Query 008100
Match_columns 577
No_of_seqs 342 out of 2935
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 19:28:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008100.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008100hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02563 aminoacyl-tRNA ligase 100.0 9E-128 2E-132 1109.8 46.8 533 43-577 59-591 (963)
2 TIGR00396 leuS_bact leucyl-tRN 100.0 3E-118 7E-123 1028.1 42.5 493 64-577 1-495 (842)
3 PRK00390 leuS leucyl-tRNA synt 100.0 3E-115 7E-120 1001.7 42.8 496 61-577 2-498 (805)
4 KOG0435 Leucyl-tRNA synthetase 100.0 3E-107 6E-112 861.8 28.6 466 68-577 34-502 (876)
5 COG0060 IleS Isoleucyl-tRNA sy 100.0 5E-105 1E-109 898.5 22.9 463 59-576 13-536 (933)
6 COG0495 LeuS Leucyl-tRNA synth 100.0 6E-103 1E-107 875.9 36.2 496 61-577 2-500 (814)
7 PRK06039 ileS isoleucyl-tRNA s 100.0 3.6E-96 8E-101 859.2 35.8 436 59-577 6-524 (975)
8 PRK05743 ileS isoleucyl-tRNA s 100.0 1.4E-95 3E-100 848.4 31.3 441 60-576 15-529 (912)
9 PRK13804 ileS isoleucyl-tRNA s 100.0 2.3E-95 5E-100 848.4 32.0 450 60-575 20-566 (961)
10 TIGR00392 ileS isoleucyl-tRNA 100.0 5.2E-94 1.1E-98 836.3 31.5 454 60-576 2-543 (861)
11 PLN02882 aminoacyl-tRNA ligase 100.0 8.5E-93 1.8E-97 835.0 33.9 438 61-576 5-545 (1159)
12 PLN02843 isoleucyl-tRNA synthe 100.0 5.2E-93 1.1E-97 828.6 30.6 459 64-576 3-548 (974)
13 COG0525 ValS Valyl-tRNA synthe 100.0 5.9E-92 1.3E-96 784.1 35.0 383 60-576 1-457 (877)
14 PTZ00427 isoleucine-tRNA ligas 100.0 1.9E-92 4.1E-97 829.3 32.4 471 60-576 68-650 (1205)
15 PF00133 tRNA-synt_1: tRNA syn 100.0 3.7E-93 8.1E-98 798.4 15.3 420 72-577 1-493 (601)
16 PLN02943 aminoacyl-tRNA ligase 100.0 4.8E-90 1E-94 803.6 33.8 403 58-576 55-514 (958)
17 PTZ00419 valyl-tRNA synthetase 100.0 3.9E-89 8.5E-94 802.9 35.4 417 59-577 23-518 (995)
18 PRK14900 valS valyl-tRNA synth 100.0 3.9E-88 8.4E-93 792.7 35.9 382 57-576 12-470 (1052)
19 PRK13208 valS valyl-tRNA synth 100.0 4.7E-88 1E-92 780.4 34.9 390 60-577 6-466 (800)
20 PLN02381 valyl-tRNA synthetase 100.0 1E-87 2.2E-92 788.0 35.3 409 59-577 95-588 (1066)
21 TIGR00422 valS valyl-tRNA synt 100.0 3E-87 6.5E-92 779.0 35.5 382 60-577 1-458 (861)
22 PRK05729 valS valyl-tRNA synth 100.0 2.8E-86 6.2E-91 770.6 36.5 375 59-576 4-452 (874)
23 KOG0433 Isoleucyl-tRNA synthet 100.0 3.2E-83 6.8E-88 683.9 15.1 453 63-577 29-555 (937)
24 KOG0434 Isoleucyl-tRNA synthet 100.0 6.3E-79 1.4E-83 644.6 22.1 456 60-576 4-532 (1070)
25 PLN02959 aminoacyl-tRNA ligase 100.0 5.2E-78 1.1E-82 708.0 30.3 365 60-481 9-509 (1084)
26 TIGR00395 leuS_arch leucyl-tRN 100.0 1.4E-75 3.1E-80 682.5 30.0 353 68-482 2-418 (938)
27 KOG0432 Valyl-tRNA synthetase 100.0 2.6E-75 5.6E-80 634.8 23.3 361 58-511 40-475 (995)
28 PRK12300 leuS leucyl-tRNA synt 100.0 4.4E-69 9.6E-74 625.6 25.5 314 110-482 1-371 (897)
29 cd00817 ValRS_core catalytic c 100.0 5.6E-55 1.2E-59 465.3 20.5 169 94-267 1-185 (382)
30 cd00818 IleRS_core catalytic c 100.0 5.9E-44 1.3E-48 374.7 19.1 149 94-266 1-166 (338)
31 PLN02224 methionine-tRNA ligas 100.0 7.8E-37 1.7E-41 340.3 19.1 193 92-287 67-263 (616)
32 COG0143 MetG Methionyl-tRNA sy 100.0 3.3E-36 7.1E-41 328.7 17.3 192 93-287 4-227 (558)
33 PLN02610 probable methionyl-tR 100.0 5.1E-36 1.1E-40 342.8 18.8 195 90-287 13-243 (801)
34 PRK12267 methionyl-tRNA synthe 100.0 6.1E-35 1.3E-39 331.3 18.3 191 94-287 4-199 (648)
35 PRK00133 metG methionyl-tRNA s 100.0 6E-35 1.3E-39 332.0 18.1 191 94-287 2-222 (673)
36 PF09334 tRNA-synt_1g: tRNA sy 100.0 3.7E-35 7.9E-40 313.0 13.3 188 96-287 1-220 (391)
37 PRK12268 methionyl-tRNA synthe 100.0 1.4E-34 3E-39 323.6 17.3 190 94-286 3-223 (556)
38 PF13603 tRNA-synt_1_2: Leucyl 100.0 2.7E-34 5.8E-39 273.5 14.9 183 282-477 1-185 (185)
39 cd00814 MetRS_core catalytic c 100.0 4.2E-34 9.1E-39 298.4 17.1 174 95-287 1-177 (319)
40 PRK11893 methionyl-tRNA synthe 100.0 5.4E-34 1.2E-38 316.1 18.6 191 94-287 1-196 (511)
41 TIGR00398 metG methionyl-tRNA 100.0 6.3E-34 1.4E-38 316.6 17.4 189 96-287 1-222 (530)
42 KOG0437 Leucyl-tRNA synthetase 100.0 2.3E-32 4.9E-37 293.2 22.0 310 66-418 14-405 (1080)
43 cd00812 LeuRS_core catalytic c 100.0 6.5E-33 1.4E-37 288.6 15.1 165 95-286 1-168 (314)
44 cd00668 Ile_Leu_Val_MetRS_core 100.0 4.8E-32 1E-36 282.2 16.2 163 95-287 1-177 (312)
45 KOG0436 Methionyl-tRNA synthet 99.9 2.8E-27 6E-32 241.4 16.3 193 93-288 38-240 (578)
46 PLN02946 cysteine-tRNA ligase 99.8 3E-21 6.5E-26 211.5 12.1 134 82-224 72-205 (557)
