BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008100
(577 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 482 bits (1240), Expect = e-136, Method: Compositional matrix adjust.
Identities = 255/517 (49%), Positives = 325/517 (62%), Gaps = 17/517 (3%)
Query: 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDI 123
Y H IE KWQ +WE + F ++ + K YVL MFPYPSG LH+GH YT D+
Sbjct: 4 YNPHAIEAKWQRFWEE-KGFMKAKDLPGGRGKQYVLVMFPYPSG-DLHMGHLKNYTMGDV 61
Query: 124 LARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDW 183
LAR +RMQGY VLHPMGWDAFGLPAE A++ G HPK T NI + + L+ +G YDW
Sbjct: 62 LARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDW 121
Query: 184 NREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERG-G 242
+RE++T EP YY+W QWIFL++ ++GLAY+A+ VNWCP TVLANE+VV+G R
Sbjct: 122 DREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHED 181
Query: 243 HPVIRKPMRQWMLKITEYAXXXXXXXXXXXWPESVKEMQRNWIGRSEGAEMDFRVLDSDG 302
PV ++ + QW L+IT YA WPE VK MQR WIGRSEGAE+ F V
Sbjct: 182 TPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPV----- 236
Query: 303 QERDIKITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXXXXXNIEEYKNLASRKSDLERT 362
+ ++++I V+TTRPDT+FGAT+LV+APEHP + Y A RK+++ER
Sbjct: 237 EGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQ 296
Query: 363 ELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDI 422
+EKTGVF G YA NPA+GE IPIW ADYVL YGTGAIMAVPAHD RD+EFA KF +
Sbjct: 297 AEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGL 356
Query: 423 SIHSVV-MPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGN 481
I V+ P + E+AY G++VNS +G +E KVI W E+ G
Sbjct: 357 PIKKVIERPGEPLPEPLERAYEEPGIMVNSGPF------DGTESEEGKRKVIAWLEEKGL 410
Query: 482 GKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTG-TG 540
GK +V Y+LRDWL +RQRYWG PIP+V + G VP+ E ELP+ LP+L D G
Sbjct: 411 GKGRVTYRLRDWLISRQRYWGTPIPMVHCEACG-VVPVPEEELPVLLPDLKDVEDIRPKG 469
Query: 541 EPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW 577
+ PL + +TT G PA+R+T TM + S W
Sbjct: 470 KSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSW 506
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 482 bits (1240), Expect = e-136, Method: Compositional matrix adjust.
Identities = 255/517 (49%), Positives = 325/517 (62%), Gaps = 17/517 (3%)
Query: 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDI 123
Y H IE KWQ +WE + F ++ + K YVL MFPYPSG LH+GH YT D+
Sbjct: 4 YNPHAIEAKWQRFWEE-KGFMKAKDLPGGRGKQYVLVMFPYPSG-DLHMGHLKNYTMGDV 61
Query: 124 LARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDW 183
LAR +RMQGY VLHPMGWDAFGLPAE A++ G HPK T NI + + L+ +G YDW
Sbjct: 62 LARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDW 121
Query: 184 NREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERG-G 242
+RE++T EP YY+W QWIFL++ ++GLAY+A+ VNWCP TVLANE+VV+G R
Sbjct: 122 DREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHED 181
Query: 243 HPVIRKPMRQWMLKITEYAXXXXXXXXXXXWPESVKEMQRNWIGRSEGAEMDFRVLDSDG 302
PV ++ + QW L+IT YA WPE VK MQR WIGRSEGAE+ F V
Sbjct: 182 TPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPV----- 236
Query: 303 QERDIKITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXXXXXNIEEYKNLASRKSDLERT 362
+ ++++I V+TTRPDT+FGAT+LV+APEHP + Y A RK+++ER
Sbjct: 237 EGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQ 296
Query: 363 ELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDI 422
+EKTGVF G YA NPA+GE IPIW ADYVL YGTGAIMAVPAHD RD+EFA KF +
Sbjct: 297 AEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGL 356
Query: 423 SIHSVV-MPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGN 481
I V+ P + E+AY G++VNS +G +E KVI W E+ G
Sbjct: 357 PIKKVIERPGEPLPEPLERAYEEPGIMVNSGPF------DGTESEEGKRKVIAWLEEKGL 410
Query: 482 GKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTG-TG 540
GK +V Y+LRDWL +RQRYWG PIP+V + G VP+ E ELP+ LP+L D G
Sbjct: 411 GKGRVTYRLRDWLISRQRYWGTPIPMVHCEACG-VVPVPEEELPVLLPDLKDVEDIRPKG 469
Query: 541 EPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW 577
+ PL + +TT G PA+R+T TM + S W
Sbjct: 470 KSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSW 506
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 407 bits (1047), Expect = e-114, Method: Compositional matrix adjust.
