..... ..|.+ ..++.+...+...+++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A------------l~I~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~ 341 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA------------LEIYEKLLGA-SHPEVAAQLSELAAILQSMNEY 341 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH------------HHHHHHhhcc-ChHHHHHHHHHHHHHHHHhcch
Confidence 21 12 2457778888999999999999997664 4455552221 11222 2356677788889999
Q ss_pred hHHHHHHHHHHHC---CCCcC----HHHHHHHHHHHHcCCChHHHHHHHHHHHhccC--CC--CC-CcccHHHHHHHHHh
Q 008097 253 DSALDVFNDMKID---GISWN----FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE--GS--KG-RISPYNSVLYGLYR 320 (577)
Q Consensus 253 ~~A~~~~~~m~~~---g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~--~~-~~~~~~~li~~~~~ 320 (577)
++|..+++...+. -+.++ ..+++.|...|.+.|++++|.++|+.+..... +. .+ .-..++.|...|.+
T Consensus 342 Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~ 421 (508)
T KOG1840|consen 342 EEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE 421 (508)
T ss_pred hHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH
Confidence 9999999876542 11222 35677888888888888888888887765421 11 11 12345666666777
Q ss_pred cCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 008097 321 ENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMK 400 (577)
Q Consensus 321 ~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 400 (577)
.+.+.+|.++|.+...+ . .....+.+-...+|..|...|.+.|+++.|+++.+
T Consensus 422 ~k~~~~a~~l~~~~~~i--------------------------~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 422 LKKYEEAEQLFEEAKDI--------------------------M-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred hcccchHHHHHHHHHHH--------------------------H-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 77777776666554331 1 11111122234578888888888888888888877
Q ss_pred HHH
Q 008097 401 EMT 403 (577)
Q Consensus 401 ~m~ 403 (577)
...
T Consensus 475 ~~~ 477 (508)
T KOG1840|consen 475 KVL 477 (508)
T ss_pred HHH
Confidence 665
No 75
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.05 E-value=1.2e-05 Score=78.74 Aligned_cols=415 Identities=14% Similarity=0.105 Sum_probs=199.0
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHH
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAI 86 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ 86 (577)
|-...++....-.+...|+-++|........+.++ .+.+.|..+--.+... ++++|+..|. .....+ +-|...|.-
T Consensus 38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~-nAl~~~-~dN~qilrD 114 (700)
T KOG1156|consen 38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYR-NALKIE-KDNLQILRD 114 (700)
T ss_pred CccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHH-HHHhcC-CCcHHHHHH
Confidence 33344444444455566777777777777665432 4556665544444444 7778887777 333322 123444444
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC-----CCceeHHHHH------H
Q 008097 87 LMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE-----PNDVTFSILI------C 155 (577)
Q Consensus 87 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li------~ 155 (577)
+.-.-++.++++.......++.+.. +.....|..+..++.-.|+...|..+.+...+ ++...+.-.. .
T Consensus 115 lslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~ 193 (700)
T KOG1156|consen 115 LSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQ 193 (700)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 4444455666666666655555542 22444566666666666666666666655442 3333222211 2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHhcCCHhHHHHHHHHHHHh---------------hhcCChhH
Q 008097 156 AYCKEENLVNALVLLEKSFSFGFVPDVVTI-TKVLELLCSVGRVMDAVEILEESGEQ---------------GRLGKVKG 219 (577)
Q Consensus 156 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~---------------~~~g~~~~ 219 (577)
...++|..++|++.+..-... ..|-..+ -+-...+.+.+++++|..++..++.. .+-.+..+
T Consensus 194 i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~ 271 (700)
T KOG1156|consen 194 ILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLE 271 (700)
T ss_pred HHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHH
Confidence 334555566665555433211 1111111 12223344455555555544443332 00000011
Q ss_pred HH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008097 220 GC-RFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLME 298 (577)
Q Consensus 220 a~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 298 (577)
+. .+|....+. ++.....--.=++......-.+..-.++..+.+.|+++- +..+...|-.....+-..++...+.
T Consensus 272 ~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~ 347 (700)
T KOG1156|consen 272 ALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQ 347 (700)
T ss_pred HHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHH
Confidence 11 112222211 000000000000000011112333344455555555532 2223332322111111111111111
Q ss_pred hccCC------------CCCCcccHH--HHHHHHHhcCCHHHHHHHHHHHhhcCCCcee-hHHHHHHhhhcCCHHHHHHH
Q 008097 299 DSKEG------------SKGRISPYN--SVLYGLYRENQQDEALEYLKQMEKLFPRAVD-RSLKILGFCVDGNVEDAKRC 363 (577)
Q Consensus 299 ~~~~~------------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~ 363 (577)
..-.+ .+|....|+ .++..+-..|+++.|..+++......|+.+. |.+-...+...|+++.|...
T Consensus 348 ~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~ 427 (700)
T KOG1156|consen 348 HSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAW 427 (700)
T ss_pred hhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHH
Confidence 11001 134444444 3456677788888888888888877676544 34445677788888888888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--------HHHH--HHHHHhcCCHHHHHHH
Q 008097 364 FDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAST--------FNTV--LSGLCRQGNVGTALKL 433 (577)
Q Consensus 364 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--------~~~l--l~~~~~~g~~~~a~~~ 433 (577)
+++..+.+ .||...-.--..-..+..+.++|.++.....+.|. +... |-.+ ..+|.+.|++..|++-
T Consensus 428 l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKk 504 (700)
T KOG1156|consen 428 LDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKK 504 (700)
T ss_pred HHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHH
Confidence 88887752 24544433444555667888888888888777664 2221 1111 2356677777666665
Q ss_pred HH
Q 008097 434 VE 435 (577)
Q Consensus 434 ~~ 435 (577)
|.
T Consensus 505 fh 506 (700)
T KOG1156|consen 505 FH 506 (700)
T ss_pred Hh
Confidence 55
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=1.1e-07 Score=89.76 Aligned_cols=126 Identities=16% Similarity=0.002 Sum_probs=66.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHH
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYG 317 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 317 (577)
.|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++|...|+...+.++. +...|..+...
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~ 141 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Confidence 35555555666666666666666665542 224555666666666666666666666666554222 33445555555
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHH
Q 008097 318 LYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQM 367 (577)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 367 (577)
+...|++++|.+.|+...+..|+..........+...++.++|...|.+.
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 55566666666666665555444321111111122334455555555443
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=7.2e-08 Score=85.91 Aligned_cols=229 Identities=12% Similarity=0.054 Sum_probs=168.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHhccC--CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH-HHHHHHHhc
Q 008097 119 YNTLIHSLCKNGKVGRARSLMSDMEE--PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTIT-KVLELLCSV 195 (577)
Q Consensus 119 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~ 195 (577)
-+.+.+.|.+.|.+.+|.+.|+...+ |-+.||-.|-+.|.+-.+++.|+.+|.+-++. .|-.+||. .+...+-..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 36778888899999999988887653 67788888889999999999999998887653 45555553 344555555
Q ss_pred CCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHH
Q 008097 196 GRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYD 275 (577)
Q Consensus 196 g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 275 (577)
++.++|.++++ ...+.. +.++.....+...|.-.++++-|+..|+++++.|+. +...|.
T Consensus 304 ~~~~~a~~lYk-------------------~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~ 362 (478)
T KOG1129|consen 304 EQQEDALQLYK-------------------LVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFC 362 (478)
T ss_pred HhHHHHHHHHH-------------------HHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHh
Confidence 66666666554 444432 225666667777788888889999999988888865 777788
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhc
Q 008097 276 TLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVD 354 (577)
Q Consensus 276 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 354 (577)
.+.-+|.-.+++|-+...|.+....-........+|-.+.......|++.-|.+.|+-.....|+ ...++.+...-.+.
T Consensus 363 NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~ 442 (478)
T KOG1129|consen 363 NIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS 442 (478)
T ss_pred hHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence 88888888888888888888776542222223356777777788888888888888888776554 45677777777788
Q ss_pred CCHHHHHHHHHHHHHc
Q 008097 355 GNVEDAKRCFDQMIEE 370 (577)
Q Consensus 355 g~~~~A~~~~~~~~~~ 370 (577)
|+++.|..+++.....
T Consensus 443 G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 443 GDILGARSLLNAAKSV 458 (478)
T ss_pred CchHHHHHHHHHhhhh
Confidence 9999999998888763
No 78
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.03 E-value=1e-06 Score=86.96 Aligned_cols=196 Identities=10% Similarity=0.128 Sum_probs=140.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcC
Q 008097 243 ISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYREN 322 (577)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 322 (577)
|.+......+.+|+.+++.++... .-.--|..+.+.|+..|+++.|.++|.+.. .++-.|.+|.++|
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----------hhHHHHHHHhccc
Confidence 445556778888888888887652 223446777888999999999999887542 3566788899999
Q ss_pred CHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008097 323 QQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEM 402 (577)
Q Consensus 323 ~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (577)
+|++|.++-.+..........|.+-..-.-+.|++.+|.++|-.+.. |+. -|..|-++|..+..+++.++-
T Consensus 806 kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred cHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHh
Confidence 99999888776655333344454545556678888888888766643 553 477888999988888887765
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHH
Q 008097 403 TGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQM 475 (577)
Q Consensus 403 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 475 (577)
.-. .-..|...+..-+-..|+...|..-|- .. .-|..-+++|-..+.|++|.++-+.-
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~~fl-ea-----------~d~kaavnmyk~s~lw~dayriakte 934 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEEHFL-EA-----------GDFKAAVNMYKASELWEDAYRIAKTE 934 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHHHHH-hh-----------hhHHHHHHHhhhhhhHHHHHHHHhcc
Confidence 321 113366667777888899999888776 22 23677888899999999988876653
No 79
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=7.6e-06 Score=79.25 Aligned_cols=433 Identities=14% Similarity=0.122 Sum_probs=216.2
Q ss_pred CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHH--HHHHHh--c-CHHHHHHHHHHHHhhcCCCCC
Q 008097 6 QSPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSI--LDVLVK--E-DIDLARAFYRKKMMASGVQGD 80 (577)
Q Consensus 6 g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~--~-~~~~a~~~~~~~m~~~~~~~~ 80 (577)
+.|.+..++..-+-+..+.+.+++|+.+.+.-. -..+.+.. =.+|+. . ..++|+..+. |..++
T Consensus 41 ~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~------~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~------~~~~~ 108 (652)
T KOG2376|consen 41 IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG------ALLVINSFFFEKAYCEYRLNKLDEALKTLK------GLDRL 108 (652)
T ss_pred cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc------hhhhcchhhHHHHHHHHHcccHHHHHHHHh------ccccc
Confidence 457788899999999999999999996555432 11222322 445554 2 7888888776 23333
Q ss_pred -HhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHH---
Q 008097 81 -DYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKP-NSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILIC--- 155 (577)
Q Consensus 81 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~--- 155 (577)
..+...-.+.|.+.+++++|..+|+.+.+++.+. +...-..++.. +-.-.+. +.+..++....+|..+.+
T Consensus 109 ~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~-~~q~v~~v~e~syel~yN~Ac 183 (652)
T KOG2376|consen 109 DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ-LLQSVPEVPEDSYELLYNTAC 183 (652)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH-HHHhccCCCcchHHHHHHHHH
Confidence 3356666677889999999999999998876431 11111222211 1111222 455555544556655543
Q ss_pred HHHhcCChHHHHHHHHHHHhCC-------CCC--CHhh-----HHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHH
Q 008097 156 AYCKEENLVNALVLLEKSFSFG-------FVP--DVVT-----ITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGC 221 (577)
Q Consensus 156 ~~~~~~~~~~A~~~~~~m~~~g-------~~~--~~~~-----~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~ 221 (577)
.++..|++.+|+++++...+.+ -.- +... -..+.-.+...|+..+|..++..+++.-.......|.
T Consensus 184 ~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av 263 (652)
T KOG2376|consen 184 ILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAV 263 (652)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHH
Confidence 4567899999999998883321 011 1111 1112233455677777777766665541111111111
Q ss_pred HHHHHHHH-cCCCCChhh-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHH-HHHHHHHHcCCChHHHHHHHHHHH
Q 008097 222 RFLKEMER-KGCLPNVDT-YNILISSYCETGVLDSALDVFNDMKIDGISWNFVTY-DTLIRGLCSGGRIDDGLKILQLME 298 (577)
Q Consensus 222 ~~~~~~~~-~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~ 298 (577)
-. ..+.. .+.. +... .+..+.--......+..+.-|..-.. ..+.. +.++..| .+..+.+.++-..+.
T Consensus 264 ~~-NNLva~~~d~-~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk-----~~i~~N~~lL~l~--tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 264 AV-NNLVALSKDQ-NYFDGDLLKSKKSQVFKLAEFLLSKLSKKQK-----QAIYRNNALLALF--TNKMDQVRELSASLP 334 (652)
T ss_pred Hh-cchhhhcccc-ccCchHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHH--hhhHHHHHHHHHhCC
Confidence 00 00000 0000 0000 00000000000111222222221111 11222 2233333 234444444433332
Q ss_pred hccCCCCCCcccHHHHHHHHH--hcCCHHHHHHHHHHHhhcCCCce--ehHHHHHHhhhcCCHHHHHHHHH--------H
Q 008097 299 DSKEGSKGRISPYNSVLYGLY--RENQQDEALEYLKQMEKLFPRAV--DRSLKILGFCVDGNVEDAKRCFD--------Q 366 (577)
Q Consensus 299 ~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~--------~ 366 (577)
+..|.. .+..++..+. +...+.++.+++....+..|... ...+.+......|+++.|.+++. .
T Consensus 335 ----~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 335 ----GMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred ----ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 222222 2333332221 22245666666666666555442 23333444556777777777777 4
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHhhcc
Q 008097 367 MIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGH--GYLPIASTFNTVL----SGLCRQGNVGTALKLVEEDMRG 440 (577)
Q Consensus 367 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll----~~~~~~g~~~~a~~~~~~~m~~ 440 (577)
+.+.+..| .+...++..|.+.++.+.|..++.+.+.. .-.+......+++ ..-.+.|.-++|...++ .+.
T Consensus 410 ~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le-el~- 485 (652)
T KOG2376|consen 410 ILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE-ELV- 485 (652)
T ss_pred hhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH-HHH-
Confidence 54443333 33445556666666655666666555421 0112222222222 22245677777777777 443
Q ss_pred cCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 441 IGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 441 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
. -..+|..+..++|.+|++. +++.|..+-+.++
T Consensus 486 -k-~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 486 -K-FNPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred -H-hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 1 1234777777777777776 5677777766653
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.01 E-value=1.9e-06 Score=85.91 Aligned_cols=204 Identities=13% Similarity=0.085 Sum_probs=141.5
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHH
Q 008097 7 SPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYA 85 (577)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~ 85 (577)
+.-++.+|..|.-+...+|+++.+.+.|++....- -.....|+.+-..|+.. .-..|+.+++..+......+|...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 45688899999999999999999999999986432 23567788888888887 77889999885444433233444444
Q ss_pred HHHHHHH-hcCCHhHHHHHHHHHHhC--CC--CCCcchHHHHHHHHHhc-----------CCHhHHHHHHHhccCCC---
Q 008097 86 ILMKGLC-LTNRVGDGFKLLHVMKSR--GV--KPNSVIYNTLIHSLCKN-----------GKVGRARSLMSDMEEPN--- 146 (577)
Q Consensus 86 ~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~--- 146 (577)
..-+.|. +.+.+++++..-.+++.. |. ......|..+.-+|... ....++.+.+++..+.|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4445555 567788888777777662 11 11233344444444322 11345667777775433
Q ss_pred ceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh
Q 008097 147 DVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ 211 (577)
Q Consensus 147 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 211 (577)
...-..+.--|+..++.+.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+.....
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 22222333457788999999999999999877788999999999999999999999998776544
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.01 E-value=6.1e-07 Score=89.59 Aligned_cols=125 Identities=14% Similarity=0.054 Sum_probs=61.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehH-HHHHHhhh
Q 008097 275 DTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRS-LKILGFCV 353 (577)
Q Consensus 275 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~l~~~~~~ 353 (577)
..+...|...|++++|.+.++......|. .+..|..-...+-+.|++.+|.+.++..++..+...-.| -....+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt---~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPT---LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 33445555566666666666655554211 233444455555556666666666665555443332222 23334445
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHh------hH--HHHHHHHHhcCCHHHHHHHHHHH
Q 008097 354 DGNVEDAKRCFDQMIEEGGVPNVV------IY--DCLIHAYCQEERVREASELMKEM 402 (577)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~~p~~~------~~--~~li~~~~~~g~~~~A~~~~~~m 402 (577)
+|++++|.+++....+.+..|-.. .| .-...+|.+.|++..|++.|...
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 566666665555555443222111 12 23345566666666665555444
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.98 E-value=2.9e-07 Score=86.85 Aligned_cols=230 Identities=13% Similarity=0.012 Sum_probs=160.7
Q ss_pred cCChhHHHHHHHHHHHCC-CCcC--HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHH
Q 008097 249 TGVLDSALDVFNDMKIDG-ISWN--FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQD 325 (577)
Q Consensus 249 ~g~~~~A~~~~~~m~~~g-~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 325 (577)
.+..+.++.-+.++.... ..|+ ...|..+...|...|+.++|...|+...+.++. +...|+.+...+...|+++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD---MADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHH
Confidence 456778888888887542 2222 355777788899999999999999999886433 6788999999999999999
Q ss_pred HHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 326 EALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 326 ~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+|...|++..+..|+. ..+..+...+...|++++|.+.|++..+. .|+..........+...++.++|++.|.+...
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 9999999999988864 56677788889999999999999999985 34432222222234457789999999977654
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCC--CCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 008097 405 HGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGR--GSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGIL 481 (577)
Q Consensus 405 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~--~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 481 (577)
. ..|+...+ .+ .....|+..++ ..++........ .+.| ..+.|..+...+...|++++|...|++..+.+ .
T Consensus 194 ~-~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~ 267 (296)
T PRK11189 194 K-LDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-V 267 (296)
T ss_pred h-CCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 3 23443222 22 22335555444 244312210001 1122 34679999999999999999999999998542 3
Q ss_pred CCHHHHHH
Q 008097 482 PDYLTWNS 489 (577)
Q Consensus 482 p~~~~~~~ 489 (577)
||.+-+..
T Consensus 268 ~~~~e~~~ 275 (296)
T PRK11189 268 YNFVEHRY 275 (296)
T ss_pred chHHHHHH
Confidence 45544443
No 83
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.3e-05 Score=74.25 Aligned_cols=255 Identities=18% Similarity=0.095 Sum_probs=184.2
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHH-HHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCccc
Q 008097 232 CLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVT-YDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISP 310 (577)
Q Consensus 232 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 310 (577)
++-|+.....+...+...|+.++|...|++.+.. .|+..+ .....-.+.+.|+.+.-..+...+.... +.....
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~---~~ta~~ 302 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV---KYTASH 302 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh---hcchhh
Confidence 4447778889999999999999999999998754 333222 1111223456788888777777766541 113444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCcee-hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 008097 311 YNSVLYGLYRENQQDEALEYLKQMEKLFPRAVD-RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQE 389 (577)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 389 (577)
|-.-.......++++.|+.+-++..+..|+.+. +-.-...+...|+.++|.-.|+..+.. -+-+..+|.-++.+|...
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhh
Confidence 555556667788999999999999888776554 333345667889999999999999874 224688999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHhhcccCCCCCCC-cccHHHHHHHHHHcCChh
Q 008097 390 ERVREASELMKEMTGHGYLPIASTFNTVL-SGLC-RQGNVGTALKLVEEDMRGIGRGSLPG-SGHYSPLIKALCEKGGFQ 466 (577)
Q Consensus 390 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~g~~~~a~~~~~~~m~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 466 (577)
|+..||.-+-+...+. +..+..+...+. ..|. ...--++|.+++++.++ +.|+ ....+.+...+.+.|+.+
T Consensus 382 ~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~-----~~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK-----INPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred chHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc-----cCCccHHHHHHHHHHHHhhCccc
Confidence 9999999887776542 333455554442 3332 23335889999997666 6774 445677888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchH
Q 008097 467 SASMLLVQMVGKGILPDYLTWNSLLICLSQQTTW 500 (577)
Q Consensus 467 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 500 (577)
++..++++.. -..||....+.|-.-++..+..
T Consensus 456 D~i~LLe~~L--~~~~D~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 456 DIIKLLEKHL--IIFPDVNLHNHLGDIMRAQNEP 487 (564)
T ss_pred hHHHHHHHHH--hhccccHHHHHHHHHHHHhhhH
Confidence 9999999988 3678988888777777655543
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.95 E-value=1.2e-06 Score=87.51 Aligned_cols=290 Identities=16% Similarity=0.086 Sum_probs=170.4
Q ss_pred HHHHhcCCHhHHHHHHHhccC--CCceeH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-hcCCHh
Q 008097 124 HSLCKNGKVGRARSLMSDMEE--PNDVTF-SILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLC-SVGRVM 199 (577)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~-~~g~~~ 199 (577)
..+...|++++|++.++.-.. .|..+| ......+.+.|+.++|...|..+.+.+ |+...|...+..+. -.....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 345666777777777766443 343333 344566677777777777777777654 44444443333332 111000
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCcCHHHHHHHH
Q 008097 200 DAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVL-DSALDVFNDMKIDGISWNFVTYDTLI 278 (577)
Q Consensus 200 ~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~ll 278 (577)
..+.+.-..+++++...- |.....-.+.-.+..-..+ ..+...+..+...|+| .+|+.+-
T Consensus 90 --------------~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk 150 (517)
T PF12569_consen 90 --------------DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLK 150 (517)
T ss_pred --------------cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHH
Confidence 011122223344443332 2222221121112221222 2344555666777766 3455555
Q ss_pred HHHHcCCChHHHHHHHHHHHhcc------------CCCCCCcccH--HHHHHHHHhcCCHHHHHHHHHHHhhcCCCcee-
Q 008097 279 RGLCSGGRIDDGLKILQLMEDSK------------EGSKGRISPY--NSVLYGLYRENQQDEALEYLKQMEKLFPRAVD- 343 (577)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~~~~~~------------~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~- 343 (577)
..|....+.+-..+++......- ...+|....| .-+...|...|++++|+++.++..+..|+.+.
T Consensus 151 ~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~el 230 (517)
T PF12569_consen 151 PLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVEL 230 (517)
T ss_pred HHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH
Confidence 56665555555555555543320 0122333334 44566678889999999999999888887544
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--------HHH
Q 008097 344 RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAS--------TFN 415 (577)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------~~~ 415 (577)
|..-...|-+.|++.+|.+.++....... -|...-+-.+..+.+.|+.++|.+++....+.+..|-.. -..
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 55567788889999999999998888643 366777777788888999999999988888766544221 124
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 008097 416 TVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 416 ~ll~~~~~~g~~~~a~~~~~ 435 (577)
....+|.+.|++..|++.|.
T Consensus 310 e~a~a~~r~~~~~~ALk~~~ 329 (517)
T PF12569_consen 310 ECAEAYLRQGDYGLALKRFH 329 (517)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 45667888888888887776
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.95 E-value=2.2e-06 Score=87.59 Aligned_cols=197 Identities=10% Similarity=-0.009 Sum_probs=121.4
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHH
Q 008097 13 IFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGL 91 (577)
Q Consensus 13 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~ 91 (577)
+|..|...|...-+...|.+.|+...+.+. -+...+..+...|+.. +++.|..+.-..-.......-...|...--.+
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 577777777776677788888888866432 3566777788888887 88888776431111111111112233333345
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHH---HHHHHhcCChHHHHH
Q 008097 92 CLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSIL---ICAYCKEENLVNALV 168 (577)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~A~~ 168 (577)
.+.++...+..-|+...+..+ .|...|..+..+|.++|++..|.++|++...-++.+|-.. ...-+..|.+.+|+.
T Consensus 573 Lea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 577788888888888877653 3778889999999999999999999988876554443322 223456788888888
Q ss_pred HHHHHHhC------CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh
Q 008097 169 LLEKSFSF------GFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ 211 (577)
Q Consensus 169 ~~~~m~~~------g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 211 (577)
.+...... +..--..++..+...+...|-...|..+++..++.
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 77665432 11222344444444444445444444444444333
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.92 E-value=9.4e-07 Score=75.35 Aligned_cols=193 Identities=14% Similarity=0.045 Sum_probs=122.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhh
Q 008097 275 DTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCV 353 (577)
Q Consensus 275 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~ 353 (577)
.-+.-.|...|+...|..-+++..+.++. +..+|..+...|.+.|+.+.|.+.|++..+..|+. ...|.....+|.
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs---~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPS---YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 33455566667777777666666665322 44556666666666677777776666666665543 445556666667
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 008097 354 DGNVEDAKRCFDQMIEE-GGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTAL 431 (577)
Q Consensus 354 ~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~ 431 (577)
.|.+++|...|++.... ...--..+|..+.-+-.+.|+.+.|.+.|++..+. .| ...+...+.......|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHH
Confidence 77777777777777664 11112356777777777777777777777777764 23 3345666677777777777777
Q ss_pred HHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 432 KLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 432 ~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
.+++ ... .+..++.++.-..|..--+.|+-+.|.+.=..+.
T Consensus 194 ~~~~-~~~---~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 194 LYLE-RYQ---QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHH-HHH---hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 7777 443 2223677777777777777777776666555554
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.89 E-value=1.2e-06 Score=74.69 Aligned_cols=194 Identities=11% Similarity=-0.036 Sum_probs=155.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL 318 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 318 (577)
..-|.-+|...|++..|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|+......++ +-.+.|....-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~---~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN---NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC---ccchhhhhhHHH
Confidence 4456678899999999999999988773 445678888888999999999999999998876444 667788888888
Q ss_pred HhcCCHHHHHHHHHHHhhc---CCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 008097 319 YRENQQDEALEYLKQMEKL---FPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREA 395 (577)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 395 (577)
|..|++++|...|++.... ..-..+|..+.....+.|+.+.|...|++.++... -...+.-.+.......|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHH
Confidence 9999999999999998773 22345677777777889999999999999988632 2355677788888899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 396 SELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 396 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
..+++.....+. ++..+....++.-.+.|+.+.+-++=. .+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~-qL~ 234 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQA-QLQ 234 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHH-HHH
Confidence 999999887664 888888888888889999988877765 444
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.89 E-value=1.9e-05 Score=71.37 Aligned_cols=184 Identities=11% Similarity=0.099 Sum_probs=76.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHH
Q 008097 246 YCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQD 325 (577)
Q Consensus 246 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 325 (577)
+...|+...|+.....+++.. +.|...+..-..+|...|++..|+.-++...+.. ..+....-.+-..+...|+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs---~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS---QDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc---ccchHHHHHHHHHHHhhhhHH
Confidence 344444444554444444331 2344444444444445555555544444433321 112333333334444445555
Q ss_pred HHHHHHHHHhhcCCCceehHHH-------------HHHhhhcCCHHHHHHHHHHHHHcCCCCCHhh---HHHHHHHHHhc
Q 008097 326 EALEYLKQMEKLFPRAVDRSLK-------------ILGFCVDGNVEDAKRCFDQMIEEGGVPNVVI---YDCLIHAYCQE 389 (577)
Q Consensus 326 ~A~~~~~~~~~~~p~~~~~~~l-------------~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~li~~~~~~ 389 (577)
.++...++-.+..|+....... +......+++.++.+..+...+....-..+. +..+-.+|...
T Consensus 241 ~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 241 NSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 5544444444444443221110 0112233444444444444444321111111 22233344444
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 390 ERVREASELMKEMTGHGYLPI-ASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 390 g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
|++.+|++.-.+..+ +.|| ..++.--..+|.-...++.|+.-|+
T Consensus 321 ~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye 365 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYE 365 (504)
T ss_pred CCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 555555555555544 3343 3344444445555555555555555
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.89 E-value=4.8e-06 Score=81.65 Aligned_cols=94 Identities=15% Similarity=0.134 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCce-----ehHHH
Q 008097 273 TYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAV-----DRSLK 347 (577)
Q Consensus 273 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~l 347 (577)
....+...+...|++++|.+.++...+..+. +...+..+...+...|++++|..++++.....|... .|..+
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~---~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPD---DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 3344455666677777777777777665222 445566666677777777777777777666443211 12345
Q ss_pred HHHhhhcCCHHHHHHHHHHHHH
Q 008097 348 ILGFCVDGNVEDAKRCFDQMIE 369 (577)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~ 369 (577)
...+...|++++|..+|++...
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHhc
Confidence 5566677777777777776643
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.83 E-value=2.9e-07 Score=85.54 Aligned_cols=246 Identities=15% Similarity=0.121 Sum_probs=134.1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChh
Q 008097 158 CKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVD 237 (577)
Q Consensus 158 ~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 237 (577)
.-.|++..++.-.+ ........+......+.+++...|+.+.+.. ++... -.|...
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~----------------------ei~~~-~~~~l~ 67 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS----------------------EIKKS-SSPELQ 67 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH----------------------HS-TT-SSCCCH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH----------------------HhccC-CChhHH
Confidence 34566666665444 2111111223344455566666666554322 22222 244544
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHH
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGIS-WNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLY 316 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 316 (577)
....+...+...++-+.++.-+++....... .+..........+...|++++|.+++... .+.......+.
T Consensus 68 av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--------~~lE~~al~Vq 139 (290)
T PF04733_consen 68 AVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--------GSLELLALAVQ 139 (290)
T ss_dssp HHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--------TCHHHHHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--------CcccHHHHHHH
Confidence 4444433333334445555555444433322 23333333334566678888887766532 14445556677
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHH----hhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 008097 317 GLYRENQQDEALEYLKQMEKLFPRAVDRSLKILG----FCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERV 392 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 392 (577)
.|.+.++++.|.+.++.|.+...|... ..+..+ +.-.+.+.+|..+|+++... ..+++.+.|.+..++...|++
T Consensus 140 i~L~~~R~dlA~k~l~~~~~~~eD~~l-~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~ 217 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQIDEDSIL-TQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHY 217 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHCCSCCHHH-HHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-H
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCcHHH-HHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCH
Confidence 777888888888888777776544332 222222 22234678888888887654 556777888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHhhc
Q 008097 393 REASELMKEMTGHGYLPIASTFNTVLSGLCRQGNV-GTALKLVEEDMR 439 (577)
Q Consensus 393 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~m~ 439 (577)
++|.+++.+....+ +-|..|+..++....+.|+. +.+.+++. .++
T Consensus 218 ~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~-qL~ 263 (290)
T PF04733_consen 218 EEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS-QLK 263 (290)
T ss_dssp HHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH-HCH
T ss_pred HHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH-HHH
Confidence 88888888876543 22555666777777777777 55667777 555
No 91
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.80 E-value=2.1e-05 Score=78.00 Aligned_cols=167 Identities=14% Similarity=0.104 Sum_probs=83.3
Q ss_pred HHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhc
Q 008097 16 TVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLT 94 (577)
Q Consensus 16 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 94 (577)
+.|+.|.+.|.+..|.+....-.. ...+......+..++.+. -++.|-++|+ .+.. +...+.+|.+-
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfe-ki~d---------~dkale~fkkg 687 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFE-KIHD---------FDKALECFKKG 687 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHH-HhhC---------HHHHHHHHHcc
Confidence 456677777777666654322211 234666667777777777 7777777777 3321 22334444444
Q ss_pred CCHhHHHHHHHHHHhCCCCCCcchH-HHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHH
Q 008097 95 NRVGDGFKLLHVMKSRGVKPNSVIY-NTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKS 173 (577)
Q Consensus 95 ~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 173 (577)
.-+.+|.++-+.. ++..++.. ......+...|+++.|..-|-+.. ..-..|.+......|.+|+.+++.+
T Consensus 688 daf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildni 758 (1636)
T KOG3616|consen 688 DAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNI 758 (1636)
T ss_pred cHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHh
Confidence 4444554443322 11111111 112223334455555555443321 1111233444556666666666666
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 008097 174 FSFGFVPDVVTITKVLELLCSVGRVMDAVEIL 205 (577)
Q Consensus 174 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 205 (577)
..... -..-|..+..-|+..|+++.|.++|
T Consensus 759 qdqk~--~s~yy~~iadhyan~~dfe~ae~lf 788 (1636)
T KOG3616|consen 759 QDQKT--ASGYYGEIADHYANKGDFEIAEELF 788 (1636)
T ss_pred hhhcc--ccccchHHHHHhccchhHHHHHHHH
Confidence 54322 1233455556666666666666665
No 92
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=0.00053 Score=70.90 Aligned_cols=346 Identities=13% Similarity=0.157 Sum_probs=239.7
Q ss_pred HHHHHHHhCCCC--CCcchHHHHHHHHHhcCCHhHHHHHHHhcc-CCCcee-----HHHHHHHHHhcCChHHHHHHHHHH
Q 008097 102 KLLHVMKSRGVK--PNSVIYNTLIHSLCKNGKVGRARSLMSDME-EPNDVT-----FSILICAYCKEENLVNALVLLEKS 173 (577)
Q Consensus 102 ~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~-----~~~li~~~~~~~~~~~A~~~~~~m 173 (577)
++.++.++.+++ .|+.-.+..+.++...+-..+-.++++++. ++++.+ -|.||-...+ -+...+.+..+++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rL 1046 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHh
Confidence 344555554432 245556677888888888888888888876 333332 3334433333 3445566666665
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh--------hhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 008097 174 FSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ--------GRLGKVKGGCRFLKEMERKGCLPNVDTYNILISS 245 (577)
Q Consensus 174 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 245 (577)
-... .|+ +...+...+-+++|..+|+..-.. ..-++++.|.+.-+... ....|+.+..+
T Consensus 1047 dnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n------~p~vWsqlakA 1113 (1666)
T KOG0985|consen 1047 DNYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCN------EPAVWSQLAKA 1113 (1666)
T ss_pred ccCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhC------ChHHHHHHHHH
Confidence 4332 222 334455566667777776653222 23345555544433332 45689999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHH
Q 008097 246 YCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQD 325 (577)
Q Consensus 246 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 325 (577)
-.+.|...+|++-|-+. -|+..|.-+++...+.|.+++-.+.+....+. ...| ..-+.|+-+|++.++..
T Consensus 1114 QL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk--~~E~--~id~eLi~AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1114 QLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK--VREP--YIDSELIFAYAKTNRLT 1183 (1666)
T ss_pred HHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--hcCc--cchHHHHHHHHHhchHH
Confidence 99999999998887554 36778999999999999999999988877765 3333 34568899999999987
Q ss_pred HHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008097 326 EALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGH 405 (577)
Q Consensus 326 ~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 405 (577)
+-.++. ..|+......+.+-|...|.++.|.-+|..+ .-|..+...+...|+++.|.+.-++..
T Consensus 1184 elE~fi-----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAn-- 1247 (1666)
T KOG0985|consen 1184 ELEEFI-----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKAN-- 1247 (1666)
T ss_pred HHHHHh-----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhcc--
Confidence 765544 3677777788888899999999998888655 357888888899999999888766543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CH
Q 008097 406 GYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILP-DY 484 (577)
Q Consensus 406 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~ 484 (577)
+..||.-+-.+|...+.+.-| .|. ...+.....-..-++.-|...|-++|-..+++.-. |++- -.
T Consensus 1248 ----s~ktWK~VcfaCvd~~EFrlA------QiC--GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHM 1313 (1666)
T KOG0985|consen 1248 ----STKTWKEVCFACVDKEEFRLA------QIC--GLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHM 1313 (1666)
T ss_pred ----chhHHHHHHHHHhchhhhhHH------Hhc--CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHH
Confidence 456999999999887776655 444 44455566678889999999999999999998877 5543 34
Q ss_pred HHHHHHHHHHHhcchHH
Q 008097 485 LTWNSLLICLSQQTTWL 501 (577)
Q Consensus 485 ~~~~~ll~~~~~~~~~~ 501 (577)
..|+.|---|++..-.+
T Consensus 1314 gmfTELaiLYskykp~k 1330 (1666)
T KOG0985|consen 1314 GMFTELAILYSKYKPEK 1330 (1666)
T ss_pred HHHHHHHHHHHhcCHHH
Confidence 56777777777666544
No 93
>PF12854 PPR_1: PPR repeat
Probab=98.73 E-value=1.5e-08 Score=59.62 Aligned_cols=32 Identities=53% Similarity=0.892 Sum_probs=21.9
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008097 371 GGVPNVVIYDCLIHAYCQEERVREASELMKEM 402 (577)
Q Consensus 371 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (577)
|+.||..|||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666677777777777777777777666666
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.72 E-value=7.9e-05 Score=82.97 Aligned_cols=370 Identities=14% Similarity=0.049 Sum_probs=208.3
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHH----HHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHH
Q 008097 13 IFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILD----VLVKE-DIDLARAFYRKKMMASGVQGDDYTYAIL 87 (577)
Q Consensus 13 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~----~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~l 87 (577)
.+......+...|++.+|....... ++......++. .+... ++..+...+. .+.......+.......
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a------~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~-~lp~~~~~~~~~l~~~~ 415 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAA------GDAQLLRDILLQHGWSLFNQGELSLLEECLN-ALPWEVLLENPRLVLLQ 415 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHC------CCHHHHHHHHHHhHHHHHhcCChHHHHHHHH-hCCHHHHhcCcchHHHH
Confidence 3445556666777777766655444 12222222222 12223 5555555555 33211111122222333
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCC------CC--cchHHHHHHHHHhcCCHhHHHHHHHhccC--C--Cc----eeHH
Q 008097 88 MKGLCLTNRVGDGFKLLHVMKSRGVK------PN--SVIYNTLIHSLCKNGKVGRARSLMSDMEE--P--ND----VTFS 151 (577)
Q Consensus 88 l~~~~~~~~~~~a~~~~~~~~~~g~~------~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~--~~----~~~~ 151 (577)
...+...|+++++...+....+.--. +. ......+...+...|++++|...+++..+ + +. ..++
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 44455788999999988877543111 11 11122233456678999999999887543 2 21 2345
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC---CC--CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHH
Q 008097 152 ILICAYCKEENLVNALVLLEKSFSFGF---VP--DVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKE 226 (577)
Q Consensus 152 ~li~~~~~~~~~~~A~~~~~~m~~~g~---~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~ 226 (577)
.+...+...|++++|...+++.....- .+ ...++..+...+...|+++.|...+++.... ...
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~------------~~~ 563 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL------------IEE 563 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------------HHH
Confidence 555667789999999999888764311 11 1234455566778889999998887665432 211
Q ss_pred HHHcCCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCc--CHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 008097 227 MERKGCL--P-NVDTYNILISSYCETGVLDSALDVFNDMKIDG--ISW--NFVTYDTLIRGLCSGGRIDDGLKILQLMED 299 (577)
Q Consensus 227 ~~~~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 299 (577)
.+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+...|+.+.|.+.+.....
T Consensus 564 ---~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 564 ---QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred ---hccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2211 1 22334455566777899999999998875431 112 233444556677888999999999888754
Q ss_pred ccCCCCCCcccHH-----HHHHHHHhcCCHHHHHHHHHHHhhcCCCce-e----hHHHHHHhhhcCCHHHHHHHHHHHHH
Q 008097 300 SKEGSKGRISPYN-----SVLYGLYRENQQDEALEYLKQMEKLFPRAV-D----RSLKILGFCVDGNVEDAKRCFDQMIE 369 (577)
Q Consensus 300 ~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~p~~~-~----~~~l~~~~~~~g~~~~A~~~~~~~~~ 369 (577)
...... ....+. ..+..+...|+.+.|...+.......+... . +..+...+...|+.++|...+++...
T Consensus 641 ~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 641 LLGNGR-YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHhccc-ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 311111 111111 122344557888888888766544211111 0 22344556677777777777777655
Q ss_pred c----CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008097 370 E----GGVPN-VVIYDCLIHAYCQEERVREASELMKEMTGH 405 (577)
Q Consensus 370 ~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 405 (577)
. |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 720 ~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 720 NARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 22221 234555566677777777777777777654
No 95
>PF12854 PPR_1: PPR repeat
Probab=98.72 E-value=1.8e-08 Score=59.30 Aligned_cols=33 Identities=45% Similarity=0.844 Sum_probs=23.6
Q ss_pred CCCCCcchHHHHHHHHHhcCCHhHHHHHHHhcc
Q 008097 111 GVKPNSVIYNTLIHSLCKNGKVGRARSLMSDME 143 (577)
Q Consensus 111 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 143 (577)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 666777777777777777777777777777663
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.72 E-value=6.7e-05 Score=73.56 Aligned_cols=195 Identities=10% Similarity=0.029 Sum_probs=111.7
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCC-CCCHHHHHHH--HHHHHhcCHHHHHHHHHHHHhhcCCCCCHhhH
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNM-TPSLKIFNSI--LDVLVKEDIDLARAFYRKKMMASGVQGDDYTY 84 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l--i~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~~ 84 (577)
|-.+..|..+...+...|+.+.+.+.+....+..+ ..+......+ +..+...++++|.+.++ ...+.. +.|...+
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~-~~l~~~-P~~~~a~ 80 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLE-QLLDDY-PRDLLAL 80 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHC-CCcHHHH
Confidence 33456677777788788888887777777654322 2232222221 12222238888988888 444332 2233333
Q ss_pred HHHHHHHH----hcCCHhHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHH
Q 008097 85 AILMKGLC----LTNRVGDGFKLLHVMKSRGVKPN-SVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICA 156 (577)
Q Consensus 85 ~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 156 (577)
.. ...+. ..+....+.+.+... ....|+ ......+...+...|++++|...+++..+ .+...+..+...
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i 157 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHV 157 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 31 11222 234444555544431 111222 23334555677888888888888888764 334566777778
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC-CCH--hhHHHHHHHHHhcCCHhHHHHHHHH
Q 008097 157 YCKEENLVNALVLLEKSFSFGFV-PDV--VTITKVLELLCSVGRVMDAVEILEE 207 (577)
Q Consensus 157 ~~~~~~~~~A~~~~~~m~~~g~~-~~~--~~~~~ll~~~~~~g~~~~a~~~~~~ 207 (577)
+...|++++|...+++....... |+. ..|..+...+...|++++|..+++.
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888888888887654321 222 2344566667777777777766544
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=0.00026 Score=71.50 Aligned_cols=137 Identities=14% Similarity=0.101 Sum_probs=89.8
Q ss_pred HHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHH---------hhcCCCCCHhhHHHHHH
Q 008097 20 GLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKM---------MASGVQGDDYTYAILMK 89 (577)
Q Consensus 20 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m---------~~~~~~~~~~~~~~ll~ 89 (577)
.|...|+.+.|.+-...+ .+...|..|.+.+++. +++-|.-.+- .| ++.-..|+ .+=..+..
T Consensus 737 fyvtiG~MD~AfksI~~I------kS~~vW~nmA~McVkT~RLDVAkVClG-hm~~aRgaRAlR~a~q~~~-e~eakvAv 808 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFI------KSDSVWDNMASMCVKTRRLDVAKVCLG-HMKNARGARALRRAQQNGE-EDEAKVAV 808 (1416)
T ss_pred EEEEeccHHHHHHHHHHH------hhhHHHHHHHHHhhhhccccHHHHhhh-hhhhhhhHHHHHHHHhCCc-chhhHHHH
Confidence 466779999998887777 3567899999999887 6655544333 22 11112232 22222233
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC-CCceeHHHHHHHHHhcCChHHHHH
Q 008097 90 GLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE-PNDVTFSILICAYCKEENLVNALV 168 (577)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~ 168 (577)
.....|.+++|+.+|++..+. ..|=..|...|.+++|.++-+.-.. .=..||..-...+-..++.+.|++
T Consensus 809 LAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHH
Confidence 345789999999999998773 3455678888999999888655322 112355555566666788888888
Q ss_pred HHHHH
Q 008097 169 LLEKS 173 (577)
Q Consensus 169 ~~~~m 173 (577)
.|++.
T Consensus 880 yyEK~ 884 (1416)
T KOG3617|consen 880 YYEKA 884 (1416)
T ss_pred HHHhc
Confidence 87754
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.70 E-value=9.1e-07 Score=82.25 Aligned_cols=254 Identities=12% Similarity=0.046 Sum_probs=140.2
Q ss_pred HHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCH
Q 008097 19 RGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRV 97 (577)
Q Consensus 19 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 97 (577)
+-+.-.|++..++.-.+ .............-.+.+++... ++..++. .+.. +..|.......+...+....+-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~----ei~~-~~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS----EIKK-SSSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH----HS-T-TSSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH----Hhcc-CCChhHHHHHHHHHHHhCccch
Confidence 34455688888886666 32222222233344455566555 5554433 2222 2255555554444433333444
Q ss_pred hHHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 008097 98 GDGFKLLHVMKSRGVK-PNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSF 176 (577)
Q Consensus 98 ~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 176 (577)
+.+..-+.+....... .+..+......+|...|++++|++++++. .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4444444444333322 22233333345567788899888888765 45566667778888889999998888888764
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHH
Q 008097 177 GFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSAL 256 (577)
Q Consensus 177 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 256 (577)
+ +..+...+..++...- .....+.+|..+|+++.+. ..+++.+.|.+..++...|++++|.
T Consensus 161 ~---eD~~l~qLa~awv~l~---------------~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe 221 (290)
T PF04733_consen 161 D---EDSILTQLAEAWVNLA---------------TGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAE 221 (290)
T ss_dssp S---CCHHHHHHHHHHHHHH---------------HTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred C---CcHHHHHHHHHHHHHH---------------hCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3 3345555555554310 0012345555556665443 4456667777777777778888888
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHcCCCh-HHHHHHHHHHHhc
Q 008097 257 DVFNDMKIDGISWNFVTYDTLIRGLCSGGRI-DDGLKILQLMEDS 300 (577)
Q Consensus 257 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~ 300 (577)
+++.+..... +-|..++..++......|+. +.+.+.+.++...
T Consensus 222 ~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 222 ELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 7777766543 33556666677666666766 5566677766654
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=3.9e-06 Score=81.12 Aligned_cols=247 Identities=14% Similarity=0.122 Sum_probs=185.9
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHH
Q 008097 246 YCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQD 325 (577)
Q Consensus 246 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 325 (577)
+.+.|++.+|.-.|+...+.. +-+...|.-|.......++-..|+..+.+..+.+++ +....-.|.-.|...|.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~---NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT---NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc---cHHHHHHHHHHHhhhhhHH
Confidence 567899999999999888763 446788888888888899999999999999887444 6677778888899999999
Q ss_pred HHHHHHHHHhhcCCCceehHH--------HHHHhhhcCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCCHHHHH
Q 008097 326 EALEYLKQMEKLFPRAVDRSL--------KILGFCVDGNVEDAKRCFDQMIEE-GGVPNVVIYDCLIHAYCQEERVREAS 396 (577)
Q Consensus 326 ~A~~~~~~~~~~~p~~~~~~~--------l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~ 396 (577)
+|+..++......|....... .-..+.....+....++|-++... +..+|+.....|.-.|--.|.+++|+
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 999999988654321110000 001222233345556666666554 44478888999999999999999999
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC-cccHHHHHHHHHHcCChhHHHHHHHH
Q 008097 397 ELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG-SGHYSPLIKALCEKGGFQSASMLLVQ 474 (577)
Q Consensus 397 ~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 474 (577)
+.|+..+. ++| |..+||-|.-.++...+.++|+..|++.+. +.|+ +.....|.-.|...|.++||.+.|-+
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq-----LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ-----LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh-----cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999997 567 566799999999999999999999997777 7884 45666677889999999999998877
Q ss_pred HHH---CC------CCCCHHHHHHHHHHHHhcchHHHH
Q 008097 475 MVG---KG------ILPDYLTWNSLLICLSQQTTWLLL 503 (577)
Q Consensus 475 m~~---~~------~~p~~~~~~~ll~~~~~~~~~~~~ 503 (577)
.+. .+ -.++..+|.+|=.+++..+..+++
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 653 21 112346898888887777776643
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=9.6e-05 Score=65.65 Aligned_cols=312 Identities=15% Similarity=0.124 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHH-HH
Q 008097 11 ESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAI-LM 88 (577)
Q Consensus 11 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~-ll 88 (577)
..-+++.+..+.+..++.+|++++..-.+..+ ++......+-.+|... ++..|-..|+ .+... .|...-|.. -.
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYe-QL~ql--~P~~~qYrlY~A 85 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYE-QLGQL--HPELEQYRLYQA 85 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh--ChHHHHHHHHHH
Confidence 34467788888899999999999998877542 3666677777777777 9999999999 55442 344333321 23
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHH--HHhcCCHhHHHHHHHhcc-CCCceeHHHHHHHHHhcCChHH
Q 008097 89 KGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHS--LCKNGKVGRARSLMSDME-EPNDVTFSILICAYCKEENLVN 165 (577)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~ 165 (577)
+.+.+.+.+..|+++...|... |+...-..-+.+ ....+++..++.+.++.+ +.+..+.+-..-...+.|++++
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHH
Confidence 4566788999999999888653 222222112222 335688999999999998 4666666666566678999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCC---------h
Q 008097 166 ALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPN---------V 236 (577)
Q Consensus 166 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~---------~ 236 (577)
|++-|......+---....|+..+ +..+.|+...|++...+++.+.-....+-....-.+.......-| +
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999987765444456776555 445678888888887777665211111111100000000000001 1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKID-GISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVL 315 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 315 (577)
..+|.-...+.+.|+++.|.+-+..|.-. .-..|++|+..+.-+-. .+++.+..+-+.-+...+| . ...|+..++
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-f--P~ETFANlL 317 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-F--PPETFANLL 317 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-C--ChHHHHHHH
Confidence 12333333455678888888888877532 23456777765543322 3455555555555555432 2 345677777
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 008097 316 YGLYRENQQDEALEYLKQM 334 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~ 334 (577)
-.|+++.-++-|-.++.+-
T Consensus 318 llyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHhhhHHHhHHHHHHhhC
Confidence 8888888887777776543
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.68 E-value=2.5e-06 Score=78.04 Aligned_cols=185 Identities=9% Similarity=0.026 Sum_probs=120.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC-H---HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCccc
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWN-F---VTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISP 310 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 310 (577)
....+..+...+...|++++|...|+++... .|+ . .++..+..++.+.|++++|...++.+.+..++.+.-...
