Query 008097
Match_columns 577
No_of_seqs 765 out of 3638
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 18:04:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.6E-39 3E-43 336.0 40.3 444 21-502 63-568 (597)
2 2xpi_A Anaphase-promoting comp 100.0 9.6E-39 3.3E-43 335.6 40.2 461 60-540 68-583 (597)
3 4g26_A Pentatricopeptide repea 100.0 4E-31 1.4E-35 266.2 19.2 143 354-499 83-225 (501)
4 4g26_A Pentatricopeptide repea 100.0 2.8E-29 9.5E-34 252.8 22.4 203 220-424 9-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 7.8E-26 2.7E-30 223.8 42.6 373 88-495 6-384 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 4.2E-25 1.4E-29 218.6 42.9 379 17-463 5-387 (388)
7 2gw1_A Mitochondrial precursor 99.9 3.5E-22 1.2E-26 205.3 39.8 449 11-489 6-488 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 6.4E-22 2.2E-26 199.8 35.8 310 80-404 25-357 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 2.2E-21 7.7E-26 195.8 35.0 338 102-474 13-405 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.8E-20 6.1E-25 193.8 38.9 434 11-478 25-491 (537)
11 2gw1_A Mitochondrial precursor 99.9 1.3E-20 4.3E-25 193.7 32.1 256 236-503 186-468 (514)
12 3fp2_A TPR repeat-containing p 99.9 7.6E-19 2.6E-23 181.5 41.0 398 8-439 56-490 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 1.3E-17 4.3E-22 162.5 35.8 312 149-494 5-350 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 1.5E-17 5.1E-22 162.0 35.1 324 81-459 3-350 (359)
15 3hym_B Cell division cycle pro 99.8 3.6E-17 1.2E-21 157.4 31.9 290 179-500 19-321 (330)
16 3hym_B Cell division cycle pro 99.8 7.2E-17 2.5E-21 155.2 31.4 290 114-459 20-314 (330)
17 2ooe_A Cleavage stimulation fa 99.8 1E-15 3.5E-20 157.5 40.4 167 326-501 304-480 (530)
18 1fch_A Peroxisomal targeting s 99.8 1.4E-17 4.7E-22 163.1 25.1 298 127-475 36-356 (368)
19 2xm6_A Protein corresponding t 99.8 5.8E-15 2E-19 150.3 43.0 395 29-476 25-469 (490)
20 1xi4_A Clathrin heavy chain; a 99.8 1.2E-14 3.9E-19 155.4 45.9 383 8-470 982-1376(1630)
21 2xm6_A Protein corresponding t 99.8 1.6E-14 5.4E-19 147.1 45.1 352 80-480 38-434 (490)
22 1b89_A Protein (clathrin heavy 99.8 5.6E-18 1.9E-22 162.5 18.2 399 23-503 15-423 (449)
23 2ooe_A Cleavage stimulation fa 99.8 8.7E-15 3E-19 150.6 43.6 403 8-435 10-487 (530)
24 4eqf_A PEX5-related protein; a 99.8 5E-17 1.7E-21 159.0 24.3 257 235-503 64-346 (365)
25 1fch_A Peroxisomal targeting s 99.8 9.2E-17 3.1E-21 157.2 25.3 301 90-435 34-354 (368)
26 4eqf_A PEX5-related protein; a 99.8 1.3E-16 4.3E-21 156.1 23.7 270 181-474 64-352 (365)
27 4g1t_A Interferon-induced prot 99.7 1.1E-14 3.6E-19 147.7 34.8 366 81-488 51-470 (472)
28 3spa_A Mtrpol, DNA-directed RN 99.7 5.4E-18 1.8E-22 175.3 10.2 135 341-483 127-265 (1134)
29 3spa_A Mtrpol, DNA-directed RN 99.7 2.9E-18 9.8E-23 177.3 8.1 150 307-464 126-287 (1134)
30 1xi4_A Clathrin heavy chain; a 99.7 2E-13 6.7E-18 146.1 44.8 343 84-503 988-1333(1630)
31 1b89_A Protein (clathrin heavy 99.7 1.2E-15 4E-20 146.5 24.5 375 9-474 30-413 (449)
32 3cv0_A Peroxisome targeting si 99.7 2.3E-15 7.8E-20 144.5 26.3 256 235-503 20-305 (327)
33 3cv0_A Peroxisome targeting si 99.7 2.8E-15 9.7E-20 143.8 26.0 264 181-475 20-312 (327)
34 3mkr_A Coatomer subunit epsilo 99.7 4.5E-15 1.5E-19 139.4 26.0 247 157-439 9-263 (291)
35 3mkr_A Coatomer subunit epsilo 99.7 4E-15 1.4E-19 139.7 24.6 256 91-412 9-269 (291)
36 4g1t_A Interferon-induced prot 99.7 1.2E-13 4E-18 140.0 34.0 373 44-451 49-468 (472)
37 3uq3_A Heat shock protein STI1 99.7 1.2E-14 4E-19 134.3 22.8 226 236-477 5-235 (258)
38 2pl2_A Hypothetical conserved 99.6 3.6E-14 1.2E-18 127.2 18.1 194 234-435 3-209 (217)
39 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.2E-13 3.9E-18 128.9 21.2 243 215-472 19-269 (275)
40 2pl2_A Hypothetical conserved 99.6 1.3E-13 4.3E-18 123.6 19.7 198 268-476 2-212 (217)
41 3uq3_A Heat shock protein STI1 99.6 4.4E-13 1.5E-17 123.6 21.4 225 148-404 6-235 (258)
42 3e4b_A ALGK; tetratricopeptide 99.6 2.6E-12 9E-17 128.7 28.6 349 87-479 9-388 (452)
43 3u4t_A TPR repeat-containing p 99.5 1E-12 3.5E-17 122.3 23.0 246 236-491 3-262 (272)
44 3u4t_A TPR repeat-containing p 99.5 2.3E-12 7.7E-17 120.0 24.3 244 184-456 5-262 (272)
45 2ho1_A Type 4 fimbrial biogene 99.5 1.6E-12 5.5E-17 119.5 22.8 194 275-477 41-237 (252)
46 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.5E-12 5E-17 121.4 22.0 247 159-434 17-269 (275)
47 2ho1_A Type 4 fimbrial biogene 99.5 4.6E-12 1.6E-16 116.4 24.5 198 236-439 37-237 (252)
48 1ouv_A Conserved hypothetical 99.5 2E-11 6.7E-16 113.7 28.5 224 235-479 5-252 (273)
49 4e6h_A MRNA 3'-END-processing 99.5 4.7E-10 1.6E-14 116.3 40.9 449 27-496 48-586 (679)
50 2vq2_A PILW, putative fimbrial 99.5 3.2E-12 1.1E-16 115.0 21.8 196 273-477 10-210 (225)
51 2h6f_A Protein farnesyltransfe 99.5 2.1E-12 7.2E-17 125.4 21.5 245 236-495 97-364 (382)
52 3e4b_A ALGK; tetratricopeptide 99.5 6.9E-12 2.4E-16 125.6 25.9 374 15-435 7-416 (452)
53 2q7f_A YRRB protein; TPR, prot 99.5 9.1E-13 3.1E-17 120.3 17.7 199 235-477 22-221 (243)
54 2q7f_A YRRB protein; TPR, prot 99.5 1.8E-12 6.3E-17 118.2 18.8 189 307-503 22-212 (243)
55 2vq2_A PILW, putative fimbrial 99.5 1.3E-11 4.3E-16 111.1 24.0 199 235-439 7-209 (225)
56 1ouv_A Conserved hypothetical 99.4 1E-10 3.4E-15 108.9 28.3 221 148-405 7-251 (273)
57 2h6f_A Protein farnesyltransfe 99.4 2.1E-11 7.3E-16 118.3 24.1 230 148-404 98-347 (382)
58 4e6h_A MRNA 3'-END-processing 99.4 2.7E-09 9.3E-14 110.6 41.1 441 8-459 63-584 (679)
59 4a1s_A PINS, partner of inscut 99.4 2.5E-12 8.7E-17 127.6 17.3 241 237-477 87-371 (411)
60 3sf4_A G-protein-signaling mod 99.4 2.4E-12 8.2E-17 127.4 16.9 271 149-435 11-331 (406)
61 4abn_A Tetratricopeptide repea 99.4 4.4E-12 1.5E-16 127.9 18.3 212 252-475 84-318 (474)
62 4a1s_A PINS, partner of inscut 99.4 6.6E-12 2.2E-16 124.6 17.6 272 153-439 54-371 (411)
63 2ond_A Cleavage stimulation fa 99.4 1.2E-10 4.2E-15 110.3 25.6 216 253-477 33-269 (308)
64 3ulq_A Response regulator aspa 99.4 2.5E-11 8.5E-16 119.2 20.6 230 242-477 109-367 (383)
65 3sf4_A G-protein-signaling mod 99.4 1.5E-11 5.2E-16 121.5 19.2 278 180-477 7-335 (406)
66 3ro2_A PINS homolog, G-protein 99.4 7.9E-12 2.7E-16 119.9 16.6 273 186-478 9-332 (338)
67 2ond_A Cleavage stimulation fa 99.4 1.8E-10 6.3E-15 109.1 25.3 215 220-439 35-269 (308)
68 3ro2_A PINS homolog, G-protein 99.4 2E-11 6.9E-16 117.1 18.8 274 150-439 8-331 (338)
69 3vtx_A MAMA; tetratricopeptide 99.4 7.9E-11 2.7E-15 102.3 20.2 165 235-404 4-169 (184)
70 3vtx_A MAMA; tetratricopeptide 99.4 6.9E-11 2.3E-15 102.7 19.3 161 310-477 7-169 (184)
71 3nf1_A KLC 1, kinesin light ch 99.3 3.8E-12 1.3E-16 120.8 10.7 238 235-477 26-306 (311)
72 3nf1_A KLC 1, kinesin light ch 99.3 9.8E-12 3.4E-16 118.0 13.0 177 148-336 28-223 (311)
73 4abn_A Tetratricopeptide repea 99.3 9.6E-11 3.3E-15 118.1 18.6 219 163-439 84-319 (474)
74 3ulq_A Response regulator aspa 99.3 4.2E-10 1.4E-14 110.4 20.8 236 122-404 109-367 (383)
75 1hz4_A MALT regulatory protein 99.2 6.2E-09 2.1E-13 101.6 28.0 270 155-439 22-321 (373)
76 3q15_A PSP28, response regulat 99.2 7.8E-10 2.7E-14 108.2 21.4 231 241-477 106-364 (378)
77 1hz4_A MALT regulatory protein 99.2 3.8E-09 1.3E-13 103.1 24.6 205 184-404 95-321 (373)
78 3as5_A MAMA; tetratricopeptide 99.2 1.2E-09 4.1E-14 94.5 17.9 160 311-477 11-172 (186)
79 4gyw_A UDP-N-acetylglucosamine 99.2 4.9E-10 1.7E-14 117.6 17.8 160 309-476 10-172 (723)
80 4i17_A Hypothetical protein; T 99.2 2.3E-09 7.7E-14 96.6 18.8 203 235-455 6-220 (228)
81 3q15_A PSP28, response regulat 99.2 3.8E-09 1.3E-13 103.3 21.9 163 123-300 108-290 (378)
82 3as5_A MAMA; tetratricopeptide 99.1 2.6E-09 8.8E-14 92.4 18.1 159 238-435 10-168 (186)
83 1qqe_A Vesicular transport pro 99.1 2.6E-09 8.7E-14 100.3 19.2 206 251-476 32-267 (292)
84 3edt_B KLC 2, kinesin light ch 99.1 9.5E-10 3.3E-14 102.4 15.9 144 181-336 42-197 (283)
85 1qqe_A Vesicular transport pro 99.1 6.4E-09 2.2E-13 97.5 20.0 191 243-435 44-264 (292)
86 4gyw_A UDP-N-acetylglucosamine 99.1 2.2E-09 7.5E-14 112.7 18.4 165 235-404 8-173 (723)
87 4i17_A Hypothetical protein; T 99.1 5.6E-09 1.9E-13 94.0 18.5 202 268-487 4-216 (228)
88 3edt_B KLC 2, kinesin light ch 99.1 8.6E-10 2.9E-14 102.7 13.4 129 344-477 130-280 (283)
89 3qky_A Outer membrane assembly 99.0 9.9E-09 3.4E-13 94.5 16.5 106 235-341 14-130 (261)
90 3qky_A Outer membrane assembly 99.0 1.2E-08 4.2E-13 93.9 16.4 102 269-370 13-126 (261)
91 3mv2_B Coatomer subunit epsilo 98.9 1.4E-07 4.7E-12 86.9 21.0 65 236-300 100-165 (310)
92 2yhc_A BAMD, UPF0169 lipoprote 98.9 7.1E-08 2.4E-12 86.5 18.7 184 236-439 4-211 (225)
93 3mv2_B Coatomer subunit epsilo 98.9 1.2E-07 4.2E-12 87.2 19.3 218 241-484 50-286 (310)
94 2fo7_A Synthetic consensus TPR 98.9 4.6E-08 1.6E-12 79.2 14.8 126 345-477 5-131 (136)
95 3urz_A Uncharacterized protein 98.9 4.7E-08 1.6E-12 86.5 15.7 136 314-457 60-198 (208)
96 3urz_A Uncharacterized protein 98.9 5.5E-08 1.9E-12 86.0 15.5 136 347-492 60-198 (208)
97 3rjv_A Putative SEL1 repeat pr 98.9 2.2E-07 7.5E-12 82.3 19.2 174 219-406 4-198 (212)
98 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.3E-07 4.4E-12 84.8 17.5 184 271-479 4-214 (225)
99 4ga2_A E3 SUMO-protein ligase 98.8 1E-08 3.5E-13 85.3 9.3 116 353-476 9-127 (150)
100 2uy1_A Cleavage stimulation fa 98.8 1.9E-06 6.5E-11 86.7 27.5 116 377-503 287-403 (493)
101 2fo7_A Synthetic consensus TPR 98.8 9.9E-08 3.4E-12 77.2 15.1 27 377-403 104-130 (136)
102 2ifu_A Gamma-SNAP; membrane fu 98.8 4.7E-07 1.6E-11 85.4 21.0 164 244-438 44-222 (307)
103 3qou_A Protein YBBN; thioredox 98.8 7.4E-08 2.5E-12 89.9 15.2 162 268-435 114-279 (287)
104 2pzi_A Probable serine/threoni 98.8 5.6E-08 1.9E-12 102.5 15.7 171 282-464 402-583 (681)
105 2uy1_A Cleavage stimulation fa 98.8 4.9E-06 1.7E-10 83.6 29.0 371 7-439 11-412 (493)
106 2pzi_A Probable serine/threoni 98.8 8.3E-08 2.8E-12 101.2 16.6 181 247-435 402-600 (681)
107 4ga2_A E3 SUMO-protein ligase 98.8 3.2E-08 1.1E-12 82.3 10.5 143 314-464 3-149 (150)
108 3dra_A Protein farnesyltransfe 98.8 3.7E-06 1.2E-10 78.2 24.8 233 250-490 47-299 (306)
109 3rjv_A Putative SEL1 repeat pr 98.8 6.1E-07 2.1E-11 79.4 18.8 160 310-479 20-198 (212)
110 2r5s_A Uncharacterized protein 98.8 7.1E-08 2.4E-12 82.7 12.1 24 451-474 146-169 (176)
111 2r5s_A Uncharacterized protein 98.7 1.4E-07 4.6E-12 80.9 12.8 161 273-438 8-171 (176)
112 2ifu_A Gamma-SNAP; membrane fu 98.7 3.4E-07 1.2E-11 86.4 14.5 208 94-339 4-225 (307)
113 2vsy_A XCC0866; transferase, g 98.6 3.7E-07 1.3E-11 94.4 15.4 150 284-439 2-156 (568)
114 2qfc_A PLCR protein; TPR, HTH, 98.6 4.1E-06 1.4E-10 78.3 21.1 164 313-476 80-264 (293)
115 3u3w_A Transcriptional activat 98.6 4.5E-06 1.6E-10 78.0 21.4 162 315-476 82-264 (293)
116 3qou_A Protein YBBN; thioredox 98.6 5.4E-07 1.8E-11 84.0 14.3 164 235-403 116-282 (287)
117 2vsy_A XCC0866; transferase, g 98.6 6E-07 2.1E-11 92.8 16.1 153 249-406 2-158 (568)
118 3dra_A Protein farnesyltransfe 98.6 1.6E-05 5.4E-10 73.9 23.7 218 162-404 48-286 (306)
119 3u3w_A Transcriptional activat 98.6 2E-05 6.8E-10 73.6 23.7 167 242-437 81-263 (293)
120 4f3v_A ESX-1 secretion system 98.5 7.3E-07 2.5E-11 80.9 12.3 197 283-490 18-247 (282)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.5 3.3E-06 1.1E-10 74.6 16.5 130 347-484 12-154 (213)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.5 5.5E-06 1.9E-10 73.2 17.2 124 239-369 9-149 (213)
123 4f3v_A ESX-1 secretion system 98.5 3.9E-06 1.3E-10 76.2 15.7 184 214-404 19-236 (282)
124 4gco_A Protein STI-1; structur 98.5 2.5E-06 8.5E-11 68.2 13.0 92 379-476 16-108 (126)
125 3gyz_A Chaperone protein IPGC; 98.5 1.2E-06 4E-11 72.5 11.3 101 376-485 36-138 (151)
126 3gyz_A Chaperone protein IPGC; 98.5 1.4E-06 4.8E-11 72.0 11.7 99 238-340 38-136 (151)
127 2qfc_A PLCR protein; TPR, HTH, 98.5 8.4E-06 2.9E-10 76.2 18.2 98 238-335 77-182 (293)
128 2e2e_A Formate-dependent nitri 98.4 1.3E-06 4.3E-11 74.8 10.9 125 351-484 20-148 (177)
129 1a17_A Serine/threonine protei 98.4 5.8E-06 2E-10 69.5 14.8 122 348-476 20-144 (166)
130 2vgx_A Chaperone SYCD; alterna 98.4 6.8E-07 2.3E-11 73.9 8.3 97 375-477 20-117 (148)
131 2c2l_A CHIP, carboxy terminus 98.4 3.2E-06 1.1E-10 78.4 13.9 190 235-436 3-195 (281)
132 3q7a_A Farnesyltransferase alp 98.4 0.00011 3.7E-09 69.1 24.1 223 248-478 66-331 (349)
133 4gco_A Protein STI-1; structur 98.4 4.9E-06 1.7E-10 66.4 12.9 101 237-341 14-114 (126)
134 1na0_A Designed protein CTPR3; 98.4 8.7E-06 3E-10 64.4 14.1 93 378-476 11-104 (125)
135 2e2e_A Formate-dependent nitri 98.4 5E-06 1.7E-10 71.0 13.1 124 215-343 24-150 (177)
136 1a17_A Serine/threonine protei 98.4 9.2E-06 3.1E-10 68.2 14.4 26 378-403 83-108 (166)
137 3gw4_A Uncharacterized protein 98.4 2.5E-06 8.6E-11 74.6 11.0 101 376-476 66-174 (203)
138 2vgx_A Chaperone SYCD; alterna 98.4 1.9E-06 6.6E-11 71.1 9.6 102 235-340 20-121 (148)
139 4gcn_A Protein STI-1; structur 98.3 4.5E-06 1.5E-10 66.8 11.4 105 376-489 8-121 (127)
140 1na0_A Designed protein CTPR3; 98.3 1E-05 3.4E-10 64.0 13.6 114 342-462 10-124 (125)
141 2c2l_A CHIP, carboxy terminus 98.3 1.6E-06 5.3E-11 80.6 9.9 192 270-477 3-198 (281)
142 2vyi_A SGTA protein; chaperone 98.3 1.3E-05 4.3E-10 64.0 13.9 26 451-476 82-107 (131)
143 2lni_A Stress-induced-phosphop 98.3 7E-06 2.4E-10 65.9 12.4 114 374-495 14-129 (133)
144 1p5q_A FKBP52, FK506-binding p 98.3 7.9E-06 2.7E-10 77.9 14.5 143 309-476 148-292 (336)
145 3upv_A Heat shock protein STI1 98.3 7.9E-06 2.7E-10 65.2 12.1 96 376-477 4-100 (126)
146 2lni_A Stress-induced-phosphop 98.3 8.9E-06 3E-10 65.3 12.1 93 311-404 19-112 (133)
147 2vyi_A SGTA protein; chaperone 98.3 9.9E-06 3.4E-10 64.7 11.9 29 376-404 80-108 (131)
148 3gw4_A Uncharacterized protein 98.3 2.7E-05 9.2E-10 67.9 15.6 157 128-299 4-175 (203)
149 4gcn_A Protein STI-1; structur 98.3 8.3E-06 2.8E-10 65.2 11.2 91 348-439 15-111 (127)
150 1p5q_A FKBP52, FK506-binding p 98.2 1.7E-05 5.9E-10 75.6 14.0 157 249-430 126-283 (336)
151 3dss_A Geranylgeranyl transfer 98.2 0.00036 1.2E-08 65.2 22.4 84 252-339 90-176 (331)
152 2xcb_A PCRH, regulatory protei 98.2 9.8E-06 3.3E-10 66.3 10.5 96 376-477 18-114 (142)
153 1elw_A TPR1-domain of HOP; HOP 98.2 4.6E-05 1.6E-09 59.4 13.9 96 376-477 4-100 (118)
154 2dba_A Smooth muscle cell asso 98.2 4.6E-05 1.6E-09 62.4 14.6 109 374-491 26-140 (148)
155 2xcb_A PCRH, regulatory protei 98.2 1.7E-05 6E-10 64.8 11.5 100 237-340 19-118 (142)
156 4b4t_Q 26S proteasome regulato 98.2 5.1E-05 1.7E-09 75.2 17.1 165 311-476 58-243 (434)
157 3q7a_A Farnesyltransferase alp 98.2 0.00032 1.1E-08 65.8 21.2 31 374-404 300-330 (349)
158 2kck_A TPR repeat; tetratricop 98.1 2.8E-05 9.5E-10 60.0 11.8 104 235-340 5-109 (112)
159 2fbn_A 70 kDa peptidylprolyl i 98.1 2.3E-05 7.9E-10 68.2 12.4 94 377-476 89-184 (198)
160 3q49_B STIP1 homology and U bo 98.1 2.5E-05 8.6E-10 63.1 11.3 98 374-477 7-105 (137)
161 3upv_A Heat shock protein STI1 98.1 2.8E-05 9.7E-10 61.9 11.4 98 237-338 5-102 (126)
162 1elr_A TPR2A-domain of HOP; HO 98.1 2.2E-05 7.4E-10 62.7 10.6 97 379-477 7-107 (131)
163 1elr_A TPR2A-domain of HOP; HO 98.1 2.2E-05 7.6E-10 62.6 10.6 112 343-460 6-123 (131)
164 2kck_A TPR repeat; tetratricop 98.1 2.9E-05 9.8E-10 60.0 10.8 94 377-476 7-104 (112)
165 1hxi_A PEX5, peroxisome target 98.1 2.6E-05 8.9E-10 61.6 10.3 91 379-476 20-112 (121)
166 2dba_A Smooth muscle cell asso 98.1 7.4E-05 2.5E-09 61.1 13.5 95 309-404 29-127 (148)
167 2fbn_A 70 kDa peptidylprolyl i 98.1 5.1E-06 1.7E-10 72.5 6.4 164 244-431 12-176 (198)
168 1elw_A TPR1-domain of HOP; HOP 98.0 7.7E-05 2.6E-09 58.0 12.7 99 237-339 5-103 (118)
169 3sz7_A HSC70 cochaperone (SGT) 98.0 3.7E-05 1.3E-09 64.5 11.4 96 375-477 10-107 (164)
170 3dss_A Geranylgeranyl transfer 98.0 0.00027 9.1E-09 66.1 17.9 156 324-489 90-275 (331)
171 1hxi_A PEX5, peroxisome target 98.0 2.8E-05 9.5E-10 61.5 9.8 99 238-340 19-117 (121)
172 3sz7_A HSC70 cochaperone (SGT) 98.0 6.1E-05 2.1E-09 63.2 12.3 105 235-343 10-114 (164)
173 2xev_A YBGF; tetratricopeptide 98.0 0.00012 4E-09 58.3 13.4 91 313-404 7-104 (129)
174 3q49_B STIP1 homology and U bo 98.0 4.2E-05 1.4E-09 61.8 10.5 99 235-337 8-106 (137)
175 4b4t_Q 26S proteasome regulato 98.0 0.00038 1.3E-08 68.8 18.7 61 238-298 137-202 (434)
176 3ro3_A PINS homolog, G-protein 98.0 4.2E-05 1.4E-09 63.6 9.9 101 377-477 50-157 (164)
177 1wao_1 Serine/threonine protei 97.9 3.9E-05 1.3E-09 76.9 11.1 116 350-473 15-134 (477)
178 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 9.1E-05 3.1E-09 73.9 13.7 96 376-477 317-414 (457)
179 3ro3_A PINS homolog, G-protein 97.9 3.9E-05 1.3E-09 63.8 8.9 59 378-436 91-154 (164)
180 2xev_A YBGF; tetratricopeptide 97.9 0.00013 4.4E-09 58.1 11.6 99 241-340 7-108 (129)
181 2if4_A ATFKBP42; FKBP-like, al 97.9 5E-05 1.7E-09 72.4 10.0 143 311-477 182-327 (338)
182 3rkv_A Putative peptidylprolyl 97.9 8.6E-05 2.9E-09 62.1 10.3 101 377-484 12-130 (162)
183 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00015 5.1E-09 72.3 13.1 120 311-433 271-407 (457)
184 2hr2_A Hypothetical protein; a 97.8 0.00016 5.5E-09 59.1 10.6 97 379-477 14-130 (159)
185 1wao_1 Serine/threonine protei 97.8 0.00011 3.8E-09 73.6 11.7 116 317-435 15-134 (477)
186 3k9i_A BH0479 protein; putativ 97.8 2.6E-05 8.8E-10 61.2 4.9 83 355-439 4-89 (117)
187 3k9i_A BH0479 protein; putativ 97.7 3.9E-05 1.3E-09 60.1 5.9 86 249-337 3-90 (117)
188 1ihg_A Cyclophilin 40; ppiase 97.7 0.00023 7.9E-09 68.6 11.9 89 375-470 272-362 (370)
189 2hr2_A Hypothetical protein; a 97.7 0.00031 1.1E-08 57.4 10.4 62 378-439 59-130 (159)
190 1dce_A Protein (RAB geranylger 97.7 0.0011 3.7E-08 67.7 17.0 171 287-467 45-244 (567)
191 3rkv_A Putative peptidylprolyl 97.6 0.00043 1.5E-08 57.8 11.3 26 311-336 14-39 (162)
192 3n71_A Histone lysine methyltr 97.6 0.00032 1.1E-08 69.9 11.1 128 351-478 319-464 (490)
193 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00027 9.4E-09 67.2 9.8 145 237-404 180-327 (338)
194 1ihg_A Cyclophilin 40; ppiase 97.5 0.00088 3E-08 64.5 13.1 115 377-498 224-355 (370)
195 3n71_A Histone lysine methyltr 97.5 0.00039 1.3E-08 69.3 10.7 134 245-404 318-463 (490)
196 2l6j_A TPR repeat-containing p 97.5 0.00049 1.7E-08 52.8 8.6 94 375-474 3-103 (111)
197 1dce_A Protein (RAB geranylger 97.4 0.0048 1.6E-07 63.0 17.7 169 322-499 43-241 (567)
198 1klx_A Cysteine rich protein B 97.4 0.0036 1.2E-07 50.4 13.1 111 355-479 9-127 (138)
199 1zu2_A Mitochondrial import re 97.3 0.00045 1.5E-08 56.3 6.7 35 356-391 17-51 (158)
200 1zu2_A Mitochondrial import re 97.3 0.00033 1.1E-08 57.1 5.8 99 386-493 12-133 (158)
201 2l6j_A TPR repeat-containing p 97.3 0.00024 8.1E-09 54.7 4.6 89 344-435 7-102 (111)
202 1na3_A Designed protein CTPR2; 97.3 0.0017 5.7E-08 47.5 9.1 63 376-439 9-71 (91)
203 2kat_A Uncharacterized protein 97.3 0.00081 2.8E-08 52.1 7.6 74 360-435 4-77 (115)
204 1klx_A Cysteine rich protein B 97.2 0.0097 3.3E-07 47.8 13.9 86 347-438 31-124 (138)
205 2kat_A Uncharacterized protein 97.1 0.0024 8.4E-08 49.3 9.0 79 393-477 2-81 (115)
206 3ma5_A Tetratricopeptide repea 97.0 0.0019 6.4E-08 48.6 7.0 62 375-438 6-68 (100)
207 1na3_A Designed protein CTPR2; 96.9 0.0054 1.9E-07 44.7 9.1 64 236-300 9-72 (91)
208 3ly7_A Transcriptional activat 96.9 0.012 4.3E-07 55.1 12.7 70 410-486 276-345 (372)
209 3ma5_A Tetratricopeptide repea 96.8 0.0062 2.1E-07 45.7 8.2 62 8-70 4-66 (100)
210 3ly7_A Transcriptional activat 96.7 0.011 3.6E-07 55.6 11.1 64 374-439 275-338 (372)
211 3mkq_A Coatomer beta'-subunit; 96.7 0.072 2.5E-06 57.2 19.1 27 236-262 681-707 (814)
212 3qww_A SET and MYND domain-con 96.5 0.0084 2.9E-07 58.6 9.0 88 389-476 311-409 (433)
213 3qwp_A SET and MYND domain-con 96.3 0.016 5.5E-07 56.7 10.0 89 351-439 297-399 (429)
214 3qww_A SET and MYND domain-con 96.2 0.022 7.6E-07 55.6 10.2 94 159-264 310-410 (433)
215 3bee_A Putative YFRE protein; 96.1 0.029 1E-06 41.2 8.3 62 410-476 5-70 (93)
216 3qwp_A SET and MYND domain-con 96.1 0.019 6.6E-07 56.1 9.2 99 154-264 294-399 (429)
217 2kc7_A BFR218_protein; tetratr 96.1 0.0085 2.9E-07 44.6 5.3 57 243-300 7-64 (99)
218 3lvg_A Clathrin heavy chain 1; 96.0 8.2E-06 2.8E-10 77.7 -14.3 261 13-328 56-324 (624)
219 1wy6_A Hypothetical protein ST 95.9 0.44 1.5E-05 36.9 14.3 132 160-300 20-154 (172)
220 3bee_A Putative YFRE protein; 95.8 0.066 2.3E-06 39.2 9.1 21 278-298 50-70 (93)
221 3mkq_A Coatomer beta'-subunit; 95.8 0.3 1E-05 52.3 18.1 20 275-294 633-652 (814)
222 2kc7_A BFR218_protein; tetratr 95.8 0.033 1.1E-06 41.2 7.5 56 349-405 8-64 (99)
223 3u64_A Protein TP_0956; tetrat 95.5 0.069 2.4E-06 48.0 9.5 89 392-487 179-280 (301)
224 3mkq_B Coatomer subunit alpha; 95.5 0.73 2.5E-05 38.0 14.8 46 281-334 15-60 (177)
225 1pc2_A Mitochondria fission pr 95.5 0.096 3.3E-06 42.1 9.3 84 394-484 16-104 (152)
226 3u64_A Protein TP_0956; tetrat 95.4 0.088 3E-06 47.3 9.8 84 325-408 180-272 (301)
227 1wy6_A Hypothetical protein ST 95.0 0.9 3.1E-05 35.2 14.0 130 284-435 20-149 (172)
228 4h7y_A Dual specificity protei 95.0 0.21 7.3E-06 39.6 9.6 107 8-117 10-130 (161)
229 3mkq_B Coatomer subunit alpha; 94.9 1.4 4.7E-05 36.4 15.4 101 88-205 12-112 (177)
230 3lvg_A Clathrin heavy chain 1; 94.2 2.9E-05 1E-09 74.0 -16.5 221 47-321 55-276 (624)
231 1pc2_A Mitochondria fission pr 94.1 0.32 1.1E-05 39.1 9.0 87 355-448 12-103 (152)
232 2v5f_A Prolyl 4-hydroxylase su 93.7 0.35 1.2E-05 36.1 8.4 20 382-401 11-30 (104)
233 2v5f_A Prolyl 4-hydroxylase su 93.4 0.24 8.3E-06 37.1 7.1 67 274-340 8-78 (104)
234 4h7y_A Dual specificity protei 92.7 1.1 3.7E-05 35.6 9.6 57 353-410 72-128 (161)
235 1v54_E Cytochrome C oxidase po 92.0 0.65 2.2E-05 33.7 7.0 63 391-457 25-87 (109)
236 4b4t_P 26S proteasome regulato 91.1 9.2 0.00031 37.3 16.8 187 215-404 30-246 (445)
237 1nzn_A CGI-135 protein, fissio 90.4 2.2 7.4E-05 32.9 9.1 16 420-435 83-98 (126)
238 4gns_B Protein CSD3, chitin bi 89.4 1.7 5.9E-05 45.2 10.3 129 14-143 251-398 (754)
239 1nzn_A CGI-135 protein, fissio 89.0 1.3 4.6E-05 34.1 6.9 84 253-340 18-106 (126)
240 2y69_E Cytochrome C oxidase su 88.6 1.7 5.7E-05 33.6 7.0 62 392-457 69-130 (152)
241 2p58_C Putative type III secre 88.3 4.9 0.00017 29.1 8.7 88 94-186 20-107 (116)
242 2uwj_G Type III export protein 87.0 4.6 0.00016 29.2 8.0 88 94-186 19-106 (115)
243 3lpz_A GET4 (YOR164C homolog); 86.5 20 0.00068 33.0 20.0 25 307-331 135-159 (336)
244 4gns_B Protein CSD3, chitin bi 86.2 2.1 7E-05 44.7 8.6 49 422-475 348-397 (754)
245 2ff4_A Probable regulatory pro 85.7 2.5 8.5E-05 40.5 8.5 71 381-453 176-249 (388)
246 2ff4_A Probable regulatory pro 85.4 13 0.00043 35.5 13.3 56 277-335 177-232 (388)
247 2wpv_A GET4, UPF0363 protein Y 85.3 22 0.00075 32.5 21.2 164 187-369 38-216 (312)
248 4fhn_B Nucleoporin NUP120; pro 84.8 25 0.00086 39.1 17.1 166 152-326 817-989 (1139)
249 2wpv_A GET4, UPF0363 protein Y 84.0 25 0.00086 32.1 18.1 21 457-477 196-216 (312)
250 4b4t_P 26S proteasome regulato 83.6 34 0.0012 33.2 17.1 93 277-369 143-246 (445)
251 3lpz_A GET4 (YOR164C homolog); 82.6 30 0.001 31.9 19.5 21 457-477 195-215 (336)
252 4ady_A RPN2, 26S proteasome re 82.5 56 0.0019 35.0 36.1 260 212-487 385-664 (963)
253 3ffl_A Anaphase-promoting comp 80.5 4 0.00014 33.1 6.2 61 239-299 23-91 (167)
254 4fhn_B Nucleoporin NUP120; pro 80.5 37 0.0013 37.7 16.4 82 344-427 902-987 (1139)
255 1y8m_A FIS1; mitochondria, unk 78.9 18 0.00062 28.4 9.3 23 382-404 83-105 (144)
256 4b4t_R RPN7, 26S proteasome re 77.3 12 0.00041 36.2 10.0 61 238-298 133-195 (429)
257 1v54_E Cytochrome C oxidase po 76.2 20 0.00069 26.1 10.4 48 61-109 26-73 (109)
258 3o48_A Mitochondria fission 1 75.8 20 0.00068 27.8 8.6 71 268-340 37-110 (134)
259 1qsa_A Protein (soluble lytic 74.6 78 0.0027 32.2 31.0 115 250-369 228-347 (618)
260 1zbp_A Hypothetical protein VP 72.5 21 0.0007 31.6 9.0 113 349-478 5-129 (273)
261 3ffl_A Anaphase-promoting comp 72.4 21 0.00073 28.9 8.4 59 153-211 26-92 (167)
262 1y8m_A FIS1; mitochondria, unk 71.9 34 0.0012 26.9 10.6 71 268-340 36-109 (144)
263 1zbp_A Hypothetical protein VP 71.4 9.6 0.00033 33.7 6.7 68 420-494 6-78 (273)
264 3o48_A Mitochondria fission 1 68.6 39 0.0013 26.2 9.7 24 453-476 82-105 (134)
265 2y69_E Cytochrome C oxidase su 68.5 39 0.0013 26.2 10.3 46 63-109 71-116 (152)
266 3esl_A Checkpoint serine/threo 64.8 50 0.0017 27.7 9.4 57 354-410 92-149 (202)
267 1wdy_A 2-5A-dependent ribonucl 64.2 71 0.0024 28.0 11.7 19 17-35 8-26 (285)
268 4b4t_R RPN7, 26S proteasome re 57.3 1.4E+02 0.0047 28.7 14.0 17 387-403 219-235 (429)
269 4b4t_S RPN3, 26S proteasome re 57.2 43 0.0015 33.0 8.9 61 116-176 231-299 (523)
270 3esl_A Checkpoint serine/threo 56.5 59 0.002 27.3 8.4 55 427-484 95-150 (202)
271 4ady_A RPN2, 26S proteasome re 55.5 2.2E+02 0.0076 30.5 31.9 282 156-463 383-675 (963)
272 2uwj_G Type III export protein 55.2 58 0.002 23.7 8.4 78 391-479 21-98 (115)
273 2p58_C Putative type III secre 54.7 59 0.002 23.7 9.0 78 391-479 22-99 (116)
274 1k1a_A B-cell lymphoma 3-encod 54.5 1E+02 0.0034 26.2 10.8 22 246-267 16-37 (241)
275 3txn_A 26S proteasome regulato 53.0 1.5E+02 0.0053 28.0 21.1 238 237-485 20-290 (394)
276 1wdy_A 2-5A-dependent ribonucl 53.0 1.2E+02 0.004 26.5 14.7 20 122-141 42-61 (285)
277 3ltj_A Alpharep-4; protein eng 52.4 98 0.0033 25.5 18.0 79 115-197 89-167 (201)
278 3ltm_A Alpha-REP4; protein eng 50.2 1.1E+02 0.0038 25.4 17.7 154 44-210 31-184 (211)
279 3eu9_A Huntingtin-interacting 47.5 1.2E+02 0.004 25.6 9.9 19 123-141 46-64 (240)
280 4a1g_A Mitotic checkpoint seri 46.0 1.1E+02 0.0038 24.3 8.9 52 359-410 83-135 (152)
281 1n11_A Ankyrin; clathrin, BAND 44.9 2.1E+02 0.0071 27.1 17.2 52 88-143 84-137 (437)
282 2qx5_A Nucleoporin NIC96; mRNA 44.5 2.8E+02 0.0094 28.4 20.6 42 118-160 155-199 (661)
283 3hra_A Ankyrin repeat family p 44.4 1.1E+02 0.0037 25.0 8.9 154 20-182 11-173 (201)
284 3txn_A 26S proteasome regulato 42.6 2.2E+02 0.0077 26.8 25.8 167 149-335 21-208 (394)
285 4a1g_A Mitotic checkpoint seri 42.1 1.3E+02 0.0044 23.9 8.5 52 430-484 84-136 (152)
286 2wvi_A Mitotic checkpoint seri 41.8 1.4E+02 0.0047 24.1 8.8 53 359-411 78-131 (164)
287 2nsz_A Programmed cell death p 40.7 1.2E+02 0.0041 23.2 8.6 60 120-179 11-75 (129)
288 4b4t_S RPN3, 26S proteasome re 40.4 2.8E+02 0.0095 27.3 13.0 17 251-267 415-431 (523)
289 3jxi_A Vanilloid receptor-rela 40.3 68 0.0023 27.9 7.2 52 90-141 11-71 (260)
290 4ets_A Ferric uptake regulatio 40.1 78 0.0027 25.5 6.7 72 61-133 13-86 (162)
291 3e3v_A Regulatory protein RECX 39.0 1.6E+02 0.0054 24.1 8.8 116 356-476 48-164 (177)
292 2ion_A PDCD4, programmed cell 38.9 1.1E+02 0.0037 24.3 7.2 60 120-179 13-77 (152)
293 3eu9_A Huntingtin-interacting 38.1 1.8E+02 0.0061 24.4 9.7 18 124-141 114-131 (240)
294 1k1a_A B-cell lymphoma 3-encod 37.8 1.8E+02 0.0062 24.4 9.6 155 18-181 13-177 (241)
295 2fe3_A Peroxide operon regulat 34.8 1.2E+02 0.004 23.8 6.9 61 71-132 12-72 (145)
296 3eiq_C Programmed cell death p 33.4 3E+02 0.01 25.6 13.9 195 15-211 58-321 (358)
297 2xig_A Ferric uptake regulatio 33.0 1.3E+02 0.0045 23.7 7.0 61 71-132 17-77 (150)
298 3hra_A Ankyrin repeat family p 32.6 95 0.0032 25.4 6.5 13 247-259 13-25 (201)
299 1ug3_A EIF4GI, eukaryotic prot 31.7 1.6E+02 0.0053 27.2 8.2 73 239-318 14-87 (339)
300 4gq2_M Nucleoporin NUP120; bet 31.2 5.1E+02 0.018 27.9 13.3 106 382-496 816-948 (950)
301 3aji_A 26S proteasome non-ATPa 30.9 2.3E+02 0.008 23.6 10.3 149 18-181 10-166 (231)
302 3kea_A K1L; tropism, ANK repea 30.3 2.8E+02 0.0095 24.4 9.7 209 49-299 32-246 (285)
303 1bpo_A Protein (clathrin); cla 30.0 2.7E+02 0.0092 26.9 9.3 47 95-144 343-389 (494)
304 2fe3_A Peroxide operon regulat 30.0 1.3E+02 0.0043 23.6 6.3 47 151-197 25-71 (145)
305 3l6a_A Eukaryotic translation 29.9 3.1E+02 0.011 25.5 9.9 26 120-145 16-41 (364)
306 3kea_A K1L; tropism, ANK repea 29.9 2.9E+02 0.0098 24.3 9.8 14 282-295 169-182 (285)
307 3aji_A 26S proteasome non-ATPa 29.0 2.2E+02 0.0074 23.8 8.4 19 243-261 10-28 (231)
308 4aez_C MAD3, mitotic spindle c 28.9 1.8E+02 0.0061 24.9 7.2 53 358-410 131-184 (223)
309 2d2s_A Exocyst complex compone 28.6 2.8E+02 0.0097 23.8 9.4 23 314-336 24-46 (235)
310 1wty_A Hypothetical protein TT 28.6 1.8E+02 0.0063 21.7 7.8 77 391-476 3-79 (119)
311 1ug3_A EIF4GI, eukaryotic prot 27.8 3.3E+02 0.011 24.9 9.8 26 120-145 15-40 (339)
312 3eyy_A Putative iron uptake re 27.6 1.5E+02 0.005 23.2 6.3 61 68-130 6-66 (145)
313 3ygs_P Procaspase 9; apoptosis 26.5 89 0.0031 22.5 4.4 38 130-167 51-88 (97)
314 3b7b_A Euchromatic histone-lys 26.1 2.9E+02 0.0098 23.1 10.7 19 123-141 48-66 (237)
315 2wvi_A Mitotic checkpoint seri 25.7 2.6E+02 0.0089 22.5 8.4 53 430-485 79-132 (164)
316 2d2s_A Exocyst complex compone 25.5 2.3E+02 0.0078 24.4 7.6 20 243-262 25-44 (235)
317 1mzb_A Ferric uptake regulatio 24.5 1.8E+02 0.0061 22.3 6.2 61 71-132 8-69 (136)
318 2yru_A Steroid receptor RNA ac 24.3 2.3E+02 0.0078 21.3 7.0 43 169-211 48-90 (118)
319 3b7b_A Euchromatic histone-lys 23.4 2.9E+02 0.0098 23.1 8.2 17 125-141 17-33 (237)
320 3l6a_A Eukaryotic translation 23.2 4.4E+02 0.015 24.5 9.6 61 13-78 14-80 (364)
321 3ltm_A Alpha-REP4; protein eng 22.0 3.3E+02 0.011 22.3 17.6 17 80-96 32-48 (211)
322 4ets_A Ferric uptake regulatio 22.0 1.6E+02 0.0055 23.5 5.6 48 150-197 35-84 (162)
323 2dod_A Transcription elongatio 21.9 1.1E+02 0.0039 21.2 3.9 36 465-501 16-52 (82)
324 2xig_A Ferric uptake regulatio 21.7 1.9E+02 0.0066 22.7 6.0 46 152-197 31-76 (150)
325 3ygs_P Procaspase 9; apoptosis 21.7 1.4E+02 0.0048 21.4 4.7 42 463-508 51-92 (97)
326 1wgl_A TOLL-interacting protei 21.5 1.2E+02 0.0041 19.5 3.7 11 425-435 37-47 (59)
327 2b7e_A PRE-mRNA processing pro 20.9 73 0.0025 20.5 2.5 32 163-194 2-34 (59)
328 3jxi_A Vanilloid receptor-rela 20.0 2.1E+02 0.0073 24.5 6.7 19 124-142 98-116 (260)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.6e-39 Score=335.96 Aligned_cols=444 Identities=12% Similarity=0.000 Sum_probs=266.9
Q ss_pred HhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhH
Q 008097 21 LGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGD 99 (577)
Q Consensus 21 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 99 (577)
+.+.|.+..+...++.+ +.+++..|+.++..+.+. ++++|+.+|+ .|.. ..|+..++..++.+|.+.|++++
T Consensus 63 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~-~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 135 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGE-KVLD--ITGNPNDAFWLAQVYCCTGDYAR 135 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHH--HHCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccccCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHH-HHHh--hCCCchHHHHHHHHHHHcCcHHH
Confidence 44556666666666655 235677777777777777 7777777777 5543 34566777777777777777777
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCC-------------------CceeHHHHHHHHHhc
Q 008097 100 GFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEP-------------------NDVTFSILICAYCKE 160 (577)
Q Consensus 100 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~ 160 (577)
|.++|+.+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.
T Consensus 136 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (597)
T 2xpi_A 136 AKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL 213 (597)
T ss_dssp HHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc
Confidence 77777776542 456777777777777777777777777754332 356777777777777
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhh--------------------------------------HHHHHHHHHhcCCHhHHH
Q 008097 161 ENLVNALVLLEKSFSFGFVPDVVT--------------------------------------ITKVLELLCSVGRVMDAV 202 (577)
Q Consensus 161 ~~~~~A~~~~~~m~~~g~~~~~~~--------------------------------------~~~ll~~~~~~g~~~~a~ 202 (577)
|++++|++.|++|.+.+.. +... |+.++..|.+.|++++|.
T Consensus 214 g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 292 (597)
T 2xpi_A 214 SNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE 292 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 7777777777777664321 2222 222244556777777777
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008097 203 EILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLC 282 (577)
Q Consensus 203 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 282 (577)
++|+.+. +. +++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.+|.
T Consensus 293 ~~~~~~~-------------------~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 293 DYLSSIN-------------------GL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLH 350 (597)
T ss_dssp HHHHTST-------------------TG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHH
T ss_pred HHHHHhh-------------------cC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHH
Confidence 7754432 21 2466666666666666666666666666666543 235556666666666
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHH
Q 008097 283 SGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAK 361 (577)
Q Consensus 283 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 361 (577)
+.|++++|.++++.+... .+.+..+|+.++.+|.+.|++++|.++|+++.+..|+ ...|+.++..|.+.|++++|.
T Consensus 351 ~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDR---HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH---CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666666643 1225556666666666666666666666666665443 345666666666666666666
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccc
Q 008097 362 RCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGI 441 (577)
Q Consensus 362 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~ 441 (577)
++|+++.+.+ +++..+|+.++.+|.+.|++++|+++|+++.+.. +.+..+|..+...|.+.|++++|.++|++.+...
T Consensus 428 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 428 SAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp HHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 6666666542 2355666666666666666666666666666532 2345666666666666666666666666322200
Q ss_pred -CCCCCCC--cccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchHHH
Q 008097 442 -GRGSLPG--SGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWLL 502 (577)
Q Consensus 442 -~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 502 (577)
+.+..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ ..+..+|..+..+|...|+++.
T Consensus 506 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 506 KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH
Confidence 0134554 5566666666666666666666666666432 2245666666666666666543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.6e-39 Score=335.60 Aligned_cols=461 Identities=11% Similarity=0.013 Sum_probs=377.1
Q ss_pred CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHH
Q 008097 60 DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLM 139 (577)
Q Consensus 60 ~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 139 (577)
....+...+. .+ ..++...|+.++..|.+.|++++|..+|+++.+ ..|+..++..++.+|.+.|++++|..+|
T Consensus 68 ~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 68 SFLKERNAQN-TD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCCCCCccc-cc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 4455555555 32 246788999999999999999999999999986 4578889999999999999999999999
Q ss_pred Hhc--cCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhC---------------CCCCCHhhHHHHHHHHHhcCCHhHHH
Q 008097 140 SDM--EEPNDVTFSILICAYCKEENLVNALVLLEKSFSF---------------GFVPDVVTITKVLELLCSVGRVMDAV 202 (577)
Q Consensus 140 ~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---------------g~~~~~~~~~~ll~~~~~~g~~~~a~ 202 (577)
+++ ..++..+|+.++.+|.+.|++++|+++|+++... +..++..+|+.++.+|.+.|++++|.
T Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 220 (597)
T 2xpi_A 141 TKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220 (597)
T ss_dssp HHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence 999 4588999999999999999999999999953221 22346889999999999999999999
Q ss_pred HHHHHHHHhhhcCChhH------------------HHHH-HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 008097 203 EILEESGEQGRLGKVKG------------------GCRF-LKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMK 263 (577)
Q Consensus 203 ~~~~~~~~~~~~g~~~~------------------a~~~-~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 263 (577)
++|+.+.+.. ...... +..+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.
T Consensus 221 ~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 299 (597)
T 2xpi_A 221 ECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN 299 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTST
T ss_pred HHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhh
Confidence 9999998761 111111 0111 4444444444556678888999999999999999999998
Q ss_pred HCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ce
Q 008097 264 IDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AV 342 (577)
Q Consensus 264 ~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~ 342 (577)
+. +++..++..++.+|.+.|++++|.++|+.+....+ .+..+|+.++.++.+.|++++|..+++++.+..|+ ..
T Consensus 300 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 374 (597)
T 2xpi_A 300 GL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP---YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAV 374 (597)
T ss_dssp TG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHH
T ss_pred cC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc---ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHH
Confidence 75 68999999999999999999999999999998632 37889999999999999999999999999887664 67
Q ss_pred ehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008097 343 DRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLC 422 (577)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 422 (577)
.++.++.+|.++|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 7889999999999999999999999885 23468899999999999999999999999999754 347889999999999
Q ss_pred hcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHH
Q 008097 423 RQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGK----GILPD--YLTWNSLLICLS 495 (577)
Q Consensus 423 ~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~ll~~~~ 495 (577)
+.|++++|.++|++.+. ..| +..+|+.++.+|.+.|++++|.++++++.+. +..|+ ..+|..+..+|.
T Consensus 453 ~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYA-----LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHTCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 99999999999994443 344 7889999999999999999999999999876 67888 789999999999
Q ss_pred hcchHHHHHH---------HHHHHHHHHHHhhhhhhhhHHHHHhh--HhhhcCCCC
Q 008097 496 QQTTWLLLLL---------LNEMVSFVMVVHELSAKEKRCKLRSL--NHLAHGAGS 540 (577)
Q Consensus 496 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~ 540 (577)
+.|+.+.+.. |.+...+..+++.|...|++++.... ..+...|..