Identities = 231/518 (44%), Positives = 301/518 (58%), Gaps = 28/518 (5%)
Query: 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDI 123
Y EIE K Q +W+ RTF + D SK K+Y L M PYPSG LH+GH YT D+
Sbjct: 25 YRPEEIESKVQLHWDEKRTFEVTE--DESKEKYYCLSMLPYPSGR-LHMGHVRNYTIGDV 81
Query: 124 LARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDW 183
+AR +RM G NVL P+GWDAFGLPAE A++ T P T NI + QLK LGF YDW
Sbjct: 82 IARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYDW 141
Query: 184 NREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGH 243
+RE++T P YY+W Q F +L K+GL Y+ VNWCP TVLANE+V+DG R
Sbjct: 142 SRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDT 201
Query: 244 PVIRKPMRQWMLKITEYAXXXXXXXXXXX-WPESVKEMQRNWIGRSEGAEMDFRVLDSDG 302
V RK + QW +KIT YA WP++VK MQRNWIGRSEG E+ F V D D
Sbjct: 202 KVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVNDYDN 261
Query: 303 QERDIKITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXX--XXXNIEEYKNLASRKSDLE 360
+TVYTTRPDT G TYL VA HP I+E +N ++++
Sbjct: 262 -----TLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMA 316
Query: 361 RTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKF 420
EK GV +G A +P +GE IP+W A++VL YGTGA+MAVP HD RD+EFA K+
Sbjct: 317 TM----EKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKY 372
Query: 421 DISIHSVVMPDDESSSQ-SEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKT 479
++I V++ D S S++A T +G++ NS + NGL + A + + +
Sbjct: 373 GLNIKPVILAADGSEPDLSQQALTEKGVLFNSG------EFNGLDHEAAFNAIADKLTAM 426
Query: 480 GNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGT 539
G G++KVNY+LRDW +RQRYWG PIP+V L+ G +P + +LP+ LPE D G
Sbjct: 427 GVGERKVNYRLRDWGVSRQRYWGAPIPMVTLE-DGTVMPTPDDQLPVILPE--DVVMDGI 483
Query: 540 GEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW 577
P+ W +TT +G PA RET T + S W
Sbjct: 484 -TSPIKADPEWAKTT--VNGMPALRETDTFDTFMESSW 518
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 304 bits (778), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 139/231 (60%), Positives = 177/231 (76%), Gaps = 8/231 (3%)
Query: 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDI 123
Y +EIE KWQ+ WE + F+T ++ SK KFY LDMFPYPSG+GLHVGHP GYTATDI
Sbjct: 9 YNHNEIEKKWQTRWEKTKAFKTTNK---SKDKFYALDMFPYPSGSGLHVGHPEGYTATDI 65
Query: 124 LARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDW 183
++R KR++G++VLHP+GWDAFGLPAEQYA+ +G HP+ TL+NI FR QLKSLGFS+D+
Sbjct: 66 ISRYKRLKGFDVLHPIGWDAFGLPAEQYALSSGKHPQPFTLKNIENFRRQLKSLGFSFDY 125
Query: 184 NREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG-----VS 238
+E++T +P+YY+WTQWIF Q+ K+GLA EV VNWCP LGTVLANEE+V+ VS
Sbjct: 126 EKEVNTTDPSYYRWTQWIFKQIYKKGLAEIREVDVNWCPGLGTVLANEEIVENDKGEMVS 185
Query: 239 ERGGHPVIRKPMRQWMLKITEYAXXXXXXXXXXXWPESVKEMQRNWIGRSE 289
ERG PV +KPM+QW+LKIT YA WP+S+K++Q NWIG+ E
Sbjct: 186 ERGSFPVYKKPMKQWVLKITNYADRLLEDLNLLDWPDSLKKLQTNWIGKEE 236
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 62/93 (66%), Gaps = 6/93 (6%)
Query: 485 KVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPL 544
K+ YKL+DW+FARQRYWGEP PV F D + E + LP +++ P+GTGE PL
Sbjct: 240 KITYKLQDWIFARQRYWGEPFPVYF-DEDNNVYLIDEL---VELPHMENIMPSGTGEGPL 295
Query: 545 SKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW 577
+ WVQ +++ K +R+T+TMPQWAGSCW
Sbjct: 296 ATNTEWVQYKKNN--KIFKRDTNTMPQWAGSCW 326
>pdb|3O0A|A Chain A, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
pdb|3O0A|B Chain B, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
Length = 219
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/228 (42%), Positives = 131/228 (57%), Gaps = 32/228 (14%)
Query: 286 GRSEGAEMDFRV----------------LDSDGQERDIKITVYTTRPDTIFGATYLVVAP 329
GRSEGA + F V ++ +E+ I I V+TTRPDT+FGAT++V+AP
Sbjct: 1 GRSEGALIRFYVEIEEPEKFLNCVPEELKETLLKEKRIYIDVFTTRPDTVFGATFVVLAP 60