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4556777778888999999999999988765 232 2 456777888899999999999999998764432211124
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 008097 311 YNSVLYGLYRE--------NQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCL 382 (577)
Q Consensus 311 ~~~li~~~~~~--------g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 382 (577)
+..+..++.+. |+.++|.+.|+.+....|+......... ....+... -......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~-------------~~~~~~~~----~~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK-------------RMDYLRNR----LAGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH-------------HHHHHHHH----HHHHHHHH
Confidence 55555555544 6788888888888877776532211110 00000000 00111245
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 383 IHAYCQEERVREASELMKEMTGHGY-LP-IASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
...|.+.|++++|+..+++..+..- .| ....+..+..++.+.|+.++|..+++ .+.
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~-~l~ 230 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA-VLG 230 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH-HHH
Confidence 5677888888888888888876421 12 24567788888888888888888887 554
No 102
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.67 E-value=0.00047 Score=66.54 Aligned_cols=416 Identities=11% Similarity=0.067 Sum_probs=224.3
Q ss_pred CCHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHH
Q 008097 44 PSLKIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLI 123 (577)
Q Consensus 44 ~~~~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 123 (577)
-|+.+|+.||+-+-...++++++.++ .+... .+-....|..-|..-.+.++++..+++|.+.+..- .+...|...+
T Consensus 18 ~di~sw~~lire~qt~~~~~~R~~YE-q~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQPIDKVRETYE-QLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccCCHHHHHHHHH-HHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 48999999999876669999999999 44431 23346678888999999999999999999998764 3566777777
Q ss_pred HHHHh--cCCHhHHHHH----HHhcc------CCCceeHHHHHHH---------HHhcCChHHHHHHHHHHHhCCCCCCH
Q 008097 124 HSLCK--NGKVGRARSL----MSDME------EPNDVTFSILICA---------YCKEENLVNALVLLEKSFSFGFVPDV 182 (577)
Q Consensus 124 ~~~~~--~g~~~~A~~~----~~~~~------~~~~~~~~~li~~---------~~~~~~~~~A~~~~~~m~~~g~~~~~ 182 (577)
+ |.+ .|+...++.. |+-.. -.+-..|+..+.. |..+.+.+...++|.++....+.-=.
T Consensus 94 ~-YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 94 S-YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred H-HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 6 443 2444332222 22211 1233446665543 44555677778888888743221111
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHH--cCCCCChhh---------------HHHHHHH
Q 008097 183 VTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMER--KGCLPNVDT---------------YNILISS 245 (577)
Q Consensus 183 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~--~~~~p~~~~---------------~~~li~~ 245 (577)
..|+-.. ++-+.=+.-.|+++.. .+...+..|+++++++.. +|...+..+ |-.+|.-
T Consensus 173 kLW~DY~-~fE~~IN~~tarK~i~-----e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 173 KLWKDYE-AFEQEINIITARKFIG-----ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHH-----hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 1111110 0000001111111111 233345556666666543 333322222 4444432
Q ss_pred HHhcCCh--------hHHHHHHHHH-HHCCCCcCHHHHH-H----HHHHHHcCCC-------hHHHHHHHHHHHhccCCC
Q 008097 246 YCETGVL--------DSALDVFNDM-KIDGISWNFVTYD-T----LIRGLCSGGR-------IDDGLKILQLMEDSKEGS 304 (577)
Q Consensus 246 ~~~~g~~--------~~A~~~~~~m-~~~g~~~~~~~~~-~----ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~ 304 (577)
=-.++-- ....-.+++. .-.+..|+..-.. . .-+.+...|+ -+++..+++..... ..
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~--l~ 324 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG--LL 324 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH--HH
Confidence 2111110 1111222221 1223333332111 1 1122333343 34555555555443 11
Q ss_pred CCCcccHHHHHHHHH---hcCCHHHHHHHHHHHhhcC--CCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCC-CHhh
Q 008097 305 KGRISPYNSVLYGLY---RENQQDEALEYLKQMEKLF--PRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVP-NVVI 378 (577)
Q Consensus 305 ~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~ 378 (577)
.-+..+|..+.+--- +.+..+.....++++.... .-...|..++..-.+..-++.|..+|.+..+.+..+ ++..
T Consensus 325 ~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfV 404 (656)
T KOG1914|consen 325 KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFV 404 (656)
T ss_pred HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhH
Confidence 112222222221111 1112445555666655432 123445666666667777888888888888776666 6677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC--CcccHHHHH
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP--GSGHYSPLI 456 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p--~~~~~~~li 456 (577)
+++++.-||. ++..-|.++|+--.+. +.-++.--...++-+.+.++-..+..+|++.+. .++.| ....|..++
T Consensus 405 a~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~---s~l~~~ks~~Iw~r~l 479 (656)
T KOG1914|consen 405 AAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLT---SVLSADKSKEIWDRML 479 (656)
T ss_pred HHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh---ccCChhhhHHHHHHHH
Confidence 7777776664 6667788888765432 122333445566667778888888888884444 24444 457788888
Q ss_pred HHHHHcCChhHHHHHHHHHHH
Q 008097 457 KALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~m~~ 477 (577)
+--..-|++..+.++-+++..
T Consensus 480 ~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 480 EYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhcccHHHHHHHHHHHHH
Confidence 888888888888888777764
No 103
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.65 E-value=0.00032 Score=63.67 Aligned_cols=362 Identities=14% Similarity=0.102 Sum_probs=223.6
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHH---HHHHHhcCCHhHHHHHHHhccCCCceeHHHHH---HHHHhc
Q 008097 87 LMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTL---IHSLCKNGKVGRARSLMSDMEEPNDVTFSILI---CAYCKE 160 (577)
Q Consensus 87 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~ 160 (577)
+-+.+...|++..|+.-|...++. |+..|.++ ...|...|+...|+.=|++..+.-+..+.+-| ..+.+.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence 344444556666666666555542 22333332 23455556666665555555542222222222 345677
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHH
Q 008097 161 ENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYN 240 (577)
Q Consensus 161 ~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 240 (577)
|.+++|..-|+..+... |+. .....+..+.-..++-..+..++......|+...|......+.+-.+ -|...+.
T Consensus 120 Gele~A~~DF~~vl~~~--~s~---~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~ 193 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHE--PSN---GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQ 193 (504)
T ss_pred ccHHHHHHHHHHHHhcC--CCc---chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHH
Confidence 77777777777776543 221 12234444444445555555555555667777777777887777532 2666777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH------
Q 008097 241 ILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV------ 314 (577)
Q Consensus 241 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l------ 314 (577)
.-..+|...|++..|+.-++...+.. .-|..++.-+-..+...|+.+.+....++..+.++..+.--..|..+
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHH
Confidence 77889999999999998888776553 33566666677778889999999999888887654433322333322
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHhhcCCCce--eh---HHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHH
Q 008097 315 ---LYGLYRENQQDEALEYLKQMEKLFPRAV--DR---SLKILGFCVDGNVEDAKRCFDQMIEEGGVPN-VVIYDCLIHA 385 (577)
Q Consensus 315 ---i~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~ 385 (577)
+......++|.++++-.+...+..|... .+ ..+-..|...|++.+|++...+++.. .|| +.++.--..+
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHH
Confidence 1234556788888888888888777632 22 33445667889999999999999884 455 8888888899
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCCh
Q 008097 386 YCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGF 465 (577)
Q Consensus 386 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~ 465 (577)
|.-...++.|+.-|+...+.+ ++..-.. . -.+.|.++.. ... ...-|-.| +--|.-.-
T Consensus 351 ~l~dE~YD~AI~dye~A~e~n--~sn~~~r--------e-Gle~Akrlkk-qs~--------kRDYYKIL--GVkRnAsK 408 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALELN--ESNTRAR--------E-GLERAKRLKK-QSG--------KRDYYKIL--GVKRNASK 408 (504)
T ss_pred HhhhHHHHHHHHHHHHHHhcC--cccHHHH--------H-HHHHHHHHHH-Hhc--------cchHHHHh--hhcccccH
Confidence 999999999999999998853 4432211 1 1344555544 222 11112211 12233345
Q ss_pred hHHHHHHHHHHHCCCCCCH
Q 008097 466 QSASMLLVQMVGKGILPDY 484 (577)
Q Consensus 466 ~~A~~~~~~m~~~~~~p~~ 484 (577)
.|..+.+++|-.+ +.||.
T Consensus 409 qEI~KAYRKlAqk-WHPDN 426 (504)
T KOG0624|consen 409 QEITKAYRKLAQK-WHPDN 426 (504)
T ss_pred HHHHHHHHHHHHh-cCCcc
Confidence 6666777777654 77876
No 104
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.65 E-value=1.7e-05 Score=84.14 Aligned_cols=230 Identities=10% Similarity=0.042 Sum_probs=181.1
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC--CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehH
Q 008097 268 SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE--GSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRS 345 (577)
Q Consensus 268 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 345 (577)
+-+...|-..|....+.+++++|+++++++...=. ...--...|.++++.-..-|.-+...++|+++.+.-.....|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 44556788888888889999999999988875300 0001234688888888888888889999999988655566788
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHH-HHHHHHHH
Q 008097 346 LKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPI--ASTF-NTVLSGLC 422 (577)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~-~~ll~~~~ 422 (577)
.|...|.+.+..++|.++++.|.++ +.-....|...+..+.++.+-++|..++.+..+. -|- ++-+ .-.+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 8899999999999999999999987 3357789999999999999999999999998874 354 3333 23344457
Q ss_pred hcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcch
Q 008097 423 RQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDY--LTWNSLLICLSQQTT 499 (577)
Q Consensus 423 ~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~ 499 (577)
+.|+.+.++.+|+..+. -.| ....|+..++.-.++|..+.+..+|++....++.|-- ..|.-.|.--..+|+
T Consensus 1612 k~GDaeRGRtlfEgll~-----ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLS-----AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred hcCCchhhHHHHHHHHh-----hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 89999999999994444 234 7789999999999999999999999999998888764 567777777777887
Q ss_pred HHHHHH
Q 008097 500 WLLLLL 505 (577)
Q Consensus 500 ~~~~~~ 505 (577)
.+-.+.
T Consensus 1687 e~~vE~ 1692 (1710)
T KOG1070|consen 1687 EKNVEY 1692 (1710)
T ss_pred hhhHHH
Confidence 665443
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.62 E-value=1.7e-05 Score=84.21 Aligned_cols=228 Identities=14% Similarity=0.097 Sum_probs=174.2
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 008097 181 DVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFN 260 (577)
Q Consensus 181 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 260 (577)
+...|...|.-..+.++.+.|+++.++++.... |++=.+ -...|.++++.-...|.-+...++|+
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN----------~REeeE-----KLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTIN----------FREEEE-----KLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCC----------cchhHH-----HHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 356777777777788888888888766544311 000001 23468888888888888889999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 008097 261 DMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 261 ~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
++.+. .-....|..|...|.+.+.+++|.++++.|.+. .......|...+..+.++++-+.|..++.++.+..|.
T Consensus 1522 RAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK---F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1522 RACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK---FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH---hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 99875 223456888999999999999999999999986 2246678999999999999999999999999987776
Q ss_pred ce---ehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHH
Q 008097 341 AV---DRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAS--TFN 415 (577)
Q Consensus 341 ~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~ 415 (577)
.. .....+..-.++|+.+.+..+|+..... .+.-...|+..|+.-.++|+.+.+..+|++.+..++.|-.. .|.
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 22 2334455667999999999999999886 44567899999999999999999999999999988887432 455
Q ss_pred HHHHHHHhcCCHHH
Q 008097 416 TVLSGLCRQGNVGT 429 (577)
Q Consensus 416 ~ll~~~~~~g~~~~ 429 (577)
-.+..=...|+-+.
T Consensus 1676 kwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1676 KWLEYEKSHGDEKN 1689 (1710)
T ss_pred HHHHHHHhcCchhh
Confidence 55544444555433
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.62 E-value=0.0001 Score=82.13 Aligned_cols=265 Identities=11% Similarity=0.035 Sum_probs=158.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CcCHHHHHHHHHHHHcC
Q 008097 214 LGKVKGGCRFLKEMERKGCLPN----VDTYNILISSYCETGVLDSALDVFNDMKID----GI-SWNFVTYDTLIRGLCSG 284 (577)
Q Consensus 214 ~g~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~ll~~~~~~ 284 (577)
.|++++|...+++....-...+ ....+.+...+...|++++|...+.+.... |- .+-..++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 4555555555555544211111 123455566677889999999988887642 11 11123445566677888
Q ss_pred CChHHHHHHHHHHHhccC--CCCC---CcccHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC--ceehHHHHHHhhh
Q 008097 285 GRIDDGLKILQLMEDSKE--GSKG---RISPYNSVLYGLYRENQQDEALEYLKQMEKL----FPR--AVDRSLKILGFCV 353 (577)
Q Consensus 285 g~~~~a~~~~~~~~~~~~--~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~p~--~~~~~~l~~~~~~ 353 (577)
|+++.|...+++...... +... ....+..+...+...|++++|...+.+.... .+. ...+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999988877654311 1110 1122334555667789999999888887553 111 1122334456778
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHhhH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhc
Q 008097 354 DGNVEDAKRCFDQMIEEGGV-PNVVIY-----DCLIHAYCQEERVREASELMKEMTGHGYLPIA---STFNTVLSGLCRQ 424 (577)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~~-p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~ 424 (577)
.|+.+.|...+++....... .....+ ...+..+...|+.+.|.+++............ ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 89999999988887553111 111111 11224455678889998888776542211111 1134566678889
Q ss_pred CCHHHHHHHHHHhhccc-CCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 008097 425 GNVGTALKLVEEDMRGI-GRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGK 478 (577)
Q Consensus 425 g~~~~a~~~~~~~m~~~-~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 478 (577)
|+.++|...+++.+... ..+..+ ...++..+..++.+.|+.++|...+.+..+.
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999888544410 112222 2345667778888999999999999998865
No 107
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=8.5e-05 Score=71.51 Aligned_cols=104 Identities=7% Similarity=-0.056 Sum_probs=83.2
Q ss_pred HHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCC-HhhHHHHHHHHHhcC
Q 008097 18 IRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGD-DYTYAILMKGLCLTN 95 (577)
Q Consensus 18 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~ 95 (577)
-++....|+++.|+..|...+...+. |.+.|.--..+|++. ++.+|++=-. ....+.|+ +..|+-.-.++.-.|
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~---k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDAT---KTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHH---HHHhcCCchhhHHHHhHHHHHhcc
Confidence 45667889999999999999887654 888899889999998 9999887544 23335666 567888888888999
Q ss_pred CHhHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 008097 96 RVGDGFKLLHVMKSRGVKPNSVIYNTLIHSL 126 (577)
Q Consensus 96 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 126 (577)
++++|+.-|.+-++.. +.+...++.|..++
T Consensus 85 ~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred cHHHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 9999999999988864 33666777777777
No 108
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.56 E-value=0.0003 Score=72.70 Aligned_cols=439 Identities=10% Similarity=-0.028 Sum_probs=241.7
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 008097 26 MINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLL 104 (577)
Q Consensus 26 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 104 (577)
+...|+..|=+..+.++ --...|..|-..|..- +...|...|+ ...+-. ..|...+......|++..+++.|..+.
T Consensus 473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~-KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFD-KAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 35666666666655332 1245577777777776 8888888888 333322 235666778888899999999998883
Q ss_pred HHHHhCCC-CCCcchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 008097 105 HVMKSRGV-KPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVP 180 (577)
Q Consensus 105 ~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~ 180 (577)
-..-+... ..-..-|....-.|.+.++...|..-|+.... .|...|..+..+|.+.|++..|+++|.+... ++|
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP 627 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRP 627 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCc
Confidence 33322210 00111222244456777888888888888764 4677888999999999999999999988764 344
Q ss_pred CHhhHHH--HHHHHHhcCCHhHHHHHHHHHHHh---hhcCChhHHH--------------------------HHHHHHHH
Q 008097 181 DVVTITK--VLELLCSVGRVMDAVEILEESGEQ---GRLGKVKGGC--------------------------RFLKEMER 229 (577)
Q Consensus 181 ~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~---~~~g~~~~a~--------------------------~~~~~~~~ 229 (577)
+. +|.. .....+..|.+.+|...+..++.. .++++...|. +.|.-...
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 42 2222 233456788899888888877665 2222222222 22222211
Q ss_pred cCCCCChhhHHHHHHHHHhcCChh--H----HHHH-HHHHHHCCCCc--------------------CHHHHHHHHHHHH
Q 008097 230 KGCLPNVDTYNILISSYCETGVLD--S----ALDV-FNDMKIDGISW--------------------NFVTYDTLIRGLC 282 (577)
Q Consensus 230 ~~~~p~~~~~~~li~~~~~~g~~~--~----A~~~-~~~m~~~g~~~--------------------~~~~~~~ll~~~~ 282 (577)
....-+...|-.+-++|.-.-..+ . ...+ +.+....+.-| +..+|..+...|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 111112223333222221110000 0 0111 11111111111 1222333333222
Q ss_pred c----C----CChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CceehHHHHHHhhh
Q 008097 283 S----G----GRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFP-RAVDRSLKILGFCV 353 (577)
Q Consensus 283 ~----~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~ 353 (577)
+ + .+...|...+....+.... +...|+.|.-. ...|.+.-|...|-+.....| ...+|..+...+.+
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~an---n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLCAN---NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHhhc---cHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEe
Confidence 2 1 1223555555555443211 44556655544 444566666666655555444 34556666666778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH--H--hCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008097 354 DGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEM--T--GHGYLPIASTFNTVLSGLCRQGNVGT 429 (577)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~--~~g~~p~~~~~~~ll~~~~~~g~~~~ 429 (577)
..+++.|...|...+.. .+.|...|--....-...|+.-++..+|..- . ..|-.|+..-|..........|+.++
T Consensus 863 n~d~E~A~~af~~~qSL-dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSL-DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred cccHHHhhHHHHhhhhc-CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHH
Confidence 88888999999888875 2346677777766666778777777777651 1 23344555555444444455555444
Q ss_pred HHHHHHHhhc-------ccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 430 ALKLVEEDMR-------GIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 430 a~~~~~~~m~-------~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
-+.-.+ .+. ..-.+.+-....|.+....+-+.+.+++|.++..+..
T Consensus 942 ~I~t~~-ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 942 SINTAR-KISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHhh-hhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 332222 111 0001222355667777777777777777777666654
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.56 E-value=6.9e-06 Score=75.16 Aligned_cols=187 Identities=16% Similarity=0.126 Sum_probs=128.5
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCcee----hH
Q 008097 270 NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVD----RS 345 (577)
Q Consensus 270 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~ 345 (577)
....+..+...+.+.|++++|...|+.+....+..+.....+..+..++.+.|++++|...++++.+..|+... +.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 45566777778888999999999999888763332212245677888889999999999999999887775443 34
Q ss_pred HHHHHhhhc--------CCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008097 346 LKILGFCVD--------GNVEDAKRCFDQMIEEGGVPNV-VIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNT 416 (577)
Q Consensus 346 ~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 416 (577)
.+...+.+. |+.+.|.+.|+++... .|+. ..+..+..... .... .. .....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~------~~--------~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR------LA--------GKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH------HH--------HHHHH
Confidence 444445443 6788888888888774 3332 23322221110 0000 00 01124
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 008097 417 VLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGK 478 (577)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 478 (577)
+...+.+.|++++|...+++.+. ...-.| ....+..++.++...|++++|...++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVE--NYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH--HCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56678999999999999996555 333345 6789999999999999999999999998753
No 110
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=8.4e-06 Score=81.72 Aligned_cols=132 Identities=15% Similarity=0.137 Sum_probs=88.2
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 008097 308 ISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYC 387 (577)
Q Consensus 308 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 387 (577)
...|.--..-+-..|+.+.|+.++..+.. |..++...|-.|+.++|-++-++- .|....-.+.+.|-
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSAKD-------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYE 978 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHhhh-------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhh
Confidence 34455555555667888888888877654 566677777889999988887654 36666667889999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHhhcccCCCCCCCcccH
Q 008097 388 QEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQG---------------NVGTALKLVEEDMRGIGRGSLPGSGHY 452 (577)
Q Consensus 388 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---------------~~~~a~~~~~~~m~~~~~~~~p~~~~~ 452 (577)
..|++.+|..+|.+.+ +|...|+.|...+ +.-.|-++|+ ... . -.
T Consensus 979 n~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyE-e~g-----~-----~~ 1038 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYE-ELG-----G-----YA 1038 (1416)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHH-Hcc-----h-----hh
Confidence 9999999999998876 3333344333332 3334455555 211 1 23
Q ss_pred HHHHHHHHHcCChhHHHHHH
Q 008097 453 SPLIKALCEKGGFQSASMLL 472 (577)
Q Consensus 453 ~~li~~~~~~g~~~~A~~~~ 472 (577)
...+-.|-++|.+.+|+++-
T Consensus 1039 ~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 1039 HKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred hHHHHHHHhhcchHHHHHHH
Confidence 44567789999998888763
No 111
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=1.6e-05 Score=76.92 Aligned_cols=258 Identities=16% Similarity=0.108 Sum_probs=176.2
Q ss_pred HHHhcCCHhHHHHHHHhccCC---CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 008097 125 SLCKNGKVGRARSLMSDMEEP---NDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDA 201 (577)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 201 (577)
-+.+.|++.+|.-.|+..... +...|-.|......+++-..|+..+++.++.. +-|....-.|.-.|...|.-..|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 357889999999999988753 46689999999999999999999999988754 22466777778888888888888
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCcCHHHHHHHHHH
Q 008097 202 VEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKI-DGISWNFVTYDTLIRG 280 (577)
Q Consensus 202 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~ll~~ 280 (577)
...++.-+... +.... ....+ ++...-+. ..+.....+....++|-++.. .+..+|......|--.
T Consensus 373 l~~L~~Wi~~~----p~y~~-----l~~a~--~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 373 LKMLDKWIRNK----PKYVH-----LVSAG--ENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HHHHHHHHHhC----ccchh-----ccccC--ccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH
Confidence 88776644330 00000 00000 00000000 111222234455556655543 4434666777777777
Q ss_pred HHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHH
Q 008097 281 LCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVED 359 (577)
Q Consensus 281 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 359 (577)
|--.|++++|...|+.....+|. |...||.|...++...+.++|+..+.+..++.|.- ..+..|...|...|.+++
T Consensus 440 y~ls~efdraiDcf~~AL~v~Pn---d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykE 516 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVKPN---DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKE 516 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcCCc---hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHH
Confidence 88888888888888888876433 77888888888888888888988888888888875 456667778888888888
Q ss_pred HHHHHHHHHHcC---------CCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 008097 360 AKRCFDQMIEEG---------GVPNVVIYDCLIHAYCQEERVREASELM 399 (577)
Q Consensus 360 A~~~~~~~~~~~---------~~p~~~~~~~li~~~~~~g~~~~A~~~~ 399 (577)
|...|-..+... ..++...|..|=.++...++.|-+.+..
T Consensus 517 A~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 517 AVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 888887765531 1123457888888888888777555443
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=8.4e-06 Score=80.96 Aligned_cols=210 Identities=13% Similarity=0.082 Sum_probs=157.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVL 315 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 315 (577)
...|...|.+|+..|+..+|..+..+-.+. +||+..|..+.+......-+++|.++++....+ .-..+.
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar---------A~r~~~ 492 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR---------AQRSLA 492 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH---------HHHhhc
Confidence 345778899999999999999998888874 889999999999888888899999998876543 111122
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCC-CceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHH
Q 008097 316 YGLYRENQQDEALEYLKQMEKLFP-RAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEERVR 393 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 393 (577)
......++++++.+.|+...+..| ...+|..+..++.++++++.|.+.|...... .|| ...||.+-.+|.+.|+-.
T Consensus 493 ~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ 570 (777)
T KOG1128|consen 493 LLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKK 570 (777)
T ss_pred cccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhH
Confidence 223347899999999998888766 4567888888888999999999999998874 454 678999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHH
Q 008097 394 EASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCE 461 (577)
Q Consensus 394 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~ 461 (577)
+|...+.+..+.+.. +...|-..+-...+.|.+++|++.+. .+.. ......|..+...++....+
T Consensus 571 ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~-rll~-~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 571 RAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYH-RLLD-LRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHH-HHHH-hhhhcccchhhHHHHHHHHh
Confidence 999999999876633 33345555556678899999999998 4442 11122256666655555443
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.50 E-value=2.7e-05 Score=68.32 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=54.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHcCCC--hHHHHHHHHHHHhccCCCCCCcccH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRG-LCSGGR--IDDGLKILQLMEDSKEGSKGRISPY 311 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~ 311 (577)
|...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|+ .++|.+++++..+.++. +...+
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~---~~~al 147 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN---EVTAL 147 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC---ChhHH
Confidence 45556666666666666666666666655542 2244444444443 244444 35666666666554322 44455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 008097 312 NSVLYGLYRENQQDEALEYLKQMEKLFP 339 (577)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p 339 (577)
..+...+.+.|++++|...|+++.+..|
T Consensus 148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 148 MLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5555555555555555555555555433
No 114
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=3.6e-05 Score=68.25 Aligned_cols=320 Identities=15% Similarity=0.119 Sum_probs=183.0
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC--CCceeHHH
Q 008097 75 SGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--PNDVTFSI 152 (577)
Q Consensus 75 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 152 (577)
.|+....-.+.+++..+.+..++..|.+++..-.+... .+..-.+.|...|....++..|-..++++.. |...-|..
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 34444444567777777778888888888877766532 2566677777778888888888888887764 33333322
Q ss_pred -HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcC
Q 008097 153 -LICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKG 231 (577)
Q Consensus 153 -li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~ 231 (577)
-...+.+.+.+..|+.+...|... |+ ..+..+. ++.|.. ...+++..++.+.++....|
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~--L~~~~lq-------LqaAIk--------Yse~Dl~g~rsLveQlp~en 142 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PA--LHSRVLQ-------LQAAIK--------YSEGDLPGSRSLVEQLPSEN 142 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HH--HHHHHHH-------HHHHHh--------cccccCcchHHHHHhccCCC
Confidence 234555677777777777766431 11 1111111 111111 23455555555555555321
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcc-
Q 008097 232 CLPNVDTYNILISSYCETGVLDSALDVFNDMKID-GISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRIS- 309 (577)
Q Consensus 232 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~- 309 (577)
+..+.+.......+.|+++.|.+-|+...+- |.. ....|+..+.. .+.++.+.|.+...++.++ |++..+.
T Consensus 143 ---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniALaH-y~~~qyasALk~iSEIieR--G~r~HPEl 215 (459)
T KOG4340|consen 143 ---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAH-YSSRQYASALKHISEIIER--GIRQHPEL 215 (459)
T ss_pred ---ccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHH-HhhhhHHHHHHHHHHHHHh--hhhcCCcc
Confidence 3444444444556788899999888887764 444 34566655544 4568888888888888776 3321110
Q ss_pred ---cHHHHHHHHHhcCCH-HHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHH
Q 008097 310 ---PYNSVLYGLYRENQQ-DEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEE-GGVPNVVIYDCLIH 384 (577)
Q Consensus 310 ---~~~~li~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~ 384 (577)
.-+-.++.-. .|+. ..+..-+ ...++.-...+.+.|+.+.|.+.+..|.-+ ....|++|...+.-
T Consensus 216 gIGm~tegiDvrs-vgNt~~lh~Sal---------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al 285 (459)
T KOG4340|consen 216 GIGMTTEGIDVRS-VGNTLVLHQSAL---------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL 285 (459)
T ss_pred CccceeccCchhc-ccchHHHHHHHH---------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH
Confidence 0000000000 0000 0000000 011233334456778888888888877543 23356777665543
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 385 AYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
.= ..+++.+..+-++-+... .| ...||..++-.||+..-++-|-.++.
T Consensus 286 ~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 286 MN-MDARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred hc-ccCCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 22 244555555555555543 34 46799999999999999999988887
No 115
>PLN02789 farnesyltranstransferase
Probab=98.42 E-value=0.00015 Score=68.54 Aligned_cols=204 Identities=13% Similarity=0.073 Sum_probs=108.0
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcC
Q 008097 245 SYCETGVLDSALDVFNDMKIDGISW-NFVTYDTLIRGLCSGG-RIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYREN 322 (577)
Q Consensus 245 ~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 322 (577)
.+...++.++|+.+..++++. .| +..+|+.--.++...| +++++...++.+...++. +..+|+.....+.+.|
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk---nyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK---NYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc---chHHhHHHHHHHHHcC
Confidence 334455666666666666654 22 2233443333444445 456666666666654222 4444554444444444
Q ss_pred CH--HHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc---CC----H
Q 008097 323 QQ--DEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQE---ER----V 392 (577)
Q Consensus 323 ~~--~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~ 392 (577)
.. ++++.+++++.+..|. ...|+.....+.+.|+++++++.++++++.++ .|...|+.....+.+. |. .
T Consensus 121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccH
Confidence 42 4556666666665443 34555555555566667777777777766533 3555666555544433 22 2
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHH
Q 008097 393 REASELMKEMTGHGYLP-IASTFNTVLSGLCRQ----GNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCE 461 (577)
Q Consensus 393 ~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~ 461 (577)
++.++...+++.. .| |...|+.+...+... +...+|..++.+... ..| +......|++.|+.
T Consensus 200 e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~-----~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 200 DSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS-----KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc-----ccCCcHHHHHHHHHHHHh
Confidence 3556666666653 34 444566666555552 334556666663222 234 45556677777765
No 116
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.42 E-value=1.3e-05 Score=66.36 Aligned_cols=114 Identities=11% Similarity=-0.088 Sum_probs=83.0
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccc
Q 008097 362 RCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGI 441 (577)
Q Consensus 362 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~ 441 (577)
.+|++.++. .|+ .+......+...|++++|...|++..... +.+...+..+..+|...|++++|...|++.+.
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~-- 86 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM-- 86 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence 455666552 343 35566777788888888888888888643 23566778888888888888888888885555
Q ss_pred CCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 008097 442 GRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTW 487 (577)
Q Consensus 442 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 487 (577)
..| +...+..+..++.+.|++++|.+.+++..+ +.|+...|
T Consensus 87 ---l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~ 128 (144)
T PRK15359 87 ---LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASW 128 (144)
T ss_pred ---cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHH
Confidence 456 777888888888888888888888888874 55664333
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=3.8e-05 Score=76.47 Aligned_cols=220 Identities=14% Similarity=0.043 Sum_probs=134.0
Q ss_pred CCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 008097 113 KPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELL 192 (577)
Q Consensus 113 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 192 (577)
+|-...-..+...+...|-...|..+|++.. .|.-.|-+|+..|+..+|..+..+-.+ -+||+..|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 4444455677788888899999999998864 577788888888888888888877766 367788888887777
Q ss_pred HhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHH
Q 008097 193 CSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFV 272 (577)
Q Consensus 193 ~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 272 (577)
....-++.|.++.+..-.. .--.+.......++++++.+.|+.-.+.. +.-..
T Consensus 468 ~d~s~yEkawElsn~~sar--------------------------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~ 520 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR--------------------------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLG 520 (777)
T ss_pred cChHHHHHHHHHhhhhhHH--------------------------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchh
Confidence 6666667777665443111 00111111122566666666666554432 22345
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCceehHHHHHHh
Q 008097 273 TYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLF-PRAVDRSLKILGF 351 (577)
Q Consensus 273 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~ 351 (577)
+|-..-.+..+.++++.|.+.|.......++ +...||.+-.+|.+.++-.+|...+.+..+.. .+...|-..+..-
T Consensus 521 ~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd---~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvs 597 (777)
T KOG1128|consen 521 TWFGLGCAALQLEKEQAAVKAFHRCVTLEPD---NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVS 597 (777)
T ss_pred HHHhccHHHHHHhhhHHHHHHHHHHhhcCCC---chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhh
Confidence 5555555566666666666666665554222 44556666666666666666666666665532 2223333444444
Q ss_pred hhcCCHHHHHHHHHHHHH
Q 008097 352 CVDGNVEDAKRCFDQMIE 369 (577)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~ 369 (577)
.+.|.+++|.+.+.++..
T Consensus 598 vdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 598 VDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhcccHHHHHHHHHHHHH
Confidence 555666666666665554
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.38 E-value=0.00025 Score=74.87 Aligned_cols=90 Identities=11% Similarity=0.035 Sum_probs=72.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+...+-.+..+|-+.|+.++|..+++++.+.. +-|....+.+...|+.. ++++|.+++.+....
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------------- 178 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------------- 178 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------
Confidence 44567778888999999999999999998876 55788889999989888 999999988877654
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCcee
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRAVD 343 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 343 (577)
+...+++..+.+++.++....|+.+.
T Consensus 179 ---~i~~kq~~~~~e~W~k~~~~~~~d~d 204 (906)
T PRK14720 179 ---FIKKKQYVGIEEIWSKLVHYNSDDFD 204 (906)
T ss_pred ---HHhhhcchHHHHHHHHHHhcCcccch
Confidence 66677888888888888877665443
No 119
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=0.0011 Score=64.24 Aligned_cols=408 Identities=11% Similarity=0.019 Sum_probs=191.7
Q ss_pred CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhcCCHhHHHHH
Q 008097 60 DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPN-SVIYNTLIHSLCKNGKVGRARSL 138 (577)
Q Consensus 60 ~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~ 138 (577)
+++.|+..|. ...... ++|...|+.-..+|+..|++++|++=-.+-++. .|+ ..-|+.+..++.-.|++++|+.-
T Consensus 17 d~~~ai~~~t-~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 17 DFETAIRLFT-EAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cHHHHHHHHH-HHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 8888888887 333332 336777888888888888888887766666654 344 34577777777778888888888
Q ss_pred HHhccCC---CceeHHHHHHHHHhcCChHHH-HHHH------HHHHhCC---CCCCHhhHHHHHHHHHhcC-------CH
Q 008097 139 MSDMEEP---NDVTFSILICAYCKEENLVNA-LVLL------EKSFSFG---FVPDVVTITKVLELLCSVG-------RV 198 (577)
Q Consensus 139 ~~~~~~~---~~~~~~~li~~~~~~~~~~~A-~~~~------~~m~~~g---~~~~~~~~~~ll~~~~~~g-------~~ 198 (577)
|.+-.+. |...++-+..++ ..+.+ .+.| ....... .......|..++..+-+.. ..
T Consensus 93 y~~GL~~d~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 93 YSEGLEKDPSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHhhcCCchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 8876642 334455555554 11111 1111 1111000 0001122333333322110 00
Q ss_pred hHHHHHHHHHHHh-------------hhcCChh----HHHHHHHHHHH-cCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 008097 199 MDAVEILEESGEQ-------------GRLGKVK----GGCRFLKEMER-KGCLPNVDTYNILISSYCETGVLDSALDVFN 260 (577)
Q Consensus 199 ~~a~~~~~~~~~~-------------~~~g~~~----~a~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 260 (577)
..-.+.+..+... ....... .......++.+ ....--..-...+.++..+..+++.|++-+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 0111111000000 0000000 00000000000 0000011123445556666667777777777
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCC----cccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008097 261 DMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGR----ISPYNSVLYGLYRENQQDEALEYLKQMEK 336 (577)
Q Consensus 261 ~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (577)
...... -+..-++....+|...|.+.+.+..-....+.+.....+ ......+..+|.+.++++.+...|.+...
T Consensus 249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 249 KALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 766553 233334455556666666665555544443331100000 01122233456666777777777777554
Q ss_pred cCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008097 337 LFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVV-IYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFN 415 (577)
Q Consensus 337 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 415 (577)
...++.. ..+....+++....+...-. .|... ---.-...+.+.|++..|+..+.+++... +-|...|.
T Consensus 327 e~Rt~~~-------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYs 396 (539)
T KOG0548|consen 327 EHRTPDL-------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYS 396 (539)
T ss_pred hhcCHHH-------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHH
Confidence 2211111 11222233333333333221 12211 11112444556677777777777777653 22455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008097 416 TVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICL 494 (577)
Q Consensus 416 ~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 494 (577)
.-.-+|.+.|.+..|+.=.++.++ ..| ...-|..=..++....++++|.+.+++..+ ..|+..-+..-+.-|
T Consensus 397 NRAac~~kL~~~~~aL~Da~~~ie-----L~p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 397 NRAACYLKLGEYPEALKDAKKCIE-----LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNAEAIDGYRRC 469 (539)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHh-----cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHH
Confidence 666666777777777666654444 334 333344444444455567777777777653 334443333333333
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.35 E-value=7e-05 Score=65.76 Aligned_cols=122 Identities=11% Similarity=0.067 Sum_probs=85.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH-HhcCC--HHH
Q 008097 354 DGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGL-CRQGN--VGT 429 (577)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~-~~~g~--~~~ 429 (577)
.++.+++...++...+. -+.|...|..+...|...|++++|+..|++..+. .| |...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 44556666666666654 2456778888888888888888888888888774 35 455666666653 56666 488
Q ss_pred HHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 008097 430 ALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDY 484 (577)
Q Consensus 430 a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 484 (577)
|.+++++.+. ..| +...+..+...+.+.|++++|...|+++.+. ..|+.
T Consensus 129 A~~~l~~al~-----~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~ 178 (198)
T PRK10370 129 TREMIDKALA-----LDANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRV 178 (198)
T ss_pred HHHHHHHHHH-----hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCc
Confidence 8888885555 455 6677888888888888888888888888754 34443
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=0.00016 Score=68.98 Aligned_cols=149 Identities=16% Similarity=0.170 Sum_probs=107.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCceeh-HHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCH
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRAVDR-SLKILGFCVDGNVEDAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEERV 392 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~ 392 (577)
.-.+...|++++|+..+..+.+..|+...| ......+.+.++..+|.+.++++... .|+ ...+-.+..+|.+.|++
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCCh
Confidence 334556778888888888887777765554 34456777888888888888888774 455 55666777888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHH
Q 008097 393 REASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLL 472 (577)
Q Consensus 393 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 472 (577)
.+|+.+++..... .+-|+..|..|..+|...|+..++..... ..|...|+++.|..++
T Consensus 391 ~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~A---------------------E~~~~~G~~~~A~~~l 448 (484)
T COG4783 391 QEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARA---------------------EGYALAGRLEQAIIFL 448 (484)
T ss_pred HHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHH---------------------HHHHhCCCHHHHHHHH
Confidence 8888888887754 24467778888888888888887766655 2456678888888888
Q ss_pred HHHHHCCCCCCHHHHH
Q 008097 473 VQMVGKGILPDYLTWN 488 (577)
Q Consensus 473 ~~m~~~~~~p~~~~~~ 488 (577)
....++ ++++...|.
T Consensus 449 ~~A~~~-~~~~~~~~a 463 (484)
T COG4783 449 MRASQQ-VKLGFPDWA 463 (484)
T ss_pred HHHHHh-ccCCcHHHH
Confidence 888765 566666654
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.29 E-value=3.5e-05 Score=63.85 Aligned_cols=104 Identities=11% Similarity=-0.023 Sum_probs=72.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVL 315 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 315 (577)
+..+..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|+.....+++ +...+..+.
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~---~~~a~~~lg 99 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS---HPEPVYQTG 99 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CcHHHHHHH
Confidence 3335556667777788888888888777653 446667777777777788888888888877765332 666777777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCcee
Q 008097 316 YGLYRENQQDEALEYLKQMEKLFPRAVD 343 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 343 (577)
.++...|++++|...|+...+..|+...
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMSYADAS 127 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 7777777777777777777776665443
No 123
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.27 E-value=1.6e-06 Score=51.97 Aligned_cols=34 Identities=47% Similarity=0.701 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGHGYLPI 410 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 410 (577)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999898887
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.27 E-value=0.00019 Score=74.92 Aligned_cols=187 Identities=12% Similarity=0.059 Sum_probs=130.2
Q ss_pred HHHHhcCCHhHH-HHHHHHHHHh-hhcCChhHHHHHHHHHHH--cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 008097 190 ELLCSVGRVMDA-VEILEESGEQ-GRLGKVKGGCRFLKEMER--KGCLPNVDTYNILISSYCETGVLDSALDVFNDMKID 265 (577)
Q Consensus 190 ~~~~~~g~~~~a-~~~~~~~~~~-~~~g~~~~a~~~~~~~~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 265 (577)
.+.+..|..++| .+++.++.+. .+.+.+..+..-+-+... +....++..+-.|.....+.|.+++|..+++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~ 115 (694)
T PRK15179 36 AALAEPGESEEAGRELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR 115 (694)
T ss_pred HHhcCcccchhHHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 344555555554 4444444333 333443333333332222 223346778888888888999999999999998876
Q ss_pred CCCcC-HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-cee
Q 008097 266 GISWN-FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVD 343 (577)
Q Consensus 266 g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~ 343 (577)
.|+ ......+...+.+.+++++|....++.....+. +......+..++.+.|++++|..+|+++....|+ ...
T Consensus 116 --~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~---~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~ 190 (694)
T PRK15179 116 --FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS---SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENG 190 (694)
T ss_pred --CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHH
Confidence 454 456677888889999999999999998876332 5566777788888999999999999999876665 566
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 008097 344 RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCL 382 (577)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 382 (577)
+..+...+...|+.++|...|++..+. ..|....|+..
T Consensus 191 ~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 191 YVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 777888888899999999999998876 22344444433
No 125
>PLN02789 farnesyltranstransferase
Probab=98.23 E-value=0.00072 Score=63.95 Aligned_cols=205 Identities=11% Similarity=0.065 Sum_probs=149.9
Q ss_pred HHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCC-
Q 008097 280 GLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYREN-QQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGN- 356 (577)
Q Consensus 280 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~- 356 (577)
.+...++.++|..+...+...++. +..+|+.-..++...| .+++++..++++.+..|+. ..|+.....+.+.|.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~---~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPG---NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch
Confidence 344567889999999999886433 5566777666777777 6799999999999877754 456655545555565
Q ss_pred -HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCH----H
Q 008097 357 -VEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQ---GNV----G 428 (577)
Q Consensus 357 -~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~----~ 428 (577)
.+++..+++++++.. +.|..+|+....++...|+++++++.++++++.+.. |...|+.....+.+. |.. +
T Consensus 123 ~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence 367889998998863 457899999999999999999999999999986532 555676666666554 222 4
Q ss_pred HHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHc----CChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 008097 429 TALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEK----GGFQSASMLLVQMVGKGILP-DYLTWNSLLICLSQ 496 (577)
Q Consensus 429 ~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~ 496 (577)
+...+..+.+. +.| |...|+-+..+|... ++..+|.+++.+... ..| +......|+..++.
T Consensus 201 ~el~y~~~aI~-----~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAIL-----ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHH-----hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHHHHHHHHh
Confidence 67777764666 567 778898888888874 445678888888764 334 45667777777764
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.21 E-value=0.00033 Score=61.57 Aligned_cols=156 Identities=16% Similarity=0.085 Sum_probs=101.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCceehHHHHHHhhh
Q 008097 275 DTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLF-PRAVDRSLKILGFCV 353 (577)
Q Consensus 275 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~ 353 (577)
..+-..+...|+-+.+..+....... .+.|....+..+....+.|++.+|...|.+..... +|...|+.+..+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~---~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA---YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc---CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH
Confidence 45556666677777777766664432 22344455557777777788888887777777653 455666667777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008097 354 DGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKL 433 (577)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 433 (577)
.|+.+.|..-|.+..+. .+-+....|.|.-.|.-.|+.+.|..++......+ .-|...-..+..+....|++++|..+
T Consensus 147 ~Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 77777777777777664 22345566666666777777777777777776543 22455555566666777777777766
Q ss_pred HH
Q 008097 434 VE 435 (577)
Q Consensus 434 ~~ 435 (577)
..
T Consensus 225 ~~ 226 (257)
T COG5010 225 AV 226 (257)
T ss_pred cc
Confidence 65
No 127
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.20 E-value=2.6e-06 Score=51.01 Aligned_cols=35 Identities=37% Similarity=0.605 Sum_probs=32.7
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 008097 148 VTFSILICAYCKEENLVNALVLLEKSFSFGFVPDV 182 (577)
Q Consensus 148 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~ 182 (577)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=0.00022 Score=68.08 Aligned_cols=118 Identities=14% Similarity=0.036 Sum_probs=61.5
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHH
Q 008097 246 YCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQD 325 (577)
Q Consensus 246 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 325 (577)
+...|++++|+..++.+... .+-|...+....+.+.+.++..+|.+.++.+....+. ....+-.+..++.+.|++.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~---~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN---SPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHhcCChH
Confidence 44455555666655555543 1223344444455555556666666666555554222 2334444555555566666
Q ss_pred HHHHHHHHHhhcCC-CceehHHHHHHhhhcCCHHHHHHHHHHH
Q 008097 326 EALEYLKQMEKLFP-RAVDRSLKILGFCVDGNVEDAKRCFDQM 367 (577)
Q Consensus 326 ~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 367 (577)
+|..+++......| ++..|..+..+|...|+..++....-+.
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 66555555554333 3445555555666666555555555444
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.15 E-value=0.00024 Score=62.41 Aligned_cols=159 Identities=16% Similarity=0.125 Sum_probs=129.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHH
Q 008097 240 NILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLY 319 (577)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 319 (577)
..+-..+...|+-+.+..+....... .+.|.......+....+.|++..|...|.+.... .++|...|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l---~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL---APTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc---CCCChhhhhHHHHHHH
Confidence 45556777788888888887775533 2345556666888889999999999999999875 4568999999999999
Q ss_pred hcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 008097 320 RENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASEL 398 (577)
Q Consensus 320 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 398 (577)
+.|+.+.|..-|.+..+..|+ ....+.+...|.-.|+.+.|..++......+. .|...-..+.......|++++|.++
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhh
Confidence 999999999999999998765 45677888888899999999999999988633 3667777788888999999999998
Q ss_pred HHHHH
Q 008097 399 MKEMT 403 (577)
Q Consensus 399 ~~~m~ 403 (577)
...-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 76654
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.00094 Score=58.28 Aligned_cols=157 Identities=15% Similarity=0.202 Sum_probs=101.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHH-HhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 008097 314 VLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKIL-GFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERV 392 (577)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 392 (577)
++-+....|+.+.|...++++....|...-...+-. -+-..|++++|.++++.+.+.+ +.|.+++-.-+...-..|+.
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc
Confidence 333444455555555555555544444332222211 1234577777778887777754 44666676666666677777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcC---ChhHH
Q 008097 393 REASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKG---GFQSA 468 (577)
Q Consensus 393 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g---~~~~A 468 (577)
-+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++.+- +.| ++..+..+.+.+.-.| +.+-|
T Consensus 137 l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll-----~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 137 LEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL-----IQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH-----cCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7888877777764 566888888888888888888888888885555 567 5556666666655444 45667
Q ss_pred HHHHHHHHH
Q 008097 469 SMLLVQMVG 477 (577)
Q Consensus 469 ~~~~~~m~~ 477 (577)
.+++.+..+
T Consensus 211 rkyy~~alk 219 (289)
T KOG3060|consen 211 RKYYERALK 219 (289)
T ss_pred HHHHHHHHH
Confidence 888888764
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.0011 Score=58.35 Aligned_cols=140 Identities=19% Similarity=0.169 Sum_probs=67.3
Q ss_pred HHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHh----hh
Q 008097 278 IRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGF----CV 353 (577)
Q Consensus 278 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~----~~ 353 (577)
...|.+.|++++|.+...... +......=+..+.+..+.+-|.+.+++|.+... ..+.+.|..++ .-
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide-d~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDE-DATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch-HHHHHHHHHHHHHHhcc
Confidence 344666666666666655422 111222222334444455555555555544321 11222222222 22
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008097 354 DGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVG 428 (577)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 428 (577)
.+.+.+|.-+|++|.++ .+|+..+.|-+..++...|++++|..++++..... .-++.|...++..-.+.|...
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDA 258 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCCh
Confidence 33455666666666553 44556666666666666666666666666665432 224445444444444445443
No 132
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.13 E-value=0.016 Score=59.89 Aligned_cols=419 Identities=14% Similarity=0.122 Sum_probs=217.1
Q ss_pred ccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--c-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhH
Q 008097 23 RARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVK--E-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGD 99 (577)
Q Consensus 23 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 99 (577)
..+++..|....+...+. .|+. .|..++.+++. . ..++|..+++ .....+.. |..|...+-.+|.+.+..++
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLE-ALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHh-hhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 457888888888888663 3443 35666676654 3 7888888887 55444433 77888888888889999999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhH----HHHHHHhccCCCceeHHHHHHHHHhc-CChH---------H
Q 008097 100 GFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGR----ARSLMSDMEEPNDVTFSILICAYCKE-ENLV---------N 165 (577)
Q Consensus 100 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~---------~ 165 (577)
|..+|++..+. .|+......+..+|+|.+++.+ |.++++..++.--..|+ +++.+.+. ...+ -
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHH
Confidence 99999998875 4667777788888888887754 56666655544333444 34433322 1222 2
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHH-HHHHHcCCCCChhhHHHHHH
Q 008097 166 ALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFL-KEMERKGCLPNVDTYNILIS 244 (577)
Q Consensus 166 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~ 244 (577)
|.+.++.+.+.+ |.++...+++-...-....|.+++|+.++ ....+.-..-+...-+--+.
T Consensus 173 A~~m~~~~l~~~------------------gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~d 234 (932)
T KOG2053|consen 173 AEKMVQKLLEKK------------------GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLD 234 (932)
T ss_pred HHHHHHHHhccC------------------CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 233333333322 22222222222222223344455555544 22333222224444456677
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHH----------------HHcCCChHHHHHHHHHHHhccCCCCCCc
Q 008097 245 SYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRG----------------LCSGGRIDDGLKILQLMEDSKEGSKGRI 308 (577)
Q Consensus 245 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~----------------~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 308 (577)
.+...+++.+..++-.++...| +|. |...++. +...+.++...+...+.... . ..
T Consensus 235 llk~l~~w~~l~~l~~~Ll~k~--~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~--~---~R 305 (932)
T KOG2053|consen 235 LLKLLNRWQELFELSSRLLEKG--NDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGS--K---SR 305 (932)
T ss_pred HHHHhcChHHHHHHHHHHHHhC--Ccc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcc--c---cc
Confidence 7888899999888888888775 232 3332222 22223344444433333322 0 22
Q ss_pred ccHHHHHHHHH---hcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHh-------h
Q 008097 309 SPYNSVLYGLY---RENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVV-------I 378 (577)
Q Consensus 309 ~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------~ 378 (577)
.+|-+-+.++. .-|+.+++...|-+--. +-..+..=+..|..+=..+.-..+++..... .++.. .