T Consensus 528 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 528 KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 9999875431 22345678888899888888776554 244555554
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4e-31 Score=266.17 Aligned_cols=143 Identities=17% Similarity=0.240 Sum_probs=136.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008097 354 DGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKL 433 (577)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 433 (577)
.+.++.|.++|++|...|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcch
Q 008097 434 VEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTT 499 (577)
Q Consensus 434 ~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 499 (577)
|+ .|. ..|+.||..+|++||++|++.|++++|.+++++|.+.|..|+..||+.|+..|+..++
T Consensus 163 ~~-~M~--~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a 225 (501)
T 4g26_A 163 DA-HMV--ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVA 225 (501)
T ss_dssp HH-HHH--HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHH
T ss_pred HH-HHH--hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcc
Confidence 99 898 7899999999999999999999999999999999999999999999999999987543
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.8e-29 Score=252.78 Aligned_cols=203 Identities=14% Similarity=0.220 Sum_probs=178.9
Q ss_pred HHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC---------hHH
Q 008097 220 GCRFLKEMERKGCLPNV-DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGR---------IDD 289 (577)
Q Consensus 220 a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~---------~~~ 289 (577)
+..+.+.+.+++..+.+ ..++.+|++|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34455667666665544 46889999999999999999999999999999999999999999987765 688
Q ss_pred HHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCceehHHHHHHhhhcCCHHHHHHHHHHH
Q 008097 290 GLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK--LFPRAVDRSLKILGFCVDGNVEDAKRCFDQM 367 (577)
Q Consensus 290 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 367 (577)
|.++|++|... |..||..+|+++|.+|++.|++++|.++|++|.+ ..|+..+|+++|.+|++.|++++|.++|++|
T Consensus 89 A~~lf~~M~~~--G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 89 GFDIFKQMIVD--KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999988 9999999999999999999999999999999987 5799999999999999999999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008097 368 IEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQ 424 (577)
Q Consensus 368 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 424 (577)
.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.++..|+..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988754
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=7.8e-26 Score=223.83 Aligned_cols=373 Identities=15% Similarity=0.066 Sum_probs=279.2
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCChH
Q 008097 88 MKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEENLV 164 (577)
Q Consensus 88 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 164 (577)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++...+ .+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345566778888888877777653 22445566666777777888888877776653 34567788888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 008097 165 NALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILIS 244 (577)
Q Consensus 165 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 244 (577)
+|+..|+++.... +.+..+|..+..++.+.|++++|.+.++.+ ....+ .+...+..+..
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------------l~~~p-~~~~~~~~l~~ 143 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSA-------------------LQYNP-DLYCVRSDLGN 143 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHH-------------------HHHCT-TCTHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------HHhCC-CcHHHHHHHHH
Confidence 8888888877643 223456777788887777777777765443 22211 13456677777
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCH
Q 008097 245 SYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQ 324 (577)
Q Consensus 245 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 324 (577)
.+...|++++|...|+++.+.. +.+..+|..+...|.+.|++++|...|+++...++. +...|..+...+...|++
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN---FLDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCT
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCH
Confidence 7888888888888888887653 335677888888888888888888888888876332 556778888888888888
Q ss_pred HHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 325 DEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 325 ~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
++|...+.+..+..|+ ...+..+...|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|++.|+++.
T Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888888887775 4567778888888999999999999988852 2356788899999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 008097 404 GHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILP 482 (577)
Q Consensus 404 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 482 (577)
+.. +++..++..+...+...|++++|...+++.+. ..| +...+..+..+|.+.|++++|.+.++++.+ +.|
T Consensus 299 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p 370 (388)
T 1w3b_A 299 RLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE-----VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISP 370 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT-----SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCT
T ss_pred hhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCC
Confidence 752 44677888899999999999999999995444 345 577889999999999999999999999984 556
Q ss_pred C-HHHHHHHHHHHH
Q 008097 483 D-YLTWNSLLICLS 495 (577)
Q Consensus 483 ~-~~~~~~ll~~~~ 495 (577)
+ ...|..+-..+.
T Consensus 371 ~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 371 TFADAYSNMGNTLK 384 (388)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHhHHHHHH
Confidence 5 455555554443
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=4.2e-25 Score=218.58 Aligned_cols=379 Identities=14% Similarity=0.086 Sum_probs=217.4
Q ss_pred HHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcC
Q 008097 17 VIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTN 95 (577)
Q Consensus 17 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 95 (577)
+...+.+.|++++|++.++.+.+..| .+...+..+...+... ++++|...++ ...... +.+..+|..+..++.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~-~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFST-LAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhcC-CCchHHHHHHHHHHHHCC
Confidence 34455666677777776666655332 2334444444444444 6666666665 333221 234555666666666666
Q ss_pred CHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHh
Q 008097 96 RVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFS 175 (577)
Q Consensus 96 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 175 (577)
++++|.+.|+++.+.. +.+...|..+...|.+.|++++|.+.|+++ ..
T Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------------------------l~ 129 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSA-------------------------------LQ 129 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHH-------------------------------HH
T ss_pred CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------------------HH
Confidence 6666666666665532 112334555555555555555555555544 33
Q ss_pred CCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 008097 176 FGFVPD-VVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDS 254 (577)
Q Consensus 176 ~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 254 (577)
.. |+ ...+..+...+...|++++|.+.++.+ .... +.+..+|+.+...+...|++++
T Consensus 130 ~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------------l~~~-p~~~~~~~~l~~~~~~~g~~~~ 187 (388)
T 1w3b_A 130 YN--PDLYCVRSDLGNLLKALGRLEEAKACYLKA-------------------IETQ-PNFAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp HC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH-------------------HHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred hC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHH-------------------HHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 21 22 223333444444444444444443222 1111 1134555566666666666666
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 008097 255 ALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQM 334 (577)
Q Consensus 255 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 334 (577)
|...|+++.+.. +.+...+..+...+...|++++|...+++.....+. +..++..+...+.+.|++++|...|+++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a 263 (388)
T 1w3b_A 188 AIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN---HAVVHGNLACVYYEQGLIDLAIDTYRRA 263 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666665542 224455566666666666666666666666554221 4455666666666666666666666666
Q ss_pred hhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008097 335 EKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAST 413 (577)
Q Consensus 335 ~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 413 (577)
.+..|+ ...+..+...|.+.|++++|...|+++.+. .+.+..+|+.+...+...|++++|++.++++.+.. +.+..+
T Consensus 264 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 341 (388)
T 1w3b_A 264 IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAA 341 (388)
T ss_dssp HHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHH
T ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 665554 344566666677777777777777777665 34566777778888888888888888888877632 234567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcC
Q 008097 414 FNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKG 463 (577)
Q Consensus 414 ~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g 463 (577)
+..+...+.+.|++++|...|++.+. +.| +...|..+...+...|
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~a~~-----~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 342 HSNLASVLQQQGKLQEALMHYKEAIR-----ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHT-----TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCHHHHHhHHHHHHHcc
Confidence 77777788888888888888874444 455 4556666666655544
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.5e-22 Score=205.28 Aligned_cols=449 Identities=10% Similarity=-0.034 Sum_probs=320.7
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHH
Q 008097 11 ESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMK 89 (577)
Q Consensus 11 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~ 89 (577)
...+..+...+.+.|++++|+..|+.+.+.+ |+...|..+..++... ++++|+..|+ .+.+.. +.+..++..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMST-KALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHHC-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHH-HHhccC-hHHHHHHHHHHH
Confidence 4567888999999999999999999998854 6889999999999998 9999999999 555543 335678889999
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC----CCceeHHHHHHHHHhcCChHH
Q 008097 90 GLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE----PNDVTFSILICAYCKEENLVN 165 (577)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~ 165 (577)
++.+.|++++|...|+++.+.+. ++......++..+.+......+.+.+..+.. ++...++..............
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 99999999999999999998763 3445555555555544433333333322211 111111111111111111111
Q ss_pred HHHHHHHHHhCCCC--------C-CHhhHHHHHHHHHh---cCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCC-
Q 008097 166 ALVLLEKSFSFGFV--------P-DVVTITKVLELLCS---VGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGC- 232 (577)
Q Consensus 166 A~~~~~~m~~~g~~--------~-~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~- 232 (577)
...+...+...... | +...+......+.. .|++++|...++.+.+. ++.......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------~~~~~~~~~~ 228 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARL------------FEEQLDKNNE 228 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH------------HHHHTTTSTT
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH------------hhhhhccCcc
Confidence 11111111111111 1 13334444444443 67777777776654431 111110000
Q ss_pred -----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCC
Q 008097 233 -----LPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGR 307 (577)
Q Consensus 233 -----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 307 (577)
+.+...|..+...+...|++++|...|+++.+.. |+..++..+...|...|++++|...++.+.... +.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~ 303 (514)
T 2gw1_A 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD---SNN 303 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC---TTC
T ss_pred ccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC---cCC
Confidence 1245678888999999999999999999998874 448888999999999999999999999998763 236
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 008097 308 ISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAY 386 (577)
Q Consensus 308 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 386 (577)
...+..+...+...|++++|...++++.+..|+ ...+..+...|...|++++|...|+++.+. .+.+..+|..+...|
T Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~ 382 (514)
T 2gw1_A 304 SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEIL 382 (514)
T ss_dssp THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHH
Confidence 678999999999999999999999999987765 456778888999999999999999999886 234678899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHH
Q 008097 387 CQEERVREASELMKEMTGHGY-LPI----ASTFNTVLSGLCR---QGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIK 457 (577)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~ 457 (577)
...|++++|+..++++.+..- .|+ ...+..+...+.. .|++++|...|++.+. ..| +...+..+..
T Consensus 383 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~~~~la~ 457 (514)
T 2gw1_A 383 TDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK-----LDPRSEQAKIGLAQ 457 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-----HCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH-----hCcccHHHHHHHHH
Confidence 999999999999999885321 122 3378888999999 9999999999996555 345 6778899999
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHH
Q 008097 458 ALCEKGGFQSASMLLVQMVGKGILPDY-LTWNS 489 (577)
Q Consensus 458 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ 489 (577)
+|.+.|++++|.+.+++..+ +.|+. ..|..
T Consensus 458 ~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~ 488 (514)
T 2gw1_A 458 MKLQQEDIDEAITLFEESAD--LARTMEEKLQA 488 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCSSHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH--hccccHHHHHH
Confidence 99999999999999999985 45664 33443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=6.4e-22 Score=199.80 Aligned_cols=310 Identities=13% Similarity=0.037 Sum_probs=206.2
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHH
Q 008097 80 DDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICA 156 (577)
Q Consensus 80 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 156 (577)
+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 45556666777777777777777777776643 23566677777777777777777777777653 345567777777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCC
Q 008097 157 YCKEENLVNALVLLEKSFSFGFVPDV---VTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCL 233 (577)
Q Consensus 157 ~~~~~~~~~A~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 233 (577)
|.+.|++++|...|+++.... +.+. ..+..+...+...+.+..|... ...|++++|...|+.+.....
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-------~~~~~~~~A~~~~~~~~~~~~- 174 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNA-------FGSGDYTAAIAFLDKILEVCV- 174 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHTCHHHHHHHHHHHHHHCT-
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHHhCC-
Confidence 777888888888887777643 1223 4555555443333323333222 234555556666666665432
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHH
Q 008097 234 PNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNS 313 (577)
Q Consensus 234 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 313 (577)
.+...+..+...|.+.|++++|+..|+++.+.. +.+..++..+...|...|++++|...|+.+....+. +...+..
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~ 250 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD---HKRCFAH 250 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---hHHHHHH
Confidence 266778888888888888888888888887653 446778888888888888888888888888765222 3333443
Q ss_pred H------------HHHHHhcCCHHHHHHHHHHHhhcCCCc-----eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCH
Q 008097 314 V------------LYGLYRENQQDEALEYLKQMEKLFPRA-----VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNV 376 (577)
Q Consensus 314 l------------i~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 376 (577)
+ ...+.+.|++++|...|+++.+..|+. ..+..+...+.+.|++++|...++++.+. .+.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~ 329 (450)
T 2y4t_A 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccH
Confidence 3 666777777777777777777766653 24555666677777777777777777664 22356
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
..|..+..+|...|++++|...|+++.+
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 6777777777777777777777777776
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=2.2e-21 Score=195.78 Aligned_cols=338 Identities=13% Similarity=0.078 Sum_probs=266.7
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 008097 102 KLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEENLVNALVLLEKSFSFGF 178 (577)
Q Consensus 102 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 178 (577)
..+..+.... +.+...+..+...|.+.|++++|..+|+++.+ .+..+|..+..+|...|++++|+..|+++.+.+
T Consensus 13 ~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 90 (450)
T 2y4t_A 13 LGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK- 90 (450)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred cccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-
Confidence 3344444332 34677889999999999999999999999864 467789999999999999999999999998865
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCC-h---hhHHHH------------
Q 008097 179 VPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPN-V---DTYNIL------------ 242 (577)
Q Consensus 179 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~---~~~~~l------------ 242 (577)
+.+..++..+..++.+.|++++|.+.++.+.+. .|+ . ..|..+
T Consensus 91 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~~~~~~~~~~~ 149 (450)
T 2y4t_A 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS---------------------NPSENEEKEAQSQLIKSDEMQRLRSQ 149 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---------------------CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------------CCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 335788899999999999999988887655432 122 2 344443
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcC
Q 008097 243 ISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYREN 322 (577)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 322 (577)
...+...|++++|+..|+++.+.. +.+..++..+..+|.+.|++++|.+.|+.+....+ .+..+|..+...|...|
T Consensus 150 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 150 ALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN---DNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC---SCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcC
Confidence 455889999999999999998764 45788899999999999999999999999987633 36788999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCceeh-HHH------------HHHhhhcCCHHHHHHHHHHHHHcCCCCC-----HhhHHHHHH
Q 008097 323 QQDEALEYLKQMEKLFPRAVDR-SLK------------ILGFCVDGNVEDAKRCFDQMIEEGGVPN-----VVIYDCLIH 384 (577)
Q Consensus 323 ~~~~A~~~~~~~~~~~p~~~~~-~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~li~ 384 (577)
++++|...|+++.+..|+.... ..+ ...|.+.|++++|...|+++.+. .|+ ...|..+..
T Consensus 226 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 226 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICH 303 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHH
Confidence 9999999999999988876543 333 67889999999999999999985 344 457889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHH-----
Q 008097 385 AYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKA----- 458 (577)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~----- 458 (577)
.+.+.|++++|+..++++.+.. +.+...+..+..+|...|++++|...|++.+. +.| +...+..+..+
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~ 377 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE-----HNENDQQIREGLEKAQRLLK 377 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----hCcchHHHHHHHHHHHHHhh
Confidence 9999999999999999998742 23678899999999999999999999995555 567 45566666633
Q ss_pred -------HHHcC-----ChhHHHHHHHH
Q 008097 459 -------LCEKG-----GFQSASMLLVQ 474 (577)
Q Consensus 459 -------~~~~g-----~~~~A~~~~~~ 474 (577)
|...| ..+++.+.+++
T Consensus 378 ~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 378 QSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred cccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 33344 45566666665
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.8e-20 Score=193.77 Aligned_cols=434 Identities=10% Similarity=-0.008 Sum_probs=317.1
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHH
Q 008097 11 ESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMK 89 (577)
Q Consensus 11 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~ 89 (577)
...+..+...+.+.|++++|++.|+.+.+..+ .+...|..+...|.+. ++++|++.|+ ...... +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTT-KALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHH-HHHhcC-CchHHHHHHHHH
Confidence 45678888899999999999999999987653 4778888888888888 9999999998 555543 235777888888
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCC------CceeHHHHHHHHHhcCCh
Q 008097 90 GLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEP------NDVTFSILICAYCKEENL 163 (577)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~ 163 (577)
++...|++++|...|+.+ .. .|+ .....+..+...+....|...++++... ........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999999633 32 222 2223344566667778888888888642 223345556666677777
Q ss_pred HHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHhc-CCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCC------
Q 008097 164 VNALVLLEKSFSFGFVPDVVTI-TKVLELLCSV-GRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPN------ 235 (577)
Q Consensus 164 ~~A~~~~~~m~~~g~~~~~~~~-~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~------ 235 (577)
+.+...+..... ..+....+ ..+...+... +.+..+. |++++|..+|+.+.+.... +
T Consensus 177 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~------------~~~~~A~~~~~~~l~~~p~-~~~~~~~ 241 (537)
T 3fp2_A 177 HLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVAN------------DLLTKSTDMYHSLLSANTV-DDPLREN 241 (537)
T ss_dssp HHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHH------------HHHHHHHHHHHHHHC--CC-CHHHHHH
T ss_pred HHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHH------------HHHHHHHHHHHHHHHHCCC-cchhhHH
Confidence 776665544321 12222222 2222222111 2222222 3455566667777664322 2
Q ss_pred -hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 236 -VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 236 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
..++..+...+...|++++|...|+++.+. .|+..++..+...|...|++++|...++.+....+ .+..++..+
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l 316 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP---EYPPTYYHR 316 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT---TCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC---CCHHHHHHH
Confidence 234666777888999999999999999986 56688899999999999999999999999988633 267789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVR 393 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (577)
...+...|++++|...++++.+..|+ ...+..+...|...|++++|...|+++.+.. +.+...|..+...|...|+++
T Consensus 317 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 395 (537)
T 3fp2_A 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFD 395 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHH
Confidence 99999999999999999999987775 4567888899999999999999999999863 345778999999999999999
Q ss_pred HHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHH
Q 008097 394 EASELMKEMTGHG-----YLPIASTFNTVLSGLCRQ----------GNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIK 457 (577)
Q Consensus 394 ~A~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~ 457 (577)
+|++.|+++.+.. .......+......+... |++++|...|++.+. ..| +...|..+..
T Consensus 396 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-----~~p~~~~~~~~l~~ 470 (537)
T 3fp2_A 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE-----LDPRSEQAKIGLAQ 470 (537)
T ss_dssp HHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH-----HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH-----hCCCCHHHHHHHHH
Confidence 9999999987532 111122344455677777 999999999996665 355 6788999999
Q ss_pred HHHHcCChhHHHHHHHHHHHC
Q 008097 458 ALCEKGGFQSASMLLVQMVGK 478 (577)
Q Consensus 458 ~~~~~g~~~~A~~~~~~m~~~ 478 (577)
+|.+.|++++|.+.+++..+.
T Consensus 471 ~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 471 LKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999853
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.3e-20 Score=193.68 Aligned_cols=256 Identities=14% Similarity=-0.027 Sum_probs=209.2
Q ss_pred hhhHHHHHHHHHh---cCChhHHHHHHHHHHH-----CCC--------CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 008097 236 VDTYNILISSYCE---TGVLDSALDVFNDMKI-----DGI--------SWNFVTYDTLIRGLCSGGRIDDGLKILQLMED 299 (577)
Q Consensus 236 ~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 299 (577)
...+......+.. .|++++|...|+++.+ ... +.+..++..+...+...|++++|...++.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444444444 8999999999999987 311 23456788888999999999999999999988
Q ss_pred ccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhh
Q 008097 300 SKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFP-RAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVI 378 (577)
Q Consensus 300 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 378 (577)
..+ +...+..+...+...|++++|...++++.+..| +...+..+...|...|++++|...|+++.+.. +.+...
T Consensus 266 ~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 340 (514)
T 2gw1_A 266 LFP----RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFP 340 (514)
T ss_dssp HCC----CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHH
T ss_pred hCc----cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHH
Confidence 732 267788899999999999999999999998766 45667788889999999999999999999863 336778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC-------ccc
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG-------SGH 451 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~-------~~~ 451 (577)
|..+...|...|++++|+..++++.+.. +.+..++..+...+...|++++|...+++.+. ..|+ ...
T Consensus 341 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~ 414 (514)
T 2gw1_A 341 YIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIE-----LENKLDGIYVGIAP 414 (514)
T ss_dssp HHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHTSSSCSSCSHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hhhccchHHHHHHH
Confidence 9999999999999999999999998742 23567888899999999999999999995554 2232 338
Q ss_pred HHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchHHHH
Q 008097 452 YSPLIKALCE---KGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWLLL 503 (577)
Q Consensus 452 ~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 503 (577)
|..+..+|.+ .|++++|.+.++++.+.. +.+..+|..+...+...|+.+.+
T Consensus 415 ~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 415 LVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999 999999999999998642 33467888899999999987644
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=7.6e-19 Score=181.49 Aligned_cols=398 Identities=12% Similarity=0.045 Sum_probs=295.2
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHH
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAI 86 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ 86 (577)
|.++.++..+...|.+.|++++|++.|+.+.+.++ .+...|..+...+... ++++|+..|+ .+.. .|+. ...
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~---~~~~--~~~ 128 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANESLGNFTDAMFDLS-VLSL---NGDF--DGA 128 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-------------
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHcCCHHHHHHHHH-HHhc---CCCC--ChH
Confidence 56889999999999999999999999999988653 4678888888888888 9999999997 5532 2222 122
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCce---eHHHHHHHHHh--
Q 008097 87 LMKGLCLTNRVGDGFKLLHVMKSRG--VKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDV---TFSILICAYCK-- 159 (577)
Q Consensus 87 ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~-- 159 (577)
.+..+...+....|...++.+.+.. ..+........+..|....+.+.+...+....+.+.. .+..+...+..
T Consensus 129 ~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 208 (537)
T 3fp2_A 129 SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD 208 (537)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhh
Confidence 3445555666788999999987642 1112223345566677788888888777776654443 33333333322
Q ss_pred ------cCChHHHHHHHHHHHhCCCCCCHh-------hHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHH
Q 008097 160 ------EENLVNALVLLEKSFSFGFVPDVV-------TITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKE 226 (577)
Q Consensus 160 ------~~~~~~A~~~~~~m~~~g~~~~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~ 226 (577)
.|++++|+..|+++...... +.. ++..+...+...|++++|...+ ..
T Consensus 209 ~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~-------------------~~ 268 (537)
T 3fp2_A 209 EGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLL-------------------QE 268 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-------------------HH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHH-------------------HH
Confidence 24789999999999875422 222 3445555566666666666654 44
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC
Q 008097 227 MERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG 306 (577)
Q Consensus 227 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 306 (577)
.... .|+...|..+...|...|++++|...|+++.+.. +.+..++..+...|...|++++|...++.+....+.
T Consensus 269 ~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--- 342 (537)
T 3fp2_A 269 SINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE--- 342 (537)
T ss_dssp HHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred HHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---
Confidence 4443 3567888889999999999999999999998764 446788999999999999999999999999887433
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCC-----CCHhhHH
Q 008097 307 RISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGV-----PNVVIYD 380 (577)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~ 380 (577)
+...|..+...+...|++++|...++++.+..|+ ...+..+...|...|++++|...|+++.+.... .....+.
T Consensus 343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 5678999999999999999999999999987775 457788888999999999999999998875211 1122244
Q ss_pred HHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 381 CLIHAYCQE----------ERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 381 ~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
.....|... |++++|+..|++..+.. +.+...+..+...+...|++++|...|++.+.
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 556777777 99999999999999743 23567889999999999999999999996666
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=1.3e-17 Score=162.52 Aligned_cols=312 Identities=11% Similarity=0.011 Sum_probs=208.2
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHH
Q 008097 149 TFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEME 228 (577)
Q Consensus 149 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~ 228 (577)
.|..+...+...|++++|+..|+++.... +.+..++..+...+...|++++|...++.+.+
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------ 65 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIA------------------ 65 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHH------------------
Confidence 44555555666666666666666665543 22355566666666666666666655443322
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--cCHHHHHHH------------HHHHHcCCChHHHHHHH
Q 008097 229 RKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGIS--WNFVTYDTL------------IRGLCSGGRIDDGLKIL 294 (577)
Q Consensus 229 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l------------l~~~~~~g~~~~a~~~~ 294 (577)
.. +.+...|..+...|...|++++|...|+++.+.... .+...+..+ ...+...|++++|.+.+
T Consensus 66 -~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 143 (359)
T 3ieg_A 66 -LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFL 143 (359)
T ss_dssp -HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -hC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 11 114456666666667777777777777766654210 133333333 46677778888888888
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCC
Q 008097 295 QLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGV 373 (577)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 373 (577)
+.+....+ .+...+..+...+...|++++|...++++.+..|+ ...+..+...|...|++++|...|++..+.. +
T Consensus 144 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~ 219 (359)
T 3ieg_A 144 DKILEVCV---WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-Q 219 (359)
T ss_dssp HHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHhCC---CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 87776532 25566777777788888888888888887776554 4556667777778888888888888877752 2
Q ss_pred CCHhhHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 374 PNVVIYD------------CLIHAYCQEERVREASELMKEMTGHGYLPI-A----STFNTVLSGLCRQGNVGTALKLVEE 436 (577)
Q Consensus 374 p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~ 436 (577)
.+...+. .+...+.+.|++++|+..++++.+.. |+ . ..+..+...+...|++++|...+++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 2333333 33667888999999999999988743 44 2 2344567888999999999999996
Q ss_pred hhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 008097 437 DMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPD-YLTWNSLLICL 494 (577)
Q Consensus 437 ~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~ 494 (577)
.+. ..| +...|..+..+|.+.|++++|.+.+++..+ +.|+ ...+..|..+.
T Consensus 298 ~~~-----~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 298 VLQ-----MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred HHH-----hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 555 355 778899999999999999999999999984 5566 45566555554
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=1.5e-17 Score=161.98 Aligned_cols=324 Identities=12% Similarity=0.054 Sum_probs=193.4
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHH
Q 008097 81 DYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAY 157 (577)
Q Consensus 81 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 157 (577)
+..+..+...+...|++++|...|+++++.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4455666677777788888888887777753 23566777777777777888887777777653 2455677777777
Q ss_pred HhcCChHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCC
Q 008097 158 CKEENLVNALVLLEKSFSFGFV--PDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPN 235 (577)
Q Consensus 158 ~~~~~~~~A~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 235 (577)
...|++++|+..|+++...... .+...+..+.....
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------------------------ 119 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE------------------------------------------ 119 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH------------------------------------------
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH------------------------------------------
Confidence 7888888888888877654310 12222222211110
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVL 315 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 315 (577)
...+..+...+...|++++|+..|+++.+.. +.+...+..+...|...|++++|...++.+.... +.+...+..+.
T Consensus 120 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la 195 (359)
T 3ieg_A 120 MQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK---SDNTEAFYKIS 195 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHH
Confidence 0112223344555555555555555555432 2344555555555555666666666665555432 22444555555
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCcee-hH------------HHHHHhhhcCCHHHHHHHHHHHHHcCCCCCH----hh
Q 008097 316 YGLYRENQQDEALEYLKQMEKLFPRAVD-RS------------LKILGFCVDGNVEDAKRCFDQMIEEGGVPNV----VI 378 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~ 378 (577)
..+...|++++|...+++..+..|+... +. .+...+.+.|++++|...|+++.+.... +. ..
T Consensus 196 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 274 (359)
T 3ieg_A 196 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRS 274 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHH
Confidence 5566666666666666665555444322 11 2244566777777887777777765221 22 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC-cccHHHHH
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG-SGHYSPLI 456 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~-~~~~~~li 456 (577)
|..+...|...|++++|++.+++..+. .| +..++..+...+...|++++|...|++.+. +.|+ ...+..+.
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-----~~p~~~~~~~~l~ 347 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE-----HNENDQQIREGLE 347 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCChHHHHHHH
Confidence 445667777888888888888887764 34 566777777888888888888888885444 4563 44444444
Q ss_pred HHH
Q 008097 457 KAL 459 (577)
Q Consensus 457 ~~~ 459 (577)
.+.
T Consensus 348 ~~~ 350 (359)
T 3ieg_A 348 KAQ 350 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=3.6e-17 Score=157.37 Aligned_cols=290 Identities=11% Similarity=0.035 Sum_probs=213.1
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 008097 179 VPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDV 258 (577)
Q Consensus 179 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 258 (577)
..+...+..+...+...|++++|.++++.+ .... +.+...+..++..+...|++++|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~-------------------l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~ 78 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVV-------------------MEKD-PFHASCLPVHIGTLVELNKANELFYL 78 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHH-------------------HHHC-TTCTTTHHHHHHHHHHHTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------HHcC-CCChhhHHHHHHHHHHhhhHHHHHHH
Confidence 344555666666666666666666664433 3221 12455666677777888888888888
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 008097 259 FNDMKIDGISWNFVTYDTLIRGLCSGG-RIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKL 337 (577)
Q Consensus 259 ~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 337 (577)
++++.+.. +.+...+..+...+...| ++++|.+.|+.+....+ .+...|..+...+...|++++|...++++.+.
T Consensus 79 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 154 (330)
T 3hym_B 79 SHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK---TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL 154 (330)
T ss_dssp HHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT---TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 88887653 335677777888888888 88888888888876532 25667888888888888888888888888876
Q ss_pred CCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CC
Q 008097 338 FPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHG--------YL 408 (577)
Q Consensus 338 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~ 408 (577)
.|+ ...+..+...|...|++++|...|+++.+. .+.+...|..+...|...|++++|+..+++..+.. ..
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 233 (330)
T 3hym_B 155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233 (330)
T ss_dssp TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTT
T ss_pred ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccccc
Confidence 665 455666777888888899999988888875 23467888889999999999999999998887521 12
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHH
Q 008097 409 PIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPD-YLT 486 (577)
Q Consensus 409 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~ 486 (577)
.+..++..+...+...|++++|...+++.+. +.| +...|..+..+|.+.|++++|.+.+++..+ +.|+ ...
T Consensus 234 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~ 306 (330)
T 3hym_B 234 KWEPLLNNLGHVCRKLKKYAEALDYHRQALV-----LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFS 306 (330)
T ss_dssp TCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-----hCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHH
Confidence 3456788888899999999999999996555 344 677888999999999999999999999874 4554 566
Q ss_pred HHHHHHHH-HhcchH
Q 008097 487 WNSLLICL-SQQTTW 500 (577)
Q Consensus 487 ~~~ll~~~-~~~~~~ 500 (577)
|..+..++ ...|+.
T Consensus 307 ~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 307 VTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHhCch
Confidence 77777766 445543
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=7.2e-17 Score=155.23 Aligned_cols=290 Identities=11% Similarity=-0.040 Sum_probs=143.3
Q ss_pred CCcchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 008097 114 PNSVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLE 190 (577)
Q Consensus 114 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 190 (577)
.+..++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|...++++.... +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3445555555566666666666666665542 233344455555556666666666666555432 223444555555
Q ss_pred HHHhcC-CHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc
Q 008097 191 LLCSVG-RVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISW 269 (577)
Q Consensus 191 ~~~~~g-~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 269 (577)
.+...| ++++|.+.++.+ .... +.+...|..+...+...|++++|+..|+++.+.. +.
T Consensus 99 ~~~~~~~~~~~A~~~~~~a-------------------~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~ 157 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKA-------------------TTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KG 157 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHH-------------------HTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TT
T ss_pred HHHHhhhhHHHHHHHHHHH-------------------HHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cc
Confidence 555555 455554443322 2111 1134445555555555666666666665555442 22
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHH
Q 008097 270 NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKIL 349 (577)
Q Consensus 270 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~ 349 (577)
+...+..+...|...|++++|...++.+.... +.+...+..+...+...|++++|...++++.+..|....
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------ 228 (330)
T 3hym_B 158 CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN------ 228 (330)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc------
Confidence 33444445555555555555555555555432 113344555555555555555555555554432100000
Q ss_pred HhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008097 350 GFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGT 429 (577)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 429 (577)
....+.+..+|..+...|...|++++|+..+++..+.. +.+...+..+...+.+.|++++
T Consensus 229 -------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 288 (330)
T 3hym_B 229 -------------------EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFEN 288 (330)
T ss_dssp -------------------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHH
T ss_pred -------------------cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHH
Confidence 00012233455555555666666666666666555432 1234455555555566666666
Q ss_pred HHHHHHHhhcccCCCCCC-CcccHHHHHHHH
Q 008097 430 ALKLVEEDMRGIGRGSLP-GSGHYSPLIKAL 459 (577)
Q Consensus 430 a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~ 459 (577)
|...|++.+. +.| +...+..+..++
T Consensus 289 A~~~~~~al~-----~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 289 AVDYFHTALG-----LRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHTTTT-----TCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc-----cCCCchHHHHHHHHHH
Confidence 6666653222 344 444555555555
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=1e-15 Score=157.51 Aligned_cols=167 Identities=11% Similarity=0.082 Sum_probs=85.4
Q ss_pred HHHHHHHHHhh-cCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC-H-hhHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 326 EALEYLKQMEK-LFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN-V-VIYDCLIHAYCQEERVREASELMKE 401 (577)
Q Consensus 326 ~A~~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~ 401 (577)
+|..+|++..+ ..|+ ...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44455554443 3332 233444444445555555555555555552 232 1 3566666666666666666666666
Q ss_pred HHhCCCCCC-HHHHHHHHHH-HHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 008097 402 MTGHGYLPI-ASTFNTVLSG-LCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGK 478 (577)
Q Consensus 402 m~~~g~~p~-~~~~~~ll~~-~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 478 (577)
..+. .|+ ...+...... +...|+.++|..+|++.+. ..| +...|..+++.+.+.|+.++|..++++....
T Consensus 382 Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~-----~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 382 ARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK-----KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-----HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 6543 222 2222222212 2245666666666664444 234 4556666666666666666666666666654
Q ss_pred C-CCCC--HHHHHHHHHHHHhcchHH
Q 008097 479 G-ILPD--YLTWNSLLICLSQQTTWL 501 (577)
Q Consensus 479 ~-~~p~--~~~~~~ll~~~~~~~~~~ 501 (577)
+ ..|+ ...|...+.-...+|+.+
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 2 2222 335666666566666554
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=1.4e-17 Score=163.08 Aligned_cols=298 Identities=12% Similarity=-0.002 Sum_probs=175.7
Q ss_pred HhcCCHhHHHH-HHHhccC-----C--CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 008097 127 CKNGKVGRARS-LMSDMEE-----P--NDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRV 198 (577)
Q Consensus 127 ~~~g~~~~A~~-~~~~~~~-----~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 198 (577)
...|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.... +.+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 33466666666 6664432 1 23456666666666666666666666666543 22344555555555555555
Q ss_pred hHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHH
Q 008097 199 MDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLI 278 (577)
Q Consensus 199 ~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 278 (577)
++|...++ +..... +.+..++..+...|...|++++|...|+++.... +.+...+..+.
T Consensus 115 ~~A~~~~~-------------------~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 173 (368)
T 1fch_A 115 LLAISALR-------------------RCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAE 173 (368)
T ss_dssp HHHHHHHH-------------------HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---
T ss_pred HHHHHHHH-------------------HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 54444432 222221 1134445555555555555555555555554432 11111111000
Q ss_pred HHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---ceehHHHHHHhhhcC
Q 008097 279 RGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR---AVDRSLKILGFCVDG 355 (577)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g 355 (577)
. ... .. . ....+.. +..+...|++++|...|+++.+..|+ ...+..+...|.+.|
T Consensus 174 ~-------~~~-------~~------~-~~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g 231 (368)
T 1fch_A 174 E-------GAG-------GA------G-LGPSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG 231 (368)
T ss_dssp ---------------------------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred H-------Hhh-------hh------c-ccHHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC
Confidence 0 000 00 0 0000112 22233778888888888888887666 456677788888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 356 NVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 356 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
++++|...|+++... .+.+..+|..+...|...|++++|+..|+++.+.. +.+...+..+...|.+.|++++|...|+
T Consensus 232 ~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 309 (368)
T 1fch_A 232 EYDKAVDCFTAALSV-RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFL 309 (368)
T ss_dssp CHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888898888888875 23457788888899999999999999999888642 2356678888888999999999999988
Q ss_pred HhhcccCCCCCC------------CcccHHHHHHHHHHcCChhHHHHHHHHH
Q 008097 436 EDMRGIGRGSLP------------GSGHYSPLIKALCEKGGFQSASMLLVQM 475 (577)
Q Consensus 436 ~~m~~~~~~~~p------------~~~~~~~li~~~~~~g~~~~A~~~~~~m 475 (577)
+.+. +.| ....|..+..+|.+.|++++|..++++.
T Consensus 310 ~al~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 310 EALN-----MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHH-----HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHH-----hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 5554 223 1577888999999999999988877643
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=5.8e-15 Score=150.27 Aligned_cols=395 Identities=10% Similarity=-0.015 Sum_probs=277.4
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----c-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHh----cCCHhH
Q 008097 29 DVVKATDLVSRFNMTPSLKIFNSILDVLVK----E-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCL----TNRVGD 99 (577)
Q Consensus 29 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~ 99 (577)
.+.+.+....+ ..+...+..+-..|.. . ++++|+..|+ ...+.| +...+..|-..|.. .+++++
T Consensus 25 ~~~~~~~~~a~---~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~-~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 25 VNLEQLKQKAE---SGEAKAQLELGYRYFQGNETTKDLTQAMDWFR-RAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp CCHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH-HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHH-HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 34555555544 2456666677777766 5 8888888888 444433 55666777777777 788888
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCHhHHHHHHHhccC-CCceeHHHHHHHHHh----cCChHHHHHHH
Q 008097 100 GFKLLHVMKSRGVKPNSVIYNTLIHSLCK----NGKVGRARSLMSDMEE-PNDVTFSILICAYCK----EENLVNALVLL 170 (577)
Q Consensus 100 a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~ 170 (577)
|.+.|++..+.| +...+..|..+|.. .+++++|...|++..+ .+...+..+...|.. .++.++|++.|
T Consensus 98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 888888888765 55667777778877 7788888888888764 355667777777776 77888888888
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 008097 171 EKSFSFGFVPDVVTITKVLELLCS----VGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSY 246 (577)
Q Consensus 171 ~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 246 (577)
++..+.| +...+..+...|.. .++.++|.+.++...+. .+...+..+...|
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------------------~~~~a~~~lg~~y 229 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----------------------GDELGQLHLADMY 229 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------------------TCHHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----------------------CCHHHHHHHHHHH
Confidence 8887764 56777777777777 78888888888886442 1445566666666
Q ss_pred Hh----cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH
Q 008097 247 CE----TGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCS----GGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL 318 (577)
Q Consensus 247 ~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 318 (577)
.. .+++++|..+|++..+.| +...+..+...|.. .++.++|...|+...+. + +...+..+...|
T Consensus 230 ~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~---~~~a~~~Lg~~y 301 (490)
T 2xm6_A 230 YFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--G---NSDGQYYLAHLY 301 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--T---CHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHH
Confidence 65 678888888888877654 44556666666666 77888888888887754 3 455667777777
Q ss_pred Hhc-----CCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcC---CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh--
Q 008097 319 YRE-----NQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDG---NVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ-- 388 (577)
Q Consensus 319 ~~~-----g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-- 388 (577)
... +++++|...|++..+.. +...+..+...|...| +.++|.+.|++..+. .+...+..+...|..
T Consensus 302 ~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~ 377 (490)
T 2xm6_A 302 DKGAEGVAKNREQAISWYTKSAEQG-DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGK 377 (490)
T ss_dssp HHCBTTBCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTS
T ss_pred HcCCCCCcCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCC
Confidence 776 78888888888877653 3344555666666655 678888888888875 467778888888887
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcccCCCCC-C-CcccHHHHHHHHH
Q 008097 389 --EERVREASELMKEMTGHGYLPIASTFNTVLSGLCR----QGNVGTALKLVEEDMRGIGRGSL-P-GSGHYSPLIKALC 460 (577)
Q Consensus 389 --~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~m~~~~~~~~-p-~~~~~~~li~~~~ 460 (577)
.+++++|++.|++..+.| +...+..+...|.+ .++.++|..+|++.+. .+.. | +......+..++.
T Consensus 378 g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 378 GVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST---NDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHTTSCH
T ss_pred CCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---CCCCCcCCHHHHHHHHhcCH
Confidence 788888888888888765 45566777777777 7888888888885555 2211 2 4445555555544
Q ss_pred HcCC--hhHHHHHHHHHH
Q 008097 461 EKGG--FQSASMLLVQMV 476 (577)
Q Consensus 461 ~~g~--~~~A~~~~~~m~ 476 (577)
.... .+.|.+++++.+
T Consensus 452 ~~~~~a~~~a~~~~~~~~ 469 (490)
T 2xm6_A 452 KQLQQAELLSQQYIEKYA 469 (490)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 4322 234777887763
No 20
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=1.2e-14 Score=155.42 Aligned_cols=383 Identities=12% Similarity=0.099 Sum_probs=286.0
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCC---CCHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCHhhH
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNMT---PSLKIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDDYTY 84 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~~ 84 (577)
..+|.-....+++|...|.+.+|+++++++.-. +. .+....|.++.+..+.+..+..++.. ... .+..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~-~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~-kLd-------~~d~ 1052 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLD-NSVFSEHRNLQNLLILTAIKADRTRVMEYIN-RLD-------NYDA 1052 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcC-CCcccccHHHHHHHHHHHHHhChhhHHHHHH-Hhh-------hccH
Confidence 346667788999999999999999999999732 22 34566777777777777777777766 332 2223
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChH
Q 008097 85 AILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLV 164 (577)
Q Consensus 85 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 164 (577)
.-+...+...|.+++|..+|++... .....+.+ +-..|++++|.++.++.. +..+|..+..++...|+++
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHH
Confidence 4467778899999999999998621 11222223 237899999999999874 4678999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 008097 165 NALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILIS 244 (577)
Q Consensus 165 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 244 (577)
+|++.|.+. -|...|..++.++.+.|++++|.+.+..+.+ .. ++....+.++.
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk-------------------~~--~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK-------------------KA--RESYVETELIF 1175 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------hc--ccccccHHHHH
Confidence 999999764 4678888999999999999999888654322 21 23333445888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCH
Q 008097 245 SYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQ 324 (577)
Q Consensus 245 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 324 (577)
+|++.+++++.... .. .++...|..+...|...|++++|..+|..+ ..|..+...+.+.|++
T Consensus 1176 aYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~ 1237 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEY 1237 (1630)
T ss_pred HHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----------hHHHHHHHHHHHhCCH
Confidence 89999888853333 22 456677778889999999999999999875 2688999999999999
Q ss_pred HHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 325 DEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 325 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
++|.+.+++. .+..+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++....
T Consensus 1238 q~AIEaarKA----~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1238 QAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HHHHHHHHHh----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999887 345778888888888899888888776543 3666777899999999999999999988775
Q ss_pred CCCCCCH-HHHHHH--HHHHHhcCCHHHHHHHHHHhhcccCCCCCC------CcccHHHHHHHHHHcCChhHHHH
Q 008097 405 HGYLPIA-STFNTV--LSGLCRQGNVGTALKLVEEDMRGIGRGSLP------GSGHYSPLIKALCEKGGFQSASM 470 (577)
Q Consensus 405 ~g~~p~~-~~~~~l--l~~~~~~g~~~~a~~~~~~~m~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~ 470 (577)
. .|.+ ..|.-+ +.+-.+-++..++.++|...+. ++| +..+|.-++-.|.+.|+++.|..
T Consensus 1309 L--eraH~gmftELaiLyaKy~peklmEhlk~f~~rin-----i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1309 L--ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN-----IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred c--ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-----cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3 3432 345344 4444556677778888774333 333 56779999999999999998884
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=1.6e-14 Score=147.07 Aligned_cols=352 Identities=11% Similarity=0.016 Sum_probs=286.9
Q ss_pred CHhhHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCHhHHHHHHHhccC-CCceeH
Q 008097 80 DDYTYAILMKGLCL----TNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCK----NGKVGRARSLMSDMEE-PNDVTF 150 (577)
Q Consensus 80 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~ 150 (577)
++..+..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|...|++..+ .+...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 66677777777777 899999999999999875 56788889999998 8999999999999875 466778
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHHHhhhcCChhHHHH
Q 008097 151 SILICAYCK----EENLVNALVLLEKSFSFGFVPDVVTITKVLELLCS----VGRVMDAVEILEESGEQGRLGKVKGGCR 222 (577)
Q Consensus 151 ~~li~~~~~----~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~g~~~~a~~ 222 (577)
..|...|.. .+++++|+..|++....| +...+..+...|.. .++.++|.+.
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~------------------ 173 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW------------------ 173 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH------------------
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH------------------
Confidence 888888888 789999999999998865 45667777777765 5566666655
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCChHHHHHHH
Q 008097 223 FLKEMERKGCLPNVDTYNILISSYCE----TGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCS----GGRIDDGLKIL 294 (577)
Q Consensus 223 ~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~ 294 (577)
|+...+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|...|
T Consensus 174 -~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 174 -YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp -HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred -HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 44444443 67788888888887 899999999999998865 56777778888876 78999999999
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhc-----CCHHHHHHHHH
Q 008097 295 QLMEDSKEGSKGRISPYNSVLYGLYR----ENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVD-----GNVEDAKRCFD 365 (577)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~ 365 (577)
+...+. + +...+..+...|.. .++.++|...|++..+.. +...+..+...|... ++.++|...|+
T Consensus 247 ~~a~~~--~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 247 SQSAEQ--G---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG-NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHTT--T---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHC--C---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 998875 3 55677778888887 899999999999987653 344566677777776 89999999999
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhh
Q 008097 366 QMIEEGGVPNVVIYDCLIHAYCQEE---RVREASELMKEMTGHGYLPIASTFNTVLSGLCR----QGNVGTALKLVEEDM 438 (577)
Q Consensus 366 ~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~m 438 (577)
+..+.+ +...+..+...|...| ++++|++.|++..+.| +...+..+...|.. .++.++|..+|++..
T Consensus 321 ~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~ 394 (490)
T 2xm6_A 321 KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA 394 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 999863 5678888888888766 7899999999999864 56778888888888 899999999999655
Q ss_pred cccCCCCCCCcccHHHHHHHHHH----cCChhHHHHHHHHHHHCCC
Q 008097 439 RGIGRGSLPGSGHYSPLIKALCE----KGGFQSASMLLVQMVGKGI 480 (577)
Q Consensus 439 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~ 480 (577)
. ..++..+..|..+|.+ .+++++|...+++..+.+.
T Consensus 395 ~------~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 395 E------QGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp H------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred h------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 5 2357788889999998 8999999999999997653
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=5.6e-18 Score=162.49 Aligned_cols=399 Identities=12% Similarity=0.121 Sum_probs=180.0
Q ss_pred ccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHH
Q 008097 23 RARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGF 101 (577)
Q Consensus 23 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 101 (577)
+.|++++|.+.++++. .| .+|..+..++.+. ++++|++.|. . .+|..+|..++.++...|++++|.
T Consensus 15 ~~~~ld~A~~fae~~~----~~--~vWs~La~A~l~~g~~~eAIdsfi-k------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN----EP--AVWSQLAKAQLQKGMVKEAIDSYI-K------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC----Ch--HHHHHHHHHHHHcCCHHHHHHHHH-c------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 7788999999999993 23 4899999999999 9999999997 2 367889999999999999999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 008097 102 KLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPD 181 (577)
Q Consensus 102 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~ 181 (577)
+.++...+. .+++.+.+.++.+|.++|+++++.++++. |+..+|+.+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT--------
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 988877774 45678899999999999999999988864 78889999999999999999999999976
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 008097 182 VVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFND 261 (577)
Q Consensus 182 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 261 (577)
..|..++.++.+.|++++|.+.+.. + .++.+|..++.+|...|+++.|......
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~K-------------------A------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARK-------------------A------NSTRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHH-------------------H------TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHH-------------------c------CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 4899999999999999999887543 2 2789999999999999999999666554
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhc--CCHHHHHHHHHHHhhcCC
Q 008097 262 MKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRE--NQQDEALEYLKQMEKLFP 339 (577)
Q Consensus 262 m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~p 339 (577)
+. +.|+ -...++..|.+.|++++|..+++.....+ +.....|+-+.-.|++- ++..+.++.|..-..++|
T Consensus 203 L~---~~ad--~l~~lv~~Yek~G~~eEai~lLe~aL~le---~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 203 IV---VHAD--ELEELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp TT---TCHH--HHHHHHHHHHHTTCHHHHHHHHHHHTTST---TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred HH---hCHh--hHHHHHHHHHHCCCHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence 32 2343 35578899999999999999999988652 23455677776666654 445555555554433333
Q ss_pred ------CceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008097 340 ------RAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAST 413 (577)
Q Consensus 340 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 413 (577)
+...|.-++..|.+.++++.|... |.+. +|+.---..+.+...+-.+.+--.+...--.+ ..|. .
T Consensus 275 ~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~--~ 345 (449)
T 1b89_A 275 VLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPL--L 345 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGG--G
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHH--H
Confidence 466788888888999999988763 4442 23322223333333344433322222222221 2343 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHH
Q 008097 414 FNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMV-GKGILPDYLTWNSLLI 492 (577)
Q Consensus 414 ~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~ 492 (577)
++.++.++...=+...+.++|+ . .+.-|-+..|-.-+ +..+....-+.+.++. + +-|..+.+.-|.
T Consensus 346 l~~ll~~l~~~ld~~r~v~~~~-~-----~~~l~l~~~yl~~v----~~~n~~~vnealn~l~ie---eed~~~lr~si~ 412 (449)
T 1b89_A 346 LNDLLMVLSPRLDHTRAVNYFS-K-----VKQLPLVKPYLRSV----QNHNNKSVNESLNNLFIT---EEDYQALRTSID 412 (449)
T ss_dssp HHHHHHHHGGGCCHHHHHHHHH-H-----TTCTTTTHHHHHHH----HTTCCHHHHHHHHHHHHH---TTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHH-H-----cCCcHHHHHHHHHH----HHhhHHHHHHHHHHHHHh---hhhHHHHHHHHH
Confidence 5566666666666666666666 2 22334333332111 1223333333333332 1 235556666666
Q ss_pred HHHhcchHHHH
Q 008097 493 CLSQQTTWLLL 503 (577)
Q Consensus 493 ~~~~~~~~~~~ 503 (577)
+|-.-....++
T Consensus 413 ~~~nfd~~~l~ 423 (449)
T 1b89_A 413 AYDNFDNISLA 423 (449)
T ss_dssp HCCCSCHHHHH
T ss_pred HhcCcCHHHHH
Confidence 65544444443
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=8.7e-15 Score=150.55 Aligned_cols=403 Identities=11% Similarity=0.026 Sum_probs=242.6
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHH
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAI 86 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ 86 (577)
|-+..+|..++.. .+.|++++|+.+|+.+.+.. +.+...|...+..+.+. ++++|..+|+ ..... .|+...|..
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~-ral~~--~p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQ-RCLMK--VLHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH-HHTTT--CCCHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhc--CCChHHHHH
Confidence 5678889999984 78899999999999998854 34788899999999988 9999999999 55543 467777777
Q ss_pred HHHHH-HhcCCHhHHHH----HHHHHHhC-CCCC-CcchHHHHHHHHHh---------cCCHhHHHHHHHhccC-CCc--
Q 008097 87 LMKGL-CLTNRVGDGFK----LLHVMKSR-GVKP-NSVIYNTLIHSLCK---------NGKVGRARSLMSDMEE-PND-- 147 (577)
Q Consensus 87 ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~-~~~-- 147 (577)
.+... ...|+.+.|.+ +|+..++. |..| +...|...+....+ .|+++.|+.+|++..+ |+.
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 77543 35677777765 77766553 5444 45678888877665 7899999999999875 322
Q ss_pred -eeHHHHHHHH-------------HhcCChHHHHHHHHHHH------hCC---CCCCH--------hhHHHHHHHHHhcC
Q 008097 148 -VTFSILICAY-------------CKEENLVNALVLLEKSF------SFG---FVPDV--------VTITKVLELLCSVG 196 (577)
Q Consensus 148 -~~~~~li~~~-------------~~~~~~~~A~~~~~~m~------~~g---~~~~~--------~~~~~ll~~~~~~g 196 (577)
..|....... .+.+++.+|..++.+.. +.. +.|+. ..|...+......+
T Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~ 244 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244 (530)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence 2333222211 12345666766665521 111 23321 22222221111100
Q ss_pred CHhHHHHHHHHHHHhhhcCCh----hHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCChh-------HHHHH
Q 008097 197 RVMDAVEILEESGEQGRLGKV----KGGCRFLKEMERKGCLPNVDTYNILISSYCE-------TGVLD-------SALDV 258 (577)
Q Consensus 197 ~~~~a~~~~~~~~~~~~~g~~----~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~ 258 (577)
...++. ..+..+|++..... +-+...|......+.+ .|+++ +|..+
T Consensus 245 ---------------~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 245 ---------------LRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp ---------------SCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred ---------------ccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 001111 23445566665542 2267788888887775 68877 88888
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCc-ccHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 008097 259 FNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRI-SPYNSVLYGLYRENQQDEALEYLKQMEKL 337 (577)
Q Consensus 259 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 337 (577)
|++..+.-.+.+...|..++..+.+.|++++|..+|+.+.+..+. +. ..|..++..+.+.|++++|.++|++..+.
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI---DPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc---CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 888875222445777888888888888888888888888875211 22 36777777777777777777777777665
Q ss_pred CCCcee-hHHHHH-HhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HH
Q 008097 338 FPRAVD-RSLKIL-GFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHG-YLPI--AS 412 (577)
Q Consensus 338 ~p~~~~-~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~ 412 (577)
.|.... +..... .+...|+.++|..+|++..+. .+.+...|..++..+.+.|+.++|..+|++....+ ..|+ ..