Query: 330 EHPXX------XXXXXXXXXXNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASG 383
EHP ++E + + S ERT ++++K GVF G YA NPA+G
Sbjct: 61 EHPLVPVLACIGERLGNACYSDVENFVEKMKKMSTRERT-MEEDKEGVFLGVYATNPANG 119
Query: 384 EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEK-AY 442
E IP+W A+YVL YGTGAIM VPAHD RD EFA K+D+ I VV P E + EK AY
Sbjct: 120 EKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKP--EGAWDFEKGAY 177
Query: 443 TGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKL 490
G+G +VNS +GL + A K+ EW + G G+KKV+Y+L
Sbjct: 178 EGKGTLVNSDGF------DGLDSETAKRKITEWLQDRGLGEKKVSYRL 219
>pdb|3PZ0|A Chain A, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|B Chain B, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|C Chain C, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|D Chain D, The Crystal Structure Of Aaleurs-Cp1
Length = 221
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/191 (46%), Positives = 116/191 (60%), Gaps = 16/191 (8%)
Query: 303 QERDIKITVYTTRPDTIFGATYLVVAPEHPXX------XXXXXXXXXXNIEEYKNLASRK 356
+E+ I I V+TTRPDT+FGAT++V+APEHP ++E + +
Sbjct: 40 KEKRIYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACYSDVENFVEKMKKM 99
Query: 357 SDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEF 416
S ERT ++++K GVF G YA NPA+GE IP+W A+YVL YGTGAIM VPAHD RD EF
Sbjct: 100 STRERT-MEEDKEGVFLGVYATNPANGEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEF 158
Query: 417 ALKFDISIHSVVMPDDESSSQSEK-AYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEW 475
A K+D+ I VV P E + EK AY G+G +VNS +GL + A K+ EW
Sbjct: 159 AKKYDLPIKVVVKP--EGAWDFEKGAYEGKGTLVNSDGF------DGLDSETAKRKITEW 210
Query: 476 AEKTGNGKKKV 486
+ G G+KKV
Sbjct: 211 LQDRGLGEKKV 221
>pdb|3PZ5|A Chain A, The Crystal Structure Of Aaleurs-Cp1-D20
pdb|3PZ5|B Chain B, The Crystal Structure Of Aaleurs-Cp1-D20
Length = 201
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 121/206 (58%), Gaps = 20/206 (9%)
Query: 288 SEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPXX------XXXXXXX 341
+EGA + F V E I I V+TTRPDT+FGAT++V+APEHP
Sbjct: 9 AEGALIRFYV----EIEELIYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNA 64
Query: 342 XXXNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTG 401
++E + + S ERT ++++K GVF G YA NPA+GE IP+W A+YVL YGTG
Sbjct: 65 CYSDVENFVEKMKKMSTRERT-MEEDKEGVFLGVYATNPANGEKIPVWSANYVLYEYGTG 123
Query: 402 AIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEK-AYTGEGLIVNSSNLISGLDI 460
AIM VPAHD RD EFA K+D+ I VV P E + EK AY G+G +VNS
Sbjct: 124 AIMCVPAHDQRDWEFAKKYDLPIKVVVKP--EGAWDFEKGAYEGKGTLVNSDGF------ 175
Query: 461 NGLSCQEATSKVIEWAEKTGNGKKKV 486
+GL + A K+ EW + G G+KKV
Sbjct: 176 DGLDSETAKRKITEWLQDRGLGEKKV 201
>pdb|2AJG|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJG|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJH|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJH|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJI|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
pdb|2AJI|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
Length = 196
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 110/202 (54%), Gaps = 18/202 (8%)
Query: 288 SEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXX--XXXN 345
EG E+ F V D D +TVYTTRPDT G TYL VA HP
Sbjct: 10 GEGVEITFNVNDYDNT-----LTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAF 64
Query: 346 IEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMA 405
I+E +N ++++ E K GV +G A +P +GE IP+W A++VL YGTGA+MA
Sbjct: 65 IDECRNTKVAEAEMATME----KKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMA 120
Query: 406 VPAHDTRDHEFALKFDISIHSVVMPDDESSSQ-SEKAYTGEGLIVNSSNLISGLDINGLS 464
VP HD RD+EFA K+ ++I V++ D S S++A T +G++ NS + NGL