T Consensus 306 gp~LA~lel~kr~~~~gd~ee~~~~y~~kfg---~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~ 380 (932)
T KOG2053|consen 306 GPYLARLELDKRYKLIGDSEEMLSYYFKKFG---DKPCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQ 380 (932)
T ss_pred CcHHHHHHHHHHhcccCChHHHHHHHHHHhC---CCcHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHH
Confidence 23444333333 44777776554433222 1112222222333333333333333333321 11111 0
Q ss_pred HHHHHHHHHhcC-----CHHHHHHHHHHHH---hCC------CCCCHH---------HHHHHHHHHHhcCCHHH---HHH
Q 008097 379 YDCLIHAYCQEE-----RVREASELMKEMT---GHG------YLPIAS---------TFNTVLSGLCRQGNVGT---ALK 432 (577)
Q Consensus 379 ~~~li~~~~~~g-----~~~~A~~~~~~m~---~~g------~~p~~~---------~~~~ll~~~~~~g~~~~---a~~ 432 (577)
+.+.+..-...| ..+.-..++.+.. ++| .-|+.. +.+.++..|.+.++... |+-
T Consensus 381 h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~ 460 (932)
T KOG2053|consen 381 HLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAIT 460 (932)
T ss_pred HHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 222222222222 1223333333322 222 223322 34567778888777653 333
Q ss_pred HHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 008097 433 LVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLT 486 (577)
Q Consensus 433 ~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 486 (577)
+++..+. ..| |..+--.+|.+|+-.|-+..|.++++.+--+.+.-|...
T Consensus 461 LLE~glt-----~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlg 510 (932)
T KOG2053|consen 461 LLENGLT-----KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLG 510 (932)
T ss_pred HHHHHhh-----cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccch
Confidence 4442222 334 344445577888888888888888888865556555543
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.11 E-value=0.00086 Score=70.17 Aligned_cols=160 Identities=12% Similarity=0.121 Sum_probs=117.2
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCcee-hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 008097 304 SKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVD-RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCL 382 (577)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 382 (577)
...+...+-.|.....+.|.+++|..+++...+..|+... ...+...+.+.+++++|...+++..... +-+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 3445677788888888889999999999998888887644 5566778888889999998888888752 2356667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHH
Q 008097 383 IHAYCQEERVREASELMKEMTGHGYLPI-ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCE 461 (577)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~ 461 (577)
..++.+.|++++|+.+|++....+ |+ ..++.++..++...|+.++|...|++.+.. ..|...-|+.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~----~~~~~~~~~~~~----- 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA----IGDGARKLTRRL----- 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----hCcchHHHHHHH-----
Confidence 788888899999999999888733 44 667888888888889999998888865552 233344444332
Q ss_pred cCChhHHHHHHHHHH
Q 008097 462 KGGFQSASMLLVQMV 476 (577)
Q Consensus 462 ~g~~~~A~~~~~~m~ 476 (577)
+++..-..+++++.
T Consensus 230 -~~~~~~~~~~~~~~ 243 (694)
T PRK15179 230 -VDLNADLAALRRLG 243 (694)
T ss_pred -HHHHHHHHHHHHcC
Confidence 34444556666664
No 134
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.10 E-value=5.3e-06 Score=49.26 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGHGYLP 409 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 409 (577)
.+|++++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 477888888888888888888888888777776
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.10 E-value=0.0011 Score=70.23 Aligned_cols=222 Identities=12% Similarity=0.077 Sum_probs=142.1
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHH-----------------HH
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAF-----------------YR 69 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~-----------------~~ 69 (577)
|.+...+..|+..|...+++++|.++.+...+..+..-...|-..+ .+.+. ++.++..+ +.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~-l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI-LSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH-HHHhhcchhhhhhhhhhhhcccccchhHHHHHH
Confidence 4567789999999999999999999999887754322222222222 33333 44444333 11
Q ss_pred HHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCcee
Q 008097 70 KKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVT 149 (577)
Q Consensus 70 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 149 (577)
..|...+ -+...+..+..+|-+.|+.+++.++++++++.. +-|+.+.|.+...|+.. ++++|++++.+...
T Consensus 107 ~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~----- 177 (906)
T PRK14720 107 DKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY----- 177 (906)
T ss_pred HHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH-----
Confidence 0111111 122456667788888999999999999999987 44888999999999999 99999999887653
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh-hhcCChhHHHHHHHHHH
Q 008097 150 FSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ-GRLGKVKGGCRFLKEME 228 (577)
Q Consensus 150 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~g~~~~a~~~~~~~~ 228 (577)
.|....++.++.+++.++....+ .|...+..+++.....-....+..++.-+... ....+++++..+++.+.
T Consensus 178 ------~~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL 250 (906)
T PRK14720 178 ------RFIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKIL 250 (906)
T ss_pred ------HHHhhhcchHHHHHHHHHHhcCc-ccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 26777788888888888876532 23333344444333332233333333333222 44566777777777777
Q ss_pred HcCCCCChhhHHHHHHHHH
Q 008097 229 RKGCLPNVDTYNILISSYC 247 (577)
Q Consensus 229 ~~~~~p~~~~~~~li~~~~ 247 (577)
+.... |.....-++..|.
T Consensus 251 ~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 251 EHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hcCCc-chhhHHHHHHHHH
Confidence 75433 5555666666665
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.08 E-value=6.4e-06 Score=48.89 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=28.0
Q ss_pred ccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 008097 450 GHYSPLIKALCEKGGFQSASMLLVQMVGKGILP 482 (577)
Q Consensus 450 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 482 (577)
.+|+.++++|++.|+++.|.++++.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.06 E-value=0.00015 Score=59.65 Aligned_cols=102 Identities=15% Similarity=0.001 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHH
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPL 455 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~l 455 (577)
.....+...+...|++++|.+.|++....+ +.+...+..+...+.+.|++++|..++++.+. +.| +...+..+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~~l 91 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA-----LDPDDPRPYFHA 91 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCChHHHHHH
Confidence 445555566667777777777777766533 22455566666666777777777777773333 233 55666666
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 008097 456 IKALCEKGGFQSASMLLVQMVGKGILPDYLT 486 (577)
Q Consensus 456 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 486 (577)
..+|...|++++|...+++..+ ..|+...
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~--~~p~~~~ 120 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIE--ICGENPE 120 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hccccch
Confidence 7777777777777777777764 3454433
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0068 Score=53.13 Aligned_cols=184 Identities=18% Similarity=0.186 Sum_probs=128.0
Q ss_pred CChhHHHHHHHHHHH---CC-CCcCHHH-HHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCH
Q 008097 250 GVLDSALDVFNDMKI---DG-ISWNFVT-YDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQ 324 (577)
Q Consensus 250 g~~~~A~~~~~~m~~---~g-~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 324 (577)
.+.++..+++.++.. .| ..++..+ |..++-+....|+.+.|...++.+...-++ +..+-..-..-+-..|++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~---S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG---SKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHhhch
Confidence 456777777777653 23 4455443 445555666788888999888888776322 222211112234557889
Q ss_pred HHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 325 DEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 325 ~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
++|.++++.+.+..|.. +++---+...-..|+--+|++-+....+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999988876644 44444455555667777888888888776 66799999999999999999999999999998
Q ss_pred hCCCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHhhc
Q 008097 404 GHGYLP-IASTFNTVLSGLCRQG---NVGTALKLVEEDMR 439 (577)
Q Consensus 404 ~~g~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~m~ 439 (577)
- +.| ++..|..+...+.-.| +.+-+.++|.+.++
T Consensus 182 l--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 182 L--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred H--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6 346 5666777777665544 45668888886665
No 139
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.0026 Score=56.06 Aligned_cols=98 Identities=11% Similarity=0.093 Sum_probs=52.5
Q ss_pred hhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccH
Q 008097 236 VDTYNILISSYCE----TGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPY 311 (577)
Q Consensus 236 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 311 (577)
..+.+-|..++.+ .+...+|.-+|++|.+. .+|+..+.+-...++...|++++|..+++....++++ ++.+.
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~---dpetL 244 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK---DPETL 244 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC---CHHHH
Confidence 3444444444443 34566777777777643 3566666666666667777777777777776665333 33343
Q ss_pred HHHHHHHHhcCCHHH-HHHHHHHHhhc
Q 008097 312 NSVLYGLYRENQQDE-ALEYLKQMEKL 337 (577)
Q Consensus 312 ~~li~~~~~~g~~~~-A~~~~~~~~~~ 337 (577)
..++..-...|...+ ..+.+.++...
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 333333333343322 23344444433
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.96 E-value=0.00026 Score=58.25 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=73.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVL 315 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 315 (577)
......+...+...|++++|...|+.+...+ +.+...+..+...+.+.|++++|...++...... +.+...+..+.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~la 92 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD---PDDPRPYFHAA 92 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCChHHHHHHH
Confidence 3445556667777888888888888877653 4466777777777777888888888888776652 23555666677
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCcee
Q 008097 316 YGLYRENQQDEALEYLKQMEKLFPRAVD 343 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 343 (577)
..+...|++++|...|+...+..|+...
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 7777778888888887777776665544
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.94 E-value=0.00044 Score=57.58 Aligned_cols=88 Identities=15% Similarity=0.083 Sum_probs=43.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHH
Q 008097 382 LIHAYCQEERVREASELMKEMTGHGYLPIA--STFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKAL 459 (577)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~ 459 (577)
+...+...|++++|...|++.......|+. .....+...+...|++++|+..++ ... .. ......+....++|
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~-~~~--~~--~~~~~~~~~~Gdi~ 128 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQ-QIP--DE--AFKALAAELLGDIY 128 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-hcc--Cc--chHHHHHHHHHHHH
Confidence 334455556666666666655554311111 123334445555666666666655 333 22 22333455566666
Q ss_pred HHcCChhHHHHHHHH
Q 008097 460 CEKGGFQSASMLLVQ 474 (577)
Q Consensus 460 ~~~g~~~~A~~~~~~ 474 (577)
.+.|++++|...|++
T Consensus 129 ~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 129 LAQGDYDEARAAYQK 143 (145)
T ss_pred HHCCCHHHHHHHHHH
Confidence 666666666665554
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.93 E-value=0.00027 Score=68.23 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=48.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 008097 316 YGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREA 395 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 395 (577)
..+...++++.|..+|+++.+..|+. ...++..+...++-.+|.+++++.... .+.|...+..-...|.+.++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHH
Confidence 33334445555555555554444332 222333333444444444444444432 112333333333344444444444
Q ss_pred HHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 008097 396 SELMKEMTGHGYLPIAS-TFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 396 ~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
+++.+++.+ ..|+.. +|..|..+|...|+++.|+..++
T Consensus 254 L~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 254 LEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 444444443 223222 44444444444444444444444
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.91 E-value=0.0002 Score=59.60 Aligned_cols=51 Identities=14% Similarity=0.057 Sum_probs=22.5
Q ss_pred cCChhHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 008097 249 TGVLDSALDVFNDMKIDGISWN---FVTYDTLIRGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 249 ~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
.++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+...
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN 77 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 445555555555554431 111 111222334445555555555555555543
No 144
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.91 E-value=1.6e-05 Score=45.97 Aligned_cols=31 Identities=39% Similarity=0.710 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGHGY 407 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 407 (577)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887663
No 145
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.90 E-value=0.024 Score=54.06 Aligned_cols=441 Identities=14% Similarity=0.150 Sum_probs=241.7
Q ss_pred HhccCChhHHHHHHHHHhhCC-CCC----CHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHH--h
Q 008097 21 LGRARMINDVVKATDLVSRFN-MTP----SLKIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDDYTYAILMKGLC--L 93 (577)
Q Consensus 21 ~~~~g~~~~a~~~~~~~~~~~-~~~----~~~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~--~ 93 (577)
+.+++++.+|..+|.++-+.. ..| ..+..+.+|++|..++.+.....+. .+.+. .| ...|..+..+.. +
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~-~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLM-ELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHH-HHHHh--cC-CchHHHHHHHHHHHH
Confidence 347899999999999985531 112 1455678889998887666665555 33332 23 334556665543 7
Q ss_pred cCCHhHHHHHHHHHHhC--CCCC------------CcchHHHHHHHHHhcCCHhHHHHHHHhccC--------CCceeHH
Q 008097 94 TNRVGDGFKLLHVMKSR--GVKP------------NSVIYNTLIHSLCKNGKVGRARSLMSDMEE--------PNDVTFS 151 (577)
Q Consensus 94 ~~~~~~a~~~~~~~~~~--g~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~ 151 (577)
.+.+++|.+.+...... +..| |-+.-+..++.+...|++.+++.+++++.+ .|..+||
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 89999999988777654 3222 222235677888999999999999999863 5777888
Q ss_pred HHHHHHHhcCChHHHHHHHHHH---HhCCCCCCHhhHHHHHHHHHhc---------CCHhHHHHHHHHHHHh---hhcCC
Q 008097 152 ILICAYCKEENLVNALVLLEKS---FSFGFVPDVVTITKVLELLCSV---------GRVMDAVEILEESGEQ---GRLGK 216 (577)
Q Consensus 152 ~li~~~~~~~~~~~A~~~~~~m---~~~g~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~---~~~g~ 216 (577)
.++-.+.++ .|-++ ....+-|| |--++..|.+. ..+.-+.+++..+.+. .....
T Consensus 172 ~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~ 240 (549)
T PF07079_consen 172 RAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKER 240 (549)
T ss_pred HHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhh
Confidence 755444332 11111 11222332 11222222211 0112223333333322 11111
Q ss_pred hhHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc----CHHHHHHHHHHHHcCCChHHHH
Q 008097 217 VKGGCRFLKEMERKGCLPNVD-TYNILISSYCETGVLDSALDVFNDMKIDGISW----NFVTYDTLIRGLCSGGRIDDGL 291 (577)
Q Consensus 217 ~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~ll~~~~~~g~~~~a~ 291 (577)
..--.+++..-...-+.|+.. ....|+..+.+ +.+++..+-+.+....+.+ =..++..++....+.++...|.
T Consensus 241 l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~ 318 (549)
T PF07079_consen 241 LPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAK 318 (549)
T ss_pred ccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 111222223333333445432 12233333333 5566665555554332111 2356788888899999999999
Q ss_pred HHHHHHHhccCCCCCC---cccHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCceeh-HHHHH---HhhhcCC-HHH
Q 008097 292 KILQLMEDSKEGSKGR---ISPYNSVLYGLYR----ENQQDEALEYLKQMEKLFPRAVDR-SLKIL---GFCVDGN-VED 359 (577)
Q Consensus 292 ~~~~~~~~~~~~~~~~---~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~-~~l~~---~~~~~g~-~~~ 359 (577)
+.+..+...+|+.... ..+-..+-+..+. ..+..+-+.+++.+...+.|..-. ..++. -+-+.|. -++
T Consensus 319 q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dek 398 (549)
T PF07079_consen 319 QYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEK 398 (549)
T ss_pred HHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHH
Confidence 9988887653332110 0111223333331 112233344444444433222111 11111 2334454 788
Q ss_pred HHHHHHHHHHcCCCC-CHhhHHHHH----HHHHhc---CCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHH--HHhcC
Q 008097 360 AKRCFDQMIEEGGVP-NVVIYDCLI----HAYCQE---ERVREASELMKEMTGHGYLPIA----STFNTVLSG--LCRQG 425 (577)
Q Consensus 360 A~~~~~~~~~~~~~p-~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~--~~~~g 425 (577)
|.+++..+.+- .| |..+-|.+. .+|.+. ....+-+.+-+-..+.|+.|-. ..-|.+.+| +...|
T Consensus 399 alnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqg 476 (549)
T PF07079_consen 399 ALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQG 476 (549)
T ss_pred HHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcc
Confidence 89999888873 33 333333322 333332 2234444444445577887743 334444443 46789
Q ss_pred CHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 008097 426 NVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSL 490 (577)
Q Consensus 426 ~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 490 (577)
++.++.-+-. .+. .+.|++.+|..+.-++....+++||..+++.++ |+..+|++-
T Consensus 477 ey~kc~~ys~-WL~----~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP-----~n~~~~dsk 531 (549)
T PF07079_consen 477 EYHKCYLYSS-WLT----KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP-----PNERMRDSK 531 (549)
T ss_pred cHHHHHHHHH-HHH----HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC-----CchhhHHHH
Confidence 9999877766 444 388999999999999999999999999998874 566666553
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.87 E-value=0.00043 Score=66.85 Aligned_cols=123 Identities=18% Similarity=0.120 Sum_probs=88.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhh
Q 008097 274 YDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFC 352 (577)
Q Consensus 274 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~ 352 (577)
..+++..+...++++.|..+|+++.+. ++.....++..+...++..+|.+++.+..+..|.. .........+.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~------~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER------DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc------CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345566666677788888888887766 23345556677777777778888877777665544 22333445577
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 353 VDGNVEDAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+.++.+.|..+.+++... .|+ ..+|..|..+|.+.|++++|+..++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 888888888888888874 455 55999999999999999999998887763
No 147
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.83 E-value=0.037 Score=54.00 Aligned_cols=452 Identities=11% Similarity=0.066 Sum_probs=262.2
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhH
Q 008097 7 SPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTP-SLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTY 84 (577)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~ 84 (577)
-|-|...|+.||+-+..+ ..+++++.++++... -| ....|..-|..-... +++....+|.+-+.+ ..+...|
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk---vLnlDLW 89 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK---VLNLDLW 89 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HhhHhHH
Confidence 467889999999998877 999999999999763 34 567899999988888 999999999944332 2356667
Q ss_pred HHHHHHHHh-cCCHhHH----HHHHHHH-HhCCCCCC-cchHHHHHHH---------HHhcCCHhHHHHHHHhccCC---
Q 008097 85 AILMKGLCL-TNRVGDG----FKLLHVM-KSRGVKPN-SVIYNTLIHS---------LCKNGKVGRARSLMSDMEEP--- 145 (577)
Q Consensus 85 ~~ll~~~~~-~~~~~~a----~~~~~~~-~~~g~~~~-~~~~~~li~~---------~~~~g~~~~A~~~~~~~~~~--- 145 (577)
..-|.--.+ .+....+ .+.|+-. .+.|+.+- -..|+..+.. |....+++..++++.++...
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~ 169 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH 169 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc
Confidence 666654443 2333332 2233333 33454432 3346655554 34445677788888888742
Q ss_pred -------CceeHHHHHHHH-------HhcCChHHHHHHHHHHHh--CCCCCCHhhHHHHHHHHHhcCCHhHH--HHHHHH
Q 008097 146 -------NDVTFSILICAY-------CKEENLVNALVLLEKSFS--FGFVPDVVTITKVLELLCSVGRVMDA--VEILEE 207 (577)
Q Consensus 146 -------~~~~~~~li~~~-------~~~~~~~~A~~~~~~m~~--~g~~~~~~~~~~ll~~~~~~g~~~~a--~~~~~~ 207 (577)
|-..|..=|+.. -+...+..|.++++++.. .|......+ .-..|-.++. .+++..
T Consensus 170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n 242 (656)
T KOG1914|consen 170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKN 242 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHH
Confidence 112222112111 123345566666666532 232222111 0001111111 112222
Q ss_pred HHHhhhcCChh-------H--HHHHHHH-HHHcCCCCChhhHHH-H----HHHHHhcCC-------hhHHHHHHHHHHHC
Q 008097 208 SGEQGRLGKVK-------G--GCRFLKE-MERKGCLPNVDTYNI-L----ISSYCETGV-------LDSALDVFNDMKID 265 (577)
Q Consensus 208 ~~~~~~~g~~~-------~--a~~~~~~-~~~~~~~p~~~~~~~-l----i~~~~~~g~-------~~~A~~~~~~m~~~ 265 (577)
.++..+.+-+. . ..-.+++ +.-.+..|++....+ . -+.+...|+ .+++..+++.....
T Consensus 243 ~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~ 322 (656)
T KOG1914|consen 243 WIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG 322 (656)
T ss_pred HHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 22221111110 0 0011222 122233333321111 1 112233333 35566666665543
Q ss_pred CCCcCHHHHHHHHHHHH---cCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcC--C-
Q 008097 266 GISWNFVTYDTLIRGLC---SGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLF--P- 339 (577)
Q Consensus 266 g~~~~~~~~~~ll~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--p- 339 (577)
-..-+..+|..+.+.=- +-...+.....++++... .... -..+|..+++...+..-++.|..+|.++.+.. +
T Consensus 323 l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~-~~~~-~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~h 400 (656)
T KOG1914|consen 323 LLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKI-EDID-LTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRH 400 (656)
T ss_pred HHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhh-hccC-CceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcc
Confidence 22334444444433211 111355556666666654 1222 34568888998889999999999999998742 3
Q ss_pred CceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHH
Q 008097 340 RAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIA--STFNTV 417 (577)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l 417 (577)
.....++++.-|| .++.+-|.++|+-=.+. ...++.--...++-+...++-..+..+|++....++.||. ..|..+
T Consensus 401 hVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~ 478 (656)
T KOG1914|consen 401 HVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRM 478 (656)
T ss_pred hhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHH
Confidence 4455666666665 57888999999987665 3334555567888888999999999999999988777765 479999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHH
Q 008097 418 LSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQM 475 (577)
Q Consensus 418 l~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 475 (577)
+.-=+.-|+...+.++-++.+........|...+-..+++-|.-.+....-..-++.|
T Consensus 479 l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 479 LEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 9988999999999998885555211114555556677888888777765544444443
No 148
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.83 E-value=0.046 Score=54.98 Aligned_cols=357 Identities=15% Similarity=0.100 Sum_probs=180.8
Q ss_pred CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCC--------CcchHHHHHHHHHhcC
Q 008097 60 DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSR-GVKP--------NSVIYNTLIHSLCKNG 130 (577)
Q Consensus 60 ~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~--------~~~~~~~li~~~~~~g 130 (577)
..++|.+..+ -.|.+..|..+.......-.++.|+..|-+...- |++. +.....+=+.+| -|
T Consensus 678 gledA~qfiE-------dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g 748 (1189)
T KOG2041|consen 678 GLEDAIQFIE-------DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YG 748 (1189)
T ss_pred chHHHHHHHh-------cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hc
Confidence 5566666555 2577778877776666666666666666544321 2210 111112222222 48
Q ss_pred CHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCCHhHHHHHHH
Q 008097 131 KVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPD----VVTITKVLELLCSVGRVMDAVEILE 206 (577)
Q Consensus 131 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~ 206 (577)
++++|++++-.+..+|. .|..+.+.|++-.+.++++.- |-..| ...|+.+...+.....+++|.+.+.
T Consensus 749 ~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 749 EFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred chhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999988877664 356667778887777766531 11111 3466777777777777777777654
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC
Q 008097 207 ESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGR 286 (577)
Q Consensus 207 ~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 286 (577)
.- |+. ...+.++.+..++++-..+-..+ +-|...+-.+.+++.+.|.
T Consensus 821 ~~------~~~----------------------e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGM 867 (1189)
T KOG2041|consen 821 YC------GDT----------------------ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGM 867 (1189)
T ss_pred hc------cch----------------------HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhch
Confidence 31 111 22344444444444444433333 3344455556666666666
Q ss_pred hHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceeh--------------HHHHHHhh
Q 008097 287 IDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDR--------------SLKILGFC 352 (577)
Q Consensus 287 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--------------~~l~~~~~ 352 (577)
-++|.+.|-+.... .+.+..|...++|.+|.++-+..+- |...+. .--|..+.
T Consensus 868 C~qAV~a~Lr~s~p-----------kaAv~tCv~LnQW~~avelaq~~~l--~qv~tliak~aaqll~~~~~~eaIe~~R 934 (1189)
T KOG2041|consen 868 CDQAVEAYLRRSLP-----------KAAVHTCVELNQWGEAVELAQRFQL--PQVQTLIAKQAAQLLADANHMEAIEKDR 934 (1189)
T ss_pred HHHHHHHHHhccCc-----------HHHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHhhcchHHHHHHhh
Confidence 66666655432211 2344556666666666665544321 111110 11234455
Q ss_pred hcCCHHHHHHHHHHHHHc----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008097 353 VDGNVEDAKRCFDQMIEE----GGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVG 428 (577)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 428 (577)
+.|..-+|.+++.+|.+. +.+|-..--..++.++. ..+..++++-.++...+|..-|... +...|..+
T Consensus 935 ka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~ 1006 (1189)
T KOG2041|consen 935 KAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLA 1006 (1189)
T ss_pred hcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhh
Confidence 666666666666666553 33322221112222221 1222334444444444443322211 22333344
Q ss_pred HHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 008097 429 TALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGK-GILPDYLTWNSLLIC 493 (577)
Q Consensus 429 ~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~ 493 (577)
++-++.+ ..- --....|+..|..--...|..+.|++.--.+.+- .+-|...+|..|.-|
T Consensus 1007 ~~~ri~~-n~W-----rgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALa 1066 (1189)
T KOG2041|consen 1007 EQSRILE-NTW-----RGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALA 1066 (1189)
T ss_pred hHHHHHH-hhh-----hhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHH
Confidence 4444444 111 0123455566666667788888888765555421 245666666655433
No 149
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.83 E-value=2.6e-05 Score=45.01 Aligned_cols=31 Identities=32% Similarity=0.563 Sum_probs=24.3
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 008097 148 VTFSILICAYCKEENLVNALVLLEKSFSFGF 178 (577)
Q Consensus 148 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 178 (577)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888877653
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.82 E-value=0.00052 Score=54.86 Aligned_cols=26 Identities=8% Similarity=-0.063 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+..+..++.+.|+.++|.+.++++.+
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 151
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.81 E-value=0.024 Score=53.21 Aligned_cols=88 Identities=8% Similarity=0.015 Sum_probs=47.1
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHcCCC-----CCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHH
Q 008097 348 ILGFCVDGNVEDAKRCFDQMIEEGGV-----PNVV-IYDCLIHAYCQEERVREASELMKEMTGH--GYLPI--ASTFNTV 417 (577)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~l 417 (577)
...+.+.|++++|..+|+++...... .+.. .|-..+-++...|++..|.+.|++.... ++..+ ......|
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l 241 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDL 241 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Confidence 44466667777777777776654221 1111 2233344556678888888888887643 22222 3345666
Q ss_pred HHHHHh--cCCHHHHHHHHH
Q 008097 418 LSGLCR--QGNVGTALKLVE 435 (577)
Q Consensus 418 l~~~~~--~g~~~~a~~~~~ 435 (577)
+.+|-. ...+.++..-|+
T Consensus 242 ~~A~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 242 LEAYEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHHHHTT-CCCHHHHCHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHc
Confidence 666643 334555555555
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.80 E-value=0.0067 Score=56.90 Aligned_cols=144 Identities=18% Similarity=0.143 Sum_probs=81.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhc-CCHHHHHHHHHHHHHc----CCCCC--HhhHHHHHHHHHh
Q 008097 316 YGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVD-GNVEDAKRCFDQMIEE----GGVPN--VVIYDCLIHAYCQ 388 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~li~~~~~ 388 (577)
..|...|++..|-..+..+-+ .|-.. |+++.|.+.|++..+. + .+. ..++..+...+.+
T Consensus 102 ~~y~~~G~~~~aA~~~~~lA~-------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKELAE-------------IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHHHH-------------HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHH-------------HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence 346667777776666555433 34455 6777777777776554 1 111 3356677788999
Q ss_pred cCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC--cccHHHHHHHHH
Q 008097 389 EERVREASELMKEMTGHGYL-----PIAS-TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG--SGHYSPLIKALC 460 (577)
Q Consensus 389 ~g~~~~A~~~~~~m~~~g~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~--~~~~~~li~~~~ 460 (577)
.|++++|+++|++....-.. ++.. .|...+-.+...|+...|.+.|++... .+.++..+ ......|++++-
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~-~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS-QDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT-TSTTSTTSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCCCcHHHHHHHHHHHHHH
Confidence 99999999999998754322 2222 233334466778999999999994333 23333332 233444555553
Q ss_pred HcCC---hhHHHHHHHHH
Q 008097 461 EKGG---FQSASMLLVQM 475 (577)
Q Consensus 461 ~~g~---~~~A~~~~~~m 475 (577)
.|+ +++|..-|+.+
T Consensus 247 -~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 247 -EGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp -TT-CCCHHHHCHHHTTS
T ss_pred -hCCHHHHHHHHHHHccc
Confidence 344 44444444444
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.77 E-value=0.00057 Score=54.64 Aligned_cols=102 Identities=15% Similarity=0.080 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHH
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKIDGI--SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLY 316 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 316 (577)
+..+...+.+.|++++|...|..+..... +.....+..+...+.+.|+++.|...|+.+....++.+.....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34445555666666666666666654311 0012344445566666666666666666665543332222334555555
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCC
Q 008097 317 GLYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
++.+.|+.++|...++++.+..|+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcC
Confidence 555556666665555555554443
No 154
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.68 E-value=0.00077 Score=65.43 Aligned_cols=109 Identities=15% Similarity=0.236 Sum_probs=52.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccH
Q 008097 375 NVVIYDCLIHAYCQEERVREASELMKEMTGH--GYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHY 452 (577)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~ 452 (577)
+......++..+....+.+++..++.+.... ....-..|..++++.|...|..++++.+++ .=. .+|+-||..++
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~-n~~--~yGiF~D~~s~ 141 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLK-NRL--QYGIFPDNFSF 141 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHh-Chh--hcccCCChhhH
Confidence 3444444444444444555555555554432 111112233455555555555555555555 222 35555555555
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 008097 453 SPLIKALCEKGGFQSASMLLVQMVGKGILPDYLT 486 (577)
Q Consensus 453 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 486 (577)
+.|++.+.+.|++..|.++.-.|..++...+..+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t 175 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPST 175 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchH
Confidence 5555555555555555555555544444333333
No 155
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.65 E-value=0.058 Score=51.07 Aligned_cols=129 Identities=13% Similarity=0.117 Sum_probs=95.5
Q ss_pred ehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008097 343 DRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLC 422 (577)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 422 (577)
+.+..+.-+...|....|.++-.+.. -|+..-|-..+.+|+..+++++-.++... . -.++-|-.++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHH
Confidence 44555666677788888888766663 37888999999999999999887775432 1 23467888899999
Q ss_pred hcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchH
Q 008097 423 RQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTW 500 (577)
Q Consensus 423 ~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 500 (577)
..|...+|..++. .+. +..-+..|.+.|++.+|.+.--+.. |...+..+..-|..+...
T Consensus 249 ~~~~~~eA~~yI~-k~~------------~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~~~~~ 307 (319)
T PF04840_consen 249 KYGNKKEASKYIP-KIP------------DEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPGNNDQ 307 (319)
T ss_pred HCCCHHHHHHHHH-hCC------------hHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCCCChH
Confidence 9999999998888 322 3667888999999999988766664 666677776666554443
No 156
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.099 Score=53.25 Aligned_cols=98 Identities=15% Similarity=0.130 Sum_probs=62.0
Q ss_pred hCCCCCCcchH-----HHHHHHHHhcCCHhHHHHHHHhccCCC---ceeHHHHHHHHHhcCCh--HHHHHHHHHHHhCCC
Q 008097 109 SRGVKPNSVIY-----NTLIHSLCKNGKVGRARSLMSDMEEPN---DVTFSILICAYCKEENL--VNALVLLEKSFSFGF 178 (577)
Q Consensus 109 ~~g~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~--~~A~~~~~~m~~~g~ 178 (577)
..|++.+..-| ..+|+-+...+.+..|+++-..+..|- ...|.....-+.+..+. +++++..++=.....
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 34665555544 346777888899999999998888765 34455555666665332 344444443333222
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 008097 179 VPDVVTITKVLELLCSVGRVMDAVEILEE 207 (577)
Q Consensus 179 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 207 (577)
-...+|..+.+--...|+++.|..+++.
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 3456777777777788888888887643
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.00067 Score=60.89 Aligned_cols=95 Identities=15% Similarity=0.168 Sum_probs=58.8
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHH
Q 008097 351 FCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIA-STFNTVLSGLCRQGNVGT 429 (577)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~ 429 (577)
..+.+++.+|+..|.+.++. .+.|.+-|..-..+|.+.|.++.|++-.+..+. +.|.. .+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 45666677777777776664 223555566666667777777777666666665 34543 356666666777777777
Q ss_pred HHHHHHHhhcccCCCCCCCcccHH
Q 008097 430 ALKLVEEDMRGIGRGSLPGSGHYS 453 (577)
Q Consensus 430 a~~~~~~~m~~~~~~~~p~~~~~~ 453 (577)
|.+.|++.+. +.|+-++|-
T Consensus 168 A~~aykKaLe-----ldP~Ne~~K 186 (304)
T KOG0553|consen 168 AIEAYKKALE-----LDPDNESYK 186 (304)
T ss_pred HHHHHHhhhc-----cCCCcHHHH
Confidence 7766665554 666555443
No 158
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.60 E-value=0.0011 Score=50.27 Aligned_cols=76 Identities=16% Similarity=0.330 Sum_probs=60.7
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008097 348 ILGFCVDGNVEDAKRCFDQMIEEGG-VPNVVIYDCLIHAYCQEE--------RVREASELMKEMTGHGYLPIASTFNTVL 418 (577)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~ll 418 (577)
|..+...+++.....+|+.+.+.|+ -|+..+|+.++.+.++.. +.-+.+.+++.|+..+++|+..||+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 4455566888888899999998888 789999999988877643 3456778888888888999999999888
Q ss_pred HHHHh
Q 008097 419 SGLCR 423 (577)
Q Consensus 419 ~~~~~ 423 (577)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 77654
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.59 E-value=0.0013 Score=49.76 Aligned_cols=92 Identities=17% Similarity=0.138 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHH
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIK 457 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~ 457 (577)
|..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|.+.+++.+. ..| +...+..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~ 76 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALE-----LDPDNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCcchhHHHHHHH
Confidence 3445555666666666666666665532 12234455556666666666666666663333 223 3345666666
Q ss_pred HHHHcCChhHHHHHHHHHH
Q 008097 458 ALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 458 ~~~~~g~~~~A~~~~~~m~ 476 (577)
.+...|++++|...+++..
T Consensus 77 ~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 77 AYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 6666666666666666654
No 160
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.58 E-value=0.0014 Score=63.73 Aligned_cols=99 Identities=16% Similarity=0.117 Sum_probs=49.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKID--GISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYN 312 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 312 (577)
+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..+++..++..=..- |+-||..++|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~y--GiF~D~~s~n 142 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQY--GIFPDNFSFN 142 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhc--ccCCChhhHH
Confidence 4444444455444455555555555555433 11111223345555555555555555555544433 5555555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 008097 313 SVLYGLYRENQQDEALEYLKQME 335 (577)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~ 335 (577)
.||+.+.+.|++..|.++...|.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHH
Confidence 55555555555555555555543
No 161
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.54 E-value=0.0011 Score=50.10 Aligned_cols=86 Identities=21% Similarity=0.207 Sum_probs=57.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHH
Q 008097 151 SILICAYCKEENLVNALVLLEKSFSFGF-VPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMER 229 (577)
Q Consensus 151 ~~li~~~~~~~~~~~A~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~ 229 (577)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..--..+.+ +.+...+.+++.|..
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie-----------~kl~~LLtvYqDiL~ 97 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIE-----------NKLTNLLTVYQDILS 97 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHH-----------HHHHHHHHHHHHHHH
Confidence 3456667777999999999999999999 9999999999998876432211111 112233445556666
Q ss_pred cCCCCChhhHHHHHHHHH
Q 008097 230 KGCLPNVDTYNILISSYC 247 (577)
Q Consensus 230 ~~~~p~~~~~~~li~~~~ 247 (577)
.+++|+..+|+.++..+.
T Consensus 98 ~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 98 NKLKPNDETYNIVLGSLL 115 (120)
T ss_pred hccCCcHHHHHHHHHHHH
Confidence 666666666666655543
No 162
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.54 E-value=0.018 Score=52.33 Aligned_cols=173 Identities=9% Similarity=0.018 Sum_probs=94.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcCH-HHH---HHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHH
Q 008097 242 LISSYCETGVLDSALDVFNDMKIDGISWNF-VTY---DTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYG 317 (577)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 317 (577)
....+...|++++|...|+++... -|+. ..- -.+..+|.+.+++++|...+++..+..|+.+- ..+...+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~--~~~a~Y~~g 113 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN--IDYVLYMRG 113 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc--hHHHHHHHH
Confidence 344455677777777777777664 2222 221 34456677777777777777777766443321 122222222
Q ss_pred HHh--c---------------CC---HHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHh
Q 008097 318 LYR--E---------------NQ---QDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVV 377 (577)
Q Consensus 318 ~~~--~---------------g~---~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 377 (577)
.+. . .+ ..+|+..|+.+.+..|+.. -..+|...+..+... =..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~-------------ya~~A~~rl~~l~~~----la~ 176 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ-------------YTTDATKRLVFLKDR----LAK 176 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh-------------hHHHHHHHHHHHHHH----HHH
Confidence 211 1 11 2345566666666666542 233444333333221 011
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTGH--GYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
.--.+..-|.+.|.+..|+.-++.+++. +.+........+..+|...|..++|..+..
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 1124455677777777777777777753 112233456667777888888888777665
No 163
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.52 E-value=0.0013 Score=49.68 Aligned_cols=96 Identities=19% Similarity=0.180 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL 318 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 318 (577)
+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...... +.+...+..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD---PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcchhHHHHHHHHH
Confidence 4455566667777777777777776542 2234556666677777777777777777766542 11334566666666
Q ss_pred HhcCCHHHHHHHHHHHhhcC
Q 008097 319 YRENQQDEALEYLKQMEKLF 338 (577)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~ 338 (577)
...|++++|...+....+..
T Consensus 79 ~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 79 YKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHhHHHHHHHHHHHHccC
Confidence 66777777766666665543
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.43 E-value=0.0028 Score=61.49 Aligned_cols=87 Identities=17% Similarity=0.096 Sum_probs=50.5
Q ss_pred HhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 008097 350 GFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVG 428 (577)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~ 428 (577)
.+...|++++|+..|+++++.. +.+...|..+..+|.+.|++++|+..++++++. .| +...|..+..+|.+.|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHH
Confidence 4455566666666666666542 224555556666666666666666666666653 23 3445555556666666666
Q ss_pred HHHHHHHHhhc
Q 008097 429 TALKLVEEDMR 439 (577)
Q Consensus 429 ~a~~~~~~~m~ 439 (577)
+|...|++.+.
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 66666664444
No 165
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.43 E-value=0.0011 Score=56.88 Aligned_cols=91 Identities=20% Similarity=0.297 Sum_probs=51.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008097 353 VDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALK 432 (577)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 432 (577)
+.|.++=....+..|.+-|+..|..+|+.|++.+=+ |.+ .|.. .|.++..-| -.+.+-|++
T Consensus 64 RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n-~fQ~~F~hy--p~Qq~c~i~ 124 (228)
T PF06239_consen 64 RRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRN-FFQAEFMHY--PRQQECAID 124 (228)
T ss_pred CcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------cccc-HHHHHhccC--cHHHHHHHH
Confidence 346666677777777777777777777777776643 211 0110 011111001 123455666
Q ss_pred HHHHhhcccCCCCCCCcccHHHHHHHHHHcCCh
Q 008097 433 LVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGF 465 (577)
Q Consensus 433 ~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~ 465 (577)
+++ .|+ .+|+.||.+++..+++.+++.+..
T Consensus 125 lL~-qME--~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 125 LLE-QME--NNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHH-HHH--HcCCCCcHHHHHHHHHHhccccHH
Confidence 666 666 666666666666666666666653
No 166
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.40 E-value=0.0016 Score=58.59 Aligned_cols=99 Identities=21% Similarity=0.219 Sum_probs=81.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHH
Q 008097 316 YGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEERVR 393 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 393 (577)
.-..+.+++.+|+..|.++.++.|.. +-|..-..+|++.|.++.|++-.+..+.. .|. ..+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 45778899999999999999988754 55566788899999999999999988873 444 568999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHH
Q 008097 394 EASELMKEMTGHGYLPIASTFNTVL 418 (577)
Q Consensus 394 ~A~~~~~~m~~~g~~p~~~~~~~ll 418 (577)
+|++.|++.++ +.|+-.+|-.=|
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHH
Confidence 99999999987 679887765433
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.39 E-value=0.0022 Score=59.90 Aligned_cols=80 Identities=13% Similarity=0.112 Sum_probs=40.5
Q ss_pred CCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC--C----CceeHHHHHHHHHhcCChHHHHH
Q 008097 95 NRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--P----NDVTFSILICAYCKEENLVNALV 168 (577)
Q Consensus 95 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~A~~ 168 (577)
++.+.|.++|+...+. +..+...|...++.+.+.|+.+.|+.+|++... + -...|...+..=.+.|+.+.+.+
T Consensus 50 ~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 50 KDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp S-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444455555555543 334455555555555555555555555555543 1 12355555555555566666666
Q ss_pred HHHHHHh
Q 008097 169 LLEKSFS 175 (577)
Q Consensus 169 ~~~~m~~ 175 (577)
+.+++..
T Consensus 129 v~~R~~~ 135 (280)
T PF05843_consen 129 VEKRAEE 135 (280)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555544
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.35 E-value=0.0032 Score=58.77 Aligned_cols=94 Identities=12% Similarity=0.081 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcCCHHHHHHHH
Q 008097 324 QDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN---VVIYDCLIHAYCQEERVREASELM 399 (577)
Q Consensus 324 ~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~ 399 (577)
.+.|..+|+...+..|. ...|...++.+.+.++.+.|..+|++.... +.++ ...|...+.-=.+.|+.+.+.++.
T Consensus 52 ~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~ 130 (280)
T PF05843_consen 52 PKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVE 130 (280)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33344444444443222 233344444444555555555555555543 2221 236666666666777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHH
Q 008097 400 KEMTGHGYLPIASTFNTVLSG 420 (577)
Q Consensus 400 ~~m~~~g~~p~~~~~~~ll~~ 420 (577)
+++.+. -|+...+..+.+-
T Consensus 131 ~R~~~~--~~~~~~~~~f~~r 149 (280)
T PF05843_consen 131 KRAEEL--FPEDNSLELFSDR 149 (280)
T ss_dssp HHHHHH--TTTS-HHHHHHCC
T ss_pred HHHHHH--hhhhhHHHHHHHH
Confidence 766652 3443344334433
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.33 E-value=0.0073 Score=61.33 Aligned_cols=60 Identities=13% Similarity=0.053 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 412 STFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 412 ~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
..+..+.-.....|++++|...+++.+. +.|+...|..+...+...|+.++|.+.+++..
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~-----L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAID-----LEMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344433333344555555555554333 33444555555555555555555555555544
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.33 E-value=0.0046 Score=60.00 Aligned_cols=99 Identities=16% Similarity=0.079 Sum_probs=55.9
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 008097 317 GLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREA 395 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 395 (577)
.+...|++++|+..|.++.+..|+. ..+..+..+|.+.|++++|+..+++++... +.+...|..+..+|...|++++|
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 3445556666666666655554432 234444455566666666666666666542 22455666666666677777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH
Q 008097 396 SELMKEMTGHGYLPIASTFNTVL 418 (577)
Q Consensus 396 ~~~~~~m~~~g~~p~~~~~~~ll 418 (577)
+..|++.++ +.|+...+...+
T Consensus 90 ~~~~~~al~--l~P~~~~~~~~l 110 (356)
T PLN03088 90 KAALEKGAS--LAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHH--hCCCCHHHHHHH
Confidence 777776665 335544444333
No 171
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.31 E-value=0.057 Score=53.83 Aligned_cols=265 Identities=13% Similarity=0.131 Sum_probs=128.9
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHH
Q 008097 79 GDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYC 158 (577)
Q Consensus 79 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 158 (577)
|-...+.+-+-.+...|.+++|.++-. .|+ ...-|..|..-....=+++-|++.+.+...
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iac----lgV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRd-------------- 613 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIAC----LGV--TDTDWRELAMEALEALDFETARKAYIRVRD-------------- 613 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccc----cce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhc--------------
Confidence 334445555556667777777655421 121 222344444444444455555555544332
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhh
Q 008097 159 KEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDT 238 (577)
Q Consensus 159 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 238 (577)
-.+-+-+.-++++++.|-.|+.... ...|+-.|++.+|.++|. ++|.-..|.++|..|.--
T Consensus 614 --l~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk------~~G~enRAlEmyTDlRMF-------- 674 (1081)
T KOG1538|consen 614 --LRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFK------RSGHENRALEMYTDLRMF-------- 674 (1081)
T ss_pred --cHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHH------HcCchhhHHHHHHHHHHH--------
Confidence 2233444456677777777776543 344566788888888874 467777777777655431
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC--CC-CcCHHHHHHHHHHHHcCCChHHHHHH-------------HHHHHhccC
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKID--GI-SWNFVTYDTLIRGLCSGGRIDDGLKI-------------LQLMEDSKE 302 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-~~~~~~~~~ll~~~~~~g~~~~a~~~-------------~~~~~~~~~ 302 (577)
-...-|...|..++-..+.++=.+- .+ +|- +...++...|+.++|..+ -.++...
T Consensus 675 --D~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~-- 745 (1081)
T KOG1538|consen 675 --DYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKA-- 745 (1081)
T ss_pred --HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchh--
Confidence 1233444555554444333321110 01 111 122223334444444333 2222211
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhh----
Q 008097 303 GSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVI---- 378 (577)
Q Consensus 303 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---- 378 (577)
+..+...+..-+.+...+.-|.++|.+|-.. ..++......+++.+|..+-++..+ ..||+..
T Consensus 746 ----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaq 812 (1081)
T KOG1538|consen 746 ----EREPLLLCATYLKKLDSPGLAAEIFLKMGDL-------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQ 812 (1081)
T ss_pred ----hhhHHHHHHHHHhhccccchHHHHHHHhccH-------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHH
Confidence 2233333333444445555566666655331 3345555566666666666666554 2333221
Q ss_pred -------HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 379 -------YDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 379 -------~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+.-.-.+|.+.|+-.||.++++++..
T Consensus 813 wLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 12222355556666666666666543
No 172
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.31 E-value=0.042 Score=49.98 Aligned_cols=55 Identities=9% Similarity=0.038 Sum_probs=29.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 008097 243 ISSYCETGVLDSALDVFNDMKID--GISWNFVTYDTLIRGLCSGGRIDDGLKILQLM 297 (577)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 297 (577)
..-|.+.|.+..|..-|+.+.+. +.+........++.+|.+.|..++|..+...+
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34455666666666666666543 22223344455556666666666666555444
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.29 E-value=0.00052 Score=50.84 Aligned_cols=78 Identities=26% Similarity=0.377 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 008097 355 GNVEDAKRCFDQMIEEGGV-PNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIA-STFNTVLSGLCRQGNVGTALK 432 (577)
Q Consensus 355 g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~ 432 (577)
|+++.|+.+|+++.+.... ++...|-.+..+|.+.|++++|+.++++ .+ ..|+. .....+..+|...|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4455555555555553211 1233344455555566666666666555 21 11221 222233445555566666655
Q ss_pred HHH
Q 008097 433 LVE 435 (577)
Q Consensus 433 ~~~ 435 (577)
.|+
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 174
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.29 E-value=0.0055 Score=50.22 Aligned_cols=88 Identities=11% Similarity=-0.047 Sum_probs=48.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHH
Q 008097 382 LIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKAL 459 (577)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~ 459 (577)
+..-+...|++++|..+|+-+.. +.| +..-|..|.-.|...|++++|+..|..... +.| ++..+-.+..++
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-----L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-----IKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----cCCCCchHHHHHHHHH
Confidence 33444556666666666666554 234 233345555555566666666666663333 334 555566666666
Q ss_pred HHcCChhHHHHHHHHHH
Q 008097 460 CEKGGFQSASMLLVQMV 476 (577)
Q Consensus 460 ~~~g~~~~A~~~~~~m~ 476 (577)
...|+.+.|.+.|+...
T Consensus 114 L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 114 LACDNVCYAIKALKAVV 130 (157)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 66666666666665554
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.28 E-value=0.006 Score=52.26 Aligned_cols=54 Identities=11% Similarity=-0.007 Sum_probs=25.0
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 351 FCVDGNVEDAKRCFDQMIEEGGVP--NVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+...|++++|...|++.......| ...+|..+...|...|++++|++.+++...
T Consensus 45 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 45 AQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444321111 123455555555555555555555555554
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.27 E-value=0.012 Score=46.48 Aligned_cols=93 Identities=23% Similarity=0.138 Sum_probs=53.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHH
Q 008097 382 LIHAYCQEERVREASELMKEMTGHGYLPI--ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKA 458 (577)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~ 458 (577)
+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+|++.+. .+.-.+ +......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~--~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE--EFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCccccHHHHHHHHHH
Confidence 34455666777777777777776665543 22455566677777777777777774444 211100 12222233445
Q ss_pred HHHcCChhHHHHHHHHHH
Q 008097 459 LCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 459 ~~~~g~~~~A~~~~~~m~ 476 (577)
+...|+.++|.+.+-...
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 666777777777665543
No 177
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.25 E-value=0.01 Score=51.08 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHH
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGHGYLPI--ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPL 455 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~l 455 (577)
+..+...|...|++++|+..|++..+....|+ ...+..+...+.+.|++++|...+++.+. +.| +...+..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~l 112 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE-----LNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCcccHHHHHHH
Confidence 44444444445555555555555443221111 12344444445555555555555553333 223 23334444
Q ss_pred HHHHHHcCC--------------hhHHHHHHHHHH
Q 008097 456 IKALCEKGG--------------FQSASMLLVQMV 476 (577)
Q Consensus 456 i~~~~~~g~--------------~~~A~~~~~~m~ 476 (577)
..+|...|+ +++|.+.+++..
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~ 147 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI 147 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH
Confidence 444444443 456666666665
No 178
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.24 E-value=0.012 Score=50.57 Aligned_cols=90 Identities=14% Similarity=0.010 Sum_probs=55.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWN--FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNS 313 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 313 (577)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+.....+. +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK---QPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHHH
Confidence 34456666677777888888888887765432221 345666677777777777777777777664221 3444555
Q ss_pred HHHHHHhcCCHHHHH
Q 008097 314 VLYGLYRENQQDEAL 328 (577)
Q Consensus 314 li~~~~~~g~~~~A~ 328 (577)
+...+...|+...+.
T Consensus 112 lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 112 IAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHcCChHhHh
Confidence 555555555544433
No 179
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.23 E-value=0.19 Score=47.31 Aligned_cols=299 Identities=15% Similarity=0.134 Sum_probs=186.2
Q ss_pred eHHHHHHHHH--hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHH
Q 008097 149 TFSILICAYC--KEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKE 226 (577)
Q Consensus 149 ~~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~ 226 (577)
.|.+|-.++. -.|+-..|.++-.+..+. +..|......++.+-.. .-.|+.+.|++-|+.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaa-----------------l~eG~~~~Ar~kfeA 145 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAA-----------------LLEGDYEDARKKFEA 145 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHH-----------------HhcCchHHHHHHHHH
Confidence 3445555544 357777777766554321 33444445555543322 122444444555566
Q ss_pred HHHcCCCCChhhHHH----HHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Q 008097 227 MERKGCLPNVDTYNI----LISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE 302 (577)
Q Consensus 227 ~~~~~~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 302 (577)
|.. |..+-.. |.-.--+.|..+.|...-.+.-..- +--...+.+.+...+..|+++.|+++++.-....