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 443211 111111 122355555555555555543 12234555555555555555555555555555432 1221 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 008097 413 TFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 413 ~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
.|...+......|+.+.+..+++
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444444555555555554
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=5e-17 Score=158.97 Aligned_cols=257 Identities=12% Similarity=0.013 Sum_probs=210.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+...|..+...+.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|...|+++....+ .+..+|..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP---NNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CCHHHHHHH
Confidence 45668999999999999999999999998764 45788999999999999999999999999998733 267789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCce-----------ehHHHHHHhhhcCCHHHHHHHHHHHHHcCCC-CCHhhHHHH
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRAV-----------DRSLKILGFCVDGNVEDAKRCFDQMIEEGGV-PNVVIYDCL 382 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l 382 (577)
...|...|++++|...|+++.+..|+.. .+..+...|.+.|++++|...|+++.+.... ++..+|..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999999988766422 2233477889999999999999999986322 168899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHH
Q 008097 383 IHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCE 461 (577)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~ 461 (577)
...|...|++++|++.|+++.+.. +.+..++..+..+|...|++++|...|++.+. +.| +...|..+..+|.+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE-----IQPGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCchHHHHHHHHHHHH
Confidence 999999999999999999999743 33677899999999999999999999996666 456 57889999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcchHHHH
Q 008097 462 KGGFQSASMLLVQMVGKGILPD-------------YLTWNSLLICLSQQTTWLLL 503 (577)
Q Consensus 462 ~g~~~~A~~~~~~m~~~~~~p~-------------~~~~~~ll~~~~~~~~~~~~ 503 (577)
.|++++|.+.++++.+. .|+ ..+|..|-.++...|..++.
T Consensus 294 ~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp HTCCHHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 99999999999998853 222 46688888887777776544
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=9.2e-17 Score=157.20 Aligned_cols=301 Identities=11% Similarity=-0.049 Sum_probs=193.4
Q ss_pred HHHhcCCHhHHHH-HHHHHHhCCCC---CCcchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCC
Q 008097 90 GLCLTNRVGDGFK-LLHVMKSRGVK---PNSVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEEN 162 (577)
Q Consensus 90 ~~~~~~~~~~a~~-~~~~~~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 162 (577)
++...|++++|.. .+++..+.... .+...+..+...|.+.|++++|...|+++.+ .+..+|..+...|.+.|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5567789999998 88866654321 1356788899999999999999999999874 456788999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 008097 163 LVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNIL 242 (577)
Q Consensus 163 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 242 (577)
+++|+..|+++.... +.+..++..+...+...|++++|...+ +.+...... +...+..+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~-------------------~~~~~~~~~-~~~~~~~~ 172 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEIL-------------------RDWLRYTPA-YAHLVTPA 172 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH-------------------HHHHHTSTT-TGGGCC--
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH-------------------HHHHHhCcC-cHHHHHHH
Confidence 999999999998765 346788889999999888888888774 444444222 22222211
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcC
Q 008097 243 ISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYREN 322 (577)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 322 (577)
... .. . ..+. ..+..+.. +...|++++|...|+.+....+.. ++..++..+...+.+.|
T Consensus 173 ~~~-------~~-------~----~~~~-~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~l~~~~~~~g 231 (368)
T 1fch_A 173 EEG-------AG-------G----AGLG-PSKRILGS-LLSDSLFLEVKELFLAAVRLDPTS-IDPDVQCGLGVLFNLSG 231 (368)
T ss_dssp --------------------------------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTS-CCHHHHHHHHHHHHHTT
T ss_pred HHH-------hh-------h----hccc-HHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCc-ccHHHHHHHHHHHHHcC
Confidence 000 00 0 0000 01111111 224566666666666665542211 13445556666666666
Q ss_pred CHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 323 QQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKE 401 (577)
Q Consensus 323 ~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 401 (577)
++++|...++++.+..|+ ...+..+...|.+.|++++|...|+++.+. .+.+..+|..+...|.+.|++++|...|++
T Consensus 232 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 310 (368)
T 1fch_A 232 EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL-QPGYIRSRYNLGISCINLGAHREAVEHFLE 310 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666666655443 345566666677777777777777777664 234577888888999999999999999988
Q ss_pred HHhCCCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 402 MTGHGYLPI------------ASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 402 m~~~g~~p~------------~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
+.+. .|+ ..+|..+..++...|+.++|..+++
T Consensus 311 al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 311 ALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 8753 221 5678889999999999999988876
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=1.3e-16 Score=156.09 Aligned_cols=270 Identities=10% Similarity=-0.026 Sum_probs=211.4
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 008097 181 DVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFN 260 (577)
Q Consensus 181 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 260 (577)
+...+..+...+.+.|++++|...++.++ ... +.+..+|..+...|...|++++|+..|+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al-------------------~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 123 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAI-------------------LQD-PGDAEAWQFLGITQAENENEQAAIVALQ 123 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHH-------------------HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHH-------------------HhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44568888888888888888888765543 322 2367889999999999999999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC-------CcccHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 261 DMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG-------RISPYNSVLYGLYRENQQDEALEYLKQ 333 (577)
Q Consensus 261 ~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~ 333 (577)
++.+.. +.+..++..+...|...|++++|...|+.+....+.... ....+..+...+.+.|++++|...+++
T Consensus 124 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (365)
T 4eqf_A 124 RCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLE 202 (365)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 998764 446889999999999999999999999999875322110 112234457889999999999999999
Q ss_pred HhhcCCC---ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-
Q 008097 334 MEKLFPR---AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP- 409 (577)
Q Consensus 334 ~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 409 (577)
+.+..|+ ...+..+...|...|++++|...|+++.+. .+.+..+|+.+..+|...|++++|+..|+++.+. .|
T Consensus 203 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~ 279 (365)
T 4eqf_A 203 AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPG 279 (365)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 9998775 567888889999999999999999999986 3446889999999999999999999999999974 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCC--------CCcccHHHHHHHHHHcCChhHHHHHHHH
Q 008097 410 IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSL--------PGSGHYSPLIKALCEKGGFQSASMLLVQ 474 (577)
Q Consensus 410 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 474 (577)
+..++..+..+|.+.|++++|...|++.+........ .+...|..+..++...|+.+.|....++
T Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 4778999999999999999999999965551101001 1367899999999999999998887765
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=1.1e-14 Score=147.75 Aligned_cols=366 Identities=11% Similarity=-0.012 Sum_probs=212.9
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHhC-----C---CCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC-------C
Q 008097 81 DYTYAILMKGLCLTNRVGDGFKLLHVMKSR-----G---VKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE-------P 145 (577)
Q Consensus 81 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~ 145 (577)
...|+.+...+...|++++|++.|++.++. + -+....+|+.+..+|...|++++|...|++..+ +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456777777777778888887777766442 1 112345677777778888888888777766532 1
Q ss_pred ----CceeHHHHHHHHHh--cCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHH---HhcCCHhHHHHHHHHHHHhhhcC
Q 008097 146 ----NDVTFSILICAYCK--EENLVNALVLLEKSFSFGFVPD-VVTITKVLELL---CSVGRVMDAVEILEESGEQGRLG 215 (577)
Q Consensus 146 ----~~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~g 215 (577)
...+++.+..++.. .+++++|+..|++..... |+ +..+..+..++ ...++.++|.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~----------- 197 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDP----------- 197 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHH-----------
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHH-----------
Confidence 12234444444443 346788888888877643 33 34444444332 233444444444
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHH
Q 008097 216 KVKGGCRFLKEMERKGCLPNVDTYNILISSYCE----TGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGL 291 (577)
Q Consensus 216 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 291 (577)
+++..+... .+...+..+...+.. .|++++|...+++..... +.+..++..+...|...|++++|.
T Consensus 198 --------~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~ 267 (472)
T 4g1t_A 198 --------LRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAI 267 (472)
T ss_dssp --------HHHHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------HHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHH
Confidence 333333221 134445444444433 456777888888776653 445667777888888888888888
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHh-------------------cCCHHHHHHHHHHHhhcCCC-ceehHHHHHHh
Q 008097 292 KILQLMEDSKEGSKGRISPYNSVLYGLYR-------------------ENQQDEALEYLKQMEKLFPR-AVDRSLKILGF 351 (577)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~ 351 (577)
..+++..+..|. +..++..+...|.. .+..++|...+++..+..|+ ...+..+...|
T Consensus 268 ~~~~~al~~~p~---~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~ 344 (472)
T 4g1t_A 268 ELLKKALEYIPN---NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLH 344 (472)
T ss_dssp HHHHHHHHHSTT---CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHH
T ss_pred HHHHHHHHhCCC---hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHH
Confidence 888887765322 44555555554432 13356778888888776654 56678888899
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCHh--hHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008097 352 CVDGNVEDAKRCFDQMIEEGGVPNVV--IYDCLIH-AYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVG 428 (577)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 428 (577)
...|++++|...|++..+....|... .+..+.. .+...|++++|+..|++..+ +.|+....... ..
T Consensus 345 ~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~~ 413 (472)
T 4g1t_A 345 ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------KD 413 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------HH
T ss_pred HHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------HH
Confidence 99999999999999998854332211 2233332 34467899999999999887 45664433222 23
Q ss_pred HHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHH
Q 008097 429 TALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKG-ILPDYLTWN 488 (577)
Q Consensus 429 ~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~ 488 (577)
.+.+++++.+. ..| +...|..+..+|...|++++|.+.+++..+.+ ..|+..+|.
T Consensus 414 ~l~~~~~~~l~-----~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 414 KLQKIAKMRLS-----KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHH-----HCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 34455554444 345 78899999999999999999999999998653 346665553
No 28
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=5.4e-18 Score=175.28 Aligned_cols=135 Identities=10% Similarity=0.067 Sum_probs=107.6
Q ss_pred ceehHHHHHHhhhcCCHHHHHHHHHHHHH---cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008097 341 AVDRSLKILGFCVDGNVEDAKRCFDQMIE---EGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTV 417 (577)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 417 (577)
..+|+++|++||++|++++|.++|++|.+ .|+.||++|||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45788888888888888888888877764 378888888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCC-HHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 008097 418 LSGLCRQGN-VGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPD 483 (577)
Q Consensus 418 l~~~~~~g~-~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 483 (577)
|.++++.|+ .++|.++|+ .|. ..|+.||..+|++++..+.|.+ +++.++++ ..+++|+
T Consensus 207 I~glcK~G~~~e~A~~Ll~-EM~--~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLE-QMS--QEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHH-HHH--HHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCC
T ss_pred HHHHHhCCCcHHHHHHHHH-HHH--HcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCC
Confidence 888888887 477888888 888 7888888888888887777653 34444444 3345554
No 29
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=2.9e-18 Score=177.30 Aligned_cols=150 Identities=12% Similarity=0.072 Sum_probs=127.4
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 008097 307 RISPYNSVLYGLYRENQQDEALEYLKQMEK-----LFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDC 381 (577)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 381 (577)
-..+||++|++|++.|++++|.++|.+|.+ ..||.++||++|++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346899999999999999999999988764 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC------cccHHH
Q 008097 382 LIHAYCQEER-VREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG------SGHYSP 454 (577)
Q Consensus 382 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~------~~~~~~ 454 (577)
+|.++++.|+ .++|.++|++|.+.|+.||.+||+++++++.+.+-++...++. .+..|+ .-+...
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~--------P~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK--------PTFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGC--------CCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhC--------cccCCCCCCcccccchHH
Confidence 9999999998 4789999999999999999999999998877754444433332 233332 445566
Q ss_pred HHHHHHHcCC
Q 008097 455 LIKALCEKGG 464 (577)
Q Consensus 455 li~~~~~~g~ 464 (577)
|.+.|.+.+.
T Consensus 278 L~dl~s~d~~ 287 (1134)
T 3spa_A 278 LRDVYAKDGR 287 (1134)
T ss_dssp THHHHCCCSC
T ss_pred HHHHHccCCC
Confidence 7788877764
No 30
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=2e-13 Score=146.12 Aligned_cols=343 Identities=13% Similarity=0.140 Sum_probs=255.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcC
Q 008097 84 YAILMKGLCLTNRVGDGFKLLHVMKSRG--VKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEE 161 (577)
Q Consensus 84 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 161 (577)
-....++|...|.+.+|.++++++.-.+ +..+....+.|+....+. +..+..+..++....+ ..-+...+...|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNE 1063 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCC
Confidence 3556788888888888888888887432 112345666677776666 5566666655555322 455677788888
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 008097 162 NLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNI 241 (577)
Q Consensus 162 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 241 (577)
.+++|..+|++.. -.....+.++. ..+++++|.++ .++. -+..+|..
T Consensus 1064 lyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~-------------------Aerv------n~p~vWsq 1110 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEF-------------------AERC------NEPAVWSQ 1110 (1630)
T ss_pred CHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHH-------------------HHhc------CCHHHHHH
Confidence 8888888888741 11111222221 34445555444 4433 15788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhc
Q 008097 242 LISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRE 321 (577)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 321 (577)
+..++...|++++|+..|.+. -|...|..++.+|.+.|++++|.+.+....+. . ++....+.++.+|++.
T Consensus 1111 LAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~--~--~e~~Idt~LafaYAKl 1180 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--A--RESYVETELIFALAKT 1180 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--c--ccccccHHHHHHHHhh
Confidence 999999999999999999664 37788889999999999999999999987765 2 2333445699999999
Q ss_pred CCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 322 NQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKE 401 (577)
Q Consensus 322 g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 401 (577)
+++++...+. ..++...+..+...|...|++++|..+|... ..|..+...|.+.|++++|++.+++
T Consensus 1181 ~rleele~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1181 NRLAELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred cCHHHHHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9988644442 2455566777888999999999999999985 3799999999999999999999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 008097 402 MTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGIL 481 (577)
Q Consensus 402 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 481 (577)
.. +..+|..+-.+|...|++..|..... . +..+++.+..++..|.+.|.+++|..+++... ++.
T Consensus 1247 A~------n~~aWkev~~acve~~Ef~LA~~cgl-~-------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL--~Le 1310 (1630)
T 1xi4_A 1247 AN------STRTWKEVCFACVDGKEFRLAQMCGL-H-------IVVHADELEELINYYQDRGYFEELITMLEAAL--GLE 1310 (1630)
T ss_pred hC------CHHHHHHHHHHHhhhhHHHHHHHHHH-h-------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccC
Confidence 73 45799999999999999999988766 3 34567788899999999999999999998887 455
Q ss_pred CC-HHHHHHHHHHHHhcchHHHH
Q 008097 482 PD-YLTWNSLLICLSQQTTWLLL 503 (577)
Q Consensus 482 p~-~~~~~~ll~~~~~~~~~~~~ 503 (577)
|. ...|.-|-..+++..-.++.
T Consensus 1311 raH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1311 RAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred hhHhHHHHHHHHHHHhCCHHHHH
Confidence 44 35677787777777655443
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=1.2e-15 Score=146.53 Aligned_cols=375 Identities=10% Similarity=0.081 Sum_probs=181.6
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHH
Q 008097 9 PDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAIL 87 (577)
Q Consensus 9 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~l 87 (577)
+++.+|..|+.++.+.|++++|++.|.+. ++...|..++..+... ++++|+..++ ..++. .+++.+.+.+
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~-~ark~--~~~~~i~~~L 100 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ-MARKK--ARESYVETEL 100 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHh--CccchhHHHH
Confidence 45569999999999999999999999764 5667899999998888 9999999777 44442 4567889999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHH
Q 008097 88 MKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNAL 167 (577)
Q Consensus 88 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 167 (577)
+.+|.+.|++.++.++++ .|+..+|+.+...|...|.+++|...|.++ ..|..++.++.+.|++++|+
T Consensus 101 i~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 101 IFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp --------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHH
Confidence 999999999999988774 367789999999999999999999999988 48999999999999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 008097 168 VLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYC 247 (577)
Q Consensus 168 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 247 (577)
+.++++ .++.+|..++.+|...|+++.|...... +..++.....++..|.
T Consensus 169 ea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------------------------L~~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 169 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------------------------IVVHADELEELINYYQ 218 (449)
T ss_dssp HHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------------------------TTTCHHHHHHHHHHHH
T ss_pred HHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------------------------HHhCHhhHHHHHHHHH
Confidence 999988 2789999999999999999999654211 1123344556889999
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC--CChHHHHHHHHHHHhccCCCCC------CcccHHHHHHHHH
Q 008097 248 ETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSG--GRIDDGLKILQLMEDSKEGSKG------RISPYNSVLYGLY 319 (577)
Q Consensus 248 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~------~~~~~~~li~~~~ 319 (577)
+.|++++|..+++...... +.....|+-+.-.|++- +++.+..+.|..-. ..+| +...|..+...|.
T Consensus 219 k~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i----ni~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV----NIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS----CHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988654 44566677776666654 45555555554221 1111 4677999999999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 008097 320 RENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELM 399 (577)
Q Consensus 320 ~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 399 (577)
+.++++.|.. .|.+..|+...-.. |.+++.+ ..|...|-..+.-|... .+ .++.-+
T Consensus 294 ~~~e~d~A~~---tm~~h~~~a~~~~~-----------------f~~~~~k--v~n~elyYkai~fyl~~-~p-~~l~~l 349 (449)
T 1b89_A 294 KYEEYDNAII---TMMNHPTDAWKEGQ-----------------FKDIITK--VANVELYYRAIQFYLEF-KP-LLLNDL 349 (449)
T ss_dssp HTTCHHHHHH---HHHHSTTTTCCHHH-----------------HHHHHHH--CSSTHHHHHHHHHHHHH-CG-GGHHHH
T ss_pred hhchHHHHHH---HHHhCChhhhhhHH-----------------HHHHHhc--hhHHHHHHHHHHHHHhc-CH-HHHHHH
Confidence 9999998875 44444444443333 3333332 23444555555555411 11 222222
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHH
Q 008097 400 KEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQ 474 (577)
Q Consensus 400 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 474 (577)
-......+.| ..++..+.+.|.+.-...++. .++ . .-+..+=.++-+.|....+++.-..-++.
T Consensus 350 l~~l~~~ld~-----~r~v~~~~~~~~l~l~~~yl~-~v~--~---~n~~~vnealn~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 350 LMVLSPRLDH-----TRAVNYFSKVKQLPLVKPYLR-SVQ--N---HNNKSVNESLNNLFITEEDYQALRTSIDA 413 (449)
T ss_dssp HHHHGGGCCH-----HHHHHHHHHTTCTTTTHHHHH-HHH--T---TCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhccCc-----HHHHHHHHHcCCcHHHHHHHH-HHH--H---hhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 2222111222 233444566666666666666 555 1 22344445566666777666555544443
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=2.3e-15 Score=144.48 Aligned_cols=256 Identities=11% Similarity=0.006 Sum_probs=211.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+...|..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|...++.+....+ .+..++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP---KDIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---CCHHHHHHH
Confidence 45567788888999999999999999998764 44778888899999999999999999999988632 266788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHH--------------H--HhhhcCCHHHHHHHHHHHHHcCCCCCHhh
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKI--------------L--GFCVDGNVEDAKRCFDQMIEEGGVPNVVI 378 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~--------------~--~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 378 (577)
...+...|++++|...++++.+..|+.......+ . .+...|++++|...++++.+.. +.+...
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 174 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL 174 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence 9999999999999999999988776554333322 3 3788899999999999999863 347889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHH
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIK 457 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~ 457 (577)
+..+...|...|++++|++.++++.+.. +.+..++..+...+...|++++|...|++.+. ..| +...|..+..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~~~~l~~ 248 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD-----INPGYVRVMYNMAV 248 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCHHHHHHHHH
Confidence 9999999999999999999999998753 33577899999999999999999999996555 345 6788999999
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcchHHHH
Q 008097 458 ALCEKGGFQSASMLLVQMVGKGILPD-------------YLTWNSLLICLSQQTTWLLL 503 (577)
Q Consensus 458 ~~~~~g~~~~A~~~~~~m~~~~~~p~-------------~~~~~~ll~~~~~~~~~~~~ 503 (577)
+|.+.|++++|.+.++++.+. .|+ ..+|..+..++...|+.+.+
T Consensus 249 ~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 249 SYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999853 444 56788888888888876543
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=2.8e-15 Score=143.79 Aligned_cols=264 Identities=10% Similarity=-0.011 Sum_probs=212.2
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 008097 181 DVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFN 260 (577)
Q Consensus 181 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 260 (577)
+...+......+...|++++|..+++.+ .+... .+...|..+...+...|++++|...|+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~-------------------~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 79 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAV-------------------CQAAP-EREEAWRSLGLTQAENEKDGLAIIALN 79 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHH-------------------HHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHH-------------------HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445666777777888888877775544 33322 267788899999999999999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH--------------HH-HHHhcCCHH
Q 008097 261 DMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV--------------LY-GLYRENQQD 325 (577)
Q Consensus 261 ~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~ 325 (577)
++.+.. +.+..++..+...|...|++++|.+.++.+....+. +...+..+ .. .+...|+++
T Consensus 80 ~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 80 HARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ---YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT---TTTC--------------------CCTTSHHHHH
T ss_pred HHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHH
Confidence 998763 447788999999999999999999999999876333 33334333 22 377889999
Q ss_pred HHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 326 EALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 326 ~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+|...++++.+..|+ ...+..+...|.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|++.|+++.+
T Consensus 156 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999987664 5667788889999999999999999998863 34678999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC-------------cccHHHHHHHHHHcCChhHHHHH
Q 008097 405 HGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG-------------SGHYSPLIKALCEKGGFQSASML 471 (577)
Q Consensus 405 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~-------------~~~~~~li~~~~~~g~~~~A~~~ 471 (577)
.. +.+..++..+...+...|++++|...+++.+. ..|+ ...|..+..+|.+.|++++|..+
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY-----MQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-----hCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 43 33577899999999999999999999996555 2333 67889999999999999999998
Q ss_pred HHHH
Q 008097 472 LVQM 475 (577)
Q Consensus 472 ~~~m 475 (577)
+++.
T Consensus 309 ~~~~ 312 (327)
T 3cv0_A 309 YAQN 312 (327)
T ss_dssp TTCC
T ss_pred HHHH
Confidence 8754
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=4.5e-15 Score=139.40 Aligned_cols=247 Identities=10% Similarity=0.029 Sum_probs=153.9
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCC
Q 008097 157 YCKEENLVNALVLLEKSFSFGFVPDV--VTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLP 234 (577)
Q Consensus 157 ~~~~~~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p 234 (577)
....|++++|+..+++.... .|+. .....+..+|...|+++.|...++ . .-+|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~-------------------~----~~~~ 63 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIK-------------------P----SSAP 63 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSC-------------------T----TSCH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhc-------------------c----cCCh
Confidence 34456666666666554322 2322 233445566666666666554321 1 1234
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISW-NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNS 313 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 313 (577)
+..++..+...+...|+.++|++.++++...+..| +...+..+...+.+.|++++|.+.++. +.+...+..
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--------~~~~~~~~~ 135 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--------GDSLECMAM 135 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------CCSHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------CCCHHHHHH
Confidence 55566666667777777777777777776655434 344555555677777777777777765 125556667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCceehH---HHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008097 314 VLYGLYRENQQDEALEYLKQMEKLFPRAVDRS---LKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE 390 (577)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (577)
++..+.+.|++++|.+.|+++.+..|+..... ..+..+...|++++|..+|+++.+. .+.+...|+.+..+|.+.|
T Consensus 136 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g 214 (291)
T 3mkr_A 136 TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQG 214 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcC
Confidence 77777777777777777777776666543211 1223333457777888888877776 4456777888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHhhc
Q 008097 391 RVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGT-ALKLVEEDMR 439 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~m~ 439 (577)
++++|.+.|++..+. .| +..++..++..+...|+.++ +.+++++.+.
T Consensus 215 ~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 215 RWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 888888888887763 34 55667777777777777765 4577764444
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=4e-15 Score=139.74 Aligned_cols=256 Identities=10% Similarity=0.036 Sum_probs=132.5
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHH
Q 008097 91 LCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLL 170 (577)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 170 (577)
....|++..|+...+........+.......+.++|...|+++.|...++....|+..++..+...+...++.++|++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l 88 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL 88 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 33456666666666554432211112233445566666676666666665543444455556666666666666666666
Q ss_pred HHHHhCCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 008097 171 EKSFSFGFVPD-VVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCET 249 (577)
Q Consensus 171 ~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 249 (577)
+++...+..|+ ...+..+..++...|++++|.+.++ . +.+...+..+...|.+.
T Consensus 89 ~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~-------------------~------~~~~~~~~~l~~~~~~~ 143 (291)
T 3mkr_A 89 DREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH-------------------Q------GDSLECMAMTVQILLKL 143 (291)
T ss_dssp HHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHT-------------------T------CCSHHHHHHHHHHHHHT
T ss_pred HHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHh-------------------C------CCCHHHHHHHHHHHHHC
Confidence 66665554343 3334444455555555555555431 1 12455555555566666
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHHH---HHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHH
Q 008097 250 GVLDSALDVFNDMKIDGISWNFVTY---DTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDE 326 (577)
Q Consensus 250 g~~~~A~~~~~~m~~~g~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 326 (577)
|++++|...|+++.+. .|+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.
T Consensus 144 g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~---p~~~~~~~~la~~~~~~----- 213 (291)
T 3mkr_A 144 DRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC---SPTLLLLNGQAACHMAQ----- 213 (291)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHT-----
T ss_pred CCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHc-----
Confidence 6666666666665554 2332111 112222333355555555555555441 12444444455555544
Q ss_pred HHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHHhC
Q 008097 327 ALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVRE-ASELMKEMTGH 405 (577)
Q Consensus 327 A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 405 (577)
|++++|...|+++.+. .+.+..+|..++..+...|+.++ +.++++++.+
T Consensus 214 ----------------------------g~~~eA~~~l~~al~~-~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~- 263 (291)
T 3mkr_A 214 ----------------------------GRWEAAEGVLQEALDK-DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD- 263 (291)
T ss_dssp ----------------------------TCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-
T ss_pred ----------------------------CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-
Confidence 5555555555554443 12355566666666666776654 4566666665
Q ss_pred CCCCCHH
Q 008097 406 GYLPIAS 412 (577)
Q Consensus 406 g~~p~~~ 412 (577)
+.|+..
T Consensus 264 -~~P~~~ 269 (291)
T 3mkr_A 264 -AHRSHP 269 (291)
T ss_dssp -HCTTCH
T ss_pred -hCCCCh
Confidence 335433
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=1.2e-13 Score=140.01 Aligned_cols=373 Identities=11% Similarity=-0.041 Sum_probs=237.2
Q ss_pred CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHh---h-cC--CCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCC----
Q 008097 44 PSLKIFNSILDVLVKE-DIDLARAFYRKKMM---A-SG--VQG-DDYTYAILMKGLCLTNRVGDGFKLLHVMKSRG---- 111 (577)
Q Consensus 44 ~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~---~-~~--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g---- 111 (577)
.....||.+-..+... ++++|++.|++.+. . .+ ..| ...+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3466788887777777 99999999884321 1 11 122 35678889999999999999999998876531
Q ss_pred --CCC-CcchHHHHHHHHHhc--CCHhHHHHHHHhccC--CC-ceeHHHHHHH---HHhcCChHHHHHHHHHHHhCCCCC
Q 008097 112 --VKP-NSVIYNTLIHSLCKN--GKVGRARSLMSDMEE--PN-DVTFSILICA---YCKEENLVNALVLLEKSFSFGFVP 180 (577)
Q Consensus 112 --~~~-~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~--~~-~~~~~~li~~---~~~~~~~~~A~~~~~~m~~~g~~~ 180 (577)
..+ ...++..+..++.+. +++++|...|++..+ |+ ...+..+... +...++.++|++.|++..+.. +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 111 234555555555554 579999999998764 44 4444444444 345688889999999887654 23
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 008097 181 DVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFN 260 (577)
Q Consensus 181 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 260 (577)
+..++..+...+...+.. .++.++|.+.+++...... .+...+..+...|...|++++|...|+
T Consensus 208 ~~~~~~~l~~~~~~~~~~---------------~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREE---------------GEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp CHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhh---------------hhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 455666665555544321 2333444444555554432 367788899999999999999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcC-------------------CChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhc
Q 008097 261 DMKIDGISWNFVTYDTLIRGLCSG-------------------GRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRE 321 (577)
Q Consensus 261 ~m~~~g~~~~~~~~~~ll~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 321 (577)
+..+.. +-+..++..+...|... +..+.|...++.....++ .+..++..+...+...
T Consensus 272 ~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 272 KALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND---NLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT---TTCCCHHHHHHHHHHT
T ss_pred HHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC---chhhhhhhHHHHHHHh
Confidence 998763 33556666665554321 235678888888877633 3667899999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCceeh----HHHHH-HhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 008097 322 NQQDEALEYLKQMEKLFPRAVDR----SLKIL-GFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREAS 396 (577)
Q Consensus 322 g~~~~A~~~~~~~~~~~p~~~~~----~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 396 (577)
|++++|...|++..+..|+.... ..+.. .+...|+.++|+..|++..+. .|+...+... ...+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHH
Confidence 99999999999998877664432 22222 245789999999999999984 5554333222 23445
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCccc
Q 008097 397 ELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGH 451 (577)
Q Consensus 397 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~ 451 (577)
+++++....+ +.+..+|..+...+...|++++|.+.|++.+. -....|+...
T Consensus 417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe--~~~~~p~a~~ 468 (472)
T 4g1t_A 417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLE--SGSLIPSASS 468 (472)
T ss_dssp HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCCcHhh
Confidence 5666666532 34667899999999999999999999997776 2333454433
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.2e-14 Score=134.28 Aligned_cols=226 Identities=11% Similarity=0.021 Sum_probs=190.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCC----cccH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGR----ISPY 311 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~ 311 (577)
...|..+...+...|++++|+..|++..+.. .+..++..+...|...|++++|...++......+...++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567788888999999999999999998876 678889999999999999999999999888764333223 4678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 008097 312 NSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEER 391 (577)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 391 (577)
..+...+...|++++|...|+++.+..|+. ..+.+.|++++|...++++... .+.+...|..+...|...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYV-NPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHc-CcchHHHHHHHHHHHHHhcC
Confidence 888899999999999999999999887773 4566778899999999999885 22356788899999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHH
Q 008097 392 VREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASM 470 (577)
Q Consensus 392 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 470 (577)
+++|++.|++..+.. +.+..++..+...+...|++++|...|++.+. ..| +...|..+..+|.+.|++++|.+
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE-----KDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999998753 33677899999999999999999999996665 345 57889999999999999999999
Q ss_pred HHHHHHH
Q 008097 471 LLVQMVG 477 (577)
Q Consensus 471 ~~~~m~~ 477 (577)
.+++..+
T Consensus 229 ~~~~a~~ 235 (258)
T 3uq3_A 229 TLDAART 235 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=3.6e-14 Score=127.20 Aligned_cols=194 Identities=17% Similarity=0.109 Sum_probs=97.3
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHH
Q 008097 234 PNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNS 313 (577)
Q Consensus 234 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 313 (577)
++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..+.+|. +...+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR---YLGGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHH
Confidence 455666666677777777777777777766542 335566666666777777777777777776665322 4455666
Q ss_pred HHHHHHhc-----------CCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 008097 314 VLYGLYRE-----------NQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDC 381 (577)
Q Consensus 314 li~~~~~~-----------g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 381 (577)
+...+.+. |++++|+..+++..+..|+. ..+..+...|...|++++|+..|++..+.. .+...|..
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 66666665 55555555555555544432 233334444444444444444444444433 34444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 382 LIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
+..+|...|++++|+..|++..+. .| +...+..+...+...|++++|+..|+
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 444444444444444444444432 12 23334444444444444444444444
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=1.2e-13 Score=128.95 Aligned_cols=243 Identities=13% Similarity=-0.027 Sum_probs=171.2
Q ss_pred CChhHHHHHHHHHHHcCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHH
Q 008097 215 GKVKGGCRFLKEMERKGC---LPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGL 291 (577)
Q Consensus 215 g~~~~a~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 291 (577)
|++++|...|+++.+... +.+...|..+...|...|++++|...|+++.+.. +.+..++..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 344555555666655421 1145677888888888899999999998888763 346778888888888889999999
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 008097 292 KILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEG 371 (577)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 371 (577)
..|+.+....+. +...+..+...+.+.|++++|...|+++.+..|+.......+..+...|++++|...|++....
T Consensus 98 ~~~~~al~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 98 EAFDSVLELDPT---YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHCTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcCcc---ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 999888876332 5677888888888889999998888888887777665555555566778888888888777765
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCC
Q 008097 372 GVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPI-----ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSL 446 (577)
Q Consensus 372 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~ 446 (577)
.+++...|. ++..+...++.++|++.+++..... |+ ..++..+...+.+.|++++|...|++.+. +.
T Consensus 174 ~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~ 245 (275)
T 1xnf_A 174 SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDN--TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA-----NN 245 (275)
T ss_dssp SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSH--HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TC
T ss_pred CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhccc--ccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CC
Confidence 233444444 6666777777888888888876532 32 45677788888888888888888885544 34
Q ss_pred CCcccHHHHHHHHHHcCChhHHHHHH
Q 008097 447 PGSGHYSPLIKALCEKGGFQSASMLL 472 (577)
Q Consensus 447 p~~~~~~~li~~~~~~g~~~~A~~~~ 472 (577)
|+. +.....++...|++++|.+.+
T Consensus 246 p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTT--CHHHHHHHHHHHHHHHC----
T ss_pred chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 522 333455677777887777665
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=1.3e-13 Score=123.63 Aligned_cols=198 Identities=14% Similarity=0.002 Sum_probs=161.0
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHH
Q 008097 268 SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSL 346 (577)
Q Consensus 268 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~ 346 (577)
+++...+..+...+.+.|++++|...|+...+.+|. +...+..+...+.+.|++++|+..+++..+..|+. ..+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ---DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 567788888999999999999999999999986433 67789999999999999999999999999988865 56777
Q ss_pred HHHHhhhc-----------CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008097 347 KILGFCVD-----------GNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFN 415 (577)
Q Consensus 347 l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 415 (577)
+...|.+. |++++|...|++..+.. +.+...|..+...|...|++++|+..|++..+.. .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 88888898 99999999999999863 2357889999999999999999999999999876 6788899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 416 TVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 416 ~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
.+..++...|++++|...|++.+. ..| +...+..+..++.+.|++++|.+.+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~-----~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALE-----QAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH-----HSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999996666 567 77889999999999999999999998864
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=4.4e-13 Score=123.55 Aligned_cols=225 Identities=13% Similarity=0.067 Sum_probs=160.9
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHH
Q 008097 148 VTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEM 227 (577)
Q Consensus 148 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~ 227 (577)
..|..+...+...|++++|+..|++..+.. .+..++..+..++...|++++|...++.+... -
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---------------~ 68 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQ---------------G 68 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---------------C
Confidence 356777788888999999999999988776 77888899999999999999999887765432 1
Q ss_pred HHcCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC
Q 008097 228 ERKGCLPN----VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEG 303 (577)
Q Consensus 228 ~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 303 (577)
... .|+ ...|..+...|...|++++|...|++.... .|+. ..+.+.|++++|...++.+....+
T Consensus 69 ~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~- 136 (258)
T 3uq3_A 69 REM--RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP- 136 (258)
T ss_dssp HHT--TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH-
T ss_pred ccc--ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc-
Confidence 111 112 567888888999999999999999998875 3443 345566778888888888876521
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 008097 304 SKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCL 382 (577)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 382 (577)
.+...+..+...+...|++++|...++++.+..|+ ...+..+...|.+.|++++|...|++..+.. +.+...|..+
T Consensus 137 --~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l 213 (258)
T 3uq3_A 137 --EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRK 213 (258)
T ss_dssp --HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred --chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHH
Confidence 24456777777777778888888777777765544 3445556666667777777777777766642 2345666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 008097 383 IHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m~~ 404 (577)
...|...|++++|.+.|++..+
T Consensus 214 ~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 214 ATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 6667777777777776666654
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=2.6e-12 Score=128.69 Aligned_cols=349 Identities=13% Similarity=0.017 Sum_probs=222.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCH---hHHHHHHHhccCCCceeHHHHHHHHHhcC--
Q 008097 87 LMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKV---GRARSLMSDMEEPNDVTFSILICAYCKEE-- 161 (577)
Q Consensus 87 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~-- 161 (577)
+...+.+.|++++|.+.|.+..+.| +...+..|..+|...|+. ++|...|++..+.+...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4556667888888888888888765 444555566667777877 88988888887777777777777555555
Q ss_pred ---ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhh
Q 008097 162 ---NLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDT 238 (577)
Q Consensus 162 ---~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 238 (577)
+.++|+..|++....|.. ..+..+...|...+..+.+.+ +...+......| +...
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~----------------a~~~~~~a~~~g---~~~a 143 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVN----------------AQQQISQWQAAG---YPEA 143 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCC----------------HHHHHHHHHHHT---CTTH
T ss_pred CCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHH----------------HHHHHHHHHHCC---CHHH
Confidence 678999999998886632 366667777766554433322 223344444333 4566
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC---ChHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGG---RIDDGLKILQLMEDSKEGSKGRISPYNSVL 315 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 315 (577)
+..+...|...+.++++........+.-...++..+..+...|.+.| +.++|.+.|+...+. + .++...+..+.
T Consensus 144 ~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~--g-~~~a~~~~~Lg 220 (452)
T 3e4b_A 144 GLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR--G-TVTAQRVDSVA 220 (452)
T ss_dssp HHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT--T-CSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC--C-CHHHHHHHHHH
Confidence 77777788877766555544333332212223347778888888888 888999999888876 3 22333346677
Q ss_pred HHHHhc----CCHHHHHHHHHHHhhcCCCceehHHHHHH-h--hhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 008097 316 YGLYRE----NQQDEALEYLKQMEKLFPRAVDRSLKILG-F--CVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ 388 (577)
Q Consensus 316 ~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 388 (577)
..|... +++++|...|++.. ..+...+..+... | ...+++++|...|++..+.| +...+..+...|.
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~- 294 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY- 294 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-
Confidence 777655 78999999999887 3344555556555 3 46889999999999999864 6778888888887
Q ss_pred cC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHH
Q 008097 389 EE-----RVREASELMKEMTGHGYLPIASTFNTVLSGLCR----QGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKAL 459 (577)
Q Consensus 389 ~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~ 459 (577)
.| ++++|++.|++.. .| +......+...|.. ..+.++|..+|++... . -+...+..|..+|
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~---~---g~~~A~~~Lg~~y 364 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR---N---GQNSADFAIAQLF 364 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT---T---TCTTHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh---h---ChHHHHHHHHHHH
Confidence 55 9999999999887 33 55566666666665 3489999999995444 2 2455667777777
Q ss_pred HH----cCChhHHHHHHHHHHHCC
Q 008097 460 CE----KGGFQSASMLLVQMVGKG 479 (577)
Q Consensus 460 ~~----~g~~~~A~~~~~~m~~~~ 479 (577)
.. ..++++|...++...+.|
T Consensus 365 ~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 365 SQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HhCCCCCCCHHHHHHHHHHHHHCC
Confidence 64 458889999999988766
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=1e-12 Score=122.31 Aligned_cols=246 Identities=11% Similarity=-0.014 Sum_probs=185.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCc--ccHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRI--SPYNS 313 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~ 313 (577)
...+......+...|++++|+..|++..+.. +.+...+..+...|...|++++|...++..... ...++. ..|..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK--VNATKAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT--SCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--cCchhHHHHHHHH
Confidence 3455667778888999999999999988763 334557888888999999999999999988874 222222 23788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 008097 314 VLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERV 392 (577)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 392 (577)
+...+...|++++|...|++..+..|+ ...+..+...|...|++++|...|++..+. .+.+...|..+...+...+++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999887664 456778888899999999999999998875 334567777777344445699
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHhhcccCCCCCCC------cccHHHHHHHHHHc
Q 008097 393 REASELMKEMTGHGYLPI-ASTFNTVLSGLCRQGN---VGTALKLVEEDMRGIGRGSLPG------SGHYSPLIKALCEK 462 (577)
Q Consensus 393 ~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~m~~~~~~~~p~------~~~~~~li~~~~~~ 462 (577)
++|++.|+++.+. .|+ ...+..+...+...|+ .++|...+++.+. ...-.|+ ...|..+...|.+.
T Consensus 159 ~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 159 VKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE--VCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH--HHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH--HHhcccccchHHHHHHHHHHHHHHHHc
Confidence 9999999999874 354 6677778888888888 7888888885555 1112243 25788899999999
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 008097 463 GGFQSASMLLVQMVGKGILPD-YLTWNSLL 491 (577)
Q Consensus 463 g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll 491 (577)
|++++|.+.+++..+ +.|+ ...+..+-
T Consensus 235 ~~~~~A~~~~~~al~--~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 235 RDKVKADAAWKNILA--LDPTNKKAIDGLK 262 (272)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHC
T ss_pred CCHHHHHHHHHHHHh--cCccHHHHHHHhh
Confidence 999999999999985 4565 44444443
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=2.3e-12 Score=119.96 Aligned_cols=244 Identities=12% Similarity=0.027 Sum_probs=185.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 008097 184 TITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMK 263 (577)
Q Consensus 184 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 263 (577)
.+......+...|++++|...+ ++..+... .+...|..+...|...|++++|+..|++..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~-------------------~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 64 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVF-------------------NKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYF 64 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHH-------------------HHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHH-------------------HHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4445556666677777666664 44444322 255689999999999999999999999998
Q ss_pred HCCCCcC--HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 008097 264 IDGISWN--FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA 341 (577)
Q Consensus 264 ~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 341 (577)
+.+..|+ ..+|..+...|...|++++|...|+...+..+. +..+|..+...|...|++++|...|++..+..|+.
T Consensus 65 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 141 (272)
T 3u4t_A 65 SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT---RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141 (272)
T ss_dssp TTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred hccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence 8432222 334888999999999999999999999987433 66789999999999999999999999999887765
Q ss_pred e-ehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------
Q 008097 342 V-DRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEER---VREASELMKEMTGHG-YLPI------ 410 (577)
Q Consensus 342 ~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------ 410 (577)
. .+..+...+...+++++|...|+++.+.. +.+...|..+...+...|+ +++|...+++..+.. -.|+
T Consensus 142 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 220 (272)
T 3u4t_A 142 PKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDEL 220 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHH
Confidence 4 44555524445569999999999999862 3347788888899998888 888999999887531 1233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHH
Q 008097 411 ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLI 456 (577)
Q Consensus 411 ~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li 456 (577)
...+..+...|...|++++|..+|++.+. +.| +...+..+.
T Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 221 IEANEYIAYYYTINRDKVKADAAWKNILA-----LDPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCccHHHHHHHhh
Confidence 24677888899999999999999997666 567 444444333
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=1.6e-12 Score=119.48 Aligned_cols=194 Identities=11% Similarity=-0.063 Sum_probs=111.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhh
Q 008097 275 DTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCV 353 (577)
Q Consensus 275 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~ 353 (577)
..+...+...|++++|.+.|+.+....+ .+...+..+...+...|++++|.+.++++.+..|+ ...+..+...|..
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEIDP---SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence 3333344444444444444444433311 12333444444444444444444444444443332 2333444455555
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008097 354 DGNVEDAKRCFDQMIEEGGVP-NVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALK 432 (577)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 432 (577)
.|++++|...|+++...+..| +...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 566666666666655421223 45567777777777888888888887777642 2245667777777788888888888
Q ss_pred HHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 433 LVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 433 ~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
++++.+. ..| +...+..+...+.+.|++++|.+.++++.+
T Consensus 197 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 197 YYDLFAQ-----GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHT-----TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH-----hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8874333 233 556677777778888888888888888774
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=1.5e-12 Score=121.41 Aligned_cols=247 Identities=13% Similarity=-0.048 Sum_probs=173.4
Q ss_pred hcCChHHHHHHHHHHHhCCCC---CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCC
Q 008097 159 KEENLVNALVLLEKSFSFGFV---PDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPN 235 (577)
Q Consensus 159 ~~~~~~~A~~~~~~m~~~g~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 235 (577)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...++.+.+ .. +.+
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-------------------~~-~~~ 76 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA-------------------IR-PDM 76 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HC-CCC
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH-------------------cC-CCc
Confidence 456778888888888765321 1355677777777777777777777554332 21 125
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVL 315 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 315 (577)
...|..+...|...|++++|...|++..+.. +.+..++..+...|.+.|++++|...|+.+.+..+ +.......+
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----~~~~~~~~~ 151 (275)
T 1xnf_A 77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP----NDPFRSLWL 151 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----CChHHHHHH
Confidence 6778888888888888888888888888753 33567788888888888899999888888887522 333344444
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCC---CCHhhHHHHHHHHHhcCCH
Q 008097 316 YGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGV---PNVVIYDCLIHAYCQEERV 392 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~ 392 (577)
..+...|++++|...+.+.....|+......++..+...++.++|...+.+....... .+..+|..+...|...|++
T Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 231 (275)
T 1xnf_A 152 YLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL 231 (275)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCH
Confidence 5556678889999888887776555555555777777888888888888887653111 1257888999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008097 393 REASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLV 434 (577)
Q Consensus 393 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 434 (577)
++|...|++..+. .|+. +.....++...|++++|+..+
T Consensus 232 ~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 232 DSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999874 4632 222344666778888877665
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=4.6e-12 Score=116.35 Aligned_cols=198 Identities=14% Similarity=-0.029 Sum_probs=161.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVL 315 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 315 (577)
...|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+.++.+....+ .+...+..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS---RNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc---CcHHHHHHHH
Confidence 4567778888889999999999999888763 44677888888889999999999999998887632 2567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHhh--cCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 008097 316 YGLYRENQQDEALEYLKQMEK--LFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERV 392 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 392 (577)
..+...|++++|.++++++.+ ..|+ ...+..+...|...|++++|...|+++.+.. +.+...|..+...|...|++
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCH
Confidence 889999999999999999887 5553 3456677788889999999999999988863 34578888999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 393 REASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 393 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
++|...++++.+.. +.+...+..+...+...|+.++|.+++++.+.
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999988743 34566788888888999999999999994444
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.51 E-value=2e-11 Score=113.71 Aligned_cols=224 Identities=10% Similarity=-0.078 Sum_probs=188.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCChHHHHHHHHHHHhccCCCCCCccc
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCS----GGRIDDGLKILQLMEDSKEGSKGRISP 310 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 310 (577)
+..++..+...|...|++++|+..|++..+. -+...+..+...|.. .+++++|...|++..+. + +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--N---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--C---CHHH
Confidence 5667778888899999999999999998873 355778888888888 99999999999998876 3 6677
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCceehHHHHHHhhh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 008097 311 YNSVLYGLYR----ENQQDEALEYLKQMEKLFPRAVDRSLKILGFCV----DGNVEDAKRCFDQMIEEGGVPNVVIYDCL 382 (577)
Q Consensus 311 ~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 382 (577)
+..+...|.. .+++++|+..|++..+.. +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 8888889998 999999999999988763 56667778888888 999999999999999864 66788888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcccCCCCCCCcccHHH
Q 008097 383 IHAYCQ----EERVREASELMKEMTGHGYLPIASTFNTVLSGLCR----QGNVGTALKLVEEDMRGIGRGSLPGSGHYSP 454 (577)
Q Consensus 383 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~ 454 (577)
...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|..+|++.+. ..| ...+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-----~~~-~~a~~~ 223 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE-----LEN-GGGCFN 223 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH-----TTC-HHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh-----CCC-HHHHHH
Confidence 888888 899999999999998864 45677788888888 9999999999996555 223 667888
Q ss_pred HHHHHHH----cCChhHHHHHHHHHHHCC
Q 008097 455 LIKALCE----KGGFQSASMLLVQMVGKG 479 (577)
Q Consensus 455 li~~~~~----~g~~~~A~~~~~~m~~~~ 479 (577)
+..+|.. .|++++|.+.+++..+.|
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8899998 999999999999998654
No 49
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.50 E-value=4.7e-10 Score=116.29 Aligned_cols=449 Identities=9% Similarity=-0.004 Sum_probs=291.4
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCC---HhHHHH
Q 008097 27 INDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNR---VGDGFK 102 (577)
Q Consensus 27 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~ 102 (577)
..+.+..|+.....++ .|...|..++..+.+. .++.++.+|+ .+... .+.....|...+..-.+.++ ++.+.+
T Consensus 48 ~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyE-raL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFD-KLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHH-HHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 4455666677666554 5899999999998887 9999999999 55443 34456678888888888888 999999
Q ss_pred HHHHHHhCCC-CCCcchHHHHHHHHHhcCCH--------hHHHHHHHhcc------CC-CceeHHHHHHHHH--------
Q 008097 103 LLHVMKSRGV-KPNSVIYNTLIHSLCKNGKV--------GRARSLMSDME------EP-NDVTFSILICAYC-------- 158 (577)
Q Consensus 103 ~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~-------- 158 (577)
+|++.+.... +|++..|...+....+.++. +...++|+... .+ +...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9999988641 37888888888766665553 33457777643 22 2346777776543
Q ss_pred -hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHH--cCCC--
Q 008097 159 -KEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMER--KGCL-- 233 (577)
Q Consensus 159 -~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~--~~~~-- 233 (577)
.+++.+.+..+|++.+......-..+|.....--...+ ...+..++.+. ...++.|+..+.++.. .++.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~-----~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGEL-----SAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH-----HHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh-----hHHHHHHHHHHHHHHHHHHhHhhc
Confidence 23457788899999885322212233332222111111 11233333221 1233444555544322 1111
Q ss_pred -------------C--C------hhhHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC
Q 008097 234 -------------P--N------VDTYNILISSYCETG-------VLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGG 285 (577)
Q Consensus 234 -------------p--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 285 (577)
| + ...|...+.---..+ ..+.+..+|++.... .+-+...|...+..+...|
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~ 357 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKN 357 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHS
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcC
Confidence 1 0 123444444322222 123456678887765 3457788888888888889
Q ss_pred ChHHHH-HHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcC-----------CC------------c
Q 008097 286 RIDDGL-KILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLF-----------PR------------A 341 (577)
Q Consensus 286 ~~~~a~-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------p~------------~ 341 (577)
+.++|. .+|+..... .+.+...|...+....+.|++++|.++|+++.+.. |. .
T Consensus 358 ~~~~a~r~il~rAi~~---~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 434 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQC---IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT 434 (679)
T ss_dssp CCTTHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence 999996 999998875 33355667788888889999999999999987631 42 1
Q ss_pred eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008097 342 VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQE-ERVREASELMKEMTGHGYLPIASTFNTVLSG 420 (577)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 420 (577)
..|...+....+.|.++.|..+|.+..+.-..+....|...+..-.+. ++.+.|.++|+...+. .+-+...+...+..
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHH
Confidence 246666666677899999999999998751111233343333333344 4589999999998874 33355567778887
Q ss_pred HHhcCCHHHHHHHHHHhhcccCCCCCC----CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008097 421 LCRQGNVGTALKLVEEDMRGIGRGSLP----GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQ 496 (577)
Q Consensus 421 ~~~~g~~~~a~~~~~~~m~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 496 (577)
....|+.+.|..+|++.+. ..| ....|...++.-.+.|+.+.+.++.+++.+. .|+......++.-|..
T Consensus 514 e~~~~~~~~AR~lferal~-----~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSID-----KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKYKV 586 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTT-----TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHTCB
T ss_pred HHhCCCHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHhcC
Confidence 8888999999999996555 223 3467888888899999999999999999864 4554455555555543
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.50 E-value=3.2e-12 Score=114.97 Aligned_cols=196 Identities=12% Similarity=0.012 Sum_probs=105.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHh
Q 008097 273 TYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGF 351 (577)
Q Consensus 273 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~ 351 (577)
.+..+...+...|++++|.+.++.+....+ .+...+..+...+...|++++|.+.++++.+..|+ ...+..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDP---KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCc---cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 333344444444444444444444443311 12333444444444444444444444444443332 23334444455
Q ss_pred hhc-CCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008097 352 CVD-GNVEDAKRCFDQMIEEGGVP-NVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGT 429 (577)
Q Consensus 352 ~~~-g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 429 (577)
... |++++|...|+++.+.+..| +...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 555 55555666665555421122 24566666777777777777777777776532 2235566666777777777777
Q ss_pred HHHHHHHhhcccCCCCC--CCcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 430 ALKLVEEDMRGIGRGSL--PGSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 430 a~~~~~~~m~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
|..++++.+. .. .+...+..+...+...|+.++|..+++.+.+
T Consensus 166 A~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQS-----RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHH-----HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----hCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7777774443 22 2455566666666777777777777777653
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=2.1e-12 Score=125.39 Aligned_cols=245 Identities=12% Similarity=0.055 Sum_probs=199.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC-hHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGR-IDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
...|+.+...+...|++++|+..|++.+... +-+...|..+...+...|+ +++|+..|+++...++. +...|..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~---~~~a~~~~ 172 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK---NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC---CHHHHHHH
Confidence 4567778888899999999999999998763 3467888999999999997 99999999999987443 67889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-cCCH
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ-EERV 392 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~ 392 (577)
..++...|++++|+..|+++.+..|+ ...|..+...+.+.|++++|+..|+++++.. +.+...|+.+..+|.. .|..