47 PRK00260 cysS cysteinyl-tRNA s 99.8 6.4E-21 1.4E-25 208.3 12.9 134 82-225 15-149 (463)
48 TIGR00435 cysS cysteinyl-tRNA 99.8 1.9E-20 4E-25 204.3 12.9 136 82-226 13-149 (465)
49 TIGR03447 mycothiol_MshC cyste 99.8 4.7E-19 1E-23 188.1 12.3 126 92-224 35-165 (411)
50 PRK14536 cysS cysteinyl-tRNA s 99.8 1E-18 2.2E-23 189.7 13.0 133 82-223 15-157 (490)
51 PRK12418 cysteinyl-tRNA synthe 99.8 1.4E-18 2.9E-23 183.7 12.8 128 90-224 5-138 (384)
52 PRK14535 cysS cysteinyl-tRNA s 99.8 1.9E-18 4.2E-23 190.6 12.8 130 90-225 245-375 (699)
53 cd00672 CysRS_core catalytic c 99.8 1.1E-18 2.4E-23 171.4 8.8 95 90-189 17-112 (213)
54 KOG1247 Methionyl-tRNA synthet 99.7 1.4E-18 3E-23 177.8 7.6 195 91-288 11-239 (567)
55 PTZ00399 cysteinyl-tRNA-synthe 99.7 1.4E-17 3E-22 187.6 12.3 134 82-224 52-187 (651)
56 cd00671 ArgRS_core catalytic c 99.7 2.1E-17 4.6E-22 162.8 10.9 119 101-225 7-125 (212)
57 PRK14534 cysS cysteinyl-tRNA s 99.7 8.8E-17 1.9E-21 173.9 12.5 127 92-224 20-156 (481)
58 PRK01611 argS arginyl-tRNA syn 99.7 4E-16 8.6E-21 172.8 12.3 127 92-221 109-236 (507)
59 PF01406 tRNA-synt_1e: tRNA sy 99.6 1.5E-15 3.2E-20 154.0 10.1 128 90-223 5-133 (300)
60 cd00674 LysRS_core_class_I cat 99.6 3.7E-15 8.1E-20 156.2 8.4 129 93-228 18-178 (353)
61 COG0215 CysS Cysteinyl-tRNA sy 99.5 2.2E-14 4.8E-19 152.5 10.9 135 82-225 14-149 (464)
62 cd00802 class_I_aaRS_core cata 99.3 3.4E-12 7.3E-17 117.9 7.5 75 100-175 3-77 (143)
63 KOG2007 Cysteinyl-tRNA synthet 99.3 8.8E-12 1.9E-16 131.4 10.5 134 82-224 47-186 (586)
64 PRK00750 lysK lysyl-tRNA synth 99.3 2.7E-12 5.8E-17 141.8 3.9 131 94-229 23-186 (510)
65 TIGR00467 lysS_arch lysyl-tRNA 99.0 2.6E-10 5.7E-15 125.4 5.8 130 94-229 18-179 (515)
66 TIGR00456 argS arginyl-tRNA sy 98.9 6.1E-09 1.3E-13 117.1 12.6 124 93-220 111-288 (566)
67 COG0018 ArgS Arginyl-tRNA synt 98.8 2.3E-08 5E-13 111.4 13.0 148 68-221 92-296 (577)
68 PF00750 tRNA-synt_1d: tRNA sy 98.7 5E-08 1.1E-12 103.6 9.8 126 92-220 18-199 (354)
69 PRK12451 arginyl-tRNA syntheta 98.6 2.1E-07 4.4E-12 104.6 12.8 122 93-219 112-285 (562)
70 PLN02286 arginine-tRNA ligase 98.5 9.7E-07 2.1E-11 99.4 13.4 120 94-219 117-289 (576)
71 cd09287 GluRS_non_core catalyt 98.4 4.7E-07 1E-11 90.2 6.8 92 101-213 6-97 (240)
72 PRK04156 gltX glutamyl-tRNA sy 98.2 5.7E-06 1.2E-10 91.9 10.4 97 97-214 102-198 (567)
73 cd00668 Ile_Leu_Val_MetRS_core 98.0 2E-06 4.4E-11 89.8 1.4 17 490-506 178-194 (312)
74 TIGR00463 gltX_arch glutamyl-t 97.9 2.2E-05 4.8E-10 87.2 7.8 95 97-214 94-188 (560)
75 PRK12558 glutamyl-tRNA synthet 97.8 6E-05 1.3E-09 81.8 7.9 89 102-213 8-96 (445)
76 PLN03233 putative glutamate-tR 97.7 8E-05 1.7E-09 82.0 8.1 95 97-214 12-106 (523)
77 PTZ00437 glutaminyl-tRNA synth 97.7 9.9E-05 2.1E-09 81.6 8.5 94 98-214 53-146 (574)
78 TIGR03838 queuosine_YadB gluta 97.7 0.00011 2.3E-09 75.0 8.0 89 102-213 6-95 (272)
79 PTZ00402 glutamyl-tRNA synthet 97.7 0.00011 2.3E-09 82.0 8.4 93 97-212 53-146 (601)
80 PF00749 tRNA-synt_1c: tRNA sy 97.6 0.00014 3E-09 76.1 7.8 90 102-213 7-96 (314)
81 PLN02907 glutamate-tRNA ligase 97.6 0.0002 4.3E-09 82.5 9.5 94 97-213 214-307 (722)
82 PRK12268 methionyl-tRNA synthe 97.6 2.3E-05 4.9E-10 88.4 1.4 27 489-517 225-251 (556)
83 cd00807 GlnRS_core catalytic c 97.6 0.00019 4E-09 71.6 7.7 89 102-213 7-95 (238)
84 PRK05710 glutamyl-Q tRNA(Asp) 97.6 0.00022 4.8E-09 73.6 8.1 91 100-213 9-100 (299)
85 TIGR00440 glnS glutaminyl-tRNA 97.5 0.00023 4.9E-09 78.5 7.8 92 102-215 6-97 (522)
86 COG0008 GlnS Glutamyl- and glu 97.5 0.00031 6.7E-09 76.8 8.3 95 97-214 10-105 (472)
87 PRK14895 gltX glutamyl-tRNA sy 97.4 0.00036 7.8E-09 76.8 8.3 90 101-213 9-99 (513)
88 PRK12410 glutamylglutaminyl-tR 97.4 0.00035 7.6E-09 75.6 8.0 89 102-213 5-93 (433)
89 PRK05347 glutaminyl-tRNA synth 97.4 0.00033 7.2E-09 77.5 7.6 96 97-214 30-125 (554)
90 PRK12267 methionyl-tRNA synthe 97.4 4.4E-05 9.5E-10 87.6 0.6 19 489-507 200-219 (648)
91 TIGR00464 gltX_bact glutamyl-t 97.4 0.00047 1E-08 76.0 8.1 89 102-213 7-96 (470)
92 PLN02859 glutamine-tRNA ligase 97.4 0.00052 1.1E-08 78.5 8.6 94 97-213 265-358 (788)
93 cd00808 GluRS_core catalytic c 97.2 0.0011 2.3E-08 66.6 8.2 85 102-209 7-100 (239)
94 cd00418 GlxRS_core catalytic c 97.2 0.001 2.2E-08 66.2 7.6 85 102-209 7-92 (230)
95 PRK11893 methionyl-tRNA synthe 97.1 0.00015 3.2E-09 81.0 0.8 19 489-507 197-216 (511)
96 PRK14703 glutaminyl-tRNA synth 97.1 0.0013 2.7E-08 76.0 8.0 95 97-214 32-127 (771)
97 PLN02627 glutamyl-tRNA synthet 97.1 0.0014 3E-08 72.5 7.7 90 101-213 50-148 (535)