T Consensus 146 Ml~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~- 218 (531)
T COG3898 146 MLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK- 218 (531)
T ss_pred Hhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH-
Confidence 655 3333222 2222335688888887777765442 2234667788888888999999999888665431
Q ss_pred CCCCCccc--HHHHHHHH---HhcCCHHHHHHHHHHHhhcCCCceehHHH-HHHhhhcCCHHHHHHHHHHHHHcCCCCCH
Q 008097 303 GSKGRISP--YNSVLYGL---YRENQQDEALEYLKQMEKLFPRAVDRSLK-ILGFCVDGNVEDAKRCFDQMIEEGGVPNV 376 (577)
Q Consensus 303 ~~~~~~~~--~~~li~~~---~~~g~~~~A~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 376 (577)
.+.++..- -..|+.+- .-..+...|...-.+..+..|+.+.-..+ ..++.+.|++.++-.+++.+-+.. |.+
T Consensus 219 vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP 296 (531)
T COG3898 219 VIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHP 296 (531)
T ss_pred hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CCh
Confidence 22223221 22233222 12345777888888888888887664443 457899999999999999999864 444
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHH
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTG-HGYLPI-ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSP 454 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~ 454 (577)
..+. .|.+..-.+.++.-+++..+ ..++|| ......+..+-...|++..|..--+.... ..|....|..
T Consensus 297 ~ia~----lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-----~~pres~~lL 367 (531)
T COG3898 297 DIAL----LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR-----EAPRESAYLL 367 (531)
T ss_pred HHHH----HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-----hCchhhHHHH
Confidence 4443 33333333455555554432 125664 45677788888899999998877773333 6899999999
Q ss_pred HHHHHHHc-CChhHHHHHHHHHHHCCCCCC
Q 008097 455 LIKALCEK-GGFQSASMLLVQMVGKGILPD 483 (577)
Q Consensus 455 li~~~~~~-g~~~~A~~~~~~m~~~~~~p~ 483 (577)
|.+.-... |+-.++...+-+....+-.|+
T Consensus 368 lAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 368 LADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 99987766 999999999999886655553
No 180
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.23 E-value=0.00047 Score=51.09 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=45.5
Q ss_pred cCCHHHHHHHHHHHhhcCCC---ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008097 321 ENQQDEALEYLKQMEKLFPR---AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASE 397 (577)
Q Consensus 321 ~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 397 (577)
.|+++.|+.+++++.+..|+ ...+..+..+|.+.|++++|..++++ .+.+. .+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666666666666665442 22333356666677777777777766 22111 223334455677788888888888
Q ss_pred HHHH
Q 008097 398 LMKE 401 (577)
Q Consensus 398 ~~~~ 401 (577)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 181
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.19 E-value=0.0054 Score=56.24 Aligned_cols=100 Identities=16% Similarity=0.070 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKIDGISWNF----VTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
|...+..+.+.|++++|...|+.+.+. .|+. ..+..+...|...|++++|...|..+....++.+.....+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444444445556777777777776654 2332 3455566666667777777777776665533333333344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCC
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
...+...|+.++|..+|+++.+..|+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 55555666666666666666555554
No 182
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.19 E-value=0.24 Score=50.14 Aligned_cols=120 Identities=13% Similarity=0.073 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHh-hcCCCCCHhhHHH----H--HHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 008097 43 TPSLKIFNSILDVLVKE-DIDLARAFYRKKMM-ASGVQGDDYTYAI----L--MKGLCLTNRVGDGFKLLHVMKSRGVKP 114 (577)
Q Consensus 43 ~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~-~~~~~~~~~~~~~----l--l~~~~~~~~~~~a~~~~~~~~~~g~~~ 114 (577)
.|....|..+...-.+. .++-|...|- ... -.|++.--..-.. + ...-+--|.+++|++++-++-++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFV-rc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFV-RCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhh-hhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---
Confidence 47788898887766666 8888888887 332 2233210000000 0 011122588999999988876643
Q ss_pred CcchHHHHHHHHHhcCCHhHHHHHHHhccCC-----CceeHHHHHHHHHhcCChHHHHHHHHH
Q 008097 115 NSVIYNTLIHSLCKNGKVGRARSLMSDMEEP-----NDVTFSILICAYCKEENLVNALVLLEK 172 (577)
Q Consensus 115 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~ 172 (577)
..|.++.+.|++-+..++++.-... -...|+.+...++....+++|.+.|..
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466777888887777777653321 123566666666666666666655543
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.19 E-value=0.012 Score=59.70 Aligned_cols=89 Identities=11% Similarity=0.014 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 358 EDAKRCFDQMIEE-GGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEE 436 (577)
Q Consensus 358 ~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 436 (577)
..+.+...+.... ..+.+...|.++.......|++++|...+++..+.+ |+...|..+...+...|+.++|...+++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444443332 123345667777666667788888888888888743 7777788888888888888888888886
Q ss_pred hhcccCCCCCCCcccHH
Q 008097 437 DMRGIGRGSLPGSGHYS 453 (577)
Q Consensus 437 ~m~~~~~~~~p~~~~~~ 453 (577)
.+. +.|...+|.
T Consensus 479 A~~-----L~P~~pt~~ 490 (517)
T PRK10153 479 AFN-----LRPGENTLY 490 (517)
T ss_pred HHh-----cCCCCchHH
Confidence 666 667655554
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.18 E-value=0.042 Score=45.87 Aligned_cols=133 Identities=11% Similarity=0.060 Sum_probs=90.4
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHH
Q 008097 233 LPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYN 312 (577)
Q Consensus 233 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 312 (577)
.|++..--.|..+....|+..+|...|++...--..-|....-.+.++....+++..|...++.+-+..+... ++.+-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r-~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR-SPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC-CCCchH
Confidence 4666667777888888888888888888877554556777777777888888888888888887766432211 233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHH
Q 008097 313 SVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQ 366 (577)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 366 (577)
.+...+...|.+.+|..-|+......|+..........+.+.|+.+++..-+..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 556677777777777777777777666665555555556666666655443333
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.17 E-value=0.052 Score=45.36 Aligned_cols=101 Identities=14% Similarity=0.055 Sum_probs=44.9
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHH
Q 008097 374 PNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYS 453 (577)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~ 453 (577)
|++..--.+..+....|++.||...|++...--+.-|......+.++....+++.+|...+++.|+....+- ++..--
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r--~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR--SPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC--CCCchH
Confidence 444444444445555555555555555544322233444444455555555555555555553333100011 222333
Q ss_pred HHHHHHHHcCChhHHHHHHHHHH
Q 008097 454 PLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 454 ~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
.+...|...|+..+|...|+...
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHH
Confidence 34444555555555555555544
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.16 E-value=0.052 Score=54.07 Aligned_cols=217 Identities=18% Similarity=0.225 Sum_probs=103.8
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCC--ceeHHH-----HHHHHHhcCChHHHHHHHHHHHhC
Q 008097 104 LHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPN--DVTFSI-----LICAYCKEENLVNALVLLEKSFSF 176 (577)
Q Consensus 104 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~-----li~~~~~~~~~~~A~~~~~~m~~~ 176 (577)
++++.++|-.|+... +...++-.|++.+|.++|.+-...| ...|+- ...-|...|..++-..+.++-.+.
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W 699 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW 699 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Confidence 455666666565543 2334455566667766666544321 111111 122233344444333333221110
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHH
Q 008097 177 GFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSAL 256 (577)
Q Consensus 177 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 256 (577)
..|..-=......+...|+.++|..+. ...|-.+-+.++-..+... +..+...+..-+.+...+..|.
T Consensus 700 --Ar~~kePkaAAEmLiSaGe~~KAi~i~------~d~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAa 767 (1081)
T KOG1538|consen 700 --ARNIKEPKAAAEMLISAGEHVKAIEIC------GDHGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAA 767 (1081)
T ss_pred --hhhcCCcHHHHHHhhcccchhhhhhhh------hcccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHH
Confidence 000000012233444556666665553 1222223333332222222 3334444444444556667777
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008097 257 DVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK 336 (577)
Q Consensus 257 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (577)
++|..|-. ..++++.....+++++|..+-+...+. .+| +|.....-++...++++|.+.|
T Consensus 768 eIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~----~~d--Vy~pyaqwLAE~DrFeEAqkAf----- 827 (1081)
T KOG1538|consen 768 EIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF----KDD--VYMPYAQWLAENDRFEEAQKAF----- 827 (1081)
T ss_pred HHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc----ccc--ccchHHHHhhhhhhHHHHHHHH-----
Confidence 77776642 234566667777777777766655432 223 2333344455555666665444
Q ss_pred cCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 008097 337 LFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEE 370 (577)
Q Consensus 337 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 370 (577)
-+.|+-.+|.++++++...
T Consensus 828 ---------------hkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 828 ---------------HKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred ---------------HHhcchHHHHHHHHHhhhh
Confidence 4557788888888887653
No 187
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.12 E-value=0.0075 Score=51.66 Aligned_cols=64 Identities=17% Similarity=0.018 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008097 273 TYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK 336 (577)
Q Consensus 273 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (577)
.|..+...+...|++++|...|+......+.......+|..+...+...|++++|+..+++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444455555555555555555443111100112344444444444444444444444433
No 188
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.09 E-value=0.5 Score=49.47 Aligned_cols=193 Identities=12% Similarity=0.066 Sum_probs=127.7
Q ss_pred HHHHHHHH--hccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHH
Q 008097 14 FITVIRGL--GRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKG 90 (577)
Q Consensus 14 ~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~ 90 (577)
|...+.++ .|.|+.++|..+++.....+.. |..+...+-..|... +.++|..+|++ .. +.-|+..-...+..+
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~-~~--~~~P~eell~~lFma 119 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYER-AN--QKYPSEELLYHLFMA 119 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHH-HH--hhCCcHHHHHHHHHH
Confidence 33444444 5899999999888887654433 777888888888887 99999999993 32 345777777788889
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC----------HhHHHHHHHhccCCC--cee---HHHHHH
Q 008097 91 LCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGK----------VGRARSLMSDMEEPN--DVT---FSILIC 155 (577)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~--~~~---~~~li~ 155 (577)
|.|.+++.+-.++--++-+. ++.+.+.+=++++.+...-. ..-|.+.++.+.+.+ ..+ .-.-..
T Consensus 120 yvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~ 198 (932)
T KOG2053|consen 120 YVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLL 198 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHH
Confidence 99998888776666666553 45567777777777665422 234666666666533 111 112223
Q ss_pred HHHhcCChHHHHHHHH-HHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh
Q 008097 156 AYCKEENLVNALVLLE-KSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ 211 (577)
Q Consensus 156 ~~~~~~~~~~A~~~~~-~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 211 (577)
.+...|.+++|++++. ...+.-...+...-+.-+..+...+++.+..++-.++...
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 4556788999999884 3333333334445556667777788888777776665554
No 189
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.06 E-value=0.0054 Score=52.78 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=85.4
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 361 KRCFDQMIEEGGVPNVVIYDCLIHAYCQE-----ERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 361 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
...|++... -..|..+|..+++.|.+. |..+=....+..|.+.|+.-|..+|+.||+.+=+ |.+- -..+|+
T Consensus 34 ~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ 109 (228)
T PF06239_consen 34 EELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ 109 (228)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH
Confidence 445555422 246888888888888754 6778888888999999999999999999987765 3322 334455
Q ss_pred HhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchH
Q 008097 436 EDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTW 500 (577)
Q Consensus 436 ~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 500 (577)
.+- .-.| .+-+-|++++++|...|+.||..++..|++.+.+.+..
T Consensus 110 -~~F----~hyp---------------~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 110 -AEF----MHYP---------------RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred -HHh----ccCc---------------HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 333 0111 23466889999999999999999999999999887763
No 190
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.04 E-value=0.0092 Score=48.95 Aligned_cols=85 Identities=9% Similarity=-0.008 Sum_probs=36.4
Q ss_pred HHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHH
Q 008097 281 LCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVED 359 (577)
Q Consensus 281 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 359 (577)
+...|++++|..+|+.+...++. +..-|-.|..++-..|++++|+..+.......|+ +..+-.+...+.+.|+.+.
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~---~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAW---SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHH
Confidence 33445555555555544443111 2333444444444444444444444444443332 2233333334444444444
Q ss_pred HHHHHHHHH
Q 008097 360 AKRCFDQMI 368 (577)
Q Consensus 360 A~~~~~~~~ 368 (577)
|.+.|+..+
T Consensus 122 A~~aF~~Ai 130 (157)
T PRK15363 122 AIKALKAVV 130 (157)
T ss_pred HHHHHHHHH
Confidence 444444443
No 191
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.03 Score=52.77 Aligned_cols=153 Identities=16% Similarity=0.094 Sum_probs=96.5
Q ss_pred HHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHH--HHHHhcCCHHHHHHHHHHHhhcCCCceehHH-----------
Q 008097 280 GLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVL--YGLYRENQQDEALEYLKQMEKLFPRAVDRSL----------- 346 (577)
Q Consensus 280 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~----------- 346 (577)
.+.-.|+.++|..+-..+.+.+. ...+...+ .++.-.++.+.|...|++.....|+......
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~-----~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDA-----TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhcccchhHHHHHHHHHhccc-----chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHH
Confidence 34556777777776666655421 11222222 2334456677777777777777665433221
Q ss_pred --HHHHhhhcCCHHHHHHHHHHHHHc---CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHH
Q 008097 347 --KILGFCVDGNVEDAKRCFDQMIEE---GGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAS-TFNTVLSG 420 (577)
Q Consensus 347 --l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~ 420 (577)
-.....+.|.+..|.+.|.+.+.. +..|+...|-....+..+.|+..+|+.--++... +.|... .+..-..+
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c 330 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANC 330 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHH
Confidence 133456789999999999988874 3445566677777778889999999988887765 223211 12222334
Q ss_pred HHhcCCHHHHHHHHHHhhc
Q 008097 421 LCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 421 ~~~~g~~~~a~~~~~~~m~ 439 (577)
+...+++++|.+-|++.|+
T Consensus 331 ~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5567889999999997777
No 192
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.97 E-value=0.031 Score=49.43 Aligned_cols=165 Identities=13% Similarity=0.168 Sum_probs=73.2
Q ss_pred HHHhcCChhHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH----
Q 008097 245 SYCETGVLDSALDVFNDMKIDGI--SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL---- 318 (577)
Q Consensus 245 ~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~---- 318 (577)
.+...|++++|...|+.+..... +--....-.++.++.+.|+++.|...++...+..|..+- ..+...+.+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~--~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK--ADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT--HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc--hhhHHHHHHHHHHH
Confidence 34555666666666666554311 111223334555566666666666666665554322211 1111111111
Q ss_pred ---------HhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 008097 319 ---------YRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQE 389 (577)
Q Consensus 319 ---------~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 389 (577)
...+...+|...|+.+.+..|+. .-..+|......+... =...--.+..-|.+.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S-------------~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIKRYPNS-------------EYAEEAKKRLAELRNR----LAEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHHH-TTS-------------TTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCT
T ss_pred hCccchhcccChHHHHHHHHHHHHHHHHCcCc-------------hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHc
Confidence 11122345566666665555543 2333444333333321 011112245566667
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 008097 390 ERVREASELMKEMTGHGYLPIA----STFNTVLSGLCRQGNVGTA 430 (577)
Q Consensus 390 g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a 430 (577)
|.+..|..-++.+++. -|+. .....++.++.+.|..+.+
T Consensus 155 ~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp T-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred ccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 7777777777766653 2332 2345566666677766644
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.92 E-value=0.033 Score=44.01 Aligned_cols=90 Identities=20% Similarity=0.173 Sum_probs=48.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHh
Q 008097 243 ISSYCETGVLDSALDVFNDMKIDGISWN--FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYR 320 (577)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 320 (577)
..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++......++.+.+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3455566777777777777777665543 23444555666777777777777776665422211111122222234444
Q ss_pred cCCHHHHHHHHH
Q 008097 321 ENQQDEALEYLK 332 (577)
Q Consensus 321 ~g~~~~A~~~~~ 332 (577)
.|+.++|++.+-
T Consensus 88 ~gr~~eAl~~~l 99 (120)
T PF12688_consen 88 LGRPKEALEWLL 99 (120)
T ss_pred CCCHHHHHHHHH
Confidence 555555555443
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.051 Score=49.43 Aligned_cols=114 Identities=18% Similarity=0.101 Sum_probs=85.5
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhcccCCCCCC-C
Q 008097 373 VPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQG---NVGTALKLVEEDMRGIGRGSLP-G 448 (577)
Q Consensus 373 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~m~~~~~~~~p-~ 448 (577)
+-|...|-.|...|...|+++.|..-|.+..+.. .+|...+..+..++..+. ...++..+|++.+. ..| |
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~-----~D~~~ 226 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA-----LDPAN 226 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh-----cCCcc
Confidence 4578899999999999999999999999988632 345566666666664433 36678888986555 456 6
Q ss_pred cccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008097 449 SGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICL 494 (577)
Q Consensus 449 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 494 (577)
+.....|...+...|++++|...|+.|.+. -|....|..++..-
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~~ 270 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIERS 270 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHHH
Confidence 777888888899999999999999999854 44444677776553
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.89 E-value=0.0033 Score=44.41 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=10.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 008097 239 YNILISSYCETGVLDSALDVFNDMK 263 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~ 263 (577)
|..+...+...|++++|+..|++..
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai 30 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAI 30 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333344444444444444333
No 196
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.89 E-value=0.003 Score=43.99 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=8.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHH
Q 008097 274 YDTLIRGLCSGGRIDDGLKILQLM 297 (577)
Q Consensus 274 ~~~ll~~~~~~g~~~~a~~~~~~~ 297 (577)
+..+..++...|++++|...|+.+
T Consensus 34 ~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 34 WYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333333
No 197
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.058 Score=49.11 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=70.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC---CChHHHHHHHHHHHhccCCCCCCcccH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSG---GRIDDGLKILQLMEDSKEGSKGRISPY 311 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ 311 (577)
|...|-.|-..|...|+++.|..-|.+..+.- ++|...+..+..++... ....++.++|+++...++. ++.+.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~---~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA---NIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc---cHHHH
Confidence 67778888888888888888888887776642 33444444444443322 2345677777777765333 55566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHH
Q 008097 312 NSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKIL 349 (577)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~ 349 (577)
..|...+...|++.+|...|+.|.+..|....+..+|.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 66666777777777777777777776665555555443
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.84 E-value=0.0048 Score=43.54 Aligned_cols=63 Identities=19% Similarity=0.221 Sum_probs=39.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHhhc
Q 008097 375 NVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQG-NVGTALKLVEEDMR 439 (577)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~m~ 439 (577)
+..+|..+...+...|++++|+..|++.++. .| +...|..+..++...| ++++|++.+++.+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3456666666666777777777777776663 34 3345666666666666 56677666664443
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.82 E-value=0.0024 Score=44.95 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=6.6
Q ss_pred HHHHHHcCCChHHHHHHHH
Q 008097 277 LIRGLCSGGRIDDGLKILQ 295 (577)
Q Consensus 277 ll~~~~~~g~~~~a~~~~~ 295 (577)
+..+|.+.|++++|.++++
T Consensus 31 la~~~~~~g~~~~A~~~l~ 49 (68)
T PF14559_consen 31 LAQCYLKQGQYDEAEELLE 49 (68)
T ss_dssp HHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3333333333333333333
No 200
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.82 E-value=0.0048 Score=42.91 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=28.8
Q ss_pred HhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 350 GFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
.+.+.|++++|...|+++++.. +-+...|..+..++.+.|++++|...|+++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555555542 22445555555666666666666666666554
No 201
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.81 E-value=0.0046 Score=43.44 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=32.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008097 353 VDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTF 414 (577)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 414 (577)
+.|++++|.+.|+++.... +-+...+..+..+|.+.|++++|.++++++... .|+...+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHH
Confidence 3455566666666655542 225555556666666666666666666666653 3554333
No 202
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.80 E-value=0.025 Score=53.23 Aligned_cols=130 Identities=16% Similarity=0.103 Sum_probs=83.0
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhc---CC----CceehHHHHHHhhhcCCHHHHHHHHHHHHHc----CC-CCCHh
Q 008097 310 PYNSVLYGLYRENQQDEALEYLKQMEKL---FP----RAVDRSLKILGFCVDGNVEDAKRCFDQMIEE----GG-VPNVV 377 (577)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~ 377 (577)
.|..|...|.-.|+++.|+...+.-..+ .- ....++.+..++.-.|+++.|.+.|...... |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 3555556666677788877665543321 11 1233455666677778888888777765432 11 12345
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTG----HG-YLPIASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
+.-++...|.-...+++|+.++.+-.. .+ ..-....+.+|..++...|..++|+.+.++.++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 566778888888888999888876542 11 112345778888999999999999888775444
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.79 E-value=0.022 Score=52.23 Aligned_cols=86 Identities=12% Similarity=0.093 Sum_probs=41.0
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCce----ehHHHHHHhhhcCCHHHHHHHHHHHHHc--CCCCCHhhHHHHHHHHHhcCCH
Q 008097 319 YRENQQDEALEYLKQMEKLFPRAV----DRSLKILGFCVDGNVEDAKRCFDQMIEE--GGVPNVVIYDCLIHAYCQEERV 392 (577)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~ 392 (577)
.+.|++++|...|+.+.+..|+.. .+.-+...|...|++++|...|+.+.+. +.+.....+-.+...|...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344555555555555555444432 2333444445555555555555555443 1111123333344445555556
Q ss_pred HHHHHHHHHHHh
Q 008097 393 REASELMKEMTG 404 (577)
Q Consensus 393 ~~A~~~~~~m~~ 404 (577)
++|..+|++.++
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 666666555554
No 204
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.23 Score=47.09 Aligned_cols=275 Identities=11% Similarity=-0.065 Sum_probs=156.2
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHcCCChHHHHHH
Q 008097 215 GKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISW-NFVTYDTLIRGLCSGGRIDDGLKI 293 (577)
Q Consensus 215 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~ 293 (577)
..+.+|+..+....+..+. +..-|..-...+...|++++|.--.+.-.+. +| ......-.-+.+...++..+|.+.
T Consensus 63 k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i~A~~~ 139 (486)
T KOG0550|consen 63 KTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLIEAEEK 139 (486)
T ss_pred hhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHHHHHHH
Confidence 3344444445555554333 4555666666777778888877666554432 11 111222222223333333333322
Q ss_pred HH------------HHHhccC--CCCCCcccHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHH--HhhhcCC
Q 008097 294 LQ------------LMEDSKE--GSKGRISPYNSVL-YGLYRENQQDEALEYLKQMEKLFPRAVDRSLKIL--GFCVDGN 356 (577)
Q Consensus 294 ~~------------~~~~~~~--~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~ 356 (577)
++ .....-+ ..+|....|..+- .++.-.|+.++|.+.--...+..+.... ..++. .+--.++
T Consensus 140 ~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~-al~vrg~~~yy~~~ 218 (486)
T KOG0550|consen 140 LKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAE-ALYVRGLCLYYNDN 218 (486)
T ss_pred hhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhH-HHHhcccccccccc
Confidence 22 1111100 1112223333332 3456678888888887777765443222 22222 3445688
Q ss_pred HHHHHHHHHHHHHcCCCCCHhh-------------HHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHH
Q 008097 357 VEDAKRCFDQMIEEGGVPNVVI-------------YDCLIHAYCQEERVREASELMKEMTG---HGYLPIASTFNTVLSG 420 (577)
Q Consensus 357 ~~~A~~~~~~~~~~~~~p~~~~-------------~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~ll~~ 420 (577)
.+.|...|++.+.. .|+... |.-=..-..+.|++.+|.+.+.+.+. .+++|+...|.....+
T Consensus 219 ~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 219 ADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred hHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence 89999999998874 344332 22223344678999999999999985 2344555667777777
Q ss_pred HHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcc
Q 008097 421 LCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPD-YLTWNSLLICLSQQT 498 (577)
Q Consensus 421 ~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~ 498 (577)
..+.|+.++|+.--+..+. +.| =+..|..-..++.-.++|++|.+-+++..+..-.+. ..+|....-++.+..
T Consensus 297 ~~rLgrl~eaisdc~~Al~-----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALK-----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSK 371 (486)
T ss_pred hcccCCchhhhhhhhhhhh-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhh
Confidence 8899999999988884444 444 233444445556667889999999998875433332 356666666665444
Q ss_pred hH
Q 008097 499 TW 500 (577)
Q Consensus 499 ~~ 500 (577)
..
T Consensus 372 Rk 373 (486)
T KOG0550|consen 372 RK 373 (486)
T ss_pred hh
Confidence 43
No 205
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.74 E-value=0.55 Score=44.58 Aligned_cols=108 Identities=15% Similarity=0.110 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHH
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLY 316 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 316 (577)
.+.+..|.-+...|+...|.++-.+.. -|+..-|-..+.+++..+++++-.++... + -++.-|..++.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k------KsPIGyepFv~ 245 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K------KSPIGYEPFVE 245 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C------CCCCChHHHHH
Confidence 345555666777777777777766654 46777777888888888887776654321 1 14566777788
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHH
Q 008097 317 GLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCF 364 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 364 (577)
.|.+.|+..+|..+...+ .+..-+..|.++|++.+|.+.-
T Consensus 246 ~~~~~~~~~eA~~yI~k~--------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPKI--------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHCCCHHHHHHHHHhC--------ChHHHHHHHHHCCCHHHHHHHH
Confidence 888888777777776552 2245566677777777665543
No 206
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.58 E-value=0.16 Score=44.94 Aligned_cols=65 Identities=17% Similarity=0.292 Sum_probs=43.1
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 008097 277 LIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA 341 (577)
Q Consensus 277 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 341 (577)
....+...|++.+|.+.|+.+...-++.+-.....-.++.++.+.|+++.|...+++..+..|+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 33445667888888888888887654444344456667777888888888888888887776654
No 207
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.38 E-value=0.26 Score=40.51 Aligned_cols=126 Identities=10% Similarity=0.140 Sum_probs=85.1
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHh
Q 008097 14 FITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDDYTYAILMKGLCL 93 (577)
Q Consensus 14 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 93 (577)
...++..+...+.+..+...++.+.+.+. .+....|.++..|++.+....++.+. . ..+.+....+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~~~ll~~l~-~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDPQKEIERLD-N------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCHHHHHHHHH-h------ccccCCHHHHHHHHHH
Confidence 35677777778889999999999877663 67778899999998777677766665 1 2344556667888888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc-CCHhHHHHHHHhccCCCceeHHHHHHHHH
Q 008097 94 TNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKN-GKVGRARSLMSDMEEPNDVTFSILICAYC 158 (577)
Q Consensus 94 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 158 (577)
.+-++++.-++.++.. +...+..+... ++++.|.+.+.+- .+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 8877777777766522 22334444444 6777777777663 24446666665554
No 208
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.35 E-value=0.23 Score=40.91 Aligned_cols=127 Identities=16% Similarity=0.152 Sum_probs=86.6
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008097 344 RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCR 423 (577)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 423 (577)
...++..+...+........++.+...+. .+....|.++..|++.+. .+.++.++. .++......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 34556666666777777777777777653 577788899999987643 445555542 1334445567888999
Q ss_pred cCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008097 424 QGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEK-GGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQ 496 (577)
Q Consensus 424 ~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 496 (577)
.+.++++..++. .+. -|...++.+... ++++.|.+++++-. ++..|..++..|..
T Consensus 82 ~~l~~~~~~l~~-k~~-----------~~~~Al~~~l~~~~d~~~a~~~~~~~~------~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYK-KDG-----------NFKDAIVTLIEHLGNYEKAIEYFVKQN------NPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHH-hhc-----------CHHHHHHHHHHcccCHHHHHHHHHhCC------CHHHHHHHHHHHHc
Confidence 999998888888 443 244455556655 88888888887631 66688888877643
No 209
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.34 E-value=0.061 Score=42.96 Aligned_cols=56 Identities=18% Similarity=0.077 Sum_probs=43.7
Q ss_pred CCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhc
Q 008097 442 GRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVG-KGILPDYLTWNSLLICLSQQ 497 (577)
Q Consensus 442 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~ 497 (577)
.....|+..+..+++.+|+..|++..|.++++...+ -+++-+..+|..|+.-+...
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 445678888889999999999999999998888774 35666678898888776443
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.28 E-value=0.052 Score=45.14 Aligned_cols=64 Identities=20% Similarity=0.237 Sum_probs=30.1
Q ss_pred HHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCHHH
Q 008097 349 LGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMT-----GHGYLPIAST 413 (577)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~ 413 (577)
..+...|+++.|..+.+.+... .+-|...|..+|.+|...|+..+|++.|+++. +.|+.|+..+
T Consensus 70 ~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 70 EALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3344555555555555555554 22345555556666666666666655555543 2355555443
No 211
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.27 E-value=1.2 Score=43.00 Aligned_cols=83 Identities=8% Similarity=0.017 Sum_probs=65.1
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC--CCceeHHHHHH
Q 008097 78 QGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--PNDVTFSILIC 155 (577)
Q Consensus 78 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 155 (577)
+.|..+|-.|+.-+...+..++..+++++|..- ++--..+|..-+++-....+++..+.+|.+... -+...|...+.
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl~ 117 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLE 117 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHHH
Confidence 457889999999999999999999999999763 344556787778777778899999999998775 46777887776
Q ss_pred HHHhcC
Q 008097 156 AYCKEE 161 (577)
Q Consensus 156 ~~~~~~ 161 (577)
.--+.+
T Consensus 118 YIRr~n 123 (660)
T COG5107 118 YIRRVN 123 (660)
T ss_pred HHHhhC
Confidence 554433
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.08 E-value=0.035 Score=39.53 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=23.2
Q ss_pred HHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 008097 281 LCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFP 339 (577)
Q Consensus 281 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 339 (577)
|.+.+++++|.++++.+...+|. +...|.....++.+.|++++|.+.|+...+..|
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD---DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34444444444444444443211 333344444444444444444444444444333
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.99 E-value=0.05 Score=38.72 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=31.9
Q ss_pred HhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 350 GFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
.|.+.+++++|.++++.+...+ +.+...|......|.+.|++++|.+.|++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455556666666666665542 22455556666666666666666666666665
No 214
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=2.4 Score=43.76 Aligned_cols=100 Identities=15% Similarity=0.132 Sum_probs=59.4
Q ss_pred CCCCCCCHHHHH-----HHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhc
Q 008097 4 SIQSPPDESIFI-----TVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE---DIDLARAFYRKKMMAS 75 (577)
Q Consensus 4 ~~g~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~a~~~~~~~m~~~ 75 (577)
+.|+|.+...|. .+++-+...+.+..|+++-..+...-.. +...+.....-+.+. .-+++++..++.+...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 457777776665 4566667778888888887777421111 134555555666654 2344455444233221
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 008097 76 GVQGDDYTYAILMKGLCLTNRVGDGFKLLHV 106 (577)
Q Consensus 76 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 106 (577)
. .+...|..+.+.....|+.+-|..+++.
T Consensus 504 -~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 504 -L-TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred -C-CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 2 3445577777777788888888777654
No 215
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.94 E-value=0.097 Score=41.81 Aligned_cols=86 Identities=14% Similarity=0.106 Sum_probs=60.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHH---------------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMT---------------GHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRG 440 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---------------~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~ 440 (577)
..++..++.++++.|+.+....+++..- .....|+..+..+++.+|+..|++..|+++++.-+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~- 80 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR- 80 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH-
Confidence 3445555556666666555555554331 234568899999999999999999999999994444
Q ss_pred cCCCCCCCcccHHHHHHHHHHcC
Q 008097 441 IGRGSLPGSGHYSPLIKALCEKG 463 (577)
Q Consensus 441 ~~~~~~p~~~~~~~li~~~~~~g 463 (577)
.++++-+...|..|+.-....-
T Consensus 81 -~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 81 -KYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred -HcCCCCCHHHHHHHHHHHHHhc
Confidence 7787768888888887554443
No 216
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.91 E-value=1.8 Score=41.94 Aligned_cols=402 Identities=15% Similarity=0.136 Sum_probs=212.7
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH---hcCHHHHHHHHHHHHhhc--CCCC--------
Q 008097 13 IFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLV---KEDIDLARAFYRKKMMAS--GVQG-------- 79 (577)
Q Consensus 13 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---~~~~~~a~~~~~~~m~~~--~~~~-------- 79 (577)
..+.++++|... +.+..........+. .| ...|-.+..++. +..+..|++.+. .-... +..|
T Consensus 48 l~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~~~kal~~ls-~w~~~~~~~~~~~Ld~ni~ 122 (549)
T PF07079_consen 48 LGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQKEYRKALQALS-VWKEQIKGTESPWLDTNIQ 122 (549)
T ss_pred HhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhhhHHHHHHHHH-HHHhhhcccccchhhhhHH
Confidence 345677777753 555555555555442 22 223444444332 237888888776 33222 2222
Q ss_pred ----CHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC----CCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHH
Q 008097 80 ----DDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGV----KPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFS 151 (577)
Q Consensus 80 ----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 151 (577)
|-..=+..+.++...|++.+++.+++++...=+ .-+..+|+.++-++.++=-++.- +.+...=..-|-
T Consensus 123 ~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~----e~~s~dl~pdyY 198 (549)
T PF07079_consen 123 QLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELK----ESMSSDLYPDYY 198 (549)
T ss_pred HHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHH----HhcccccChHHH
Confidence 122224556777899999999999998876533 36888999888777764222111 111111111223
Q ss_pred HHHHHHHhc-------------------------------CChHHHHHHHHHHHhCCCCCCHhh-HHHHHHHHHhcCCHh
Q 008097 152 ILICAYCKE-------------------------------ENLVNALVLLEKSFSFGFVPDVVT-ITKVLELLCSVGRVM 199 (577)
Q Consensus 152 ~li~~~~~~-------------------------------~~~~~A~~~~~~m~~~g~~~~~~~-~~~ll~~~~~~g~~~ 199 (577)
-||..|.+. .+..--.++++.-.+.-+.|+-.. ...+...+.+ +.+
T Consensus 199 emilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e 276 (549)
T PF07079_consen 199 EMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPE 276 (549)
T ss_pred HHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChH
Confidence 333333221 111111222222233334454322 2222222222 334
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHH-----
Q 008097 200 DAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTY----- 274 (577)
Q Consensus 200 ~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~----- 274 (577)
++..+-+.+... -.+.+.+. =+.++..++....+.++...|.+.+.-+.-. .|+...-
T Consensus 277 ~~~~~ce~ia~~-----------~i~~Lke~----li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Klll 339 (549)
T PF07079_consen 277 QVGHFCEAIASS-----------KIEKLKEE----LIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLL 339 (549)
T ss_pred HHHHHHHHHHHH-----------hHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhc
Confidence 433332222110 01112221 3456888888899999999998888776643 3333211
Q ss_pred --HHHHHHHHc----CCChHHHHHHHHHHHhccCCCCCCcccHHHHHH---HHHhcCC-HHHHHHHHHHHhhcCCCcee-
Q 008097 275 --DTLIRGLCS----GGRIDDGLKILQLMEDSKEGSKGRISPYNSVLY---GLYRENQ-QDEALEYLKQMEKLFPRAVD- 343 (577)
Q Consensus 275 --~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~---~~~~~g~-~~~A~~~~~~~~~~~p~~~~- 343 (577)
..+-+..+. .-++..=..+++.+...+.+ ......-|+. -+-+.|. -++|+.+++.+.+..|....
T Consensus 340 s~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD---rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec 416 (549)
T PF07079_consen 340 SPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID---RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIEC 416 (549)
T ss_pred CHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc---HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHH
Confidence 112222221 11233334455555443111 1111222332 2444555 88899999999886553332
Q ss_pred hHHHH----HHhh---hcCCHHHHHHHHHHHHHcCCCCCHh----hHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCC
Q 008097 344 RSLKI----LGFC---VDGNVEDAKRCFDQMIEEGGVPNVV----IYDCLIHA--YCQEERVREASELMKEMTGHGYLPI 410 (577)
Q Consensus 344 ~~~l~----~~~~---~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~ 410 (577)
-+.+. ..|. +...+.+-..+-+-+.+.|++|-.+ .-|.+.++ +..+|++.++.-.-..+.+ +.|+
T Consensus 417 ~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS 494 (549)
T PF07079_consen 417 ENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPS 494 (549)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCc
Confidence 22221 2332 2234445555555566668876443 45555544 4568999999877666665 7899
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHH
Q 008097 411 ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPL 455 (577)
Q Consensus 411 ~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~l 455 (577)
+.+|..+.-......++++|+.++. . ++|+...++.=
T Consensus 495 ~~~~RLlGl~l~e~k~Y~eA~~~l~-~-------LP~n~~~~dsk 531 (549)
T PF07079_consen 495 PQAYRLLGLCLMENKRYQEAWEYLQ-K-------LPPNERMRDSK 531 (549)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH-h-------CCCchhhHHHH
Confidence 9999988877888999999999999 3 45777776653
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.73 E-value=0.035 Score=40.20 Aligned_cols=62 Identities=23% Similarity=0.261 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGH--GYL---PI-ASTFNTVLSGLCRQGNVGTALKLVEEDM 438 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m 438 (577)
.+|+.+...|...|++++|++.|++..+. ... |+ ..++..+...+...|++++|++++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777777888888888877776631 011 22 3356666677777777777777777443
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=1.4 Score=39.30 Aligned_cols=147 Identities=13% Similarity=0.010 Sum_probs=85.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHH
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYG 317 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 317 (577)
..+.++..+...|.+.-....+++..+...+.++...+.+.+.-.+.|+.+.|...|+...+. ..+.+-...+.++..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~--~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV--TQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--HhhhhccchhHHHHh
Confidence 345566666667777777777777777655556677777777777777777777777766654 222222222222211
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008097 318 LYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASE 397 (577)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 397 (577)
.....|.-.+++..|...|+++...+ +.|++.-|.-.-+..-.|+...|++
T Consensus 257 ----------------------------n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK 307 (366)
T KOG2796|consen 257 ----------------------------NSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALK 307 (366)
T ss_pred ----------------------------hhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHH
Confidence 01112334456666666666666542 2344444544444445677888888
Q ss_pred HHHHHHhCCCCCCHHHHHHH
Q 008097 398 LMKEMTGHGYLPIASTFNTV 417 (577)
Q Consensus 398 ~~~~m~~~g~~p~~~~~~~l 417 (577)
.++.|.. ..|.+.+-+++
T Consensus 308 ~~e~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 308 QLEAMVQ--QDPRHYLHESV 325 (366)
T ss_pred HHHHHhc--cCCccchhhhH
Confidence 8888876 34655554443
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=1.5 Score=39.28 Aligned_cols=235 Identities=11% Similarity=0.045 Sum_probs=130.3
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHH-HhcCC-HhHHHHHH-HhccCCCceeHHHHHHHHHh
Q 008097 83 TYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSL-CKNGK-VGRARSLM-SDMEEPNDVTFSILICAYCK 159 (577)
Q Consensus 83 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~-~~~g~-~~~A~~~~-~~~~~~~~~~~~~li~~~~~ 159 (577)
.|+.-+.++.+.+..++|..-++..-+.. .||.+ |...=..| -+.|. +.-+.+++ .+++......|+.|++.+.-
T Consensus 71 ~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 71 LWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 35556677777777777766555554332 11211 11000001 11121 22233332 23333445567777776655
Q ss_pred cCChHHHHHHHHHHHhCCCCCC----------HhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHH
Q 008097 160 EENLVNALVLLEKSFSFGFVPD----------VVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMER 229 (577)
Q Consensus 160 ~~~~~~A~~~~~~m~~~g~~~~----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~ 229 (577)
....++-+..++. +..|. ....+.++..+...|.+.-. ...+.+..+
T Consensus 149 ~~~V~~ii~~~e~----~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS-------------------~d~~~~vi~ 205 (366)
T KOG2796|consen 149 KTVVSKILANLEQ----GLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLS-------------------VDAYHSVIK 205 (366)
T ss_pred HHHHHHHHHHHHh----ccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhh-------------------HHHHHHHHH
Confidence 4444444333332 11111 12222333333334444333 344566666
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHH-----HHHHcCCChHHHHHHHHHHHhccCCC
Q 008097 230 KGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLI-----RGLCSGGRIDDGLKILQLMEDSKEGS 304 (577)
Q Consensus 230 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll-----~~~~~~g~~~~a~~~~~~~~~~~~~~ 304 (577)
...+.++.....|.+.-.+.|+.+.|...|++..+..-..|..+.+.++ ..|.-.+++.+|.+.+.++...++.
T Consensus 206 ~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~- 284 (366)
T KOG2796|consen 206 YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR- 284 (366)
T ss_pred hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-
Confidence 6656678888889999999999999999999887654444544444433 4456677888899989888876322
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehH
Q 008097 305 KGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRS 345 (577)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 345 (577)
++...|.-.-+..-.|+..+|++..+.|.+..|...+-+
T Consensus 285 --~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 285 --NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred --chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 444444433344446778888888888877777655544
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.63 E-value=2.1 Score=40.63 Aligned_cols=293 Identities=17% Similarity=0.132 Sum_probs=172.4
Q ss_pred HHHHHHHHH--hcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHH--hcCCHhHHHHHHHhccCCCceeHHH----HHH
Q 008097 84 YAILMKGLC--LTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLC--KNGKVGRARSLMSDMEEPNDVTFSI----LIC 155 (577)
Q Consensus 84 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~----li~ 155 (577)
|.+|-.++. -.|+-..|.++-.+-.+. +..|....-.|+.+-. -.|+++.|.+-|+.|.. |..+--. |.-
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyl 162 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYL 162 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHH
Confidence 555555554 467777787776655432 3345555555554433 35999999999999974 2222222 222
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCC
Q 008097 156 AYCKEENLVNALVLLEKSFSFGFVPD-VVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLP 234 (577)
Q Consensus 156 ~~~~~~~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p 234 (577)
.--+.|..+.|...-++.-.. .|. ...+..++...+..|+++.|+++.+.-... .-+.+
T Consensus 163 eAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~------------------~vie~ 222 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAA------------------KVIEK 222 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH------------------Hhhch
Confidence 234668888888877776543 333 467778888888999999998887654332 01111
Q ss_pred Chh--hHHHHHHHHH---hcCChhHHHHHHHHHHHCCCCcCHHHH-HHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCc
Q 008097 235 NVD--TYNILISSYC---ETGVLDSALDVFNDMKIDGISWNFVTY-DTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRI 308 (577)
Q Consensus 235 ~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 308 (577)
++. .-..|+.+-. -..+...|...-.+..+. .||..-- ..-..++.+.|++.++-.+++.+-+. ...|
T Consensus 223 ~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP-- 296 (531)
T COG3898 223 DVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHP-- 296 (531)
T ss_pred hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCCh--
Confidence 211 1122222211 123455555555554443 5554322 22345677888888888888888765 2222
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHH---HhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 008097 309 SPYNSVLYGLYRENQQDEALEYLKQ---MEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIH 384 (577)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~---~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 384 (577)
.. ..+..+.+.|+. ++.-+++ +....|+. .+..++..+-...|++..|..--+.... ..|....|..|.+
T Consensus 297 ~i--a~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAd 370 (531)
T COG3898 297 DI--ALLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLAD 370 (531)
T ss_pred HH--HHHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHH
Confidence 22 233334455543 2333333 33345544 4445556666777888887777666665 4688888888887
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCCC
Q 008097 385 AYCQE-ERVREASELMKEMTGHGYLPI 410 (577)
Q Consensus 385 ~~~~~-g~~~~A~~~~~~m~~~g~~p~ 410 (577)
.-... |+-.++...+.+..+.--.|+
T Consensus 371 IeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 371 IEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 76554 899999999988887544453
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.58 E-value=0.13 Score=50.04 Aligned_cols=62 Identities=21% Similarity=0.207 Sum_probs=40.4
Q ss_pred eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008097 342 VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNV----VIYDCLIHAYCQEERVREASELMKEMTGH 405 (577)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 405 (577)
..++.+..+|.+.|++++|...|++.++. .|+. .+|..+..+|...|+.++|++.+++.++.
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34566666677777777777777776663 3442 24666777777777777777777776653
No 222
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.46 E-value=0.52 Score=39.07 Aligned_cols=60 Identities=20% Similarity=0.340 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLME 298 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 298 (577)
....++..+...|++++|..+.+.+.... +.|...|..+|.+|...|+...|.+.|+.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34455556666777777777777766543 4466667777777777777777777766654
No 223
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.41 E-value=0.23 Score=44.76 Aligned_cols=103 Identities=20% Similarity=0.182 Sum_probs=61.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGIS--WNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVL 315 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 315 (577)
.|+.-+. +.+.|++..|...|...++.... -....+--|..++...|++++|..+|..+.+..+..+--+...-.|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3555544 34555677777777777664211 11223344667777777777777777777665444433445555666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCc
Q 008097 316 YGLYRENQQDEALEYLKQMEKLFPRA 341 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~ 341 (577)
.+..+.|+.++|...|++..+..|+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 66667777777777777776666653
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.39 E-value=2.8 Score=40.45 Aligned_cols=73 Identities=16% Similarity=0.054 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHhccCC-Cc-e--eH---HHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 008097 120 NTLIHSLCKNGKVGRARSLMSDMEEP-ND-V--TF---SILICAYCK---EENLVNALVLLEKSFSFGFVPDVVTITKVL 189 (577)
Q Consensus 120 ~~li~~~~~~g~~~~A~~~~~~~~~~-~~-~--~~---~~li~~~~~---~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll 189 (577)
..++-.|-...+++...++.+.+... +. . +- ....-++.+ .|+.++|++++..+......+++.||..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34455688888999999999988763 11 1 11 122334455 788899999998866666677888887777
Q ss_pred HHH
Q 008097 190 ELL 192 (577)
Q Consensus 190 ~~~ 192 (577)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 665
No 225
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.25 E-value=2.6 Score=39.39 Aligned_cols=96 Identities=18% Similarity=0.102 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC--------CCCcCH-----HHHHHHHHHHHcCCChH---HHHHHHHHHHhccC
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKID--------GISWNF-----VTYDTLIRGLCSGGRID---DGLKILQLMEDSKE 302 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~~~~-----~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~ 302 (577)
|+.-.+.+.+..+++.|...+++..+. ...|+. .++..++.+|...+..+ +|.++++.+...
T Consensus 39 yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-- 116 (278)
T PF08631_consen 39 YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-- 116 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--
Confidence 444444444433677776666654332 112222 34555666666666544 344444444332
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 008097 303 GSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKL 337 (577)
Q Consensus 303 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 337 (577)
.+-.+.++..-+..+.+.++.+.+.+.+.+|...
T Consensus 117 -~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 117 -YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred -CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 1112333444455555566666666666666554
No 226
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.24 E-value=1.2 Score=35.27 Aligned_cols=83 Identities=11% Similarity=0.144 Sum_probs=53.5
Q ss_pred hhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHH
Q 008097 212 GRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGL 291 (577)
Q Consensus 212 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 291 (577)
..||++.....-+-.+-. +.......++.....|+-|+-.+++.++.+.+ .+++.....+..+|.+.|+..++-
T Consensus 67 s~C~NlKrVi~C~~~~n~-----~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ 140 (161)
T PF09205_consen 67 SKCGNLKRVIECYAKRNK-----LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREAN 140 (161)
T ss_dssp GG-S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHH
T ss_pred hhhcchHHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHH
Confidence 455555555544433322 44556777888888999998888888887533 677788888889999999999999
Q ss_pred HHHHHHHhc
Q 008097 292 KILQLMEDS 300 (577)
Q Consensus 292 ~~~~~~~~~ 300 (577)
+++.+.-+.
T Consensus 141 ell~~ACek 149 (161)
T PF09205_consen 141 ELLKEACEK 149 (161)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 998888776
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.22 E-value=0.042 Score=39.78 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=23.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
..+++.+...|...|++++|++.+++..+
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55777888888888888888888887653
No 228
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.04 E-value=0.13 Score=46.17 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=55.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC----------------CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008097 354 DGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE----------------RVREASELMKEMTGHGYLPIASTFNTV 417 (577)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----------------~~~~A~~~~~~m~~~g~~p~~~~~~~l 417 (577)
.+.++-....+..|.+.|+..|..+|+.|+..+=+.. +-+=+++++++|...|+.||..+-..|
T Consensus 85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~l 164 (406)
T KOG3941|consen 85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDIL 164 (406)
T ss_pred cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHH
Confidence 4566666777788888888889999988888764432 223477888888888888888888888
Q ss_pred HHHHHhcCCH
Q 008097 418 LSGLCRQGNV 427 (577)
Q Consensus 418 l~~~~~~g~~ 427 (577)
++++.+.+-.
T Consensus 165 vn~FGr~~~p 174 (406)
T KOG3941|consen 165 VNAFGRWNFP 174 (406)
T ss_pred HHHhcccccc
Confidence 8888777653
No 229
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.93 E-value=0.46 Score=47.31 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=75.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHh----hhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 008097 184 TITKVLELLCSVGRVMDAVEILEESGEQ----GRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVF 259 (577)
Q Consensus 184 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 259 (577)
-.+.++.-+.+.|..+.|+++...-..+ .++|+++.|.++.++ .++...|..|.+...+.|+++-|.+.|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~ 370 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECY 370 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3555555556666666666554332222 345555555443322 236668888888888888888888888
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 008097 260 NDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQM 334 (577)
Q Consensus 260 ~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 334 (577)
.+... +..|+-.|.-.|+.+.-.++.+..... + -++....++...|+.++..+++.+.