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999998775 4678888889999999999999999999863 3468899999999999 6665
Q ss_pred HHH-----HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcC
Q 008097 393 REA-----SELMKEMTGHGYLP-IASTFNTVLSGLCRQG--NVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKG 463 (577)
Q Consensus 393 ~~A-----~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g 463 (577)
++| ++.|++.+. +.| +...|..+...+...| +.++|...+. .+. ..| +...+..++++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~-~~~-----~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLL-DLQ-----PSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp SHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHH-HHT-----TTCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHH-Hhc-----cCCCCHHHHHHHHHHHHHHh
Confidence 777 588998887 346 4567888888888888 6899999888 443 345 6678889999999875
Q ss_pred ---------ChhHHHHHHHHH-HHCCCCCCH-HHHHHHHHHHH
Q 008097 464 ---------GFQSASMLLVQM-VGKGILPDY-LTWNSLLICLS 495 (577)
Q Consensus 464 ---------~~~~A~~~~~~m-~~~~~~p~~-~~~~~ll~~~~ 495 (577)
.+++|.++++++ .+ +.|.. ..|..+...+.
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 358999999998 53 55653 55766665553
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.49 E-value=6.9e-12 Score=125.62 Aligned_cols=374 Identities=10% Similarity=-0.000 Sum_probs=234.1
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CH---HHHHHHHHHHHhhcCCCCCHhhHHHHHHH
Q 008097 15 ITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DI---DLARAFYRKKMMASGVQGDDYTYAILMKG 90 (577)
Q Consensus 15 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~---~~a~~~~~~~m~~~~~~~~~~~~~~ll~~ 90 (577)
..+...+.+.|++++|++.|+...+.|. ...+..+-..|... +. ++|+..|+ ...+. ++..+..+...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~-~A~~~----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYR-AAADT----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC---------------------------------CHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHH-HHHhC----CHHHHHHHHHH
Confidence 3467778899999999999999987653 22333333344333 44 89999998 44332 55566666665
Q ss_pred HHhcC-----CHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHH---HHHHHhccC-CCceeHHHHHHHHHhcC
Q 008097 91 LCLTN-----RVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRA---RSLMSDMEE-PNDVTFSILICAYCKEE 161 (577)
Q Consensus 91 ~~~~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A---~~~~~~~~~-~~~~~~~~li~~~~~~~ 161 (577)
+...+ ++++|...|++..+.|. ...+..|..+|...+..+++ .+.+....+ .+...+..+...|...+
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQG 155 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHT
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 55544 78899999999999763 34778888888877665443 444444332 46778888888888888
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC---CHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhh
Q 008097 162 NLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVG---RVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDT 238 (577)
Q Consensus 162 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 238 (577)
.++++........+.-...++..+..+...|...| +.++|.+. |+...+.|. ++...
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~-------------------~~~aa~~g~-~~a~~ 215 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQ-------------------MEAGVSRGT-VTAQR 215 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHHHHHTTC-SCHHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHH-------------------HHHHHHCCC-HHHHH
Confidence 66655554333322222334447778888888777 55555555 455555543 24454
Q ss_pred HHHHHHHHHhc----CChhHHHHHHHHHHHCCCCcCHHHHHHHHHH-H--HcCCChHHHHHHHHHHHhccCCCCCCcccH
Q 008097 239 YNILISSYCET----GVLDSALDVFNDMKIDGISWNFVTYDTLIRG-L--CSGGRIDDGLKILQLMEDSKEGSKGRISPY 311 (577)
Q Consensus 239 ~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 311 (577)
+..+...|... +++++|+..|++.. . -+...+..+... | ...+++++|.+.|++..+. + +...+
T Consensus 216 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g---~~~A~ 286 (452)
T 3e4b_A 216 VDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--D---QPRAE 286 (452)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--T---CHHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--C---CHHHH
Confidence 46666777554 78999999999987 3 355666666666 4 4678999999999998876 4 66677
Q ss_pred HHHHHHHHhcC-----CHHHHHHHHHHHhhcCCCceehHHHHHHhhh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 008097 312 NSVLYGLYREN-----QQDEALEYLKQMEKLFPRAVDRSLKILGFCV----DGNVEDAKRCFDQMIEEGGVPNVVIYDCL 382 (577)
Q Consensus 312 ~~li~~~~~~g-----~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 382 (577)
..+...|. .| ++++|...|++.. ..+......+...|.. ..+.++|...|++..+.| +......+
T Consensus 287 ~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~L 360 (452)
T 3e4b_A 287 LLLGKLYY-EGKWVPADAKAAEAHFEKAV--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAI 360 (452)
T ss_dssp HHHHHHHH-HCSSSCCCHHHHHHHHHTTT--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHH
T ss_pred HHHHHHHH-cCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHH
Confidence 77887777 55 8999999998887 4445555666666655 348888999998888764 34556666
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 383 IHAYCQ----EERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 383 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
...|.. ..+..+|...|+...+.|. |+.......+......++..+|..+.+
T Consensus 361 g~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~ 416 (452)
T 3e4b_A 361 AQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQ 416 (452)
T ss_dssp HHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666664 4578888888888887762 333322222222223344556666665
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.49 E-value=9.1e-13 Score=120.27 Aligned_cols=199 Identities=12% Similarity=0.032 Sum_probs=103.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
....|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+.++.+....+ .+...+..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l 97 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS---SAATAYYGA 97 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---cchHHHHHH
Confidence 44556666667777777777777777776542 33566666677777777777777777777666522 144455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVRE 394 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (577)
...+...|++++|...++++.+..| .+...|..+...|...|++++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~----------------------------------~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGM----------------------------------ENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTC----------------------------------CSHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC----------------------------------CCHHHHHHHHHHHHHhccHHH
Confidence 5566656666655555555544333 234455555555556666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHH
Q 008097 395 ASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLV 473 (577)
Q Consensus 395 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 473 (577)
|++.++++.+.. +.+...+..+...+...|++++|...|++.+. ..| +...+..+..+|...|++++|.+.++
T Consensus 144 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 144 ALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTE-----QDPGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 666666555431 22344555555566666666666666653333 122 34555666666666666666666666
Q ss_pred HHHH
Q 008097 474 QMVG 477 (577)
Q Consensus 474 ~m~~ 477 (577)
++.+
T Consensus 218 ~~~~ 221 (243)
T 2q7f_A 218 KAID 221 (243)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=1.8e-12 Score=118.23 Aligned_cols=189 Identities=11% Similarity=0.011 Sum_probs=134.1
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 008097 307 RISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHA 385 (577)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 385 (577)
....|..+...+...|++++|...|+++.+..|+ ...+..+...|.+.|++++|...|+++.+.. +.+...|..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3444555566666666666666666666665443 3445556666777777788888888777652 3467889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCC
Q 008097 386 YCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGG 464 (577)
Q Consensus 386 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~ 464 (577)
|...|++++|++.++++.+.. +.+...+..+...+...|++++|..++++.+. ..| +...+..+...+.+.|+
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVE-----LNENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-----hCCccHHHHHHHHHHHHHcCC
Confidence 999999999999999998753 34677888899999999999999999996555 344 67889999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchHHHH
Q 008097 465 FQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWLLL 503 (577)
Q Consensus 465 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 503 (577)
+++|.+.++++.+. ...+..+|..+..++...|+.+.+
T Consensus 175 ~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 175 LDEALSQFAAVTEQ-DPGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp CHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHccCHHHH
Confidence 99999999999864 234577899999999999887644
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=1.3e-11 Score=111.05 Aligned_cols=199 Identities=12% Similarity=0.020 Sum_probs=164.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+...|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+.++.+....+ .+..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l 82 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP---DSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CChHHHHHH
Confidence 45678888889999999999999999988763 44677888899999999999999999999887632 256778889
Q ss_pred HHHHHhc-CCHHHHHHHHHHHhh--cCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008097 315 LYGLYRE-NQQDEALEYLKQMEK--LFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE 390 (577)
Q Consensus 315 i~~~~~~-g~~~~A~~~~~~~~~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (577)
...+... |++++|...++++.+ ..|+ ...+..+...|...|++++|...|+++.+.. +.+...|..+...|...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 9999999 999999999999988 3333 3556777888999999999999999998863 345788999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 391 RVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
++++|.+.++++.+..-..+...+..+...+...|+.+++..+++ .+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~ 209 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEA-QLQ 209 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH-HHH
Confidence 999999999999874311456677777778899999999999998 543
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.45 E-value=1e-10 Score=108.88 Aligned_cols=221 Identities=11% Similarity=-0.050 Sum_probs=117.9
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHHHhhhcCChhHHHHH
Q 008097 148 VTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCS----VGRVMDAVEILEESGEQGRLGKVKGGCRF 223 (577)
Q Consensus 148 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~g~~~~a~~~ 223 (577)
.++..+...|...|++++|+..|++..+. .+...+..+...+.. .+++++|...++.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~---------------- 67 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAK---------------- 67 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHH----------------
Confidence 34445555555556666666666655542 233444455555555 5555555444332
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCChHHHHHHHH
Q 008097 224 LKEMERKGCLPNVDTYNILISSYCE----TGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCS----GGRIDDGLKILQ 295 (577)
Q Consensus 224 ~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~ 295 (577)
..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|+
T Consensus 68 ---a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~ 138 (273)
T 1ouv_A 68 ---ACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFT 138 (273)
T ss_dssp ---HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred ---HHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 22221 44555555555665 666666666666666543 45555556666666 666666666666
Q ss_pred HHHhccCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCceehHHHHHHhhh----cCCHHHHHHHHHHH
Q 008097 296 LMEDSKEGSKGRISPYNSVLYGLYR----ENQQDEALEYLKQMEKLFPRAVDRSLKILGFCV----DGNVEDAKRCFDQM 367 (577)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 367 (577)
+..+. + +...+..+...|.. .+++++|...|++..+.. +...+..+...|.. .+++++|...|++.
T Consensus 139 ~a~~~--~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 212 (273)
T 1ouv_A 139 KACDL--N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-DSPGCFNAGNMYHHGEGATKNFKEALARYSKA 212 (273)
T ss_dssp HHHHT--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred HHHhc--C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 66554 2 33445555555555 555555555555554432 22333444444555 55555666666555
Q ss_pred HHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhC
Q 008097 368 IEEGGVPNVVIYDCLIHAYCQ----EERVREASELMKEMTGH 405 (577)
Q Consensus 368 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 405 (577)
.+.+ +...+..+...|.. .+++++|++.|++..+.
T Consensus 213 ~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 213 CELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 5532 24455555555555 56666666666665554
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.44 E-value=2.1e-11 Score=118.28 Aligned_cols=230 Identities=12% Similarity=0.079 Sum_probs=155.0
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC-HhHHHHHHHHHHHhhhcCChhHHHHHHHH
Q 008097 148 VTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGR-VMDAVEILEESGEQGRLGKVKGGCRFLKE 226 (577)
Q Consensus 148 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~g~~~~a~~~~~~ 226 (577)
..|+.+...+.+.|++++|+..|++.+... +-+...|..+..++...|+ +++|...++.+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~a------------------ 158 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAI------------------ 158 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHH------------------
Confidence 456777777778888888888888877653 2246677777777777775 77777665443
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC
Q 008097 227 MERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG 306 (577)
Q Consensus 227 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 306 (577)
...... +...|+.+...+...|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..++++.+.++.
T Consensus 159 -l~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~--- 232 (382)
T 2h6f_A 159 -IEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR--- 232 (382)
T ss_dssp -HHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT---
T ss_pred -HHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---
Confidence 332222 56778888888888888888888888887763 346777888888888888888888888888876433
Q ss_pred CcccHHHHHHHHHh-cCCHHHH-----HHHHHHHhhcCCCc-eehHHHHHHhhhcC--CHHHHHHHHHHHHHcCCCCCHh
Q 008097 307 RISPYNSVLYGLYR-ENQQDEA-----LEYLKQMEKLFPRA-VDRSLKILGFCVDG--NVEDAKRCFDQMIEEGGVPNVV 377 (577)
Q Consensus 307 ~~~~~~~li~~~~~-~g~~~~A-----~~~~~~~~~~~p~~-~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~ 377 (577)
+...|+.+..++.+ .|..++| +..+++.....|+. ..|..+...+.+.| ++++|...+.++ +. .+.+..
T Consensus 233 ~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~ 310 (382)
T 2h6f_A 233 NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPY 310 (382)
T ss_dssp CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHH
T ss_pred CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHH
Confidence 66777777777777 5554665 46677766665543 34555555566655 466676666666 22 233456
Q ss_pred hHHHHHHHHHhcC---------CHHHHHHHHHHH-Hh
Q 008097 378 IYDCLIHAYCQEE---------RVREASELMKEM-TG 404 (577)
Q Consensus 378 ~~~~li~~~~~~g---------~~~~A~~~~~~m-~~ 404 (577)
.+..+...|.+.| ..++|+++++++ .+
T Consensus 311 al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 311 LIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 6666677776653 246677777776 44
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.44 E-value=2.7e-09 Score=110.59 Aligned_cols=441 Identities=10% Similarity=0.016 Sum_probs=286.3
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-C---HHHHHHHHHHHHhhcCCCCCHhh
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-D---IDLARAFYRKKMMASGVQGDDYT 83 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~---~~~a~~~~~~~m~~~~~~~~~~~ 83 (577)
|-|..+|..++..+.+.+.++.+..+|+.+... .+.....|...+..-.+. + ++.+..+|++.+......|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 568889999999999999999999999999875 345788899988887777 7 99999999954443322478888
Q ss_pred HHHHHHHHHhcCCH--------hHHHHHHHHHHh-CCC-CCC-cchHHHHHHHHHh---------cCCHhHHHHHHHhcc
Q 008097 84 YAILMKGLCLTNRV--------GDGFKLLHVMKS-RGV-KPN-SVIYNTLIHSLCK---------NGKVGRARSLMSDME 143 (577)
Q Consensus 84 ~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~~ 143 (577)
|...+....+.++. +...++|+..+. .|. .++ ...|...+..... .++++.++++|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88888776665553 334577777654 365 454 4678888876543 345788999999987
Q ss_pred C-CCc---eeHHH---HHHHHH----------hcCChHHHHHHHHHHHhC--CCC---CCH-hhHHHHHHHHHhcC-CHh
Q 008097 144 E-PND---VTFSI---LICAYC----------KEENLVNALVLLEKSFSF--GFV---PDV-VTITKVLELLCSVG-RVM 199 (577)
Q Consensus 144 ~-~~~---~~~~~---li~~~~----------~~~~~~~A~~~~~~m~~~--g~~---~~~-~~~~~ll~~~~~~g-~~~ 199 (577)
. |.. ..|.. +...+. ....++.|...+.++... ++. |.. .+.. ....-..+ ...
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~ 299 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDV 299 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch--hccCCCCchhHH
Confidence 5 211 22322 111110 001222333344332211 111 000 0000 00000000 011
Q ss_pred HHHHHHHHHHHhhhcCC--------hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHH-HHHHHHHHCCCCcC
Q 008097 200 DAVEILEESGEQGRLGK--------VKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSAL-DVFNDMKIDGISWN 270 (577)
Q Consensus 200 ~a~~~~~~~~~~~~~g~--------~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~~~ 270 (577)
....++...+...+... .+....+|++....- +-+...|-..+.-+...|+.++|. .+|++.... .+.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 22333333333322211 123445677776642 236778888888888899999997 999998864 3556
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-------CCCCC------------cccHHHHHHHHHhcCCHHHHHHHH
Q 008097 271 FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE-------GSKGR------------ISPYNSVLYGLYRENQQDEALEYL 331 (577)
Q Consensus 271 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~ 331 (577)
...|...+...-+.|+++.|.++|+.+...-+ ...|+ ..+|...+....+.|..+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66677888888999999999999998876310 00121 235888888888899999999999
Q ss_pred HHHhhc-CC-CceehHHHHHHhhhc-CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008097 332 KQMEKL-FP-RAVDRSLKILGFCVD-GNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYL 408 (577)
Q Consensus 332 ~~~~~~-~p-~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 408 (577)
.++.+. .+ ....|...+..-.++ ++.+.|..+|+...+. .+.+...|...+......|+.+.|..+|++.+.....
T Consensus 458 ~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 458 GKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 999876 22 222333333333344 4599999999999987 4556778889999888999999999999999975422
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHH
Q 008097 409 P--IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKAL 459 (577)
Q Consensus 409 p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~ 459 (577)
| ....|...+.--...|+.+.+.++.++... ..|+......+++-|
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~-----~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE-----KFPEVNKLEEFTNKY 584 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH-----HSTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCcHHHHHHHHh
Confidence 2 234688888777899999999999995444 456655555555544
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=2.5e-12 Score=127.57 Aligned_cols=241 Identities=12% Similarity=-0.007 Sum_probs=164.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC---CCCCc
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKID----GI-SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEG---SKGRI 308 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~ 308 (577)
..|..+...|...|++++|...|++.... +. +....++..+...|...|++++|...+++....... .+...
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 166 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 46788888899999999999999887653 11 224466778888899999999999999887653111 11123
Q ss_pred ccHHHHHHHHHhcCC-----------------HHHHHHHHHHHhhcC---CC----ceehHHHHHHhhhcCCHHHHHHHH
Q 008097 309 SPYNSVLYGLYRENQ-----------------QDEALEYLKQMEKLF---PR----AVDRSLKILGFCVDGNVEDAKRCF 364 (577)
Q Consensus 309 ~~~~~li~~~~~~g~-----------------~~~A~~~~~~~~~~~---p~----~~~~~~l~~~~~~~g~~~~A~~~~ 364 (577)
.++..+...|...|+ +++|...+.+..+.. ++ ...+..+...|...|++++|...|
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 467778888888899 888888888765521 11 224556667788888888888888
Q ss_pred HHHHHcCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008097 365 DQMIEEGGV-PN----VVIYDCLIHAYCQEERVREASELMKEMTGHG----YL-PIASTFNTVLSGLCRQGNVGTALKLV 434 (577)
Q Consensus 365 ~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~-p~~~~~~~ll~~~~~~g~~~~a~~~~ 434 (577)
++..+.... ++ ..++..+...|...|++++|++.+++..+.. .. ....++..+...+...|++++|..++
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 887664100 11 2267777888888888888888888776421 00 01346677777888888888888888
Q ss_pred HHhhcccC-CCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 435 EEDMRGIG-RGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 435 ~~~m~~~~-~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
++.+.... .+..+ ....|..+..+|.+.|++++|.+.+++..+
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 75444100 00011 234677778888888888888888888763
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.43 E-value=2.4e-12 Score=127.38 Aligned_cols=271 Identities=10% Similarity=-0.000 Sum_probs=153.4
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHH
Q 008097 149 TFSILICAYCKEENLVNALVLLEKSFSFGFVPD----VVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFL 224 (577)
Q Consensus 149 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~ 224 (577)
.+......+...|++++|+..|++....... + ...+..+...+...|++++|...++.+... .
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------~ 77 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL------------A 77 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH------------H
Confidence 4455566777788888888888887765322 2 246777778888888888888887665432 1
Q ss_pred HHHHHcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CC-cCHHHHHHHHHHHHcCCC------------
Q 008097 225 KEMERKGCLP-NVDTYNILISSYCETGVLDSALDVFNDMKIDG----IS-WNFVTYDTLIRGLCSGGR------------ 286 (577)
Q Consensus 225 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~-~~~~~~~~ll~~~~~~g~------------ 286 (577)
.. .+..| ...++..+...|...|++++|...+++..+.. .+ ....++..+...|...|+
T Consensus 78 ~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 154 (406)
T 3sf4_A 78 RT---IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGE 154 (406)
T ss_dssp HH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CC
T ss_pred Hh---ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhh
Confidence 11 11111 24567778888899999999999988876531 01 113467777788888888
Q ss_pred --------hHHHHHHHHHHHhccCCC---CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCC---C----ceehHHHH
Q 008097 287 --------IDDGLKILQLMEDSKEGS---KGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFP---R----AVDRSLKI 348 (577)
Q Consensus 287 --------~~~a~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p---~----~~~~~~l~ 348 (577)
+++|...+.......... +....++..+...+...|++++|...+++..+..| + ...+..+.
T Consensus 155 ~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 234 (406)
T 3sf4_A 155 FPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 234 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 888887777654321010 00123456666667777777777777766654311 1 11334444
Q ss_pred HHhhhcCCHHHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHH
Q 008097 349 LGFCVDGNVEDAKRCFDQMIEEGGV-PN----VVIYDCLIHAYCQEERVREASELMKEMTGH----GYLPI-ASTFNTVL 418 (577)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll 418 (577)
..|...|++++|...|++....... ++ ..++..+...|...|++++|.+.+++..+. +-.+. ..++..+.
T Consensus 235 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 314 (406)
T 3sf4_A 235 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLG 314 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 4555555555555555554432000 01 234445555555555555555555554421 10010 22344444
Q ss_pred HHHHhcCCHHHHHHHHH
Q 008097 419 SGLCRQGNVGTALKLVE 435 (577)
Q Consensus 419 ~~~~~~g~~~~a~~~~~ 435 (577)
..|...|++++|..+++
T Consensus 315 ~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 315 NAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 45555555555555555
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=4.4e-12 Score=127.89 Aligned_cols=212 Identities=9% Similarity=-0.065 Sum_probs=173.3
Q ss_pred hhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCh-HHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 008097 252 LDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRI-DDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEY 330 (577)
Q Consensus 252 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (577)
+++++..+++..... +.+...+..+...|...|++ ++|.+.|++..+.++. +...|..+...|.+.|++++|...
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE---LVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 566677777665442 34677888888888899999 9999999988876433 567888888999999999999999
Q ss_pred HHHHhhcCCCceehHHHHHHhhhc---------CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc--------CCHH
Q 008097 331 LKQMEKLFPRAVDRSLKILGFCVD---------GNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQE--------ERVR 393 (577)
Q Consensus 331 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~ 393 (577)
|++..+..|+...+..+...|... |++++|...|++..+.. +.+...|..+..+|... |+++
T Consensus 160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 999998888876777778888888 99999999999998863 34678899999999988 9999
Q ss_pred HHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHH
Q 008097 394 EASELMKEMTGHGYLP----IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSA 468 (577)
Q Consensus 394 ~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 468 (577)
+|++.|++..+. .| +...+..+..+|...|++++|...|++.+. +.| +...+..+..++...|++++|
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----l~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA-----LDPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999874 45 677888999999999999999999996666 456 566788888999999999988
Q ss_pred HHHHHHH
Q 008097 469 SMLLVQM 475 (577)
Q Consensus 469 ~~~~~~m 475 (577)
.+.+.++
T Consensus 312 i~~~~~~ 318 (474)
T 4abn_A 312 LESKGKT 318 (474)
T ss_dssp HHHTTTC
T ss_pred HHHhccc
Confidence 8765544
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=6.6e-12 Score=124.59 Aligned_cols=272 Identities=13% Similarity=0.043 Sum_probs=168.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHH
Q 008097 153 LICAYCKEENLVNALVLLEKSFSFGFVPDV----VTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEME 228 (577)
Q Consensus 153 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~ 228 (577)
+...+...|++++|+..|+++...... +. ..+..+...+...|++++|...++.+... .....
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------~~~~~ 120 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL------------AKSMN 120 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------HHHTT
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------------HHHcc
Confidence 334455556666666666655554211 11 34555556666666666666665554332 11110
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CCcCHHHHHHHHHHHHcCCC-----------------
Q 008097 229 RKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKID----G-ISWNFVTYDTLIRGLCSGGR----------------- 286 (577)
Q Consensus 229 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~~~~~~~~~ll~~~~~~g~----------------- 286 (577)
........+..+...|...|++++|...|++.... + .+....++..+...|...|+
T Consensus 121 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 121 --DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred --CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 00112345666666777777777777777765542 1 11123456666667777777
Q ss_pred hHHHHHHHHHHHhccC--C-CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-------ceehHHHHHHhhhcCC
Q 008097 287 IDDGLKILQLMEDSKE--G-SKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-------AVDRSLKILGFCVDGN 356 (577)
Q Consensus 287 ~~~a~~~~~~~~~~~~--~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~ 356 (577)
+++|.+.+.+...... + .......+..+...+...|++++|...+++..+..+. ...+..+...|...|+
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence 7777777666543210 0 0111235666777778888888888888777664322 1245667777888888
Q ss_pred HHHHHHHHHHHHHcCC--C---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCC
Q 008097 357 VEDAKRCFDQMIEEGG--V---PNVVIYDCLIHAYCQEERVREASELMKEMTGH----GYLP-IASTFNTVLSGLCRQGN 426 (577)
Q Consensus 357 ~~~A~~~~~~~~~~~~--~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~ 426 (577)
+++|...|++...... . ....++..+...|...|++++|.+.+++..+. +..+ ...++..+...|...|+
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 358 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG 358 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc
Confidence 8888888888766411 0 11467888899999999999999999988742 1111 13467788889999999
Q ss_pred HHHHHHHHHHhhc
Q 008097 427 VGTALKLVEEDMR 439 (577)
Q Consensus 427 ~~~a~~~~~~~m~ 439 (577)
+++|..++++.+.
T Consensus 359 ~~~A~~~~~~al~ 371 (411)
T 4a1s_A 359 HERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999995554
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=1.2e-10 Score=110.32 Aligned_cols=216 Identities=7% Similarity=-0.031 Sum_probs=136.0
Q ss_pred hHHHHHHHHHHHCCCCcCHHHHHHHHHHHH-------cCCCh-------HHHHHHHHHHHh-ccCCCCCCcccHHHHHHH
Q 008097 253 DSALDVFNDMKIDGISWNFVTYDTLIRGLC-------SGGRI-------DDGLKILQLMED-SKEGSKGRISPYNSVLYG 317 (577)
Q Consensus 253 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~-~~~~~~~~~~~~~~li~~ 317 (577)
++|..+|++..... +.+...|..+...+. +.|++ ++|..+|++... ..+ .+...|..++..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p---~~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK---KNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc---ccHHHHHHHHHH
Confidence 56666777666542 335556666555554 34665 677777777765 221 244467777777
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCce--ehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH-hcCCHHH
Q 008097 318 LYRENQQDEALEYLKQMEKLFPRAV--DRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYC-QEERVRE 394 (577)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~ 394 (577)
+.+.|++++|..+|+++.+..|+.. .|..+...+.+.|++++|..+|++..+.. +++...|........ ..|++++
T Consensus 109 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777777666543 56666666777777777777777777642 223344443333222 2577777
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC--CcccHHHHHHHHHHcCChhHHHHH
Q 008097 395 ASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP--GSGHYSPLIKALCEKGGFQSASML 471 (577)
Q Consensus 395 A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~ 471 (577)
|.++|++..+. .| +...|..++..+.+.|++++|..+|++.+. ...+.| ....|..++..+.+.|++++|..+
T Consensus 188 A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 188 AFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT--SGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777653 23 455677777777777777777777775444 212344 345677777777777777777777
Q ss_pred HHHHHH
Q 008097 472 LVQMVG 477 (577)
Q Consensus 472 ~~~m~~ 477 (577)
++++.+
T Consensus 264 ~~~a~~ 269 (308)
T 2ond_A 264 EKRRFT 269 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777764
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=2.5e-11 Score=119.19 Aligned_cols=230 Identities=11% Similarity=-0.018 Sum_probs=175.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC----CcccHH
Q 008097 242 LISSYCETGVLDSALDVFNDMKID----GISW-NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG----RISPYN 312 (577)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 312 (577)
....+...|++++|...|++..+. +-++ ...++..+...|...|++++|...+.+..+..+.... ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455677899999999999998763 2122 3467888889999999999999999987764222111 124678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCC---Cc----eehHHHHHHhhhcCCHHHHHHHHHHHHHc----CC-CCCHhhHH
Q 008097 313 SVLYGLYRENQQDEALEYLKQMEKLFP---RA----VDRSLKILGFCVDGNVEDAKRCFDQMIEE----GG-VPNVVIYD 380 (577)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p---~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~ 380 (577)
.+...|...|++++|...|.+..+..+ +. ..+..+...|...|++++|...|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888999999999999999999876422 21 25677888899999999999999998873 23 33466788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHhhcccCCCCCC-CcccH
Q 008097 381 CLIHAYCQEERVREASELMKEMTGHG---YLPI-ASTFNTVLSGLCRQGN---VGTALKLVEEDMRGIGRGSLP-GSGHY 452 (577)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~m~~~~~~~~p-~~~~~ 452 (577)
.+...|...|++++|.+.+++..+.. -.|. ...+..+...+...|+ .++|..+++ ... ..| ....+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~-~~~-----~~~~~~~~~ 342 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE-SKM-----LYADLEDFA 342 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH-HTT-----CHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HCc-----CHHHHHHHH
Confidence 99999999999999999999887421 0122 2235667778888888 888888888 333 334 45678
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 453 SPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 453 ~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
..+...|...|++++|.+.+++..+
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999999998874
No 65
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.38 E-value=1.5e-11 Score=121.54 Aligned_cols=278 Identities=15% Similarity=0.058 Sum_probs=200.9
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChhHH
Q 008097 180 PDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPN----VDTYNILISSYCETGVLDSA 255 (577)
Q Consensus 180 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A 255 (577)
+....+......+...|++++|...++.+++ .... + ...|..+...|...|++++|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~-------------------~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A 66 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQ-------------------VGTE-DLKTLSAIYSQLGNAYFYLHDYAKA 66 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCCS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHh-------------------cCcc-cHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 3445566666777778888888777655433 2111 2 35678888999999999999
Q ss_pred HHHHHHHHHC----CCCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCC---CCcccHHHHHHHHHhcCC----
Q 008097 256 LDVFNDMKID----GISW-NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSK---GRISPYNSVLYGLYRENQ---- 323 (577)
Q Consensus 256 ~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~---- 323 (577)
...|++.... +..| ...++..+...|...|++++|...+.......+... ....++..+...|...|+
T Consensus 67 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 146 (406)
T 3sf4_A 67 LEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 146 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccc
Confidence 9999987542 2222 245677888899999999999999988765421111 013367888889999999
Q ss_pred ----------------HHHHHHHHHHHhhc---CCC----ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCC-CCC----
Q 008097 324 ----------------QDEALEYLKQMEKL---FPR----AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGG-VPN---- 375 (577)
Q Consensus 324 ----------------~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~---- 375 (577)
+++|...+.+..+. .++ ...+..+...|...|++++|...|++..+... .++
T Consensus 147 ~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 226 (406)
T 3sf4_A 147 PGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE 226 (406)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 99999999887653 122 23466677889999999999999999876410 112
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccc-CCCCCC-C
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTGH----GYLPI-ASTFNTVLSGLCRQGNVGTALKLVEEDMRGI-GRGSLP-G 448 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~-~~~~~p-~ 448 (577)
..+|..+...|...|++++|+..+++..+. +..+. ..++..+...+...|++++|..++++.+... ..+-.+ .
T Consensus 227 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 306 (406)
T 3sf4_A 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE 306 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 237888999999999999999999988742 11111 4567888899999999999999998555410 001111 2
Q ss_pred cccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 449 SGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 449 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
...+..+..+|.+.|++++|.+.+++..+
T Consensus 307 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 307 GRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56788899999999999999999998764
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=7.9e-12 Score=119.93 Aligned_cols=273 Identities=15% Similarity=0.029 Sum_probs=194.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHH
Q 008097 186 TKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPN----VDTYNILISSYCETGVLDSALDVFND 261 (577)
Q Consensus 186 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 261 (577)
......+...|++++|...++. ..+.... + ...+..+...|...|++++|...+++
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~-------------------al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 68 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEA-------------------AVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-------------------HHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHH-------------------HHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344556666666666666544 4443211 2 35678888999999999999999998
Q ss_pred HHHC----CCC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC---CcccHHHHHHHHHhcCC----------
Q 008097 262 MKID----GIS-WNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG---RISPYNSVLYGLYRENQ---------- 323 (577)
Q Consensus 262 m~~~----g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~---------- 323 (577)
.... +.. ....++..+...|...|++++|...+.......+.... ...++..+...+...|+
T Consensus 69 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (338)
T 3ro2_A 69 DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDT 148 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC--
T ss_pred HHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhh
Confidence 7542 212 23556788888999999999999999987654211110 12367788889999999
Q ss_pred ----------HHHHHHHHHHHhhc---CCC----ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCC-CCC----HhhHHH
Q 008097 324 ----------QDEALEYLKQMEKL---FPR----AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGG-VPN----VVIYDC 381 (577)
Q Consensus 324 ----------~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~ 381 (577)
+++|...+++.... .++ ...+..+...|...|++++|...|++..+... .++ ..++..
T Consensus 149 ~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (338)
T 3ro2_A 149 GEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 228 (338)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 99999999887653 111 23466677788999999999999998876410 011 337888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccC-CCCCC-CcccHHH
Q 008097 382 LIHAYCQEERVREASELMKEMTGH----GYLPI-ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIG-RGSLP-GSGHYSP 454 (577)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~-~~~~p-~~~~~~~ 454 (577)
+...|...|++++|.+.+++..+. +..+. ..++..+...+...|++++|..++++.+.... .+-.+ ....+..
T Consensus 229 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 308 (338)
T 3ro2_A 229 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 308 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 899999999999999999988642 11111 45677888899999999999999985544100 01111 2457888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHC
Q 008097 455 LIKALCEKGGFQSASMLLVQMVGK 478 (577)
Q Consensus 455 li~~~~~~g~~~~A~~~~~~m~~~ 478 (577)
+...|.+.|++++|.+.+++..+.
T Consensus 309 la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 309 LGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999998753
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.38 E-value=1.8e-10 Score=109.13 Aligned_cols=215 Identities=10% Similarity=-0.006 Sum_probs=167.3
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCCh-------hHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC
Q 008097 220 GCRFLKEMERKGCLPNVDTYNILISSYCE-------TGVL-------DSALDVFNDMKIDGISWNFVTYDTLIRGLCSGG 285 (577)
Q Consensus 220 a~~~~~~~~~~~~~p~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 285 (577)
|..+|++..... +-+...|..+...+.. .|++ ++|..+|++..+.-.+-+...|..++..+.+.|
T Consensus 35 a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~ 113 (308)
T 2ond_A 35 VMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 113 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 344455555532 2267788888877753 5886 899999999987312335668999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCCCCcc-cHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCce-ehHHHHHH-hhhcCCHHHHHH
Q 008097 286 RIDDGLKILQLMEDSKEGSKGRIS-PYNSVLYGLYRENQQDEALEYLKQMEKLFPRAV-DRSLKILG-FCVDGNVEDAKR 362 (577)
Q Consensus 286 ~~~~a~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~-~~~~g~~~~A~~ 362 (577)
++++|.++|+++.+..+. +.. .|..++..+.+.|++++|..+|++..+..|... .|...... +...|+.++|..
T Consensus 114 ~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 114 KYEKVHSIYNRLLAIEDI---DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp CHHHHHHHHHHHHTSSSS---CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhcccc---CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999975322 343 799999999999999999999999999766542 22222222 123699999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 363 CFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHG-YLPI--ASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 363 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
+|++..+. .+.+...|..++..+.+.|++++|..+|++..... +.|+ ...|..++......|+.++|..++++.+.
T Consensus 191 ~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999886 23468899999999999999999999999999863 4563 56788888888999999999999995555
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.37 E-value=2e-11 Score=117.06 Aligned_cols=274 Identities=11% Similarity=0.029 Sum_probs=194.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHH
Q 008097 150 FSILICAYCKEENLVNALVLLEKSFSFGFVPD----VVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLK 225 (577)
Q Consensus 150 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~ 225 (577)
+......+...|++++|+..|+++...... + ...+..+...+...|++++|.+.++.+... ..
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------~~ 74 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL------------AR 74 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------hh
Confidence 334456677788888888888888775322 2 356777788888888888888887765442 22
Q ss_pred HHHHcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CcC----HHHHHHHHHHHHcCCC-------------
Q 008097 226 EMERKGCLP-NVDTYNILISSYCETGVLDSALDVFNDMKIDGI-SWN----FVTYDTLIRGLCSGGR------------- 286 (577)
Q Consensus 226 ~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~ll~~~~~~g~------------- 286 (577)
.. +..| ....+..+...|...|++++|...+++..+... .++ ..++..+...|...|+
T Consensus 75 ~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3ro2_A 75 TI---GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEF 151 (338)
T ss_dssp HH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----C
T ss_pred cc---cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhh
Confidence 11 1111 245677888889999999999999988765310 112 3467778888888899
Q ss_pred -------hHHHHHHHHHHHhccC--C-CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCC---C----ceehHHHHH
Q 008097 287 -------IDDGLKILQLMEDSKE--G-SKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFP---R----AVDRSLKIL 349 (577)
Q Consensus 287 -------~~~a~~~~~~~~~~~~--~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p---~----~~~~~~l~~ 349 (577)
+++|.+.++....... + .......+..+...+...|++++|...+++..+..+ + ...+..+..
T Consensus 152 ~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 231 (338)
T 3ro2_A 152 PEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 231 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 8999888877653210 1 011234577788889999999999999998876422 1 225667778
Q ss_pred HhhhcCCHHHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 008097 350 GFCVDGNVEDAKRCFDQMIEEGG-VPN----VVIYDCLIHAYCQEERVREASELMKEMTGH----GYLP-IASTFNTVLS 419 (577)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~ 419 (577)
.|...|++++|...|++...... .++ ..++..+...|...|++++|...+++..+. +-.+ ...++..+..
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 311 (338)
T 3ro2_A 232 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGN 311 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 88999999999999998876411 011 557888899999999999999999988742 1111 1346778888
Q ss_pred HHHhcCCHHHHHHHHHHhhc
Q 008097 420 GLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 420 ~~~~~g~~~~a~~~~~~~m~ 439 (577)
.+...|++++|..++++.+.
T Consensus 312 ~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 312 AYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHH
Confidence 99999999999999996555
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.36 E-value=7.9e-11 Score=102.27 Aligned_cols=165 Identities=15% Similarity=0.093 Sum_probs=111.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+...|..+...|...|++++|+..|++..+.. +-+..++..+...|.+.|++++|...+.......+. +...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT---SAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch---hHHHHHHH
Confidence 56677777778888888888888888777653 335667777777778888888888877777665222 44556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVR 393 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (577)
...+...++++.|...+.+..+..|+ ...+..+...|.+.|++++|+..|++..+.. +.+..+|..+..+|.+.|+++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 66777777777777777777665554 3345555566666666666666666666642 234556666666666666666
Q ss_pred HHHHHHHHHHh
Q 008097 394 EASELMKEMTG 404 (577)
Q Consensus 394 ~A~~~~~~m~~ 404 (577)
+|++.|++.++
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66666666665
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.35 E-value=6.9e-11 Score=102.66 Aligned_cols=161 Identities=14% Similarity=0.041 Sum_probs=74.3
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 008097 310 PYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ 388 (577)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 388 (577)
.|..+...|.+.|++++|++.|++..+..|+. ..+..+...|.+.|++++|...+...... .+.+...+..+...+..
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-DTTSAEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHH
Confidence 34444444444444444444444444433322 22333334444444444444444444443 11233444444455555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhH
Q 008097 389 EERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQS 467 (577)
Q Consensus 389 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 467 (577)
.+++++|.+.+.+..... +-+...+..+...+.+.|++++|+..|++.+. +.| +...|..+..+|.+.|++++
T Consensus 86 ~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 86 IDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS-----IKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHH-----hcchhhhHHHHHHHHHHHCCCHHH
Confidence 555555555555554421 11334444555555555555555555553333 233 34455555555555555555
Q ss_pred HHHHHHHHHH
Q 008097 468 ASMLLVQMVG 477 (577)
Q Consensus 468 A~~~~~~m~~ 477 (577)
|.+.+++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555553
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=3.8e-12 Score=120.83 Aligned_cols=238 Identities=13% Similarity=0.076 Sum_probs=166.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcc-----C
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKID-------GISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSK-----E 302 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~ 302 (577)
+..++..+...|...|++++|..+|+++.+. ..+....++..+...|...|++++|...++...... .
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3567888889999999999999999998763 223455678888899999999999999998877541 1
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcC-----CC----ceehHHHHHHhhhcCCHHHHHHHHHHHHHc---
Q 008097 303 GSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLF-----PR----AVDRSLKILGFCVDGNVEDAKRCFDQMIEE--- 370 (577)
Q Consensus 303 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 370 (577)
..+....++..+...|...|++++|...++++.+.. ++ ...+..+...|...|++++|...|+++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 122234568888899999999999999999887641 21 234666778889999999999999998774
Q ss_pred ---CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHH-------HHHHHHHHHHhcCCHHHHHH
Q 008097 371 ---GGVP-NVVIYDCLIHAYCQEERVREASELMKEMTGH-------GYLPIAS-------TFNTVLSGLCRQGNVGTALK 432 (577)
Q Consensus 371 ---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~-------~~~~ll~~~~~~g~~~~a~~ 432 (577)
+..| ...++..+...|...|++++|.+.++++.+. ...|... .+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1123 3457888999999999999999999998752 1122111 12222333344555555556
Q ss_pred HHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 433 LVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 433 ~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
.+++... ..| ....+..+..+|.+.|++++|.+.+++..+
T Consensus 266 ~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKV-----DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCC-----CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6662221 234 667889999999999999999999998874
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=9.8e-12 Score=117.98 Aligned_cols=177 Identities=12% Similarity=0.022 Sum_probs=125.0
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHH
Q 008097 148 VTFSILICAYCKEENLVNALVLLEKSFSF-------GFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGG 220 (577)
Q Consensus 148 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a 220 (577)
.+|..+...+...|++++|+..|+++... .......++..+...+...|++++|...++.+...
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------- 98 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI--------- 98 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------
Confidence 34566666677777777777777766552 22234567777888888899999998887665432
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC------CC-CcCHHHHHHHHHHHHcCCChHHHHHH
Q 008097 221 CRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKID------GI-SWNFVTYDTLIRGLCSGGRIDDGLKI 293 (577)
Q Consensus 221 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~~~~~~~~~ll~~~~~~g~~~~a~~~ 293 (577)
+........+....++..+...|...|++++|...|++..+. +. +....++..+...|...|++++|.+.
T Consensus 99 ---~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 175 (311)
T 3nf1_A 99 ---REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY 175 (311)
T ss_dssp ---HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred ---HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333322211224567888999999999999999999998764 22 22455678888899999999999999
Q ss_pred HHHHHhcc-----CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008097 294 LQLMEDSK-----EGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK 336 (577)
Q Consensus 294 ~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (577)
++.+.... ...+....++..+...|...|++++|...++++.+
T Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 176 YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99886531 01111234577788888899999999998888765
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.29 E-value=9.6e-11 Score=118.07 Aligned_cols=219 Identities=14% Similarity=0.016 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH-hHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 008097 163 LVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRV-MDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNI 241 (577)
Q Consensus 163 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 241 (577)
+++++..+++..... +.+...+..+...+...|++ ++|.+.++.+++ .. +.+...|..
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~-------------------~~-p~~~~a~~~ 142 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK-------------------LE-PELVEAWNQ 142 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH-------------------HC-TTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHh-------------------hC-CCCHHHHHH
Confidence 344555555443322 23445555555555555555 555555433322 11 113555666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC---------CChHHHHHHHHHHHhccCCCCCCcccHH
Q 008097 242 LISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSG---------GRIDDGLKILQLMEDSKEGSKGRISPYN 312 (577)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 312 (577)
+...|...|++++|...|++..+. .|+...+..+...|... |++++|.+.|++..+..+. +...|.
T Consensus 143 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~ 217 (474)
T 4abn_A 143 LGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL---DGRSWY 217 (474)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC---CHHHHH
Confidence 666666666666666666666654 34555566666666666 6666666666655554222 334444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhh----cCCHHHHHHHHHHHHHcCCC--CCHhhHHHHHHHH
Q 008097 313 SVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCV----DGNVEDAKRCFDQMIEEGGV--PNVVIYDCLIHAY 386 (577)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~ 386 (577)
.+..+|... |.. .|++++|...|++..+.... .+...|..+..+|
T Consensus 218 ~lg~~~~~~-----------------------------~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~ 268 (474)
T 4abn_A 218 ILGNAYLSL-----------------------------YFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLH 268 (474)
T ss_dssp HHHHHHHHH-----------------------------HHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----------------------------HHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHH
Confidence 444444443 000 04555666666665553110 2566777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 387 CQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
...|++++|++.|++..+. .| +...+..+..++...|++++|...+. .+.
T Consensus 269 ~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~-~~~ 319 (474)
T 4abn_A 269 KYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKG-KTK 319 (474)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTT-TCC
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhc-ccc
Confidence 7778888888877777763 34 34456677777777777777777666 444
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.25 E-value=4.2e-10 Score=110.40 Aligned_cols=236 Identities=8% Similarity=-0.048 Sum_probs=135.5
Q ss_pred HHHHHHhcCCHhHHHHHHHhccC-----CC----ceeHHHHHHHHHhcCChHHHHHHHHHHHhCCC------CCCHhhHH
Q 008097 122 LIHSLCKNGKVGRARSLMSDMEE-----PN----DVTFSILICAYCKEENLVNALVLLEKSFSFGF------VPDVVTIT 186 (577)
Q Consensus 122 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~------~~~~~~~~ 186 (577)
....+...|++++|...|++..+ +| ..+|..+...|...|++++|+..+.+....-. .....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 33445556666666666666543 11 23456666666677777777776666543210 11134677
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 008097 187 KVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLP-NVDTYNILISSYCETGVLDSALDVFNDMKID 265 (577)
Q Consensus 187 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 265 (577)
.+...|...|++++|...++.+.+. +... +..+ ...++..+...|...|++++|+..|++..+.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~------------~~~~---~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSM------------AEAE---KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH------------HHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH------------HHHc---CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7778888888888888887665432 2211 1001 1246777888888889999999888887762
Q ss_pred ----CC-CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC--CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 008097 266 ----GI-SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEG--SKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLF 338 (577)
Q Consensus 266 ----g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 338 (577)
+. +....++..+...|.+.|++++|...+++....... .+.....+..+...+...|+.+.
T Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------ 321 (383)
T 3ulq_A 254 FEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEA------------ 321 (383)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHH------------
T ss_pred HHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH------------
Confidence 22 334566777788888888888888888776543100 00001112233333333333100
Q ss_pred CCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 339 PRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 339 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+++|..++++... .+.....+..+...|...|++++|.+.|++..+
T Consensus 322 ------------------~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 322 ------------------IQGFFDFLESKML--YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp ------------------HHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444444444411 111233556667777777777777777777653
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.23 E-value=6.2e-09 Score=101.56 Aligned_cols=270 Identities=10% Similarity=0.033 Sum_probs=166.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHh----hHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHc
Q 008097 155 CAYCKEENLVNALVLLEKSFSFGFVPDVV----TITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERK 230 (577)
Q Consensus 155 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 230 (577)
..+...|++++|...+++........+.. ++..+...+...|++++|...++..... . ...
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------~---~~~ 86 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM------------A---RQH 86 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------H---HHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH------------H---Hhc
Confidence 44556777777777777766543222222 3455556677778888887776654432 1 111
Q ss_pred CCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC--c-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Q 008097 231 GCL-PNVDTYNILISSYCETGVLDSALDVFNDMKID----GIS--W-NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE 302 (577)
Q Consensus 231 ~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 302 (577)
+.. ....++..+...+...|++++|...+++.... +.. | ...++..+...+...|++++|...++......+
T Consensus 87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 100 01223556677788889999998888887642 221 2 234556677788888999999998888776532
Q ss_pred CCCC--CcccHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCc-eehHH-----HHHHhhhcCCHHHHHHHHHHHHHcCC
Q 008097 303 GSKG--RISPYNSVLYGLYRENQQDEALEYLKQMEKLF--PRA-VDRSL-----KILGFCVDGNVEDAKRCFDQMIEEGG 372 (577)
Q Consensus 303 ~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--p~~-~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~ 372 (577)
...+ ....+..+...+...|++++|...+++..... ++. ..+.. .+..+...|++++|...+++......
T Consensus 167 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 246 (373)
T 1hz4_A 167 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF 246 (373)
T ss_dssp TSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC
T ss_pred ccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCC
Confidence 2211 12346667777888888888888888876531 111 11221 22336678888888888887765322
Q ss_pred CCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 373 VPN---VVIYDCLIHAYCQEERVREASELMKEMTG----HGYLPIAS-TFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 373 ~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
.++ ...+..+...+...|++++|...+++... .|..++.. .+..+..++...|+.++|...+++.+.
T Consensus 247 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 247 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 111 22456677778888888888888887653 22222222 455566677788888888888874443
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.23 E-value=7.8e-10 Score=108.20 Aligned_cols=231 Identities=10% Similarity=-0.027 Sum_probs=170.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC-Cc----CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC----CcccH
Q 008097 241 ILISSYCETGVLDSALDVFNDMKIDGI-SW----NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG----RISPY 311 (577)
Q Consensus 241 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ 311 (577)
.....+...|++++|+..|++..+.-. .+ ...++..+...|...|+++.|...+.+.....+.... ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556789999999999999875411 12 2456778888999999999999999887654211111 13457
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhc---CCC----ceehHHHHHHhhhcCCHHHHHHHHHHHHHc----CCCCCHhhHH
Q 008097 312 NSVLYGLYRENQQDEALEYLKQMEKL---FPR----AVDRSLKILGFCVDGNVEDAKRCFDQMIEE----GGVPNVVIYD 380 (577)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~ 380 (577)
+.+...|...|++++|.+.|.+..+. .++ ...+..+...|...|++++|...|++.... +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 78889999999999999999988763 122 234566778889999999999999998872 2233367788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHhhcccCCCCCC-CcccH
Q 008097 381 CLIHAYCQEERVREASELMKEMTGHGY---LPI-ASTFNTVLSGLCRQGN---VGTALKLVEEDMRGIGRGSLP-GSGHY 452 (577)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~m~~~~~~~~p-~~~~~ 452 (577)
.+...|.+.|++++|...+++..+..- .|. ...+..+...+...|+ +.+|..+++ ... ..| ....+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~-~~~-----~~~~~~~~~ 339 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE-KKN-----LHAYIEACA 339 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH-HTT-----CHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-hCC-----ChhHHHHHH
Confidence 899999999999999999999875311 232 3345556666677788 888888888 322 233 44567
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 453 SPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 453 ~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
..+...|...|++++|.+.+++..+
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7899999999999999999998863
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.20 E-value=3.8e-09 Score=103.07 Aligned_cols=205 Identities=16% Similarity=0.069 Sum_probs=142.3
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCC--C-ChhhHHHHHHHHHhcCChhHHHHHHH
Q 008097 184 TITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCL--P-NVDTYNILISSYCETGVLDSALDVFN 260 (577)
Q Consensus 184 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~ 260 (577)
++..+...+...|++++|...++.+... ....+.. | ....+..+...+...|++++|...++
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~---------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 159 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQL---------------INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 159 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3455667777888888888887665332 2222221 2 23456667788899999999999999
Q ss_pred HHHHCCCC----cCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHH-----HHHHHHhcCCHHHHHHHH
Q 008097 261 DMKIDGIS----WNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNS-----VLYGLYRENQQDEALEYL 331 (577)
Q Consensus 261 ~m~~~g~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~ 331 (577)
+....... ....++..+...+...|++++|...++.......... ....+.. .+..+...|++++|...+
T Consensus 160 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 238 (373)
T 1hz4_A 160 SGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK-YHSDWISNANKVRVIYWQMTGDKAAAANWL 238 (373)
T ss_dssp HHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-cchhHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88754211 1235677788889999999999999998875421111 1112222 234477899999999999
Q ss_pred HHHhhcCCCce-----ehHHHHHHhhhcCCHHHHHHHHHHHHHc----CCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 332 KQMEKLFPRAV-----DRSLKILGFCVDGNVEDAKRCFDQMIEE----GGVPNV-VIYDCLIHAYCQEERVREASELMKE 401 (577)
Q Consensus 332 ~~~~~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~ 401 (577)
++.....|... .+..+...+...|++++|...+++.... +..++. ..+..+..++...|+.++|...+++
T Consensus 239 ~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 239 RHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318 (373)
T ss_dssp HHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99877544321 2455667888999999999999988654 222223 2666778889999999999999998
Q ss_pred HHh
Q 008097 402 MTG 404 (577)
Q Consensus 402 m~~ 404 (577)
...