98 PRK01406 gltX glutamyl-tRNA sy 97.0 0.0017 3.7E-08 71.7 8.0 90 101-213 9-106 (476)
99 COG1384 LysS Lysyl-tRNA synthe 96.9 0.0042 9.1E-08 67.5 9.9 86 96-182 20-124 (521)
100 PF01921 tRNA-synt_1f: tRNA sy 96.9 0.00049 1.1E-08 72.3 2.5 85 96-182 24-127 (360)
101 KOG1147 Glutamyl-tRNA syntheta 96.6 0.0064 1.4E-07 65.9 8.4 99 97-218 201-299 (712)
102 TIGR00398 metG methionyl-tRNA 96.5 0.00088 1.9E-08 75.2 0.7 19 490-508 224-243 (530)
103 KOG4426 Arginyl-tRNA synthetas 95.4 0.08 1.7E-06 56.3 9.6 122 102-228 194-369 (656)
104 cd00812 LeuRS_core catalytic c 95.2 0.0092 2E-07 62.5 1.9 13 495-507 169-181 (314)
105 cd00814 MetRS_core catalytic c 94.9 0.01 2.2E-07 62.3 1.0 19 489-507 178-197 (319)
106 PRK00133 metG methionyl-tRNA s 94.4 0.017 3.7E-07 66.7 1.4 18 489-506 223-241 (673)
107 PLN02882 aminoacyl-tRNA ligase 94.3 0.046 1E-06 66.7 4.9 80 194-287 382-463 (1159)
108 PRK06039 ileS isoleucyl-tRNA s 94.1 0.06 1.3E-06 64.9 5.3 79 194-286 361-441 (975)
109 KOG1148 Glutaminyl-tRNA synthe 93.9 0.13 2.9E-06 56.6 6.9 94 97-213 249-342 (764)
110 PRK14900 valS valyl-tRNA synth 93.7 0.1 2.2E-06 63.3 6.2 80 194-287 330-412 (1052)
111 PRK13208 valS valyl-tRNA synth 93.5 0.12 2.6E-06 61.1 6.4 78 195-286 314-392 (800)
112 TIGR00392 ileS isoleucyl-tRNA 93.5 0.11 2.4E-06 61.8 6.1 77 196-286 381-458 (861)
113 TIGR00422 valS valyl-tRNA synt 93.4 0.099 2.1E-06 62.3 5.5 78 195-286 314-394 (861)
114 KOG1195 Arginyl-tRNA synthetas 92.8 0.99 2.2E-05 49.3 11.3 146 68-220 86-284 (567)
115 PTZ00427 isoleucine-tRNA ligas 92.6 0.16 3.4E-06 62.2 5.6 79 195-287 487-567 (1205)
116 PRK05729 valS valyl-tRNA synth 92.3 0.21 4.5E-06 59.6 6.1 79 195-287 316-397 (874)
117 COG0060 IleS Isoleucyl-tRNA sy 91.2 0.29 6.3E-06 57.8 5.5 77 196-286 375-452 (933)
118 PRK05743 ileS isoleucyl-tRNA s 91.2 0.32 7E-06 58.2 6.0 79 194-286 368-449 (912)
119 TIGR00395 leuS_arch leucyl-tRN 90.1 1.6 3.4E-05 52.6 10.5 161 107-286 301-482 (938)
120 PLN02943 aminoacyl-tRNA ligase 89.1 0.68 1.5E-05 55.8 6.4 77 196-286 367-446 (958)
121 PTZ00419 valyl-tRNA synthetase 88.1 0.86 1.9E-05 55.3 6.4 80 194-287 359-441 (995)
122 PRK13804 ileS isoleucyl-tRNA s 87.6 0.74 1.6E-05 55.5 5.4 78 195-286 400-485 (961)
123 PLN02843 isoleucyl-tRNA synthe 87.2 0.9 2E-05 54.8 5.8 77 197-287 388-465 (974)
124 PF00133 tRNA-synt_1: tRNA syn 85.5 0.63 1.4E-05 53.2 3.2 80 194-287 333-413 (601)
125 PLN02486 aminoacyl-tRNA ligase 84.7 5.9 0.00013 42.7 9.9 90 92-195 70-159 (383)
126 PLN02224 methionine-tRNA ligas 83.8 0.45 9.6E-06 54.4 1.0 19 489-507 264-283 (616)
127 COG0495 LeuS Leucyl-tRNA synth 83.5 0.053 1.1E-06 63.1 -6.6 98 309-417 208-311 (814)
128 COG1656 Uncharacterized conser 82.5 2.9 6.2E-05 39.3 5.6 94 124-234 18-116 (165)
129 PLN02381 valyl-tRNA synthetase 82.2 2.1 4.7E-05 52.1 6.0 80 194-287 426-511 (1066)
130 PRK12285 tryptophanyl-tRNA syn 82.0 6.5 0.00014 42.2 8.9 76 93-182 64-139 (368)
131 COG0525 ValS Valyl-tRNA synthe 81.4 6.6 0.00014 46.3 9.2 80 195-288 314-396 (877)
132 PF01927 Mut7-C: Mut7-C RNAse 80.9 2.2 4.7E-05 39.6 4.3 31 124-156 12-42 (147)
133 COG0143 MetG Methionyl-tRNA sy 80.6 0.94 2E-05 51.0 2.0 18 489-506 228-246 (558)
134 PLN02610 probable methionyl-tR 79.9 0.7 1.5E-05 54.5 0.8 19 489-507 244-262 (801)
135 cd00395 Tyr_Trp_RS_core cataly 75.8 4.6 9.9E-05 41.5 5.3 71 105-180 8-80 (273)
136 PLN02959 aminoacyl-tRNA ligase 75.2 4.3 9.2E-05 49.7 5.6 77 194-286 493-572 (1084)
137 KOG1149 Glutamyl-tRNA syntheta 75.1 7 0.00015 42.2 6.4 127 102-252 39-190 (524)
138 PRK12300 leuS leucyl-tRNA synt 74.2 6.2 0.00013 47.4 6.5 79 193-286 353-435 (897)
139 PRK13354 tyrosyl-tRNA syntheta 72.0 6.4 0.00014 42.9 5.5 82 94-182 32-115 (410)
140 cd00805 TyrRS_core catalytic c 69.0 3.7 7.9E-05 42.1 2.7 71 104-180 8-81 (269)
141 cd00806 TrpRS_core catalytic c 68.4 12 0.00025 38.7 6.2 68 104-186 7-75 (280)
142 PRK05912 tyrosyl-tRNA syntheta 64.0 15 0.00033 39.9 6.4 77 95-182 33-115 (408)
143 COG0162 TyrS Tyrosyl-tRNA synt 61.6 7.1 0.00015 42.2 3.2 98 105-211 41-151 (401)
144 PRK12284 tryptophanyl-tRNA syn 60.7 25 0.00055 38.4 7.2 96 104-212 10-106 (431)
145 COG0180 TrpS Tryptophanyl-tRNA 58.9 48 0.001 34.8 8.6 75 95-182 5-80 (314)
146 PRK08560 tyrosyl-tRNA syntheta 57.2 32 0.00069 36.3 7.2 74 95-182 30-103 (329)
147 PF09334 tRNA-synt_1g: tRNA sy 54.7 4.4 9.5E-05 43.8 0.3 18 489-506 221-238 (391)
148 PRK00927 tryptophanyl-tRNA syn 52.7 18 0.0004 38.2 4.5 65 104-182 9-73 (333)
149 TIGR00233 trpS tryptophanyl-tR 52.1 47 0.001 35.0 7.5 73 97-182 4-76 (328)