Sbjct: 121 VPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSG------EFNGLD 174
Query: 465 CQEATSKVIEWAEKTGNGKKKV 486
+ A + + + G G++KV
Sbjct: 175 HEAAFNAIADKLTAMGVGERKV 196
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 118/450 (26%), Positives = 178/450 (39%), Gaps = 91/450 (20%)
Query: 66 FHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILA 125
F IE KWQ W + F + KFY+ FPY SG LHVGH YT D++A
Sbjct: 6 FKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSG-HLHVGHARTYTIPDVIA 64
Query: 126 RLKRMQGYNVLHPMGWDAFGLPAEQYA--IETGTHPKITTLRN---------------IN 168
R KRMQGYNVL PM W G P A I+ I R+ IN
Sbjct: 65 RFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPIN 124
Query: 169 RFRTQLKSL-------GFSYDWNREIST--IEPAYYKWTQWIFLQLLKRGLAYQAEVPVN 219
+ +K+ GFS DW+RE T + P + K+ +W F +L ++G + V
Sbjct: 125 IVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVR 184
Query: 220 WCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYAXXXXXXXXXXXWPESVKE 279
W P +GT L + +++ E P++ + ++ L+
Sbjct: 185 WDPVVGTPLGDHDLM----EGEDVPILDYIIIKFELR----------------------- 217
Query: 280 MQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPXXXXXXX 339
E E+ I + T RP+T++G T + V P
Sbjct: 218 ---------ENGEV-------------IYLPAATLRPETVYGVTNMWVNPNATYVKAKVR 255
Query: 340 XXXXXNIEEYKNLASRK---SDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLG 396
A+ K D E +++ K G Y RNP SG+ + I A++V
Sbjct: 256 RKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDP 315
Query: 397 SYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLIS 456
TG +M+VPAH DH V + D + ++ + Y + IV + IS
Sbjct: 316 DNATGVVMSVPAHAPFDH------------VALEDLKRETEILEKYDIDPRIVENITYIS 363
Query: 457 GLDINGLSCQEATSKVIEWAEKTGNGKKKV 486
+ + G A +V + K+ K+K+
Sbjct: 364 LIKLEGYGDFPAVEEVNKLGIKSQKDKEKL 393
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 119/455 (26%), Positives = 177/455 (38%), Gaps = 101/455 (22%)
Query: 66 FHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILA 125
F IE KWQ W + F + KFY+ FPY SG LHVGH YT D++A
Sbjct: 6 FKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSG-HLHVGHARTYTIPDVIA 64
Query: 126 RLKRMQGYNVLHPMGWDAFGLPAEQYA--IETGTHPKITTLRN---------------IN 168
R KRMQGYNVL PM W G P A I+ I R+ IN
Sbjct: 65 RFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPIN 124
Query: 169 RFRTQLKSL-------GFSYDWNREIST--IEPAYYKWTQWIFLQLLKRGLAYQAEVPVN 219
+ +K+ GFS DW+RE T + P + K+ +W F +L ++G + V
Sbjct: 125 IVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVR 184
Query: 220 WCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYAXXXXXXXXXXXWPESVKE 279
W P +GT L G H ++
Sbjct: 185 WDPVVGTPL------------GDHDLM--------------------------------- 199
Query: 280 MQRNWIGRSEGAE---MDFRVLDSDGQERD--IKITVYTTRPDTIFGATYLVVAPEHPXX 334
EG + +D+ ++ + +E I + T RP+T++G T + V P
Sbjct: 200 ---------EGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYV 250
Query: 335 XXXXXXXXXXNIEEYKNLASRK---SDLERTELQKEKTGVFSGCYARNPASGEAIPIWVA 391
A+ K D E +++ K G Y RNP SG+ + I A
Sbjct: 251 KAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPA 310
Query: 392 DYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNS 451
++V TG +M+VPAH DH V + D + ++ + Y + IV +
Sbjct: 311 EFVDPDNATGVVMSVPAHAPFDH------------VALEDLKRETEILEKYDIDPRIVEN 358
Query: 452 SNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKV 486
IS + + G A +V + K+ K+K+
Sbjct: 359 ITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKL 393
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 120/522 (22%), Positives = 186/522 (35%), Gaps = 126/522 (24%)
Query: 70 EPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKR 129
EP+ Q W+ + E + F + D PY +G LH+GH L D + R K
Sbjct: 24 EPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANG-NLHMGHALNKILKDFIVRYKT 82
Query: 130 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITT------------LRNINRFRTQLKSL 177