T Consensus 319 al~ 321 (373)
T 1hz4_A 319 ALK 321 (373)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=1.2e-09 Score=94.46 Aligned_cols=160 Identities=12% Similarity=0.050 Sum_probs=104.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 008097 311 YNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQE 389 (577)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 389 (577)
+..+...+...|++++|...++++.+..|+ ...+..+...|...|++++|...|+++.+. .+.+...|..+...|...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-APDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHh
Confidence 444455555556666666666555554432 233445555666666666666666666654 233566777777777778
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHH
Q 008097 390 ERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSA 468 (577)
Q Consensus 390 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 468 (577)
|++++|.+.++++.+.. +.+...+..+...+...|++++|..++++.+. ..| +...+..+...+...|++++|
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALG-----LRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh-----cCccchHHHHHHHHHHHHcCCHHHH
Confidence 88888888887777542 33566677777777788888888888875444 233 566777777888888888888
Q ss_pred HHHHHHHHH
Q 008097 469 SMLLVQMVG 477 (577)
Q Consensus 469 ~~~~~~m~~ 477 (577)
.+.+++..+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877764
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.18 E-value=4.9e-10 Score=117.57 Aligned_cols=160 Identities=14% Similarity=0.140 Sum_probs=101.9
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 008097 309 SPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYC 387 (577)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 387 (577)
..++.+...|.+.|++++|++.|++..+..|+. ..+..+...|.+.|++++|+..|++.++.. +-+...|+.+..+|.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 345555555555555555555555555554442 344555555666666666666666666542 124566777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCCh
Q 008097 388 QEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGF 465 (577)
Q Consensus 388 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~ 465 (577)
..|++++|++.|++.++. .| +...+..+..++...|++++|+..|++.+. +.| +...|..+..+|...|++
T Consensus 89 ~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~-----l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALK-----LKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCSCCHHHHHHHHHHHHHTTCC
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCChHHHhhhhhHHHhcccH
Confidence 777777777777777663 35 345677777777777777777777775555 456 456677777777777777
Q ss_pred hHHHHHHHHHH
Q 008097 466 QSASMLLVQMV 476 (577)
Q Consensus 466 ~~A~~~~~~m~ 476 (577)
++|.+.+++..
T Consensus 162 ~~A~~~~~kal 172 (723)
T 4gyw_A 162 TDYDERMKKLV 172 (723)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776665
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.15 E-value=2.3e-09 Score=96.61 Aligned_cols=203 Identities=9% Similarity=0.010 Sum_probs=150.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
|+..|......+...|++++|+..|++..+...+++...+..+..++...|++++|.+.|+.....++. +...|..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN---LANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc---hHHHHHHH
Confidence 567788888889999999999999999887754367778888888999999999999999998876333 56678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCce--------ehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC---HhhHHHHH
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRAV--------DRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN---VVIYDCLI 383 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li 383 (577)
...+...|++++|...+++..+..|+.. .+..+...+...|++++|...|++..+. .|+ ...|..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999999988877643 3556667788899999999999999874 454 56777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC-cccHHHH
Q 008097 384 HAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG-SGHYSPL 455 (577)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~-~~~~~~l 455 (577)
..|...| ...++++...+ ..+...+.... ....+.+++|..+|++.+. +.|+ ......+
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~-----l~p~~~~~~~~l 220 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT-----LSPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH-----HCTTCHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh-----cCCCCHHHHHHH
Confidence 7776544 34455555432 22334444333 3345668999999996666 5674 3444433
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.15 E-value=3.8e-09 Score=103.30 Aligned_cols=163 Identities=11% Similarity=-0.002 Sum_probs=106.4
Q ss_pred HHHHHhcCCHhHHHHHHHhccC-----CC----ceeHHHHHHHHHhcCChHHHHHHHHHHHhCC----C-CC-CHhhHHH
Q 008097 123 IHSLCKNGKVGRARSLMSDMEE-----PN----DVTFSILICAYCKEENLVNALVLLEKSFSFG----F-VP-DVVTITK 187 (577)
Q Consensus 123 i~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g----~-~~-~~~~~~~ 187 (577)
...+...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..... . .+ ...++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3345566667776666666543 22 2345666667777777777777776654321 0 11 2456777
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-
Q 008097 188 VLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLP-NVDTYNILISSYCETGVLDSALDVFNDMKID- 265 (577)
Q Consensus 188 ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 265 (577)
+...|...|++++|.+.+..+++. +.. .+..+ ...+++.+...|...|++++|...|++....
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~------------~~~---~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 252 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALEL------------AMD---IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS 252 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH------------HHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH------------HHH---cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 778888888888888887665442 211 11111 2346777888888899999999999887761
Q ss_pred ---CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 008097 266 ---GISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 266 ---g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
+.+....++..+...|.+.|++++|...+++....
T Consensus 253 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 253 REKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 22333566777888888888888888888887764
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.14 E-value=2.6e-09 Score=92.37 Aligned_cols=159 Identities=15% Similarity=0.068 Sum_probs=89.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHH
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYG 317 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 317 (577)
.|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+....+ .+...+..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~ 85 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP---DNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHH
Confidence 45555666667777777777777665442 33555666666666677777777777766665421 234445555555
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008097 318 LYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASE 397 (577)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 397 (577)
+...|++++|.+.++++.+..| .+...|..+...|...|++++|.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~----------------------------------~~~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP----------------------------------INFNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT----------------------------------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc----------------------------------HhHHHHHHHHHHHHHcCcHHHHHH
Confidence 5555555555555555544332 234445555555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 398 LMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 398 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
.++++.+.. +.+...+..+...+...|++++|..+++
T Consensus 132 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 132 SFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555432 2234445555555555555555555555
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.14 E-value=2.6e-09 Score=100.30 Aligned_cols=206 Identities=11% Similarity=0.022 Sum_probs=134.2
Q ss_pred ChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC--CCCC-CcccHHHHHHHHHhcCCHHHH
Q 008097 251 VLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE--GSKG-RISPYNSVLYGLYRENQQDEA 327 (577)
Q Consensus 251 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~-~~~~~~~li~~~~~~g~~~~A 327 (577)
++++|...|.+. ...|...|++++|...|.+...... +.++ ...+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366777776665 2345667777777777776654311 1111 134567777777777888888
Q ss_pred HHHHHHHhhcCCC-------ceehHHHHHHhhhc-CCHHHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHhcCCHHH
Q 008097 328 LEYLKQMEKLFPR-------AVDRSLKILGFCVD-GNVEDAKRCFDQMIEEGGV-PN----VVIYDCLIHAYCQEERVRE 394 (577)
Q Consensus 328 ~~~~~~~~~~~p~-------~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~ 394 (577)
+..+++..+..|. ...+..+...|... |++++|...|++..+.... .+ ..+|+.+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8777777664322 23456667778885 8999999888888764110 01 3568888999999999999
Q ss_pred HHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcc------cHHHHHHHHH--
Q 008097 395 ASELMKEMTGHGYLPIA------STFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSG------HYSPLIKALC-- 460 (577)
Q Consensus 395 A~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~------~~~~li~~~~-- 460 (577)
|+..|++..+....... ..+..+..++...|++++|...|++.+. +.|+.. .+..++..|.
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----l~p~~~~~~~~~~l~~l~~~~~~~ 251 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS-----EDPNFADSRESNFLKSLIDAVNEG 251 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC-----C---------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCCCcHHHHHHHHHHHHHHcC
Confidence 99999999874322111 1566777788899999999999995444 444321 2344555554
Q ss_pred HcCChhHHHHHHHHHH
Q 008097 461 EKGGFQSASMLLVQMV 476 (577)
Q Consensus 461 ~~g~~~~A~~~~~~m~ 476 (577)
..+++++|...++++.
T Consensus 252 ~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 252 DSEQLSEHCKEFDNFM 267 (292)
T ss_dssp CTTTHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHhccCC
Confidence 3466788888777763
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.13 E-value=9.5e-10 Score=102.42 Aligned_cols=144 Identities=10% Similarity=-0.007 Sum_probs=104.1
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 008097 181 DVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFN 260 (577)
Q Consensus 181 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 260 (577)
...++..+...+...|++++|...++.+... .........+....++..+...|...|++++|...|.
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 109 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAI------------REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCK 109 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------------HHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4567888888899999999999887765442 3333111112245678889999999999999999999
Q ss_pred HHHHC------C-CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcc-----CCCCCCcccHHHHHHHHHhcCCHHHHH
Q 008097 261 DMKID------G-ISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSK-----EGSKGRISPYNSVLYGLYRENQQDEAL 328 (577)
Q Consensus 261 ~m~~~------g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~ 328 (577)
+.... . .+....++..+...|...|++++|...+++..... +..+....++..+...|...|++++|.
T Consensus 110 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 189 (283)
T 3edt_B 110 RALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAE 189 (283)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 98764 1 12345678888889999999999999998876540 111113455777788888888888888
Q ss_pred HHHHHHhh
Q 008097 329 EYLKQMEK 336 (577)
Q Consensus 329 ~~~~~~~~ 336 (577)
..++++.+
T Consensus 190 ~~~~~~l~ 197 (283)
T 3edt_B 190 TLYKEILT 197 (283)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877765
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=6.4e-09 Score=97.55 Aligned_cols=191 Identities=12% Similarity=-0.001 Sum_probs=132.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC---CcccHHHH
Q 008097 243 ISSYCETGVLDSALDVFNDMKID----GISWN-FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG---RISPYNSV 314 (577)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l 314 (577)
...|...|++++|...|.+.... |-+++ ..+|..+...|.+.|++++|...+++.....+.... ...+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566677778777777766542 22222 456777788888888888888888776654211100 02357778
Q ss_pred HHHHHhc-CCHHHHHHHHHHHhhcCCC-------ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHh------hHH
Q 008097 315 LYGLYRE-NQQDEALEYLKQMEKLFPR-------AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVV------IYD 380 (577)
Q Consensus 315 i~~~~~~-g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~ 380 (577)
...|... |++++|+..|++..+..|+ ...+..+...|.+.|++++|...|++..+........ .|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 8888886 9999999999988875442 2346677888999999999999999999853222211 567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH--hcCCHHHHHHHHH
Q 008097 381 CLIHAYCQEERVREASELMKEMTGHGYLPIAS------TFNTVLSGLC--RQGNVGTALKLVE 435 (577)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~ll~~~~--~~g~~~~a~~~~~ 435 (577)
.+..++...|++++|+..|++..+ +.|+.. .+..++.+|. ..+++++|+..|+
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 788889999999999999999886 345422 3445566664 4567888988887
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.10 E-value=2.2e-09 Score=112.65 Aligned_cols=165 Identities=15% Similarity=0.074 Sum_probs=130.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+..+|+.|...|.+.|++++|+..|++..+.. +-+..++..+..+|.+.|++++|++.|++..+.++. +...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~---~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT---FADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Confidence 45678888888888999999999998888753 335678888888888889999999988888876433 56778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVR 393 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (577)
..+|.+.|++++|++.|++..+..|+. ..+..+...|.+.|++++|+..|++.++.. +-+...|..+...|...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 888888888888888888888877754 567777888888888888888888888752 224677888888888888888
Q ss_pred HHHHHHHHHHh
Q 008097 394 EASELMKEMTG 404 (577)
Q Consensus 394 ~A~~~~~~m~~ 404 (577)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888777654
No 87
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.09 E-value=5.6e-09 Score=94.01 Aligned_cols=202 Identities=10% Similarity=-0.029 Sum_probs=150.1
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHH
Q 008097 268 SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSL 346 (577)
Q Consensus 268 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~ 346 (577)
+.|+..+......+...|++++|...|+...+.. .+++...+..+..++...|++++|+..|++..+..|+. ..+..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHH
Confidence 3466788888899999999999999999998873 22466777778899999999999999999999987764 45777
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHcCCCCCH-------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHH
Q 008097 347 KILGFCVDGNVEDAKRCFDQMIEEGGVPNV-------VIYDCLIHAYCQEERVREASELMKEMTGHGYLPI---ASTFNT 416 (577)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ 416 (577)
+...|...|++++|...|++..+.. +.+. ..|..+...+...|++++|++.|++..+. .|+ ...+..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 8888999999999999999998852 2234 45888888889999999999999999884 576 345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 008097 417 VLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTW 487 (577)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 487 (577)
+...+... +..+++ .+. .. ...+...|.... ....+.+++|...+++..+ +.|+....
T Consensus 159 l~~~~~~~-----~~~~~~-~a~--~~-~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~ 216 (228)
T 4i17_A 159 LGVLFYNN-----GADVLR-KAT--PL-ASSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEI 216 (228)
T ss_dssp HHHHHHHH-----HHHHHH-HHG--GG-TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHHHHH-----HHHHHH-HHH--hc-ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHH
Confidence 66666543 444455 333 11 112333443333 4456778999999999985 46665433
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.09 E-value=8.6e-10 Score=102.74 Aligned_cols=129 Identities=13% Similarity=0.066 Sum_probs=69.6
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHHHHc------CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC
Q 008097 344 RSLKILGFCVDGNVEDAKRCFDQMIEE------GGVP-NVVIYDCLIHAYCQEERVREASELMKEMTGH-------GYLP 409 (577)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p 409 (577)
+..+...|...|++++|...|+++.+. ...| ...++..+...|...|++++|++.+++..+. ...|
T Consensus 130 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 209 (283)
T 3edt_B 130 LNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNG 209 (283)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcch
Confidence 344444555555555555555555543 1122 2456777778888888888888888777642 1122
Q ss_pred CHH-HHHHHHHHHHhcCC------HHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 410 IAS-TFNTVLSGLCRQGN------VGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 410 ~~~-~~~~ll~~~~~~g~------~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
... .+..+.......+. +.++...++ ... ...| ....+..+..+|...|++++|.+++++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 210 DNKPIWMHAEEREESKDKRRDSAPYGEYGSWYK-ACK----VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SCCCHHHHHHHHHHTTCCCCC-------------CCC----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH-hcC----CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 221 23333323332222 333333443 222 1233 566788888888888888888888888764
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.00 E-value=9.9e-09 Score=94.54 Aligned_cols=106 Identities=10% Similarity=0.032 Sum_probs=79.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWN---FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPY 311 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 311 (577)
+...+..+...+.+.|++++|...|+++.+.. +.+ ...+..+..+|.+.|++++|...|+.+.+..+..+.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45566667777888899999999998888753 223 56777788888888999999999988887644433334456
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHhhcCCCc
Q 008097 312 NSVLYGLYR--------ENQQDEALEYLKQMEKLFPRA 341 (577)
Q Consensus 312 ~~li~~~~~--------~g~~~~A~~~~~~~~~~~p~~ 341 (577)
..+..++.. .|++++|...|+++.+..|+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 130 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH 130 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc
Confidence 677777777 888888888888888877754
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.99 E-value=1.2e-08 Score=93.90 Aligned_cols=102 Identities=7% Similarity=0.044 Sum_probs=75.5
Q ss_pred cCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCce----eh
Q 008097 269 WNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAV----DR 344 (577)
Q Consensus 269 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~ 344 (577)
.+...+..+...+.+.|++++|...|+.+....+..+.....+..+..+|.+.|++++|...|++..+..|+.. .+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 35566667777788889999999999988876433222245677788888888999999999988888766432 34
Q ss_pred HHHHHHhhh--------cCCHHHHHHHHHHHHHc
Q 008097 345 SLKILGFCV--------DGNVEDAKRCFDQMIEE 370 (577)
Q Consensus 345 ~~l~~~~~~--------~g~~~~A~~~~~~~~~~ 370 (577)
..+...|.. .|++++|...|+++.+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 455566666 88888888888888775
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.94 E-value=1.4e-07 Score=86.87 Aligned_cols=65 Identities=11% Similarity=-0.004 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGI-SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.+.
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33334444555555555555555555443321 113344444555555555555555555555443
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.93 E-value=7.1e-08 Score=86.48 Aligned_cols=184 Identities=7% Similarity=-0.051 Sum_probs=110.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-c-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGIS-W-NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNS 313 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 313 (577)
...+..+...+.+.|++++|+..|+++.+.... | ....+..+..+|.+.|++++|+..|+.+.+..|....-...+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555566677778888888888887764211 1 13456667777888888888888888877763332111113333
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC
Q 008097 314 VLYGLYR------------------ENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN 375 (577)
Q Consensus 314 li~~~~~------------------~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 375 (577)
+..++.+ .|++++|...|+++.+..|+...... |......+... .
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~-------------a~~~l~~~~~~----~ 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD-------------ATKRLVFLKDR----L 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH-------------HHHHHHHHHHH----H
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH-------------HHHHHHHHHHH----H
Confidence 3344432 46677777777777776665432111 00000000000 0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIA----STFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
......+...|.+.|++++|+..|+++++. .|+. ..+..+..++.+.|+.++|...++ .+.
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~-~l~ 211 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAK-IIA 211 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH-HHH
Confidence 011234567788888888888888888863 3432 357777888888888888888888 544
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.90 E-value=1.2e-07 Score=87.19 Aligned_cols=218 Identities=14% Similarity=0.005 Sum_probs=144.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHh
Q 008097 241 ILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYR 320 (577)
Q Consensus 241 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 320 (577)
-+.++|...|+++... .-.|....+..+.. |...+ |...|++.... + .++..++..+..++..
T Consensus 50 ~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~-~~~~~----a~~~l~~l~~~--~-~~~~~~~~~la~i~~~ 112 (310)
T 3mv2_B 50 YKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQ-FLDTK----NIEELENLLKD--K-QNSPYELYLLATAQAI 112 (310)
T ss_dssp HHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHH-HHTTT----CCHHHHHTTTT--S-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccCC---------CCCHHHHHHHHHHH-Hhccc----HHHHHHHHHhc--C-CCCcHHHHHHHHHHHH
Confidence 3456777777766421 12344444444443 33322 66777766654 2 3344555677788888
Q ss_pred cCCHHHHHHHHHHHhhcCC---CceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCC-----CHhhHHHHHHH--HHhcC
Q 008097 321 ENQQDEALEYLKQMEKLFP---RAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVP-----NVVIYDCLIHA--YCQEE 390 (577)
Q Consensus 321 ~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~li~~--~~~~g 390 (577)
.|++++|++++.+.....| +...+...+..|.+.|+.+.|.+.+++|.+. .| +..+...+..+ ....|
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g 190 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATN 190 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhC
Confidence 9999999999988876654 3344566778888999999999999999874 45 24555666655 33334
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCC------CC-CcccHHHHHHHHHH
Q 008097 391 --RVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGS------LP-GSGHYSPLIKALCE 461 (577)
Q Consensus 391 --~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~------~p-~~~~~~~li~~~~~ 461 (577)
++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++ .+.+....+ .| ++.++..+|.+...
T Consensus 191 ~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~-~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~ 267 (310)
T 3mv2_B 191 KETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVE-LLLSDYYSVEQKENAVLYKPTFLANQITLALM 267 (310)
T ss_dssp CSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHH-HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHH-HHHHhcccccccccCCCCCHHHHHHHHHHHHH
Confidence 899999999998764 3664444455558889999999999998 544111010 24 67777677777777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH
Q 008097 462 KGGFQSASMLLVQMVGKGILPDY 484 (577)
Q Consensus 462 ~g~~~~A~~~~~~m~~~~~~p~~ 484 (577)
.|+ +|.+++.++.+ ..|+.
T Consensus 268 lgk--~a~~l~~qL~~--~~P~h 286 (310)
T 3mv2_B 268 QGL--DTEDLTNQLVK--LDHEH 286 (310)
T ss_dssp TTC--TTHHHHHHHHH--TTCCC
T ss_pred hCh--HHHHHHHHHHH--hCCCC
Confidence 786 88999999985 45664
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=4.6e-08 Score=79.21 Aligned_cols=126 Identities=14% Similarity=0.183 Sum_probs=79.4
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008097 345 SLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQ 424 (577)
Q Consensus 345 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 424 (577)
..+...|...|++++|..+|+++.+.. +.+...|..+...+...|++++|...++++...+ +.+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 334445555566666666666665542 2345566666777777777777777777776542 23455666666777777
Q ss_pred CCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 425 GNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 425 g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
|++++|..++++.+. ..| +...+..+..++.+.|++++|.+.++++.+
T Consensus 83 ~~~~~A~~~~~~~~~-----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALE-----LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 777777777773333 223 455666777777777777777777777653
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.89 E-value=4.7e-08 Score=86.45 Aligned_cols=136 Identities=12% Similarity=0.058 Sum_probs=57.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-
Q 008097 314 VLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEER- 391 (577)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~- 391 (577)
+..+|.+.|++++|...|++..+..|+ ...+..+...|...|++++|...|++.++.. +.+..+|..+...|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHH
Confidence 344444444444444444444444443 2233444444445555555555555554431 1234455555555444332
Q ss_pred -HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHH
Q 008097 392 -VREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIK 457 (577)
Q Consensus 392 -~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~ 457 (577)
.+.+...++.... ..|....+.....++...|++++|...|++.+. +.|+......+..
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~-----l~P~~~~~~~l~~ 198 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL-----RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT-----TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCHHHHHHHHH
Confidence 2233333333321 112222222233334445555555555554443 4455444444443
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.87 E-value=5.5e-08 Score=85.97 Aligned_cols=136 Identities=7% Similarity=-0.050 Sum_probs=85.8
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 008097 347 KILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQG 425 (577)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g 425 (577)
+...|.+.|++++|...|++..+.. +.+...|..+...|...|++++|+..|++.++. .| +...+..+...+...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 5666777788888888888877752 235677777888888888888888888887763 35 4556666666665554
Q ss_pred C--HHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008097 426 N--VGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLI 492 (577)
Q Consensus 426 ~--~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 492 (577)
. .+.+...++ ... ...|....+.....++...|++++|...+++.. .+.|+......|.+
T Consensus 137 ~~~~~~~~~~~~-~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al--~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 137 EQEKKKLETDYK-KLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI--LRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--TTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCHHHHHHHHH
Confidence 3 333444444 221 112222233445556666778888888888877 46777665555444
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.86 E-value=2.2e-07 Score=82.32 Aligned_cols=174 Identities=10% Similarity=-0.008 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC----ChHHHHHHH
Q 008097 219 GGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGG----RIDDGLKIL 294 (577)
Q Consensus 219 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g----~~~~a~~~~ 294 (577)
+|.+.|+...+.| +...+..+-..|...+++++|+..|++..+.| +...+..+...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455566666653 77888888888999999999999999998865 56777778787877 6 899999999
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCC---ceehHHHHHHhhh----cCCHHHHHHH
Q 008097 295 QLMEDSKEGSKGRISPYNSVLYGLYR----ENQQDEALEYLKQMEKLFPR---AVDRSLKILGFCV----DGNVEDAKRC 363 (577)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~ 363 (577)
+...+. + +...+..|...|.. .+++++|..+|++..+..|. ...+..+...|.. .+++++|...
T Consensus 77 ~~A~~~--g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVEA--G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHT--T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHC--C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 998765 4 56677888888877 78899999999988887764 5667777777777 7788888888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 008097 364 FDQMIEEGGVPNVVIYDCLIHAYCQE-E-----RVREASELMKEMTGHG 406 (577)
Q Consensus 364 ~~~~~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 406 (577)
|++..+. +.+...+..+...|... | +.++|+..|++..+.|
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8888875 23455677777777653 2 7888888888887766
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.85 E-value=1.3e-07 Score=84.79 Aligned_cols=184 Identities=12% Similarity=0.075 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCcee----hHH
Q 008097 271 FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVD----RSL 346 (577)
Q Consensus 271 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~ 346 (577)
...+..+...+.+.|++++|...|+.+....+..+.....+..+..++.+.|++++|+..|+++.+..|+... +..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445556677888899999999999988764332222346777888899999999999999999888776542 333
Q ss_pred HHHHhhh------------------cCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008097 347 KILGFCV------------------DGNVEDAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEERVREASELMKEMTGHGY 407 (577)
Q Consensus 347 l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 407 (577)
+...|.+ .|+.++|...|+++++. .|+ ...+.+....- .+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----------~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----------HHHHHHH----
Confidence 3333332 35566666666666653 222 22222111100 0000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC----cccHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 008097 408 LPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG----SGHYSPLIKALCEKGGFQSASMLLVQMVGKG 479 (577)
Q Consensus 408 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 479 (577)
.....+...+.+.|++++|...|++.+. ..|+ ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~-----~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLR-----DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHH-----HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0113456778899999999999996665 3453 3679999999999999999999999998653
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.84 E-value=1e-08 Score=85.32 Aligned_cols=116 Identities=8% Similarity=-0.001 Sum_probs=52.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 008097 353 VDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTAL 431 (577)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~ 431 (577)
..|++++|+..+...... .+.+...+-.+...|.+.|++++|++.|++.++. .| +..+|..+...+...|++++|.
T Consensus 9 ~~~~~e~ai~~~~~a~~~-~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS-PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS-HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcChHHHHHHHHHHhccc-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHHH
Confidence 334444444444444331 0112233444445555555555555555555542 23 3344555555555555555555
Q ss_pred HHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHH-HHHHH
Q 008097 432 KLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASML-LVQMV 476 (577)
Q Consensus 432 ~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~-~~~m~ 476 (577)
..|++.+. +.| +...|..+..+|.+.|++++|.+. +++..
T Consensus 86 ~~~~~al~-----~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 86 ECYRRSVE-----LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp HHHHHHHH-----HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred HHHHHHHH-----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 55553333 334 344455555555555555444332 34444
No 100
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.84 E-value=1.9e-06 Score=86.65 Aligned_cols=116 Identities=11% Similarity=0.054 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHhhcccCCCCCCCcccHHHH
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCR-QGNVGTALKLVEEDMRGIGRGSLPGSGHYSPL 455 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~l 455 (577)
..|...+..+.+.+..+.|..+|++. ... .++...|......-.+ .++.+.|..+|+..+. ..+- ++..+...
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~--~~~~--~~~~~~~y 360 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL--KHPD--STLLKEEF 360 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH--HCTT--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH--HCCC--CHHHHHHH
Confidence 45777777777778888888898888 321 1233444322222222 3368889999986665 2211 34456777
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchHHHH
Q 008097 456 IKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWLLL 503 (577)
Q Consensus 456 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 503 (577)
++.....|+.+.|..++++.. .....|...+.--..+|+.+-.
T Consensus 361 id~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~ 403 (493)
T 2uy1_A 361 FLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELF 403 (493)
T ss_dssp HHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHH
Confidence 888888888888888888872 2466788888777777776544
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.84 E-value=9.9e-08 Score=77.18 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
..|..+...|...|++++|.+.++++.
T Consensus 104 ~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 104 EAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.82 E-value=4.7e-07 Score=85.45 Aligned_cols=164 Identities=10% Similarity=0.032 Sum_probs=88.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH
Q 008097 244 SSYCETGVLDSALDVFNDMKID----GISW-NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL 318 (577)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 318 (577)
..|...|++++|...|.+.... +-.+ -..+|..+...|.+.|++++|...|++.....
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~----------------- 106 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY----------------- 106 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-----------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-----------------
Confidence 3455666666666666655432 1010 12345556666666666666666666554320
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHhcCCHH
Q 008097 319 YRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEE----GGVP-NVVIYDCLIHAYCQEERVR 393 (577)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~ 393 (577)
...|+...+. ..+..+...|.. |++++|+..|++.... +..+ ...+++.+...|.+.|+++
T Consensus 107 ~~~g~~~~~a-------------~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 107 VENGTPDTAA-------------MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp HTTTCHHHHH-------------HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCHHHHH-------------HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 1111111111 112223333444 5555555555554432 0000 1356777788888888888
Q ss_pred HHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 008097 394 EASELMKEMTG----HGYLPIA-STFNTVLSGLCRQGNVGTALKLVEEDM 438 (577)
Q Consensus 394 ~A~~~~~~m~~----~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~m 438 (577)
+|+..|++..+ .+..++. ..+..+...+...|++++|...|++.+
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888888764 2211111 245566666777788888888888544
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.82 E-value=7.4e-08 Score=89.93 Aligned_cols=162 Identities=14% Similarity=-0.018 Sum_probs=92.6
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHH
Q 008097 268 SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLK 347 (577)
Q Consensus 268 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l 347 (577)
+.+...+..+...+.+.|++++|...|+.....+++ +...+..+...+.+.|++++|...++++....|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ---NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc---chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 334455556666677777777777777777665333 45566666677777777777777777666655543322211
Q ss_pred H-HHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh
Q 008097 348 I-LGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPI---ASTFNTVLSGLCR 423 (577)
Q Consensus 348 ~-~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~ 423 (577)
. ..+...+..+.|...|++..... +.+...+..+...|...|++++|++.|.++.+. .|+ ...+..++..+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHH
Confidence 1 12444455555566665555542 234555556666666666666666666666543 232 3345555555666
Q ss_pred cCCHHHHHHHHH
Q 008097 424 QGNVGTALKLVE 435 (577)
Q Consensus 424 ~g~~~~a~~~~~ 435 (577)
.|+.++|...++
T Consensus 268 ~g~~~~a~~~~r 279 (287)
T 3qou_A 268 LGTGDALASXYR 279 (287)
T ss_dssp HCTTCHHHHHHH
T ss_pred cCCCCcHHHHHH
Confidence 666666555555
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.81 E-value=5.6e-08 Score=102.48 Aligned_cols=171 Identities=9% Similarity=-0.026 Sum_probs=134.0
Q ss_pred HcCCChHHHHHHHHHHH--------hccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhh
Q 008097 282 CSGGRIDDGLKILQLME--------DSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFC 352 (577)
Q Consensus 282 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~ 352 (577)
...|++++|.+.++... .. .+.+...+..+...+.+.|++++|+..|+++.+..|+. ..+..+...|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD---FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C---CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc---cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 67889999999999887 33 23356678888888999999999999999998876654 56777788888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 008097 353 VDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTAL 431 (577)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~ 431 (577)
..|++++|...|++..+.. +.+...|..+..+|.+.|++++ ++.|++..+. .| +...+..+..++.+.|++++|.
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998863 2357788889999999999999 9999998874 35 5567888888999999999999
Q ss_pred HHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCC
Q 008097 432 KLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGG 464 (577)
Q Consensus 432 ~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~ 464 (577)
..|++.+. +.| +...|..+..++...|+
T Consensus 555 ~~~~~al~-----l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPP-----TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCT-----TSTTHHHHHHHHHHHTC----
T ss_pred HHHHhhcc-----cCcccHHHHHHHHHHHHccCC
Confidence 99994443 567 45677777777766554
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.80 E-value=4.9e-06 Score=83.64 Aligned_cols=371 Identities=9% Similarity=-0.063 Sum_probs=185.0
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--CHHHHHHHHHHHHhhcCCCC-CHhh
Q 008097 7 SPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE--DIDLARAFYRKKMMASGVQG-DDYT 83 (577)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~a~~~~~~~m~~~~~~~-~~~~ 83 (577)
+..-..+|...+..+-. |+++.+..+|++.... .|++..|...+....+. ..+....+|+..+...|..| +...
T Consensus 11 i~~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~i 87 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGL 87 (493)
T ss_dssp -CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHH
T ss_pred hHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHH
Confidence 34445678888888766 8899999999999873 47999999988877665 34567778885555556444 5667
Q ss_pred HHHHHHHHH----hcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHh---cCCHhHHHHHHHhccCCCceeHHHHHHH
Q 008097 84 YAILMKGLC----LTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCK---NGKVGRARSLMSDMEEPNDVTFSILICA 156 (577)
Q Consensus 84 ~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~li~~ 156 (577)
|...+..+. ..++++.+.++|+..++.. +. .+..+-..|.. ......+.++..+..
T Consensus 88 W~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P--~~--~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~------------- 150 (493)
T 2uy1_A 88 YKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP--MG--SLSELWKDFENFELELNKITGKKIVGDTL------------- 150 (493)
T ss_dssp HHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC--CT--THHHHHHHHHHHHHHHCHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh--hh--hHHHHHHHHHHHHHHhccccHHHHHHHHh-------------
Confidence 777776543 3467888999999998742 21 11222222221 111112222221110
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc--CC-----HhHHHHHHHHHHHhhhcCChhHHHHHHHHHHH
Q 008097 157 YCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSV--GR-----VMDAVEILEESGEQGRLGKVKGGCRFLKEMER 229 (577)
Q Consensus 157 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~--g~-----~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~ 229 (577)
..+..|...++.+...-...+...|...+.--... +- ...+..+|+ +...
T Consensus 151 ----~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye-------------------~al~ 207 (493)
T 2uy1_A 151 ----PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHN-------------------YILD 207 (493)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH-------------------HHHH
T ss_pred ----HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHH-------------------HHHH
Confidence 01112222222211100000112232222221111 00 112222322 2222
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcc---C----
Q 008097 230 KGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSK---E---- 302 (577)
Q Consensus 230 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~---- 302 (577)
.. +.+...|...+.-+.+.|+++.|..+|++.... +.+...+.. |+...+.++. ++.+...- .
T Consensus 208 ~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~ 277 (493)
T 2uy1_A 208 SF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESA 277 (493)
T ss_dssp HT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC-------
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchh
Confidence 11 113444555555555556666666666665554 222222211 1111111111 11111100 0
Q ss_pred C---CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHH---HHhhh-cCCHHHHHHHHHHHHHcCCCCC
Q 008097 303 G---SKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKI---LGFCV-DGNVEDAKRCFDQMIEEGGVPN 375 (577)
Q Consensus 303 ~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~---~~~~~-~g~~~~A~~~~~~~~~~~~~p~ 375 (577)
+ .......|...+....+.+..+.|..+|+++ + .|. .++...+ ..-.. .++.+.|..+|+...+. .+.+
T Consensus 278 ~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~-~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~ 353 (493)
T 2uy1_A 278 EKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEG-VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDS 353 (493)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC-CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTC
T ss_pred hhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC-CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCC
Confidence 0 0001234555566666666777777777777 3 222 1222211 11112 23577888888877775 2223
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
...|...++.....|+.+.|..+|+++. .....|...+.-=...|+.+.+..++++.+.
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4556666776777788888888888762 2455666666655667888888777775554
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.80 E-value=8.3e-08 Score=101.17 Aligned_cols=181 Identities=14% Similarity=0.046 Sum_probs=147.7
Q ss_pred HhcCChhHHHHHHHHHH--------HCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH
Q 008097 247 CETGVLDSALDVFNDMK--------IDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL 318 (577)
Q Consensus 247 ~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 318 (577)
...|++++|+..|++.. +. .+.+...+..+...|.+.|++++|.+.|+.+.+.++. +...|..+..++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW---RWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC---CHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc---hHHHHHHHHHHH
Confidence 78899999999999988 33 2445678888899999999999999999999987443 677899999999
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008097 319 YRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASE 397 (577)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 397 (577)
.+.|++++|.+.|+++.+..|+. ..+..+...|.+.|++++ ...|++..+.+ +.+...|..+..+|.+.|++++|++
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999988754 567888889999999999 99999999863 3467889999999999999999999
Q ss_pred HHHHHHhCCCCCCH-HHHHHHHHHHHhcCC--------HHHHHHHHH
Q 008097 398 LMKEMTGHGYLPIA-STFNTVLSGLCRQGN--------VGTALKLVE 435 (577)
Q Consensus 398 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~--------~~~a~~~~~ 435 (577)
.|++..+ +.|+. ..+..+..++...|. +++|.+.+.
T Consensus 556 ~~~~al~--l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~ 600 (681)
T 2pzi_A 556 TLDEVPP--TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVE 600 (681)
T ss_dssp HHHTSCT--TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHH
T ss_pred HHHhhcc--cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHh
Confidence 9999987 45764 456677777655444 555555555
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.79 E-value=3.2e-08 Score=82.30 Aligned_cols=143 Identities=13% Similarity=0.049 Sum_probs=115.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 008097 314 VLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERV 392 (577)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 392 (577)
|...+...|++++|++.+.......|+ ...+..+...|.+.|++++|...|++.++.. +.+..+|..+..+|.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 455667788999999999998876664 4556778889999999999999999999863 34688999999999999999
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHhhcccCCCCCC-CcccHHHHHHHHHHcCC
Q 008097 393 REASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKL-VEEDMRGIGRGSLP-GSGHYSPLIKALCEKGG 464 (577)
Q Consensus 393 ~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~ 464 (577)
++|+..|++..+. .| +...+..+...|.+.|+.++|.+. +++.+. +.| ++..|.....++.+.|+
T Consensus 82 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~-----l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK-----LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH-----HSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-----hCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999984 56 567888999999999999876654 575666 677 67778877777777764
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.77 E-value=3.7e-06 Score=78.18 Aligned_cols=233 Identities=12% Similarity=0.020 Sum_probs=168.6
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH----Hhc--
Q 008097 250 GVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGG--RIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL----YRE-- 321 (577)
Q Consensus 250 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~-- 321 (577)
...++|+.++..++... +-+...|+.--..+...| +++++.+.++.+...++. +..+|+.-...+ ...
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk---~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK---NYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT---CCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc---cHHHHHHHHHHHHHHHHhccc
Confidence 33468888888888763 224455676666777777 899999999888876433 556676555444 444
Q ss_pred -CCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHH--HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC------
Q 008097 322 -NQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVE--DAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEER------ 391 (577)
Q Consensus 322 -g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------ 391 (577)
+++++++++++++.+..|. ...|+.-.....+.|.++ ++++.++++++..+ .|...|+.-...+...|.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhh
Confidence 7888999999999887664 456777666677778877 99999999998743 588889888777777776
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHH
Q 008097 392 VREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGT-ALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASM 470 (577)
Q Consensus 392 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 470 (577)
++++++.+++++... +-|...|+..-..+.+.|+..+ ...+.+ .+...+..-..++..+..++++|.+.|+.++|.+
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSL-QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHH-TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHH-HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 899999999999743 2367778888888888888555 445666 4441110112366788999999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHH
Q 008097 471 LLVQMVGKGILPD-YLTWNSL 490 (577)
Q Consensus 471 ~~~~m~~~~~~p~-~~~~~~l 490 (577)
+++.+.++ +.|- ...|+-.
T Consensus 280 ~~~~l~~~-~Dpir~~yW~~~ 299 (306)
T 3dra_A 280 VYDLLKSK-YNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHT-TCGGGHHHHHHH
T ss_pred HHHHHHhc-cChHHHHHHHHH
Confidence 99999753 3443 3445543
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.76 E-value=6.1e-07 Score=79.41 Aligned_cols=160 Identities=8% Similarity=-0.124 Sum_probs=98.1
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcC----CHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 008097 310 PYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDG----NVEDAKRCFDQMIEEGGVPNVVIYDCLIHA 385 (577)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 385 (577)
.+..+...|...+++++|...|++..+.. +...+..+...|.. + +.++|...|++..+. -+...+..+...
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~---g~~~a~~~Lg~~ 94 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA---GSKSGEIVLARV 94 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHH
Confidence 33333333434444444444444433321 22223333344444 4 667777777777664 356677777777
Q ss_pred HHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcccCCCCCCCcccHHHHH
Q 008097 386 YCQ----EERVREASELMKEMTGHGYL-PIASTFNTVLSGLCR----QGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLI 456 (577)
Q Consensus 386 ~~~----~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li 456 (577)
|.. .+++++|+++|++..+.|.. .+...+..|...|.. .++.++|..+|++... ..++...+..|.
T Consensus 95 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-----~~~~~~a~~~Lg 169 (212)
T 3rjv_A 95 LVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS-----LSRTGYAEYWAG 169 (212)
T ss_dssp HTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-----TSCTTHHHHHHH
T ss_pred HHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-----cCCCHHHHHHHH
Confidence 766 77888888888888876521 015567777777777 7788888888885555 223555677777
Q ss_pred HHHHHc-C-----ChhHHHHHHHHHHHCC
Q 008097 457 KALCEK-G-----GFQSASMLLVQMVGKG 479 (577)
Q Consensus 457 ~~~~~~-g-----~~~~A~~~~~~m~~~~ 479 (577)
.+|... | ++++|...+++..+.|
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777654 3 7888888888887766
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.76 E-value=7.1e-08 Score=82.69 Aligned_cols=24 Identities=8% Similarity=0.014 Sum_probs=10.7
Q ss_pred cHHHHHHHHHHcCChhHHHHHHHH
Q 008097 451 HYSPLIKALCEKGGFQSASMLLVQ 474 (577)
Q Consensus 451 ~~~~li~~~~~~g~~~~A~~~~~~ 474 (577)
.+..+..+|...|+.++|...+++
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHH
Confidence 444444444444444444444443
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.72 E-value=1.4e-07 Score=80.92 Aligned_cols=161 Identities=16% Similarity=0.071 Sum_probs=111.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHH-H-
Q 008097 273 TYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKIL-G- 350 (577)
Q Consensus 273 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~-~- 350 (577)
.+......+.+.|++++|...|+.....+++ +...+..+...+.+.|++++|...++++.+..|+ ..+..+.. .
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS---RGDVKLAKADCLLETKQFELAQELLATIPLEYQD-NSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT---SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCC-hHHHHHHHHHH
Confidence 3455666778888888888888887765333 5667888888888888888888888888777663 22222211 1
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 008097 351 FCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGT 429 (577)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~ 429 (577)
+...+....|...|++..+.. +.+...+..+...+...|++++|+..|+++.+..-.+ +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 122233345678888877752 2357778888888888888888888888888743221 24567778888888888888
Q ss_pred HHHHHHHhh
Q 008097 430 ALKLVEEDM 438 (577)
Q Consensus 430 a~~~~~~~m 438 (577)
|...|++.+
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887443
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.66 E-value=3.4e-07 Score=86.39 Aligned_cols=208 Identities=10% Similarity=0.008 Sum_probs=112.7
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHH
Q 008097 94 TNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKS 173 (577)
Q Consensus 94 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 173 (577)
.|++++|.+++++..+... .. .+...++++.|...|.+. ...|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence 3556677777776655311 11 011146777777776653 45566777777777777766
Q ss_pred HhC----CCCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHH
Q 008097 174 FSF----GFVP-DVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLP-NVDTYNILISSYC 247 (577)
Q Consensus 174 ~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~ 247 (577)
... +-.+ -..+|..+...|...|++++|...++.++.. +.. .|-.. -..+++.+...|.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l------------~~~---~g~~~~~a~~~~~lg~~~~ 127 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM------------YVE---NGTPDTAAMALDRAGKLME 127 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH------------HHT---TTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH------------HHH---cCCHHHHHHHHHHHHHHHH
Confidence 432 1111 1345666667777777777777776654432 111 11000 1245666667777
Q ss_pred hcCChhHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC--C-cccHHHHHHHHH
Q 008097 248 ETGVLDSALDVFNDMKID----GISW-NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG--R-ISPYNSVLYGLY 319 (577)
Q Consensus 248 ~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~-~~~~~~li~~~~ 319 (577)
. |++++|+..|++.... |..+ ...++..+...|.+.|++++|...|++.....+.... . ...+..+..++.
T Consensus 128 ~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~ 206 (307)
T 2ifu_A 128 P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL 206 (307)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence 7 8888888888776542 1000 1345666666777777777777777766543111100 0 112333444444
Q ss_pred hcCCHHHHHHHHHHHhhcCC
Q 008097 320 RENQQDEALEYLKQMEKLFP 339 (577)
Q Consensus 320 ~~g~~~~A~~~~~~~~~~~p 339 (577)
..|++++|...|++.. ..|
T Consensus 207 ~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 207 HRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HTTCHHHHHHHHHHHT-TST
T ss_pred HcCCHHHHHHHHHHHh-CCC
Confidence 4555555555555555 444
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.64 E-value=3.7e-07 Score=94.36 Aligned_cols=150 Identities=11% Similarity=-0.049 Sum_probs=113.0
Q ss_pred CCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHH
Q 008097 284 GGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKR 362 (577)
Q Consensus 284 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 362 (577)
.|++++|.+.+++..+..+. +...|..+...+.+.|++++|.+.+++..+..|+ ...+..+...|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ---DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47889999999998876332 5678889999999999999999999999998776 4567778889999999999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHhh
Q 008097 363 CFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQ---GNVGTALKLVEEDM 438 (577)
Q Consensus 363 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~m 438 (577)
.|++..+.. +.+...|..+...|...|++++|++.|++..+. .| +...+..+...+... |+.++|...+++.+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999998863 346788999999999999999999999999874 35 566788889999999 99999999999666
Q ss_pred c
Q 008097 439 R 439 (577)
Q Consensus 439 ~ 439 (577)
.
T Consensus 156 ~ 156 (568)
T 2vsy_A 156 A 156 (568)
T ss_dssp H
T ss_pred h
Confidence 6
No 114
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.63 E-value=4.1e-06 Score=78.34 Aligned_cols=164 Identities=9% Similarity=-0.035 Sum_probs=108.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCce-------ehHHHHHHhhhcCCHHHHHHHHHHHHHcCC---CCC--HhhHH
Q 008097 313 SVLYGLYRENQQDEALEYLKQMEKLFPRAV-------DRSLKILGFCVDGNVEDAKRCFDQMIEEGG---VPN--VVIYD 380 (577)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~~~~~ 380 (577)
..+..+...|++++|.+.+.+..+..+... .+..+...|...|++++|...|++...... .+. ..+|+
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344455556666666666655554333211 112234455677788888888887765311 111 44788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccc-CCCCCC-CcccH
Q 008097 381 CLIHAYCQEERVREASELMKEMTGH-GYLPI-----ASTFNTVLSGLCRQGNVGTALKLVEEDMRGI-GRGSLP-GSGHY 452 (577)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~-~~~~~p-~~~~~ 452 (577)
.+...|...|++++|+..|++..+. ...|+ ..++..+...|...|++++|..++++.+... ..+..+ -...|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 8999999999999999999988721 01122 2578888889999999999999999665510 011111 25678
Q ss_pred HHHHHHHHHcCChhHH-HHHHHHHH
Q 008097 453 SPLIKALCEKGGFQSA-SMLLVQMV 476 (577)
Q Consensus 453 ~~li~~~~~~g~~~~A-~~~~~~m~ 476 (577)
..+..+|.+.|++++| ...+++..
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 8899999999999999 77777765
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.63 E-value=4.5e-06 Score=78.01 Aligned_cols=162 Identities=8% Similarity=-0.020 Sum_probs=116.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCcee-------hHHHHHHhhhcCCHHHHHHHHHHHHHcCCC-CC----HhhHHHH
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRAVD-------RSLKILGFCVDGNVEDAKRCFDQMIEEGGV-PN----VVIYDCL 382 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l 382 (577)
+..+...|++++|..++++..+..+.... +..+...|...|++++|...|++....... ++ ..+|+.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 55667778888888888877764433221 223555667778899999999998874222 22 2368999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----C-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhccc-CCCCCC-CcccHHH
Q 008097 383 IHAYCQEERVREASELMKEMTG----H-GYLPIA-STFNTVLSGLCRQGNVGTALKLVEEDMRGI-GRGSLP-GSGHYSP 454 (577)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~-~~~~~p-~~~~~~~ 454 (577)
...|...|++++|+..|+++.+ . +..|.. .++..+...|.+.|++++|..++++.+.-. ..+..+ -...|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9999999999999999999873 1 222322 367888899999999999999998665410 111222 2567888
Q ss_pred HHHHHHHcCC-hhHHHHHHHHHH
Q 008097 455 LIKALCEKGG-FQSASMLLVQMV 476 (577)
Q Consensus 455 li~~~~~~g~-~~~A~~~~~~m~ 476 (577)
+..+|.+.|+ +++|.+.+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999995 699999998876
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.61 E-value=5.4e-07 Score=84.04 Aligned_cols=164 Identities=10% Similarity=-0.024 Sum_probs=130.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcc-cHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRIS-PYNS 313 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~ 313 (577)
+...+..+...+...|++++|...|++..... +-+...+..+...+.+.|++++|...++.+....+ +.. ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p----~~~~~~~~ 190 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ----DTRYQGLV 190 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC----SHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc----chHHHHHH
Confidence 45667778888899999999999999998763 34677888899999999999999999998876532 222 2223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCC
Q 008097 314 VLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGV-PNVVIYDCLIHAYCQEER 391 (577)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~ 391 (577)
....+.+.++.++|...+++.....|+. ..+..+...|...|++++|...|.++.+.... .+...+..++..|...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 3334667788888999999998887764 56778888999999999999999999986322 126689999999999999
Q ss_pred HHHHHHHHHHHH
Q 008097 392 VREASELMKEMT 403 (577)
Q Consensus 392 ~~~A~~~~~~m~ 403 (577)
.++|...+++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 999999888765
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.61 E-value=6e-07 Score=92.82 Aligned_cols=153 Identities=14% Similarity=0.018 Sum_probs=117.6
Q ss_pred cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 008097 249 TGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEAL 328 (577)
Q Consensus 249 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 328 (577)
.|++++|...|++..+.. +.+...+..+...|.+.|++++|.+.+++..+..+. +...+..+...|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG---HPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHH
Confidence 478999999999988653 346788999999999999999999999999986333 6678899999999999999999
Q ss_pred HHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 008097 329 EYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQE---ERVREASELMKEMTG 404 (577)
Q Consensus 329 ~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~ 404 (577)
+.+++..+..|+. ..+..+...|.+.|++++|.+.|++..+.. +.+...+..+...|... |++++|.+.+++..+
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999999987764 567788889999999999999999999863 34678899999999999 999999999999987
Q ss_pred CC
Q 008097 405 HG 406 (577)
Q Consensus 405 ~g 406 (577)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 54
No 118
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.60 E-value=1.6e-05 Score=73.89 Aligned_cols=218 Identities=12% Similarity=0.065 Sum_probs=124.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC--CHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhH
Q 008097 162 NLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVG--RVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTY 239 (577)
Q Consensus 162 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 239 (577)
..++|++++++++... +-+...|+.--..+...| .++++++. ++.+....++ +..+|
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~-------------------~~~~L~~nPk-~y~aW 106 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDW-------------------CEEIALDNEK-NYQIW 106 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHH-------------------HHHHHHHCTT-CCHHH
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHH-------------------HHHHHHHCcc-cHHHH
Confidence 3356777776666543 112344555555555555 55555444 3333333222 45555
Q ss_pred HHHHHHH----Hhc---CChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChH--HHHHHHHHHHhccCCCCCCccc
Q 008097 240 NILISSY----CET---GVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRID--DGLKILQLMEDSKEGSKGRISP 310 (577)
Q Consensus 240 ~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~ 310 (577)
+.--..+ ... +++++++.+++.+.+.. +-|..+|+.-.-.+.+.|.++ ++.+.++.+.+.++. +...
T Consensus 107 ~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~---N~sA 182 (306)
T 3dra_A 107 NYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK---NNSA 182 (306)
T ss_dssp HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT---CHHH
T ss_pred HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC---CHHH
Confidence 5544444 334 67788888888887654 446677776666666777776 788888888776332 5666
Q ss_pred HHHHHHHHHhcCC------HHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHH-HHHHHHHHHHcC--CCCCHhhHH
Q 008097 311 YNSVLYGLYRENQ------QDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVED-AKRCFDQMIEEG--GVPNVVIYD 380 (577)
Q Consensus 311 ~~~li~~~~~~g~------~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~p~~~~~~ 380 (577)
|+.-...+.+.+. ++++++.++++....|+ ...|+.+...+.+.|+... ...+.+++...+ -+.+...+.
T Consensus 183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 262 (306)
T 3dra_A 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALE 262 (306)
T ss_dssp HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHH
T ss_pred HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 6666555555554 66666666666665543 3345454444555554322 334444443321 123556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 381 CLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
.+...|.+.|+.++|+++++.+.+
T Consensus 263 ~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 263 TLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Confidence 666666666666667766666654
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.56 E-value=2e-05 Score=73.60 Aligned_cols=167 Identities=7% Similarity=-0.026 Sum_probs=91.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC-CCcCHH----HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCc----ccHH
Q 008097 242 LISSYCETGVLDSALDVFNDMKIDG-ISWNFV----TYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRI----SPYN 312 (577)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~ 312 (577)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...|+........ .++. .+++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-~~~~~~~~~~~~ 159 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-GIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC-CSCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 3566777888888888888877642 122211 2334555666677888888888877763211 1121 1466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCC
Q 008097 313 SVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVP-NVVIYDCLIHAYCQEER 391 (577)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 391 (577)
.+...|...|++++|...|+++.+. ++... +..+ ...+|..+...|.+.|+
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~--------------------------~~~~~--~~~~~~~~~~~nlg~~y~~~~~ 211 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQ--------------------------LEALH--DNEEFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------------------------HHHSS--CCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--------------------------HHhcc--cchhHHHHHHHHHHHHHHHHhH
Confidence 6666777777777777766665431 00000 0011 12245555666666666
Q ss_pred HHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHh
Q 008097 392 VREASELMKEMTG----HGYLPI-ASTFNTVLSGLCRQGN-VGTALKLVEED 437 (577)
Q Consensus 392 ~~~A~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~-~~~a~~~~~~~ 437 (577)
+++|++.+++..+ .+..+. ..++..+..++.+.|+ .++|...+++.