150 KOG2623 Tyrosyl-tRNA synthetas 51.9 31 0.00067 37.0 5.9 70 97-177 65-141 (467)
151 PLN02886 aminoacyl-tRNA ligase 49.2 27 0.00059 37.7 5.1 85 105-204 55-140 (389)
152 PRK03824 hypA hydrogenase nick 46.8 21 0.00045 32.7 3.3 15 506-520 69-83 (135)
153 COG5270 PUA domain (predicted 45.4 14 0.0003 35.4 1.9 38 206-248 2-39 (202)
154 PF07295 DUF1451: Protein of u 42.4 22 0.00049 32.9 2.8 14 553-566 131-145 (146)
155 KOG2145 Cytoplasmic tryptophan 41.9 20 0.00044 36.8 2.6 90 92-195 82-171 (397)
156 KOG0434 Isoleucyl-tRNA synthet 40.0 32 0.00069 39.5 4.0 75 198-286 375-451 (1070)
157 COG3770 MepA Murein endopeptid 39.9 12 0.00025 37.3 0.6 12 496-507 69-80 (284)
158 PRK12556 tryptophanyl-tRNA syn 39.3 54 0.0012 34.7 5.5 66 105-182 12-77 (332)
159 TIGR00373 conserved hypothetic 38.8 27 0.00058 32.8 2.8 95 149-248 32-141 (158)
160 KOG1247 Methionyl-tRNA synthet 38.8 26 0.00056 37.8 2.9 40 468-507 207-257 (567)
161 smart00531 TFIIE Transcription 38.1 24 0.00052 32.6 2.4 66 183-248 60-136 (147)
162 PTZ00126 tyrosyl-tRNA syntheta 36.1 43 0.00093 36.2 4.2 77 95-182 66-142 (383)
163 PRK06266 transcription initiat 33.7 53 0.0011 31.5 4.0 44 207-250 106-151 (178)
164 TIGR00234 tyrS tyrosyl-tRNA sy 33.5 52 0.0011 35.4 4.4 78 96-180 31-110 (377)
165 PRK11032 hypothetical protein; 30.9 47 0.001 31.3 3.0 14 553-566 143-157 (160)
166 PRK12283 tryptophanyl-tRNA syn 29.9 90 0.002 33.8 5.4 77 104-194 10-88 (398)
167 TIGR03831 YgiT_finger YgiT-typ 28.8 31 0.00068 24.5 1.2 14 504-517 29-42 (46)
168 PF13240 zinc_ribbon_2: zinc-r 28.4 33 0.00071 21.4 1.0 21 220-243 1-21 (23)
169 PF01783 Ribosomal_L32p: Ribos 28.3 86 0.0019 24.0 3.6 16 554-571 41-56 (56)
170 PF00579 tRNA-synt_1b: tRNA sy 27.5 33 0.00073 35.3 1.6 41 94-140 4-44 (292)
171 COG3171 Uncharacterized protei 25.7 1.1E+02 0.0024 27.0 4.1 50 171-220 23-73 (119)
172 TIGR01031 rpmF_bact ribosomal 24.1 50 0.0011 25.3 1.6 18 500-517 18-36 (55)
173 COG2331 Uncharacterized protei 22.6 31 0.00068 28.1 0.2 25 553-577 34-59 (82)
174 cd06545 GH18_3CO4_chitinase Th 20.3 2.3E+02 0.0051 28.3 6.1 98 103-210 33-133 (253)
175 smart00834 CxxC_CXXC_SSSS Puta 20.2 94 0.002 21.5 2.3 13 553-565 27-39 (41)
No 1
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=8.6e-128 Score=1109.81 Aligned_cols=533 Identities=83% Similarity=1.368 Sum_probs=480.9
Q ss_pred cccchhHHHHHhhhhhhcccCCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHH
Q 008100 43 VRCSVNEIEEQKQKQQVVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATD 122 (577)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~D 122 (577)
++++..+++..++..+.+++.|+|.++|++||++|+++++|+...+.+.++++||+++|||||||.+|||||+++++++|
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~y~~~~iE~kwq~~W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~D 138 (963)
T PLN02563 59 FAAPSALTSTTAKTTPAAKRAYPFHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATD 138 (963)
T ss_pred cccccchhhhhhhcccccCCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHHHHHHH
Confidence 33444455556666667899999999999999999999999976433567889999999999999449999999999999
Q ss_pred HHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHH
Q 008100 123 ILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIF 202 (577)
Q Consensus 123 vi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f 202 (577)
+++||+||+||+|++++|||+||+|+|++|++.|..+++++.++++.|++||++||+++||+++|.|+||.|+++++|+|
T Consensus 139 viaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F 218 (963)
T PLN02563 139 ILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIF 218 (963)
T ss_pred HHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHHH
Q 008100 203 LQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQR 282 (577)
Q Consensus 203 ~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~~ 282 (577)
.+|+++|+||++.++|+|||.|+|+||++||++++|++||+++++++++||||+|++|+++|+++|+.+.||+++++||+
T Consensus 219 ~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~ 298 (963)
T PLN02563 219 LQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKEMQR 298 (963)
T ss_pred HHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCceEEEEeecCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchhhh
Q 008100 283 NWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERT 362 (577)
Q Consensus 283 ~~i~~~~~~~~~f~l~~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (577)
||||++.+++++|++.+.++...+.+|+||||||||||||+||+|||+++|+..++..++...+++|+....+.+++++.