MQG+ + GWD GLP EQ + G K + L I + + L
Sbjct: 83 MQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRL 142
Query: 178 GFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGV 237
G D+N T++P Y IF ++ +GL Y+ + PV W P+ + LA E+
Sbjct: 143 GVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEI---- 198
Query: 238 SERGGHPVIRKPMRQWMLKITEYAXXXXXXXXXXXWPESVKEMQRNWIGRSEGAEMDFRV 297
EY RS + F V
Sbjct: 199 ---------------------EYHDK-----------------------RSASIYVAFNV 214
Query: 298 LDSDG-QERDIKITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXXXXXNIEEYKNLASRK 356
D G + D K ++TT P TI + V PE E + +
Sbjct: 215 KDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEA 274
Query: 357 SDLERT--ELQKEKTGV-FSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRD 413
D ++ +L+KE TG A++P + D+V GTG + P H D
Sbjct: 275 LDWDKASIKLEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDD 334
Query: 414 HEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNL------------------- 454
+ ++++ V+ P D+ +E+ EG+ + +N
Sbjct: 335 YIVGQQYEL---PVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFIT 391
Query: 455 ------------------------ISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKL 490
IS + + L E T+ + W GK ++ +
Sbjct: 392 HSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNW------GKTRIYNMV 445
Query: 491 RD---WLFARQRYWGEPIPVVFLDG-----TGETVPLHEAEL 524
RD W+ +RQR WG P+PV + + T ETV H A+L
Sbjct: 446 RDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVN-HVADL 486
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 87/190 (45%), Gaps = 24/190 (12%)
Query: 62 RAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAG-LHVGHPLGYTA 120
+AY +EPKW W N P + KP F + P P+ G LH+GH L +
Sbjct: 5 KAYDPKSVEPKWAEKWAKNPFVANPK---SGKPPFVIF--MPPPNVTGSLHMGHALDNSL 59
Query: 121 TDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR--------- 171
D L R KRM+G+ + G D G+ A Q +E + T ++ R +
Sbjct: 60 QDALIRYKRMRGFEAVWLPGTDHAGI-ATQVVVERLLLKEGKTRHDLGREKFLERVWQWK 118
Query: 172 --------TQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223
QLK LG S DW+RE T++ + ++ F + GLAY+A VNWCP
Sbjct: 119 EESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPR 178
Query: 224 LGTVLANEEV 233
T L++ EV
Sbjct: 179 CETTLSDLEV 188
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 67/182 (36%), Gaps = 52/182 (28%)
Query: 309 ITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXXXXXNIEEYKNLASRKSDLERTELQKEK 368
I + T RP+T+F + V PE E Y++L ++
Sbjct: 210 IEIATVRPETVFADQAIAVHPED---------------ERYRHLLGKR------------ 242
Query: 369 TGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVV 428
AR P + IPI V +GTGA+ PAHD D+E + + SV+
Sbjct: 243 --------ARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVI 294
Query: 429 MPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNY 488
+ E + E+ + GL EA K +E + G+ K+ +Y
Sbjct: 295 --NLEGRMEGERVPEA---------------LRGLDRFEARRKAVELFREAGHLVKEEDY 337
Query: 489 KL 490
+
Sbjct: 338 TI 339
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 88/208 (42%), Gaps = 25/208 (12%)
Query: 66 FHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILA 125
F ++E + ++W+ + F+ E P++ V + P +G HVGH + D+
Sbjct: 10 FPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLP-HVGHAQARSYKDLFP 68
Query: 126 RLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLR-----NINRFRTQLKSLGFS 180
R K M+GY GWD GLP E +E + + R I RF + F+
Sbjct: 69 RYKTMRGYYAPRRAGWDTHGLPVE---LEVEKKLGLKSKREIEAYGIERFNQACRESVFT 125
Query: 181 Y---------------DWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALG 225
Y D +T+EP Y + W L RGL Y+ V +CP G
Sbjct: 126 YEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCG 185
Query: 226 TVLANEEVVDGVSERGGHPV-IRKPMRQ 252
T L++ EV G E V +R P+++