T Consensus 212 y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 212 YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 6666666655542 121222 3455555666666663 46666555533
No 120
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=7.3e-07 Score=80.91 Aligned_cols=197 Identities=12% Similarity=0.002 Sum_probs=135.0
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCcccHHHH-------HHHHHhcCCHHHHHHHHHHHhhcCCCcee------------
Q 008097 283 SGGRIDDGLKILQLMEDSKEGSKGRISPYNSV-------LYGLYRENQQDEALEYLKQMEKLFPRAVD------------ 343 (577)
Q Consensus 283 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~~p~~~~------------ 343 (577)
..++...|.+.|..+...+++ ....|..+ ...+...++..+++..+....++.|+...
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~---~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES---ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh---hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 467777888888877776433 44556666 34555555555555555555554443110
Q ss_pred ----------hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--H
Q 008097 344 ----------RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPI--A 411 (577)
Q Consensus 344 ----------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~ 411 (577)
...+...+...|++++|.++|+.+...+ |+....-.+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1224556778899999999998887643 544366666678889999999999998665432 121 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC--CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 008097 412 STFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP--GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNS 489 (577)
Q Consensus 412 ~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 489 (577)
..+..+..++...|++++|+..|++... ....| ..........++.+.|+.++|...|+++.. ..|+...+..
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~---g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~~~~~~a 246 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEAND---SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPEPKVAAA 246 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT---STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhc---CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHHHHHH
Confidence 3577788899999999999999994433 22224 344677788889999999999999999985 4677555555
Q ss_pred H
Q 008097 490 L 490 (577)
Q Consensus 490 l 490 (577)
|
T Consensus 247 L 247 (282)
T 4f3v_A 247 L 247 (282)
T ss_dssp H
T ss_pred H
Confidence 5
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.53 E-value=3.3e-06 Score=74.59 Aligned_cols=130 Identities=12% Similarity=0.025 Sum_probs=88.1
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008097 347 KILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGN 426 (577)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 426 (577)
+...+...|++++|...|++.. .|+...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 3445556677777777776663 3567777777788888888888888888777642 2345567777777788888
Q ss_pred HHHHHHHHHHhhcccCCC------------CCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 008097 427 VGTALKLVEEDMRGIGRG------------SLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDY 484 (577)
Q Consensus 427 ~~~a~~~~~~~m~~~~~~------------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 484 (577)
+++|...|++.+. ...+ ..| ....+..+..+|.+.|++++|.+.+++..+ +.|+.
T Consensus 87 ~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~ 154 (213)
T 1hh8_A 87 YDLAIKDLKEALI-QLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHH-TTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG
T ss_pred HHHHHHHHHHHHH-hCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc
Confidence 8888888875444 1100 111 225677788888888888888888888874 44543
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.50 E-value=5.5e-06 Score=73.16 Aligned_cols=124 Identities=10% Similarity=-0.071 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL 318 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 318 (577)
+..+...+...|++++|+..|++.. .|+...+..+...|...|++++|...|+......+ .+...|..+..++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK---HLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---cchHHHHHHHHHH
Confidence 4455566777788888888887663 55777777788888888888888888887776532 2556677777777
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCc-----------------eehHHHHHHhhhcCCHHHHHHHHHHHHH
Q 008097 319 YRENQQDEALEYLKQMEKLFPRA-----------------VDRSLKILGFCVDGNVEDAKRCFDQMIE 369 (577)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p~~-----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 369 (577)
...|++++|...|++..+..|+. ..+..+...|.+.|++++|...|++..+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 88888888888887777755432 2344455556666666666666666655
No 123
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.48 E-value=3.9e-06 Score=76.17 Aligned_cols=184 Identities=9% Similarity=-0.043 Sum_probs=101.5
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHH-------HHHHHhcCChhHHHHHHHHHHHCCCCcCH---------------
Q 008097 214 LGKVKGGCRFLKEMERKGCLPNVDTYNIL-------ISSYCETGVLDSALDVFNDMKIDGISWNF--------------- 271 (577)
Q Consensus 214 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~--------------- 271 (577)
.++...|.+.|.+..+..+. ....|..+ ...+...++..+++..+..-.. +.|+.
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred CCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 45555555556666665332 45667766 4555555556666655555443 22221
Q ss_pred -------HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---c
Q 008097 272 -------VTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR---A 341 (577)
Q Consensus 272 -------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~ 341 (577)
.........+...|++++|.++|+.+...+++ +. ....+...+.+.+++++|+..|+...+..+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~---~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE---HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH---HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc---hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHH
Confidence 12233455566777788887777766543211 22 4445555667777777777777654442211 1
Q ss_pred eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 342 VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN--VVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
..+..+..++...|++++|+..|++.......|. ...+.....++.+.|+.++|..+|+++..
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2344455566666666666666666654221132 23455555666666666666666666665
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.48 E-value=2.5e-06 Score=68.19 Aligned_cols=92 Identities=12% Similarity=-0.005 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHH
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIK 457 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~ 457 (577)
|......|.+.|++++|++.|++.++.. +.+...|..+..++.+.|++++|+..|++.+. +.| +...|..+..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~a~~~lg~ 89 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIR-----LDSKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH-----hhhhhhHHHHHHHH
Confidence 3444444444445555554444444321 11333444444444445555555544443333 233 3344444445
Q ss_pred HHHHcCChhHHHHHHHHHH
Q 008097 458 ALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 458 ~~~~~g~~~~A~~~~~~m~ 476 (577)
+|...|++++|.+.+++..
T Consensus 90 ~~~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555444
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.48 E-value=1.2e-06 Score=72.46 Aligned_cols=101 Identities=7% Similarity=-0.156 Sum_probs=76.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHH
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYS 453 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~ 453 (577)
...|..+...+.+.|++++|+..|++.... .| +...|..+..+|...|++++|...|++.+. +.| ++..|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~-----l~P~~~~~~~ 108 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA-----LGKNDYTPVF 108 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HSSSCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh-----hCCCCcHHHH
Confidence 456777777788888888888888888764 35 566777778888888888888888886655 556 567788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 008097 454 PLIKALCEKGGFQSASMLLVQMVGKGILPDYL 485 (577)
Q Consensus 454 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 485 (577)
.+..+|.+.|++++|...+++..+ +.||..
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 888888888888888888888874 456653
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.48 E-value=1.4e-06 Score=71.96 Aligned_cols=99 Identities=10% Similarity=-0.020 Sum_probs=51.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHH
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYG 317 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 317 (577)
.+..+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|...|++....+|. +...|..+..+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~---~~~~~~~lg~~ 113 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN---DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS---CCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC---CcHHHHHHHHH
Confidence 44444555555555555555555555442 224455555555555555555555555555554322 34455555555
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCC
Q 008097 318 LYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
|.+.|++++|...|++..+..|+
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Confidence 55555555555555555544433
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.46 E-value=8.4e-06 Score=76.18 Aligned_cols=98 Identities=5% Similarity=-0.048 Sum_probs=55.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC-H----HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCC---cc
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGISWN-F----VTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGR---IS 309 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~ 309 (577)
.+...+..+...|++++|...+.+..+.....+ . ..+..+...+...|++++|...+............. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444556667778888888888777665422111 1 122334455666677777777777766432111101 22
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008097 310 PYNSVLYGLYRENQQDEALEYLKQME 335 (577)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~ 335 (577)
+++.+...|...|++++|...|+++.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666666666666666666554
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.43 E-value=1.3e-06 Score=74.81 Aligned_cols=125 Identities=9% Similarity=0.037 Sum_probs=90.8
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--
Q 008097 351 FCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSG-LCRQGNV-- 427 (577)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~-- 427 (577)
+...|++++|...|++..... +.+...|..+...|...|++++|+..|++..+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345677888888888877752 3467788888888888999999999998888642 2255667777777 6788888
Q ss_pred HHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 008097 428 GTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDY 484 (577)
Q Consensus 428 ~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 484 (577)
++|...|++.+. ..| +...+..+..+|...|++++|...+++..+. .|+.
T Consensus 98 ~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 148 (177)
T 2e2e_A 98 AQTRAMIDKALA-----LDSNEITALMLLASDAFMQANYAQAIELWQKVMDL--NSPR 148 (177)
T ss_dssp HHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CCTT
T ss_pred HHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--CCCC
Confidence 899988885555 345 5677888888899999999999999888753 4443
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.43 E-value=5.8e-06 Score=69.48 Aligned_cols=122 Identities=15% Similarity=0.074 Sum_probs=64.3
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008097 348 ILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNV 427 (577)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 427 (577)
...+...|++++|...|++..... +.+..+|..+...|...|++++|++.+++..+.. +.+...+..+...+...|++
T Consensus 20 a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~ 97 (166)
T 1a17_A 20 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 97 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccH
Confidence 334445555555555555555431 2245556666666666666666666666665532 22344555566666666666
Q ss_pred HHHHHHHHHhhcccCCCCCC-CcccH--HHHHHHHHHcCChhHHHHHHHHHH
Q 008097 428 GTALKLVEEDMRGIGRGSLP-GSGHY--SPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 428 ~~a~~~~~~~m~~~~~~~~p-~~~~~--~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
++|...|++.+. +.| +...+ ..++..+.+.|++++|.+.+++..
T Consensus 98 ~~A~~~~~~a~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 98 RAALRDYETVVK-----VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHHH-----HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 666666664443 233 22333 222333555566666666665543
No 130
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.42 E-value=6.8e-07 Score=73.91 Aligned_cols=97 Identities=10% Similarity=-0.061 Sum_probs=71.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHH
Q 008097 375 NVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYS 453 (577)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~ 453 (577)
+...+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|++.+. +.| +...|.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----l~p~~~~~~~ 93 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV-----MDIXEPRFPF 93 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HSTTCTHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----cCCCCchHHH
Confidence 34566667777788888888888888877632 22566677777778888888888888885555 445 567777
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHH
Q 008097 454 PLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 454 ~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
.+..+|...|++++|.+.+++..+
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788888888888888888887764
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.42 E-value=3.2e-06 Score=78.43 Aligned_cols=190 Identities=7% Similarity=-0.055 Sum_probs=123.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+...+..+...+...|++++|+..|++..... +.+...|..+...|.+.|++++|...++...+..+. +...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT---CHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHH
Confidence 45667778888889999999999999888763 336778888888999999999999999988876332 56778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVR 393 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (577)
..++...|++++|...|.+..+..|+. ..+...+....+ ...+ ..+........+++......+.. + ..|+.+
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKK-KRWNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHH-HHHHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHH-HHHHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 889999999999999998887765432 111111211111 1111 11222333333444444444433 2 368888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhc-CCHHHHHHHHHH
Q 008097 394 EASELMKEMTGHGYLPIASTFN-TVLSGLCRQ-GNVGTALKLVEE 436 (577)
Q Consensus 394 ~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~-g~~~~a~~~~~~ 436 (577)
+|++.+++..+. .|+..... .+...+... +..++|.++|.+
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~ 195 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQ 195 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888887763 56554433 333333333 667888888873
No 132
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.41 E-value=0.00011 Score=69.08 Aligned_cols=223 Identities=11% Similarity=0.048 Sum_probs=143.8
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhc-C-CH
Q 008097 248 ETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGG-RIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRE-N-QQ 324 (577)
Q Consensus 248 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~ 324 (577)
+.+..++|++++.+++... +-+..+|+.--..+...| .++++.+.++.+...++. +..+|+.-...+.+. + ++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK---ny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK---SYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC---CHHHHHHHHHHHHHHCCSCC
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHhcCCCh
Confidence 3444567777777777653 224445665555555666 477788888777765322 556666665555555 5 67
Q ss_pred HHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHH--------HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC----
Q 008097 325 DEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVE--------DAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEER---- 391 (577)
Q Consensus 325 ~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---- 391 (577)
++++++++++.+..|. ...|+.......+.|..+ ++++.++++++.. +.|...|+.....+.+.++
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 7788888887776654 344554444433434444 8888888888864 3478889888888877776
Q ss_pred ---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHhhcccC--CCC
Q 008097 392 ---VREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNV--------------------GTALKLVEEDMRGIG--RGS 445 (577)
Q Consensus 392 ---~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~m~~~~--~~~ 445 (577)
++++++.+++++.. .| |...|+.+-..+.+.|+. .+...+.. .+.... .+.
T Consensus 221 ~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 297 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGF-PMPSDPLPEDT 297 (349)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------C-CCCC-CCCSSC
T ss_pred hHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHH-HHHhccccccc
Confidence 68899999998874 45 666677766666666654 23333333 333100 001
Q ss_pred -CCCcccHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 008097 446 -LPGSGHYSPLIKALCEKGGFQSASMLLVQMVGK 478 (577)
Q Consensus 446 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 478 (577)
.+++..+..++++|...|+.++|.++++.+.++
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 246677889999999999999999999999754
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.40 E-value=4.9e-06 Score=66.42 Aligned_cols=101 Identities=13% Similarity=0.030 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHH
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLY 316 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 316 (577)
..+......|.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|+...+.++. +...|..+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK---FIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh---hhHHHHHHHH
Confidence 345556666777777777777777766543 335666666777777777777777777776665322 4555666666
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCc
Q 008097 317 GLYRENQQDEALEYLKQMEKLFPRA 341 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~~ 341 (577)
++...|++++|.+.|++..+..|+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcCC
Confidence 6666666666666666666665543
No 134
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.39 E-value=8.7e-06 Score=64.38 Aligned_cols=93 Identities=16% Similarity=0.210 Sum_probs=39.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHH
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLI 456 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li 456 (577)
.|..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|..++++.+. ..| +...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~la 84 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE-----LDPNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCCccHHHHHHHH
Confidence 34444444444444444444444444321 11233344444444444444444444442222 112 333444444
Q ss_pred HHHHHcCChhHHHHHHHHHH
Q 008097 457 KALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~m~ 476 (577)
..|...|++++|...++++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHH
Confidence 44444444444444444444
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.37 E-value=5e-06 Score=71.01 Aligned_cols=124 Identities=10% Similarity=0.082 Sum_probs=80.1
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHcCCCh--HHHH
Q 008097 215 GKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRG-LCSGGRI--DDGL 291 (577)
Q Consensus 215 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~g~~--~~a~ 291 (577)
|++++|...++....... .+...|..+...|...|++++|...|++..+.. +.+...+..+... |...|++ ++|.
T Consensus 24 ~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 444555555555554422 255677777777777888888888887776643 2355666666666 6677777 7788
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCcee
Q 008097 292 KILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVD 343 (577)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 343 (577)
..++.+....+. +...+..+...+...|++++|...|+++.+..|+...
T Consensus 102 ~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 102 AMIDKALALDSN---EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHhCCC---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 777777765322 4556667777777777777777777777776665443
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.36 E-value=9.2e-06 Score=68.25 Aligned_cols=26 Identities=12% Similarity=-0.046 Sum_probs=10.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
.|..+...|...|++++|...|++..
T Consensus 83 ~~~~~a~~~~~~~~~~~A~~~~~~a~ 108 (166)
T 1a17_A 83 GYYRRAASNMALGKFRAALRDYETVV 108 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.35 E-value=2.5e-06 Score=74.62 Aligned_cols=101 Identities=9% Similarity=-0.085 Sum_probs=58.4
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC--
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTGH----GYLP--IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-- 447 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-- 447 (577)
..++..+...|...|++++|.+.+++..+. +-.| ....+..+...+...|++++|...+++.+......-.|
T Consensus 66 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 145 (203)
T 3gw4_A 66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA 145 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHH
Confidence 345666666777777777777777665531 1111 12345566666777777777777776444310000011
Q ss_pred CcccHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 448 GSGHYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 448 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
....+..+..++...|++++|.+.+++..
T Consensus 146 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 146 IACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 12335667777777777777777777665
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.35 E-value=1.9e-06 Score=71.11 Aligned_cols=102 Identities=13% Similarity=0.028 Sum_probs=68.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+...+..+...+...|++++|...|++..... +.+...|..+..+|...|++++|...|+.....++. +...+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~l 95 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX---EPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CchHHHHH
Confidence 34455566667777777777777777776553 335666677777777777777777777777665332 55566667
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCC
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
..+|...|++++|...|++..+..|+
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 77777777777777777776665444
No 139
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.35 E-value=4.5e-06 Score=66.82 Aligned_cols=105 Identities=10% Similarity=0.022 Sum_probs=72.9
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC------
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG------ 448 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~------ 448 (577)
...+..+...|.+.|++++|++.|++.++. .| +...|..+..+|...|++++|+..+++.+. +.|+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~-----~~~~~~~~~~ 80 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE-----VGRETRADYK 80 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHHTTCCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH-----hCcccchhhH
Confidence 345667777778888888888888887763 35 455677777778888888888888875554 2331
Q ss_pred --cccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 008097 449 --SGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNS 489 (577)
Q Consensus 449 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 489 (577)
...|..+..++...|++++|.+.+++..+ ..||+.+...
T Consensus 81 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~ 121 (127)
T 4gcn_A 81 LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHH
Confidence 13566677777888888888888888764 4566655443
No 140
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.35 E-value=1e-05 Score=64.02 Aligned_cols=114 Identities=15% Similarity=0.138 Sum_probs=92.5
Q ss_pred eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008097 342 VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGL 421 (577)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 421 (577)
..+..+...|...|++++|...|+++.... +.+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 456777888999999999999999998863 3467889999999999999999999999998753 34677888999999
Q ss_pred HhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHc
Q 008097 422 CRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEK 462 (577)
Q Consensus 422 ~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~ 462 (577)
...|++++|..+|++.+. ..| +...+..+..++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE-----LDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHhc
Confidence 999999999999995555 345 455566666655544
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.35 E-value=1.6e-06 Score=80.55 Aligned_cols=192 Identities=7% Similarity=-0.056 Sum_probs=114.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHH
Q 008097 270 NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKI 348 (577)
Q Consensus 270 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~ 348 (577)
+...+..+...+.+.|++++|...|+......+. +...|..+..+|.+.|++++|...+++..+..|+. ..+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4556777777888888888888888888876332 56677888888888888888888888888876654 4566677
Q ss_pred HHhhhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008097 349 LGFCVDGNVEDAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNV 427 (577)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 427 (577)
.+|...|++++|...|++..+.. |+ ...+...+....+. .++.. +.........++......+ ..+ ..|+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYL-TRL-IAAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHH
Confidence 77888888888888888877642 21 11111122111111 11111 1122222233343333333 222 25777
Q ss_pred HHHHHHHHHhhcccCCCCCCC-cccHHHHHHHHHHc-CChhHHHHHHHHHHH
Q 008097 428 GTALKLVEEDMRGIGRGSLPG-SGHYSPLIKALCEK-GGFQSASMLLVQMVG 477 (577)
Q Consensus 428 ~~a~~~~~~~m~~~~~~~~p~-~~~~~~li~~~~~~-g~~~~A~~~~~~m~~ 477 (577)
++|.+.+++.+. ..|+ ......+...+.+. +.+++|.++|.+..+
T Consensus 152 ~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHE-----GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGT-----TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhc-----cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777763333 3453 33334444445554 567777777777654
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.33 E-value=1.3e-05 Score=64.04 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=10.8
Q ss_pred cHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 451 HYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 451 ~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
.+..+..+|.+.|++++|.+.+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 82 AYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.33 E-value=7e-06 Score=65.92 Aligned_cols=114 Identities=13% Similarity=0.019 Sum_probs=74.0
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccH
Q 008097 374 PNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHY 452 (577)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~ 452 (577)
.+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.+. ..| +...+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~~ 87 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQ-----LEPTFIKGY 87 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH-----HCTTCHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH-----hCCCchHHH
Confidence 345567777777777777777777777777632 22556677777777777777777777775444 234 55667
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 008097 453 SPLIKALCEKGGFQSASMLLVQMVGKGILPD-YLTWNSLLICLS 495 (577)
Q Consensus 453 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~ 495 (577)
..+..+|.+.|++++|.+.+++..+. .|+ ...|..+-.++.
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHH
Confidence 77777777777777777777777642 333 234444444443
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.32 E-value=7.9e-06 Score=77.93 Aligned_cols=143 Identities=10% Similarity=-0.021 Sum_probs=95.2
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 008097 309 SPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ 388 (577)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 388 (577)
..+..+...+.+.|++++|...|++..+..|+.... ..+.+..+ .. -....|..+..+|.+
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-----------~~~~~~~~----~~----~~~~~~~nla~~~~~ 208 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-----------SNEEAQKA----QA----LRLASHLNLAMCHLK 208 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-----------CSHHHHHH----HH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-----------ChHHHHHH----HH----HHHHHHHHHHHHHHH
Confidence 345556666666666666666666665554433210 00001000 00 014678888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhH
Q 008097 389 EERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQS 467 (577)
Q Consensus 389 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 467 (577)
.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|++.+. +.| +...+..+..++.+.|+.++
T Consensus 209 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-----l~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 209 LQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ-----LYPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888742 22566788888888889999999998886665 456 56778888888888888888
Q ss_pred H-HHHHHHHH
Q 008097 468 A-SMLLVQMV 476 (577)
Q Consensus 468 A-~~~~~~m~ 476 (577)
| ..++++|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8 45666664
No 145
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.31 E-value=7.9e-06 Score=65.17 Aligned_cols=96 Identities=14% Similarity=0.004 Sum_probs=70.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHH
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSP 454 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~ 454 (577)
...|..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|...+++.+. +.| +...|..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~ 77 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE-----KDPNFVRAYIR 77 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----hCCCcHHHHHH
Confidence 3456667777778888888888888877642 22566777777778888888888888875555 445 5667777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 008097 455 LIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 455 li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
+..+|...|++++|.+.+++..+
T Consensus 78 lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 78 KATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHH
Confidence 88888888888888888887764
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.29 E-value=8.9e-06 Score=65.31 Aligned_cols=93 Identities=11% Similarity=-0.002 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 008097 311 YNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQE 389 (577)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 389 (577)
|..+...+.+.|++++|...|++..+..|+ ...+..+...|...|++++|...|++..+.. +.+...|..+...|...
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 97 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAM 97 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHH
Confidence 444444444444444444444444443332 2223333334444444444444444444431 12344444455555555
Q ss_pred CCHHHHHHHHHHHHh
Q 008097 390 ERVREASELMKEMTG 404 (577)
Q Consensus 390 g~~~~A~~~~~~m~~ 404 (577)
|++++|++.|++..+
T Consensus 98 ~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 98 KDYTKAMDVYQKALD 112 (133)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555443
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.27 E-value=9.9e-06 Score=64.69 Aligned_cols=29 Identities=17% Similarity=0.054 Sum_probs=13.9
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
...|..+...|...|++++|...|++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 80 SKAYGRMGLALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 33444444444445555555555544443
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.27 E-value=2.7e-05 Score=67.90 Aligned_cols=157 Identities=11% Similarity=-0.055 Sum_probs=95.6
Q ss_pred hcCCHhHHHH---HHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCC-CHhhHHHHHHHHHhcCCHh
Q 008097 128 KNGKVGRARS---LMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFS----FGFVP-DVVTITKVLELLCSVGRVM 199 (577)
Q Consensus 128 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~g~~~-~~~~~~~ll~~~~~~g~~~ 199 (577)
..|++++|.+ ++..-+......++.+...+...|++++|+..|++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455666665 33332222344555566666666666666666666543 12122 2456777778888889999
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCc-CHH
Q 008097 200 DAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLP--NVDTYNILISSYCETGVLDSALDVFNDMKID----GISW-NFV 272 (577)
Q Consensus 200 ~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~ 272 (577)
+|...+...... ++ ..+..| ....+..+...+...|++++|...+++.... +.+. -..
T Consensus 84 ~A~~~~~~al~~------------~~---~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 148 (203)
T 3gw4_A 84 AARRCFLEEREL------------LA---SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIAC 148 (203)
T ss_dssp HHHHHHHHHHHH------------HH---HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHH------------HH---HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 988887665432 22 222111 2345777888889999999999999887642 1111 123
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHh
Q 008097 273 TYDTLIRGLCSGGRIDDGLKILQLMED 299 (577)
Q Consensus 273 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 299 (577)
++..+...+...|++++|.+.+++..+
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356677778888888888888877654
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.26 E-value=8.3e-06 Score=65.21 Aligned_cols=91 Identities=15% Similarity=0.223 Sum_probs=45.1
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC----HHHHHHHHHHH
Q 008097 348 ILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHG--YLPI----ASTFNTVLSGL 421 (577)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~ll~~~ 421 (577)
...|.+.|++++|+..|++.++.. +.+...|+.+..+|...|++++|++.+++.++.. ..++ ..+|..+..++
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~ 93 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAF 93 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 334444455555555555544431 2234555555555666666666666655554311 0111 12344455555
Q ss_pred HhcCCHHHHHHHHHHhhc
Q 008097 422 CRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 422 ~~~g~~~~a~~~~~~~m~ 439 (577)
...|++++|++.|++.+.
T Consensus 94 ~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 94 QKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHh
Confidence 666666666666664444
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.21 E-value=1.7e-05 Score=75.58 Aligned_cols=157 Identities=10% Similarity=-0.080 Sum_probs=88.4
Q ss_pred cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 008097 249 TGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEAL 328 (577)
Q Consensus 249 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 328 (577)
.+++++|...|+...... +-+...+..+...|.+.|++++|...|++.....+... +.. .+.+.
T Consensus 126 L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-~~~--------------~~~~~ 189 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES-SFS--------------NEEAQ 189 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC-CCC--------------SHHHH
T ss_pred EeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccc-cCC--------------hHHHH
Confidence 345566665555443321 22567788899999999999999999999998743321 000 00000
Q ss_pred HHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008097 329 EYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYL 408 (577)
Q Consensus 329 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 408 (577)
.+-.. ....+..+...|.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..|++..+. .
T Consensus 190 ~~~~~------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~ 260 (336)
T 1p5q_A 190 KAQAL------RLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--Y 260 (336)
T ss_dssp HHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--C
Confidence 00000 01123334444455555555555555555532 234556666666666677777777777666653 3
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHH
Q 008097 409 P-IASTFNTVLSGLCRQGNVGTA 430 (577)
Q Consensus 409 p-~~~~~~~ll~~~~~~g~~~~a 430 (577)
| +...+..+..++.+.|+.++|
T Consensus 261 P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 261 PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 4 344555666666666666666
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.20 E-value=0.00036 Score=65.18 Aligned_cols=84 Identities=8% Similarity=0.018 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCC-HHHHH
Q 008097 252 LDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGG--RIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQ-QDEAL 328 (577)
Q Consensus 252 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~ 328 (577)
+++++.+++.+.... +-+..+|+.-.-.+.+.+ .++++..+++.+.+.++. +..+|+.-...+...|. +++++
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr---Ny~AW~~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER---NFHCWDYRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhCcCHHHHH
Confidence 344555555554432 224444444444444444 245555555555554222 44444444444444444 34555
Q ss_pred HHHHHHhhcCC
Q 008097 329 EYLKQMEKLFP 339 (577)
Q Consensus 329 ~~~~~~~~~~p 339 (577)
+.+.++.+..|
T Consensus 166 ~~~~~~I~~~p 176 (331)
T 3dss_A 166 AFTDSLITRNF 176 (331)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHHHHHHHCC
Confidence 55555544433
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.20 E-value=9.8e-06 Score=66.29 Aligned_cols=96 Identities=10% Similarity=-0.086 Sum_probs=63.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHH
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSP 454 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~ 454 (577)
...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|++.+. +.| ++..|..
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~ 91 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGAL-----MDINEPRFPFH 91 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCTHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----cCCCCcHHHHH
Confidence 3445556666677777777777777776532 22455666666777777777777777775444 344 5566677
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 008097 455 LIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 455 li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
+..+|...|++++|.+.+++..+
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777777653
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.19 E-value=4.6e-05 Score=59.38 Aligned_cols=96 Identities=13% Similarity=-0.008 Sum_probs=64.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHH
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSP 454 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~ 454 (577)
...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+++.+. ..| +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~ 77 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD-----LKPDWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH-----hCcccHHHHHH
Confidence 4456666677777777777777777776532 22455666666777777777777777774444 234 4566777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 008097 455 LIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 455 li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
+..++...|++++|.+.+++..+
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777777777763
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=4.6e-05 Score=62.36 Aligned_cols=109 Identities=12% Similarity=-0.022 Sum_probs=81.2
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-C
Q 008097 374 PNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPI----ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-G 448 (577)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~ 448 (577)
.+...|..+...+...|++++|++.|++..+. .|+ ...+..+...+...|++++|...+++.+. ..| +
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-----~~~~~ 98 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE-----KDGGD 98 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HTSCC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh-----hCccC
Confidence 35667778888888888888888888888863 466 56677777888888888888888885555 345 5
Q ss_pred cccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 008097 449 SGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPD-YLTWNSLL 491 (577)
Q Consensus 449 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll 491 (577)
...|..+..+|...|++++|.+.+++..+ +.|+ ...|..+-
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 140 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVS--LEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHH
Confidence 67778888888888888888888888875 3454 34444333
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.17 E-value=1.7e-05 Score=64.76 Aligned_cols=100 Identities=12% Similarity=-0.039 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHH
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLY 316 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 316 (577)
..+..+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|...|+.....++. +...+..+..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~ 94 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN---EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CcHHHHHHHH
Confidence 344555566677777777777777776553 335666677777777777777777777777765332 5556666777
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCC
Q 008097 317 GLYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
++...|++++|...|++..+..|+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Confidence 777777777777777776665443
No 156
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=5.1e-05 Score=75.23 Aligned_cols=165 Identities=11% Similarity=0.016 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---c----eehHHHHHHhhhcCCHHHHHHHHHHHHHc----CCCCC-Hhh
Q 008097 311 YNSVLYGLYRENQQDEALEYLKQMEKLFPR---A----VDRSLKILGFCVDGNVEDAKRCFDQMIEE----GGVPN-VVI 378 (577)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~ 378 (577)
+..+...|.+.|++++|.+.+..+.+..+. . ...+.+...+...|+.+.|..++...... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 445556666666666666666655442111 1 11122233344557777777777766542 22222 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCC-C---Cc
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGH----GYLPI-ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSL-P---GS 449 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~-p---~~ 449 (577)
+..+...|...|++++|..++++.... +-+|. ..++..++..|...|++++|..++++... ....+. | -.
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART-AANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHSCCCHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH-HhhcCCCchHHHH
Confidence 667778888888888888887776531 11222 33577777788888888888888774443 111111 1 12
Q ss_pred ccHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 450 GHYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 450 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
..+..+...+...|++++|...+.+..
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456666677777788888877766654
No 157
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.17 E-value=0.00032 Score=65.85 Aligned_cols=31 Identities=16% Similarity=0.490 Sum_probs=21.5
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 374 PNVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
++...+..+++.|...|+.++|.++++.+.+
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 4566667777777777777777777777653
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.15 E-value=2.8e-05 Score=60.04 Aligned_cols=104 Identities=11% Similarity=0.011 Sum_probs=70.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+..+. ..+...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHHHHH
Confidence 44566677777777888888888887777653 335666777777777778888888777777765221 1134556667
Q ss_pred HHHHHhc-CCHHHHHHHHHHHhhcCCC
Q 008097 315 LYGLYRE-NQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 315 i~~~~~~-g~~~~A~~~~~~~~~~~p~ 340 (577)
...+.+. |++++|.+.+....+..|+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 7777777 7777777777777665554
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.14 E-value=2.3e-05 Score=68.24 Aligned_cols=94 Identities=7% Similarity=-0.061 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHH
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPL 455 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~l 455 (577)
..|..+..+|...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++.+. +.| +...+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l 162 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS-----LNPNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH-----HCCCcHHHHHHH
Confidence 567777777888888888888888877642 22556677777778888888888888875555 445 55667777
Q ss_pred HHHHHHcCChhHHH-HHHHHHH
Q 008097 456 IKALCEKGGFQSAS-MLLVQMV 476 (577)
Q Consensus 456 i~~~~~~g~~~~A~-~~~~~m~ 476 (577)
..++...|+.+++. ..++.|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 163 ELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777666666 4555554
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.11 E-value=2.5e-05 Score=63.15 Aligned_cols=98 Identities=10% Similarity=-0.050 Sum_probs=73.6
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccH
Q 008097 374 PNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHY 452 (577)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~ 452 (577)
.+...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+++.+. +.| +...|
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~ 80 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE-----LDGQSVKAH 80 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----hCchhHHHH
Confidence 456777778888888888888888888877642 22456777777788888888888888885555 345 56677
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 453 SPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 453 ~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
..+..+|...|++++|...+++..+
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888888888888887764
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.11 E-value=2.8e-05 Score=61.87 Aligned_cols=98 Identities=10% Similarity=0.036 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHH
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLY 316 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 316 (577)
..|..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|...++...+.++. +...|..+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~ 80 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---FVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHH
Confidence 345555566666677777777776666542 335566666666666667777777666666655322 4455666666
Q ss_pred HHHhcCCHHHHHHHHHHHhhcC
Q 008097 317 GLYRENQQDEALEYLKQMEKLF 338 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~ 338 (577)
++...|++++|...|++..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 6666666666666666655543
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.10 E-value=2.2e-05 Score=62.68 Aligned_cols=97 Identities=9% Similarity=0.114 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC----cccHHH
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG----SGHYSP 454 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~----~~~~~~ 454 (577)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|..++++.+. ......++ ...|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE-VGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh-hccccchhHHHHHHHHHH
Confidence 3344444444444444444444444321 11333344444444444444444444443222 00000011 334444
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 008097 455 LIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 455 li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
+..+|.+.|++++|.+.+++..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 44555555555555555555443
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.10 E-value=2.2e-05 Score=62.61 Aligned_cols=112 Identities=10% Similarity=0.061 Sum_probs=89.2
Q ss_pred ehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHHH
Q 008097 343 DRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGY--LPI----ASTFNT 416 (577)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~~ 416 (577)
.+..+...|...|++++|...|++..... +.+...|..+...|...|++++|+..+++..+..- .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45667788899999999999999998863 44678899999999999999999999999986421 122 667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHH
Q 008097 417 VLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALC 460 (577)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~ 460 (577)
+..++.+.|++++|...|++.+. ..|+...+..+..+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA-----EHRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHH
Confidence 99999999999999999996555 4566665555554443
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.09 E-value=2.9e-05 Score=59.96 Aligned_cols=94 Identities=10% Similarity=-0.047 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC---CcccHH
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP---GSGHYS 453 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p---~~~~~~ 453 (577)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++.+. ..| +...+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~~~~~ 80 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVIN-----VIEDEYNKDVWA 80 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TSCCTTCHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCcccchHHHHH
Confidence 344444445555555555555555544421 12333444445555555555555555553333 122 234445
Q ss_pred HHHHHHHHc-CChhHHHHHHHHHH
Q 008097 454 PLIKALCEK-GGFQSASMLLVQMV 476 (577)
Q Consensus 454 ~li~~~~~~-g~~~~A~~~~~~m~ 476 (577)
.+..++.+. |++++|.+.+++..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHh
Confidence 555555555 55555555555554
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.08 E-value=2.6e-05 Score=61.64 Aligned_cols=91 Identities=10% Similarity=-0.024 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHH
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLI 456 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li 456 (577)
+..+...+.+.|++++|+..|++.++. .| +...+..+..++...|++++|+..|++.+. +.| +...+..+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-----l~P~~~~~~~~la 92 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM-----LDPKDIAVHAALA 92 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHH
Confidence 444445555566666666666665542 23 344555555555666666666666654444 344 445555566
Q ss_pred HHHHHcCChhHHHHHHHHHH
Q 008097 457 KALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~m~ 476 (577)
.+|.+.|++++|...+++..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 93 VSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 66666666666666666655
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=7.4e-05 Score=61.10 Aligned_cols=95 Identities=15% Similarity=-0.003 Sum_probs=55.3
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC----ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 008097 309 SPYNSVLYGLYRENQQDEALEYLKQMEKLFPR----AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIH 384 (577)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 384 (577)
..+..+...+...|++++|...|++..+..|+ ...+..+...|...|++++|...|++..+.. +.+...|..+..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 107 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHH
Confidence 34455555566666666666666666555554 2344445555556666666666666655541 224556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 008097 385 AYCQEERVREASELMKEMTG 404 (577)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m~~ 404 (577)
+|...|++++|...|++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666665
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.06 E-value=5.1e-06 Score=72.49 Aligned_cols=164 Identities=9% Similarity=-0.073 Sum_probs=69.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCC
Q 008097 244 SSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQ 323 (577)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 323 (577)
......|+++++.+.+..-... .......+..+...+...|++++|...|.......+.. ++.... .+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~--~~~~~----- 82 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT-EEWDDQ--ILLDK----- 82 (198)
T ss_dssp ----------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC-TTCCCH--HHHHH-----
T ss_pred hhhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-cccchh--hHHHH-----
Confidence 3344455555555555432211 01133445566666777777777777777776642221 110000 00000
Q ss_pred HHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 324 QDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 324 ~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
...+ ....+..+...|.+.|++++|...|++..+. .+.+...|..+..+|...|++++|++.|++..
T Consensus 83 -~~~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 83 -KKNI-----------EISCNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp -HHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -HHHH-----------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 0000 0012233334444555555555555555443 12244555555566666666666666666655
Q ss_pred hCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 008097 404 GHGYLP-IASTFNTVLSGLCRQGNVGTAL 431 (577)
Q Consensus 404 ~~g~~p-~~~~~~~ll~~~~~~g~~~~a~ 431 (577)
+. .| +...+..+...+...|+.+++.
T Consensus 150 ~~--~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 150 SL--NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 42 23 3334444444444444444444
No 168
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.05 E-value=7.7e-05 Score=58.04 Aligned_cols=99 Identities=16% Similarity=0.046 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHH
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLY 316 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 316 (577)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++......+. +...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD---WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc---cHHHHHHHHH
Confidence 345555556666666666666666665542 224555555666666666666666666666554211 3444555555
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCC
Q 008097 317 GLYRENQQDEALEYLKQMEKLFP 339 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p 339 (577)
++...|++++|...+++..+..|
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHhhHHHHHHHHHHHHHcCC
Confidence 55555555555555555555444
No 169
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.05 E-value=3.7e-05 Score=64.53 Aligned_cols=96 Identities=14% Similarity=0.023 Sum_probs=74.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccH
Q 008097 375 NVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHY 452 (577)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~ 452 (577)
+...|..+...|.+.|++++|++.|++.++. .| +...+..+..+|...|++++|+..|++.+. +.| +...|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~ 82 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATV-----VDPKYSKAW 82 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCHHHH
Confidence 4556777778888888888888888888764 34 566777788888888888888888886555 455 56778
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 453 SPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 453 ~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
..+..+|.+.|++++|.+.+++..+
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888888888888888888888774
No 170
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.04 E-value=0.00027 Score=66.09 Aligned_cols=156 Identities=13% Similarity=0.062 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcC--CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-HHHHHHHH
Q 008097 324 QDEALEYLKQMEKLFPR-AVDRSLKILGFCVDG--NVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEER-VREASELM 399 (577)
Q Consensus 324 ~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~ 399 (577)
+++++.+++.+....|. ...|+.-...+.+.+ .+++++.+++++.+.. +.|..+|+--...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 34555555555554442 234444444444444 3566666666666652 3466677766666666666 46777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHc--
Q 008097 400 KEMTGHGYLPIASTFNTVLSGLCRQ--------------GNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEK-- 462 (577)
Q Consensus 400 ~~m~~~g~~p~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~-- 462 (577)
.++++.. +-|...|+.....+.+. +.++++++++.+.+. +.| |...|+-+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~-----~~P~d~SaW~Y~r~ll~~~~~ 242 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF-----TDPNDQSAWFYHRWLLGAGSG 242 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH-----HSTTCHHHHHHHHHHHHSSSC
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHhccC
Confidence 7777643 22555555555444443 446777777776665 456 566666565555555
Q ss_pred ---------CChhHHHHHHHHHHHCCCCCCHHHHHH
Q 008097 463 ---------GGFQSASMLLVQMVGKGILPDYLTWNS 489 (577)
Q Consensus 463 ---------g~~~~A~~~~~~m~~~~~~p~~~~~~~ 489 (577)
+.++++++.++++.+ +.||. .|..
T Consensus 243 ~~~~~~~~~~~l~~el~~~~elle--~~pd~-~w~l 275 (331)
T 3dss_A 243 RCELSVEKSTVLQSELESCKELQE--LEPEN-KWCL 275 (331)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHh--hCccc-chHH
Confidence 567899999999984 67886 5653
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.04 E-value=2.8e-05 Score=61.47 Aligned_cols=99 Identities=12% Similarity=-0.047 Sum_probs=69.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHH
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYG 317 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 317 (577)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.++. +...+..+..+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Confidence 45556667777888888888888877653 336667777777788888888888888877776333 55567777777
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCC
Q 008097 318 LYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
+.+.|++++|+..+++..+..|+
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC----
T ss_pred HHHcCCHHHHHHHHHHHHHhCcC
Confidence 77777777777777777766554
No 172
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.03 E-value=6.1e-05 Score=63.18 Aligned_cols=105 Identities=8% Similarity=-0.015 Sum_probs=75.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+...|..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|...|+.....++. +...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK---YSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHH
Confidence 34556667777778888888888888877653 336667777777788888888888888877776332 55667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCcee
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRAVD 343 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 343 (577)
..+|...|++++|...|++..+..|+...
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 77777788888888877777776555443
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.02 E-value=0.00012 Score=58.32 Aligned_cols=91 Identities=14% Similarity=0.151 Sum_probs=50.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCce----ehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC---HhhHHHHHHH
Q 008097 313 SVLYGLYRENQQDEALEYLKQMEKLFPRAV----DRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN---VVIYDCLIHA 385 (577)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~ 385 (577)
.+...+.+.|++++|...|+++.+..|+.. .+..+...|.+.|++++|...|+++..... .+ ...+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHH
Confidence 344455555666666666665555444433 344444555566666666666666555321 12 3445556666
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 008097 386 YCQEERVREASELMKEMTG 404 (577)
Q Consensus 386 ~~~~g~~~~A~~~~~~m~~ 404 (577)
|...|++++|...|+++.+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666665
No 174
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.00 E-value=4.2e-05 Score=61.78 Aligned_cols=99 Identities=9% Similarity=-0.053 Sum_probs=61.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+...|..+...+...|++++|...|++..... +.+...+..+...|...|++++|...++......+. +...|..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch---hHHHHHHH
Confidence 45566666666677777777777777666543 334556666666666677777777776666655222 44556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhc
Q 008097 315 LYGLYRENQQDEALEYLKQMEKL 337 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~ 337 (577)
..++...|++++|...|.+..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 66666666666666666665543
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=0.00038 Score=68.80 Aligned_cols=61 Identities=8% Similarity=-0.128 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHC--C--CCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKID--G--ISW-NFVTYDTLIRGLCSGGRIDDGLKILQLME 298 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g--~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 298 (577)
++..+...|...|++++|..+++++... + -.+ ...++..++..|...|++++|..+++...
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 4445555555666666666665554432 1 011 12344445555555555555555555444
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.95 E-value=4.2e-05 Score=63.62 Aligned_cols=101 Identities=14% Similarity=-0.004 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccc-CCCCCC-Cc
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGH----GYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGI-GRGSLP-GS 449 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~-~~~~~p-~~ 449 (577)
.++..+...|...|++++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++.+... ..+..+ ..
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 129 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence 35666777777778888888777776531 1111 13356666777778888888888877544310 011111 24
Q ss_pred ccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 450 GHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 450 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
..+..+...|...|++++|.+.+++..+
T Consensus 130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 130 RACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4577778888888888888888887653
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.94 E-value=3.9e-05 Score=76.90 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=75.3
Q ss_pred HhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 008097 350 GFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVG 428 (577)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~ 428 (577)
.|.+.|++++|...|++..+. .+.+..+|..+..+|.+.|++++|++.+++..+. .| +...+..+..+|...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 345667777777777777664 2234667777777777888888888888777764 34 4556777777777888888
Q ss_pred HHHHHHHHhhcccCCCCCC-CcccHHHHHHH--HHHcCChhHHHHHHH
Q 008097 429 TALKLVEEDMRGIGRGSLP-GSGHYSPLIKA--LCEKGGFQSASMLLV 473 (577)
Q Consensus 429 ~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~--~~~~g~~~~A~~~~~ 473 (577)
+|.+.|++.+. +.| +...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVK-----VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH-----HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888875555 344 34455555555 677778888877777
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.94 E-value=9.1e-05 Score=73.87 Aligned_cols=96 Identities=9% Similarity=0.006 Sum_probs=72.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHH
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSP 454 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~ 454 (577)
...|..+..+|.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|++.+. +.| +...+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~-----l~P~~~~a~~~ 390 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE-----VNPQNKAARLQ 390 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TC----CHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCHHHHHH
Confidence 4678888889999999999999999988743 22566788888899999999999999996655 566 6678888
Q ss_pred HHHHHHHcCChhHHH-HHHHHHHH
Q 008097 455 LIKALCEKGGFQSAS-MLLVQMVG 477 (577)
Q Consensus 455 li~~~~~~g~~~~A~-~~~~~m~~ 477 (577)
+..++.+.|+.++|. .++++|..
T Consensus 391 l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 391 ISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888776 34555543
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.90 E-value=3.9e-05 Score=63.79 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTG----HGYLP-IASTFNTVLSGLCRQGNVGTALKLVEE 436 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 436 (577)
.+..+...+...|++++|.+.+++..+ .+..+ ...++..+...+...|++++|...+++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 344444555555555555555554432 11111 122344455555555555555555553
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.90 E-value=0.00013 Score=58.09 Aligned_cols=99 Identities=12% Similarity=0.023 Sum_probs=55.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcCH---HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHH
Q 008097 241 ILISSYCETGVLDSALDVFNDMKIDGISWNF---VTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYG 317 (577)
Q Consensus 241 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 317 (577)
.+...+...|++++|...|++..+.. +.+. ..+..+..+|.+.|++++|...|+.+....+........+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34455566677777777776666542 1122 3555566666666677777666666665422211113335555556
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCC
Q 008097 318 LYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
+.+.|++++|...|+++.+..|+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC
Confidence 66666666666666666555444
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.87 E-value=5e-05 Score=72.38 Aligned_cols=143 Identities=12% Similarity=0.036 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008097 311 YNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE 390 (577)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (577)
+..+...+.+.|++++|...|.+.....|+... +...|+.+++...+ ....|..+..+|.+.|
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~~~~g 244 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHHHHcC
Confidence 555556666666666676666666655443221 11222222222211 1137888889999999
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHH-HHHcCChhH
Q 008097 391 RVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKA-LCEKGGFQS 467 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~-~~~~g~~~~ 467 (577)
++++|+..+++.++. .| +...+..+..+|...|++++|...|++.+. +.| +...+..+..+ ....+..++
T Consensus 245 ~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~-----l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 245 RYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQK-----YAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp CCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999874 35 567888899999999999999999995554 566 45556666655 334567788
Q ss_pred HHHHHHHHHH
Q 008097 468 ASMLLVQMVG 477 (577)
Q Consensus 468 A~~~~~~m~~ 477 (577)
+..++++|.+
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 8888888873
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.86 E-value=8.6e-05 Score=62.10 Aligned_cols=101 Identities=10% Similarity=-0.028 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CC---------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGH-------GY---------LP-IASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~---------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
..+......+.+.|++++|+..|.+.++. .- .| +...|..+..+|.+.|++++|+..+++.+.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555566666666666666666666542 00 12 234577777788888888888888886655
Q ss_pred ccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 008097 440 GIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDY 484 (577)
Q Consensus 440 ~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 484 (577)
+.| +...|..+..+|...|++++|...+++..+ +.|+.
T Consensus 92 -----~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~ 130 (162)
T 3rkv_A 92 -----REETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAA 130 (162)
T ss_dssp -----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGG
T ss_pred -----cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCC
Confidence 455 567788888888888888888888888774 45654
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.83 E-value=0.00015 Score=72.32 Aligned_cols=120 Identities=7% Similarity=-0.093 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc----------------eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCC
Q 008097 311 YNSVLYGLYRENQQDEALEYLKQMEKLFPRA----------------VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVP 374 (577)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 374 (577)
|..+...+.+.|++++|...|+++.+..|+. ..|..+..+|.+.|++++|+..|++.++.. +.
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~ 349 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SA 349 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Cc
Confidence 4444444555555555555555555443332 455666777888888888888888888763 34
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 008097 375 NVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPI-ASTFNTVLSGLCRQGNVGTALKL 433 (577)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 433 (577)
+...|..+..+|...|++++|+..|++.++. .|+ ...+..+..++.+.|+.+++.+-
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888899999999999999999998873 464 44677777777888888777643
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.82 E-value=0.00016 Score=59.09 Aligned_cols=97 Identities=11% Similarity=-0.079 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc--cCC
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGHGYLPI-------------ASTFNTVLSGLCRQGNVGTALKLVEEDMRG--IGR 443 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~--~~~ 443 (577)
+......+.+.|++++|++.|++.++. .|+ ...|..+..++.+.|++++|+..+++.+.- ..-
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 334444455555555555555555542 232 125666666666666666666666654440 000
Q ss_pred CCCC-CcccH----HHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 444 GSLP-GSGHY----SPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 444 ~~~p-~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
.+.| +...| .....++...|++++|+..|++..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1256 44556 6777777777888888777777763
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.81 E-value=0.00011 Score=73.61 Aligned_cols=116 Identities=14% Similarity=0.064 Sum_probs=66.4
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 008097 317 GLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREA 395 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 395 (577)
.+.+.|++++|.+.+++..+..|+ ...+..+...|.+.|++++|...|++..+.. +.+..+|..+..+|...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 344556666666666666655544 3445555666666666666666666666642 23456677777777777777777
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHH--HHhcCCHHHHHHHHH
Q 008097 396 SELMKEMTGHGYLPI-ASTFNTVLSG--LCRQGNVGTALKLVE 435 (577)
Q Consensus 396 ~~~~~~m~~~g~~p~-~~~~~~ll~~--~~~~g~~~~a~~~~~ 435 (577)
++.|++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777653 232 2233333333 666677777777766
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.75 E-value=2.6e-05 Score=61.21 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 008097 355 GNVEDAKRCFDQMIEEG--GVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTAL 431 (577)
Q Consensus 355 g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~ 431 (577)
|++++|+..|++.++.+ .+.+...|..+...|...|++++|++.|++..+. .| +...+..+..++...|++++|.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHHH
Confidence 44555555555555432 1122344555555555555555555555555542 23 3344555555555555555555
Q ss_pred HHHHHhhc
Q 008097 432 KLVEEDMR 439 (577)
Q Consensus 432 ~~~~~~m~ 439 (577)
..|++.+.