T Consensus 299 nwiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~~ 378 (963)
T PLN02563 299 NWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERT 378 (963)
T ss_pred HhccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHhhh
Confidence 99999999999999864322112358999999999999999999999999987776554445567888877666666655
Q ss_pred hhhhcccccccceEEecCCCCCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCCCccccccc
Q 008100 363 ELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAY 442 (577)
Q Consensus 363 ~~~~~~~~~~~G~~~~~P~~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~~~~~~~~~ 442 (577)
....+++|.|+|.++.||++++.+||+.++||++++|||+||+|||||++||++|++||||++++|+++++........|
T Consensus 379 ~~~~~k~g~~~g~~~~~P~~~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~y 458 (963)
T PLN02563 379 ELQKEKTGVFTGSYAINPATGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAY 458 (963)
T ss_pred hccceecccccCcEEeccCCCCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCccccccccccc
Confidence 55567889999999999999999999999999999999999999999999999999999999999975422211223468
Q ss_pred cccceEeccCccccccccCCCCHHHHHHHHHHHHHhcCCCceeeeeccCcccccCcCccccccceEEECCCCeeeecCCC
Q 008100 443 TGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEA 522 (577)
Q Consensus 443 ~~~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~~~~~~~~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~ 522 (577)
.+.|+++++.. .+.+++||..++|+.+|+++|.+.|.++++++|+++|||||||||||+|||||||++||++++++++
T Consensus 459 ~~~G~l~ns~~--~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~y~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~e~ 536 (963)
T PLN02563 459 TGEGVIVNSSS--SGLDINGLSSKEAAKKVIEWLEETGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPES 536 (963)
T ss_pred cCceeEecCCC--cccccCCcCHHHHHHHHHHHHHhCCCCCCeeEecCCCceEeeecccCCceEEEEEcCCCcEEecchH
Confidence 88899988642 1234899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcCCCCCCCCcCccCccccccccCCCCCCcccccCcccccccCCC
Q 008100 523 ELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW 577 (577)
Q Consensus 523 ~l~~~l~~~~~~~~~G~~~~~l~~~~~~v~~~~~~~g~~~~R~tDtmD~WfdSsW 577 (577)
+||+.||+++++.+.|.+.+||+++.+|+++.||+||+.++||||||||||||||
T Consensus 537 ~Lpv~lpe~~~~~~~~~g~~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Ssw 591 (963)
T PLN02563 537 DLPLTLPELDDFTPTGTGEPPLAKAVSWVNTVDPSSGKPARRETNTMPQWAGSCW 591 (963)
T ss_pred hCcccchhhhhcccCCCCCCchhcchhhhcCcCcCCCCCcEECCCcCCchhhccH
Confidence 9999999988887788888999999999999999999999999999999999999
No 2
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=3.3e-118 Score=1028.13 Aligned_cols=493 Identities=57% Similarity=1.055 Sum_probs=445.8
Q ss_pred CCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccc
Q 008100 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDA 143 (577)
Q Consensus 64 y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~ 143 (577)
|||.++|++||++|+++++|++.. +.++++||+++|||||||. |||||+++++++|+++||+||+||+|++++||||
T Consensus 1 y~~~~iE~kwq~~W~~~~~f~~~~--~~~k~k~~v~~~pPy~nG~-lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~ 77 (842)
T TIGR00396 1 YNHIEIEEKWQQKWKENKVFKFTD--DSNKPKYYILDMFPYPSGA-LHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDA 77 (842)
T ss_pred CCHHHHHHHHHHHHHhcCCcccCC--CCCCCCEEEEcCCCCCCCc-cccchhHHHHHHHHHHHHHHhcCCceeccCCcCC
Confidence 789999999999999999999763 4577889999999999998 9999999999999999999999999999999999
Q ss_pred cChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCC
Q 008100 144 FGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223 (577)
Q Consensus 144 ~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~ 223 (577)
||+|||++|++.|+.+.+++.++++.|+++|++||+++||+++|.|+||.|+++++++|.+|+++|+||++.++|+|||.
T Consensus 78 ~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~ 157 (842)
T TIGR00396 78 FGLPAENAAIKRGIHPAKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPN 157 (842)
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCchhhc-cCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCC-CCHHHHHHHHHhhhccCCceEEEEeecCC
Q 008100 224 LGTVLANEEVV-DGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-WPESVKEMQRNWIGRSEGAEMDFRVLDSD 301 (577)
Q Consensus 224 ~~t~Ls~~Ev~-~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~-~p~~~~~~~~~~i~~~~~~~~~f~l~~~~ 301 (577)
|+|+||++||+ +++|++||.+++.++++||||+|++|+++|+++++.+. ||++++.||+||||++.+++++|++.+.
T Consensus 158 ~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~s~g~~i~f~~~~~- 236 (842)
T TIGR00396 158 DGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKSEGVEITFKIADH- 236 (842)
T ss_pred CCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhcccccceEEEEEEcCCC-
Confidence 99999999996 47999999999999999999999999999999999875 9999999999999999999999998532
Q ss_pred CCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchhhhhhhhcccccccceEEecCC
Q 008100 302 GQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPA 381 (577)
Q Consensus 302 ~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~ 381 (577)
+.+|+||||||||||||+||||||+++|+..+.. ....+++|+......+.++.......++|.|.|.++.||+
T Consensus 237 ----~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~ 310 (842)
T TIGR00396 237 ----KEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAE--NNPKVAAFIKKILQKTTTERTKETKLKKGVFTGIKAIHPL 310 (842)
T ss_pred ----CCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhc--chHHHHHHHHHHhccCchhhhhhhcccccEecCCEEECCC
Confidence 3589999999999999999999999999766432 2233566665544444444444445678899999999999
Q ss_pred CCCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCCCccccccccccceEeccCccccccccC
Q 008100 382 SGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDIN 461 (577)
Q Consensus 382 ~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~ 461 (577)
+++.+||+.++||++++|||+||+|||||++||++|++|||+++++|++++.. ...+.|.+.|.++++. .++
T Consensus 311 ~~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~--~~~~~~~~~G~~~~~~------~~~ 382 (842)
T TIGR00396 311 TGEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKN--LKTQAFTEDGVLVNSG------EFN 382 (842)
T ss_pred CCCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCcccc--cccccccCCceEecch------hcC
Confidence 99999999999999999999999999999999999999999999999865421 1224577889988753 589
Q ss_pred CCCHHHHHHHHHHHHHhcCCCceeeeeccCcccccCcCccccccceEEECCCCeeeecCCCCCCCCCCCCCCcCCCCCCC
Q 008100 462 GLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGE 541 (577)
Q Consensus 462 g~~~~~a~~~ii~~l~~~g~~~~~~~~~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~~l~~~l~~~~~~~~~G~~~ 541 (577)
|+...+|+.+|+++|.+.|.+.+.++++++|||||||||||+|||||||++||. +++.+++||+.+|+...+ .|.+.