Sbjct: 186 TPLSSHEVALGYKEIQDPSVYVRFPLKE 213
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 490 LRDWLFARQRYWGEPIPVVFLDGTGE 515
L DW +R RYWG P+P+ G+
Sbjct: 441 LVDWALSRNRYWGTPLPIWVCQACGK 466
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 3/131 (2%)
Query: 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQ 150
T KFYV Y + H+GH A D +AR R++ Y+V G D GL ++
Sbjct: 2 TLMKKFYVTTPIYYVNDVP-HLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQK 60
Query: 151 YAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGL 210
A E G PK RN RF+ + L Y + I T +P + K+ Q +F + KRG
Sbjct: 61 KAEELGISPKELVDRNAERFKKLWEFLKIEY--TKFIRTTDPYHVKFVQKVFEECYKRGD 118
Query: 211 AYQAEVPVNWC 221
Y E +C
Sbjct: 119 IYLGEYEGWYC 129
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQY 151
S+ K+Y+ YP+G H+GH ATD +AR +R+ G +V G D G+ Q
Sbjct: 23 SREKYYITTAIAYPNGKP-HIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQS 81
Query: 152 AIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLA 211
A + G P+ RN + FR + L S D I T E +YK +Q I+ ++ G
Sbjct: 82 ARKEGITPRDLADRNTSAFRRMAEVLNSSND--DYIRTSEERHYKASQAIWQAMVANGDI 139
Query: 212 YQ 213
Y+
Sbjct: 140 YK 141
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIET 155
FY+ YP+G H+GH Y ATD +AR KR+ GY+V + G D G + A +
Sbjct: 14 FYITTAIAYPNGVP-HIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKE 72
Query: 156 GTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAY 212
G RN + F+ + L S+D R I T + +Y+ ++ I+ ++ G Y
Sbjct: 73 GIPAAELARRNSDVFQRLQEKLNISFD--RFIRTSDADHYEASKAIWKRMADAGDIY 127
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 2/157 (1%)
Query: 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITT 163
Y A H+GH D LAR R+ GY G D G + A G PK
Sbjct: 12 YYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFV 71
Query: 164 LRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223
R RF+ LG +YD I T E + K Q + ++ + G Y E +C +
Sbjct: 72 DRVSGRFKRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVS 129
Query: 224 LGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEY 260
+E+V+G+ G PV R+ + ++ +Y
Sbjct: 130 CERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKY 166
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 2/157 (1%)
Query: 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITT 163
Y A H+GH D LAR R+ GY G D G + A G PK
Sbjct: 12 YYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFV 71
Query: 164 LRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223
R RF+ LG +YD I T E + K Q + ++ + G Y E +C +
Sbjct: 72 DRVSGRFKRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVS 129
Query: 224 LGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEY 260
+E+V+G+ G PV R+ + ++ +Y
Sbjct: 130 CERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKY 166
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 2/157 (1%)
Query: 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITT 163
Y A H+GH D LAR R+ GY G D G + A G PK
Sbjct: 12 YYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFV 71
Query: 164 LRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223
R RF+ LG +YD I T E + K Q + ++ + G Y E +C +
Sbjct: 72 DRVSGRFKRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVS 129
Query: 224 LGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEY 260
+E+V+G+ G PV R+ + ++ +Y
Sbjct: 130 CERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKY 166
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 3/141 (2%)
Query: 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITT 163
Y A H+GH D+L R R++G V G D G + A + G P T
Sbjct: 35 YYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFT 94
Query: 164 LRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223
+ F+ + + +YD N I T P + K Q I+ +L +G Y + + +