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554333
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.75 E-value=3.9e-05 Score=60.15 Aligned_cols=86 Identities=13% Similarity=0.008 Sum_probs=44.3
Q ss_pred cCChhHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHH
Q 008097 249 TGVLDSALDVFNDMKIDG--ISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDE 326 (577)
Q Consensus 249 ~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 326 (577)
.|++++|+..|++..+.+ -+.+...+..+...|...|++++|...|++..+..+. +...+..+..++.+.|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN---HQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHcCCHHH
Confidence 355566666666655432 1223344555555666666666666666666554222 34445555555555555555
Q ss_pred HHHHHHHHhhc
Q 008097 327 ALEYLKQMEKL 337 (577)
Q Consensus 327 A~~~~~~~~~~ 337 (577)
|...+++..+.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555544
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.71 E-value=0.00023 Score=68.56 Aligned_cols=89 Identities=10% Similarity=-0.033 Sum_probs=58.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccH
Q 008097 375 NVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHY 452 (577)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~ 452 (577)
+...|..+..+|.+.|++++|++.+++.++. .| +...+..+..+|...|++++|...|++.+. +.| +...+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~-----l~P~~~~~~ 344 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQE-----IAPEDKAIQ 344 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCHHHH
Confidence 3456677777777777777777777777763 34 455666677777777777777777775554 345 45556
Q ss_pred HHHHHHHHHcCChhHHHH
Q 008097 453 SPLIKALCEKGGFQSASM 470 (577)
Q Consensus 453 ~~li~~~~~~g~~~~A~~ 470 (577)
..+..++.+.++.+++.+
T Consensus 345 ~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 345 AELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666655543
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.69 E-value=0.00031 Score=57.40 Aligned_cols=62 Identities=11% Similarity=-0.050 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTGH-----GYLPIA-STF----NTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~-~~~----~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
.|+.+..++.+.|++++|+..+++.++. .+.||. ..| .....++...|++++|+..|++.+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666666666667777766666666652 114643 345 6666677777777777777775544
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.69 E-value=0.0011 Score=67.71 Aligned_cols=171 Identities=11% Similarity=0.028 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCC----------HHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcC
Q 008097 287 IDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQ----------QDEALEYLKQMEKLFPRA-VDRSLKILGFCVDG 355 (577)
Q Consensus 287 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 355 (577)
-++|.+.++.+...++. +..+|+.--..+...|+ ++++++.++.+.+..|.. ..|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~---~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCch---hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 45666777776665322 44556555555555555 777888888887766643 45666666666777
Q ss_pred --CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------
Q 008097 356 --NVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE-RVREASELMKEMTGHGYLPIASTFNTVLSGLCRQ-------- 424 (577)
Q Consensus 356 --~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------- 424 (577)
+++++...++++.+.. +.|..+|+.-...+.+.| .++++++.++++++.. .-|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 6688888888888863 357888998888888888 8899999999998754 22666777766666553
Q ss_pred ------CCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhH
Q 008097 425 ------GNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQS 467 (577)
Q Consensus 425 ------g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 467 (577)
+.++++.+++++.+. +.| +...|..+-.++.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~-----~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFF-----TDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHH-----HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHh-----hCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999987776 567 77888888888888887555
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.65 E-value=0.00043 Score=57.76 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=13.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008097 311 YNSVLYGLYRENQQDEALEYLKQMEK 336 (577)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (577)
+......+.+.|++++|+..|.+...
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~ 39 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALT 39 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555555443
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.59 E-value=0.00032 Score=69.88 Aligned_cols=128 Identities=9% Similarity=-0.005 Sum_probs=92.8
Q ss_pred hhhcCCHHHHHHHHHHHHHc-----CC-CCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-CCCCH-HHHHH
Q 008097 351 FCVDGNVEDAKRCFDQMIEE-----GG-VPN-VVIYDCLIHAYCQEERVREASELMKEMTG-----HG-YLPIA-STFNT 416 (577)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~~-~~~~~ 416 (577)
+...|++++|+.++++.++. |. .|+ ..+++.+...|...|++++|+.++++.++ .| -.|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44668888888888777654 11 122 45789999999999999999999988763 22 12433 35888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcccCCCCCC----CcccHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 008097 417 VLSGLCRQGNVGTALKLVEEDMRGIGRGSLP----GSGHYSPLIKALCEKGGFQSASMLLVQMVGK 478 (577)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 478 (577)
|...|...|++++|..++++.+.....-.-| ...+.+.+..++...|++++|..+++++.++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998666522222233 2345667777888889999999999999764
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.56 E-value=0.00027 Score=67.23 Aligned_cols=145 Identities=12% Similarity=0.012 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHH
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLY 316 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 316 (577)
..+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...|..+..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~------------~~~~~nla~ 238 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK------------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH------------THHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH------------HHHHHHHHH
Confidence 34566667777788888888888887654 333321 112222333222110 124555556
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHH-HHhcCCHH
Q 008097 317 GLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVP-NVVIYDCLIHA-YCQEERVR 393 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~~~ 393 (577)
+|.+.|++++|+..+++..+..|+ ...+..+..+|...|++++|...|++..+. .| +...+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666655543 334555556666666666666666666543 22 33344444433 22344556
Q ss_pred HHHHHHHHHHh
Q 008097 394 EASELMKEMTG 404 (577)
Q Consensus 394 ~A~~~~~~m~~ 404 (577)
++..+|.+|..
T Consensus 317 ~a~~~~~~~l~ 327 (338)
T 2if4_A 317 KQKEMYKGIFK 327 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHhhC
Confidence 66667776654
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.54 E-value=0.00088 Score=64.47 Aligned_cols=115 Identities=10% Similarity=0.002 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccc
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGH--------------GYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGI 441 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~ 441 (577)
..|..+...|.+.|++++|++.|++.++. ...| +...|..+..+|.+.|++++|+..+++.+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 301 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE-- 301 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--
Confidence 34666777788888888888888877651 0223 345788888999999999999999996666
Q ss_pred CCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcc
Q 008097 442 GRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPD-YLTWNSLLICLSQQT 498 (577)
Q Consensus 442 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~ 498 (577)
+.| +...|..+..+|.+.|++++|.+.+++..+ +.|+ ...+..+-.++...+
T Consensus 302 ---~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 302 ---IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp ---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred ---hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHH
Confidence 456 678899999999999999999999999985 4554 455555555544433
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.53 E-value=0.00039 Score=69.28 Aligned_cols=134 Identities=4% Similarity=-0.072 Sum_probs=79.8
Q ss_pred HHHhcCChhHHHHHHHHHHHC-----C-CCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhc-----cCCCCCCcccHH
Q 008097 245 SYCETGVLDSALDVFNDMKID-----G-ISW-NFVTYDTLIRGLCSGGRIDDGLKILQLMEDS-----KEGSKGRISPYN 312 (577)
Q Consensus 245 ~~~~~g~~~~A~~~~~~m~~~-----g-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~ 312 (577)
.+...|++++|+.++++.++. | -.| ...+++.|...|...|++++|..++++.... ++..+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888888776542 1 112 2356777788888888888888877765532 111111223466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 008097 313 SVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERV 392 (577)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 392 (577)
.|...|...|++++|..++++..+ +++.......+....+.+.+-.++...+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~--------------------------i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~ 451 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYA--------------------------ILLVTHGPSHPITKDLEAMRMQTEMELRMF 451 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--------------------------HHHHHTCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--------------------------HHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777666655432 222222211111233455666777777888
Q ss_pred HHHHHHHHHHHh
Q 008097 393 REASELMKEMTG 404 (577)
Q Consensus 393 ~~A~~~~~~m~~ 404 (577)
++|..++.++++
T Consensus 452 ~~ae~~~~~~~~ 463 (490)
T 3n71_A 452 RQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887764
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00049 Score=52.83 Aligned_cols=94 Identities=13% Similarity=0.060 Sum_probs=56.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC------
Q 008097 375 NVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG------ 448 (577)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~------ 448 (577)
+...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...+++.+. +.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR-----YTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----SCSSTTSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----hCCCccHHHH
Confidence 44556666667777777777777777766532 22455666666677777777777777774444 3443
Q ss_pred -cccHHHHHHHHHHcCChhHHHHHHHH
Q 008097 449 -SGHYSPLIKALCEKGGFQSASMLLVQ 474 (577)
Q Consensus 449 -~~~~~~li~~~~~~g~~~~A~~~~~~ 474 (577)
...+..+..++...|++++|.+.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 33445555555555555555444433
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.44 E-value=0.0048 Score=62.96 Aligned_cols=169 Identities=8% Similarity=-0.062 Sum_probs=130.7
Q ss_pred CCHHHHHHHHHHHhhcCCCce-ehHHHHHHhhhcCC----------HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008097 322 NQQDEALEYLKQMEKLFPRAV-DRSLKILGFCVDGN----------VEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE 390 (577)
Q Consensus 322 g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (577)
...++|++.++++....|+.. .|+.--..+.+.|+ ++++...++++.+.. +.+..+|+.-...+.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 345788999999999888764 46655555555566 899999999999873 457889999999999999
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHc----
Q 008097 391 --RVREASELMKEMTGHGYLPIASTFNTVLSGLCRQG-NVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEK---- 462 (577)
Q Consensus 391 --~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~---- 462 (577)
+++++++.++++.+.. .-|...|+.-..++.+.| ..+++++++++.+. ..| +...|+....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~-----~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT-----RNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT-----TTCCCHHHHHHHHHHHHHHSCCC
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHH-----HCCCCccHHHHHHHHHHhhcccc
Confidence 7799999999999854 236778888888888889 89999999994444 456 777888888877764
Q ss_pred ----------CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcch
Q 008097 463 ----------GGFQSASMLLVQMVGKGILPD-YLTWNSLLICLSQQTT 499 (577)
Q Consensus 463 ----------g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~ 499 (577)
+.+++|.+.+++... +.|+ ...|.-+-..+...+.
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCC
Confidence 567899999999885 4454 5778877666655443
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.39 E-value=0.0036 Score=50.39 Aligned_cols=111 Identities=7% Similarity=-0.076 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 008097 355 GNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCR----QGNVGTA 430 (577)
Q Consensus 355 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a 430 (577)
+++++|...|++..+.|. |+ .. +...|...+.+++|++.|++..+.| +......+...|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 345666666666666542 22 22 5555555566666777777776654 44555556666665 6677777
Q ss_pred HHHHHHhhcccCCCCCCCcccHHHHHHHHHH----cCChhHHHHHHHHHHHCC
Q 008097 431 LKLVEEDMRGIGRGSLPGSGHYSPLIKALCE----KGGFQSASMLLVQMVGKG 479 (577)
Q Consensus 431 ~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 479 (577)
..+|++... .-++..+..|..+|.. .+++++|.+.+++..+.|
T Consensus 81 ~~~~~~Aa~------~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACG------LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHH------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHc------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777774444 1345566666667766 677777777777776655
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.32 E-value=0.00045 Score=56.31 Aligned_cols=35 Identities=3% Similarity=-0.128 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 008097 356 NVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEER 391 (577)
Q Consensus 356 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 391 (577)
.+++|.+.++...+.. +.+...|+.+..++...++
T Consensus 17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~ 51 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQ 51 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcc
Confidence 3445555555555432 2245555555555555544
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.31 E-value=0.00033 Score=57.11 Aligned_cols=99 Identities=15% Similarity=0.057 Sum_probs=78.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhcccCCCCCC-CcccHH
Q 008097 386 YCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGN----------VGTALKLVEEDMRGIGRGSLP-GSGHYS 453 (577)
Q Consensus 386 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~m~~~~~~~~p-~~~~~~ 453 (577)
..+.+++++|++.+++..+. .| +...|..+..++...|+ +++|+..|++.+. +.| +...|.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~-----ldP~~~~A~~ 84 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL-----IDPKKDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-----HCTTCHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH-----hCcCcHHHHH
Confidence 34567789999999999974 35 66778878888887766 4699999998777 788 678899
Q ss_pred HHHHHHHHcC-----------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008097 454 PLIKALCEKG-----------GFQSASMLLVQMVGKGILPDYLTWNSLLIC 493 (577)
Q Consensus 454 ~li~~~~~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 493 (577)
.+..+|...| ++++|.+.|++..+ +.|+...|..-+..
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 9999999875 89999999999985 68886655444433
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.00024 Score=54.66 Aligned_cols=89 Identities=16% Similarity=0.113 Sum_probs=59.6
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HHHHHH
Q 008097 344 RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPI-------ASTFNT 416 (577)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~ 416 (577)
+..+...+...|++++|...|++..+. .+.+...|..+..+|...|++++|++.+++..+. .|+ ...+..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHHHHH
Confidence 344555666777777777777777665 2336777888888888889999999888888863 454 344555
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 008097 417 VLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~ 435 (577)
+..++...|+.++|...++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 5555666665555544444
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.27 E-value=0.0017 Score=47.55 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=33.6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
...|..+...|...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++.+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3445555555556666666666666555422 11344455555555566666666666654333
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.26 E-value=0.00081 Score=52.15 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 360 AKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 360 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
|...|++..+.. +.+...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++++|...|+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444421 2234455555555555555555555555555421 1123344555555555555555555555
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.22 E-value=0.0097 Score=47.81 Aligned_cols=86 Identities=14% Similarity=-0.022 Sum_probs=51.5
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008097 347 KILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ----EERVREASELMKEMTGHGYLPIASTFNTVLSGLC 422 (577)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 422 (577)
+...|...+.+++|.+.|++..+. -+...+..+...|.. .+++++|++.|++..+.| +...+..+...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL---NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 444444555555566666666654 355566666666665 566777777777766654 3445555555666
Q ss_pred h----cCCHHHHHHHHHHhh
Q 008097 423 R----QGNVGTALKLVEEDM 438 (577)
Q Consensus 423 ~----~g~~~~a~~~~~~~m 438 (577)
. .++.++|..+|++..
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHH
Confidence 5 666777777776433
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.12 E-value=0.0024 Score=49.34 Aligned_cols=79 Identities=16% Similarity=0.059 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHH
Q 008097 393 REASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASML 471 (577)
Q Consensus 393 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 471 (577)
++|++.|++..+.. +.+...+..+...+...|++++|...|++.+. +.| +...|..+..+|...|++++|...
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~ 75 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALD-----FDPTYSVAWKWLGKTLQGQGDRAGARQA 75 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----HCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35778888888743 23677888899999999999999999996666 455 577899999999999999999999
Q ss_pred HHHHHH
Q 008097 472 LVQMVG 477 (577)
Q Consensus 472 ~~~m~~ 477 (577)
+++..+
T Consensus 76 ~~~al~ 81 (115)
T 2kat_A 76 WESGLA 81 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.99 E-value=0.0019 Score=48.61 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=33.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 008097 375 NVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDM 438 (577)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m 438 (577)
+...|..+...|...|++++|+..|++.++. .| +...|..+..+|...|++++|...|++.+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555555666666666666655543 23 23345555555556666666665555333
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.94 E-value=0.0054 Score=44.65 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
...|..+...+...|++++|+..|++..+.. +.+...+..+...|.+.|++++|...+++....
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455666666777777777777777766542 234556666666677777777777777766655
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.87 E-value=0.012 Score=55.10 Aligned_cols=70 Identities=13% Similarity=0.075 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 008097 410 IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLT 486 (577)
Q Consensus 410 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 486 (577)
+..++..+...+...|++++|...+++.+. +.|+...|..+...+.-.|++++|.+.+++... +.|...+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~-----Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t 345 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGID-----LEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANT 345 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcCh
Confidence 444444444444444555555555554443 234444455555555555555555555555542 4444443
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.75 E-value=0.0062 Score=45.65 Aligned_cols=62 Identities=8% Similarity=0.015 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHH
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRK 70 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~ 70 (577)
|.++.++..+...|.+.|++++|+..|+...+.++. +...|..+-.+|... ++++|++.|++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 567888899999999999999999999998876543 456777788888887 99999999884
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.73 E-value=0.011 Score=55.56 Aligned_cols=64 Identities=8% Similarity=-0.071 Sum_probs=33.4
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 374 PNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|+.++|...|++.+.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344455555444444555555555555555532 5544444444555555555555555554444
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.68 E-value=0.072 Score=57.22 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDM 262 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m 262 (577)
...|..+...+.+.|+++.|.+.|..+
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344444444444455555544444443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.47 E-value=0.0084 Score=58.59 Aligned_cols=88 Identities=8% Similarity=-0.057 Sum_probs=58.7
Q ss_pred cCCHHHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCC---C-CcccHHHHHH
Q 008097 389 EERVREASELMKEMTG---HGYLPI----ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSL---P-GSGHYSPLIK 457 (577)
Q Consensus 389 ~g~~~~A~~~~~~m~~---~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~---p-~~~~~~~li~ 457 (577)
.|++++|+.++++..+ .-+.|+ ..+++.+..+|...|++++|..++++.+.....-.. | ...+|+.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4677888887777653 212233 235777888888888888888887755542111112 2 2455788888
Q ss_pred HHHHcCChhHHHHHHHHHH
Q 008097 458 ALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 458 ~~~~~g~~~~A~~~~~~m~ 476 (577)
+|...|++++|..++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 8888888888888888876
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.32 E-value=0.016 Score=56.69 Aligned_cols=89 Identities=15% Similarity=0.041 Sum_probs=56.8
Q ss_pred hhhcCCHHHHHHHHHHHHHc---CCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-CCCCH-HHHHH
Q 008097 351 FCVDGNVEDAKRCFDQMIEE---GGVPN----VVIYDCLIHAYCQEERVREASELMKEMTG-----HG-YLPIA-STFNT 416 (577)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~~-~~~~~ 416 (577)
+.+.|++++|..++++..+. -..|+ ..+++.+...|...|++++|+.++++.+. .| -.|+. .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44566777777777766653 11122 34677777888888888888888777653 12 12332 24677
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhc
Q 008097 417 VLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
|...|...|++++|..++++.+.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777788888887777775444
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.19 E-value=0.022 Score=55.60 Aligned_cols=94 Identities=9% Similarity=-0.082 Sum_probs=69.1
Q ss_pred hcCChHHHHHHHHHHHhC---CCCCC----HhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcC
Q 008097 159 KEENLVNALVLLEKSFSF---GFVPD----VVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKG 231 (577)
Q Consensus 159 ~~~~~~~A~~~~~~m~~~---g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~ 231 (577)
..|++++|+.++++.+.. -+-|+ ..+++.+..+|...|++++|..++++++. +++......
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~------------i~~~~lG~~ 377 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK------------PYSKHYPVY 377 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------HHHHHSCSS
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH------------HHHHHcCCC
Confidence 357899999999887653 12222 46888999999999999999999876544 344444332
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008097 232 CLPNVDTYNILISSYCETGVLDSALDVFNDMKI 264 (577)
Q Consensus 232 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 264 (577)
.+-...+++.|...|...|++++|+.+|++..+
T Consensus 378 Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 378 SLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 222345788888999999999999999888764
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.12 E-value=0.029 Score=41.20 Aligned_cols=62 Identities=16% Similarity=0.106 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 410 IASTFNTVLSGLCRQGN---VGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 410 ~~~~~~~ll~~~~~~g~---~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
|...+..+..++...++ .++|..++++.+. +.| ++.....+...+.+.|++++|...|+++.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~-----~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ-----LEPYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-----HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444433222 4555555554444 344 44455555555555555555555555555
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.06 E-value=0.019 Score=56.09 Aligned_cols=99 Identities=8% Similarity=-0.082 Sum_probs=73.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC---CCCC----HhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHH
Q 008097 154 ICAYCKEENLVNALVLLEKSFSFG---FVPD----VVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKE 226 (577)
Q Consensus 154 i~~~~~~~~~~~A~~~~~~m~~~g---~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~ 226 (577)
+..+.+.|++++|+.++++.+... +.|+ ..+++.+..+|...|++++|..++++++. +++.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~------------i~~~ 361 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME------------PYRI 361 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------HHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH------------hHHH
Confidence 445667899999999999987642 2222 46788899999999999999999876543 3444
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008097 227 MERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKI 264 (577)
Q Consensus 227 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 264 (577)
..-...+-...+++.|...|...|++++|+.++++..+
T Consensus 362 ~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 362 FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44332222345788888899999999999998888764
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.06 E-value=0.0085 Score=44.60 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=37.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 008097 243 ISSYCETGVLDSALDVFNDMKIDGISWNFV-TYDTLIRGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
...+...|++++|...|++..+.. +.+.. .+..+..+|...|++++|.+.|+.....
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345566777777777777766542 22445 6666667777777777777777777665
No 218
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.98 E-value=8.2e-06 Score=77.71 Aligned_cols=261 Identities=11% Similarity=0.070 Sum_probs=132.8
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHH
Q 008097 13 IFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGL 91 (577)
Q Consensus 13 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~ 91 (577)
+|+.|..++.+.|++.+|++.|=+. .|...|..+|.+..+. .+++-+..+. |.+.. ..++..=+.|+-+|
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~--MaRk~-~ke~~IDteLi~ay 126 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ--MARKK-ARESYVETELIFAL 126 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHH--TTSTT-CCSTTTTHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHH--HHHHH-hcccccHHHHHHHH
Confidence 4455555555555555554433222 2233344455554444 4554444443 22211 11223334455555
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHH
Q 008097 92 CLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLE 171 (577)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 171 (577)
++.+++.+-++.+ -.||..-...+.+-+...|.++.|.-+|..+. .|.-|...+++.|++..|.+.-+
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----N~akLAstLV~L~~yq~AVdaAr 194 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGAR 194 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----CCTTTSSSSSSCSGGGSSTTTTT
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----cHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544322221 12444444455555555555555555554433 24444445556666666654322
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 008097 172 KSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGV 251 (577)
Q Consensus 172 ~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 251 (577)
+ .-++.||-.+-.+|...+.+..|...--.++- ...-...++.-|-..|.
T Consensus 195 K------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv------------------------hadeL~elv~~YE~~G~ 244 (624)
T 3lvg_A 195 K------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV------------------------HADELEELINYYQDRGY 244 (624)
T ss_dssp T------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC------------------------CSSCCSGGGSSSSTTCC
T ss_pred h------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc------------------------cHHHHHHHHHHHHhCCC
Confidence 2 23678899999999999888877654221111 22223445566777788
Q ss_pred hhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC-------CcccHHHHHHHHHhcCCH
Q 008097 252 LDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG-------RISPYNSVLYGLYRENQQ 324 (577)
Q Consensus 252 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~li~~~~~~g~~ 324 (577)
+++-+.+++.-... -+...-+|+-|.-.|++- ++++-.+-++..-.+ -..| ....|.-++..|.+-.++
T Consensus 245 f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sr--iNipKviracE~ahLW~ElvfLY~~ydE~ 320 (624)
T 3lvg_A 245 FEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEY 320 (624)
T ss_dssp CTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSS--SCCTTTHHHHTTTTCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh--ccHHHHHHHHHHHhhHHHHHHHHhcchhH
Confidence 88777777766532 134555666666666654 444444444332221 1111 223467777777777777
Q ss_pred HHHH
Q 008097 325 DEAL 328 (577)
Q Consensus 325 ~~A~ 328 (577)
+.|.
T Consensus 321 DnA~ 324 (624)
T 3lvg_A 321 DNAI 324 (624)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.89 E-value=0.44 Score=36.93 Aligned_cols=132 Identities=8% Similarity=-0.029 Sum_probs=81.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh---hhcCChhHHHHHHHHHHHcCCCCCh
Q 008097 160 EENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ---GRLGKVKGGCRFLKEMERKGCLPNV 236 (577)
Q Consensus 160 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~g~~~~a~~~~~~~~~~~~~p~~ 236 (577)
.|..++..++..+..+.. +..-|+-+|--....-+-+-..++++.+.+. ..||++.....-+-.+-. +.
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~-----~s 91 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNT-----LN 91 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTC-----CC
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcc-----hH
Confidence 345555555555544321 2223333333223333333334444443333 556666655555544332 56
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
......++.....|+-|+-.+++..+.. +.+|++.....+..+|.+.|+..+|.+++.+.-+.
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 6677788888999999999999988644 34778888888999999999999999999888776
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.84 E-value=0.066 Score=39.25 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=8.1
Q ss_pred HHHHHcCCChHHHHHHHHHHH
Q 008097 278 IRGLCSGGRIDDGLKILQLME 298 (577)
Q Consensus 278 l~~~~~~g~~~~a~~~~~~~~ 298 (577)
...+.+.|++++|+..|+.+.
T Consensus 50 g~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 50 ANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333333333333333333333
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.81 E-value=0.3 Score=52.32 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=10.4
Q ss_pred HHHHHHHHcCCChHHHHHHH
Q 008097 275 DTLIRGLCSGGRIDDGLKIL 294 (577)
Q Consensus 275 ~~ll~~~~~~g~~~~a~~~~ 294 (577)
..++..+.+.|..++|.++.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~ 652 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNIS 652 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHC
T ss_pred HHHHHHHHhCCChHHheecC
Confidence 44455555555555555443
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.77 E-value=0.033 Score=41.22 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=36.3
Q ss_pred HHhhhcCCHHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008097 349 LGFCVDGNVEDAKRCFDQMIEEGGVPNVV-IYDCLIHAYCQEERVREASELMKEMTGH 405 (577)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 405 (577)
..+.+.|++++|...|++..+.. +.+.. .|..+..+|...|++++|++.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455666666777776666642 22445 6777777777777777777777777753
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.52 E-value=0.069 Score=47.99 Aligned_cols=89 Identities=16% Similarity=0.135 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHhhcccCCCCCC--CcccHHHHHHHHHH
Q 008097 392 VREASELMKEMTGHGYLPI---ASTFNTVLSGLCR-----QGNVGTALKLVEEDMRGIGRGSLP--GSGHYSPLIKALCE 461 (577)
Q Consensus 392 ~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~m~~~~~~~~p--~~~~~~~li~~~~~ 461 (577)
..+|..++++.++ +.|+ ...|..+...|.. -|+.++|.+.|++.+. +.| +..++....+.+++
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~-----LnP~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR-----YCSAHDPDHHITYADALCI 251 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH-----HCCTTCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH-----hCCCCCchHHHHHHHHHHH
Confidence 4566666666666 4465 4456666666766 3788888888886666 667 36777777777777
Q ss_pred c-CChhHHHHHHHHHHHCCCC--CCHHHH
Q 008097 462 K-GGFQSASMLLVQMVGKGIL--PDYLTW 487 (577)
Q Consensus 462 ~-g~~~~A~~~~~~m~~~~~~--p~~~~~ 487 (577)
. |+.++|.+.+++....+.. |+...+
T Consensus 252 ~~gd~~~a~~~L~kAL~a~p~~~P~~~la 280 (301)
T 3u64_A 252 PLNNRAGFDEALDRALAIDPESVPHNKLL 280 (301)
T ss_dssp TTTCHHHHHHHHHHHHHCCGGGCSSCHHH
T ss_pred hcCCHHHHHHHHHHHHcCCCCCCCChhHH
Confidence 4 7788888888887765555 443333
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.73 Score=37.99 Aligned_cols=46 Identities=9% Similarity=0.081 Sum_probs=24.2
Q ss_pred HHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 008097 281 LCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQM 334 (577)
Q Consensus 281 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 334 (577)
..+.|+++.|.++.+.+ . +...|..|.......|+++-|.+.|.+.
T Consensus 15 AL~lg~l~~A~e~a~~l--~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--N------DSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--C------CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh--C------CHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34455555555554433 1 3445555555555555555555555544
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.46 E-value=0.096 Score=42.10 Aligned_cols=84 Identities=14% Similarity=0.063 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhcccCCCCCC--CcccHHHHHHHHHHcCChhHH
Q 008097 394 EASELMKEMTGHGYLPIASTFNTVLSGLCRQG---NVGTALKLVEEDMRGIGRGSLP--GSGHYSPLIKALCEKGGFQSA 468 (577)
Q Consensus 394 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~m~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A 468 (577)
.+.+-|.+....|. ++..+-..+..++.+++ ++++|..+|++.+. . . .| +.+.+-.+.-+|.+.|++++|
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~--~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP--K-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH--H-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--c-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 33444444444332 44445445555555555 44456666653333 1 0 13 234444455555666666666
Q ss_pred HHHHHHHHHCCCCCCH
Q 008097 469 SMLLVQMVGKGILPDY 484 (577)
Q Consensus 469 ~~~~~~m~~~~~~p~~ 484 (577)
.+.++.+.+ ++|+.
T Consensus 91 ~~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHHH--HCTTC
T ss_pred HHHHHHHHh--cCCCC
Confidence 666666663 55654
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.40 E-value=0.088 Score=47.32 Aligned_cols=84 Identities=13% Similarity=0.128 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhcCCC---ceehHHHHHHhhhc-----CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-CCHHHH
Q 008097 325 DEALEYLKQMEKLFPR---AVDRSLKILGFCVD-----GNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQE-ERVREA 395 (577)
Q Consensus 325 ~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A 395 (577)
..|...+++..++.|+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++......+++. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 3444445555555554 23445555555552 66666666666666632211355555566666553 666666
Q ss_pred HHHHHHHHhCCCC
Q 008097 396 SELMKEMTGHGYL 408 (577)
Q Consensus 396 ~~~~~~m~~~g~~ 408 (577)
.+.+++.+.....
T Consensus 260 ~~~L~kAL~a~p~ 272 (301)
T 3u64_A 260 DEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHCCGG
T ss_pred HHHHHHHHcCCCC
Confidence 6666666654443
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.05 E-value=0.9 Score=35.22 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=69.2
Q ss_pred CCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHH
Q 008097 284 GGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRC 363 (577)
Q Consensus 284 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 363 (577)
.|.+++..++..+...+. +..-+|.+|--....-+-+-..+.++.+-+.+. ...||++......
T Consensus 20 dG~v~qGveii~k~~~ss-----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD-----------is~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS-----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD-----------LDKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS-----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC-----------GGGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC-----CccccceeeeecchhhchhHHHHHHHHHhhhcC-----------cHhhhcHHHHHHH
Confidence 466777777776666542 333445555444444444544555554433211 1245555554444
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 364 FDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 364 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
+-.+- .+....+..++.+...|+-++-.+++..+.. +.+|++.....+.+||.+.|+..+|.+++.
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 44332 2444455555666666666666666666433 235566666666666666666666666665
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.99 E-value=0.21 Score=39.58 Aligned_cols=107 Identities=13% Similarity=0.118 Sum_probs=72.3
Q ss_pred CCCHHHHHHHHHHHhccCCh------hHHHHHHHHHhhCCCCCC-HHHHHHHHHHH------Hhc-CHHHHHHHHHHHHh
Q 008097 8 PPDESIFITVIRGLGRARMI------NDVVKATDLVSRFNMTPS-LKIFNSILDVL------VKE-DIDLARAFYRKKMM 73 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~-~~~~~~li~~~------~~~-~~~~a~~~~~~~m~ 73 (577)
|.|+++|-..+...-+.|++ +..+++|++....- +|+ -..|...|... ... +.++|+++|. .+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~-~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQ-MAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHH-HHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHH
Confidence 56888888888888888999 88889999886542 232 22222222221 112 7888888888 565
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcc
Q 008097 74 ASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSV 117 (577)
Q Consensus 74 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 117 (577)
...-. =...|......-.+.|++..|.+++...+..+..|...
T Consensus 88 ~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 88 ANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 43222 26666666666678899999999999888887665443
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.86 E-value=1.4 Score=36.37 Aligned_cols=101 Identities=10% Similarity=0.079 Sum_probs=69.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHH
Q 008097 88 MKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNAL 167 (577)
Q Consensus 88 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 167 (577)
.......|+++.|.++.+.+ .+...|..|.+...+.|+++-|++.|.+... +..+.-.|.-.|+.++-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHH
Confidence 34455788888888887765 3677899999999999999999998888764 455555566677776666
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 008097 168 VLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEIL 205 (577)
Q Consensus 168 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 205 (577)
++-+.....| -++.....+.-.|+++++.+++
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 5555444333 2344444555667777777765
No 230
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.15 E-value=2.9e-05 Score=74.03 Aligned_cols=221 Identities=12% Similarity=0.154 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 008097 47 KIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHS 125 (577)
Q Consensus 47 ~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 125 (577)
..|..+-.+.... ...+|++-|- + .-|+..|..++.++.+.|.+++-.+.+....+. ..++.+=+.|+-+
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyI----k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYI----K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSC----C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHH----h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 3455555555555 5555554432 1 124445556666666666666655555544443 2234444556666
Q ss_pred HHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 008097 126 LCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEIL 205 (577)
Q Consensus 126 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 205 (577)
|++.+++.+-.+++ ..||..-...+..-|...|.++.|.-+|..+. -|..|...+.+.|++..|.+.
T Consensus 126 yAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~AVda- 192 (624)
T 3lvg_A 126 LAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDG- 192 (624)
T ss_dssp HHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSSTTT-
T ss_pred HHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHHHHH-
Confidence 66666544432221 12555555555555555555555555444321 122333344445554444332
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC
Q 008097 206 EESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGG 285 (577)
Q Consensus 206 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 285 (577)
..+ .-++.||-.+-.+|...+.+.-|.-.--.+.-. || -+..++..|-..|
T Consensus 193 ---------------------ArK---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G 243 (624)
T 3lvg_A 193 ---------------------ARK---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRG 243 (624)
T ss_dssp ---------------------TTT---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTC
T ss_pred ---------------------HHh---cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCC
Confidence 111 126677777777777777777665554444321 11 1223555677777
Q ss_pred ChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhc
Q 008097 286 RIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRE 321 (577)
Q Consensus 286 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 321 (577)
.+++-+.+++.-... .......++-|.-.|++-
T Consensus 244 ~f~ELIsLlEaglgl---ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 244 YFEELITMLEAALGL---ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp CCTTSTTTHHHHTTS---TTCCHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHhCC---CchhHHHHHHHHHHHHhc
Confidence 777777777765532 122445566666666554
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.09 E-value=0.32 Score=39.07 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 008097 355 GNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE---RVREASELMKEMTGHGYLP--IASTFNTVLSGLCRQGNVGT 429 (577)
Q Consensus 355 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~ 429 (577)
..+..+.+-|.+....+. ++..+.-.+..++++.+ +.++++.+|++..+.. .| +...+-.+.-+|.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHH
Confidence 456778888888877655 78888888999999988 6679999999999754 35 24455567778899999999
Q ss_pred HHHHHHHhhcccCCCCCCC
Q 008097 430 ALKLVEEDMRGIGRGSLPG 448 (577)
Q Consensus 430 a~~~~~~~m~~~~~~~~p~ 448 (577)
|+++++..++ +.|+
T Consensus 90 A~~y~~~lL~-----ieP~ 103 (152)
T 1pc2_A 90 ALKYVRGLLQ-----TEPQ 103 (152)
T ss_dssp HHHHHHHHHH-----HCTT
T ss_pred HHHHHHHHHh-----cCCC
Confidence 9999996666 6773
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.70 E-value=0.35 Score=36.13 Aligned_cols=20 Identities=15% Similarity=0.049 Sum_probs=7.7
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 008097 382 LIHAYCQEERVREASELMKE 401 (577)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~ 401 (577)
|...+...|+++.|...|++
T Consensus 11 lG~~~~~~~~y~~A~~W~~~ 30 (104)
T 2v5f_A 11 LGKVAYTEADYYHTELWMEQ 30 (104)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHH
Confidence 33333333344444333333
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.43 E-value=0.24 Score=37.06 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhccCC----CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 008097 274 YDTLIRGLCSGGRIDDGLKILQLMEDSKEG----SKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 274 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
+..+...+.+.|+++.|...|+...+.... ..+....+..+..++.+.|+++.|...++++.+..|+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 334444455555555555555544432100 0112233444444555555555555555554444443
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.67 E-value=1.1 Score=35.64 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=44.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 008097 353 VDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPI 410 (577)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 410 (577)
..+++++|.++|+.+.+.+-+- ...|.....--.++|+...|.+++.+.+..+-+|.
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 3478899999999987763222 77788888888889999999999999988765543
No 235
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.05 E-value=0.65 Score=33.75 Aligned_cols=63 Identities=17% Similarity=0.297 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHH
Q 008097 391 RVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIK 457 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~ 457 (577)
+.-+..+-++.+....+.|++....+.+.||.+..++.-|.++|+ .++ ..+.+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE-~iK---~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILE-VVK---DKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHH-HHH---HHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHH-HHH---HHhcCchhhHHHHHH
Confidence 445666667777777888999999999999999999999999998 776 223444556776663
No 236
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.09 E-value=9.2 Score=37.27 Aligned_cols=187 Identities=11% Similarity=0.081 Sum_probs=94.8
Q ss_pred CChhHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCcCHHHHHHHHHHH----HcC
Q 008097 215 GKVKGGCRFLKEMERK-----GCLPNVDTYNILISSYCETGVLDSALDVFNDMKID-GISWNFVTYDTLIRGL----CSG 284 (577)
Q Consensus 215 g~~~~a~~~~~~~~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~~~----~~~ 284 (577)
|+++.|.+.+..+.+. ...........++..|...|+++...+.+..+.+. |..+.. ...+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 6677777766655542 12223445666777788888888777766655532 332222 22333322 222
Q ss_pred CChHH--HHHHHHHHHhccCCCCCCc-----ccHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCCc-----eehHHHHHH
Q 008097 285 GRIDD--GLKILQLMEDSKEGSKGRI-----SPYNSVLYGLYRENQQDEALEYLKQMEKL--FPRA-----VDRSLKILG 350 (577)
Q Consensus 285 g~~~~--a~~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~p~~-----~~~~~l~~~ 350 (577)
...+. -..+.+.+.....+ +.-. .....|...+...|++.+|..++..+... .... ..+...+..
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~-kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTEN-KIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSC-CCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22222 11122111111101 0000 11245566777777777777777776531 1111 123334556
Q ss_pred hhhcCCHHHHHHHHHHHHHc----CCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 351 FCVDGNVEDAKRCFDQMIEE----GGVPN--VVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
|...+++..|..++.++... ..+|+ ...+..++..+...+++.+|.+.|.+..+
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 66777777777777765422 11122 23455666666667777777766666553
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.39 E-value=2.2 Score=32.90 Aligned_cols=16 Identities=38% Similarity=0.368 Sum_probs=7.6
Q ss_pred HHHhcCCHHHHHHHHH
Q 008097 420 GLCRQGNVGTALKLVE 435 (577)
Q Consensus 420 ~~~~~g~~~~a~~~~~ 435 (577)
++.+.|++++|+++++
T Consensus 83 g~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHH
Confidence 4444444444444444
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.36 E-value=1.7 Score=45.20 Aligned_cols=129 Identities=6% Similarity=-0.033 Sum_probs=73.0
Q ss_pred HHHHHHHHhccCC-hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--CHHHHHHHHHHHHhh-----cCCCC-CH---
Q 008097 14 FITVIRGLGRARM-INDVVKATDLVSRFNMTPSLKIFNSILDVLVKE--DIDLARAFYRKKMMA-----SGVQG-DD--- 81 (577)
Q Consensus 14 ~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~a~~~~~~~m~~-----~~~~~-~~--- 81 (577)
-..|+..+...|+ ++.|..+|+.+.+.++..+......+|..+.+. .--+|.++..+.+.. ....+ +.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3455555555666 477888888887654322333333334333222 233444444422211 01111 11
Q ss_pred -------hhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhcc
Q 008097 82 -------YTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDME 143 (577)
Q Consensus 82 -------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 143 (577)
...+.-...|...|+++-|+++-.+....- +.+-.+|-.|...|.+.|+++.|+-.++.++
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 011112334556788888888888877752 3345678888888888888888888888887
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=88.98 E-value=1.3 Score=34.06 Aligned_cols=84 Identities=20% Similarity=0.184 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHH---HHHHHHHHHhccCCCCC--CcccHHHHHHHHHhcCCHHHH
Q 008097 253 DSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDD---GLKILQLMEDSKEGSKG--RISPYNSVLYGLYRENQQDEA 327 (577)
Q Consensus 253 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A 327 (577)
..+.+-|......|. ++..+-..+.-++.++.+... ++.+++.+... + .| .....-.+.-++.+.|++++|
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--G-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--S-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--C-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 334444444443332 455555555556666655444 66666665543 1 01 111223344455566666666
Q ss_pred HHHHHHHhhcCCC
Q 008097 328 LEYLKQMEKLFPR 340 (577)
Q Consensus 328 ~~~~~~~~~~~p~ 340 (577)
.+.++.+.+..|+
T Consensus 94 ~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCC
Confidence 6666665555553
No 240
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.62 E-value=1.7 Score=33.58 Aligned_cols=62 Identities=18% Similarity=0.303 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHH
Q 008097 392 VREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIK 457 (577)
Q Consensus 392 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~ 457 (577)
.-+..+-++.+....+.|++....+.+.+|.+..++.-|.++|+ .++ ..+.+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE-~vK---~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILE-VVK---DKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHH-HHH---HHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHH-HHH---HhcCCchhhHHHHHH
Confidence 33455566677777788999999999999999999999999998 776 234455566777663
No 241
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.27 E-value=4.9 Score=29.12 Aligned_cols=88 Identities=11% Similarity=0.024 Sum_probs=61.3
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHH
Q 008097 94 TNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKS 173 (577)
Q Consensus 94 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 173 (577)
....++|..+-+.+...|. ...+--.-+..+...|++++|..+.+...-||...|.+|-.. +.|..+++...+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 4567788777777776643 222222234457788999999999999999999999887553 667788888888777
Q ss_pred HhCCCCCCHhhHH
Q 008097 174 FSFGFVPDVVTIT 186 (577)
Q Consensus 174 ~~~g~~~~~~~~~ 186 (577)
...| .|....|.
T Consensus 96 a~sg-~p~~q~Fa 107 (116)
T 2p58_C 96 ARSQ-DPRIQTFV 107 (116)
T ss_dssp TTCC-CHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 6665 44444443
No 242
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.98 E-value=4.6 Score=29.20 Aligned_cols=88 Identities=11% Similarity=-0.013 Sum_probs=62.0
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHH
Q 008097 94 TNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKS 173 (577)
Q Consensus 94 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 173 (577)
....++|..+-+.+...|. ...+--.-+..+...|++++|..+.+...-||...|.+|-. .+.|..+++...+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 4567788788777776643 22222223445778899999999999999999999988754 4678888888888788
Q ss_pred HhCCCCCCHhhHH
Q 008097 174 FSFGFVPDVVTIT 186 (577)
Q Consensus 174 ~~~g~~~~~~~~~ 186 (577)
..+| .|....|.
T Consensus 95 a~sg-~p~~q~Fa 106 (115)
T 2uwj_G 95 GGSS-DPALADFA 106 (115)
T ss_dssp HTCS-SHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7666 44444443
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.48 E-value=20 Score=33.02 Aligned_cols=25 Identities=16% Similarity=-0.085 Sum_probs=16.6
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHH
Q 008097 307 RISPYNSVLYGLYRENQQDEALEYL 331 (577)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~ 331 (577)
|+..-..+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4455556667777777777776665
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.17 E-value=2.1 Score=44.65 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=23.7
Q ss_pred HhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHH
Q 008097 422 CRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQM 475 (577)
Q Consensus 422 ~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 475 (577)
...|+++-|+.+-++... +.| +-.+|..|..+|...|+++.|+-.++.+
T Consensus 348 l~K~~~elAL~~Ak~AV~-----~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 348 LNRGDYELALGVSNTSTE-----LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHTTCHHHHHHHHHHHHH-----HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hccCcHHHHHHHHHHHHh-----cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344555555555443333 344 3445555555555555555555555544
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.72 E-value=2.5 Score=40.46 Aligned_cols=71 Identities=11% Similarity=0.034 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc---cCCCCCCCcccHH
Q 008097 381 CLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRG---IGRGSLPGSGHYS 453 (577)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~---~~~~~~p~~~~~~ 453 (577)
.++..+...|++++|+..+..+.... +-+...+..++.++.+.|+..+|++.|+ .... .+.|+.|...+-.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~-~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYR-RVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHH-HHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHhCCCCCHHHHH
Confidence 34455555566666655555555421 2244455556666666666666655555 3221 1345666555443
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.44 E-value=13 Score=35.51 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=25.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008097 277 LIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQME 335 (577)
Q Consensus 277 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 335 (577)
++..+...|+.+++...+..+.... +.+...|..+|.++.+.|+..+|++.|+...
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~---P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444444331 2233444445555555555555555444443
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.34 E-value=22 Score=32.46 Aligned_cols=164 Identities=12% Similarity=0.106 Sum_probs=82.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHH-HHhhhcCChhHHHHH----HHHHHHcCCCCChhhHHHHHHHHHhcCChh-HHHHHHH
Q 008097 187 KVLELLCSVGRVMDAVEILEES-GEQGRLGKVKGGCRF----LKEMERKGCLPNVDTYNILISSYCETGVLD-SALDVFN 260 (577)
Q Consensus 187 ~ll~~~~~~g~~~~a~~~~~~~-~~~~~~g~~~~a~~~----~~~~~~~~~~p~~~~~~~li~~~~~~g~~~-~A~~~~~ 260 (577)
++..=|.+.+++++|.+++..- ....+.|+...|-++ .+...+.+++++......++..+.....-+ .=.++.+
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~ 117 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVIT 117 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHH
Confidence 3444555566666666654332 222444555444443 444455677777777777776665543222 1123333
Q ss_pred HHHH----CC--CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhc---CCHHHHHHHH
Q 008097 261 DMKI----DG--ISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRE---NQQDEALEYL 331 (577)
Q Consensus 261 ~m~~----~g--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~ 331 (577)
.+.+ .| ..-++.....+...|.+.|++.+|+.-|-.-... +...+..++.-+.+. |...++--+.
T Consensus 118 ~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~------s~~~~a~~l~~w~~~~~~~~~~e~dlf~ 191 (312)
T 2wpv_A 118 GMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHD------SMIKYVDLLWDWLCQVDDIEDSTVAEFF 191 (312)
T ss_dssp HHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHH------HHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCc------cHHHHHHHHHHHHHhcCCCCcchHHHHH
Confidence 3332 22 1235566667777777777777777665421110 233344444444333 4443332111
Q ss_pred HHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHH
Q 008097 332 KQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIE 369 (577)
Q Consensus 332 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 369 (577)
.+ .+-.|.-.|++..|..+|+...+
T Consensus 192 ~R-------------aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 192 SR-------------LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HH-------------HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HH-------------HHHHHHHhcCHHHHHHHHHHHHH
Confidence 11 12335556777777777776543
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.83 E-value=25 Score=39.10 Aligned_cols=166 Identities=11% Similarity=0.035 Sum_probs=91.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhh-hcCChhHHHHHHHHHHHc
Q 008097 152 ILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQG-RLGKVKGGCRFLKEMERK 230 (577)
Q Consensus 152 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~g~~~~a~~~~~~~~~~ 230 (577)
.++..+.+.+..+-+.++.... +.+...--.+..++...|++++|.++|.++.... ..........-+..+...
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3445556666666665544332 2344443445667788888888888886543221 000000111112222221
Q ss_pred CCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC
Q 008097 231 GCL--PNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWN----FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGS 304 (577)
Q Consensus 231 ~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 304 (577)
... .-..-|..++..+-+.+.++.+.++-+...+...+-+ ...|..+.+.+...|++++|...+..+... ..
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~--~~ 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT--PL 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS--SS
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH--HH
Confidence 111 1123466777788888888888877776654321111 124677888888888888888888776643 11
Q ss_pred CCCcccHHHHHHHHHhcCCHHH
Q 008097 305 KGRISPYNSVLYGLYRENQQDE 326 (577)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~~~~ 326 (577)
-......++..++..|..+.
T Consensus 970 --r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 --KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp --CHHHHHHHHHHHHHHCCHHH
T ss_pred --HHHHHHHHHHHHHhCCChhh
Confidence 23445666666666665543
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.05 E-value=25 Score=32.07 Aligned_cols=21 Identities=5% Similarity=-0.284 Sum_probs=15.3
Q ss_pred HHHHHcCChhHHHHHHHHHHH
Q 008097 457 KALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~m~~ 477 (577)
--|.-.|++..|..+++...+
T Consensus 196 L~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 196 FNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 345567888888888887653
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.61 E-value=34 Score=33.23 Aligned_cols=93 Identities=13% Similarity=0.015 Sum_probs=43.9
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhccCCCCCC---cccHHHHHHHHHhcCCHHHHHHHHHHHhh----cCCCc----eehH
Q 008097 277 LIRGLCSGGRIDDGLKILQLMEDSKEGSKGR---ISPYNSVLYGLYRENQQDEALEYLKQMEK----LFPRA----VDRS 345 (577)
Q Consensus 277 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~p~~----~~~~ 345 (577)
|...|...|++.+|..++..+.....+.... +..+...+..|...+++.+|..++.++.. ..+.+ .-+.
T Consensus 143 La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~ 222 (445)
T 4b4t_P 143 LVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYN 222 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHH
Confidence 4444555555555555555544321111111 12344555555666666666655555432 11111 1123
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHH
Q 008097 346 LKILGFCVDGNVEDAKRCFDQMIE 369 (577)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~~~ 369 (577)
..+..+...+++.+|.+.|.++..
T Consensus 223 ~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 223 LLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344455566666666666666644
No 251
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.58 E-value=30 Score=31.86 Aligned_cols=21 Identities=5% Similarity=-0.070 Sum_probs=15.1
Q ss_pred HHHHHcCChhHHHHHHHHHHH
Q 008097 457 KALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~m~~ 477 (577)
--|.-.|++..|..+++...+
T Consensus 195 L~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 346667888888887776664
No 252
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=82.47 E-value=56 Score=34.96 Aligned_cols=260 Identities=10% Similarity=0.029 Sum_probs=137.5
Q ss_pred hhcCChhHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-------CcCHHHHHHHHHHHH
Q 008097 212 GRLGKVKGGCRFLKEMERKG--CLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGI-------SWNFVTYDTLIRGLC 282 (577)
Q Consensus 212 ~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~~~~~~~~~ll~~~~ 282 (577)
...|+.++++.+++.....+ -.+....-..+.-+....|..+++..++.......- .+....-..+.-+.+
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 35567777777666554321 111122333344455666766678887777654311 011122222323333
Q ss_pred cCCC-hHHHHHHHHHHHhccCCCCCCcc----cHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCcee-hHHHHHHhhhcCC
Q 008097 283 SGGR-IDDGLKILQLMEDSKEGSKGRIS----PYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVD-RSLKILGFCVDGN 356 (577)
Q Consensus 283 ~~g~-~~~a~~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~ 356 (577)
-.|. -+++.+.+..+...+ +.. .--+|...+.-.|+.+-...++..+.+...+.+. ...+.-++...|+
T Consensus 465 ~~GS~~eev~e~L~~~L~dd-----~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 465 AMGSANIEVYEALKEVLYND-----SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp STTCCCHHHHHHHHHHHHTC-----CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred hcCCCCHHHHHHHHHHHhcC-----CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 3332 235555555555431 111 1113333455667777777777776654333222 2223334557788
Q ss_pred HHHHHHHHHHHHHcCCCCCHh-hHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008097 357 VEDAKRCFDQMIEEGGVPNVV-IYD---CLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALK 432 (577)
Q Consensus 357 ~~~A~~~~~~~~~~~~~p~~~-~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 432 (577)
.+.+..+.+.+... .+.. -|. ++.-+|+-.|+.....++++.+.... ..+..-...+.-++...|+.+.+.+
T Consensus 540 ~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 540 QELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred hHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 88888888888763 2322 233 33445667778766666888888642 2233223333334445677777777
Q ss_pred HHHHhhcccCCCCCCCcccHHHHHHHHHHcCCh-hHHHHHHHHHHHCCCCCCHHHH
Q 008097 433 LVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGF-QSASMLLVQMVGKGILPDYLTW 487 (577)
Q Consensus 433 ~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~ 487 (577)
+++ .+. .+ ..|....-.++.-+...+|.. .+|.+++..+. -.+|..+=
T Consensus 616 lv~-~L~--~~-~d~~VR~gAalALGli~aGn~~~~aid~L~~L~---~D~d~~Vr 664 (963)
T 4ady_A 616 IVQ-LLS--KS-HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT---KDPVDFVR 664 (963)
T ss_dssp HTT-TGG--GC-SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH---TCSSHHHH
T ss_pred HHH-HHH--hc-CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc---cCCCHHHH
Confidence 777 555 22 245444444454455555654 67888999987 34565443
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.51 E-value=4 Score=33.09 Aligned_cols=61 Identities=3% Similarity=-0.113 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC-CCCcCH-------HHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKID-GISWNF-------VTYDTLIRGLCSGGRIDDGLKILQLMED 299 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 299 (577)
+-.-+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...+++..|...|++..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 334466677778888887776664432 112331 2456667778888888888888887643
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.47 E-value=37 Score=37.71 Aligned_cols=82 Identities=11% Similarity=0.033 Sum_probs=48.0
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008097 344 RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNV----VIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLS 419 (577)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 419 (577)
|..++..|.+.+.++.+.++-...++...+.+. ..|..+..++...|++++|...+-.+.+...+ ...+..++.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 344555566667777777666665554211111 25777777778888888888777777654433 234555555
Q ss_pred HHHhcCCH
Q 008097 420 GLCRQGNV 427 (577)
Q Consensus 420 ~~~~~g~~ 427 (577)
.++..|..
T Consensus 980 ~lce~~~~ 987 (1139)
T 4fhn_B 980 QLTKQGKI 987 (1139)
T ss_dssp HHHHHCCH
T ss_pred HHHhCCCh
Confidence 55544443
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=78.93 E-value=18 Score=28.41 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=11.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 008097 382 LIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+.-++.+.|++++|.++.+.+.+
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 33444455555555555555544
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.33 E-value=12 Score=36.22 Aligned_cols=61 Identities=15% Similarity=-0.038 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGI--SWNFVTYDTLIRGLCSGGRIDDGLKILQLME 298 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 298 (577)
++..+...|.+.|+++.|.+.|.++..... .--...+-.++..+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 445566666666666666666666654311 1122334444445555555555555555443
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=76.15 E-value=20 Score=26.15 Aligned_cols=48 Identities=10% Similarity=0.072 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008097 61 IDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKS 109 (577)
Q Consensus 61 ~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 109 (577)
.-+.++-+. .+....+-|++....+.+++|.|.+++..|.++++-++.