T Consensus 383 Gl~~~~A~~~Ii~~L~~~g~~~~~v~yrlrDW~ISRQRyWG~PIPi~~~~~~g~-~~v~~~~lp~~l~~~~~~--~~~~~ 459 (842)
T TIGR00396 383 GLNSSEAREAIIAMLEKEGKGKRKVNYRLRDWLFSRQRYWGEPIPIIHCEDGGA-VPVPEEDLPVILPELVNY--DPDGN 459 (842)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCceEEeecccceeecccccCCceEEEEECCCCe-EeCcchhcchhhhhhhhc--cCCCC
Confidence 999999999999999999999999999999999999999999999999999984 568888999999965444 45555
Q ss_pred CcCccCccccccccCCCCCCcccccCcccccccCCC
Q 008100 542 PPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW 577 (577)
Q Consensus 542 ~~l~~~~~~v~~~~~~~g~~~~R~tDtmD~WfdSsW 577 (577)
+|+..+.+|+.++||+||+.++|+||||||||||||
T Consensus 460 ~pl~~~~~~~~~~cp~cg~~~~retDtmDtw~dSsw 495 (842)
T TIGR00396 460 SPLSRIQEWVNVTCPSCGKPALRETDTMDTFAGSSW 495 (842)
T ss_pred CchhhhhhhhcCcCccCCCCcEeCCCCCCCcccCCH
Confidence 688899999999999999999999999999999998
No 3
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=3e-115 Score=1001.73 Aligned_cols=496 Identities=61% Similarity=1.106 Sum_probs=441.7
Q ss_pred ccCCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCccc
Q 008100 61 KRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMG 140 (577)
Q Consensus 61 ~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G 140 (577)
+.+|++.++|++||++|+++++|++.. +. +++||++++||||||. |||||+++++++|+++||+||+|++|++++|
T Consensus 2 ~~~y~~~~iE~~w~~~W~~~~~f~~~~--~~-~~~~~i~~~pPy~nG~-lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G 77 (805)
T PRK00390 2 MERYNPKEIEKKWQKYWEENKTFKTTE--DS-SKKYYVLDMFPYPSGG-LHMGHVRNYTIGDVIARYKRMQGYNVLHPMG 77 (805)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcccCc--cC-CCCEEEEccCCCCCCC-cchhhhHHHHHHHHHHHHHHhcCCcccccCc
Confidence 568999999999999999999999753 22 3479999999999998 9999999999999999999999999999999
Q ss_pred ccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCccc
Q 008100 141 WDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNW 220 (577)
Q Consensus 141 ~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w 220 (577)
|||||+|||.+|++.|+.+.+++.++++.|+++|++||+++||+++|.|+||.|++.++++|.+|+++|+||++.++|+|
T Consensus 78 ~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~w 157 (805)
T PRK00390 78 WDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNW 157 (805)
T ss_pred cCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCC-CCCHHHHHHHHHhhhccCCceEEEEeec
Q 008100 221 CPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDL-DWPESVKEMQRNWIGRSEGAEMDFRVLD 299 (577)
Q Consensus 221 c~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~-~~p~~~~~~~~~~i~~~~~~~~~f~l~~ 299 (577)
||.|+|+||++||++++|++||.+++.++++||||+|++|+++|+++++.+ .||++++.+|++|||++.+.+++|++.+
T Consensus 158 cp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig~~~~~~i~f~~~~ 237 (805)
T PRK00390 158 CPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIGRSEGAEVTFKVED 237 (805)
T ss_pred cCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhhccccceEEEEEEccC
Confidence 999999999999999999999999999999999999999999999999887 6999999999999999999999999864
Q ss_pred CCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchhhhhhhhcccccccceEEec
Q 008100 300 SDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARN 379 (577)
Q Consensus 300 ~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 379 (577)
. +.+++||||||||||||+||||||+++|+...... ...+++|+.......+++.......+.|.|.|.+|.|
T Consensus 238 ~-----~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~g~~~~~ 310 (805)
T PRK00390 238 S-----DEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQ--NPAVAAFIEECKKKSDLERQTETKEKTGVFTGLYAIH 310 (805)
T ss_pred C-----CCEEEEEeCCchHhhcceEEEECCCChhHHhhhcc--hHHHHHHHHHHhhhcchhhhhcccceeeeecCcEEEC
Confidence 2 35899999999999999999999999998765432 2335555544433333333222234456799999999
Q ss_pred CCCCCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCCCccccccccccceEeccCccccccc
Q 008100 380 PASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLD 459 (577)
Q Consensus 380 P~~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~ 459 (577)
|++++++||+.++||++++|||+||+|||||++||++|++|||+++++|+++|.........|.+.|.+.++. .
T Consensus 311 P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~~~------~ 384 (805)
T PRK00390 311 PLTGEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLINSG------E 384 (805)
T ss_pred CCCCCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEecc------c
Confidence 9999999999999999999999999999999999999999999999999875421111234577778887652 5
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCceeeeeccCcccccCcCccccccceEEECCCCeeeecCCCCCCCCCCCCCCcCCCCC
Q 008100 460 INGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGT 539 (577)
Q Consensus 460 ~~g~~~~~a~~~ii~~l~~~g~~~~~~~~~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~~l~~~l~~~~~~~~~G~ 539 (577)
++|+...+|+.+|++.|.+.|.++..++++++|||||||||||+|||||||++||+ +++.+++||+.+|+ .+.++|+
T Consensus 385 ~~Gl~~~~a~~~Ii~~L~~~g~~~~~v~~~l~DW~ISRQR~WG~PIPi~~~~~~g~-~~v~~~~l~~~l~~--~~~~~~~ 461 (805)
T PRK00390 385 LDGLDSEEAKEAIIAWLEEKGLGKRKVNYRLRDWGISRQRYWGEPIPIIHCEDCGI-VPVPEEDLPVVLPE--DVVPDGT 461 (805)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCceEEECCCccccccccCCCceeEEEECCCCc-eeCchHhhhhhhhh--hcccCCC
Confidence 89999999999999999999999999999999999999999999999999999984 55788899999885 3444566
Q ss_pred CCCcCccCccccccccCCCCCCcccccCcccccccCCC
Q 008100 540 GEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW 577 (577)
Q Consensus 540 ~~~~l~~~~~~v~~~~~~~g~~~~R~tDtmD~WfdSsW 577 (577)
+ .|+..+.+|++.+|++||+.++|++|||||||||||
T Consensus 462 ~-~~~~~~~~~~~~~~~~~g~~~~re~Dv~DtwfdSsw 498 (805)
T PRK00390 462 G-SPLAKHPEWVNVTCPKCGKPARRETDTMDTFVGSSW 498 (805)
T ss_pred C-ChhhhchhhhCCCccccCCCceeCCccccccccccc
Confidence 4 477889999999999999999999999999999998
No 4
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-107 Score=861.79 Aligned_cols=466 Identities=56% Similarity=0.965 Sum_probs=415.5
Q ss_pred hhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChH
Q 008100 68 EIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLP 147 (577)
Q Consensus 68 ~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glp 147 (577)
.||+.|+++|++...|.+. .+.+++| ||++|+|||+|. |||||.|.|++.|+++||+||+||+|++++|||.+|||
T Consensus 34 ~iEk~W~~~~~~~~~~~~~--~d~sk~K-YiLsMFPYPSG~-LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLP 109 (876)
T KOG0435|consen 34 MIEKHWKQYLKDGFPFSKD--SDKSKKK-YILSMFPYPSGA-LHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLP 109 (876)
T ss_pred HHHHHHHHHHhcCCccccc--cccCCCc-eEEEecCCCCCc-ccccceEEEEehHHHHHHHHhcCceeecCCcccccCCc
Confidence 6899999999999888753 4667788 788999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCcc
Q 008100 148 AEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTV 227 (577)
Q Consensus 148 ie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ 227 (577)
.|++|.+.|++|+.++..+|++|++||++||+++|||++..|++|+|++++||+|.+|+++||+|+.+..|||||.++|+
T Consensus 110 AENAAiergv~P~sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TV 189 (876)
T KOG0435|consen 110 AENAAIERGVHPASWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTV 189 (876)
T ss_pred hhhHHHhcCCCchhhhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhh-ccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCC-CCCHHHHHHHHHhhhccCCceEEEEeecCCCCCc
Q 008100 228 LANEEV-VDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDL-DWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQER 305 (577)
Q Consensus 228 Ls~~Ev-~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~-~~p~~~~~~~~~~i~~~~~~~~~f~l~~~~~~~~ 305 (577)
||++|| .+|+++++|+++++++++|||+++++|+++|+++|+.+ +||+ +++||+||||++.|..+.|+|.++.. .