T Consensus 371 ~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~--~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 371 QKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER--G------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT--T-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc--c------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 77642 445555677778877777776666554 2 3566666666777777777666544
No 230
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.89 E-value=2.7 Score=37.69 Aligned_cols=66 Identities=15% Similarity=0.181 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 008097 200 DAVEILEESGEQGRLGKVKGGCRFLKEMERKGCL--PNVDTYNILISSYCETGVLDSALDVFNDMKID 265 (577)
Q Consensus 200 ~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 265 (577)
.+.+++++.......|++++|.+.|+.+..+.+- -...+--.++-++.+.+++++|+..+++..+.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4556666666666667777777777776654211 12233444455566677777777777666554
No 231
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.88 E-value=0.4 Score=47.78 Aligned_cols=105 Identities=18% Similarity=0.158 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhh
Q 008097 274 YDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCV 353 (577)
Q Consensus 274 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 353 (577)
...++.-+-+.|..+.|.++...-..+ .....+.|+++.|.++.++. ++...|..|.....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~r--------------FeLAl~lg~L~~A~~~a~~~----~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHR--------------FELALQLGNLDIALEIAKEL----DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHH--------------HHHHHHCT-HHHHHHHCCCC----STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHH--------------hHHHHhcCCHHHHHHHHHhc----CcHHHHHHHHHHHHH
Confidence 444455555555555555544332211 23334444444444332222 123344444444444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008097 354 DGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGH 405 (577)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 405 (577)
+|+++-|.+.|.+... |..++-.|.-.|+.+.-.++.+.....
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 4444444444444321 334444444455544444444444433
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.87 E-value=0.37 Score=46.95 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008097 270 NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK 336 (577)
Q Consensus 270 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (577)
+...++.+..+|.+.|++++|...|+...+.++....-..+|..+..+|.+.|+.++|++.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455666666666666666666666665554222100002356666666666666666666666555
No 233
>PRK15331 chaperone protein SicA; Provisional
Probab=94.86 E-value=1.9 Score=35.84 Aligned_cols=86 Identities=12% Similarity=0.038 Sum_probs=57.0
Q ss_pred HHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCceehHHHHHHhhhcCCHHH
Q 008097 281 LCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLF-PRAVDRSLKILGFCVDGNVED 359 (577)
Q Consensus 281 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~ 359 (577)
+...|++++|..+|.-+...++. +..-|..|..++-..+++++|...|....... .|+.........|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~---n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY---NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 44568888888888877665322 44456667777777777888877777665532 234445555666677777777
Q ss_pred HHHHHHHHHH
Q 008097 360 AKRCFDQMIE 369 (577)
Q Consensus 360 A~~~~~~~~~ 369 (577)
|+..|+....
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777777766
No 234
>PRK15331 chaperone protein SicA; Provisional
Probab=94.84 E-value=0.34 Score=40.20 Aligned_cols=88 Identities=11% Similarity=0.002 Sum_probs=65.2
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCH
Q 008097 245 SYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQ 324 (577)
Q Consensus 245 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 324 (577)
-+...|++++|..+|+-+...+ +-|..-|..|...|-..+++++|...|......+. .|+.+.--...++...|+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~---~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK---NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---CCCCccchHHHHHHHhCCH
Confidence 3456788899988888877654 33555566677777777888899888887765522 2566666778888888999
Q ss_pred HHHHHHHHHHhh
Q 008097 325 DEALEYLKQMEK 336 (577)
Q Consensus 325 ~~A~~~~~~~~~ 336 (577)
+.|...|.....
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999888888766
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.79 E-value=1.3 Score=44.98 Aligned_cols=159 Identities=19% Similarity=0.148 Sum_probs=93.3
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCc-----ccHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCceehH
Q 008097 275 DTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRI-----SPYNSVLYGLYR----ENQQDEALEYLKQMEKLFPRAVDRS 345 (577)
Q Consensus 275 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~ 345 (577)
..++...+=.|+-+.+.+.+....+. .++.... ..|..++..++. ....+.|.+++..+.+..|+...|.
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 34445555567777777776665442 1211111 113333333332 4567788888888888888876665
Q ss_pred HH-HHHhhhcCCHHHHHHHHHHHHHcC-C--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008097 346 LK-ILGFCVDGNVEDAKRCFDQMIEEG-G--VPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGL 421 (577)
Q Consensus 346 ~l-~~~~~~~g~~~~A~~~~~~~~~~~-~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 421 (577)
.. ...+...|++++|.+.|++..... . +.....+--+.-.+....++++|.+.|.++.+.. .-...+|.-+.-+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 44 345667788888888888765320 0 1112233344555677788899999988888643 23344444444443
Q ss_pred -HhcCCH-------HHHHHHHH
Q 008097 422 -CRQGNV-------GTALKLVE 435 (577)
Q Consensus 422 -~~~g~~-------~~a~~~~~ 435 (577)
...|+. ++|.++|.
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~ 371 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFR 371 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHH
Confidence 456666 77777776
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.7 Score=44.05 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHH
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLI 456 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li 456 (577)
+++.+..+|.+.+++.+|++.-.+.+..+ ++|....--=..+|...|+++.|+..|++.++ +.| |...-+-++
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k-----~~P~Nka~~~el~ 332 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK-----LEPSNKAARAELI 332 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH-----hCCCcHHHHHHHH
Confidence 44555556666666666666666666532 23444444445566666666666666664333 455 333334444
Q ss_pred HHHHHcCChhH-HHHHHHHHH
Q 008097 457 KALCEKGGFQS-ASMLLVQMV 476 (577)
Q Consensus 457 ~~~~~~g~~~~-A~~~~~~m~ 476 (577)
.+-.+.....+ ..++|..|.
T Consensus 333 ~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 333 KLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 44444333322 245555554
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.65 E-value=0.36 Score=43.54 Aligned_cols=97 Identities=15% Similarity=0.178 Sum_probs=65.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCce----ehHHHH
Q 008097 273 TYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAV----DRSLKI 348 (577)
Q Consensus 273 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~l~ 348 (577)
.|+.-++.| +.|++..|...|....+.-|+..-....+-.|..++...|++++|..+|..+.+..|+.. ...-+.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 566666644 567899999999888887555444555566788888888888888888888877655432 233344
Q ss_pred HHhhhcCCHHHHHHHHHHHHHc
Q 008097 349 LGFCVDGNVEDAKRCFDQMIEE 370 (577)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~~~~ 370 (577)
......|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 4455666666666666666654
No 238
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.64 E-value=0.53 Score=44.72 Aligned_cols=132 Identities=13% Similarity=0.008 Sum_probs=85.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhc--cCCCC-CCcccHHHHHHHHHhcCCHHHHHHHHHHHhh----c---CCCce
Q 008097 273 TYDTLIRGLCSGGRIDDGLKILQLMEDS--KEGSK-GRISPYNSVLYGLYRENQQDEALEYLKQMEK----L---FPRAV 342 (577)
Q Consensus 273 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~---~p~~~ 342 (577)
.|..|-..|.-.|+++.|+...+.-... ..|.+ .....+..+..++.-.|+++.|.+.++.... + .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555666666678889888776543221 11211 1123466777888888999999888876543 2 12334
Q ss_pred ehHHHHHHhhhcCCHHHHHHHHHHHHHc-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 343 DRSLKILGFCVDGNVEDAKRCFDQMIEE-----GGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+..++...|.-..+++.|+.++.+-... ...-...++-++..+|...|..++|+.+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4566777777777888888888764432 1112345677888999999999999888776553
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=1.3 Score=42.33 Aligned_cols=62 Identities=15% Similarity=-0.031 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
+++.+..+|.+.+++..|+..-...+..+ ++|...+--=..+|...|+++.|+..|+.+.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44555566666666666666666666553 445555555556666666666666666666654
No 240
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.61 E-value=2.4 Score=37.56 Aligned_cols=139 Identities=9% Similarity=0.000 Sum_probs=71.5
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh---CC--CCCCHHHHHHHHHHH
Q 008097 347 KILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG---HG--YLPIASTFNTVLSGL 421 (577)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g--~~p~~~~~~~ll~~~ 421 (577)
....|..+|.++.|-..+++.-+. ....++++|++++++... .+ .+.-...+..+-+.+
T Consensus 97 As~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 345677777777766666655432 122344555555554331 11 001112344445556
Q ss_pred HhcCCHHHHHHHHHHhhcc-cCCCCCCC-cccHHHHHHHHHHcCChhHHHHHHHHHHHCC-C--CCCHHHHHHHHHHHHh
Q 008097 422 CRQGNVGTALKLVEEDMRG-IGRGSLPG-SGHYSPLIKALCEKGGFQSASMLLVQMVGKG-I--LPDYLTWNSLLICLSQ 496 (577)
Q Consensus 422 ~~~g~~~~a~~~~~~~m~~-~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~--~p~~~~~~~ll~~~~~ 496 (577)
.+..++++|-..|.+...- ....-.|+ -..|...|-.+.-..++..|...++.--.-+ + .-|..+...||.+|-
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd- 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD- 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-
Confidence 6677777776666532210 00001111 1235555666677778888988888843211 1 234567888888874
Q ss_pred cchHHH
Q 008097 497 QTTWLL 502 (577)
Q Consensus 497 ~~~~~~ 502 (577)
.|+.+.
T Consensus 240 ~gD~E~ 245 (308)
T KOG1585|consen 240 EGDIEE 245 (308)
T ss_pred cCCHHH
Confidence 344443
No 241
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.58 E-value=0.93 Score=36.73 Aligned_cols=59 Identities=15% Similarity=0.291 Sum_probs=32.8
Q ss_pred HcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 008097 282 CSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 282 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
.+.|++++|.+.|+.+..+-+..+-.....-.++.+|.+.+++++|...+++..++.|+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 34566666666666666553333333334445556666666666666666666665543
No 242
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.58 E-value=1.7 Score=35.30 Aligned_cols=74 Identities=9% Similarity=0.077 Sum_probs=43.6
Q ss_pred HHHhcCChhHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHh
Q 008097 245 SYCETGVLDSALDVFNDMKIDGI--SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYR 320 (577)
Q Consensus 245 ~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 320 (577)
...+.|++++|.+.|+.+...-. +-....--.++.+|.+.+++++|...+++..+..|..+ -+.|-..+.+++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp--~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP--NVDYAYYMRGLSY 94 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC--CccHHHHHHHHHH
Confidence 34566777777777777765410 11234445567777777777777777777777644322 2345555555443
No 243
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.55 E-value=1.9 Score=34.19 Aligned_cols=58 Identities=10% Similarity=0.127 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
.....-++.+...|+-+.-.+++.++.+. -.|++.....+..||.+.|+..++.+++.
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 33444455555555555555555555432 24555555555556666666666555555
No 244
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.50 E-value=5 Score=38.96 Aligned_cols=147 Identities=16% Similarity=0.117 Sum_probs=90.9
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHH
Q 008097 344 RSLKILGFCVDGNVEDAKRCFDQMIEEG-GVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAST-FNTVLSGL 421 (577)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~ 421 (577)
|...+..-.+..-++.|..+|-+..+.+ ..+++..+++++.-++ .|+..-|..+|+--... -||... -.-.+.-+
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fL 476 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHH
Confidence 4444555556666777777887777776 5567777777777665 45666777777654432 244333 23345555
Q ss_pred HhcCCHHHHHHHHHHhhcccCCCCCCC--cccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcch
Q 008097 422 CRQGNVGTALKLVEEDMRGIGRGSLPG--SGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTT 499 (577)
Q Consensus 422 ~~~g~~~~a~~~~~~~m~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 499 (577)
.+-++-+.|..+|++.+.+ +..+ ...|..||+--..-|++..|..+=++|.+ +-|-..+...+.+-+....+
T Consensus 477 i~inde~naraLFetsv~r----~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik~d 550 (660)
T COG5107 477 IRINDEENARALFETSVER----LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIKAD 550 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH----HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhhcc
Confidence 6677777777777754441 2222 45677777777777777777777777764 34555555555555554444
No 245
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.30 E-value=0.28 Score=44.03 Aligned_cols=101 Identities=15% Similarity=0.113 Sum_probs=71.0
Q ss_pred CCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------------HHHHH
Q 008097 373 VPNVVIYDCLIHAYCQE-----ERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGN----------------VGTAL 431 (577)
Q Consensus 373 ~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----------------~~~a~ 431 (577)
+.|-.+|-.++..+..+ +.++-....++.|.+.|+.-|..+|+.|++.+-+... -+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 45677777777777653 5667777788899999999999999999987754432 23356
Q ss_pred HHHHHhhcccCCCCCCCcccHHHHHHHHHHcCCh-hHHHHHHHHHH
Q 008097 432 KLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGF-QSASMLLVQMV 476 (577)
Q Consensus 432 ~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 476 (577)
.+++ .|+ ..|+.||.++-..++++++|.|-. .+..++.--|+
T Consensus 144 ~vLe-qME--~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 144 KVLE-QME--WHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHH-HHH--HcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 7777 777 777888888777888887777653 33344444444
No 246
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.29 E-value=10 Score=41.69 Aligned_cols=152 Identities=19% Similarity=0.150 Sum_probs=80.0
Q ss_pred CCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH----HhcCCHhHHHHHH
Q 008097 130 GKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELL----CSVGRVMDAVEIL 205 (577)
Q Consensus 130 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~----~~~g~~~~a~~~~ 205 (577)
+++++|+.-+.++. ...|.-.+..--+.|.+.+|+.++ .|+...+..+..+| .....+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 56667766666655 223444455555666677776654 45666655555444 3455566665555
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHH--HHHHHHHHHc
Q 008097 206 EESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVT--YDTLIRGLCS 283 (577)
Q Consensus 206 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~ll~~~~~ 283 (577)
+. +|+.++| +.+|..+|++.+|+.+..++... .|... -..|+.-+..
T Consensus 963 e~------~GklekA----------------------l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 963 ER------CGKLEKA----------------------LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVE 1011 (1265)
T ss_pred HH------hccHHHH----------------------HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHH
Confidence 32 3333333 33455566666666666665421 12111 1345555666
Q ss_pred CCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 284 GGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQ 333 (577)
Q Consensus 284 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 333 (577)
.++.-+|-++....... ..-.+..+++...+++|+.+...
T Consensus 1012 ~~kh~eAa~il~e~~sd----------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLSD----------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred cccchhHHHHHHHHhcC----------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 66666666665554432 22334445555556666554433
No 247
>PRK11906 transcriptional regulator; Provisional
Probab=94.28 E-value=2 Score=42.10 Aligned_cols=143 Identities=7% Similarity=0.001 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHh---hcCCCcee-hHHHHH--------Hhh-hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008097 324 QDEALEYLKQME---KLFPRAVD-RSLKIL--------GFC-VDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE 390 (577)
Q Consensus 324 ~~~A~~~~~~~~---~~~p~~~~-~~~l~~--------~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (577)
.+.|+.+|.+.. ...|+... |..+.. ++. ......+|.++-++..+.+ +-|......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 456677777777 55554332 211111 111 2345667777777777764 347777777777778888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC---cccHHHHHHHHHHcCChh
Q 008097 391 RVREASELMKEMTGHGYLPIAS-TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG---SGHYSPLIKALCEKGGFQ 466 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~---~~~~~~li~~~~~~g~~~ 466 (577)
+++.|..+|++... +.||.. +|......+...|+.++|.+.+++.++ ..|. ....-..++.|+.. .++
T Consensus 353 ~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr-----LsP~~~~~~~~~~~~~~~~~~-~~~ 424 (458)
T PRK11906 353 QAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ-----LEPRRRKAVVIKECVDMYVPN-PLK 424 (458)
T ss_pred chhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCchhhHHHHHHHHHHHHcCC-chh
Confidence 89999999999887 457654 465666667788999999999986677 5663 33344445566654 456
Q ss_pred HHHHHHHHH
Q 008097 467 SASMLLVQM 475 (577)
Q Consensus 467 ~A~~~~~~m 475 (577)
+|..++-+-
T Consensus 425 ~~~~~~~~~ 433 (458)
T PRK11906 425 NNIKLYYKE 433 (458)
T ss_pred hhHHHHhhc
Confidence 677666543
No 248
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.22 E-value=2.6 Score=36.57 Aligned_cols=158 Identities=13% Similarity=-0.011 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCHhhHHHHH
Q 008097 9 PDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDDYTYAILM 88 (577)
Q Consensus 9 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~~~~ll 88 (577)
.-+.+||.|.--+...|+++.|.+.|+...+.++.-+-...|.-|..|.-.+++.|.+-|.+........|-...|-.+.
T Consensus 97 ~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 97 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34567777777777888888888888888776666666666666666655577777766653333333333333343332
Q ss_pred HHHHhcCCHhHHHHHH-HHHHhCCCCCCcchHHHHH-HHHHhcCCHhHHHHHHHhccC----------CCceeHHHHHHH
Q 008097 89 KGLCLTNRVGDGFKLL-HVMKSRGVKPNSVIYNTLI-HSLCKNGKVGRARSLMSDMEE----------PNDVTFSILICA 156 (577)
Q Consensus 89 ~~~~~~~~~~~a~~~~-~~~~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~li~~ 156 (577)
. +.-++.+|..-+ ++..+ .|..-|...| ..|...=..+ .+|+++.. .=..||.-+..-
T Consensus 177 E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred H---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 2 233455554433 33322 2333343333 2222211112 23333321 113356666666
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 008097 157 YCKEENLVNALVLLEKSFSF 176 (577)
Q Consensus 157 ~~~~~~~~~A~~~~~~m~~~ 176 (577)
|...|+.++|..+|+-....
T Consensus 247 ~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 247 YLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhccccHHHHHHHHHHHHHH
Confidence 77777777777777665543
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.19 E-value=4.1 Score=36.64 Aligned_cols=59 Identities=19% Similarity=0.390 Sum_probs=34.0
Q ss_pred HcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 008097 282 CSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 282 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
.+.|++++|.+.|+.+....+..+-...+.-.++.++.+.+++++|+..+++.....|+
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~ 103 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT 103 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Confidence 34566666666666666554443333334444555566666666666666666665553
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.10 E-value=2.1 Score=42.16 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 416 TVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 416 ~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
.+...+.+.|+.++|.+.|++.|+ +....-+......|+.+|...+.+.++..++.+-.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlk--e~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLK--EFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHh--hCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 344455566777777776663333 22111123345556666667777777777666654
No 251
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.01 E-value=3.7 Score=41.67 Aligned_cols=161 Identities=15% Similarity=0.065 Sum_probs=107.4
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCce---------ehHHHHHHhh----hcCCHHHHHHHHHHHHHcCCCCCH
Q 008097 310 PYNSVLYGLYRENQQDEALEYLKQMEKLFPRAV---------DRSLKILGFC----VDGNVEDAKRCFDQMIEEGGVPNV 376 (577)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~---------~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~ 376 (577)
....++....-.|+-+.+++.+.+..+ .++.. .|...+..++ .....+.|.++++.+... -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCc
Confidence 466777777888999999999988766 22221 2333333333 246788899999999885 5777
Q ss_pred hhHHHHH-HHHHhcCCHHHHHHHHHHHHhC--CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccH
Q 008097 377 VIYDCLI-HAYCQEERVREASELMKEMTGH--GYL-PIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHY 452 (577)
Q Consensus 377 ~~~~~li-~~~~~~g~~~~A~~~~~~m~~~--g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~ 452 (577)
..|...- +.+...|++++|++.|++.... ..+ .....+--+...+.-.+++++|...|. .+.. . -.-+...|
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~-~L~~-~--s~WSka~Y 342 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL-RLLK-E--SKWSKAFY 342 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH-HHHh-c--cccHHHHH
Confidence 7666544 5566789999999999976631 111 123345556667788899999999999 6651 1 12244445
Q ss_pred HHHHH-HHHHcCCh-------hHHHHHHHHHHH
Q 008097 453 SPLIK-ALCEKGGF-------QSASMLLVQMVG 477 (577)
Q Consensus 453 ~~li~-~~~~~g~~-------~~A~~~~~~m~~ 477 (577)
.-+.- ++...|+. ++|.+++++.+.
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 44443 34556777 888888888774
No 252
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.84 E-value=6 Score=37.34 Aligned_cols=202 Identities=15% Similarity=0.037 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHH-HH---HHCC-CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCc---
Q 008097 237 DTYNILISSYCETGVLDSALDVFN-DM---KIDG-ISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRI--- 308 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~-~m---~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--- 308 (577)
.++..+..+.++.|.+++++..-- +| .+.. -..--..|..+..++-+..++.+++.+-..-... +|..|..
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~l-pgt~~~~~~g 122 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGL-PGTRAGQLGG 122 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC-CCCCcccccc
Confidence 445566667777777777654321 11 1100 0011233445555665555666666554443332 2222211
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhcC-----C--CceehHHHHHHhhhcCCHHHHHHHHHHHHHc----CCCCCHh
Q 008097 309 SPYNSVLYGLYRENQQDEALEYLKQMEKLF-----P--RAVDRSLKILGFCVDGNVEDAKRCFDQMIEE----GGVPNVV 377 (577)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~ 377 (577)
....++..++.-.+.++++++.|+...+.. | ....+..+...|.+..++++|.-+..+..+. ++..-..
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 223345566777778888888888876531 1 1234556666677777777776555554432 2111111
Q ss_pred hHH-----HHHHHHHhcCCHHHHHHHHHHHH----hCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 378 IYD-----CLIHAYCQEERVREASELMKEMT----GHGYLPI-ASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 378 ~~~-----~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
-|. -|.-++...|..-.|.+.-++.. ..|-+|- ......+.+.|...|+.+.|+.-++..|.
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 122 23344555666655555555443 3332322 22345566667777777777777765554
No 253
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.66 E-value=0.0024 Score=53.04 Aligned_cols=129 Identities=15% Similarity=0.176 Sum_probs=87.0
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008097 346 LKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQG 425 (577)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 425 (577)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++... ..-...++..|...|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcc
Confidence 3456677778888888888888876656678889999999999988888888877221 133346777888888
Q ss_pred CHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcch
Q 008097 426 NVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTT 499 (577)
Q Consensus 426 ~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 499 (577)
.++++..++. .+...... ++.+...+++++|.+++.+. ++...|..++..|..++.
T Consensus 85 l~~~a~~Ly~-~~~~~~~a-----------l~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYS-KLGNHDEA-----------LEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHH-CCTTHTTC-----------SSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTC
T ss_pred hHHHHHHHHH-HcccHHHH-----------HHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCc
Confidence 8888888888 54411111 11233445666666555444 356789999888876654
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.62 E-value=3.1 Score=38.69 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=42.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHH
Q 008097 353 VDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGH---GYLPIASTFNTVLSGLCRQGNVGT 429 (577)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~ 429 (577)
.+|-+++|++.-++..+.+ +.|.-.-.+....+-..|+..++.++..+-.+. +-..-...|-...-.+...+.++.
T Consensus 187 E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ 265 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEK 265 (491)
T ss_pred HhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhH
Confidence 5566666666666555531 123333344555555667777777665543321 000001112222223344567777
Q ss_pred HHHHHHHhhc
Q 008097 430 ALKLVEEDMR 439 (577)
Q Consensus 430 a~~~~~~~m~ 439 (577)
|+.+|+..|-
T Consensus 266 aleIyD~ei~ 275 (491)
T KOG2610|consen 266 ALEIYDREIW 275 (491)
T ss_pred HHHHHHHHHH
Confidence 7777775554
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.57 E-value=1.6 Score=40.49 Aligned_cols=153 Identities=10% Similarity=0.023 Sum_probs=99.3
Q ss_pred hcCCHHHHHHHHHHHhhcCC-CceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHH----HHHHHHHhcCCHHH
Q 008097 320 RENQQDEALEYLKQMEKLFP-RAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYD----CLIHAYCQEERVRE 394 (577)
Q Consensus 320 ~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~li~~~~~~g~~~~ 394 (577)
-.|...+|-..++++.+..| |...+...-++|.-.|+.+.-...++++... -.||...|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 35566666666666666544 3445555556777777777777777777654 234443332 33345567899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCC--CCCCcccHHHHHHHHHHcCChhHHHHHH
Q 008097 395 ASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRG--SLPGSGHYSPLIKALCEKGGFQSASMLL 472 (577)
Q Consensus 395 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~ 472 (577)
|.+.-++..+-+ +-|...-.++...+--.|++.++.++.. .-.. +.. --.-...|-...-.+...+.++.|++++
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~-~ted-~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMY-KTED-DWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHH-hccc-chhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999988743 3366666777777888999999999988 3320 111 1111233445555566778999999999
Q ss_pred HHHH
Q 008097 473 VQMV 476 (577)
Q Consensus 473 ~~m~ 476 (577)
++-.
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7644
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.45 E-value=1.3 Score=41.43 Aligned_cols=228 Identities=14% Similarity=0.094 Sum_probs=133.0
Q ss_pred hcCChhHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHcCCChHHHHHHHH-HH---HhccCCCCCCcccHHHHHHHHHhc
Q 008097 248 ETGVLDSALDVFNDMKID--GISWNFVTYDTLIRGLCSGGRIDDGLKILQ-LM---EDSKEGSKGRISPYNSVLYGLYRE 321 (577)
Q Consensus 248 ~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~-~~---~~~~~~~~~~~~~~~~li~~~~~~ 321 (577)
...+.++|+..+.+.... ...--..++..+.++.++.|.++++...-- .| .+.. ....-...|..+..++.+.
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~-ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELE-DSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 344556666666554432 011123456666777777787777654321 11 1110 0000112344455555555
Q ss_pred CCHHHHHHHHHHHhhc---CCCc---eehHHHHHHhhhcCCHHHHHHHHHHHHHcCC---C--CCHhhHHHHHHHHHhcC
Q 008097 322 NQQDEALEYLKQMEKL---FPRA---VDRSLKILGFCVDGNVEDAKRCFDQMIEEGG---V--PNVVIYDCLIHAYCQEE 390 (577)
Q Consensus 322 g~~~~A~~~~~~~~~~---~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~--p~~~~~~~li~~~~~~g 390 (577)
.++.+++.+-..-... .|.. ....++..++...+.++++++.|+...+-.. . .....+..+.+.|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 5555555554443332 2211 1223455677777889999999998876411 1 12457889999999999
Q ss_pred CHHHHHHHHHHHHh----CCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhcc-cCCCCCC-CcccHHHHHHHH
Q 008097 391 RVREASELMKEMTG----HGYLPIA-----STFNTVLSGLCRQGNVGTALKLVEEDMRG-IGRGSLP-GSGHYSPLIKAL 459 (577)
Q Consensus 391 ~~~~A~~~~~~m~~----~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~m~~-~~~~~~p-~~~~~~~li~~~ 459 (577)
++++|+-+..+..+ .++.-=. .....+.-++...|....|.+..++.|+- ...|-.| -.....++.|.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 99999877766542 2222111 12334556788899999999888866651 1223333 334467889999
Q ss_pred HHcCChhHHHHHHHHHH
Q 008097 460 CEKGGFQSASMLLVQMV 476 (577)
Q Consensus 460 ~~~g~~~~A~~~~~~m~ 476 (577)
...|+.+.|..-++...
T Consensus 257 R~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAM 273 (518)
T ss_pred HhcccHhHHHHHHHHHH
Confidence 99999999887777644
No 257
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.27 E-value=5.7 Score=35.35 Aligned_cols=222 Identities=19% Similarity=0.101 Sum_probs=139.6
Q ss_pred cCChhHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHH
Q 008097 249 TGVLDSALDVFNDMKIDGIS-WNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEA 327 (577)
Q Consensus 249 ~g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 327 (577)
.+....+...+......... .....+......+...+.+..+...+...... .........+......+...+....+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEA 114 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHH
Confidence 34455555555555544221 12456666667777777888777777766541 01122334455666666677777788
Q ss_pred HHHHHHHhhcCCCce-ehHHHHH-HhhhcCCHHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 328 LEYLKQMEKLFPRAV-DRSLKIL-GFCVDGNVEDAKRCFDQMIEEGG--VPNVVIYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 328 ~~~~~~~~~~~p~~~-~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
...+.......+... ....... .+...|+.+.|...|.+...... ......+......+...++.+++...+.+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 115 LELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 888877776555442 2223333 67788888888888888855211 1223344444444667888889999888888
Q ss_pred hCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC-cccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 404 GHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG-SGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 404 ~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
... .. ....+..+...+...+..+++...+.+... ..|+ ...+..+...+...|.++++...+.+...
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALE-----LDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHh-----hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 642 22 356777777888888888888888884444 3443 44455555555567778888888888774
No 258
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.14 E-value=16 Score=40.25 Aligned_cols=78 Identities=21% Similarity=0.190 Sum_probs=38.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHH
Q 008097 384 HAYCQEERVREASELMKEMTGHGYLPIAS--TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCE 461 (577)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~ 461 (577)
.+|-..|++.+|+.+..++.. .-|.. +-..|..-+...++.-+|-++..+... .| .-.+..|++
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s------d~-----~~av~ll~k 1038 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS------DP-----EEAVALLCK 1038 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc------CH-----HHHHHHHhh
Confidence 344455566666665555532 11211 123455555566666666555552222 22 334455556
Q ss_pred cCChhHHHHHHHHH
Q 008097 462 KGGFQSASMLLVQM 475 (577)
Q Consensus 462 ~g~~~~A~~~~~~m 475 (577)
+..|++|..+...-
T Consensus 1039 a~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1039 AKEWEEALRVASKA 1052 (1265)
T ss_pred HhHHHHHHHHHHhc
Confidence 66666665554433
No 259
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.13 E-value=0.32 Score=30.39 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=27.3
Q ss_pred ccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 008097 450 GHYSPLIKALCEKGGFQSASMLLVQMVGKGILPD-YLTWNSL 490 (577)
Q Consensus 450 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l 490 (577)
..+..+...|.+.|++++|.+++++..+. .|+ ...|..|
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHHHHh
Confidence 35667788888888888888888888753 444 4555544
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.13 E-value=0.29 Score=30.61 Aligned_cols=40 Identities=5% Similarity=0.145 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008097 12 SIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSI 52 (577)
Q Consensus 12 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 52 (577)
.++..+..+|.+.|++++|+++|+++.+..| .+...|..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP-DDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CCHHHHHHh
Confidence 4678899999999999999999999988654 355555544
No 261
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.01 E-value=7.9 Score=36.21 Aligned_cols=127 Identities=20% Similarity=0.145 Sum_probs=72.4
Q ss_pred hcCChHHHHHHHHHHHhCC--CCCCH------hhHHHHHHHHHhcC-CHhHHHHHHHHHHHhhhcCChhHHHHHHHHHH-
Q 008097 159 KEENLVNALVLLEKSFSFG--FVPDV------VTITKVLELLCSVG-RVMDAVEILEESGEQGRLGKVKGGCRFLKEME- 228 (577)
Q Consensus 159 ~~~~~~~A~~~~~~m~~~g--~~~~~------~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~- 228 (577)
+.|+.+.|..++.+..... ..|+. ..|+.- ....+.+ +++.|...+++..+. ++...
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G-~~l~~~~~~~~~a~~wL~~a~~~------------l~~~~~ 71 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIG-KSLLSKKDKYEEAVKWLQRAYDI------------LEKPGK 71 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHH-HHHHHcCCChHHHHHHHHHHHHH------------HHhhhh
Confidence 4566666666666554322 12221 122222 2333445 777887776665443 32211
Q ss_pred HcCCCCC-----hhhHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCcC-HHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 008097 229 RKGCLPN-----VDTYNILISSYCETGVLD---SALDVFNDMKIDGISWN-FVTYDTLIRGLCSGGRIDDGLKILQLMED 299 (577)
Q Consensus 229 ~~~~~p~-----~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 299 (577)
.....|+ ..+...++.+|...+..+ +|..+++.+.... |+ +.++..-+..+.+.++.+.+.+++..|..
T Consensus 72 ~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 72 MDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 0111222 235667788888877654 5666777775542 33 44555567777778999999999999987
Q ss_pred c
Q 008097 300 S 300 (577)
Q Consensus 300 ~ 300 (577)
.
T Consensus 150 ~ 150 (278)
T PF08631_consen 150 S 150 (278)
T ss_pred h
Confidence 5
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.88 E-value=7.5 Score=35.75 Aligned_cols=120 Identities=11% Similarity=0.068 Sum_probs=70.5
Q ss_pred hhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHH
Q 008097 212 GRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGL 291 (577)
Q Consensus 212 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 291 (577)
...|++.+|..+|+........ +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 3445556666666666654322 345566778888889999999999988765422222222233344455555555444
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008097 292 KILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK 336 (577)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (577)
.+-...-.. +.|...-..+...+...|+.+.|++.+-.+.+
T Consensus 224 ~l~~~~aad----Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 224 DLQRRLAAD----PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444321 12555556667777777888877776666554
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.21 E-value=1.8 Score=34.20 Aligned_cols=88 Identities=23% Similarity=0.261 Sum_probs=46.1
Q ss_pred HHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCcee----hHHHHHHhhhcC
Q 008097 281 LCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKL-FPRAVD----RSLKILGFCVDG 355 (577)
Q Consensus 281 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~----~~~l~~~~~~~g 355 (577)
.+..|+++.|++.|.+.... .+.....||.-..++.-.|+.++|++-+++..+. .|...+ |..-...|-..|
T Consensus 53 laE~g~Ld~AlE~F~qal~l---~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL---APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHHh---cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 44556666666666555543 2224455665556666666666666555555543 121111 112223455667
Q ss_pred CHHHHHHHHHHHHHcC
Q 008097 356 NVEDAKRCFDQMIEEG 371 (577)
Q Consensus 356 ~~~~A~~~~~~~~~~~ 371 (577)
+.+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777776666554
No 264
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.21 E-value=17 Score=38.15 Aligned_cols=102 Identities=15% Similarity=0.099 Sum_probs=69.8
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCC---CcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChH
Q 008097 88 MKGLCLTNRVGDGFKLLHVMKSRGVKP---NSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLV 164 (577)
Q Consensus 88 l~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 164 (577)
+.-+.+.+.+++|+.+-..... ..| ...++...|+.+.-.|++++|-.+.-.|...+..-|...+..+...++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 3455667778888776655443 233 34567888899999999999999999998888888888888888777765
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 008097 165 NALVLLEKSFSFGFVPDVVTITKVLELLCS 194 (577)
Q Consensus 165 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 194 (577)
....++ .......+...|..++..+..
T Consensus 441 ~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 441 DIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 544332 121222345667777766654
No 265
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.11 E-value=1.8 Score=34.12 Aligned_cols=53 Identities=15% Similarity=0.158 Sum_probs=26.7
Q ss_pred HhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 350 GFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
+.+..|+++.|++.|.+.+.. .+.....||.-..++.-.|+.++|++-+++..
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence 344455555555555555543 22344455555555555555555555555544
No 266
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.06 E-value=11 Score=35.52 Aligned_cols=83 Identities=19% Similarity=0.335 Sum_probs=46.9
Q ss_pred HhHHHHHHHHHHhCCCCCCcchHHHHHHHHHh--cC----CHhHHHHHHHhccC-------CCceeHHHHHHHHHhcCCh
Q 008097 97 VGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCK--NG----KVGRARSLMSDMEE-------PNDVTFSILICAYCKEENL 163 (577)
Q Consensus 97 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~~ 163 (577)
++....+++.|.+.|+..+.++|-+..-.... .. ...+|..+|+.|.+ ++..++..|+.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556778888888888777766554333333 11 24567777777764 344555555544 22222
Q ss_pred ----HHHHHHHHHHHhCCCCCC
Q 008097 164 ----VNALVLLEKSFSFGFVPD 181 (577)
Q Consensus 164 ----~~A~~~~~~m~~~g~~~~ 181 (577)
+.+...|+.+.+.|+..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kg 177 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKG 177 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC
Confidence 444555666665555443
No 267
>PRK11906 transcriptional regulator; Provisional
Probab=91.80 E-value=7.6 Score=38.31 Aligned_cols=135 Identities=11% Similarity=0.026 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHHHc-CCCCC-HhhHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008097 356 NVEDAKRCFDQMIEE-GGVPN-VVIYDCLIHAYCQ---------EERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQ 424 (577)
Q Consensus 356 ~~~~A~~~~~~~~~~-~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 424 (577)
..+.|..+|.+.... ...|+ ...|..+..++.. .....+|.++-++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 467889999999822 24455 3344444433322 224567788888888754 34777777777778888
Q ss_pred CCHHHHHHHHHHhhcccCCCCCCC-cccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcc
Q 008097 425 GNVGTALKLVEEDMRGIGRGSLPG-SGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDY---LTWNSLLICLSQQT 498 (577)
Q Consensus 425 g~~~~a~~~~~~~m~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~ 498 (577)
|+++.|...|++... +.|| ...|......+.-+|+.++|.+.+++..+ +.|-. .+....+.-|+.++
T Consensus 352 ~~~~~a~~~f~rA~~-----L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 352 GQAKVSHILFEQAKI-----HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP 422 (458)
T ss_pred cchhhHHHHHHHHhh-----cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc
Confidence 899999999996555 7884 56677777788889999999999999652 55543 33444444555554
No 268
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.49 E-value=7.5 Score=32.59 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=10.2
Q ss_pred HcCCChHHHHHHHHHHHhc
Q 008097 282 CSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 282 ~~~g~~~~a~~~~~~~~~~ 300 (577)
++.+..++|..-|..+.+.
T Consensus 69 A~~~k~d~Alaaf~~lekt 87 (221)
T COG4649 69 AQENKTDDALAAFTDLEKT 87 (221)
T ss_pred HHcCCchHHHHHHHHHHhc
Confidence 3445555555555555554
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.36 E-value=17 Score=36.28 Aligned_cols=138 Identities=18% Similarity=0.170 Sum_probs=75.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhc--CCh--hHHH-HHHHHHHHcCC
Q 008097 158 CKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRL--GKV--KGGC-RFLKEMERKGC 232 (577)
Q Consensus 158 ~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--g~~--~~a~-~~~~~~~~~~~ 232 (577)
-+..+.+.-++.-++.++ +.||-.+.-.+ -+--......++++++++..+.++. |.. .... ...+....+..
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYIL-LAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt 255 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYIL-LAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDT 255 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhh-cccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcccc
Confidence 344555555555555544 34443222222 2222345678888888887766211 110 0010 01111222222
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008097 233 LPNVDTYNILISSYCETGVLDSALDVFNDMKIDGIS-WNFVTYDTLIRGLCSGGRIDDGLKILQLME 298 (577)
Q Consensus 233 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 298 (577)
.|-...-..+..+.-+.|+.++|.+.|++|.+.... -+.-....|+.++...+.+.++..++.+-.
T Consensus 256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 222333344555666789999999999998865322 123356678888888999999988888764
No 270
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.14 E-value=15 Score=35.51 Aligned_cols=98 Identities=14% Similarity=0.116 Sum_probs=58.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC---CCcCHHHHHHHHHHHHc---CCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 241 ILISSYCETGVLDSALDVFNDMKIDG---ISWNFVTYDTLIRGLCS---GGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 241 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
.++-+|....+++...++.+.+.... +.-....-....-++.+ .|+.++|.+++..+... ...++..++..+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~--~~~~~~d~~gL~ 223 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES--DENPDPDTLGLL 223 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc--cCCCChHHHHHH
Confidence 44446888999999999999998641 11122222233445556 79999999999886655 344566667666
Q ss_pred HHHHHh---------cCCHHHHHHHHHHHhhcCCC
Q 008097 315 LYGLYR---------ENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 315 i~~~~~---------~g~~~~A~~~~~~~~~~~p~ 340 (577)
...|-. ....++|...+.+.-+..|+
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 655532 11244555555555444443
No 271
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.99 E-value=11 Score=33.47 Aligned_cols=198 Identities=17% Similarity=0.086 Sum_probs=142.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKID-GISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
...+......+...+.+..+...+...... ........+......+...++...+...+......... +.......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 135 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD---PDLAEALL 135 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC---cchHHHHH
Confidence 466677778888899999999888887752 23445666777777788888899999999988764211 12223333
Q ss_pred HH-HHHhcCCHHHHHHHHHHHhhcCCC----ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHh
Q 008097 315 LY-GLYRENQQDEALEYLKQMEKLFPR----AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVP-NVVIYDCLIHAYCQ 388 (577)
Q Consensus 315 i~-~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 388 (577)
.. .+...|+++.|...+.+.....|. ...+......+...++.+.+...+.+.... .+. ....+..+...+..
T Consensus 136 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 136 ALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL-NPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-CcccchHHHHHhhHHHHH
Confidence 33 788999999999999998665442 122233333466789999999999999885 222 36778888899999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 389 EERVREASELMKEMTGHGYLPI-ASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 389 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
.++.++|...+...... .|+ ...+..+...+...|..+++...+.+...
T Consensus 215 ~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999874 354 44455555555577789999988885444
No 272
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.93 E-value=2.3 Score=39.13 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=49.3
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHH
Q 008097 345 SLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG-----HGYLPIASTFNTVLS 419 (577)
Q Consensus 345 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ll~ 419 (577)
..++..+..+|+.+.+...++++... .+-|...|..++.+|.+.|+...|+..|+++.+ .|+.|...+......
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~ 235 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEE 235 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHH
Confidence 34455566667777777777777665 234667777777777777777777777776653 567776666554444
Q ss_pred H
Q 008097 420 G 420 (577)
Q Consensus 420 ~ 420 (577)
+
T Consensus 236 ~ 236 (280)
T COG3629 236 I 236 (280)
T ss_pred H
Confidence 3
No 273
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.81 E-value=13 Score=34.21 Aligned_cols=119 Identities=9% Similarity=-0.006 Sum_probs=61.2
Q ss_pred HHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCce--ehHHHHHHhhhcCCH
Q 008097 280 GLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAV--DRSLKILGFCVDGNV 357 (577)
Q Consensus 280 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~ 357 (577)
.....|++.+|..+|.......+. +...--.+..+|...|+.+.|..++..+.....+.. ....-+..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~---~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE---NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc---cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345567777777777776665322 344455666777777777777777766644221111 111222222233333
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 358 EDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 358 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
.+...+-.+.-.. +-|...--.+...|...|+.++|++.+-.+.
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333321 1144455555666666666666666655554
No 274
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.71 E-value=1.3 Score=32.71 Aligned_cols=61 Identities=13% Similarity=0.217 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHH
Q 008097 392 VREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLI 456 (577)
Q Consensus 392 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li 456 (577)
.-++.+-++.+....+.|++....+.++||.+..++.-|.++|+ .++ ..+..+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE-~vK---~K~~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILE-AIK---DKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHH-HHH---HHccCchhhHHHHH
Confidence 34555666666667788888888888888888888888888888 666 12222444566554
No 275
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.41 E-value=3 Score=38.36 Aligned_cols=76 Identities=17% Similarity=0.122 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHH
Q 008097 413 TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVG-----KGILPDYLT 486 (577)
Q Consensus 413 ~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 486 (577)
++..++..+...|+.+.+...+++.+. ..| +...|..++.+|.+.|+...|+..++++.+ .|+.|...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~-----~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIE-----LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh-----cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 444555666666777777776663333 445 666677777777777777777777766554 578888887
Q ss_pred HHHHHHH
Q 008097 487 WNSLLIC 493 (577)
Q Consensus 487 ~~~ll~~ 493 (577)
+......
T Consensus 230 ~~~y~~~ 236 (280)
T COG3629 230 RALYEEI 236 (280)
T ss_pred HHHHHHH
Confidence 7766666
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.27 E-value=0.65 Score=27.43 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 379 YDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
|+.|...|.+.|++++|+++|++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666666666666666666643
No 277
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.20 E-value=0.67 Score=26.79 Aligned_cols=27 Identities=30% Similarity=0.212 Sum_probs=16.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666666666666666666666665
No 278
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.15 E-value=1.4 Score=32.95 Aligned_cols=60 Identities=13% Similarity=0.249 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHH
Q 008097 394 EASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIK 457 (577)
Q Consensus 394 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~ 457 (577)
+..+-++.+....+.|++....+.+.||.+..++.-|.++|+ .++ ..+.+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE-~iK---~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILE-GIK---DKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHH-HHH---HHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHH-HHH---HHccChHHHHHHHHH
Confidence 455556666677788899899999999999999999999998 776 223333336766653
No 279
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.02 E-value=0.23 Score=28.99 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=16.4
Q ss_pred CCC-CcccHHHHHHHHHHcCChhHHH
Q 008097 445 SLP-GSGHYSPLIKALCEKGGFQSAS 469 (577)
Q Consensus 445 ~~p-~~~~~~~li~~~~~~g~~~~A~ 469 (577)
+.| +...|..+..+|...|++++|.
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 345 5666777777777777776664
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.61 E-value=0.7 Score=27.29 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=20.6
Q ss_pred cHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 451 HYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 451 ~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
+|..|.++|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888999999999999988854
No 281
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.25 E-value=28 Score=35.53 Aligned_cols=127 Identities=11% Similarity=0.127 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhh-HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHH
Q 008097 45 SLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYT-YAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTL 122 (577)
Q Consensus 45 ~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 122 (577)
+...|..+|.---.. +.+.++..++ .+... -|..+- |-....-=.+.|..+.+.++|++.++ |++.+...|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~-~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYD-IFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHH-HHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 344566666544333 5566666666 33321 344332 23333333467888888888888887 566677777666
Q ss_pred HHHHH-hcCCHhHHHHHHHhccC------CCceeHHHHHHHHHhcCChHHHHHHHHHHHh
Q 008097 123 IHSLC-KNGKVGRARSLMSDMEE------PNDVTFSILICAYCKEENLVNALVLLEKSFS 175 (577)
Q Consensus 123 i~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 175 (577)
+..+. ..|+.+..++.|+.... .....|...|..-..+.++.....+|++.++
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 65544 34777788888887764 4555688888877888888888888888875
No 282
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.87 E-value=13 Score=31.31 Aligned_cols=101 Identities=14% Similarity=0.179 Sum_probs=66.5
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Q 008097 223 FLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE 302 (577)
Q Consensus 223 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 302 (577)
..+.+.+.+++|+...+..+|+.+.+.|++... .++...++-+|.......+-.+.. ....+.++=-+|..+
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH--
Confidence 355667788999999999999999999986554 444555666777666655543432 334444444444432
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008097 303 GSKGRISPYNSVLYGLYRENQQDEALEYLKQME 335 (577)
Q Consensus 303 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 335 (577)
=...+..++..+...|++-+|+++.+...
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~ 116 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYH 116 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 11135667778888888888888877653
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.72 E-value=2.8 Score=35.97 Aligned_cols=61 Identities=21% Similarity=0.172 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGISWNF--VTYDTLIRGLCSGGRIDDGLKILQLME 298 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~ 298 (577)
.+..+..-|++.|+.+.|++.|.++.+....+.. ..+-.+|....-.+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4445555555555555555555555543322221 223344444444455555554444443
No 284
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.34 E-value=0.98 Score=26.06 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 008097 311 YNSVLYGLYRENQQDEALEYLKQMEKLFP 339 (577)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p 339 (577)
|..+..+|...|++++|+..|++..+..|
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 44555555566666666666655555444
No 285
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.23 E-value=2.5 Score=38.92 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=28.3
Q ss_pred CHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhcc
Q 008097 96 RVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDME 143 (577)
Q Consensus 96 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 143 (577)
++++++.++..=+.-|+-||.+++..+|+.+.+.+++.+|.++.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444555555555556666666666666666666666666555555444
No 286
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.08 E-value=5.4 Score=34.52 Aligned_cols=81 Identities=10% Similarity=0.033 Sum_probs=42.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChh
Q 008097 387 CQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQ 466 (577)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~ 466 (577)
.+.|+ ++|.+.|-++...+.--++.....+..-|. ..+.+++..++.+.+.-...+-.+|++.+..|+..|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 456666666655544334444434333333 4556666666554444222233456666666666666666666
Q ss_pred HHH
Q 008097 467 SAS 469 (577)
Q Consensus 467 ~A~ 469 (577)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 553
No 287
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.74 E-value=42 Score=35.79 Aligned_cols=173 Identities=14% Similarity=0.094 Sum_probs=101.4
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----hc-CHHHHHHHHHHHHhhcCCCCCHhhHHHH
Q 008097 13 IFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLV----KE-DIDLARAFYRKKMMASGVQGDDYTYAIL 87 (577)
Q Consensus 13 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~l 87 (577)
....-+..+.+...+..|+.+-..-. -+......+...|. +. ++++|...|-+.+.. ++| ..+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~-----s~V 403 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEP-----SEV 403 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CCh-----HHH
Confidence 34455666667777777776655431 23333334443332 23 888888877632211 222 245
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCce-eHHHHHHHHHhcCChHHH
Q 008097 88 MKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDV-TFSILICAYCKEENLVNA 166 (577)
Q Consensus 88 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A 166 (577)
++-|.....+..--..++.+.+.|+. +...-+.|+..|.+.++.+.-.+..+...+.... -....+..+.+.+-.++|
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEA 482 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHH
Confidence 66666666777777788888888875 5556677888999999988888877776622211 245566666666767777
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 008097 167 LVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILE 206 (577)
Q Consensus 167 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 206 (577)
.-+-.+... .......++ -..+++++|.+.+.
T Consensus 483 ~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDILL---EDLHNYEEALRYIS 514 (933)
T ss_pred HHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHh
Confidence 665554321 222222222 23455666666543
No 288
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.47 E-value=15 Score=31.55 Aligned_cols=20 Identities=10% Similarity=0.096 Sum_probs=11.6
Q ss_pred HHHHcCCChHHHHHHHHHHH
Q 008097 279 RGLCSGGRIDDGLKILQLME 298 (577)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~~~ 298 (577)
..+..+|++++|...++...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l 116 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQAL 116 (207)
T ss_pred HHHHhhccHHHHHHHHHHHH
Confidence 34555666666666665544
No 289
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.45 E-value=9.3 Score=35.37 Aligned_cols=100 Identities=18% Similarity=0.283 Sum_probs=72.7
Q ss_pred CCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC-CCc-----eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh
Q 008097 110 RGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE-PND-----VTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVV 183 (577)
Q Consensus 110 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~ 183 (577)
.|.+....+...++..-....+++.+...+-++.. |+. .+-.+.++-+. .-++++++-++..=...|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 35555666777777777777888999888877764 221 11122333333 346779999998888999999999
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 008097 184 TITKVLELLCSVGRVMDAVEILEESGE 210 (577)
Q Consensus 184 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 210 (577)
+++.+++.+.+.+++.+|.++...++.
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999998887655443
No 290
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.32 E-value=5.1 Score=34.40 Aligned_cols=57 Identities=11% Similarity=0.156 Sum_probs=26.7
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 347 KILGFCVDGNVEDAKRCFDQMIEEGGVPN--VVIYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
+...|++.|+.+.|.+.|.++.+....+. ...+-.+|....-.+++..+...+.+..