Sbjct: 95 TSVSSEFKQCFQEM--NYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVS 152
Query: 224 LGTVLANEEVVDGVSERGGHP 244
+ L + V DGV +R G P
Sbjct: 153 DESFLTAQNVADGV-DRDGKP 172
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 9/155 (5%)
Query: 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIE 154
K V PY +G+ +H+GH L + D+ R +RM+G+ V DA G P A +
Sbjct: 6 KILVTCALPYANGS-IHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ 64
Query: 155 TGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214
G P+ +T SYD ST + ++ I+ +L + G
Sbjct: 65 LGITPEQMIGEMSQEHQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNR 122
Query: 215 EVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKP 249
+ + P G L + V +G P + P
Sbjct: 123 TISQLYDPEKGMFLPDRFV------KGTCPKCKSP 151
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 9/155 (5%)
Query: 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIE 154
K V PY +G+ +H+GH L + D+ R +RM+G+ V DA G P A +
Sbjct: 7 KILVTCALPYANGS-IHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ 65
Query: 155 TGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214
G P+ +T SYD ST + ++ I+ +L + G
Sbjct: 66 LGITPEQMIGEMSQEHQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNR 123
Query: 215 EVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKP 249
+ + P G L + V +G P + P
Sbjct: 124 TISQLYDPEKGMFLPDRFV------KGTCPKCKSP 152
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 9/155 (5%)
Query: 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIE 154
K V PY +G+ +H+GH L + D+ R +RM+G+ V DA G P A +
Sbjct: 6 KILVTCALPYANGS-IHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ 64
Query: 155 TGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214
G P+ +T SYD ST + ++ I+ +L + G
Sbjct: 65 LGITPEQMIGEMSQEHQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNR 122
Query: 215 EVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKP 249
+ + P G L + V +G P + P
Sbjct: 123 TISQLYDPEKGMFLPDRFV------KGTCPKCKSP 151
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 9/155 (5%)
Query: 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIE 154
K V PY +G+ +H+GH L + D+ R +RM+G+ V DA G P A +
Sbjct: 6 KILVTCALPYANGS-IHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ 64
Query: 155 TGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214
G P+ +T SYD ST + ++ I+ +L + G
Sbjct: 65 LGITPEQMIGEMSQEHQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNR 122
Query: 215 EVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKP 249
+ + P G L + V +G P + P
Sbjct: 123 TISQLYDPEKGMFLPDRFV------KGTCPKCKSP 151
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 9/147 (6%)
Query: 103 PYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKIT 162
PY +G+ +H+GH L + D+ R +RM+G+ V DA G P A + G P+
Sbjct: 27 PYANGS-IHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQM 85
Query: 163 TLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCP 222
+T SYD ST + ++ I+ +L + G + + P
Sbjct: 86 IGEMSQEHQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDP 143
Query: 223 ALGTVLANEEVVDGVSERGGHPVIRKP 249
G L + V +G P + P
Sbjct: 144 EKGMFLPDRFV------KGTCPKCKSP 164
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 64/166 (38%), Gaps = 11/166 (6%)
Query: 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITT 163
Y A H+GH TD++ R R++G V G D G + A + P T
Sbjct: 18 YYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFT 77
Query: 164 LRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223
F+ + + +S D+ I T + + ++ +L ++G Y + +
Sbjct: 78 TAVAGEFKKXFEQMDYSIDYF--IRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSIS 135
Query: 224 LGTVLANEEVVDGVSERG---------GHPVIRKPMRQWMLKITEY 260
+ L + + DGV + G GH V +M +++ +
Sbjct: 136 DESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAF 181