T Consensus 190 LAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~-vk~mQrnWIG~~~G~el~F~ll~~~~--~ 266 (876)
T KOG0435|consen 190 LANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPE-VKDMQRNWIGRCDGAELMFPLLDDGS--N 266 (876)
T ss_pred ecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh-HHHHHHhhcccccceEEEEEeccCCC--C
Confidence 999999 68999999999999999999999999999999999998 7999 99999999999999999999987543 2
Q ss_pred cceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchhhhhhhhcccccccceEEecCCCCCe
Q 008100 306 DIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEA 385 (577)
Q Consensus 306 ~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~ 385 (577)
+..|.||||+|+||++.++|++.|+|.++.... .|++... ++++. .+ |.+.+.++.||++++.
T Consensus 267 de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~---------~lkefl~-~~~l~------~K-g~~lp~~A~Np~tg~~ 329 (876)
T KOG0435|consen 267 DEILTVYTTRPETLFGASFLVLAPSHSLLDKDS---------SLKEFLS-KSDLP------QK-GVQLPCQAKNPVTGRA 329 (876)
T ss_pred CceEEEEecCchhhccceEEEEcCCchhhhhhc---------hHHHhhh-hhhcc------cc-CcccceeeccCCCCce
Confidence 678999999999999999999999998653221 1221111 22222 13 6778899999999999
Q ss_pred eeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCCCccccccccccceEeccCccccccccCC-CC
Q 008100 386 IPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDING-LS 464 (577)
Q Consensus 386 ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~g-~~ 464 (577)
+||+.++||...+|||+|+.+|+|+.+|++++++-++..+.++... ++ +.|....+. ...| +.
T Consensus 330 iPv~~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~---f~-------~~~K~~~~~------~~tn~~~ 393 (876)
T KOG0435|consen 330 IPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVI---FT-------NFGKKNEQK------AFTNLDI 393 (876)
T ss_pred eeEEEechhccCCCcceeeeccCcccchhHHHhcccceeEEEEeee---ec-------chhhhhccc------cccchhH
Confidence 9999999999999999999999999999999999776655444221 11 111111111 1234 34
Q ss_pred HHHHHHHHHHHHHhcCCCceeeeeccCcccccCcCccccccceEEECCCCeeeecCCCCCCCCCCCCCCcCCCCCCCCcC
Q 008100 465 CQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPL 544 (577)
Q Consensus 465 ~~~a~~~ii~~l~~~g~~~~~~~~~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~~l~~~l~~~~~~~~~G~~~~~l 544 (577)
.+.|+.++++|.+..|.|+..++++++||.|||||||||||||++|++|| +++|++++||+.||++++|.++| .||
T Consensus 394 ~q~a~~~l~~~~~~~g~g~~~vs~kLkDWLiSRQRyWGTPIPivhc~~cG-~vpVpes~LPV~LP~l~~~~~kG---~Pl 469 (876)
T KOG0435|consen 394 RQNAALKLFQFAERKGVGGYVVSYKLKDWLISRQRYWGTPIPIVHCDDCG-AVPVPESELPVTLPELNDFTPKG---PPL 469 (876)
T ss_pred HHHHHHHHHHHHHhcCCCcceecchhhhhhhhhhhccCCCcceEEcCCCC-cccCcHHHCCcccccccccCCCC---Ccc
Confidence 55689999999999999999999999999999999999999999999998 89999999999999999998777 599
Q ss_pred ccCccccccccCCCCCCcccccCcccccccCCC
Q 008100 545 SKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW 577 (577)
Q Consensus 545 ~~~~~~v~~~~~~~g~~~~R~tDtmD~WfdSsW 577 (577)
..+.+|+.+.||+||++++|||||||||+||||
T Consensus 470 s~~~e~vn~~cP~cg~pAkRETDTMDTFvDSsW 502 (876)
T KOG0435|consen 470 SKADEWVNVDCPRCGEPAKRETDTMDTFVDSSW 502 (876)
T ss_pred cchhhheeccCccCCCcccccccccchhhccce
Confidence 999999999999999999999999999999999
No 5
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-105 Score=898.50 Aligned_cols=463 Identities=27% Similarity=0.429 Sum_probs=362.8
Q ss_pred hcccCCCchhhhHHHHHHHHHCCCccCCC-CCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccC
Q 008100 59 VVKRAYPFHEIEPKWQSYWENNRTFRTPD-EIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLH 137 (577)
Q Consensus 59 ~~~~~y~~~~iE~~~~~~W~~~~~f~~~~-~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~ 137 (577)
.++.+++++++|++++++|+++++|++.. +.++++++|+++|||||+||. +|||||+|+|+||++.||++|+||+|.+
T Consensus 13 ~fpmr~~l~~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~-iHiGHalnKilKDiI~Ry~~m~G~~v~~ 91 (933)
T COG0060 13 DFPMRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGN-IHIGHALNKILKDIIVRYKTMQGYDVPY 91 (933)
T ss_pred CCCccCChhhcCHHHHHHHHHhhHHHHHHHHHhCCCCcEEEeCCCCCCCCC-cchhhhHHHhhhhhhhhhhcccCCcCCC
Confidence 35677899999999999999999999987 467899999999999999998 9999999999999999999999999999
Q ss_pred cccccccChHHHHHHHH-hCCC---------------chhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHH
Q 008100 138 PMGWDAFGLPAEQYAIE-TGTH---------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWI 201 (577)
Q Consensus 138 ~~G~D~~Glpie~~a~~-~g~~---------------~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~ 201 (577)
+|||||||||||.++++ .|+. +++++.++++.|+++|+|||++.||+++|.|||+.|++.++++
T Consensus 92 ~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~ 171 (933)
T COG0060 92 VPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWA 171 (933)
T ss_pred CCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHH
Confidence 99999999999988875 4532 2456678899999999999999999999999999999999999
Q ss_pred HHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHH
Q 008100 202 FLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQ 281 (577)
Q Consensus 202 f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~ 281 (577)
|++|++||||||+.+||+|||+|+|+||++||+++..