T Consensus 42 l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 42 LADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34445555555555555555544322221 2234444555555555555555554443
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.13 E-value=16 Score=30.39 Aligned_cols=52 Identities=25% Similarity=0.252 Sum_probs=32.7
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCceehHHH-HHHhhhcCCHHHHHHHHHHHHHc
Q 008097 319 YRENQQDEALEYLKQMEKLFPRAVDRSLK-ILGFCVDGNVEDAKRCFDQMIEE 370 (577)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~ 370 (577)
.+.++.+++..++..+.-..|.......+ ...+...|++.+|.++|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 44566777777777776666655443332 23455777777777777777654
No 292
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.90 E-value=22 Score=31.78 Aligned_cols=209 Identities=11% Similarity=0.020 Sum_probs=93.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCC--ceeHHHHHHHHHhc
Q 008097 83 TYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPN--DVTFSILICAYCKE 160 (577)
Q Consensus 83 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~ 160 (577)
.|.....+|...+++++|...+.+..+ +.+.+...|.+ ...++.|.-+.+++.+-+ +..|+--...|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 355555566667777777776666554 22333333321 123344444555544322 12344444555555
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhh-cCChhHHHHHHHHHHHcCCCCChhhH
Q 008097 161 ENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGR-LGKVKGGCRFLKEMERKGCLPNVDTY 239 (577)
Q Consensus 161 ~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~ 239 (577)
|.++-|-..+++.-+. ...-++++|++++.+...... .++... -...+
T Consensus 105 GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~m---------------a~el~ 153 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQM---------------AFELY 153 (308)
T ss_pred CCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHH---------------HHHHH
Confidence 5555555544443211 122233344444333222100 001111 11223
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCC----CCcCH-HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC-CCCcccHHH
Q 008097 240 NILISSYCETGVLDSALDVFNDMKIDG----ISWNF-VTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGS-KGRISPYNS 313 (577)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~ 313 (577)
...-..+.+...+++|-..|.+-.... --++. ..|.+.|-.|.-..++..|...++.-.+...-. ..+..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 334445556666666655444322110 01111 224444555555677888888877644331111 123445666
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 008097 314 VLYGLYRENQQDEALEYL 331 (577)
Q Consensus 314 li~~~~~~g~~~~A~~~~ 331 (577)
|+.+| ..|+.+++..++
T Consensus 234 LL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 234 LLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHh-ccCCHHHHHHHH
Confidence 66665 345666555443
No 293
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.83 E-value=24 Score=32.51 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh
Q 008097 151 SILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ 211 (577)
Q Consensus 151 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 211 (577)
+...+.|..+|.+.+|.++.++.+... +.+...+-.++..+...|+--.+.+-++.+.+.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 444567777888888888887776654 446666777777888888766666666665554
No 294
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.73 E-value=1.5 Score=25.08 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=14.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555555555555555555554
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.91 E-value=19 Score=29.99 Aligned_cols=51 Identities=18% Similarity=0.082 Sum_probs=31.8
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCcchH-HHHHHHHHhcCCHhHHHHHHHhccCC
Q 008097 93 LTNRVGDGFKLLHVMKSRGVKPNSVIY-NTLIHSLCKNGKVGRARSLMSDMEEP 145 (577)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~ 145 (577)
+.++.+.+..+++.+.-. .|..... ..-...+.+.|++.+|+++|+.+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 566777777777777654 3333222 22234466778888888888887653
No 296
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.70 E-value=36 Score=32.98 Aligned_cols=67 Identities=18% Similarity=0.153 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 410 IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 410 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
...+|..+...+.+.|.++.|...+. .+........+ .+.....-++.+...|+..+|...+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~-~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALN-RLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHH-HHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44578888999999999999999988 45411111111 455666677888889999999999888876
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.63 E-value=1.7 Score=24.91 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 008097 311 YNSVLYGLYRENQQDEALEYLKQMEKLFP 339 (577)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p 339 (577)
|..+...+.+.|++++|++.|++..+..|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 34444555555555555555555555444
No 298
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.60 E-value=1.1 Score=26.09 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=13.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHH
Q 008097 375 NVVIYDCLIHAYCQEERVREAS 396 (577)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~ 396 (577)
|..+|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4556666666666666666654
No 299
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.34 E-value=6.7 Score=33.96 Aligned_cols=81 Identities=10% Similarity=-0.043 Sum_probs=56.8
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC-CCCcccHHHHHHHHHhcCCH
Q 008097 246 YCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGS-KGRISPYNSVLYGLYRENQQ 324 (577)
Q Consensus 246 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~ 324 (577)
+.+.|+ +.|++.|-++...+.--++.....+...|. ..+.++++.++-...+..... .+|+..+.+|.+.+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 678888888877765556666666665555 578888888887776654343 67788888888888888888
Q ss_pred HHHH
Q 008097 325 DEAL 328 (577)
Q Consensus 325 ~~A~ 328 (577)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7763
No 300
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.24 E-value=22 Score=30.02 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=73.5
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCceehHHHHH---HhhhcCCHHHHHHHHHHHHHcCCCCCHh-hHHHHHH--HHHhcCC
Q 008097 318 LYRENQQDEALEYLKQMEKLFPRAVDRSLKIL---GFCVDGNVEDAKRCFDQMIEEGGVPNVV-IYDCLIH--AYCQEER 391 (577)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~--~~~~~g~ 391 (577)
+.+.+..++|+.-|..+.+..-........+. .....|+...|...|+++-.....|-.. -...+=. .+..+|-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 35667788888888888775433333233332 3557788888888888887753334332 1122222 2345777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 392 VREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 392 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
++......+.+-..+-+.-+..-..|.-+-.+.|++..|.+.|. .+.
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~-qia 194 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFV-QIA 194 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHH-HHH
Confidence 88777777766544422233334556666678888888888888 444
No 301
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.81 E-value=30 Score=31.36 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=54.8
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 008097 184 TITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMK 263 (577)
Q Consensus 184 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 263 (577)
|-+.+...|...+.+..-.++++++.+.++..+-++-.+ .|.. =...|..=|..|....+-..-..+|++..
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~k-------KGtQ-LLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQK-------KGTQ-LLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhh-------ccch-hhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 334566677777777777777776665544333322211 1111 23456667778887777777777777765
Q ss_pred HC-CCCcCHHHHHHHHHH-----HHcCCChHHHHH
Q 008097 264 ID-GISWNFVTYDTLIRG-----LCSGGRIDDGLK 292 (577)
Q Consensus 264 ~~-g~~~~~~~~~~ll~~-----~~~~g~~~~a~~ 292 (577)
.. .--|.+.... +|+- ..+.|++++|..
T Consensus 219 hiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 219 HIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred HhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 32 1233443333 2332 334566776654
No 302
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.80 E-value=11 Score=33.09 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=39.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHH
Q 008097 416 TVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGK--GILPDYLTWNSLLI 492 (577)
Q Consensus 416 ~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~ 492 (577)
..++.+.+.+...+|+...+...+ -+| |...-..+++.|+-+|+|++|..-++-.-+. ...+....|..+|.
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVk-----akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVK-----AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHh-----cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 334455556666666666654444 344 4555556666666666666666555554321 12233455666555
Q ss_pred HH
Q 008097 493 CL 494 (577)
Q Consensus 493 ~~ 494 (577)
+-
T Consensus 81 ~e 82 (273)
T COG4455 81 CE 82 (273)
T ss_pred HH
Confidence 54
No 303
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.48 E-value=0.44 Score=39.33 Aligned_cols=85 Identities=11% Similarity=0.069 Sum_probs=60.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHH
Q 008097 86 ILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVN 165 (577)
Q Consensus 86 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 165 (577)
.++..+.+.+.+....+.++.+.+.+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666777888888888888888776666788889999999999888888887773332 444566666777777777
Q ss_pred HHHHHHHH
Q 008097 166 ALVLLEKS 173 (577)
Q Consensus 166 A~~~~~~m 173 (577)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 76666543
No 304
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.47 E-value=37 Score=32.03 Aligned_cols=139 Identities=14% Similarity=0.139 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCC---CCChhhH
Q 008097 163 LVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGC---LPNVDTY 239 (577)
Q Consensus 163 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~---~p~~~~~ 239 (577)
+++.+.+++.|.+.|+.-+..+|.+....... .+-+...+. ...+..+|+.|.+..+ .++-.++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~-~~~~~~~~~------------~~ra~~iy~~mKk~H~fLTs~~D~~~ 144 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEE-EEKEDYDEI------------IQRAKEIYKEMKKKHPFLTSPEDYPF 144 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHh-cccccHHHH------------HHHHHHHHHHHHHhCccccCccchhH
Confidence 35566788999999999888777765444433 122222222 2345667888877532 2344556
Q ss_pred HHHHHHHHhcCC----hhHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHcCCC--hHHHHHHHHHHHhccCCCCCCcccH
Q 008097 240 NILISSYCETGV----LDSALDVFNDMKIDGISWNF--VTYDTLIRGLCSGGR--IDDGLKILQLMEDSKEGSKGRISPY 311 (577)
Q Consensus 240 ~~li~~~~~~g~----~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~ 311 (577)
..|+.. ...+ .+.+..+|+.+.+.|+..+. ...+.++..+..... ...+.++++.+.+. +.++....|
T Consensus 145 a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~--~~kik~~~y 220 (297)
T PF13170_consen 145 AALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN--GVKIKYMHY 220 (297)
T ss_pred HHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc--CCccccccc
Confidence 666554 3333 35677888888887876543 333444433322222 34677888888887 666666666
Q ss_pred HHHHHHH
Q 008097 312 NSVLYGL 318 (577)
Q Consensus 312 ~~li~~~ 318 (577)
..+.-..
T Consensus 221 p~lGlLa 227 (297)
T PF13170_consen 221 PTLGLLA 227 (297)
T ss_pred cHHHHHH
Confidence 6554433
No 305
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.11 E-value=9.1 Score=32.46 Aligned_cols=60 Identities=22% Similarity=0.228 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCC-----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008097 359 DAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEER-----------VREASELMKEMTGHGYLPIASTFNTVLSGLC 422 (577)
Q Consensus 359 ~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 422 (577)
+|+.-|++.+. +.|+ ..++.++..+|..++. +++|.+.|++..+ ..|+..+|+.-+..+.
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH
Confidence 34444444444 2344 2455555555544331 4445555555554 3566666666665553
No 306
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.03 E-value=33 Score=31.14 Aligned_cols=231 Identities=13% Similarity=0.193 Sum_probs=118.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC---CC--CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc---cCCCCCCccc
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKID---GI--SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDS---KEGSKGRISP 310 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~ 310 (577)
...+|..+.+.|++++....|.+|..- .+ .-+..+.+++++..+.+.+.+.-.++++.-.+. ......--.+
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 344677788888888888888877531 11 223455677777666565655555544432211 0011111123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008097 311 YNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE 390 (577)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (577)
-+.+...|...+.+.+-.+++.++.+. |+..+-++- .+.|. .=...|..=|..|....
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~S--------------Cq~edGedD-------~kKGt-QLLEiYAlEIQmYT~qK 205 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQS--------------CQTEDGEDD-------QKKGT-QLLEIYALEIQMYTEQK 205 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHH--------------hccccCchh-------hhccc-hhhhhHhhHhhhhhhhc
Confidence 345566666666666666666665441 000000000 00111 11345666677777777
Q ss_pred CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHH-----HhcCCHHHHH-HHHHHhhcccCCCCCCCc---ccHHHHHHHHH
Q 008097 391 RVREASELMKEMTGHG-YLPIASTFNTVLSGL-----CRQGNVGTAL-KLVEEDMRGIGRGSLPGS---GHYSPLIKALC 460 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~-----~~~g~~~~a~-~~~~~~m~~~~~~~~p~~---~~~~~li~~~~ 460 (577)
+-.+...++++...-. -.|.+.. ..+++-| .+.|.+++|. .+|+ ..+..+..-.|.. --|-.|.+.+.
T Consensus 206 nNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFE-AFKNYDEsGspRRttCLKYLVLANMLm 283 (440)
T KOG1464|consen 206 NNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFE-AFKNYDESGSPRRTTCLKYLVLANMLM 283 (440)
T ss_pred ccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHH-HHhcccccCCcchhHHHHHHHHHHHHH
Confidence 7777777777765311 2344433 3455555 3677887775 4455 6663222233422 23556666676
Q ss_pred HcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcc
Q 008097 461 EKGGFQSASMLLVQMVGKGIL--PDYLTWNSLLICLSQQT 498 (577)
Q Consensus 461 ~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~ 498 (577)
+.|-- -|+.-..++++ |.....+.|+.+|....
T Consensus 284 kS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~Nd 318 (440)
T KOG1464|consen 284 KSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQNND 318 (440)
T ss_pred HcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhccc
Confidence 66521 12222223444 34455677888875543
No 307
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=83.87 E-value=36 Score=31.48 Aligned_cols=111 Identities=8% Similarity=0.133 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHhh-cCCCCCHhhHHHHHHHHHh-cC-CHhHHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHhHH
Q 008097 60 DIDLARAFYRKKMMA-SGVQGDDYTYAILMKGLCL-TN-RVGDGFKLLHVMKSR-GVKPNSVIYNTLIHSLCKNGKVGRA 135 (577)
Q Consensus 60 ~~~~a~~~~~~~m~~-~~~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A 135 (577)
...+|+.+|+ .... ..+-.|...-..+++.... .+ ....-.++.+.+... |-.++..+...++..+++.+++.+-
T Consensus 143 ~Vv~aL~L~~-~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 143 IVVEALKLYD-GLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHhh-ccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 5567777776 2222 2244566666777766654 22 333334444444432 3466777888889999999999998
Q ss_pred HHHHHhccC-----CCceeHHHHHHHHHhcCChHHHHHHHH
Q 008097 136 RSLMSDMEE-----PNDVTFSILICAYCKEENLVNALVLLE 171 (577)
Q Consensus 136 ~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~ 171 (577)
.++++.... .|...|..+|......|+..-..++.+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 888887653 577889999999999998776655544
No 308
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.71 E-value=26 Score=35.70 Aligned_cols=44 Identities=11% Similarity=0.049 Sum_probs=22.7
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 008097 283 SGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQM 334 (577)
Q Consensus 283 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 334 (577)
+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|...
T Consensus 649 ~lgrl~iA~~la~e~~--------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN--------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhhc--------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 4455555555444332 2334555555555555555555555544
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.65 E-value=2.7 Score=25.43 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
.+++.+...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456677777777777777777777665
No 310
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.53 E-value=26 Score=29.58 Aligned_cols=127 Identities=15% Similarity=0.188 Sum_probs=68.5
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 008097 33 ATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRG 111 (577)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 111 (577)
....+.+.++.|+...+..++..+.+. ++..-..++ ..++-+|.......+-.+. +....+.++=-+|.++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll-----q~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL-----QYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-----hhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 334444556677777777778777777 655444333 3345555554443332222 2223344444444332
Q ss_pred CCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHH
Q 008097 112 VKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLL 170 (577)
Q Consensus 112 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 170 (577)
=...+..+++.+...|++-+|.+...+...-+...-..++.+..+.++..--..+|
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~ 143 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVF 143 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHH
Confidence 01134556667777777777777777765555555555666655555544433333
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.28 E-value=24 Score=28.96 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=33.2
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCcc-hHHHHHHHHHhcCCHhHHHHHHHhccCCC-ceeHHHHHHHH
Q 008097 93 LTNRVGDGFKLLHVMKSRGVKPNSV-IYNTLIHSLCKNGKVGRARSLMSDMEEPN-DVTFSILICAY 157 (577)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~ 157 (577)
...+++++..+++.|.-. .|+.. .-..-...+...|++++|.++|+++.+.. ...|..-+.++
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~ 86 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLAL 86 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHH
Confidence 466677777777666553 23222 11122333566777777777777776533 22444433333
No 312
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.87 E-value=14 Score=27.83 Aligned_cols=87 Identities=14% Similarity=0.055 Sum_probs=57.7
Q ss_pred CHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHh
Q 008097 96 RVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFS 175 (577)
Q Consensus 96 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 175 (577)
..++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||...|.+|-.. +.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 456676666666554322 222222334557788999999999999988999999887543 56777777777777776
Q ss_pred CCCCCCHhhHH
Q 008097 176 FGFVPDVVTIT 186 (577)
Q Consensus 176 ~g~~~~~~~~~ 186 (577)
.| .|....|.
T Consensus 97 sg-~p~lq~Fa 106 (115)
T TIGR02508 97 SG-DPRLQTFV 106 (115)
T ss_pred CC-CHHHHHHH
Confidence 66 44444443
No 313
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=82.42 E-value=1.4 Score=34.95 Aligned_cols=36 Identities=28% Similarity=0.426 Sum_probs=30.8
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008097 458 ALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLS 495 (577)
Q Consensus 458 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 495 (577)
.+...|.-.+|..+|++|++.|-.||. |+.|+.++.
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a~ 139 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEAK 139 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHhc
Confidence 455667888999999999999999987 999998764
No 314
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.94 E-value=75 Score=33.74 Aligned_cols=45 Identities=9% Similarity=0.034 Sum_probs=28.4
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008097 13 IFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVK 58 (577)
Q Consensus 13 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 58 (577)
....+|-.|.|+|++++|.++.....+. .......+-..+..|..
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYAS 157 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTT
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHh
Confidence 3456777888999999999988444332 23444556667777655
No 315
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.78 E-value=19 Score=36.59 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=22.7
Q ss_pred HhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 008097 247 CETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLM 297 (577)
Q Consensus 247 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 297 (577)
.+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34455555555544432 3344555555555555555555555443
No 316
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.35 E-value=12 Score=27.98 Aligned_cols=45 Identities=9% Similarity=0.087 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008097 63 LARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMK 108 (577)
Q Consensus 63 ~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 108 (577)
+.++-+. .+....+-|++....+.+++|.+.+++..|.++++-++
T Consensus 25 e~rr~mN-~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLN-NLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHH-HHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444 34444555666666666666666666666666666554
No 317
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.26 E-value=21 Score=26.99 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHH
Q 008097 60 DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIH 124 (577)
Q Consensus 60 ~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 124 (577)
+.-+.++-+. .+....+-|++....+.+++|.|.+++..|.++++-++.+ ..+....|..++.
T Consensus 25 D~we~rrglN-~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 25 DGWELRRGLN-NLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp -HHHHHHHHH-HHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred cHHHHHHHHH-HHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 4445555555 4555666677777777777777777777777777766543 2222225555543
No 318
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.00 E-value=2.4 Score=26.43 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=9.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHH
Q 008097 189 LELLCSVGRVMDAVEILEESG 209 (577)
Q Consensus 189 l~~~~~~g~~~~a~~~~~~~~ 209 (577)
..+|...|+.+.|++++++++
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 344445555555554444433
No 319
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.72 E-value=2.6 Score=24.13 Aligned_cols=27 Identities=26% Similarity=0.166 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666666666666666654
No 320
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.60 E-value=3.7 Score=24.79 Aligned_cols=29 Identities=3% Similarity=0.005 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhh
Q 008097 11 ESIFITVIRGLGRARMINDVVKATDLVSR 39 (577)
Q Consensus 11 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 39 (577)
..+++.|...|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788889999999999999999888754
No 321
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.39 E-value=2.5 Score=23.93 Aligned_cols=25 Identities=32% Similarity=0.614 Sum_probs=12.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCC
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFP 339 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p 339 (577)
..++.+.|++++|.+.|+++.+..|
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3344445555555555555544444
No 322
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.15 E-value=11 Score=35.26 Aligned_cols=54 Identities=13% Similarity=0.276 Sum_probs=38.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCC-CceehHHHHHHhhhcCCHHHHHHHHHHHHH
Q 008097 316 YGLYRENQQDEALEYLKQMEKLFP-RAVDRSLKILGFCVDGNVEDAKRCFDQMIE 369 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 369 (577)
+-|.+.|.+++|+..+.......| +.+.+..-..+|.+...+..|..-.+..+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 457777888888888877777666 777777777777777777766666655554
No 323
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.51 E-value=3 Score=23.88 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008097 311 YNSVLYGLYRENQQDEALEYLKQMEK 336 (577)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (577)
|..+...|.+.|++++|.+.|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444445555555555555554444
No 324
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.44 E-value=2.3 Score=22.81 Aligned_cols=24 Identities=8% Similarity=0.011 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhccCChhHHHHHHH
Q 008097 12 SIFITVIRGLGRARMINDVVKATD 35 (577)
Q Consensus 12 ~~~~~l~~~~~~~g~~~~a~~~~~ 35 (577)
.+...+..++...|++++|.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678889999999999998876
No 325
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.80 E-value=14 Score=34.74 Aligned_cols=93 Identities=11% Similarity=-0.013 Sum_probs=60.1
Q ss_pred HHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CceehHHHHHHhhhcCC
Q 008097 278 IRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFP-RAVDRSLKILGFCVDGN 356 (577)
Q Consensus 278 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 356 (577)
..-|.+.|.+++|+..|...... .+.+.+++..-..+|.+...+..|..-......+.. -...|+--+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~---~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV---YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc---CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 35688999999999999987764 223778888888899999888887776666554311 11122222233333466
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 008097 357 VEDAKRCFDQMIEEGGVPN 375 (577)
Q Consensus 357 ~~~A~~~~~~~~~~~~~p~ 375 (577)
..+|.+-++..++ +.|+
T Consensus 181 ~~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHHHhHHHHHh--hCcc
Confidence 6666666666666 3555
No 326
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=77.67 E-value=52 Score=29.38 Aligned_cols=137 Identities=16% Similarity=0.214 Sum_probs=79.1
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008097 348 ILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNV 427 (577)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 427 (577)
+..|++.-++.-|...++++.+ | ..+- +-+--|.+..+.+---++.+-....+++-+..-..+++ +...|+.
T Consensus 137 MEiyS~ttRFalaCN~s~KIiE----P-IQSR-CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDM 208 (333)
T KOG0991|consen 137 MEIYSNTTRFALACNQSEKIIE----P-IQSR-CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDM 208 (333)
T ss_pred HHHHcccchhhhhhcchhhhhh----h-HHhh-hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchH
Confidence 4445555566666666666554 2 1222 22233444444333333444334444544444444443 4567888
Q ss_pred HHHHHHHHHhhcccCCCC-----------CCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008097 428 GTALKLVEEDMRGIGRGS-----------LPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQ 496 (577)
Q Consensus 428 ~~a~~~~~~~m~~~~~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 496 (577)
.+|+..++.... .+|. .|.+.....|+..+ ..+++++|.+.+.++-+.|+.|.. +.+++...+..
T Consensus 209 RQalNnLQst~~--g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~K~ 284 (333)
T KOG0991|consen 209 RQALNNLQSTVN--GFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPED-IITTLFRVVKN 284 (333)
T ss_pred HHHHHHHHHHhc--cccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHh
Confidence 888877772222 3322 46666666666554 457899999999999999999887 45556666543
No 327
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=77.19 E-value=13 Score=29.32 Aligned_cols=59 Identities=14% Similarity=0.241 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHH
Q 008097 394 EASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLI 456 (577)
Q Consensus 394 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li 456 (577)
|..+-++.+....+.|++.....-++||.+..++..|.++|+ .++ ..+.+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE-~iK---~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILE-AIK---DKCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHH-HHH---HhcccHHHHHHHHH
Confidence 445556667777789999999999999999999999999999 776 23444444565554
No 328
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.06 E-value=28 Score=30.15 Aligned_cols=85 Identities=20% Similarity=0.164 Sum_probs=37.3
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCcee------hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcC
Q 008097 318 LYRENQQDEALEYLKQMEKLFPRAVD------RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEE 390 (577)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 390 (577)
+.++|++++|..-+..+...-|...+ |..-..++.+.+.++.|+.-..+.++.+ |+ ......-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhhh
Confidence 44556666666555555554333221 2222234444555555555554444421 21 111112223444445
Q ss_pred CHHHHHHHHHHHHh
Q 008097 391 RVREASELMKEMTG 404 (577)
Q Consensus 391 ~~~~A~~~~~~m~~ 404 (577)
.+++|++-|.++.+
T Consensus 183 k~eealeDyKki~E 196 (271)
T KOG4234|consen 183 KYEEALEDYKKILE 196 (271)
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555544
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.58 E-value=41 Score=27.64 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=31.2
Q ss_pred cCCHHHHHHHHHHHhhcCCCceehHHH-HHHhhhcCCHHHHHHHHHHHHHc
Q 008097 321 ENQQDEALEYLKQMEKLFPRAVDRSLK-ILGFCVDGNVEDAKRCFDQMIEE 370 (577)
Q Consensus 321 ~g~~~~A~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~ 370 (577)
.++++++..++..+.-..|+......+ ..-+...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 566677777777776666654433222 23345677777777777777764
No 330
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.34 E-value=1.3e+02 Score=33.15 Aligned_cols=39 Identities=8% Similarity=0.027 Sum_probs=23.2
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc
Q 008097 245 SYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCS 283 (577)
Q Consensus 245 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 283 (577)
.|......+-+...++.+....-.++..-.+.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 355556666667777776655445555556666655543
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.48 E-value=4.1 Score=22.95 Aligned_cols=28 Identities=4% Similarity=0.001 Sum_probs=22.5
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhC
Q 008097 13 IFITVIRGLGRARMINDVVKATDLVSRF 40 (577)
Q Consensus 13 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 40 (577)
++-.+..++.+.|++++|.+.|+.+.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4556777888889999999999988764
No 332
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.23 E-value=1.2e+02 Score=32.53 Aligned_cols=149 Identities=13% Similarity=0.171 Sum_probs=95.9
Q ss_pred CHHHHHHHHHH----HhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhH
Q 008097 10 DESIFITVIRG----LGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTY 84 (577)
Q Consensus 10 ~~~~~~~l~~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~ 84 (577)
++.+...+... +.+.|++++|..-+-+.+.. ..| ..+|.-|... ...+--.+++ .+.+.|+. +...-
T Consensus 363 d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe-~L~~~gla-~~dht 434 (933)
T KOG2114|consen 363 DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLE-ALHKKGLA-NSDHT 434 (933)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHH-HHHHcccc-cchhH
Confidence 34444444444 45789999998877766432 222 2345555555 6666666777 77888865 55566
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChH
Q 008097 85 AILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLV 164 (577)
Q Consensus 85 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 164 (577)
..|+.+|.+.++.++-.+..+... .|.- .+-....+..+.+.+-.++|..+-.+... +...... .+-..++++
T Consensus 435 tlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~i---lle~~~ny~ 507 (933)
T KOG2114|consen 435 TLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDI---LLEDLHNYE 507 (933)
T ss_pred HHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHH---HHHHhcCHH
Confidence 789999999999988776665544 2211 12245667777788888888777666543 2222222 344568899
Q ss_pred HHHHHHHHH
Q 008097 165 NALVLLEKS 173 (577)
Q Consensus 165 ~A~~~~~~m 173 (577)
+|++.+..+
T Consensus 508 eAl~yi~sl 516 (933)
T KOG2114|consen 508 EALRYISSL 516 (933)
T ss_pred HHHHHHhcC
Confidence 999998876
No 333
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.16 E-value=5.9 Score=24.69 Aligned_cols=26 Identities=8% Similarity=-0.043 Sum_probs=22.4
Q ss_pred HHHHHHhccCChhHHHHHHHHHhhCC
Q 008097 16 TVIRGLGRARMINDVVKATDLVSRFN 41 (577)
Q Consensus 16 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 41 (577)
.|..+|...|+.+.|+++++.+...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 57889999999999999999998644
No 334
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=75.03 E-value=54 Score=34.45 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHH
Q 008097 46 LKIFNSILDVLVKEDIDLARAFYR 69 (577)
Q Consensus 46 ~~~~~~li~~~~~~~~~~a~~~~~ 69 (577)
..-|+.+.....++.+++|.+++.
T Consensus 149 p~FW~~v~~lvlrG~~~~a~~lL~ 172 (566)
T PF07575_consen 149 PDFWDYVQRLVLRGLFDQARQLLR 172 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH-
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHH
Confidence 566775555555557777777764
No 335
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.64 E-value=17 Score=31.87 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=29.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 008097 241 ILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 241 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
.-++.+.+.+..++++...++-.+.. +.|.-+-..+++.++-.|++++|..-++..-+.
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 33445555555555555555544431 223333444555555556666665555554444
No 336
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=74.35 E-value=94 Score=31.12 Aligned_cols=284 Identities=15% Similarity=0.064 Sum_probs=145.3
Q ss_pred hhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHH--HHHHHHHHHCCCCc-----------CHHHHHHHH
Q 008097 212 GRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSA--LDVFNDMKIDGISW-----------NFVTYDTLI 278 (577)
Q Consensus 212 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A--~~~~~~m~~~g~~~-----------~~~~~~~ll 278 (577)
...+.++.-.+++..+...|.....+.+|.-...|.+.|..... ++-+..+...-..| +...+....
T Consensus 28 f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~a 107 (696)
T KOG2471|consen 28 FNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFA 107 (696)
T ss_pred cCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhh
Confidence 34455566666677777777766677788888888888875432 22222222211111 111222222
Q ss_pred HHHHcCCChHHHHHHHHHHHhccCCCCCCc--ccHHHHHHHHHhcCCHHHHHHHHHHHhh---c---CCC--ceehHH--
Q 008097 279 RGLCSGGRIDDGLKILQLMEDSKEGSKGRI--SPYNSVLYGLYRENQQDEALEYLKQMEK---L---FPR--AVDRSL-- 346 (577)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~---~---~p~--~~~~~~-- 346 (577)
-.|.....+.+|.++......+-....... .........+....+.++|+.++.-+.+ . .|. ..+-+.
T Consensus 108 Vi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~ 187 (696)
T KOG2471|consen 108 VIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLL 187 (696)
T ss_pred eeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhc
Confidence 223334445555555444333200000000 0111223445566677777766544432 1 111 111111
Q ss_pred ------------------------HHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH-HHHHHhcCCHHHHHHHHHH
Q 008097 347 ------------------------KILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCL-IHAYCQEERVREASELMKE 401 (577)
Q Consensus 347 ------------------------l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~ 401 (577)
-+.+|....++..+.+-...... ...|...+-.+ -.-+.-+|++.+|.+++..
T Consensus 188 kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn--~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~ 265 (696)
T KOG2471|consen 188 KTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMN--IAQDSSMALLLKSQLEYAHGNHPKAMKLLLV 265 (696)
T ss_pred ccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhh--hcCCCcHHHHHHHHHHHHhcchHHHHHHHHh
Confidence 12233333334333333332221 11222222222 2345668999999998765
Q ss_pred HH---hCCC--CCCHH---HHHHHHHHHHhcCCHHHHHHHHHHhhc----ccCCCCCCC-----------cccHHHHHHH
Q 008097 402 MT---GHGY--LPIAS---TFNTVLSGLCRQGNVGTALKLVEEDMR----GIGRGSLPG-----------SGHYSPLIKA 458 (577)
Q Consensus 402 m~---~~g~--~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~m~----~~~~~~~p~-----------~~~~~~li~~ 458 (577)
.- ..|. .|.-. .||.+.-.+.+.|.+.-+..+|.+.++ +...|+.|. ..+|||=+ .
T Consensus 266 sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~-~ 344 (696)
T KOG2471|consen 266 SNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGL-L 344 (696)
T ss_pred cccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhH-H
Confidence 43 2332 22211 235554445667777777777765553 123455553 23455543 5
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcch
Q 008097 459 LCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTT 499 (577)
Q Consensus 459 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 499 (577)
|...|++-.|.+.|.+.... +..++..|-.|..||.-...
T Consensus 345 ~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima~~ 384 (696)
T KOG2471|consen 345 YLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMALQ 384 (696)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHhh
Confidence 77899999999999998764 77899999999999965433
No 337
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.30 E-value=65 Score=28.83 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=15.7
Q ss_pred HHHHcCCChHHHHHHHHHHHhc
Q 008097 279 RGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
..-+..+++.+|+++|+++...
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567888888888887765
No 338
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=74.03 E-value=37 Score=25.97 Aligned_cols=81 Identities=16% Similarity=0.049 Sum_probs=48.8
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHH
Q 008097 94 TNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKS 173 (577)
Q Consensus 94 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 173 (577)
....++|..+.+.+...+- ....+--.-+..+...|++++|...=.....||...|.+|-. .+.|-.+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 4466788888888777653 122333333455778888888854444455688888877643 3677778888877777
Q ss_pred HhCC
Q 008097 174 FSFG 177 (577)
Q Consensus 174 ~~~g 177 (577)
..+|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 6555
No 339
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.21 E-value=1.3e+02 Score=31.92 Aligned_cols=353 Identities=11% Similarity=0.057 Sum_probs=147.1
Q ss_pred CcchHHHHHHHHHhcCCHhHHHHHHHhcc---CCCceeHHHHHHHHHhcCC-------hHHHHHHHHHHHhCCCCCCHh-
Q 008097 115 NSVIYNTLIHSLCKNGKVGRARSLMSDME---EPNDVTFSILICAYCKEEN-------LVNALVLLEKSFSFGFVPDVV- 183 (577)
Q Consensus 115 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~-------~~~A~~~~~~m~~~g~~~~~~- 183 (577)
+..+| ++|-.+.|+|++++|.++..+.. +.....+-..+..|+.+.+ -++...-|++..+.....|++
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK 189 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYK 189 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHH
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHH
Confidence 33445 56777899999999999994444 2445667777888876532 245566677666554433443
Q ss_pred -hHHHHHHHHHh-cCCH-hHHHHHHHHH------HHhhhc--------CChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 008097 184 -TITKVLELLCS-VGRV-MDAVEILEES------GEQGRL--------GKVKGGCRFLKEMERKGCLPNVDTYNILISSY 246 (577)
Q Consensus 184 -~~~~ll~~~~~-~g~~-~~a~~~~~~~------~~~~~~--------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 246 (577)
..-.+|..|-- .... +-+..+=+.+ .+.... -.+++-.+...+..+..+.+ ....-.....+
T Consensus 190 ~AvY~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~~~p~~Yf~~L 268 (613)
T PF04097_consen 190 RAVYKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-GSNPLLYFQVL 268 (613)
T ss_dssp HHHHHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT-------HHHHH
T ss_pred HHHHHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-chhHHHHHHHH
Confidence 22222322211 1111 1111111111 111110 01122222222333333333 11112234556
Q ss_pred HhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHh---cCC
Q 008097 247 CETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYR---ENQ 323 (577)
Q Consensus 247 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~ 323 (577)
.-.|+++.|.+.+-+ ..+...|.+.+...+.-|.-..-.+... ..+...+++.++. .-+..||..|.+ ..+
T Consensus 269 lLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~-ln~arLI~~Y~~~F~~td 342 (613)
T PF04097_consen 269 LLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPP-LNFARLIGQYTRSFEITD 342 (613)
T ss_dssp HHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT----------------------------HHHHHHHHHHTTTTT-
T ss_pred HHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCC-cCHHHHHHHHHHHHhccC
Confidence 678999999998877 2233556666666665543322222211 3332222121111 456778877765 467
Q ss_pred HHHHHHHHHHHhhc-CCCcee-hHHHHH-HhhhcCCHH-----------HHHHHHHHHHHc-CCCCCHhhHH----HHHH
Q 008097 324 QDEALEYLKQMEKL-FPRAVD-RSLKIL-GFCVDGNVE-----------DAKRCFDQMIEE-GGVPNVVIYD----CLIH 384 (577)
Q Consensus 324 ~~~A~~~~~~~~~~-~p~~~~-~~~l~~-~~~~~g~~~-----------~A~~~~~~~~~~-~~~p~~~~~~----~li~ 384 (577)
+.+|++++--+... .|.... +...+. .....++++ .-.-++++-... ++..+..-+. ....
T Consensus 343 ~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~ 422 (613)
T PF04097_consen 343 PREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAAR 422 (613)
T ss_dssp HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHHH
Confidence 88888887776553 222111 000000 000011000 001111110000 1111111122 2223
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHH-HhcCC-----------HHHHHHHHHHhhcccCCC----CC
Q 008097 385 AYCQEERVREASELMKEMTGHGYLPIAS--TFNTVLSGL-CRQGN-----------VGTALKLVEEDMRGIGRG----SL 446 (577)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~-~~~g~-----------~~~a~~~~~~~m~~~~~~----~~ 446 (577)
-+...|++++|+.+|+-..+ .|.+ ..+..++-. ..... ...|..+.+ .... ... +.
T Consensus 423 ~~e~~g~~~dAi~Ly~La~~----~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~-~y~~-~~~~~~~~~ 496 (613)
T PF04097_consen 423 EAEERGRFEDAILLYHLAEE----YDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILE-RYKS-NPHISSKVS 496 (613)
T ss_dssp HHHHCT-HHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHH-HHTT-SHHHHTTS-
T ss_pred HHHHCCCHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHH-HHHh-CcchHhhcc
Confidence 45567888888888876543 2221 233333322 22222 455666666 4431 111 22
Q ss_pred C-CcccHHHHHHH-----HHHcCChhHHHHHHHHHHHCCCCCCH
Q 008097 447 P-GSGHYSPLIKA-----LCEKGGFQSASMLLVQMVGKGILPDY 484 (577)
Q Consensus 447 p-~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~~~~p~~ 484 (577)
+ +..++..|++. +...|++++|++.++++ ++-|..
T Consensus 497 ~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L---~liP~~ 537 (613)
T PF04097_consen 497 RKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL---DLIPLD 537 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT---T-S-S-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCC
Confidence 2 45566666654 56789999999999998 588853
No 340
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=72.96 E-value=38 Score=25.57 Aligned_cols=58 Identities=14% Similarity=0.183 Sum_probs=36.1
Q ss_pred HhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008097 350 GFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTF 414 (577)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 414 (577)
.....|++++|..+.+.+. .||...|-++-. .+.|..+++..-+.+|...| .|....|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3446677777777666653 477777776644 35666676766666776665 4444444
No 341
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=72.46 E-value=52 Score=27.02 Aligned_cols=51 Identities=8% Similarity=0.049 Sum_probs=40.3
Q ss_pred CCceeHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 008097 145 PNDVTFSILICAYCKEEN-LVNALVLLEKSFSFGFVPDVVTITKVLELLCSV 195 (577)
Q Consensus 145 ~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 195 (577)
.+..+|.+++.+..+..- ---+..+|.-|.+.+.++++.-|..+++++.+-
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 456678888888866665 445677888888888899999999999988664
No 342
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=72.38 E-value=69 Score=28.29 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
+..||-+---+...|+++.|.+.|+...+....-+-...|.-|..| -.|++.-|.+-|...-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhc
Confidence 3456666666677788888888888777653222222222222222 247777777766666554
No 343
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.17 E-value=73 Score=28.51 Aligned_cols=19 Identities=16% Similarity=0.087 Sum_probs=12.9
Q ss_pred HHHhcCCHhHHHHHHHhcc
Q 008097 125 SLCKNGKVGRARSLMSDME 143 (577)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~~ 143 (577)
.+.-.+.+++|.++|.+..
T Consensus 23 lfgg~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAA 41 (288)
T ss_pred ccCCCcchHHHHHHHHHHH
Confidence 3455567888888877654
No 344
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=70.71 E-value=1.5e+02 Score=31.51 Aligned_cols=125 Identities=13% Similarity=0.102 Sum_probs=61.0
Q ss_pred HHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHH----H-HHHHHhc-CHHHHHHHHHHHHhh-c--CCCCCHhhHHH
Q 008097 16 TVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNS----I-LDVLVKE-DIDLARAFYRKKMMA-S--GVQGDDYTYAI 86 (577)
Q Consensus 16 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----l-i~~~~~~-~~~~a~~~~~~~m~~-~--~~~~~~~~~~~ 86 (577)
.++..|.+.+... |....+...+.--......|.. + +..+... ++..|.+.++ .+.. . ...|-...+..
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~-~~~~~a~~~~d~~~~v~~~ 182 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQ-SIAQLANQRGDPAVFVLAS 182 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHH-HHHHHhhhcCCHHHHHHHH
Confidence 4455555554444 7777777644211111122222 2 2222233 6777777776 3332 1 12334455555
Q ss_pred HHHHHH--hcCCHhHHHHHHHHHHhCCC---------CCCcchHHHHHHHH--HhcCCHhHHHHHHHhc
Q 008097 87 LMKGLC--LTNRVGDGFKLLHVMKSRGV---------KPNSVIYNTLIHSL--CKNGKVGRARSLMSDM 142 (577)
Q Consensus 87 ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~ 142 (577)
++.+.. +.+..+++.+..+.+..... .|-..+|..+++.+ ...|+++.+...++++
T Consensus 183 l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 183 LSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555544 45556666666666633211 22344555555554 3556666666555444
No 345
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.68 E-value=71 Score=27.71 Aligned_cols=124 Identities=14% Similarity=0.089 Sum_probs=75.1
Q ss_pred HhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHH-----HHHHHHhcCChhHHHHHHHHHHHCCCCcCHH
Q 008097 198 VMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNI-----LISSYCETGVLDSALDVFNDMKIDGISWNFV 272 (577)
Q Consensus 198 ~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 272 (577)
...|...|..+++....+.. +.......+.... ...+|.. +...+...|++++|...++..... |...
T Consensus 50 ~~~AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n---~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De 122 (207)
T COG2976 50 AQEASAQYQNAIKAVQAKKP-KSIAAAEKFVQAN---GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDE 122 (207)
T ss_pred HHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHhhc---cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhH
Confidence 33556666666665444444 3333444555441 1333333 235677899999999999987753 2333
Q ss_pred HHHH-----HHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHH-----HHHHHHhcCCHHHHHHHHHHHhhc
Q 008097 273 TYDT-----LIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNS-----VLYGLYRENQQDEALEYLKQMEKL 337 (577)
Q Consensus 273 ~~~~-----ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~~~~~ 337 (577)
.+.. |.......|.+|+|..+++..... .|.+ -.+.+...|+-++|..-|.+..+.
T Consensus 123 ~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~---------~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 123 NLKALAALRLARVQLQQKKADAALKTLDTIKEE---------SWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc---------cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 3443 345567788999999888876654 2333 235666777777777777766654
No 346
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=69.59 E-value=1.6e+02 Score=31.34 Aligned_cols=181 Identities=17% Similarity=0.258 Sum_probs=101.4
Q ss_pred HHHHHHHHHh-hCCCCC--CHHHHHHHHHHHHhc--CHHHHHHHHHHHHhhcCCCCCHh-----hHHHHHHHHHhcCCHh
Q 008097 29 DVVKATDLVS-RFNMTP--SLKIFNSILDVLVKE--DIDLARAFYRKKMMASGVQGDDY-----TYAILMKGLCLTNRVG 98 (577)
Q Consensus 29 ~a~~~~~~~~-~~~~~~--~~~~~~~li~~~~~~--~~~~a~~~~~~~m~~~~~~~~~~-----~~~~ll~~~~~~~~~~ 98 (577)
.|++.++.+. +..+.| ...+.-.+...+... +++.|...+++...... +++-. .-..++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~-~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCE-RHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 4556666665 333334 345556677777765 89999999884432221 12211 1233455555555544
Q ss_pred HHHHHHHHHHhCCC----CCCcchHHHH-HHHHHhcCCHhHHHHHHHhccC-------CCceeHHHHHHHHH--hcCChH
Q 008097 99 DGFKLLHVMKSRGV----KPNSVIYNTL-IHSLCKNGKVGRARSLMSDMEE-------PNDVTFSILICAYC--KEENLV 164 (577)
Q Consensus 99 ~a~~~~~~~~~~g~----~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~--~~~~~~ 164 (577)
|.+.+++.++.-- .+-...+.-+ +..+...++...|.+.++.+.. +-+..+..++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 8888888766421 1222233333 3333344799999999888763 22233333444433 445567
Q ss_pred HHHHHHHHHHhCCC---------CCCHhhHHHHHHHHH--hcCCHhHHHHHHHHHHHh
Q 008097 165 NALVLLEKSFSFGF---------VPDVVTITKVLELLC--SVGRVMDAVEILEESGEQ 211 (577)
Q Consensus 165 ~A~~~~~~m~~~g~---------~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~ 211 (577)
++++...++..... .|-..+|..+++.++ ..|++..+.+.++.+...
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~ 254 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQF 254 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777766633221 334567777776654 467777887776665443
No 347
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=69.35 E-value=2.8e+02 Score=34.10 Aligned_cols=304 Identities=13% Similarity=0.051 Sum_probs=143.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHhcCCHhHHHHHHH----------HHHHhhhcCChhH
Q 008097 152 ILICAYCKEENLVNALVLLEKSFSFGFV--PDVVTITKVLELLCSVGRVMDAVEILE----------ESGEQGRLGKVKG 219 (577)
Q Consensus 152 ~li~~~~~~~~~~~A~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~----------~~~~~~~~g~~~~ 219 (577)
++..+-.+.+.+.+|+..+++-.....+ ....-|..+...|...++++...-+.. ++......|++..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~~qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSLYQQILEHEASGNWAD 1467 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccHHHHHHHHHhhccHHH
Confidence 4445566778888888888873111101 112233334447888887776554433 3333366777777
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHH-HHHHHcCCChHHHHHHHHHHH
Q 008097 220 GCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTL-IRGLCSGGRIDDGLKILQLME 298 (577)
Q Consensus 220 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~ 298 (577)
|...|+.+.+.+.+ ...+++-++......|.++..+-..+-.... ..+....++++ +.+--+.++++.....+.
T Consensus 1468 a~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~--- 1542 (2382)
T KOG0890|consen 1468 AAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS--- 1542 (2382)
T ss_pred HHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---
Confidence 77777777765322 3556666666666666666666544444322 12222222222 223345555555554443
Q ss_pred hccCCCCCCcccHHHH--HHHHHhcCC--HHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHH-------
Q 008097 299 DSKEGSKGRISPYNSV--LYGLYRENQ--QDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQM------- 367 (577)
Q Consensus 299 ~~~~~~~~~~~~~~~l--i~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~------- 367 (577)
.. +..+|... .....+... .-.-.+..+.+++..-+ -+.+++..|.+..+.++.-++
T Consensus 1543 ~~------n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~------~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1543 DR------NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIE------NLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred cc------cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhh------hHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 11 23333332 222222111 11111122222221000 011112222222222111111
Q ss_pred --HHc--CCCCCH------hhHHHHHHHHHhcCCHHHHHHHHHH-HHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHH
Q 008097 368 --IEE--GGVPNV------VIYDCLIHAYCQEERVREASELMKE-MTGHGYLPI-----ASTFNTVLSGLCRQGNVGTAL 431 (577)
Q Consensus 368 --~~~--~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~-m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~ 431 (577)
.+. +..++. .-|-.-+..-....+..+-+--+++ +......|+ ..+|....+.+..+|.++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 000 122221 1222222211111122222222222 222212222 346888888888899999998
Q ss_pred HHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 008097 432 KLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGK 478 (577)
Q Consensus 432 ~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 478 (577)
..+-+++. .+ -+..+.-....+...|+-..|+.++++-.+.
T Consensus 1691 nall~A~e---~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1691 NALLNAKE---SR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHhhhh---cc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 87763444 22 4566777888889999999999999888754
No 348
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=68.99 E-value=68 Score=27.41 Aligned_cols=114 Identities=15% Similarity=0.117 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHH---HHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCh-hhH
Q 008097 164 VNALVLLEKSFSFGFVPDVVTITK---VLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNV-DTY 239 (577)
Q Consensus 164 ~~A~~~~~~m~~~g~~~~~~~~~~---ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~ 239 (577)
+.|.+.++.-...+ +.|...++. .+.-+++.....++.++++.++ .-|++...- .|+- .++
T Consensus 8 E~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAi------------sK~eeAL~I--~P~~hdAl 72 (186)
T PF06552_consen 8 EHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAI------------SKFEEALKI--NPNKHDAL 72 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHH------------HHHHHHHHH---TT-HHHH
T ss_pred HHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHH------------HHHHHHHhc--CCchHHHH
Confidence 44444444433222 234443333 3334444455566666655543 346666664 3443 455
Q ss_pred HHHHHHHHhcC----C-------hhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 008097 240 NILISSYCETG----V-------LDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 240 ~~li~~~~~~g----~-------~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
..+-.+|...+ + +++|...|++.... .|+..+|+.-+.... +|-+++.++.+.
T Consensus 73 w~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 73 WCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 55555555432 2 45566666665554 789899988887764 466666666654
No 349
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.89 E-value=44 Score=29.02 Aligned_cols=86 Identities=13% Similarity=0.122 Sum_probs=44.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCH-----HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHH-HH---HH
Q 008097 246 YCETGVLDSALDVFNDMKIDGISWNF-----VTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYN-SV---LY 316 (577)
Q Consensus 246 ~~~~g~~~~A~~~~~~m~~~g~~~~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~l---i~ 316 (577)
+.++|++++|..-|.+.+..- ++.. +.|..-..+..+.+..+.|+.-.....+.+ + +|. +| ..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~------p-ty~kAl~RRAe 176 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN------P-TYEKALERRAE 176 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC------c-hhHHHHHHHHH
Confidence 556777777777777776542 2221 223333345556666666666555555441 1 122 11 22
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCC
Q 008097 317 GLYRENQQDEALEYLKQMEKLFP 339 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p 339 (577)
+|.+...+++|++-+.++.+..|
T Consensus 177 ayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCc
Confidence 44445555555555555555444
No 350
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.41 E-value=1.6e+02 Score=30.87 Aligned_cols=15 Identities=13% Similarity=0.445 Sum_probs=8.0
Q ss_pred CChHHHHHHHHHHHh
Q 008097 285 GRIDDGLKILQLMED 299 (577)
Q Consensus 285 g~~~~a~~~~~~~~~ 299 (577)
.+.+.|...|+.+..