T Consensus 26 ~~e~rrglN-~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMN-TLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHH-HHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444 444455556666666666666666666666666655544
No 258
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=75.84 E-value=20 Score=27.78 Aligned_cols=71 Identities=15% Similarity=0.100 Sum_probs=37.0
Q ss_pred CcCHHHHHHHHHHHHcCCC---hHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 008097 268 SWNFVTYDTLIRGLCSGGR---IDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 268 ~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
.|+..|--...-++.++.+ ..+++.+++.+.+. +..-....+--+.-++.+.|++++|++..+.+.+..|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 4455554444445555543 34566666666554 11011223444555666666666666666666665554
No 259
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=74.63 E-value=78 Score=32.19 Aligned_cols=115 Identities=10% Similarity=-0.008 Sum_probs=65.2
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHHHH----HHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHH
Q 008097 250 GVLDSALDVFNDMKIDGISWNFVTYD----TLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQD 325 (577)
Q Consensus 250 g~~~~A~~~~~~m~~~g~~~~~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 325 (577)
.+++.|...+....+.+ ..+..... .+.......+...++...+...... . .+.....-.+....+.|+++
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--S--QSTSLIERRVRMALGTGDRR 302 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--C--CCHHHHHHHHHHHHHHTCHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--C--CChHHHHHHHHHHHHCCCHH
Confidence 37788888888876543 22333222 2222333344355666666664432 1 12222333334445678999
Q ss_pred HHHHHHHHHhhcCCCcee-hHHHHHHhhhcCCHHHHHHHHHHHHH
Q 008097 326 EALEYLKQMEKLFPRAVD-RSLKILGFCVDGNVEDAKRCFDQMIE 369 (577)
Q Consensus 326 ~A~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~ 369 (577)
.|...|..|....++... ..=+..++...|+.++|..+|..+..
T Consensus 303 ~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 303 GLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999888887653222111 12234456678888899998888875
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=72.49 E-value=21 Score=31.64 Aligned_cols=113 Identities=12% Similarity=0.163 Sum_probs=72.7
Q ss_pred HHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhc
Q 008097 349 LGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAS----TFNTVLSGLCRQ 424 (577)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~ 424 (577)
....+.|++++|+.....-++. -+-|...-..++..+|-.|++++|.+-++...+ +.|+.. +|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHHHHH----
Confidence 3456788999998888888776 345777778888999999999999988888876 345543 34444432
Q ss_pred CCHHHHH-HHHHHhhcccCCCCCC-----CcccHHHHHHHHH--HcCChhHHHHHHHHHHHC
Q 008097 425 GNVGTAL-KLVEEDMRGIGRGSLP-----GSGHYSPLIKALC--EKGGFQSASMLLVQMVGK 478 (577)
Q Consensus 425 g~~~~a~-~~~~~~m~~~~~~~~p-----~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 478 (577)
+..+ ++|. -+-.| ...-...++.++. ..|+.++|.++..++.+.
T Consensus 78 ---E~~R~~vfa-------G~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ---AQARKDFAQ-------GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHHHHTT-------SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHc-------CCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1111 1222 11222 2234455555554 458889998888888653
No 261
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=72.43 E-value=21 Score=28.85 Aligned_cols=59 Identities=12% Similarity=0.003 Sum_probs=35.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC-CCCC-------HhhHHHHHHHHHhcCCHhHHHHHHHHHHHh
Q 008097 153 LICAYCKEENLVNALVLLEKSFSFG-FVPD-------VVTITKVLELLCSVGRVMDAVEILEESGEQ 211 (577)
Q Consensus 153 li~~~~~~~~~~~A~~~~~~m~~~g-~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 211 (577)
-+..+...+.++.|+-+.+.+.... ..|+ ..++..+.+++...+++..|...|+++++.
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3445555666666655554433221 1222 135566778888889999999888876654
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=71.95 E-value=34 Score=26.85 Aligned_cols=71 Identities=17% Similarity=0.112 Sum_probs=36.2
Q ss_pred CcCHHHHHHHHHHHHcCCC---hHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 008097 268 SWNFVTYDTLIRGLCSGGR---IDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 268 ~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
.|+..+-....-++.++.+ ..+++.+++.+....+ .......-.+.-++.+.|++++|+++.+.+.+..|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~--~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC--STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc--cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4455554445555555543 3456666666655411 111122333445566666666666666666665554
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.40 E-value=9.6 Score=33.72 Aligned_cols=68 Identities=25% Similarity=0.440 Sum_probs=44.5
Q ss_pred HHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHH
Q 008097 420 GLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPD----YLTWNSLLICL 494 (577)
Q Consensus 420 ~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~ 494 (577)
...+.|.+++++......++ -.| |...-..++..||-.|+|++|.+-++...+ +.|+ ...|..+|.|-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR-----~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~lI~aE 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIK-----ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAA 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHH-----TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHH-----hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHHHHHH
Confidence 34566777777777775555 355 677777777777777888777777777663 3343 33456666654
No 264
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=68.61 E-value=39 Score=26.16 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=10.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHH
Q 008097 453 SPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 453 ~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
-.+.-++.+.|++++|.+..+.+.
T Consensus 82 YyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 82 YYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333334444444444444444444
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=68.51 E-value=39 Score=26.18 Aligned_cols=46 Identities=11% Similarity=0.118 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008097 63 LARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKS 109 (577)
Q Consensus 63 ~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 109 (577)
+.++-+. .+....+-|++....+.+++|.+.+++..|.++++-++.
T Consensus 71 ElrrglN-~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 71 ELRKGMN-TLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHH-HHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3333333 334444555555555555555555555555555555544
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.80 E-value=50 Score=27.68 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=42.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 008097 354 DGNVEDAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPI 410 (577)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 410 (577)
++...++..+|..|..+|+--. ..-|......+...|++.+|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4556788888888888765433 45577777778888888888888888888777774
No 267
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.15 E-value=71 Score=27.99 Aligned_cols=19 Identities=5% Similarity=0.004 Sum_probs=10.0
Q ss_pred HHHHHhccCChhHHHHHHH
Q 008097 17 VIRGLGRARMINDVVKATD 35 (577)
Q Consensus 17 l~~~~~~~g~~~~a~~~~~ 35 (577)
.+...++.|+++....+++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3444556666655544443
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.28 E-value=1.4e+02 Score=28.68 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=11.2
Q ss_pred HhcCCHHHHHHHHHHHH
Q 008097 387 CQEERVREASELMKEMT 403 (577)
Q Consensus 387 ~~~g~~~~A~~~~~~m~ 403 (577)
...+++.+|...|-+..
T Consensus 219 l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 219 LAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp GGTSCHHHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHHHh
Confidence 34567777777776655
No 269
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.18 E-value=43 Score=32.97 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=45.7
Q ss_pred cchHHHHHHHHHhcCCHhHHHHHHHhccCCCc-eeHHH-------HHHHHHhcCChHHHHHHHHHHHhC
Q 008097 116 SVIYNTLIHSLCKNGKVGRARSLMSDMEEPND-VTFSI-------LICAYCKEENLVNALVLLEKSFSF 176 (577)
Q Consensus 116 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~-------li~~~~~~~~~~~A~~~~~~m~~~ 176 (577)
..++|.+++.|...+.++.|..+..+..-|.. .+-+. +...+.-.+++.+|.+.|......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34678888999999999999999999876533 33333 234566788999999988887654
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.52 E-value=59 Score=27.27 Aligned_cols=55 Identities=20% Similarity=0.058 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 008097 427 VGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDY 484 (577)
Q Consensus 427 ~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 484 (577)
..++..+|. .|. ..||-- -...|......+-..|++++|.++++.-.+.+-+|-.
T Consensus 95 ~~~p~~if~-~L~--~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 95 FHESENTFK-YMF--NKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp HHHHHHHHH-HHH--HHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cCCHHHHHH-HHH--HCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 445555665 555 233333 3344555666666666666666666666655555543
No 271
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=55.55 E-value=2.2e+02 Score=30.54 Aligned_cols=282 Identities=11% Similarity=0.032 Sum_probs=142.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHhcCCHhHHHHHHHHHHHhhh--cCChhHHHHHHHHHHHcC
Q 008097 156 AYCKEENLVNALVLLEKSFSFGFVPDVV--TITKVLELLCSVGRVMDAVEILEESGEQGR--LGKVKGGCRFLKEMERKG 231 (577)
Q Consensus 156 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~g~~~~a~~~~~~~~~~~ 231 (577)
+....|+.++++.++......+...+.. .-..+.-+....|...++..++...+.... .|+-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~------------- 449 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDED------------- 449 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHH-------------
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccc-------------
Confidence 4667788888888777654321112222 222223334445544445444332211100 00000
Q ss_pred CCCChhhHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCcCHHHHH--HHHHHHHcCCChHHHHHHHHHHHhccCCCCCCc
Q 008097 232 CLPNVDTYNILISSYCETGV-LDSALDVFNDMKIDGISWNFVTYD--TLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRI 308 (577)
Q Consensus 232 ~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 308 (577)
.+.+..-.++--+.+-.|. -+++...+..+.... .+...... ++...+.-.|+.+....++..+.+.. ..++
T Consensus 450 -~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~v 524 (963)
T 4ady_A 450 -VDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNI 524 (963)
T ss_dssp -HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHH
T ss_pred -cHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHH
Confidence 0112222333333433443 245666666665432 11111122 23334556677777777777766531 1122
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehH---HHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 008097 309 SPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRS---LKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHA 385 (577)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 385 (577)
.-...+.-++...|+.+.+..+.+.+........-|. ++.-+|+..|+.....+++..+... ...++.....+.-+
T Consensus 525 rR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLG 603 (963)
T 4ady_A 525 TRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALG 603 (963)
T ss_dssp HHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHH
Confidence 2233333445577888888888888776433233333 3445788889988888899888874 22233333333344
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcC
Q 008097 386 YCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNV-GTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKG 463 (577)
Q Consensus 386 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g 463 (577)
+...|+.+.+.++++.+.+.+ .|...--..+.-+....|.. .++...+. .+. -.++..+-..-+-+++.-|
T Consensus 604 lI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~-~L~-----~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 604 FVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD-PLT-----KDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH-HHH-----TCSSHHHHHHHHHHHHHHS
T ss_pred hhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH-HHc-----cCCCHHHHHHHHHHHHHHh
Confidence 555677777777777666543 45544333344444444443 56777887 554 2455555444454555433
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=55.20 E-value=58 Score=23.67 Aligned_cols=78 Identities=18% Similarity=0.081 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHH
Q 008097 391 RVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASM 470 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 470 (577)
..+||..+-+.+...+. ....-.+-+..+...|++++|..+.+ .+. .||.+.|..+. -.|.|..+++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~-~~c------~pdlepw~ALc--e~rlGl~s~le~ 89 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAH-GNP------WPALEPWFALC--EWHLGLGAALDR 89 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGT-TCC------CGGGHHHHHHH--HHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcC-CCC------CchHHHHHHHH--HHhcccHHHHHH
Confidence 45667666666665442 22222223345667788888877766 332 67777776653 467777777777
Q ss_pred HHHHHHHCC
Q 008097 471 LLVQMVGKG 479 (577)
Q Consensus 471 ~~~~m~~~~ 479 (577)
-+.++..+|
T Consensus 90 rL~~la~sg 98 (115)
T 2uwj_G 90 RLAGLGGSS 98 (115)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHHhCC
Confidence 776776544
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=54.70 E-value=59 Score=23.66 Aligned_cols=78 Identities=17% Similarity=0.096 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHH
Q 008097 391 RVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASM 470 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 470 (577)
..+||..+-+.+...+. ....-.+-+..+...|++++|..+.+ .+. .||.+.|..|. -.|.|..+++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~-~~c------~pdlepw~ALc--e~rlGl~s~le~ 90 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGN-KLA------YPDLEPWLALC--EYRLGLGSALES 90 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHT-TSC------CGGGHHHHHHH--HHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcC-CCC------CchHHHHHHHH--HHhcccHHHHHH
Confidence 45666666666665432 22222222345567788888877776 332 67777776553 456777777776
Q ss_pred HHHHHHHCC
Q 008097 471 LLVQMVGKG 479 (577)
Q Consensus 471 ~~~~m~~~~ 479 (577)
-+.++..+|
T Consensus 91 rL~~la~sg 99 (116)
T 2p58_C 91 RLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhCC
Confidence 666665443
No 274
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=54.47 E-value=1e+02 Score=26.20 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=10.8
Q ss_pred HHhcCChhHHHHHHHHHHHCCC
Q 008097 246 YCETGVLDSALDVFNDMKIDGI 267 (577)
Q Consensus 246 ~~~~g~~~~A~~~~~~m~~~g~ 267 (577)
.+..|+.+.+..+++.+.+.|.
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCC
Confidence 3444555555555554444443
No 275
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=52.97 E-value=1.5e+02 Score=27.95 Aligned_cols=238 Identities=9% Similarity=-0.033 Sum_probs=135.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCc---CHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCCCCcccH
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKID-GISW---NFVTYDTLIRGLCSGG-RIDDGLKILQLMEDSKEGSKGRISPY 311 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~---~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~ 311 (577)
.....|...|.+.|+.++...++.....- +.-| .......+++.+.... ..+.-.++.....+.... .-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~---~~r~f 96 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ---EKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH---TTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH---HHHHH
Confidence 34567888899999999999988876532 1111 3345667888887653 334434444333321000 12233
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHhhc--CCCcee-----hHHHHHHhhhcCCHHHHHHHHHHHHHc--CCCCCH
Q 008097 312 ------NSVLYGLYRENQQDEALEYLKQMEKL--FPRAVD-----RSLKILGFCVDGNVEDAKRCFDQMIEE--GGVPNV 376 (577)
Q Consensus 312 ------~~li~~~~~~g~~~~A~~~~~~~~~~--~p~~~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~ 376 (577)
..++..|...|++.+|.+++.++.+. ..|..+ +..-+.+|...+++.++...+...... .+.+++
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 25788999999999999999998762 222221 333456788999999999999887654 222333
Q ss_pred hhHH----HHHHHHH-hcCCHHHHHHHHHHHHh----CCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHh-hcccCC
Q 008097 377 VIYD----CLIHAYC-QEERVREASELMKEMTG----HGYLPI---ASTFNTVLSGLCRQGNVGTALKLVEED-MRGIGR 443 (577)
Q Consensus 377 ~~~~----~li~~~~-~~g~~~~A~~~~~~m~~----~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~-m~~~~~ 443 (577)
..-. +-...+. ..+++.+|...|-+..+ .| .|. ...|..+. +. -.++..+-..++... .. .+
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL~-aL-l~~~r~el~~~l~~~~~~--~~ 251 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLLC-KI-MLGQSDDVNQLVSGKLAI--TY 251 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHH-HH-HTTCGGGHHHHHHSHHHH--TT
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHHH-HH-HcCCHHHHHHHhcccccc--cc
Confidence 3221 2223345 68899999888877642 11 121 11232222 22 223333333333211 12 22
Q ss_pred CCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 008097 444 GSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYL 485 (577)
Q Consensus 444 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 485 (577)
..|....+..++.+| +.|++.+..++++.... .+..|+.
T Consensus 252 -~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 252 -SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp -CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred -CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 345555566666654 45677777777776543 2566664
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=52.96 E-value=1.2e+02 Score=26.52 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=10.3
Q ss_pred HHHHHHhcCCHhHHHHHHHh
Q 008097 122 LIHSLCKNGKVGRARSLMSD 141 (577)
Q Consensus 122 li~~~~~~g~~~~A~~~~~~ 141 (577)
.+...+..|+.+-+..+++.
T Consensus 42 ~L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 42 PLHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 34444555665555555544
No 277
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=52.42 E-value=98 Score=25.50 Aligned_cols=79 Identities=13% Similarity=0.073 Sum_probs=32.0
Q ss_pred CcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 008097 115 NSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCS 194 (577)
Q Consensus 115 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 194 (577)
+..+-...+.++.+.|+.+....+.+.+..+|...-...+.++.+.+.. ++...+..+.. .++...-...+.++.+
T Consensus 89 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGE 164 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 4444444444444444443333333333334433333334444444432 23333333332 2344444444444444
Q ss_pred cCC
Q 008097 195 VGR 197 (577)
Q Consensus 195 ~g~ 197 (577)
.|.
T Consensus 165 ~~~ 167 (201)
T 3ltj_A 165 IGG 167 (201)
T ss_dssp HCS
T ss_pred hCc
Confidence 443
No 278
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=50.17 E-value=1.1e+02 Score=25.43 Aligned_cols=154 Identities=13% Similarity=0.029 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHH
Q 008097 44 PSLKIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLI 123 (577)
Q Consensus 44 ~~~~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 123 (577)
++...-...+..+.......+...+. .+.. .+|...-...+.++.+.++.+. ...+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHH
Confidence 45555555555555552233444444 2222 3465555666677777766433 333334443 35666777777
Q ss_pred HHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 008097 124 HSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVE 203 (577)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 203 (577)
.++.+.|+.+....+.+.+..++...-...+.++.+.+.. ++...+..+.. .++..+-...+.++.+.+.. .+..
T Consensus 103 ~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~ 177 (211)
T 3ltm_A 103 VALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGGE-RVRA 177 (211)
T ss_dssp HHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-HHHH
T ss_pred HHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-hHHH
Confidence 7777777766555566656566666666666666666654 34555555543 45666666677777777663 3444
Q ss_pred HHHHHHH
Q 008097 204 ILEESGE 210 (577)
Q Consensus 204 ~~~~~~~ 210 (577)
.+..+..
T Consensus 178 ~L~~~l~ 184 (211)
T 3ltm_A 178 AMEKLAE 184 (211)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444443
No 279
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=47.52 E-value=1.2e+02 Score=25.62 Aligned_cols=19 Identities=16% Similarity=0.294 Sum_probs=9.1
Q ss_pred HHHHHhcCCHhHHHHHHHh
Q 008097 123 IHSLCKNGKVGRARSLMSD 141 (577)
Q Consensus 123 i~~~~~~g~~~~A~~~~~~ 141 (577)
+...++.|+.+-+..+++.
T Consensus 46 L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHc
Confidence 3344455555555444444
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=46.05 E-value=1.1e+02 Score=24.28 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 008097 359 DAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPI 410 (577)
Q Consensus 359 ~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 410 (577)
++..+|..|..+|+--. ..-|......+...|++.+|.++|+.-++.+-.|-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 36777777777654433 44566666777777888888888877777666663
No 281
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=44.91 E-value=2.1e+02 Score=27.13 Aligned_cols=52 Identities=13% Similarity=0.182 Sum_probs=25.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCcch--HHHHHHHHHhcCCHhHHHHHHHhcc
Q 008097 88 MKGLCLTNRVGDGFKLLHVMKSRGVKPNSVI--YNTLIHSLCKNGKVGRARSLMSDME 143 (577)
Q Consensus 88 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~ 143 (577)
+...++.|+.+-. +.+.+.|..++... ..+.+...++.|+.+-+..+++.-.
T Consensus 84 L~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 137 (437)
T 1n11_A 84 LHCAARIGHTNMV----KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 137 (437)
T ss_dssp HHHHHHHTCHHHH----HHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHH----HHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Confidence 3344455665433 33344454433221 1223444556677777766666543
No 282
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=44.54 E-value=2.8e+02 Score=28.42 Aligned_cols=42 Identities=21% Similarity=0.363 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhc
Q 008097 118 IYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKE 160 (577)
Q Consensus 118 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 160 (577)
+| ++|-.+.|+|++++|.++.++... .-...+...+..|+.+
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 45 567778999999999999988753 2224777777888743
No 283
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=44.38 E-value=1.1e+02 Score=25.02 Aligned_cols=154 Identities=14% Similarity=0.033 Sum_probs=75.9
Q ss_pred HHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCHh---hHHHHHHHHHhcCC
Q 008097 20 GLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDDY---TYAILMKGLCLTNR 96 (577)
Q Consensus 20 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~ 96 (577)
..+..|+.+....++..-...--.++..-++.+..+....+.+-+..++ +.|..++.. ..+. +...+..|+
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-----~~g~~~~~~~~~g~t~-l~~A~~~~~ 84 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI-----DRGADINLQNSISDSP-YLYAGAQGR 84 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-----HTTCCTTCCCTTSCCH-HHHHHHTTC
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-----HcCCCCCCCCCCCCCH-HHHHHHcCC
Confidence 3456788877777665432100112233334444444333654443333 345444422 2233 344456677
Q ss_pred HhHHHHHHHHHHhCCCCCCcch--HHHHHHHHHhcCCHhHHHHHHHhc-cC---CCceeHHHHHHHHHhcCChHHHHHHH
Q 008097 97 VGDGFKLLHVMKSRGVKPNSVI--YNTLIHSLCKNGKVGRARSLMSDM-EE---PNDVTFSILICAYCKEENLVNALVLL 170 (577)
Q Consensus 97 ~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~~~~~~~A~~~~ 170 (577)
.+-...+++. .+..++... -.+.+...++.|+.+-+..+++.- .. +|..-++.+..+.........-.++.
T Consensus 85 ~~~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 85 TEILAYMLKH---ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp HHHHHHHHHH---SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred HHHHHHHHhc---cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence 6655555433 232222211 122344566788888888888775 22 34444555555444333333345666
Q ss_pred HHHHhCCCCCCH
Q 008097 171 EKSFSFGFVPDV 182 (577)
Q Consensus 171 ~~m~~~g~~~~~ 182 (577)
+.+.+.|..++.
T Consensus 162 ~~Ll~~ga~~~~ 173 (201)
T 3hra_A 162 KLLMENGADQSI 173 (201)
T ss_dssp HHHHHTTCCTTC
T ss_pred HHHHHCCCCCCc
Confidence 667777766653
No 284
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=42.59 E-value=2.2e+02 Score=26.84 Aligned_cols=167 Identities=10% Similarity=0.014 Sum_probs=95.3
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCC---CHhhHHHHHHHHHhc-CCHhHHHHHHHHHHHhhhcCChhHHHHH
Q 008097 149 TFSILICAYCKEENLVNALVLLEKSFSFG-FVP---DVVTITKVLELLCSV-GRVMDAVEILEESGEQGRLGKVKGGCRF 223 (577)
Q Consensus 149 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~~---~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~g~~~~a~~~ 223 (577)
+...|...|.+.|+.++..+++......= .-| .......++..+... +..+.-.++....++
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~------------- 87 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIE------------- 87 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------------
Confidence 45567788889999999888888763210 011 123344555555543 222222233222222
Q ss_pred HHHHHHcCCCCChhhH------HHHHHHHHhcCChhHHHHHHHHHHHCCCCcC-----HHHHHHHHHHHHcCCChHHHHH
Q 008097 224 LKEMERKGCLPNVDTY------NILISSYCETGVLDSALDVFNDMKIDGISWN-----FVTYDTLIRGLCSGGRIDDGLK 292 (577)
Q Consensus 224 ~~~~~~~~~~p~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~ll~~~~~~g~~~~a~~ 292 (577)
.... +-.+| .-++..|...|++.+|..++.++.+.--+.| ...+..-+..|...+++.++..
T Consensus 88 --~a~~-----~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~ 160 (394)
T 3txn_A 88 --WAKQ-----EKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARA 160 (394)
T ss_dssp --HHHH-----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --HHHH-----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHH
Confidence 1111 12233 2577888999999999999988876421222 2235556677888899999998
Q ss_pred HHHHHHhccCCCCCCcccHH----HHHHHHH-hcCCHHHHHHHHHHHh
Q 008097 293 ILQLMEDSKEGSKGRISPYN----SVLYGLY-RENQQDEALEYLKQME 335 (577)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~----~li~~~~-~~g~~~~A~~~~~~~~ 335 (577)
.+...........+++.... .-.-.+. ..+++..|...|-+..
T Consensus 161 ~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 161 ALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 88877654222222222211 1122345 6788888887776654
No 285
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.13 E-value=1.3e+02 Score=23.91 Aligned_cols=52 Identities=21% Similarity=0.169 Sum_probs=31.3
Q ss_pred HHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 008097 430 ALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDY 484 (577)
Q Consensus 430 a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 484 (577)
+..+|. .|. ..+|-- -...|......+-..|++++|.++++.-.+.+-+|-.
T Consensus 84 p~~if~-~L~--~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 84 LHQFFE-FLY--NHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp HHHHHH-HHH--TTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHH-HHH--HCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 555565 555 344443 3445666666666777777777777776666666643
No 286
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=41.77 E-value=1.4e+02 Score=24.12 Aligned_cols=53 Identities=15% Similarity=0.222 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008097 359 DAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIA 411 (577)
Q Consensus 359 ~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 411 (577)
++..+|..|..+|+--. ..-|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 35667777777654433 345566666666777777777777777776666643
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.74 E-value=1.2e+02 Score=23.20 Aligned_cols=60 Identities=13% Similarity=0.275 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHhccCCCc---eeHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCC
Q 008097 120 NTLIHSLCKNGKVGRARSLMSDMEEPND---VTFSILICAYCKEEN--LVNALVLLEKSFSFGFV 179 (577)
Q Consensus 120 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~ 179 (577)
+.++.-|...|+.++|.+.++++..|.- +....+..++-+.+. .+.+..++..+...|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4566667777777777777777765421 222333334444322 34556666666655543
No 288
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.45 E-value=2.8e+02 Score=27.31 Aligned_cols=17 Identities=12% Similarity=0.092 Sum_probs=13.3
Q ss_pred ChhHHHHHHHHHHHCCC
Q 008097 251 VLDSALDVFNDMKIDGI 267 (577)
Q Consensus 251 ~~~~A~~~~~~m~~~g~ 267 (577)
..++|..+...|...|.
T Consensus 415 s~eeaE~iVAkmI~dG~ 431 (523)
T 4b4t_S 415 SEQTVEYMVSRAIRDGV 431 (523)
T ss_dssp HSSCHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 35678999999988774
No 289
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=40.29 E-value=68 Score=27.85 Aligned_cols=52 Identities=12% Similarity=0.033 Sum_probs=28.8
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCcch-------HHHHHHHHH--hcCCHhHHHHHHHh
Q 008097 90 GLCLTNRVGDGFKLLHVMKSRGVKPNSVI-------YNTLIHSLC--KNGKVGRARSLMSD 141 (577)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-------~~~li~~~~--~~g~~~~A~~~~~~ 141 (577)
..++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 34466777777777776666665544322 233332221 45776666666654
No 290
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=40.15 E-value=78 Score=25.46 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCHh
Q 008097 61 IDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSR--GVKPNSVIYNTLIHSLCKNGKVG 133 (577)
Q Consensus 61 ~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~ 133 (577)
...+++-+.+.+.+.|.+++.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3455555555666778776543 455677777777788888999988876 65555555445556677777543
No 291
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=39.05 E-value=1.6e+02 Score=24.06 Aligned_cols=116 Identities=8% Similarity=0.080 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 356 NVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 356 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
..+....+++.+.+.|.--|..--.+.+....+.|.+ ....+-.++...|+.++.+ ...+..+......+.|..+++
T Consensus 48 ~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~~~~I--~~al~~~~~~de~e~a~~l~~ 124 (177)
T 3e3v_A 48 HEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGIDDNIA--EDALILYTDKLQVEKGVTLAE 124 (177)
T ss_dssp CHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCCHHHH--HHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCCHHHH--HHHHHhCCchhHHHHHHHHHH
Confidence 3456778888888888876666666677766655432 2355667888889765432 222222111122455666666
Q ss_pred HhhcccCCCCCCCcccHHHHHHHHHHcC-ChhHHHHHHHHHH
Q 008097 436 EDMRGIGRGSLPGSGHYSPLIKALCEKG-GFQSASMLLVQMV 476 (577)
Q Consensus 436 ~~m~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 476 (577)
+.+. ...-.|+.....-++..+.+.| .++.+..+++.+.
T Consensus 125 Kk~~--~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 125 KLAN--RYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHH--HTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHh--hccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 4443 1111222334455666666666 4555666666654
No 292
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.87 E-value=1.1e+02 Score=24.34 Aligned_cols=60 Identities=13% Similarity=0.315 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHhccCCC---ceeHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCC
Q 008097 120 NTLIHSLCKNGKVGRARSLMSDMEEPN---DVTFSILICAYCKEEN--LVNALVLLEKSFSFGFV 179 (577)
Q Consensus 120 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~ 179 (577)
+.++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 456666777777777777777776542 1122333334433222 34455666666655543
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=38.08 E-value=1.8e+02 Score=24.38 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=9.0
Q ss_pred HHHHhcCCHhHHHHHHHh
Q 008097 124 HSLCKNGKVGRARSLMSD 141 (577)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~ 141 (577)
...+..|+.+-+..+++.
T Consensus 114 ~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 114 HLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp HHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCHHHHHHHHHhc
Confidence 334455555555555443
No 294
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=37.84 E-value=1.8e+02 Score=24.43 Aligned_cols=155 Identities=8% Similarity=-0.056 Sum_probs=76.3
Q ss_pred HHHHhccCChhHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCHhh--HHHHHHHHH
Q 008097 18 IRGLGRARMINDVVKATDLVSRFNMTPS---LKIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDDYT--YAILMKGLC 92 (577)
Q Consensus 18 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~--~~~ll~~~~ 92 (577)
+...++.|+.+.+..+++...+.+..++ ..-++.+..+....+.+-+. .+.+.|..++... -.+.+...+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~-----~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR-----LLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH-----HHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHH-----HHHHcCCCccccCCCCCCHHHHHH
Confidence 4455677898888888887665554433 22233333333333554333 3334454443221 122344445
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCcc--hHHHHHHHHHhcCCHhHHHHHHHhccCCCcee---HHHHHHHHHhcCChHHHH
Q 008097 93 LTNRVGDGFKLLHVMKSRGVKPNSV--IYNTLIHSLCKNGKVGRARSLMSDMEEPNDVT---FSILICAYCKEENLVNAL 167 (577)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~ 167 (577)
..|+.+-...+++.....++.++.. ...+.+...++.|+.+-+..+++.-..++... ..+.+...+..|+.+-+.
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 167 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHH
Confidence 6777766655555433211122211 11233445567788887777777654433221 223444455667665444
Q ss_pred HHHHHHHhCCCCCC
Q 008097 168 VLLEKSFSFGFVPD 181 (577)
Q Consensus 168 ~~~~~m~~~g~~~~ 181 (577)
.+.+.|..++
T Consensus 168 ----~Ll~~g~~~~ 177 (241)
T 1k1a_A 168 ----LLLQHGANVN 177 (241)
T ss_dssp ----HHHHTTCCTT
T ss_pred ----HHHHcCCCCC
Confidence 3344565554
No 295
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=34.82 E-value=1.2e+02 Score=23.80 Aligned_cols=61 Identities=8% Similarity=0.047 Sum_probs=36.9
Q ss_pred HHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCH
Q 008097 71 KMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKV 132 (577)
Q Consensus 71 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 132 (577)
.+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 455666665543 3345555555566667778888887766555555555555666666644
No 296
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=33.37 E-value=3e+02 Score=25.57 Aligned_cols=195 Identities=12% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHh
Q 008097 15 ITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCL 93 (577)
Q Consensus 15 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 93 (577)
..+|.-|...|+.++|...++.+......|..+.--.-...=.+. .-+.+-.++. .+.. ++-+.......+...+..
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs-~L~~-~~ls~~~i~~gf~~lle~ 135 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLS-DLCG-TVMSTNDVEKSFDKLLKD 135 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHH-TTTT-TSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHH-HHHh-CCCCHHHHHHHHHHHHHh
Q ss_pred cCC--------HhHHHHHHHHHHhCCCCCCcchH----------------------------------------------
Q 008097 94 TNR--------VGDGFKLLHVMKSRGVKPNSVIY---------------------------------------------- 119 (577)
Q Consensus 94 ~~~--------~~~a~~~~~~~~~~g~~~~~~~~---------------------------------------------- 119 (577)
..+ ++..-.++..++..++-|-.+..
T Consensus 136 ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~~vee 215 (358)
T 3eiq_C 136 LPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQPVNH 215 (358)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCCCCSSSCHHH
T ss_pred hhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCCccHHH
Q ss_pred -----HHHHHHHHhcCCHhHHHHHHHhccCCC---ceeHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 008097 120 -----NTLIHSLCKNGKVGRARSLMSDMEEPN---DVTFSILICAYCKEE--NLVNALVLLEKSFSFGFVPDVVTITKVL 189 (577)
Q Consensus 120 -----~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~g~~~~~~~~~~ll 189 (577)
+.++.-|...|+.++|.+.++++..|. .+....+..++-+.+ ..+...+++..+...|+-+.......+.
T Consensus 216 lkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 216 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_pred HHHHhcCCHh----HHHHHHHHHHHh
Q 008097 190 ELLCSVGRVM----DAVEILEESGEQ 211 (577)
Q Consensus 190 ~~~~~~g~~~----~a~~~~~~~~~~ 211 (577)
..+....++. .|..++..+...
T Consensus 296 ~vl~~ldDl~lDiP~A~~~la~~var 321 (358)
T 3eiq_C 296 RIYNEIPDINLDVPHSYSVLERFVEE 321 (358)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHhccHhhcccccHHHHHHHHHHH
No 297
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=33.02 E-value=1.3e+02 Score=23.66 Aligned_cols=61 Identities=8% Similarity=0.093 Sum_probs=36.9
Q ss_pred HHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCH
Q 008097 71 KMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKV 132 (577)
Q Consensus 71 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 132 (577)
.+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 455666664433 3445666666666777888888887766555555555555666666654
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=32.59 E-value=95 Score=25.42 Aligned_cols=13 Identities=0% Similarity=0.069 Sum_probs=5.9
Q ss_pred HhcCChhHHHHHH
Q 008097 247 CETGVLDSALDVF 259 (577)
Q Consensus 247 ~~~g~~~~A~~~~ 259 (577)
+..|+.+....++
T Consensus 13 ~~~g~~~~v~~ll 25 (201)
T 3hra_A 13 ANQRDTKKVKEIL 25 (201)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhccHHHHHHHH
Confidence 3445554444444
No 299
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=31.67 E-value=1.6e+02 Score=27.21 Aligned_cols=73 Identities=10% Similarity=0.072 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCCCCcccHHHHHHH
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGG-RIDDGLKILQLMEDSKEGSKGRISPYNSVLYG 317 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 317 (577)
...++.-|...|+.++|...++++...... .......+..+.-+.. ..+.+..++..+.+. ...+-..+..+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~------~~is~~~~~~G 86 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCA------GHLSTAQYYQG 86 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHT------TSSCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHC------CCCCHHHHHHH
Confidence 356778888889999999988887522111 1122222333332221 123444555555544 45556666665
Q ss_pred H
Q 008097 318 L 318 (577)
Q Consensus 318 ~ 318 (577)
+
T Consensus 87 f 87 (339)
T 1ug3_A 87 L 87 (339)
T ss_dssp H
T ss_pred H
Confidence 5
No 300
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.15 E-value=5.1e+02 Score=27.90 Aligned_cols=106 Identities=11% Similarity=-0.039 Sum_probs=67.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC-------------
Q 008097 382 LIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG------------- 448 (577)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~------------- 448 (577)
++..+...|.++-|.++...+ +-++..--.+..+|...|++++|..+|++... |+.++
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~----gl~~~~~~~~~~~~~~~l 886 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL----VLYSHTSQFAVLREFQEI 886 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC----TTCSSCCSCGGGHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh----hcccCcccccchhhhhhc
Confidence 556677777777655433222 22333323466778899999999999984322 22211
Q ss_pred ----------cccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHh
Q 008097 449 ----------SGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYL----TWNSLLICLSQ 496 (577)
Q Consensus 449 ----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~ 496 (577)
..-|..++..+-+.|.++.+.++-+...+.--.-|.. .|..+..+.+.
T Consensus 887 l~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 887 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACA 948 (950)
T ss_dssp HHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhh
Confidence 1257889999999999999999999888642222332 46666655543
No 301
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=30.91 E-value=2.3e+02 Score=23.57 Aligned_cols=149 Identities=10% Similarity=0.068 Sum_probs=75.9
Q ss_pred HHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCH---hhHHHHHHHHHhc
Q 008097 18 IRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDD---YTYAILMKGLCLT 94 (577)
Q Consensus 18 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~ 94 (577)
+...++.|+++....+++.-...-..++..-++.+..+....+.+-+..++ +.|..++. .-++. +...+..
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-----~~g~~~~~~~~~g~t~-L~~A~~~ 83 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL-----QLGVPVNDKDDAGWSP-LHIAASA 83 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHH-----HTTCCSCCCCTTSCCH-HHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHH-----HhCCCCCCcCCCCCCH-HHHHHHc
Confidence 555677899998888887643211122333344444444433555443333 33444432 22333 3334455
Q ss_pred CCHhHHHHHHHHHHhCCCCCCcch--HHHHHHHHHhcCCHhHHHHHHHhccCCC---ceeHHHHHHHHHhcCChHHHHHH
Q 008097 95 NRVGDGFKLLHVMKSRGVKPNSVI--YNTLIHSLCKNGKVGRARSLMSDMEEPN---DVTFSILICAYCKEENLVNALVL 169 (577)
Q Consensus 95 ~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~ 169 (577)
|+.+ +.+.+.+.|..++... ..+.+...+..|+.+-+..+++.-..++ ...++. +...+..|+.+-+.
T Consensus 84 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~-- 156 (231)
T 3aji_A 84 GXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATA-MHRAAAKGNLKMVH-- 156 (231)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHHTCHHHHH--
T ss_pred CHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcH-HHHHHHcCCHHHHH--
Confidence 6654 4455556665554322 1234555667788888877777644433 222233 34444566655443
Q ss_pred HHHHHhCCCCCC
Q 008097 170 LEKSFSFGFVPD 181 (577)
Q Consensus 170 ~~~m~~~g~~~~ 181 (577)
.+.+.|..++
T Consensus 157 --~Ll~~g~~~~ 166 (231)
T 3aji_A 157 --ILLFYKASTN 166 (231)
T ss_dssp --HHHHTTCCSC
T ss_pred --HHHhcCCCcc
Confidence 3344555444
No 302
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.26 E-value=2.8e+02 Score=24.37 Aligned_cols=209 Identities=7% Similarity=-0.017 Sum_probs=101.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcch--HHHHHHHH
Q 008097 49 FNSILDVLVKEDIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVI--YNTLIHSL 126 (577)
Q Consensus 49 ~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~ 126 (577)
++.|..+....+.+-+..+++ .|..++...-.+.+...+..|+.+-+ +.+++.|..++... ..+.+...
T Consensus 32 ~t~L~~A~~~g~~~~v~~Ll~-----~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A 102 (285)
T 3kea_A 32 HSASYYAIADNNVRLVCTLLN-----AGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYA 102 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHH-----TTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHh-----CCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHH
Confidence 334444433336655444443 34444332222344455566776544 44455565554322 12344555
Q ss_pred HhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCCHhHHH
Q 008097 127 CKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVV-TITKVLELLCSVGRVMDAV 202 (577)
Q Consensus 127 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~g~~~~a~ 202 (577)
+..|+.+-+..+++.-.. ++...|.+.+...+..|+.+-+. .+.+.|..+... .-.+.+...+..|..+-+.
T Consensus 103 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~ 178 (285)
T 3kea_A 103 VDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVS----YFLSEIPSTFDLAILLSCIHITIKNGHVDMMI 178 (285)
T ss_dssp HHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHH----HHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCccccccCCccHHHHHHHcChHHHHH
Confidence 677888888777776433 34444445556666677765443 334444433221 2333444455667776555
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008097 203 EILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLC 282 (577)
Q Consensus 203 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 282 (577)
.+++.- ..... .|..-++..+...+..|+. ++.+.+.+.|..++..... -.
T Consensus 179 ~Ll~~g-------------------ad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~~-----a~ 229 (285)
T 3kea_A 179 LLLDYM-------------------TSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANLE-----NV 229 (285)
T ss_dssp HHHHHH-------------------HHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTGG-----GG
T ss_pred HHHHcC-------------------CCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCChh-----hh
Confidence 543221 11000 1222222223333445554 3445556667666655421 24
Q ss_pred cCCChHHHHHHHHHHHh
Q 008097 283 SGGRIDDGLKILQLMED 299 (577)
Q Consensus 283 ~~g~~~~a~~~~~~~~~ 299 (577)
..|+.+-+.-+++.-.+
T Consensus 230 ~~~~~~iv~~Ll~~g~~ 246 (285)
T 3kea_A 230 LLDDAEIAKMIIEKHVE 246 (285)
T ss_dssp TTTCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHcCCC
Confidence 46777666666665443
No 303
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=29.99 E-value=2.7e+02 Score=26.92 Aligned_cols=47 Identities=6% Similarity=0.174 Sum_probs=26.1
Q ss_pred CCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC
Q 008097 95 NRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE 144 (577)
Q Consensus 95 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 144 (577)
.+.+-|.++- .+.|++--...|..-.+.+...|++++|.++--..+.
T Consensus 343 ~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~ 389 (494)
T 1bpo_A 343 QNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK 389 (494)
T ss_dssp CCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG
T ss_pred CCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc
Confidence 4444444432 2334444444455555666677777777777666554
No 304
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.95 E-value=1.3e+02 Score=23.56 Aligned_cols=47 Identities=11% Similarity=-0.087 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 008097 151 SILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGR 197 (577)
Q Consensus 151 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 197 (577)
..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 25 ~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 25 HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 33444444444555566666666655555555555555555555553
No 305
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=29.91 E-value=3.1e+02 Score=25.48 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCHhHHHHHHHhccCC
Q 008097 120 NTLIHSLCKNGKVGRARSLMSDMEEP 145 (577)
Q Consensus 120 ~~li~~~~~~g~~~~A~~~~~~~~~~ 145 (577)
..++.-|...|+.++|.+.++++..|
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p 41 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAP 41 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCc
Confidence 34555555556666666666665544
No 306
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.89 E-value=2.9e+02 Score=24.29 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=6.3
Q ss_pred HcCCChHHHHHHHH
Q 008097 282 CSGGRIDDGLKILQ 295 (577)
Q Consensus 282 ~~~g~~~~a~~~~~ 295 (577)
+..|+.+-+.-+++
T Consensus 169 ~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 169 IKNGHVDMMILLLD 182 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcChHHHHHHHHH
Confidence 34455544444443
No 307
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=29.05 E-value=2.2e+02 Score=23.79 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=10.9
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 008097 243 ISSYCETGVLDSALDVFND 261 (577)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~ 261 (577)
+...+..|+.+....++..
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4445556666666666554
No 308
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=28.86 E-value=1.8e+02 Score=24.86 Aligned_cols=53 Identities=9% Similarity=0.138 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 008097 358 EDAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPI 410 (577)
Q Consensus 358 ~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 410 (577)
+++..+|..|..+|+--. ..-|......+...|++.+|.++|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 467788888888765433 45577777777888888888888888887766673
No 309
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=28.63 E-value=2.8e+02 Score=23.84 Aligned_cols=23 Identities=17% Similarity=0.065 Sum_probs=15.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh
Q 008097 314 VLYGLYRENQQDEALEYLKQMEK 336 (577)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~ 336 (577)
-++.+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 36667777777777777766654
No 310
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=28.59 E-value=1.8e+02 Score=21.68 Aligned_cols=77 Identities=12% Similarity=0.061 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHH
Q 008097 391 RVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASM 470 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 470 (577)
.+.+|+.-+++.... .+|.....+++..+-.+ ++.++++.+..+. ..|+ .+.++.-.+..+.+.|-+++. +
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~--~~g~--~~~s~rd~~r~a~~~glI~~~-~ 73 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLE--LQGL--EARSPRAAIRGAFQVGLLPED-P 73 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHH--HHTC--CCSSHHHHHHHHHHHTSSCCC-H
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHH--HcCC--CCCCHHHHHHHHHHcCCCCcH-H
Confidence 355666666666543 35655566666555433 4555555553333 3344 355566666666666655443 3
Q ss_pred HHHHHH
Q 008097 471 LLVQMV 476 (577)
Q Consensus 471 ~~~~m~ 476 (577)
.|..|.
T Consensus 74 ~w~~m~ 79 (119)
T 1wty_A 74 FWLEML 79 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 311
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=27.81 E-value=3.3e+02 Score=24.94 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHhccCC
Q 008097 120 NTLIHSLCKNGKVGRARSLMSDMEEP 145 (577)
Q Consensus 120 ~~li~~~~~~g~~~~A~~~~~~~~~~ 145 (577)
..++.-|...|+.++|.+.++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 34566666667777777777776654
No 312
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=27.61 E-value=1.5e+02 Score=23.23 Aligned_cols=61 Identities=8% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 008097 68 YRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNG 130 (577)
Q Consensus 68 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 130 (577)
+.+.+.+.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 6 ~~~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 6 WKSDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
No 313
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.51 E-value=89 Score=22.47 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=26.8
Q ss_pred CCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHH
Q 008097 130 GKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNAL 167 (577)
Q Consensus 130 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 167 (577)
...++|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 35677777888777777777777777776666655443
No 314
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=26.08 E-value=2.9e+02 Score=23.08 Aligned_cols=19 Identities=11% Similarity=0.258 Sum_probs=9.7
Q ss_pred HHHHHhcCCHhHHHHHHHh
Q 008097 123 IHSLCKNGKVGRARSLMSD 141 (577)
Q Consensus 123 i~~~~~~g~~~~A~~~~~~ 141 (577)
+...+..|+.+-+..+++.
T Consensus 48 L~~A~~~~~~~~v~~Ll~~ 66 (237)
T 3b7b_A 48 LMEAAENNHLEAVKYLIKA 66 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHhC
Confidence 3344455666555555544
No 315
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=25.74 E-value=2.6e+02 Score=22.47 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=34.8
Q ss_pred HHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 008097 430 ALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYL 485 (577)
Q Consensus 430 a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 485 (577)
...+|. .|. ..+|-- -...|......+-..|++++|.++++.-.+.+-+|-..
T Consensus 79 p~~if~-~L~--~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 79 PLDMYS-YLH--NQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp HHHHHH-HHH--HTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHH-HHH--HCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 445555 555 344443 45567777777777888888888888877777677553
No 316
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=25.46 E-value=2.3e+02 Score=24.43 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=9.5
Q ss_pred HHHHHhcCChhHHHHHHHHH
Q 008097 243 ISSYCETGVLDSALDVFNDM 262 (577)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~m 262 (577)
++.+....++++|..++++.
T Consensus 25 LDv~IA~r~feeAv~lle~~ 44 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDI 44 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 44444444455554444443
No 317
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=24.48 E-value=1.8e+02 Score=22.34 Aligned_cols=61 Identities=10% Similarity=0.068 Sum_probs=38.2
Q ss_pred HHhhcCCCCCHhhHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCH
Q 008097 71 KMMASGVQGDDYTYAILMKGLCLTN-RVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKV 132 (577)
Q Consensus 71 ~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 132 (577)
.+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 455667665544 334566666655 6677888888888876655655555556666666654
No 318
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.32 E-value=2.3e+02 Score=21.31 Aligned_cols=43 Identities=14% Similarity=-0.168 Sum_probs=25.5
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh
Q 008097 169 LLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ 211 (577)
Q Consensus 169 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 211 (577)
+|+.+....+.|+...-..-+..+...++++.|.+++..+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4556655566555444333344455677888888887665443
No 319
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=23.38 E-value=2.9e+02 Score=23.09 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=8.1
Q ss_pred HHHhcCCHhHHHHHHHh
Q 008097 125 SLCKNGKVGRARSLMSD 141 (577)
Q Consensus 125 ~~~~~g~~~~A~~~~~~ 141 (577)
..+..|+.+-+..+++.
T Consensus 17 ~A~~~g~~~~v~~Ll~~ 33 (237)
T 3b7b_A 17 AAAEAGHVDICHMLVQA 33 (237)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHcCcHHHHHHHHHc
Confidence 34445555544444443
No 320
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=23.18 E-value=4.4e+02 Score=24.51 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=39.7
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhc--CHHHHHHHHHHHHhhcCCC
Q 008097 13 IFITVIRGLGRARMINDVVKATDLVSRFNMTPS----LKIFNSILDVLVKE--DIDLARAFYRKKMMASGVQ 78 (577)
Q Consensus 13 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~--~~~~a~~~~~~~m~~~~~~ 78 (577)
....++.-|...|+.++|.+.++.+.. |+ .+....+..++-+. ..+.+-.++. .+...++-
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~-~L~~~~~l 80 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLIS-LLKQEGIA 80 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHH-HHHHTTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHH-HHHHCCCC
Confidence 456889999999999999999999853 43 33344444444333 3455566666 55554543
No 321
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=22.03 E-value=3.3e+02 Score=22.31 Aligned_cols=17 Identities=12% Similarity=-0.033 Sum_probs=7.3
Q ss_pred CHhhHHHHHHHHHhcCC
Q 008097 80 DDYTYAILMKGLCLTNR 96 (577)
Q Consensus 80 ~~~~~~~ll~~~~~~~~ 96 (577)
|...-...+..+.+.+.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 44444444444444444
No 322
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.95 E-value=1.6e+02 Score=23.55 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCC
Q 008097 150 FSILICAYCKEENLVNALVLLEKSFSF--GFVPDVVTITKVLELLCSVGR 197 (577)
Q Consensus 150 ~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~ 197 (577)
-..++..+...+..-.|.++++.+.+. +...+..|.-..+..+...|-
T Consensus 35 R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 35 REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 344445555555555666666666555 445555555555555555553
No 323
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=21.90 E-value=1.1e+02 Score=21.18 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcchHH
Q 008097 465 FQSASMLLVQMV-GKGILPDYLTWNSLLICLSQQTTWL 501 (577)
Q Consensus 465 ~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~~~ 501 (577)
.++|...|.+|+ +.++.|+. +|...+......-.+.
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i~~DpRY~ 52 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFS-TWEKELHKIVFDPRYL 52 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSS-CHHHHHHHHHTCSGGG
T ss_pred HHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHccCCccc
Confidence 578889998888 46777776 8998888777666544
No 324
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.74 E-value=1.9e+02 Score=22.68 Aligned_cols=46 Identities=4% Similarity=0.031 Sum_probs=25.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 008097 152 ILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGR 197 (577)
Q Consensus 152 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 197 (577)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3444444445555666666666655555555555555555555553
No 325
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.73 E-value=1.4e+02 Score=21.39 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=32.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchHHHHHHHHH
Q 008097 463 GGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWLLLLLLNE 508 (577)
Q Consensus 463 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~ 508 (577)
.+.+.|.++++.++.+| +..|..++.++...+..+++.++..
T Consensus 51 t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~lL~~ 92 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLASFLRT 92 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHHHHcc
Confidence 46788999999997553 4479999999988888888776543
No 326
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.46 E-value=1.2e+02 Score=19.46 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=5.0
Q ss_pred CCHHHHHHHHH
Q 008097 425 GNVGTALKLVE 435 (577)
Q Consensus 425 g~~~~a~~~~~ 435 (577)
|+++.|+..+-
T Consensus 37 gdvd~aI~~LL 47 (59)
T 1wgl_A 37 GNKDAAINSLL 47 (59)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 44444444444
No 327
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.88 E-value=73 Score=20.48 Aligned_cols=32 Identities=9% Similarity=0.047 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHH-Hh
Q 008097 163 LVNALVLLEKSFSFGFVPDVVTITKVLELL-CS 194 (577)
Q Consensus 163 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~-~~ 194 (577)
.++|.+.|.+|++..-.+...||...++.+ ++
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~ 34 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTR 34 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccC
Confidence 367888888887665555667888888877 44
No 328
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=20.02 E-value=2.1e+02 Score=24.49 Aligned_cols=19 Identities=11% Similarity=-0.069 Sum_probs=10.4
Q ss_pred HHHHhcCCHhHHHHHHHhc
Q 008097 124 HSLCKNGKVGRARSLMSDM 142 (577)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~ 142 (577)
...+..|+.+-+..+++.-
T Consensus 98 ~~A~~~g~~~~v~~Ll~~g 116 (260)
T 3jxi_A 98 HIAIERRCKHYVELLVEKG 116 (260)
T ss_dssp HHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHhCC
Confidence 3345556666665555543
Done!