>pdb|1WK9|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 146
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 35/120 (29%)
Query: 309 ITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXXXXXNIEEYKNLASRKSDLERTELQKEK 368
I + T RP+T+F + V PE E Y++L ++
Sbjct: 19 IEIATVRPETVFADQAIAVHPED---------------ERYRHLLGKR------------ 51
Query: 369 TGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVV 428
AR P + IPI V +GTGA+ PAHD D+E + + SV+
Sbjct: 52 --------ARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVI 103
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 64/166 (38%), Gaps = 11/166 (6%)
Query: 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITT 163
Y A H+GH TD++ R R++G V G D G + A + P T
Sbjct: 18 YYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFT 77
Query: 164 LRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223
F+ + + +S D+ I T + + ++ +L ++G Y + +
Sbjct: 78 TAVAGEFKKCFEQMDYSIDYF--IRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSIS 135
Query: 224 LGTVLANEEVVDGVSERG---------GHPVIRKPMRQWMLKITEY 260
+ L + + DGV + G GH V +M +++ +
Sbjct: 136 DESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAF 181
>pdb|1WKA|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 147
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 35/120 (29%)
Query: 309 ITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXXXXXNIEEYKNLASRKSDLERTELQKEK 368
I + T RP+T+F + V PE E Y++L ++
Sbjct: 19 IEIATVRPETVFADQAIAVHPED---------------ERYRHLLGKR------------ 51
Query: 369 TGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVV 428
AR P + IPI V +GTGA+ PAHD D+E + + SV+
Sbjct: 52 --------ARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVI 103
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 64/166 (38%), Gaps = 11/166 (6%)
Query: 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITT 163
Y A H+GH TD++ R R++G V G D G + A + P T
Sbjct: 18 YYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFT 77
Query: 164 LRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223
F+ + + +S D+ I T + + ++ +L ++G Y + +
Sbjct: 78 TAVAGEFKKCFEQMDYSIDYF--IRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSIS 135
Query: 224 LGTVLANEEVVDGVSERG---------GHPVIRKPMRQWMLKITEY 260
+ L + + DGV + G GH V +M +++ +
Sbjct: 136 DESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAF 181
>pdb|1IRX|A Chain A, Crystal Structure Of Class I Lysyl-Trna Synthetase
pdb|1IRX|B Chain B, Crystal Structure Of Class I Lysyl-Trna Synthetase
Length = 523
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 59/155 (38%), Gaps = 29/155 (18%)
Query: 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAF------------ 144
YV++ PSG +HVG+ I+ R +GY V H WD +
Sbjct: 22 YVVESGITPSGY-VHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQ 80
Query: 145 ------GLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYD--WNREI-------ST 189
G+P + G H + +F +++ LG D + E+
Sbjct: 81 EWKDYLGMPISEVPDPWGCHESYAE-HFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEE 139
Query: 190 IEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPAL 224
I A+ K + + + R +A Q +P NW PA+
Sbjct: 140 IRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAM 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,107,464
Number of Sequences: 62578
Number of extensions: 783638
Number of successful extensions: 1551
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1460
Number of HSP's gapped (non-prelim): 42
length of query: 577
length of database: 14,973,337
effective HSP length: 104
effective length of query: 473
effective length of database: 8,465,225
effective search space: 4004051425
effective search space used: 4004051425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)