T Consensus 263 ~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAE 277 (552)
T ss_pred ccHHHHHHHHHHHHH
Confidence 355555555555543
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=67.88 E-value=1.9e+02 Score=31.53 Aligned_cols=196 Identities=14% Similarity=0.074 Sum_probs=108.8
Q ss_pred HcCCChHHHHHHHHHHHhccCCCCCCcc-------cHHHHHH-HHHhcCCHHHHHHHHHHHhhcCC------CceehHHH
Q 008097 282 CSGGRIDDGLKILQLMEDSKEGSKGRIS-------PYNSVLY-GLYRENQQDEALEYLKQMEKLFP------RAVDRSLK 347 (577)
Q Consensus 282 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------~~~~li~-~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~l 347 (577)
....++++|..+..++... -..|+.. .|+.+-. .....|+++.|.++.+......| ..+.+..+
T Consensus 426 ~s~~r~~ea~~li~~l~~~--l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 426 ASQHRLAEAETLIARLEHF--LKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHccChHHHHHHHHHHHHH--hCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3457889999888887654 1222222 2444332 23456889999999888876543 33445566
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHcCCCCCH---hhHHHHHH--HHHhcCCH--HHHHHHHHHHHhC--CCCC----CHHHH
Q 008097 348 ILGFCVDGNVEDAKRCFDQMIEEGGVPNV---VIYDCLIH--AYCQEERV--REASELMKEMTGH--GYLP----IASTF 414 (577)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~li~--~~~~~g~~--~~A~~~~~~m~~~--g~~p----~~~~~ 414 (577)
..+..-.|+++.|..+..+..+..-.-+. ..|..+.. .+-..|+. .+....|...... +-+| -..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 66777889999998887776654112232 23444432 24455632 2333333333211 1112 22345
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHhhcccCCCCCCCccc--HHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 008097 415 NTVLSGLCR-QGNVGTALKLVEEDMRGIGRGSLPGSGH--YSPLIKALCEKGGFQSASMLLVQMVGKGILP 482 (577)
Q Consensus 415 ~~ll~~~~~-~g~~~~a~~~~~~~m~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 482 (577)
..++.++.+ .+...++..-++ .-. .+...|-..- +.+|+.++...|++++|...+.++......+
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~-~~~--~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIE-VGS--VYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcch-hhh--hcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 556666654 233333333333 222 2223332222 3478888999999999999999988643333
No 352
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=66.27 E-value=11 Score=20.18 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=11.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh
Q 008097 312 NSVLYGLYRENQQDEALEYLKQMEK 336 (577)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~ 336 (577)
..+...+...+++++|...+....+
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3344444444555555444444433
No 353
>PRK11619 lytic murein transglycosylase; Provisional
Probab=65.98 E-value=1.9e+02 Score=30.91 Aligned_cols=115 Identities=9% Similarity=-0.026 Sum_probs=55.9
Q ss_pred CChhHHHHHHHHHHHCC-CCcCH--HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHH
Q 008097 250 GVLDSALDVFNDMKIDG-ISWNF--VTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDE 326 (577)
Q Consensus 250 g~~~~A~~~~~~m~~~g-~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 326 (577)
.+.+.|..++....... ..+.. .++..+....+..+..+++...+...... ..+......-+..-...++++.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~----~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR----SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc----cCCcHHHHHHHHHHHHccCHHH
Confidence 44566666666653322 22221 12223322222222255555555544322 1133334444445557777777
Q ss_pred HHHHHHHHhhcCCCceeh-HHHHHHhhhcCCHHHHHHHHHHHH
Q 008097 327 ALEYLKQMEKLFPRAVDR-SLKILGFCVDGNVEDAKRCFDQMI 368 (577)
Q Consensus 327 A~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~ 368 (577)
+...+..|.....+...| .=+..++...|+.++|...|+.+.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777764421111111 123344455788888888888764
No 354
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=65.30 E-value=21 Score=35.37 Aligned_cols=105 Identities=12% Similarity=0.021 Sum_probs=73.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCceehHHH-HHHhhhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHH
Q 008097 316 YGLYRENQQDEALEYLKQMEKLFPRAVDRSLK-ILGFCVDGNVEDAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEERVR 393 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 393 (577)
..+.+.+.++.|..++.++.+..|+...|... ..++.+.+++..|+.-+.+.++.. |+ ...|-.=..++.+.+++.
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHH
Confidence 34556677888888888888888876655443 367888888888888888888753 33 233444445555666777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008097 394 EASELMKEMTGHGYLPIASTFNTVLSGLCRQ 424 (577)
Q Consensus 394 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 424 (577)
+|+..|+.... +.|+..-+...+.-|-..
T Consensus 90 ~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHhhh--cCcCcHHHHHHHHHHHHH
Confidence 88888877766 678887777777666543
No 355
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=64.61 E-value=61 Score=25.09 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKI 264 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 264 (577)
.-|..|+..|...|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3578888888888888888888888776
No 356
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.54 E-value=1.1e+02 Score=28.23 Aligned_cols=85 Identities=14% Similarity=0.129 Sum_probs=39.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHH
Q 008097 383 IHAYCQEERVREASELMKEMTG--HGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALC 460 (577)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~ 460 (577)
|++++..+++.+++...-+--+ ..++|...-.. |-.|++.|....+.++-...+. +.+ +-+..-|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~--~p~-Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQ--DPS-NQSLPEYGTVAELYL 164 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHh--Ccc-cCCchhhHHHHHHHH
Confidence 4556666666666554333321 11233222222 2245666666666555553333 111 112222555555444
Q ss_pred H-----cCChhHHHHHH
Q 008097 461 E-----KGGFQSASMLL 472 (577)
Q Consensus 461 ~-----~g~~~~A~~~~ 472 (577)
. .|.++||++++
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 3 46666666666
No 357
>PRK09687 putative lyase; Provisional
Probab=64.54 E-value=1.2e+02 Score=28.26 Aligned_cols=76 Identities=16% Similarity=0.024 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 254 SALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQ 333 (577)
Q Consensus 254 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 333 (577)
.+...+..+.. .+|..+-...+.++.+.|+. .+...+-...+. + + .....+.++...|.. +|...+..
T Consensus 192 ~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~--~---~--~~~~a~~ALg~ig~~-~a~p~L~~ 259 (280)
T PRK09687 192 DIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK--G---T--VGDLIIEAAGELGDK-TLLPVLDT 259 (280)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC--C---c--hHHHHHHHHHhcCCH-hHHHHHHH
Confidence 44555554443 34555555566666666653 344444333332 1 1 223445555555553 45555555
Q ss_pred HhhcCCCc
Q 008097 334 MEKLFPRA 341 (577)
Q Consensus 334 ~~~~~p~~ 341 (577)
+.+..||.
T Consensus 260 l~~~~~d~ 267 (280)
T PRK09687 260 LLYKFDDN 267 (280)
T ss_pred HHhhCCCh
Confidence 54443433
No 358
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=64.33 E-value=8.2 Score=30.78 Aligned_cols=32 Identities=31% Similarity=0.547 Sum_probs=23.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 008097 353 VDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAY 386 (577)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 386 (577)
+.|.-.+|..+|.+|++.|.+|| .|+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 44667778888888888888776 677777543
No 359
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.31 E-value=80 Score=25.95 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC---C--CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhcccCCCCCCCccc
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTGHG---Y--LPIASTFNTVLSGLCRQGN-VGTALKLVEEDMRGIGRGSLPGSGH 451 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~--~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~~m~~~~~~~~p~~~~ 451 (577)
..|+++.-.+..+...-.+.+++.+.... + .-+..+|.+++.+.+.... .--+..+|. -|+ +.+.++++..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~-~Lk--~~~~~~t~~d 117 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFN-FLK--KNDIEFTPSD 117 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHH-HHH--HcCCCCCHHH
Confidence 34566665565666666666666553210 0 1223356666666655544 334455555 555 3445556666
Q ss_pred HHHHHHHHHHc
Q 008097 452 YSPLIKALCEK 462 (577)
Q Consensus 452 ~~~li~~~~~~ 462 (577)
|.+|+.++.+-
T Consensus 118 y~~li~~~l~g 128 (145)
T PF13762_consen 118 YSCLIKAALRG 128 (145)
T ss_pred HHHHHHHHHcC
Confidence 66666665543
No 360
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=63.86 E-value=46 Score=25.78 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=23.2
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHh
Q 008097 149 TFSILICAYCKEENLVNALVLLEKSFS 175 (577)
Q Consensus 149 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 175 (577)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 578888888899999999999988876
No 361
>PRK09687 putative lyase; Provisional
Probab=63.77 E-value=1.3e+02 Score=28.17 Aligned_cols=233 Identities=13% Similarity=-0.035 Sum_probs=133.1
Q ss_pred CCCHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCH----hHHHHHHHHHHhCCCCCCcch
Q 008097 43 TPSLKIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRV----GDGFKLLHVMKSRGVKPNSVI 118 (577)
Q Consensus 43 ~~~~~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~g~~~~~~~ 118 (577)
.++.......+.++....-.++...+. .+.. .+|...-...+.++.+.|+. .++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~-~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAI-ELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHH-HHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 356666666666666554455555555 3332 34666666677777777763 4566777666433 356666
Q ss_pred HHHHHHHHHhcCCH-----hHHHHHHHh-ccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 008097 119 YNTLIHSLCKNGKV-----GRARSLMSD-MEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELL 192 (577)
Q Consensus 119 ~~~li~~~~~~g~~-----~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 192 (577)
-...+.++...+.. .++...+.. +..++...-...+.++.+.++ .+++..+-.+.+ .+|...-...+.++
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aL 183 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFAL 183 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 66666666665432 233444433 334555555666777777766 567777777665 34555555555666
Q ss_pred HhcCC-HhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH
Q 008097 193 CSVGR-VMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNF 271 (577)
Q Consensus 193 ~~~g~-~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 271 (577)
.+.+. ...+...+.. +.. .+|..+-...+.++.+.|+. .|+..+-...+.+ +
T Consensus 184 g~~~~~~~~~~~~L~~-------------------~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~- 236 (280)
T PRK09687 184 NSNKYDNPDIREAFVA-------------------MLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T- 236 (280)
T ss_pred hcCCCCCHHHHHHHHH-------------------Hhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c-
Confidence 65431 2344443222 111 24666667777788888774 4555555555432 2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH
Q 008097 272 VTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL 318 (577)
Q Consensus 272 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 318 (577)
.....+.++...|.. +|...+..+... .+|..+-...+.++
T Consensus 237 -~~~~a~~ALg~ig~~-~a~p~L~~l~~~----~~d~~v~~~a~~a~ 277 (280)
T PRK09687 237 -VGDLIIEAAGELGDK-TLLPVLDTLLYK----FDDNEIITKAIDKL 277 (280)
T ss_pred -hHHHHHHHHHhcCCH-hHHHHHHHHHhh----CCChhHHHHHHHHH
Confidence 234677778888875 677777777653 22555555545444
No 362
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=63.68 E-value=1.7e+02 Score=29.54 Aligned_cols=86 Identities=10% Similarity=0.033 Sum_probs=59.1
Q ss_pred CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHH---HcCChhHHHHHHHHHHHCCCC
Q 008097 407 YLPIASTF-NTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALC---EKGGFQSASMLLVQMVGKGIL 481 (577)
Q Consensus 407 ~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~ 481 (577)
..|+..|+ +.++.-+...|-.++|...+. .+.. .+| +...|..+|..-. .+| +.-+.++++.|... +-
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~-~l~~----lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~-fg 527 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYK-SLQE----LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALRE-FG 527 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHH-HHHh----CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHH-hC
Confidence 35777765 456777788899999999998 5551 334 7778888886533 233 77788888888753 33
Q ss_pred CCHHHHHHHHHHHHhcch
Q 008097 482 PDYLTWNSLLICLSQQTT 499 (577)
Q Consensus 482 p~~~~~~~ll~~~~~~~~ 499 (577)
.|+..|.-.+.--..+|.
T Consensus 528 ~d~~lw~~y~~~e~~~g~ 545 (568)
T KOG2396|consen 528 ADSDLWMDYMKEELPLGR 545 (568)
T ss_pred CChHHHHHHHHhhccCCC
Confidence 677778777666555554
No 363
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.55 E-value=47 Score=24.39 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=22.8
Q ss_pred hcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHH
Q 008097 128 KNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNA 166 (577)
Q Consensus 128 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 166 (577)
..|+.+.|+++++.++ +..-.|..++.++-..|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466666666666666 5566666666666665554433
No 364
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=62.99 E-value=32 Score=21.86 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=27.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008097 457 KALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLI 492 (577)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 492 (577)
...-+.|-..++..++++|.+.|+.-+...+..++.
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344567788888888888888888877777776664
No 365
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=62.25 E-value=58 Score=33.27 Aligned_cols=105 Identities=8% Similarity=0.071 Sum_probs=54.9
Q ss_pred HHhhcCCCCCHhh--HHHHHHHHH-hcCCHhHHHHHHHHHHhCCCCCCc---chHHHHHHHHHhcCCHhHHHHHHHhccC
Q 008097 71 KMMASGVQGDDYT--YAILMKGLC-LTNRVGDGFKLLHVMKSRGVKPNS---VIYNTLIHSLCKNGKVGRARSLMSDMEE 144 (577)
Q Consensus 71 ~m~~~~~~~~~~~--~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~ 144 (577)
.|...|.+.++.. +..+...|= -.|+..+|...+....-. .|+. ...-+|...+-+.|...+|--++....+
T Consensus 200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf--~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~ 277 (886)
T KOG4507|consen 200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHF--SSRHNKDIALLSLATVLHRAGFSADAAVILHAALD 277 (886)
T ss_pred HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhh--CCcccccchhhhHHHHHHHcccccchhheeehhcc
Confidence 3444444433332 233333333 367777777766555432 2221 2334555666777777777666654443
Q ss_pred -CCce--eHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 008097 145 -PNDV--TFSILICAYCKEENLVNALVLLEKSFSFG 177 (577)
Q Consensus 145 -~~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~g 177 (577)
.+.+ .+-.+-++++..+.+...+.-|+...+.|
T Consensus 278 dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~ 313 (886)
T KOG4507|consen 278 DADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQAR 313 (886)
T ss_pred CCccccccceeHHHHHHHHhhhhhhhhhhhhhhccC
Confidence 1211 13445566666677666666666665554
No 366
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=61.61 E-value=1.9e+02 Score=29.29 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHH-HHHhc-CHHHHHHHHHHHHh
Q 008097 7 SPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILD-VLVKE-DIDLARAFYRKKMM 73 (577)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~-~~~~a~~~~~~~m~ 73 (577)
++.|+..|..-+..+.+.+.+.+...+|..|...+| .++..|-.-.. -|-.+ +++.|+.+|.+.++
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp-~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHP-NNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 455888999999999899999999999999988653 24444433222 23345 78999999984433
No 367
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=61.06 E-value=2.2e+02 Score=29.95 Aligned_cols=27 Identities=15% Similarity=0.115 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHh
Q 008097 12 SIFITVIRGLGRARMINDVVKATDLVS 38 (577)
Q Consensus 12 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 38 (577)
..|-..+..+.-.|.++.|.+++....
T Consensus 149 p~FW~~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWDYVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhcc
Confidence 355568888888999999999996554
No 368
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=61.06 E-value=87 Score=27.88 Aligned_cols=67 Identities=12% Similarity=0.033 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCC-------HHHHHHHHHHhhcccCCCCCC--CcccHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 008097 413 TFNTVLSGLCRQGN-------VGTALKLVEEDMRGIGRGSLP--GSGHYSPLIKALCEKGGFQSASMLLVQMVGKG 479 (577)
Q Consensus 413 ~~~~ll~~~~~~g~-------~~~a~~~~~~~m~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 479 (577)
.+.-+...|...|+ ...|.+.|.+.....+.++.+ .....-.+..+..|.|+.++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34445556666666 344555555444422222222 22334455667778888888888888887543
No 369
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=59.40 E-value=2.2e+02 Score=29.42 Aligned_cols=403 Identities=11% Similarity=0.030 Sum_probs=214.9
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHH-Hhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHH
Q 008097 14 FITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVL-VKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGL 91 (577)
Q Consensus 14 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~ 91 (577)
+..|+.---.....+.+..+++.++.. .|...-|=.-..-+ .+- ..+.+..+|++.. .|++.....|...+..+
T Consensus 48 wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv--~aip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 48 WTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGV--QAIPLSVDLWLSYLAFL 123 (577)
T ss_pred hHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHH
Confidence 344444444444456666677777532 34444322222222 223 7788888888433 24555666677666655
Q ss_pred H-hcCCHhHHHHHHHHHHhC-CCC-CCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHH---hc-----
Q 008097 92 C-LTNRVGDGFKLLHVMKSR-GVK-PNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYC---KE----- 160 (577)
Q Consensus 92 ~-~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~---~~----- 160 (577)
. ..|+.+.....|+..... |.. .+...|...|..-..++++.....+++++.+-....++..-.-|. +.
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~ 203 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKI 203 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhh
Confidence 5 467777777777777653 321 244567778877788888899999998887644444444333332 22
Q ss_pred -CChHHHHHHHHHHHhC----CCCCCHhhHHHHHHHHHh-cCCHhHHHHHHHHHHHh-----hhcCChhHHHHHHHHHHH
Q 008097 161 -ENLVNALVLLEKSFSF----GFVPDVVTITKVLELLCS-VGRVMDAVEILEESGEQ-----GRLGKVKGGCRFLKEMER 229 (577)
Q Consensus 161 -~~~~~A~~~~~~m~~~----g~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~-----~~~g~~~~a~~~~~~~~~ 229 (577)
...+++.++-...... -..+....+..-++-... .+..+++.......... ...-...+.+..|+.-..
T Consensus 204 l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ik 283 (577)
T KOG1258|consen 204 LLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIK 283 (577)
T ss_pred hcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcc
Confidence 1223333222211110 001111222222211111 12222332222221111 011111122222332222
Q ss_pred c---CCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Q 008097 230 K---GCL----PNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE 302 (577)
Q Consensus 230 ~---~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 302 (577)
. .++ ++..+|..-+.--...|+.+.+.-+|+...-.- ..=...|--.+.-....|+.+-|..++....+-..
T Consensus 284 rpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~ 362 (577)
T KOG1258|consen 284 RPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHV 362 (577)
T ss_pred ccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC
Confidence 1 112 245678888888889999999999999876311 11123344444444445999998888877665422
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehH-HHHHHhhhcCCHHHHH---HHHHHHHHcCCCCCHhh
Q 008097 303 GSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRS-LKILGFCVDGNVEDAK---RCFDQMIEEGGVPNVVI 378 (577)
Q Consensus 303 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~ 378 (577)
...|.+....+. ..-..|++..|..+++.+.+..|+.+... .-+..-.+.|+.+.+. .++...... .-+...
T Consensus 363 k~~~~i~L~~a~--f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i 438 (577)
T KOG1258|consen 363 KKTPIIHLLEAR--FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGI 438 (577)
T ss_pred CCCcHHHHHHHH--HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcch
Confidence 222222222222 23346799999999999988667654432 2344556778888877 333333321 223333
Q ss_pred HHHHHHHHH-----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008097 379 YDCLIHAYC-----QEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGN 426 (577)
Q Consensus 379 ~~~li~~~~-----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 426 (577)
.+.+.--++ -.++.+.|..++.++.+. ++++...|..+++.+...+.
T Consensus 439 ~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 439 LEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCc
Confidence 333333333 357899999999999975 45667778888888776653
No 370
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=59.16 E-value=1.5e+02 Score=27.55 Aligned_cols=69 Identities=19% Similarity=0.149 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHH
Q 008097 413 TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVG-----KGILPDYLT 486 (577)
Q Consensus 413 ~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 486 (577)
+++.+.+.|..+|.+.+|.++.++.+. +.| +...|-.++..|...|+--+|.+-++++.+ .|+..|..+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt-----ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT-----LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh-----cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 456667788899999999999885444 566 777788888999999987666666666542 356555443
No 371
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.82 E-value=1.2e+02 Score=27.93 Aligned_cols=88 Identities=13% Similarity=-0.056 Sum_probs=57.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHh-
Q 008097 242 LISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYR- 320 (577)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~- 320 (577)
=|.+++..+++.+++...-+--+.--+.-......-|-.|.+.+.+..+.++-..-... ...-+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~--p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQD--PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC--cccCCchhhHHHHHHHHHH
Confidence 47888889999988776655443221222344444555688999998888887766553 222244457777766654
Q ss_pred ----cCCHHHHHHHH
Q 008097 321 ----ENQQDEALEYL 331 (577)
Q Consensus 321 ----~g~~~~A~~~~ 331 (577)
.|.+++|.++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 58888887776
No 372
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.44 E-value=18 Score=38.48 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHH
Q 008097 390 ERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSAS 469 (577)
Q Consensus 390 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 469 (577)
.++++.+.+.+...--| .++|.-+.+.|..+-|+.+.+ .-+ . -..+....|+++.|+
T Consensus 607 k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVk-D~~-----t---------RF~LaLe~gnle~al 663 (1202)
T KOG0292|consen 607 KKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVK-DER-----T---------RFELALECGNLEVAL 663 (1202)
T ss_pred hhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeec-Ccc-----h---------heeeehhcCCHHHHH
Confidence 45566655544432211 123444456677777766665 111 1 123355677888887
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHhhhhhhhhHHHHHhhH
Q 008097 470 MLLVQMVGKGILPDYLTWNSLLICLSQQTTWLLLLL-LNEMVSFVMVVHELSAKEKRCKLRSLN 532 (577)
Q Consensus 470 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (577)
+.-++.- |..+|..|...-..+||-.+.+. .+...++..|+-.|--.|..+++++++
T Consensus 664 e~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL~Km~ 721 (1202)
T KOG0292|consen 664 EAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKLSKMM 721 (1202)
T ss_pred HHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHHHHHH
Confidence 7776662 56678888887777777777664 345555555665555566666666554
No 373
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=58.22 E-value=2.2e+02 Score=28.96 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=14.3
Q ss_pred cCCCCccccccCCCeeeEEEecchh
Q 008097 536 HGAGSVWLGLRIHDTTHTFIIDRRV 560 (577)
Q Consensus 536 ~~~g~~~~~~~~~~~~~~~~~~~~~ 560 (577)
+..+.|.. +++.++|++++|++.
T Consensus 636 qnas~ssk--~lgk~l~~lLVgq~y 658 (711)
T COG1747 636 QNASTSSK--RLGKKLWTLLVGQRY 658 (711)
T ss_pred cccCcchH--HHHHHHHHHHhcccc
Confidence 44555555 446677777777654
No 374
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=56.78 E-value=1.7e+02 Score=27.28 Aligned_cols=115 Identities=10% Similarity=0.079 Sum_probs=79.4
Q ss_pred cCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCCh
Q 008097 389 EERVREASELMKEMTG-HGYLPIASTFNTVLSGLCR-QG-NVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGF 465 (577)
Q Consensus 389 ~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~g-~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~ 465 (577)
+..+.+|+++|+...- ..+--|..+...+++.... .+ ....--++.+ .+. ..++-.++..+..+++..++..++|
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~-~l~-~t~~~~l~~~vi~~Il~~L~~~~dW 218 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVD-FLV-STFSKSLTRNVIISILEILAESRDW 218 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHH-HHH-hccccCCChhHHHHHHHHHHhcccH
Confidence 3445677777774321 2344566666666666644 22 2222233333 333 2556778888999999999999999
Q ss_pred hHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcchHHHHHH
Q 008097 466 QSASMLLVQMVGK-GILPDYLTWNSLLICLSQQTTWLLLLL 505 (577)
Q Consensus 466 ~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~ 505 (577)
.+-.++++.-... +..-|...|..+|.....+|+.++...
T Consensus 219 ~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 219 NKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred HHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 9999999998754 445678889999999999999876543
No 375
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=55.67 E-value=2e+02 Score=27.73 Aligned_cols=60 Identities=10% Similarity=-0.001 Sum_probs=27.8
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHcCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 345 SLKILGFCVDGNVEDAKRCFDQMIEEGGVP---NVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 345 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
..+...+.+.|.++.|...+.++...+..+ ++...-.-....-..|+..+|+..+++...
T Consensus 150 l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 150 LKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444445555555555555554421111 122222333444455666666666665554
No 376
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=55.34 E-value=47 Score=23.86 Aligned_cols=47 Identities=6% Similarity=0.024 Sum_probs=22.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-CH-HHHHHHHHHHHhcCCHHHHHHHH
Q 008097 388 QEERVREASELMKEMTGHGYLP-IA-STFNTVLSGLCRQGNVGTALKLV 434 (577)
Q Consensus 388 ~~g~~~~A~~~~~~m~~~g~~p-~~-~~~~~ll~~~~~~g~~~~a~~~~ 434 (577)
...+-++|+..|....+.-..| +. .++..++.+++..|++++.+.+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555332222 21 24555555666666665555543
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=54.90 E-value=20 Score=25.68 Aligned_cols=16 Identities=6% Similarity=0.061 Sum_probs=7.5
Q ss_pred CCChHHHHHHHHHHHh
Q 008097 284 GGRIDDGLKILQLMED 299 (577)
Q Consensus 284 ~g~~~~a~~~~~~~~~ 299 (577)
..+.++|+..+....+
T Consensus 19 ~~~~~~Al~~W~~aL~ 34 (80)
T PF10579_consen 19 QNETQQALQKWRKALE 34 (80)
T ss_pred cchHHHHHHHHHHHHh
Confidence 3444444444444444
No 378
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.20 E-value=3.6e+02 Score=29.92 Aligned_cols=27 Identities=7% Similarity=0.025 Sum_probs=21.7
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhh
Q 008097 13 IFITVIRGLGRARMINDVVKATDLVSR 39 (577)
Q Consensus 13 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 39 (577)
-|..|+..|...|+.++|++++....+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 367788888888888888888888755
No 379
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.87 E-value=3e+02 Score=28.91 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=29.1
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHH----H-HHhcCChhHHHHHHHHHHH
Q 008097 216 KVKGGCRFLKEMERKGCLPNVDTYNILIS----S-YCETGVLDSALDVFNDMKI 264 (577)
Q Consensus 216 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~ 264 (577)
+...+..+++.....| +...-..+.. + +....+++.|+..|+.+.+
T Consensus 227 ~~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 4567888888877765 3333222222 2 3456678888888888876
No 380
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.93 E-value=60 Score=20.64 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=21.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008097 387 CQEERVREASELMKEMTGHGYLPIASTFNTVLS 419 (577)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 419 (577)
-+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 355666677777777777777766666665553
No 381
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=51.62 E-value=76 Score=33.00 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCCh------hHHHHHHHHHHHCCCCCCHHHHHH
Q 008097 416 TVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGF------QSASMLLVQMVGKGILPDYLTWNS 489 (577)
Q Consensus 416 ~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~~~~~ 489 (577)
+++.+|...|++..+.++++ ..-....|-+.-...||..++-..+.|.+ +.|.+++++.. +.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~-s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLK-SFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHH-HHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 45555555555555555555 33311122222233344444444445543 23344444443 3445555555
Q ss_pred HHHH
Q 008097 490 LLIC 493 (577)
Q Consensus 490 ll~~ 493 (577)
|+.+
T Consensus 109 l~~~ 112 (1117)
T COG5108 109 LCQA 112 (1117)
T ss_pred HHHh
Confidence 5444
No 382
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=50.82 E-value=66 Score=21.06 Aligned_cols=30 Identities=7% Similarity=-0.064 Sum_probs=15.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008097 383 IHAYCQEERVREASELMKEMTGHGYLPIASTF 414 (577)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 414 (577)
.-++.+.|++++|.+..+.+.+ +.|+..-.
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa 37 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE--IEPDNRQA 37 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH--HTTS-HHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--hCCCcHHH
Confidence 3455566666666666666665 34554433
No 383
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.44 E-value=79 Score=27.51 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=24.9
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 372 GVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 372 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
..|++..|..++.++...|+.++|.+..+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 457777777777777777887777777777765
No 384
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=50.10 E-value=2.1e+02 Score=26.40 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=16.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFN 260 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~ 260 (577)
|......+...|.+.|++.+|...|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 45556666777777887777776553
No 385
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=49.56 E-value=1.3e+02 Score=23.93 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008097 60 DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSR 110 (577)
Q Consensus 60 ~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 110 (577)
+--+.++-+. .+....+-|++......+++|.+.+++..|.++|+-++..
T Consensus 64 D~wEvrkglN-~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 64 DGWEVRKGLN-NLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred hHHHHHHHHH-hhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3334444455 4555666777777777777777777777777777766543
No 386
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=48.68 E-value=25 Score=23.86 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=11.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 008097 381 CLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
.+|.+|.+.|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555555555555555555443
No 387
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=48.44 E-value=2.9e+02 Score=27.52 Aligned_cols=73 Identities=12% Similarity=0.096 Sum_probs=42.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhh
Q 008097 276 TLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCV 353 (577)
Q Consensus 276 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 353 (577)
.|+.-|...|++.+|.+.+.++.-. .-...+++.+++.+.-+.|+-..-+.+++..-+. ..+|-+.+-.+|.+
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmP---fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s--glIT~nQMtkGf~R 586 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMP---FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS--GLITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCC---cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CceeHHHhhhhhhh
Confidence 4566677777777777777665322 1123455667777777777766555555554332 34455555555543
No 388
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=47.98 E-value=2.1e+02 Score=25.85 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=25.3
Q ss_pred HHcCCChHHHHHHHHHHHhccCCCCCCc-ccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 008097 281 LCSGGRIDDGLKILQLMEDSKEGSKGRI-SPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA 341 (577)
Q Consensus 281 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 341 (577)
|....+++.|+..+.+.... .|.. .-|+.-+-++.+..+++.+..--.+..+..|+.
T Consensus 20 ~f~~k~y~~ai~~y~raI~~----nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~ 77 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI----NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL 77 (284)
T ss_pred ccchhhhchHHHHHHHHHhc----CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH
Confidence 33344455555555444433 2222 223344444445555555544444444444443
No 389
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=47.70 E-value=36 Score=31.68 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 008097 150 FSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKV 188 (577)
Q Consensus 150 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l 188 (577)
||..|...++.|++++|+.++++..+.|+.--..+|...
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 678888899999999999999999888876544555433
No 390
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=47.53 E-value=2.1e+02 Score=25.60 Aligned_cols=64 Identities=8% Similarity=0.102 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCC---CHhhH--HHHHHHHHhcCCHhHHHHHHHHHH
Q 008097 42 MTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQG---DDYTY--AILMKGLCLTNRVGDGFKLLHVMK 108 (577)
Q Consensus 42 ~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~---~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~ 108 (577)
+.+...-.|.|+--|.-. .+.+|.+.|. ...|+.| |..++ ..-|......|+++.|.+....+.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa---~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFA---KESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhc---cccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 344555566666555555 8888887776 4555555 22222 223444556677777766665553
No 391
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=47.19 E-value=2.2e+02 Score=25.80 Aligned_cols=56 Identities=11% Similarity=0.006 Sum_probs=39.6
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--CHHHHHHHHH
Q 008097 14 FITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE--DIDLARAFYR 69 (577)
Q Consensus 14 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~a~~~~~ 69 (577)
+..++..+-..|+++++.+.+..+...++..+..--|.+-.+|-.. ....+.+.+.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~ 61 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILS 61 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhh
Confidence 4567788889999999999999999887777877777777666543 4445555554
No 392
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.68 E-value=1.8e+02 Score=31.63 Aligned_cols=174 Identities=14% Similarity=0.136 Sum_probs=99.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh----hhcCChhHHHHHHHHHHHcCCCC
Q 008097 159 KEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ----GRLGKVKGGCRFLKEMERKGCLP 234 (577)
Q Consensus 159 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~g~~~~a~~~~~~~~~~~~~p 234 (577)
-+.++++.+.+.+...--| .++|.-+.+.|..+-|+.+.+.-..+ ..+|+++.|++.-..+-
T Consensus 605 i~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkld------ 670 (1202)
T KOG0292|consen 605 LNKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKLD------ 670 (1202)
T ss_pred HhhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhcC------
Confidence 3456666666555432222 23455556677777666654433322 56788888876654443
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+..+|..|.......|+.+-|...|++...- + -|--.|.-.|+.++-.++......++ |.. ..
T Consensus 671 d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf----e-----kLsfLYliTgn~eKL~Km~~iae~r~-----D~~---~~ 733 (1202)
T KOG0292|consen 671 DKDVWERLGEEALRQGNHQIAEMCYQRTKNF----E-----KLSFLYLITGNLEKLSKMMKIAEIRN-----DAT---GQ 733 (1202)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh----h-----heeEEEEEeCCHHHHHHHHHHHHhhh-----hhH---HH
Confidence 6788999999999999999999999887632 2 22223555677777777666554431 211 11
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEE 370 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 370 (577)
...-.-.|+.++-.+++...-.. +..| ..-...|.-+.|.++.++....
T Consensus 734 ~qnalYl~dv~ervkIl~n~g~~---~lay----lta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 734 FQNALYLGDVKERVKILENGGQL---PLAY----LTAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHHhccHHHHHHHHHhcCcc---cHHH----HHHhhcCcHHHHHHHHHhhccc
Confidence 11122345666655555544221 0111 1112456667777777776653
No 393
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=46.58 E-value=60 Score=22.04 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=7.2
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 008097 243 ISSYCETGVLDSALDVFND 261 (577)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~ 261 (577)
|.+|...|++++|.+..++
T Consensus 30 I~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 3344444444444433333
No 394
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=46.41 E-value=2.7e+02 Score=26.64 Aligned_cols=96 Identities=7% Similarity=-0.091 Sum_probs=58.1
Q ss_pred ChhhHHHHHHHHHhcC------------ChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Q 008097 235 NVDTYNILISSYCETG------------VLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE 302 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g------------~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 302 (577)
|+.+|-.++..--..- -.+.-+.++++.++.+ +-+...+...+..+.+..+.++..+-++.+....+
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~ 96 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP 96 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Confidence 6778877776433221 1345567777777663 34556666777777777777777788888877633
Q ss_pred CCCCCcccHHHHHHHHHh---cCCHHHHHHHHHHH
Q 008097 303 GSKGRISPYNSVLYGLYR---ENQQDEALEYLKQM 334 (577)
Q Consensus 303 ~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~ 334 (577)
+ +...|...+..... .-.++....+|.+.
T Consensus 97 ~---~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 97 G---SPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred C---ChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 3 55666666655433 22344444444443
No 395
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.91 E-value=3.1e+02 Score=27.04 Aligned_cols=87 Identities=10% Similarity=0.014 Sum_probs=45.8
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHc--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCCCHHHHH
Q 008097 347 KILGFCVDGNVEDAKRCFDQMIEE--GGVPNVVIYDCLIHAYCQEERVREASELMKEMTGH---------GYLPIASTFN 415 (577)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~~~~~~ 415 (577)
+.+.|..||+++.|.+.|.+.... ..+-.+..|-.+|..-.-.|+|........+.... -+.+-...+.
T Consensus 156 l~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~a 235 (466)
T KOG0686|consen 156 LGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAA 235 (466)
T ss_pred HHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHH
Confidence 455666777777777777764432 01112233444454445566666666666555532 1233344455
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 008097 416 TVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 416 ~ll~~~~~~g~~~~a~~~~~ 435 (577)
.+...+.+ ++..|.+.|-
T Consensus 236 gLa~L~lk--kyk~aa~~fL 253 (466)
T KOG0686|consen 236 GLANLLLK--KYKSAAKYFL 253 (466)
T ss_pred HHHHHHHH--HHHHHHHHHH
Confidence 55444443 6666666655
No 396
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=45.13 E-value=2.1e+02 Score=25.57 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=9.6
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 008097 384 HAYCQEERVREASELMKEMT 403 (577)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~m~ 403 (577)
......|+.++|++...+..
T Consensus 72 r~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 72 RRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHhccHHHHHHHHHHhC
Confidence 33444555555555544443
No 397
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=44.62 E-value=53 Score=17.89 Aligned_cols=27 Identities=15% Similarity=0.317 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 008097 356 NVEDAKRCFDQMIEEGGVPNVVIYDCLI 383 (577)
Q Consensus 356 ~~~~A~~~~~~~~~~~~~p~~~~~~~li 383 (577)
+.+.|..+|+++... .+-+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~-~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEK-FPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHH-CCCChHHHHHHH
Confidence 445555666665553 223444454443
No 398
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.11 E-value=3.3e+02 Score=26.89 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=35.5
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCHh--hHHHHHHHHHh--cCCHHHHHHHHHHHHhC
Q 008097 352 CVDGNVEDAKRCFDQMIEEGGVPNVV--IYDCLIHAYCQ--EERVREASELMKEMTGH 405 (577)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 405 (577)
...+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3667888888888888776 444443 45555555554 45678888888887653
No 399
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=42.29 E-value=97 Score=20.27 Aligned_cols=36 Identities=11% Similarity=0.081 Sum_probs=25.0
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 008097 14 FITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNS 51 (577)
Q Consensus 14 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 51 (577)
+..+.-++.+.|+++.|++..+.+++ ..|+-.-...
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~ 39 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHH
Confidence 44567788899999999999999988 4565443333
No 400
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.74 E-value=55 Score=30.53 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=33.4
Q ss_pred CCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008097 374 PNVV-IYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVL 418 (577)
Q Consensus 374 p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 418 (577)
||.. -|+..|..-.+.|++++|+.++++..+.|+.--..+|...+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 4443 46688888888999999999999999888765555664433
No 401
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=41.70 E-value=2.4e+02 Score=24.56 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=10.5
Q ss_pred HHcCChhHHHHHHHHHH
Q 008097 460 CEKGGFQSASMLLVQMV 476 (577)
Q Consensus 460 ~~~g~~~~A~~~~~~m~ 476 (577)
.+.|++++|.++++-|.
T Consensus 132 l~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 132 LRKGSFEEAERFLKFME 148 (204)
T ss_pred HHhccHHHHHHHHHHHH
Confidence 34566666666666665
No 402
>PRK10941 hypothetical protein; Provisional
Probab=41.40 E-value=3e+02 Score=25.61 Aligned_cols=79 Identities=14% Similarity=0.011 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHH
Q 008097 414 FNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGK-GILPDYLTWNSLL 491 (577)
Q Consensus 414 ~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll 491 (577)
.+.+-.+|.+.++++.|+++.+..+. +.| ++.-+.--.-+|.+.|.+..|..=++...+. +-.|+.......+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~-----l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ-----FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 34455677788888888888884444 566 4555666677788888888888877777643 2345566666666
Q ss_pred HHHHhc
Q 008097 492 ICLSQQ 497 (577)
Q Consensus 492 ~~~~~~ 497 (577)
......
T Consensus 259 ~~l~~~ 264 (269)
T PRK10941 259 HSIEQK 264 (269)
T ss_pred HHHhhc
Confidence 665443
No 403
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=40.91 E-value=4.1e+02 Score=27.12 Aligned_cols=63 Identities=8% Similarity=-0.011 Sum_probs=33.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
+-..+-.++..|..+ ..++-..+++++.+..+. |.+.-.-|...|-+ ++.+.+...|.++..+
T Consensus 98 ~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 98 SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH-hchhhHHHHHHHHHHH
Confidence 444556666666666 455566666666554322 33333333343333 6666666666665543
No 404
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=40.37 E-value=3.9e+02 Score=26.69 Aligned_cols=72 Identities=14% Similarity=0.127 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC--CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008097 415 NTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP--GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLI 492 (577)
Q Consensus 415 ~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 492 (577)
..|+.-|.-.|++.+|.+.++ .+. ++- ....+-+++.+.-+.|+-..-+.+++...+. ...|-+.+-.
T Consensus 513 ~~LLeEY~~~GdisEA~~Cik-eLg-----mPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s----glIT~nQMtk 582 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIK-ELG-----MPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS----GLITTNQMTK 582 (645)
T ss_pred HHHHHHHHhccchHHHHHHHH-HhC-----CCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CceeHHHhhh
Confidence 445666667777777777766 433 221 3445666666666666655555666655332 3344455555
Q ss_pred HHHh
Q 008097 493 CLSQ 496 (577)
Q Consensus 493 ~~~~ 496 (577)
+|-+
T Consensus 583 Gf~R 586 (645)
T KOG0403|consen 583 GFER 586 (645)
T ss_pred hhhh
Confidence 5533
No 405
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=39.41 E-value=1.6e+02 Score=21.92 Aligned_cols=54 Identities=20% Similarity=0.227 Sum_probs=28.6
Q ss_pred HhcCChHHHHHHHHHHHh----CCCCCC----HhhHHHHHHHHHhcCCHhHHHHHHHHHHHh
Q 008097 158 CKEENLVNALVLLEKSFS----FGFVPD----VVTITKVLELLCSVGRVMDAVEILEESGEQ 211 (577)
Q Consensus 158 ~~~~~~~~A~~~~~~m~~----~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 211 (577)
.+.|++.+|.+.+.+... .+..+. ......+.......|++++|.+.++++++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456666666554444432 222221 122233444566678888888877666554
No 406
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.25 E-value=5.3e+02 Score=27.90 Aligned_cols=96 Identities=8% Similarity=0.134 Sum_probs=59.9
Q ss_pred HHHHhc-CHHHHHHHHHHHHhhcCCCC---CHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 008097 54 DVLVKE-DIDLARAFYRKKMMASGVQG---DDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKN 129 (577)
Q Consensus 54 ~~~~~~-~~~~a~~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 129 (577)
.-+.+. .+++|+++-+ ...|..| -...+...|..+.-.|++++|-...-.|... +..-|---+..++..
T Consensus 364 ~Wll~~k~yeeAl~~~k---~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAK---ASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHhhHHHHHHHHHH---hccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 344455 7788887766 2233344 2334666777777888888888888777653 556666666666666
Q ss_pred CCHhHHHHHHHhccC----CCceeHHHHHHHHHh
Q 008097 130 GKVGRARSLMSDMEE----PNDVTFSILICAYCK 159 (577)
Q Consensus 130 g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~ 159 (577)
++.... +.-++. -+...|..++..+..
T Consensus 437 ~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 665543 333332 234567777777765
No 407
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=39.02 E-value=3.2e+02 Score=28.12 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHhccCC--CceeH---HHHHHHHHhcCChHHHHHHHHHHHh
Q 008097 120 NTLIHSLCKNGKVGRARSLMSDMEEP--NDVTF---SILICAYCKEENLVNALVLLEKSFS 175 (577)
Q Consensus 120 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~li~~~~~~~~~~~A~~~~~~m~~ 175 (577)
..++.-|.+.+++++|..++..|.-. ....| +.+.+.+.+..--.+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 46788899999999999999998731 22233 3334444444434444444444443
No 408
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=37.90 E-value=1.3e+02 Score=26.16 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=19.7
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 008097 305 KGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFP 339 (577)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 339 (577)
.|+...+..++..+...|+.++|.+...++....|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34555555555555556666666555555555444
No 409
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=37.55 E-value=1.8e+02 Score=24.00 Aligned_cols=60 Identities=10% Similarity=0.063 Sum_probs=38.0
Q ss_pred HHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC
Q 008097 71 KMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGK 131 (577)
Q Consensus 71 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 131 (577)
.+.+.|.+++.. -..++..+.+.++.-.|.++|+.+.+.+...+..|.-.-++.+...|-
T Consensus 11 ~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 11 RLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 445666665543 345677777777778888888888887766555444334455555553
No 410
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.49 E-value=28 Score=32.85 Aligned_cols=95 Identities=15% Similarity=0.030 Sum_probs=58.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCc-ccHHHHHHHHHHcCChh
Q 008097 388 QEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGS-GHYSPLIKALCEKGGFQ 466 (577)
Q Consensus 388 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~-~~~~~li~~~~~~g~~~ 466 (577)
..|.+++|++.|...+..+ .|....|..-.+++.+.++...|++=+...+. +.||. .-|-.--.+-.-.|+|+
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e-----in~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE-----INPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc-----cCcccccccchhhHHHHHhhchH
Confidence 3566777777777777643 33444555556667777777777766664333 55532 23333333344467888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH
Q 008097 467 SASMLLVQMVGKGILPDYLTWN 488 (577)
Q Consensus 467 ~A~~~~~~m~~~~~~p~~~~~~ 488 (577)
+|...+....+.++.+....|-
T Consensus 200 ~aa~dl~~a~kld~dE~~~a~l 221 (377)
T KOG1308|consen 200 EAAHDLALACKLDYDEANSATL 221 (377)
T ss_pred HHHHHHHHHHhccccHHHHHHH
Confidence 8888888887777766665553
No 411
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=36.43 E-value=3.3e+02 Score=24.72 Aligned_cols=84 Identities=11% Similarity=-0.040 Sum_probs=44.8
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHH-HHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcc-cHHHHHHHHHhcCC
Q 008097 246 YCETGVLDSALDVFNDMKIDGISWNFVT-YDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRIS-PYNSVLYGLYRENQ 323 (577)
Q Consensus 246 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~ 323 (577)
|.....++.|...|.+.+.. .|+..+ |+.=+..+.+..+++.+..--....+. .|+.+ .-..+.........
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql----~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL----DPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc----ChHHHHHHHHHHHHHHhhcc
Confidence 44555677777766655543 555533 344555566666666666555554443 12222 22233344555566
Q ss_pred HHHHHHHHHHHh
Q 008097 324 QDEALEYLKQME 335 (577)
Q Consensus 324 ~~~A~~~~~~~~ 335 (577)
+++|+..+.+..
T Consensus 94 ~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 94 YDEAIKVLQRAY 105 (284)
T ss_pred ccHHHHHHHHHH
Confidence 666666666653
No 412
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.37 E-value=2.7e+02 Score=24.03 Aligned_cols=22 Identities=14% Similarity=0.344 Sum_probs=14.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 008097 383 IHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 4456666777777777766654
No 413
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=36.24 E-value=60 Score=32.29 Aligned_cols=99 Identities=18% Similarity=0.086 Sum_probs=44.3
Q ss_pred HhcCChhHHHHHHHHHHHCCCCcCHHHHH-HHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHH
Q 008097 247 CETGVLDSALDVFNDMKIDGISWNFVTYD-TLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQD 325 (577)
Q Consensus 247 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 325 (577)
...+.++.|..++.+.++. .||-..|- .=..++.+.+++..|..=+..+.+.++. ....|..=..++.+.+.+.
T Consensus 15 l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~---~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT---YIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred cccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch---hhheeeeccHHHHhHHHHH
Confidence 3445555555555555543 34333322 2224555555555555555444443110 1111222223333444455
Q ss_pred HHHHHHHHHhhcCCCceehHHHHHH
Q 008097 326 EALEYLKQMEKLFPRAVDRSLKILG 350 (577)
Q Consensus 326 ~A~~~~~~~~~~~p~~~~~~~l~~~ 350 (577)
+|+..|+......|+.......++-
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 5555555555555555544444443
No 414
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=36.13 E-value=1.7e+02 Score=21.39 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=32.5
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChH
Q 008097 102 KLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLV 164 (577)
Q Consensus 102 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 164 (577)
.++..+.+.|+ .+....-...+...+.++|.++++.++.+...+|..+..++-..|...
T Consensus 20 ~v~~~L~~~~V----lt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 20 YLWDHLLSRGV----FTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred HHHHHHHhcCC----CCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 45555555543 222223233334455666777777777766666666666666555443
No 415
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=36.08 E-value=4.5e+02 Score=26.15 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHhccC-----------CCceeHHHHHHHHHhcCChHHHHHHHHHHH
Q 008097 119 YNTLIHSLCKNGKVGRARSLMSDMEE-----------PNDVTFSILICAYCKEENLVNALVLLEKSF 174 (577)
Q Consensus 119 ~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 174 (577)
...|++.++-.||+..|+++++.+.- -.+.++-.+.-+|.-.+++.+|++.|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888888888877652 123455556667778888888888887653
No 416
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=35.33 E-value=1.9e+02 Score=21.53 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=16.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 008097 382 LIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+.......|++++|.+.+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 44556667888888888877763
No 417
>PHA02875 ankyrin repeat protein; Provisional
Probab=35.07 E-value=4.6e+02 Score=26.02 Aligned_cols=194 Identities=9% Similarity=-0.024 Sum_probs=89.3
Q ss_pred HHHHHcCCCCChhh--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHH--HHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 008097 225 KEMERKGCLPNVDT--YNILISSYCETGVLDSALDVFNDMKIDGISWNFV--TYDTLIRGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 225 ~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
+.+.+.|..|+... ..+.+...+..|+.+-+ +.+.+.|..|+.. ...+.+...+..|+.+....+++.-...
T Consensus 19 ~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~ 94 (413)
T PHA02875 19 RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFA 94 (413)
T ss_pred HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcc
Confidence 33445666665432 23344555667776543 4444555554432 1123344555678887766666532111
Q ss_pred cCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC---H
Q 008097 301 KEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKL-FPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN---V 376 (577)
Q Consensus 301 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~ 376 (577)
....+..-.+.+ ...+..|+.+-+..+++.-... .++.... +.+...+..|+.+-...++ +.|..++ .
T Consensus 95 --~~~~~~~g~tpL-~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~-tpLh~A~~~~~~~~v~~Ll----~~g~~~~~~d~ 166 (413)
T PHA02875 95 --DDVFYKDGMTPL-HLATILKKLDIMKLLIARGADPDIPNTDKF-SPLHLAVMMGDIKGIELLI----DHKACLDIEDC 166 (413)
T ss_pred --cccccCCCCCHH-HHHHHhCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHH----hcCCCCCCCCC
Confidence 000011112233 3344566665444444432211 1122222 3344445667765544443 4443333 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHH
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTF---NTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~ 435 (577)
.-++.+..+ +..|+.+ +.+.+.+.|..|+.... .+.+......|..+-+.-+++
T Consensus 167 ~g~TpL~~A-~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 167 CGCTPLIIA-MAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred CCCCHHHHH-HHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence 333444433 3456543 44555667766664321 234443456677765555544
No 418
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.04 E-value=2.3e+02 Score=22.58 Aligned_cols=42 Identities=14% Similarity=0.280 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHH
Q 008097 359 DAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEERVREASELMK 400 (577)
Q Consensus 359 ~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 400 (577)
.+..+|..|..+|+-.. ..-|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555554433222 2334444444445555555555544
No 419
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=34.80 E-value=4.2e+02 Score=25.40 Aligned_cols=125 Identities=10% Similarity=0.038 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh---cCCHHHHHH
Q 008097 357 VEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCR---QGNVGTALK 432 (577)
Q Consensus 357 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~---~g~~~~a~~ 432 (577)
.+.-+.++++.++. .+.+...+..++..+.+....++..+.++++... .| +...|...|..+.. .-.++....
T Consensus 47 ~E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 34455667776665 2345666677777777777777777778777764 24 45556666655433 223555555
Q ss_pred HHHHhhccc---CCCC----CCCcccHHHHH-------HHHHHcCChhHHHHHHHHHHHCCC-CCCH
Q 008097 433 LVEEDMRGI---GRGS----LPGSGHYSPLI-------KALCEKGGFQSASMLLVQMVGKGI-LPDY 484 (577)
Q Consensus 433 ~~~~~m~~~---~~~~----~p~~~~~~~li-------~~~~~~g~~~~A~~~~~~m~~~~~-~p~~ 484 (577)
+|.+.+... ..+. .+...+...++ ..+..+|..+.|..+++-+.+-.+ .|+.
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPES 190 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccc
Confidence 555433311 1111 11222333333 345568999999999998887665 3443
No 420
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=34.79 E-value=2e+02 Score=23.63 Aligned_cols=47 Identities=19% Similarity=0.131 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 008097 150 FSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVG 196 (577)
Q Consensus 150 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 196 (577)
-..++..+.+.++.-.|.++|+++.+.+...+..|.-..++.+...|
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34455555556555667777777776666666666555556655555
No 421
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=34.71 E-value=5.5e+02 Score=26.78 Aligned_cols=145 Identities=12% Similarity=-0.017 Sum_probs=81.7
Q ss_pred cCHHHHHHHHHHHHcC--CChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--ceeh
Q 008097 269 WNFVTYDTLIRGLCSG--GRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR--AVDR 344 (577)
Q Consensus 269 ~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~ 344 (577)
|+..+...++.-.... ..-+-|..++-.|.. ...|-..+.|...--+.-.|+...|...+..+....|. .+..
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~---~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINK---PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC---CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 4555554444333222 122334444444433 22333333333333344567888888888777665553 3444
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008097 345 SLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVL 418 (577)
Q Consensus 345 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 418 (577)
..+.....+.|...+|-.++.+..... ...+.++-.+..+|....+.+.|++.|++..+.. .-+.+.-+.++
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~ 717 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLK 717 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHH
Confidence 455555666677777777777776653 2345566777788888888888888888877643 12344444443
No 422
>PHA02875 ankyrin repeat protein; Provisional
Probab=34.43 E-value=4.8e+02 Score=25.95 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHCCCC
Q 008097 466 QSASMLLVQMVGKGIL 481 (577)
Q Consensus 466 ~~A~~~~~~m~~~~~~ 481 (577)
++..+-++.|....+.
T Consensus 297 ~~C~~ei~~mk~~~i~ 312 (413)
T PHA02875 297 EKCIIELRRIKSEKIG 312 (413)
T ss_pred HHHHHHHHHHHhhccC
Confidence 3455667777765444
No 423
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=34.17 E-value=96 Score=17.83 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHH
Q 008097 357 VEDAKRCFDQMIEEGGVPNVVIYD 380 (577)
Q Consensus 357 ~~~A~~~~~~~~~~~~~p~~~~~~ 380 (577)
++.|..+|++... +.|++.+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 4455555555554 235555554
No 424
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=34.09 E-value=2.9e+02 Score=29.11 Aligned_cols=94 Identities=12% Similarity=0.109 Sum_probs=60.6
Q ss_pred HHHHHHhccCChhHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhc-CH--HHHHHHHHHHHhhcCCCCCHhhHHHHHHH
Q 008097 16 TVIRGLGRARMINDVVKATDLVSRF--NMTPSLKIFNSILDVLVKE-DI--DLARAFYRKKMMASGVQGDDYTYAILMKG 90 (577)
Q Consensus 16 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~-~~--~~a~~~~~~~m~~~~~~~~~~~~~~ll~~ 90 (577)
+|+.+|...|++-.+.++++..... |.+.-...+|..|+.+.++ .+ .+..+-..+.+...-+.-|..||..++.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 8999999999999999999998654 2333466788888888886 43 23333222233344466788888888776
Q ss_pred HHhcCCHhHHHHHHHHHHh
Q 008097 91 LCLTNRVGDGFKLLHVMKS 109 (577)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~ 109 (577)
....-.-.-.+-++.+++.
T Consensus 113 sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 113 SLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred hcChHhHHhccHHHHHHHH
Confidence 5543333333444444443
No 425
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=33.86 E-value=5.3e+02 Score=26.64 Aligned_cols=56 Identities=20% Similarity=0.193 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGHGYLPI--ASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
...++.-|.+.+++++|+.++..|.-.. .+. ....+.+.+...+...-.+....++
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~-~g~~C~~~L~~I~n~Ll~~pl~~ere~~le 468 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNT-MGEQCFHCLSAIVNHLLRQPLTPEREAQLE 468 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccc-cHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 3456677888888888888888876322 111 1133444555556555555555555
No 426
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.49 E-value=6.9e+02 Score=27.54 Aligned_cols=268 Identities=14% Similarity=0.101 Sum_probs=119.3
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCc--chHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChH
Q 008097 87 LMKGLCLTNRVGDGFKLLHVMKSRGVKPNS--VIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLV 164 (577)
Q Consensus 87 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 164 (577)
+=+.|...|++++|+++-+.- |+. .++-.-.+.|.+.+++..|-+++.++.+ ++..+.--+....+.+
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~----~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS----SFEEVALKFLEINQER 433 (911)
T ss_pred HHHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh----hHHHHHHHHHhcCCHH
Confidence 445677778888887764322 222 2333445667777888888888888733 3444443444444444
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHH-----H-HhcCCHh----HHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCC
Q 008097 165 NALVLLEKSFSFGFVPDVVTITKVLEL-----L-CSVGRVM----DAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLP 234 (577)
Q Consensus 165 ~A~~~~~~m~~~g~~~~~~~~~~ll~~-----~-~~~g~~~----~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p 234 (577)
++..|-.=+-..++|...+-..++.. | .+.++++ ++.+-++.-.+ ...+.|..... ...
T Consensus 434 -~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~--------~~~re~~~~~~--~~~ 502 (911)
T KOG2034|consen 434 -ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYD--------EVQREFSKFLV--LHK 502 (911)
T ss_pred -HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHH--------HHHHHHHHHHH--hhH
Confidence 55444332223344544443332222 2 1222222 22222111100 01011111100 001
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+.....+....+...|+.+....+-.-|.. |..++.-+.+.+.+++|.+++..-... ...-..
T Consensus 503 ~~~nretv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~--------el~yk~ 565 (911)
T KOG2034|consen 503 DELNRETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNP--------ELFYKY 565 (911)
T ss_pred HhhhHHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccch--------hhHHHh
Confidence 222233344445556666666555444432 455666777777888877776544211 110000
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhc---CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVD---GNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEER 391 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 391 (577)
.--.....+.+....+.......|... ...++..+.+. -....+....+-....-..-++..+|.++..|+.+.+
T Consensus 566 -ap~Li~~~p~~tV~~wm~~~d~~~~~l-i~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~ 643 (911)
T KOG2034|consen 566 -APELITHSPKETVSAWMAQKDLDPNRL-IPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER 643 (911)
T ss_pred -hhHHHhcCcHHHHHHHHHccccCchhh-hHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc
Confidence 000111223333333333322222111 12222233322 2233444444444443333577888888888887765
Q ss_pred HHH
Q 008097 392 VRE 394 (577)
Q Consensus 392 ~~~ 394 (577)
-+.
T Consensus 644 ~~l 646 (911)
T KOG2034|consen 644 DDL 646 (911)
T ss_pred cch
Confidence 433
No 427
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=32.99 E-value=2.5e+02 Score=24.23 Aligned_cols=22 Identities=9% Similarity=0.282 Sum_probs=14.4
Q ss_pred HHHhhhcCCHHHHHHHHHHHHH
Q 008097 348 ILGFCVDGNVEDAKRCFDQMIE 369 (577)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~ 369 (577)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3456666777777777776665
No 428
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.65 E-value=6.7e+02 Score=27.11 Aligned_cols=203 Identities=10% Similarity=0.075 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCccc---HHHHHHHHHhcCCHHHHHH
Q 008097 253 DSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISP---YNSVLYGLYRENQQDEALE 329 (577)
Q Consensus 253 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~ 329 (577)
....++++...-..-.-....+-+=+.-....-+-++--..+.+|..+ -..|++.+ ...++-.|....+++...+
T Consensus 145 ~R~kq~Lk~vq~~ssah~REkflsD~RkAR~~y~G~~l~~~L~~mR~R--lDnp~VL~~d~V~nlmlSyRDvQdY~amir 222 (1226)
T KOG4279|consen 145 HRMKQVLKSVQVESSAHSREKFLSDLRKAREIYDGDQLNDYLDKMRTR--LDNPDVLHPDTVSNLMLSYRDVQDYDAMIR 222 (1226)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhh--cCCccccCHHHHHHHHhhhccccchHHHHH
Q ss_pred HHHHHhhcCCC---------ceehHHHHHHhhhcCCHHHHHHHHHHHHHc--CCCCCHhhHH-------HHHHHHHhcCC
Q 008097 330 YLKQMEKLFPR---------AVDRSLKILGFCVDGNVEDAKRCFDQMIEE--GGVPNVVIYD-------CLIHAYCQEER 391 (577)
Q Consensus 330 ~~~~~~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~-------~li~~~~~~g~ 391 (577)
+.+.+..+... ...|...+.---+.|+-++|+...-.+.+. .+.||..... .+-+.|-..+.
T Consensus 223 LVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s 302 (1226)
T KOG4279|consen 223 LVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAES 302 (1226)
T ss_pred HHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhh
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHH
Q 008097 392 VREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASML 471 (577)
Q Consensus 392 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 471 (577)
.+.|.+.|++.-+ +.|+...=..+...+...|..=+--.-++ .+. ..|-..++|.|.++.-.++
T Consensus 303 ~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~Fens~Elq-~Ig-------------mkLn~LlgrKG~leklq~Y 366 (1226)
T KOG4279|consen 303 LNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHFENSLELQ-QIG-------------MKLNSLLGRKGALEKLQEY 366 (1226)
T ss_pred HHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhccchHHHH-HHH-------------HHHHHHhhccchHHHHHHH
Q ss_pred HH
Q 008097 472 LV 473 (577)
Q Consensus 472 ~~ 473 (577)
|+
T Consensus 367 Wd 368 (1226)
T KOG4279|consen 367 WD 368 (1226)
T ss_pred Hh
No 429
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=32.31 E-value=3.4e+02 Score=23.64 Aligned_cols=69 Identities=16% Similarity=0.112 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC------CCceeHHHHHH-HHHhcCC--hHHHHH
Q 008097 98 GDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE------PNDVTFSILIC-AYCKEEN--LVNALV 168 (577)
Q Consensus 98 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~~~--~~~A~~ 168 (577)
+++.++-.++.. +...+-.....|++++|..-++++.+ .-...|..+.. +++.++. +-+|.-
T Consensus 20 EE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 20 EEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHH
Confidence 445555555543 22333344566778887777777653 23445666665 5666554 345665
Q ss_pred HHHHHHh
Q 008097 169 LLEKSFS 175 (577)
Q Consensus 169 ~~~~m~~ 175 (577)
++.-...
T Consensus 91 l~~~l~~ 97 (204)
T COG2178 91 LYSILKD 97 (204)
T ss_pred HHHHHhc
Confidence 5555543
No 430
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=31.87 E-value=4.5e+02 Score=24.92 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=47.6
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcC
Q 008097 347 KILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHG-YLPIASTFNTVLSGLCRQG 425 (577)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g 425 (577)
++....+.|+.+.-..+++.... .++......++.+++...+.+...++++.....+ +++.. ...++.++...+
T Consensus 175 v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d--~~~~~~~~~~~~ 249 (324)
T PF11838_consen 175 VYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQD--IRYVLAGLASSN 249 (324)
T ss_dssp HHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTT--HHHHHHHHH-CS
T ss_pred HHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHH--HHHHHHHHhcCC
Confidence 33444455665554455554443 3566777788888888888888888888887654 54433 233444554344
Q ss_pred CH--HHHHHHHHH
Q 008097 426 NV--GTALKLVEE 436 (577)
Q Consensus 426 ~~--~~a~~~~~~ 436 (577)
.. +.++.++.+
T Consensus 250 ~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 250 PVGRDLAWEFFKE 262 (324)
T ss_dssp TTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH
Confidence 43 777777663
No 431
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=31.73 E-value=2.1e+02 Score=21.10 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=23.4
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHH
Q 008097 283 SGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEA 327 (577)
Q Consensus 283 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 327 (577)
..|+.+.|.+++..+. + ....+...++++.+.|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-r------g~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-Q------KEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-c------CCcHHHHHHHHHHHcCchhhh
Confidence 4567777777777766 4 233566666666666655444
No 432
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=31.54 E-value=1.1e+02 Score=21.05 Aligned_cols=51 Identities=16% Similarity=0.170 Sum_probs=36.1
Q ss_pred cCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 008097 143 EEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCS 194 (577)
Q Consensus 143 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 194 (577)
..+....++.++..+++..-.+.++..+.++...|. .+..+|..-++.+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 345566778888888888888888888888888874 466666666666554
No 433
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=31.46 E-value=7.3e+02 Score=27.22 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHhccC-CC-ceeHHHH-HHHHHhcC
Q 008097 121 TLIHSLCKNGKVGRARSLMSDMEE-PN-DVTFSIL-ICAYCKEE 161 (577)
Q Consensus 121 ~li~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~l-i~~~~~~~ 161 (577)
.++.-+.++|+.+.|.++..+... ++ ...|... ..+|.++-
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~~~~~l~~~f~~y~~A~~~~~ 373 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKDFFEKLAELFPTYFNAYAKNL 373 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhcCC
Confidence 466778899999999999888764 21 2233332 56666553
No 434
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=31.19 E-value=2.8e+02 Score=26.16 Aligned_cols=76 Identities=13% Similarity=0.215 Sum_probs=38.8
Q ss_pred HHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHH----------hcCCHhHH
Q 008097 66 AFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLC----------KNGKVGRA 135 (577)
Q Consensus 66 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~----------~~g~~~~A 135 (577)
++|+ .|.+.++.|.-++|.=+.-.+++.=.+.....+++.+... ..-+..|+..|+ -.|++..-
T Consensus 264 EL~~-~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 264 ELWR-HLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHH-HHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3454 4555556665555444444445555555666666665542 111333333332 23667777
Q ss_pred HHHHHhccCCCc
Q 008097 136 RSLMSDMEEPND 147 (577)
Q Consensus 136 ~~~~~~~~~~~~ 147 (577)
.++++.-+.-|+
T Consensus 338 mkLLQ~yp~tdi 349 (370)
T KOG4567|consen 338 MKLLQNYPTTDI 349 (370)
T ss_pred HHHHhcCCCCCH
Confidence 777666554443
No 435
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.02 E-value=2e+02 Score=24.40 Aligned_cols=49 Identities=16% Similarity=0.073 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 008097 150 FSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRV 198 (577)
Q Consensus 150 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 198 (577)
-..++..+...++.-.|.++++.+.+.+..++..|....|..+.+.|-+
T Consensus 28 R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 28 RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3344444545555566777777777776666666666666666665543
No 436
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=30.47 E-value=11 Score=29.54 Aligned_cols=16 Identities=38% Similarity=0.241 Sum_probs=12.8
Q ss_pred ccCcccccccccccCC
Q 008097 561 EIGHVFCSSSSLKDVD 576 (577)
Q Consensus 561 ~~~~~~~~~~~~~~~~ 576 (577)
..||++.++.++|+++
T Consensus 29 ~~~~~~~~~~~~~~~~ 44 (116)
T PF14432_consen 29 EEGYVPDTKEVGHDVD 44 (116)
T ss_pred HcCCcchhhhhCCCch
Confidence 4578999999988775
No 437
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=30.20 E-value=1.2e+03 Score=29.31 Aligned_cols=61 Identities=13% Similarity=-0.002 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008097 271 FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK 336 (577)
Q Consensus 271 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (577)
..+|....+...+.|+++.|...+-...+. . -...+--...-..+.|+...|+.++++..+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~--r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKES--R---LPEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhc--c---cchHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 456777888888899999998877666554 2 223455556677889999999999998875
No 438
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=29.82 E-value=4.5e+02 Score=24.26 Aligned_cols=82 Identities=20% Similarity=0.193 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHH
Q 008097 270 NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKIL 349 (577)
Q Consensus 270 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~ 349 (577)
|+.....+...|.+.|++.+|+.-|-.-... +...+..++.-+...|...++--+ ..-.+-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~------~~~~~~~ll~~~~~~~~~~e~dlf-------------i~RaVL 149 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDP------SAFAYVMLLEEWSTKGYPSEADLF-------------IARAVL 149 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HH------HHHHHHHHHHHHHHHTSS--HHHH-------------HHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCCh------hHHHHHHHHHHHHHhcCCcchhHH-------------HHHHHH
Confidence 5566677777888888888887766433221 222222233333333333322111 122234
Q ss_pred HhhhcCCHHHHHHHHHHHHHc
Q 008097 350 GFCVDGNVEDAKRCFDQMIEE 370 (577)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~~ 370 (577)
.|...+++..|...++...+.
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 566778888888888777654
No 439
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.77 E-value=1.9e+02 Score=26.49 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=21.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008097 383 IHAYCQEERVREASELMKEMT----GHGY-LPIASTFNTVLSGLCRQGNVGTALKL 433 (577)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m~----~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~ 433 (577)
..-|.+.|++++|.++|+.+. +.|. .+...+...+..++.+.|+.+....+
T Consensus 185 A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 344444445555554444442 1121 12233344444444555555554443
No 440
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=29.55 E-value=4.5e+02 Score=24.22 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-----CcccHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 416 TVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-----GSGHYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 416 ~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
.++.-|.+.|+++.|-.++- .+...+ +... +...-..++......|+|+-+.++.+=+.
T Consensus 184 dLf~~cl~~~~l~tAa~yLl-Vl~~~e-~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~ 247 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLL-VLQNLE-GSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLK 247 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHH-HHHhcC-CcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 45666777777777776665 554211 2222 23334455666677788888888777665
No 441
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.55 E-value=1.6e+02 Score=20.32 Aligned_cols=50 Identities=12% Similarity=0.152 Sum_probs=33.8
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008097 374 PNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQ 424 (577)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 424 (577)
|....++.++..++...-.++++..+.++.+.|. .+..+|.--++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 5556677788888877777888888888887774 4555666656555543
No 442
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=29.40 E-value=20 Score=23.63 Aligned_cols=33 Identities=24% Similarity=0.247 Sum_probs=26.4
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008097 463 GGFQSASMLLVQMVGKGILPDYLTWNSLLICLS 495 (577)
Q Consensus 463 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 495 (577)
|-.++...+|+.|+++...|....|+-.|+-+.
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~ 38 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDYS 38 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHHH
Confidence 455778899999999988898888987776553
No 443
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=28.51 E-value=3.7e+02 Score=22.83 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=37.8
Q ss_pred HHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHh
Q 008097 71 KMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVG 133 (577)
Q Consensus 71 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 133 (577)
.+...|++.+.. -..++..+....+.-.|.++++.+.+.+...+..|.-.-++.+.+.|-+.
T Consensus 16 ~L~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 16 LCAQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 344556654433 23455555555666677888888887776666655555556666666543
No 444
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=27.95 E-value=8.9e+02 Score=27.10 Aligned_cols=52 Identities=17% Similarity=0.032 Sum_probs=28.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCcCHHHHHHHHHHHHcCCC
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKI-DGISWNFVTYDTLIRGLCSGGR 286 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~g~ 286 (577)
|..+|..-..-+...|++..|++++.++.+ .|-.++...|..++..+...|-
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 455555555555666677777766666654 2334555555555554444443
No 445
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=27.05 E-value=4.3e+02 Score=23.08 Aligned_cols=25 Identities=8% Similarity=0.145 Sum_probs=16.3
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHc
Q 008097 346 LKILGFCVDGNVEDAKRCFDQMIEE 370 (577)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~~~~ 370 (577)
+++..|-+.-++.++.++++.|.+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777777777653
No 446
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=26.84 E-value=3.9e+02 Score=25.23 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=43.6
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHH
Q 008097 256 LDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLY 319 (577)
Q Consensus 256 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 319 (577)
.++++.+.+.++.|.-+++.-+.-.+.+.=.+.+.+.+++.+.. |..-+..++..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-------D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-------DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-------ChhhhHHHHHHHH
Confidence 46778888888888888888777778888888889999888875 3333666666665
No 447
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.77 E-value=5e+02 Score=23.75 Aligned_cols=96 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHhh--------cCCCceeh-------HHHHHHhhhc----CCHHHHHHHHHHHHHcCCCCCHhh
Q 008097 318 LYRENQQDEALEYLKQMEK--------LFPRAVDR-------SLKILGFCVD----GNVEDAKRCFDQMIEEGGVPNVVI 378 (577)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~--------~~p~~~~~-------~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~ 378 (577)
+.+.|++.+|...+.++.. ..|....| +.++.-||+| |++-++++.-.++... .+.|+..
T Consensus 188 lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~-~~~nvKA 266 (329)
T KOG0545|consen 188 LFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH-HPGNVKA 266 (329)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc-CCchHHH
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNT 416 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 416 (577)
|-.-..+.+..-+.++|..-|....+ ..|......+
T Consensus 267 ~frRakAhaa~Wn~~eA~~D~~~vL~--ldpslasvVs 302 (329)
T KOG0545|consen 267 YFRRAKAHAAVWNEAEAKADLQKVLE--LDPSLASVVS 302 (329)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHh--cChhhHHHHH
No 448
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=26.72 E-value=5.7e+02 Score=24.41 Aligned_cols=47 Identities=17% Similarity=0.342 Sum_probs=23.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHH
Q 008097 387 CQEERVREASELMKEMTGHGYLPIAS---TFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
.+.|+..+|.+.|+.+.+. .|=.. ....++.+|....-+.+...++-
T Consensus 286 RklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777666542 12111 12345556655555544444443
No 449
>PRK13342 recombination factor protein RarA; Reviewed
Probab=26.27 E-value=6.7e+02 Score=25.08 Aligned_cols=119 Identities=18% Similarity=0.066 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhC---CC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhH
Q 008097 164 VNALVLLEKSFSF---GF-VPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTY 239 (577)
Q Consensus 164 ~~A~~~~~~m~~~---g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 239 (577)
++...++++.... |+ ..+......++..+ .|+...+..+++.+......=..+....++..... ....+...+
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~-~~d~~~~~~ 230 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAA-RYDKDGDEH 230 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhh-ccCCCccHH
Confidence 4444455444321 33 34444444444432 67777777776665432000012222233322211 111222345
Q ss_pred HHHHHHHHh---cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC
Q 008097 240 NILISSYCE---TGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGG 285 (577)
Q Consensus 240 ~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 285 (577)
..+++++.+ .++++.|+..+..|.+.|..|....-..++.++-.-|
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 555666655 4789999999999999888777665555555544433
No 450
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=26.05 E-value=8.7e+02 Score=26.33 Aligned_cols=33 Identities=9% Similarity=-0.059 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 008097 451 HYSPLIKALCEKGGFQSASMLLVQMVGKGILPDY 484 (577)
Q Consensus 451 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 484 (577)
....|++++.. |+...++.+++++...|+.+..
T Consensus 248 ~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~~ 280 (709)
T PRK08691 248 YLYELLTGIIN-QDGAALLAKAQEMAACAVGFDN 280 (709)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHHH
Confidence 34445555554 7888888888888887776554
No 451
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=25.34 E-value=2.8e+02 Score=20.42 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=19.2
Q ss_pred HHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 008097 66 AFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVM 107 (577)
Q Consensus 66 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 107 (577)
++|+ .....|+..|+..|-.++....-.=.++...+++..|
T Consensus 29 EL~E-La~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYE-LAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHH-HHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4444 4444455555555555444444444444444444444
No 452
>PRK13342 recombination factor protein RarA; Reviewed
Probab=24.99 E-value=7e+02 Score=24.91 Aligned_cols=91 Identities=14% Similarity=0.040 Sum_probs=49.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh--cCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChh
Q 008097 160 EENLVNALVLLEKSFSFGFVPDVVTITKVLELLCS--VGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVD 237 (577)
Q Consensus 160 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 237 (577)
.|+..+++.+++.....+...+......++..... ...-+.-.++...+.+..+.++.+.|..++..|.+.|..|...
T Consensus 187 ~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i 266 (413)
T PRK13342 187 NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFI 266 (413)
T ss_pred CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 67777777777776543322333333333322110 0111223344444445456678888888888888888777655
Q ss_pred hHHHHHHHHHhcC
Q 008097 238 TYNILISSYCETG 250 (577)
Q Consensus 238 ~~~~li~~~~~~g 250 (577)
.-..++.++-..|
T Consensus 267 ~rrl~~~a~edig 279 (413)
T PRK13342 267 ARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHhhc
Confidence 5555555544444
No 453
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=24.95 E-value=1.9e+02 Score=22.44 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=35.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh
Q 008097 153 LICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVM 199 (577)
Q Consensus 153 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 199 (577)
++..+...+..-.|.++++.+.+.+..++..|....++.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 45555566677788889999988887778888777788887777543
No 454
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=24.76 E-value=2.8e+02 Score=26.66 Aligned_cols=63 Identities=16% Similarity=0.271 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008097 358 EDAKRCFDQMIEEGGVPN----VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLC 422 (577)
Q Consensus 358 ~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 422 (577)
++...+++.++.. -|+ +.-|-+++......|.++.++.+|++.+..|-.|=...-..+++.+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4556666666553 244 34688888888888888888888888888887776555555555443
No 455
>PF13934 ELYS: Nuclear pore complex assembly
Probab=24.10 E-value=5.3e+02 Score=23.18 Aligned_cols=116 Identities=15% Similarity=0.082 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHH
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPL 455 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~l 455 (577)
+..|...++++....+ .+-.+.++.+.+-.+.|+.... ++.++...|+.+.|..+++ ... -.++..--..+
T Consensus 76 p~~~~~~~~g~W~LD~-~~~~~A~~~L~~ps~~~~~~~~--Il~~L~~~~~~~lAL~y~~-~~~-----p~l~s~~~~~~ 146 (226)
T PF13934_consen 76 PPKYIKFIQGFWLLDH-GDFEEALELLSHPSLIPWFPDK--ILQALLRRGDPKLALRYLR-AVG-----PPLSSPEALTL 146 (226)
T ss_pred CHHHHHHHHHHHHhCh-HhHHHHHHHhCCCCCCcccHHH--HHHHHHHCCChhHHHHHHH-hcC-----CCCCCHHHHHH
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcchHHHH
Q 008097 456 IKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLS----QQTTWLLL 503 (577)
Q Consensus 456 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~~ 503 (577)
......+|.+.||..+.+...+ .-....|..++..|. +.+..+..
T Consensus 147 ~~~~La~~~v~EAf~~~R~~~~---~~~~~l~e~l~~~~~~~~~~~~~~~~L 195 (226)
T PF13934_consen 147 YFVALANGLVTEAFSFQRSYPD---ELRRRLFEQLLEHCLEECARSGRLDEL 195 (226)
T ss_pred HHHHHHcCCHHHHHHHHHhCch---hhhHHHHHHHHHHHHHHhhhhhHHHHH
No 456
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=24.02 E-value=8.2e+02 Score=25.34 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=19.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCC
Q 008097 159 KEENLVNALVLLEKSFSFGFVPD 181 (577)
Q Consensus 159 ~~~~~~~A~~~~~~m~~~g~~~~ 181 (577)
..++..+|+.+++++...|..|.
T Consensus 269 ~~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 269 IHRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHH
Confidence 45889999999999999887654
No 457
>PRK09857 putative transposase; Provisional
Probab=24.01 E-value=4.3e+02 Score=24.95 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 008097 414 FNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDY 484 (577)
Q Consensus 414 ~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 484 (577)
+..++.-....|+.++-.++++ .+. .. ..+..+...++..-+...|.-+++.++.++|...|+.++.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~-~l~--~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~ 275 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFID-GVA--ER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLAD 275 (292)
T ss_pred HHHHHHHHhhccccchHHHHHH-HHH--Hh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 4455544456677766666666 444 22 2334445566777777778878888999999988887663
No 458
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=23.97 E-value=3.5e+02 Score=21.00 Aligned_cols=76 Identities=17% Similarity=0.126 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHH
Q 008097 391 RVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASM 470 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 470 (577)
..+||..+.+.+...+- -....-.+-+..+.+.|++++|+ .. ... ...||.+.|..| +-.+.|.-+++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL--l~-~~~----~~~pdL~p~~AL--~a~klGL~~~~e~ 90 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL--LL-PQC----HCYPDLEPWAAL--CAWKLGLASALES 90 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH--HH-HTT----S--GGGHHHHHH--HHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH--Hh-ccc----CCCccHHHHHHH--HHHhhccHHHHHH
Confidence 35666666666665432 12222223334556667777772 21 111 234566655544 3456666666666
Q ss_pred HHHHHH
Q 008097 471 LLVQMV 476 (577)
Q Consensus 471 ~~~~m~ 476 (577)
.+.++.
T Consensus 91 ~l~rla 96 (116)
T PF09477_consen 91 RLTRLA 96 (116)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 666664
No 459
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=23.78 E-value=2.6e+02 Score=25.54 Aligned_cols=59 Identities=15% Similarity=0.069 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcccCCC----CCCCcccHHHHHHHHHHcCChhHHHHHHHHH
Q 008097 415 NTVLSGLCRQGNVGTALKLVEEDMRGIGRG----SLPGSGHYSPLIKALCEKGGFQSASMLLVQM 475 (577)
Q Consensus 415 ~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 475 (577)
..+..-|.+.|++++|.++|+ .+. ..+. ..+...+...+..++.+.|+.++...+.=++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~-~~~-~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLE-PAA-SSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHH-HHH-HHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566777777777777777 332 0111 1113334444555555566665555544433
No 460
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.62 E-value=7.5e+02 Score=26.22 Aligned_cols=93 Identities=10% Similarity=0.156 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCC----H--hhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHH
Q 008097 48 IFNSILDVLVKEDIDLARAFYRKKMMASGVQGD----D--YTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNT 121 (577)
Q Consensus 48 ~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~----~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 121 (577)
.||+.-..+--.++..+.+.|...|+- +..| . ..+..+--+|....++|.|.+++++..+... .++.+---
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~--i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~-~~~l~q~~ 433 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKD--IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR-QSPLCQLL 433 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHh--ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc-ccHHHHHH
Confidence 344444433333677777777644432 1112 1 1233344445566777777777777776532 13444444
Q ss_pred HHHHHHhcCCHhHHHHHHHhcc
Q 008097 122 LIHSLCKNGKVGRARSLMSDME 143 (577)
Q Consensus 122 li~~~~~~g~~~~A~~~~~~~~ 143 (577)
+.......|..++|+.+.....
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHH
Confidence 5555666677777776665544
No 461
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=23.50 E-value=3.8e+02 Score=21.34 Aligned_cols=43 Identities=19% Similarity=0.165 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHH
Q 008097 165 NALVLLEKSFSFGFVPD-VVTITKVLELLCSVGRVMDAVEILEE 207 (577)
Q Consensus 165 ~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 207 (577)
.+.++|..|...|+--. +.-|..-...+...|++.+|.+++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777776665433 44555666666677777777776643
No 462
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=23.32 E-value=1.8e+02 Score=20.80 Aligned_cols=29 Identities=10% Similarity=0.138 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHhhhcCChhHHHHHHHHH
Q 008097 199 MDAVEILEESGEQGRLGKVKGGCRFLKEM 227 (577)
Q Consensus 199 ~~a~~~~~~~~~~~~~g~~~~a~~~~~~~ 227 (577)
++|..++.++...-..|++++|..+|...
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~a 32 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEA 32 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 463
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=22.86 E-value=6.4e+02 Score=23.70 Aligned_cols=124 Identities=19% Similarity=0.146 Sum_probs=0.0
Q ss_pred HhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh
Q 008097 132 VGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ 211 (577)
Q Consensus 132 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 211 (577)
....++-++.+.+.-..+--.++..+.+..+..+..+.++.+. ....-...+..+...|++..|.+++....+.
T Consensus 83 ~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~ 156 (291)
T PF10475_consen 83 CKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQL 156 (291)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q ss_pred -----------hhcCChhHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 008097 212 -----------GRLGKVKGGCRFLKEMERKG-----CLPNVDTYNILISSYCETGVLDSALDVFND 261 (577)
Q Consensus 212 -----------~~~g~~~~a~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 261 (577)
.-..++++-......+.+.. ..-|+..|..++.+|...|+.+.+.+-+..
T Consensus 157 l~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 157 LEELKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHhcccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 464
>PRK10941 hypothetical protein; Provisional
Probab=22.58 E-value=6.3e+02 Score=23.49 Aligned_cols=57 Identities=11% Similarity=-0.055 Sum_probs=33.2
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 347 KILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+-.+|.+.++++.|.++.+.+... .+.|+.-+.--.-.|.+.|.+..|..=++..++
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l-~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQF-DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 344556666666666666666653 122344455455556677777777766666654
No 465
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.44 E-value=9e+02 Score=25.26 Aligned_cols=144 Identities=17% Similarity=0.139 Sum_probs=81.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCC-------------ChhhHHHH---HHHHH
Q 008097 184 TITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLP-------------NVDTYNIL---ISSYC 247 (577)
Q Consensus 184 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p-------------~~~~~~~l---i~~~~ 247 (577)
+...+...+...|+.+.|..+.+. ++-.|+......+.| |-..|-++ |....
T Consensus 286 sLLqva~~~r~qgD~e~aadLieR------------~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~ 353 (665)
T KOG2422|consen 286 SLLQVADIFRFQGDREMAADLIER------------GLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLA 353 (665)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHH------------HHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHH
Confidence 444455667778888877776544 333455554433332 11122222 34456
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHH-cCCChHHHHHHHHHHHhccC-CCCCCcccHHHHHHHHHhcCC--
Q 008097 248 ETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLC-SGGRIDDGLKILQLMEDSKE-GSKGRISPYNSVLYGLYRENQ-- 323 (577)
Q Consensus 248 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~-- 323 (577)
+.|.+..|.++-+-+......-|+.....+|+.|+ +..+++--+++++.....+. ...|+..--.++...|.....
T Consensus 354 ~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~ 433 (665)
T KOG2422|consen 354 QRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEED 433 (665)
T ss_pred hcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChh
Confidence 67888888888887776654446777777777775 44566666666666643321 223333333344455555444
Q ss_pred -HHHHHHHHHHHhhcCC
Q 008097 324 -QDEALEYLKQMEKLFP 339 (577)
Q Consensus 324 -~~~A~~~~~~~~~~~p 339 (577)
-..|+..+.++.+..|
T Consensus 434 ~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 434 DRQSALNALLQALKHHP 450 (665)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 4556667776666555
No 466
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.40 E-value=1e+03 Score=25.82 Aligned_cols=155 Identities=10% Similarity=0.029 Sum_probs=83.7
Q ss_pred HHHHHHHhccCChhHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHh-hcCCCCC-HhhHHHHHHHH
Q 008097 15 ITVIRGLGRARMINDVVKATDLVS-RFNMTPSLKIFNSILDVLVKEDIDLARAFYRKKMM-ASGVQGD-DYTYAILMKGL 91 (577)
Q Consensus 15 ~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~~m~-~~~~~~~-~~~~~~ll~~~ 91 (577)
-.+-..|.-.|.+++|++.--... ...+.++...+..++.-|...-.+++.+.+. .-. ..++.+. ......++..|
T Consensus 63 L~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~-~~~~~~~iD~rL~~iv~rmi~kc 141 (929)
T KOG2062|consen 63 LLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYK-NPEQKSPIDQRLRDIVERMIQKC 141 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhc-CccccCCCCHHHHHHHHHHHHHh
Confidence 344566778889988887654442 4456667777777776665544555555554 111 1222222 23356666677
Q ss_pred HhcCCHhHHHHH---------HHH-HHhCCCCCCcchHHHHHHHHHhcCC-----H---hHHHHHHHhccCCCceeHHHH
Q 008097 92 CLTNRVGDGFKL---------LHV-MKSRGVKPNSVIYNTLIHSLCKNGK-----V---GRARSLMSDMEEPNDVTFSIL 153 (577)
Q Consensus 92 ~~~~~~~~a~~~---------~~~-~~~~g~~~~~~~~~~li~~~~~~g~-----~---~~A~~~~~~~~~~~~~~~~~l 153 (577)
...+++..++-+ +++ +.+.. .+....+.+++......+ . ....+.|..++.||. ..+
T Consensus 142 l~d~e~~~aiGia~E~~rld~ie~Ail~~d--~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy---~~v 216 (929)
T KOG2062|consen 142 LDDNEYKQAIGIAFETRRLDIIEEAILKSD--SVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDY---FSV 216 (929)
T ss_pred hhhhHHHHHHhHHhhhhhHHHHHHHhcccc--ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCe---eee
Confidence 666666655433 222 11111 122234444444433322 2 223333444445553 345
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 008097 154 ICAYCKEENLVNALVLLEKSFS 175 (577)
Q Consensus 154 i~~~~~~~~~~~A~~~~~~m~~ 175 (577)
..+|.-..+.+.|.++++++.+
T Consensus 217 c~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 217 CQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred eeeeEEcCCHHHHHHHHHHHHh
Confidence 6777778888888888888876
No 467
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=22.40 E-value=3.6e+02 Score=27.85 Aligned_cols=33 Identities=6% Similarity=-0.114 Sum_probs=23.7
Q ss_pred CCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 008097 5 IQSPPDESIFITVIRGLGRARMINDVVKATDLV 37 (577)
Q Consensus 5 ~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 37 (577)
..++|...+-..+-..|.-.|++++|++.--..
T Consensus 53 ~sf~~remaaL~~SKvYy~LgeY~~Ai~yAL~a 85 (926)
T COG5116 53 DSFDPREMAALCLSKVYYVLGEYQQAIEYALRA 85 (926)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 345666666677778889999999988754433
No 468
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=22.16 E-value=1.8e+02 Score=22.81 Aligned_cols=47 Identities=17% Similarity=0.175 Sum_probs=33.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 008097 152 ILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRV 198 (577)
Q Consensus 152 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 198 (577)
.++......+..-.|.++++.+...+...+..|.-..++.+.+.|-+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 45666666677888889999998888888877777777777776643
No 469
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=22.14 E-value=4.1e+02 Score=21.15 Aligned_cols=72 Identities=10% Similarity=0.028 Sum_probs=36.3
Q ss_pred ChhHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHH
Q 008097 26 MINDVVKATDLVSRFN-MTPSLKIFNSILDVLVKE---DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGF 101 (577)
Q Consensus 26 ~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~---~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 101 (577)
++..|+.-+++..... ..++. .+..+..+. -++.+.++++..+...|+. +..+-..+++...+.|-++...
T Consensus 5 ~~~kAl~~L~ea~~~~~~~~~~----~~~dg~IqrFE~t~ElaWK~lK~~L~~~G~~-~~~spr~~~r~A~~~glI~d~e 79 (124)
T PF08780_consen 5 NFKKALSRLEEALEKYEDPLSE----LERDGVIQRFEFTFELAWKTLKDYLEYEGIS-ECNSPRDVFREAFKAGLIDDGE 79 (124)
T ss_dssp HHHHHHHHHHHHHHHH-SCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-CCTSHHHHHHHHHHTTSSSHHH
T ss_pred HHHHHHHHHHHHHHhccCcchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccCCHHHHHHHHHHcCCCCCHH
Confidence 3455666666665421 11222 333444443 5667777777555566764 3333355555555555554443
Q ss_pred H
Q 008097 102 K 102 (577)
Q Consensus 102 ~ 102 (577)
.
T Consensus 80 ~ 80 (124)
T PF08780_consen 80 I 80 (124)
T ss_dssp H
T ss_pred H
Confidence 3
No 470
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=22.12 E-value=1.1e+03 Score=26.34 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=17.7
Q ss_pred HHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcC
Q 008097 421 LCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKG 463 (577)
Q Consensus 421 ~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g 463 (577)
....|++..|.+++.+.++ +.+-.++..+|..++..+...|
T Consensus 1241 a~~~~~yGr~lK~l~klie--e~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1241 AKALGQYGRALKALLKLIE--ENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred HHHHHHHHHHHHHHHHHHH--hccccchhHHHHHHHHHHHHhC
Confidence 3334444444444443333 3334444444444444444444
No 471
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=21.99 E-value=1.9e+02 Score=21.95 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=30.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHH
Q 008097 156 AYCKEENLVNALVLLEKSFSFGF-VPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEM 227 (577)
Q Consensus 156 ~~~~~~~~~~A~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~ 227 (577)
.|...++.+..+++++.+.+.-- .|....=...+..|.+ ++.+|.+.++.........+++.|+.+|..+
T Consensus 23 ~y~~~~n~~~m~~~L~pLh~~l~k~PeT~~E~~F~~~fg~--~L~~A~~~~~~y~~t~~~~~l~~aW~~y~~v 93 (100)
T PF08771_consen 23 LYFGENNVEKMFKILEPLHEMLEKGPETLREVSFAQAFGR--DLQEAREWLKRYERTGDETDLNQAWDIYYQV 93 (100)
T ss_dssp HHHTTT-HHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHH--HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHhhhCCHhhHHHHHHHHHHH
Confidence 44556666666665544322111 2443333344444432 3455555555444443444445555544443
No 472
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.91 E-value=1.4e+02 Score=28.40 Aligned_cols=24 Identities=17% Similarity=-0.022 Sum_probs=11.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH
Q 008097 353 VDGNVEDAKRCFDQMIEEGGVPNV 376 (577)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~~~p~~ 376 (577)
..|++++|...|....+.++.+..
T Consensus 194 llg~~e~aa~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLDYDEAN 217 (377)
T ss_pred HhhchHHHHHHHHHHHhccccHHH
Confidence 345555555555555554444433
No 473
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=21.83 E-value=7.3e+02 Score=23.93 Aligned_cols=111 Identities=10% Similarity=0.074 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhcCCCCCHhhHHHHHHHHH------hcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHH
Q 008097 62 DLARAFYRKKMMASGVQGDDYTYAILMKGLC------LTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRA 135 (577)
Q Consensus 62 ~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 135 (577)
.++..++++.|. ++ .|-++.....|.++- ..-+|.....+|+-+......| +++.|.-+. .++..-.+.+
T Consensus 273 ~eg~all~rA~~-~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP-vV~LNRAVA-la~~~Gp~ag 348 (415)
T COG4941 273 DEGLALLDRALA-SR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP-VVTLNRAVA-LAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHH-cC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC-eEeehHHHH-HHHhhhHHhH
Confidence 455556653332 22 255565555555443 1235556666666666544222 233333332 2333334555
Q ss_pred HHHHHhccCC----Cce-eHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 008097 136 RSLMSDMEEP----NDV-TFSILICAYCKEENLVNALVLLEKSFSF 176 (577)
Q Consensus 136 ~~~~~~~~~~----~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~ 176 (577)
+.+.+-+... +-. .+..-...+.+.|+.++|...|++....
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 5555555431 112 2233345566677777777777776543
No 474
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=21.66 E-value=8.5e+02 Score=24.66 Aligned_cols=47 Identities=11% Similarity=0.226 Sum_probs=34.6
Q ss_pred CCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC
Q 008097 95 NRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE 144 (577)
Q Consensus 95 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 144 (577)
..+++-.++++.+.+.| .......-|+.|.|.+++++|...+++-.+
T Consensus 68 ~~~~e~i~lL~~l~~~g---~ad~lp~TIDSyTR~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG---GADFLPSTIDAYTRQNRYDEAAVGIKESIK 114 (480)
T ss_pred CcHHHHHHHHHHHHHcc---CCCccceeeecccccccHHHHHHHHHhhhh
Confidence 35677778888887765 223455668889999999999988887654
No 475
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=21.39 E-value=8.2e+02 Score=24.39 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=34.0
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhcc
Q 008097 102 KLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDME 143 (577)
Q Consensus 102 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 143 (577)
++|..+.+..+.||.+.+..+..+|++.=-++-|.++++-..
T Consensus 460 ~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~ 501 (586)
T KOG2223|consen 460 KLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYC 501 (586)
T ss_pred HHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheee
Confidence 466677788889999999999999998888888888876543
No 476
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=21.14 E-value=4.1e+02 Score=20.75 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=18.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008097 381 CLIHAYCQEERVREASELMKEMTGHG 406 (577)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m~~~g 406 (577)
++|+-+.+....++|+++++-|.+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 34566666777778888888877776
No 477
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.13 E-value=3.3e+02 Score=19.69 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=18.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008097 381 CLIHAYCQEERVREASELMKEMTGHG 406 (577)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m~~~g 406 (577)
++++-+.+..--++|+++++-|.+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 45566667777778888888777766
No 478
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=20.98 E-value=4.7e+02 Score=21.39 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=38.6
Q ss_pred CcCHHHHHHHHHHHHcCC---ChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 008097 268 SWNFVTYDTLIRGLCSGG---RIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 268 ~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
.++..+-..+.-++.++. +..+.+.+++.+.+.. ..........-|.-++.+.+++++++.+.+...+..|+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 344444444555555544 3556667777776521 11112222334445666777777777777776665443
No 479
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=20.97 E-value=9e+02 Score=24.70 Aligned_cols=56 Identities=11% Similarity=0.147 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHH
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLC---RQGNVGTALKLV 434 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~---~~g~~~~a~~~~ 434 (577)
.+||+= -.|...|++-.|.+.|.+.... +..++..|..+..+|. +.|..++.....
T Consensus 337 ilYNcG-~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima~~~~l~ee~~~s~ 395 (696)
T KOG2471|consen 337 ILYNCG-LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMALQKGLLEEGNSSL 395 (696)
T ss_pred hHHhhh-HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHhhhhhhhhccCCc
Confidence 345543 3466788889999988888753 5567888888888884 344455544433
No 480
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=20.94 E-value=1.1e+03 Score=25.89 Aligned_cols=46 Identities=11% Similarity=0.110 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 357 VEDAKRCFDQMIEE-GGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 357 ~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
.++..+.++++.+. |+.-+......++. ...|+...|+.++++...
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia 226 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHH
Confidence 34455555555443 44444444443333 236777777777776553
No 481
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=20.88 E-value=2.1e+02 Score=28.41 Aligned_cols=63 Identities=24% Similarity=0.310 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCC-----CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008097 273 TYDTLIRGLCSGGRIDDGLKILQLMEDSKEG-----SKGRISPYNSVLYGLYRENQQDEALEYLKQME 335 (577)
Q Consensus 273 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 335 (577)
+...|++.++-.|++..|.++++.+.-...+ ..-.+.++--+.-+|.-.+++.+|.+.|..+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666677777777766655322111 11234456666677777777777777776653
No 482
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=20.52 E-value=2.9e+02 Score=21.40 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=28.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChH
Q 008097 242 LISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRID 288 (577)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 288 (577)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444444555667777777776665666666666666666665543
No 483
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=20.48 E-value=3.1e+02 Score=19.40 Aligned_cols=48 Identities=8% Similarity=0.102 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008097 357 VEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNT 416 (577)
Q Consensus 357 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 416 (577)
.+.|..++..+... -+.++..||++...+.+++- .-..+.||..+...
T Consensus 13 tEmA~~mL~DLr~d-ekRsPQLYnAI~k~L~RHkF-----------~iskl~pd~~~LG~ 60 (82)
T PF11123_consen 13 TEMAQQMLADLRDD-EKRSPQLYNAIGKLLDRHKF-----------QISKLQPDENILGE 60 (82)
T ss_pred HHHHHHHHHHhcch-hhcChHHHHHHHHHHHHccc-----------hhhhcCccHHHHHH
Confidence 45566666666543 34677889988888777652 11235677766533
No 484
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=20.42 E-value=1.3e+03 Score=26.22 Aligned_cols=303 Identities=11% Similarity=0.027 Sum_probs=160.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHhccC--CC-ceeHHHHHH-------HHHhcC---ChHHHHHHHHHHHhCCCCCCHhhHHH
Q 008097 121 TLIHSLCKNGKVGRARSLMSDMEE--PN-DVTFSILIC-------AYCKEE---NLVNALVLLEKSFSFGFVPDVVTITK 187 (577)
Q Consensus 121 ~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~-------~~~~~~---~~~~A~~~~~~m~~~g~~~~~~~~~~ 187 (577)
++=+++.....+++|...++++.. |+ ...|.++.+ --...| .+++|+.-|+.+...--. +--|..
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 557 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGA--PLEYLG 557 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCC--chHHHh
Confidence 344667777788899988888875 32 334443322 122233 467888888877543222 233444
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHh----------------------------------------hhcCChhHHHHHHHHH
Q 008097 188 VLELLCSVGRVMDAVEILEESGEQ----------------------------------------GRLGKVKGGCRFLKEM 227 (577)
Q Consensus 188 ll~~~~~~g~~~~a~~~~~~~~~~----------------------------------------~~~g~~~~a~~~~~~~ 227 (577)
=.-.|.+.|++++-.+.+..+.++ -+.-...+-.++|+.+
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEIL 637 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 445677788888777777776666 1111122233444444
Q ss_pred HHcC-------CCCChhh-----HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHH
Q 008097 228 ERKG-------CLPNVDT-----YNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQ 295 (577)
Q Consensus 228 ~~~~-------~~p~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 295 (577)
..+- +.+.+.+ +..+++- -.|..---..+|+..... +|-.+...+.-..+..|.++-+.+...
T Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (932)
T PRK13184 638 YHKQQATLFCQLDKTPLQFRSSKMELFLSF--WSGFTPFLPELFQRAWDL---RDYRALADIFYVACDLGNWEFFSQFSD 712 (932)
T ss_pred HhhccCCceeeccCchhhhhhhhHHHHHHH--HhcCchhhHHHHHHHhhc---ccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4321 1122211 1222221 245555566777776653 455666666666778888887777666
Q ss_pred HHHhccC--CCCCCc--------ccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceeh--HHHHHHhhhcCCHHHHHHH
Q 008097 296 LMEDSKE--GSKGRI--------SPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDR--SLKILGFCVDGNVEDAKRC 363 (577)
Q Consensus 296 ~~~~~~~--~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~ 363 (577)
.+...-. ..+.+. ..|-.-+.+......++++.+.+... .|....| ..++.-..-.++.+.-..+
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (932)
T PRK13184 713 ILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT---DPTLILYAFDLFAIQALLDEEGESIIQL 789 (932)
T ss_pred HHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC---CHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 6553211 111111 22444455556556666666544433 3322222 2222222333444444444
Q ss_pred HHHHHHcCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHH
Q 008097 364 FDQMIEEGGVPN---VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGL--CRQGNVGTALKLVE 435 (577)
Q Consensus 364 ~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~ 435 (577)
.+.+... ..|. .......|.+|.-..++++|-+++......-. .+.....-++.+| .-.++-+-|...|.
T Consensus 790 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (932)
T PRK13184 790 LQLIYDY-VSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLL-LDEYSEAFVLYGCYLALTEDREAAKAHFS 864 (932)
T ss_pred HHHHHhc-cCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhh-ccccchHHHHHHHHHHhcCchhHHHHHHh
Confidence 4444432 1122 22345677888889999999999976553222 2333444455565 45677777777777
No 485
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=20.12 E-value=2.9e+02 Score=19.94 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=9.5
Q ss_pred cCChhHHHHHHHHHHH
Q 008097 249 TGVLDSALDVFNDMKI 264 (577)
Q Consensus 249 ~g~~~~A~~~~~~m~~ 264 (577)
...++.|.++-+.|..
T Consensus 52 ~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 52 GSQWERARRLQQKMKT 67 (79)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 3446666666666653
Done!