T Consensus 172 f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d~------------------------------------------- 208 (933)
T COG0060 172 FKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDV------------------------------------------- 208 (933)
T ss_pred HHHHHHCCCeecCCeeeeecCCCCcchhhhhhccccc-------------------------------------------
Confidence 9999999999999999999999999999999987431
Q ss_pred HHhhhccCCceEEEEeecCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchh-
Q 008100 282 RNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLE- 360 (577)
Q Consensus 282 ~~~i~~~~~~~~~f~l~~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~- 360 (577)
.+++++|+|++.+. +...+.+++||||||||||||+|||||||.+|+.+.+..+.-...+........+...+
T Consensus 209 -----~dpSIyV~F~v~~~-~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~ 282 (933)
T COG0060 209 -----KDPSIYVKFPVKDE-GLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVED 282 (933)
T ss_pred -----CCceEEEEEEeccC-CCCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECCEEEEEhHHHHHHHHHHcCCcc
Confidence 35789999999864 23347899999999999999999999999999766555433233333332222111122
Q ss_pred hhhhhhcccccccceEEecCCCC----CeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcC-CeeEEeecCCCCCC
Q 008100 361 RTELQKEKTGVFSGCYARNPASG----EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFD-ISIHSVVMPDDESS 435 (577)
Q Consensus 361 ~~~~~~~~~~~~~G~~~~~P~~~----~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~-L~i~~~v~~~~~~~ 435 (577)
...+...++..|.|..|.|||.. +.+||+.+|||+.+.|||+||+|||||+|||.+|+++| ||++++||++| .+
T Consensus 283 ~~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G-~y 361 (933)
T COG0060 283 YEVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNG-RY 361 (933)
T ss_pred eEEeEEeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCCc-cc
Confidence 12234456668999999999985 89999999999999999999999999999999999999 79999999864 45
Q ss_pred ccccccccc----------------cceEeccC--------ccc------------cccccCCCCHHH-HHHHHHHHHHh
Q 008100 436 SQSEKAYTG----------------EGLIVNSS--------NLI------------SGLDINGLSCQE-ATSKVIEWAEK 478 (577)
Q Consensus 436 ~~~~~~~~~----------------~g~~v~~~--------~~~------------~~~~~~g~~~~~-a~~~ii~~l~~ 478 (577)
+++...|.| +|.|+... |++ |+..++.+..+- +..+.|+|+|+
T Consensus 362 t~~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~~v~w~P~ 441 (933)
T COG0060 362 TEEAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVPD 441 (933)
T ss_pred cccchhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEHHHHHHHHHHHHhcceEECh
Confidence 554444433 23333221 222 233333211111 12234667777
Q ss_pred cCCCcee-eeeccCcccccCcCccccccceEEECCCCeeeecCCCCCCCCCCCCCCcCCCCCCCCcCccCccccccccCC
Q 008100 479 TGNGKKK-VNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHS 557 (577)
Q Consensus 479 ~g~~~~~-~~~~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~~l~~~l~~~~~~~~~G~~~~~l~~~~~~v~~~~~~ 557 (577)
+|.++.. +..+++||||||||+||+|||||+|++||+++++.+|-+.+... .+...|.+.|+ .+..+-+..+|+.
T Consensus 442 ~~~~R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~---~~~~~g~~~w~-~~~idel~~~~~~ 517 (933)
T COG0060 442 WGKNRFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQ---LVEEKGIDDWH-RPDIDELLPPCPE 517 (933)
T ss_pred hHHHHHHHHHcCCCcceeeccccCCCceeEEEECCCCCeeccHHHHHHHHHH---HhhhcCchhhh-ccchHhhcCCCCC
Confidence 7754432 33478999999999999999999999999998764332222222 23345777644 4444444557878
Q ss_pred CCCCcccccCcccccccCC
Q 008100 558 SGKPARRETSTMPQWAGSC 576 (577)
Q Consensus 558 ~g~~~~R~tDtmD~WfdSs 576 (577)
||+.|+|++||||||||||
T Consensus 518 ~g~~~~rv~DvlDVWFDSG 536 (933)
T COG0060 518 DGKEYRRVPDVLDVWFDSG 536 (933)
T ss_pred CcceeEecCcceEEEEcCC
Confidence 9999999999999999885
No 6
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.6e-103 Score=875.91 Aligned_cols=496 Identities=54% Similarity=0.942 Sum_probs=456.2
Q ss_pred ccCCCchhhhHHHHHHHHHCCCccCCCCCCCCC-CcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcc
Q 008100 61 KRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSK-PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (577)
Q Consensus 61 ~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~-~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~ 139 (577)
+..|++.+||++||++|+++++|+... +.++ +|||+++|+|||||. |||||+|||++.||++||+||+||+|++++
T Consensus 2 ~~~y~~~~IE~KWQ~~W~e~~~Fe~~~--d~~~~~Kfyvl~mfPYpSG~-LHvGH~r~Yti~Dv~aRykRm~GyNVL~PM 78 (814)
T COG0495 2 MSRYNPREIEEKWQKRWEEAKVFEADE--DSDKPEKFYVLVMFPYPSGA-LHVGHVRNYTIGDVIARYKRMQGYNVLHPM 78 (814)
T ss_pred CcccchHHHHHHHHHHHHhcCCcccCC--CCCCCCceEEEeCCCCCCCC-cccCccccccHHHHHHHHHHhcCCeecccC
Confidence 467899999999999999999999763 3343 699999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcc
Q 008100 140 GWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVN 219 (577)
Q Consensus 140 G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~ 219 (577)
|||++|+|+|+.|++.+.+|+.+++.+++.|++||++||+++||+|.+.|+||+|++++||+|.+|+++||||++..+|+
T Consensus 79 GwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~Vn 158 (814)
T COG0495 79 GWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVN 158 (814)
T ss_pred cccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEeccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCC--CCHHHHHHHHHhhhccCCceEEEEe
Q 008100 220 WCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD--WPESVKEMQRNWIGRSEGAEMDFRV 297 (577)
Q Consensus 220 wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~--~p~~~~~~~~~~i~~~~~~~~~f~l 297 (577)
|||.|+|+|+++||.++.|++||.+++.++++||||+|++|+++|+++|+.+. ||+.|+.||+||||++.|..+.|.+
T Consensus 159 wcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~ 238 (814)
T COG0495 159 WCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVV 238 (814)
T ss_pred eCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHcCcCCCCCeEEEEec
Confidence 99999999999999999999999999999999999999999999999999887 9999999999999999999999998
Q ss_pred ecCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchhhhhhhhcccccccceEE
Q 008100 298 LDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYA 377 (577)
Q Consensus 298 ~~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 377 (577)
.+... ...+.|+||+|.|++|.+++++.|+++++..++..++...+.+|+......+..+......++.|.+.|.++
T Consensus 239 ~~~~~---~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g~~a 315 (814)
T COG0495 239 DGEEE---IVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLGGYA 315 (814)
T ss_pred CCccc---ceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeeccCCCcceeccccc
Confidence 43211 367999999999999999999999999998888776667778888777666666665555678889999999
Q ss_pred ecCCCCCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCCCccccccccccceEeccCccccc
Q 008100 378 RNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISG 457 (577)
Q Consensus 378 ~~P~~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~~~~~~~~~~~~g~~v~~~~~~~~ 457 (577)
.||++++.+||+.++||.+.+|||+||.+|||+++||++|++|+||+..+|...+. .....+.++|+++++.
T Consensus 316 ~~p~~~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~---~~~~~~~~~g~linS~----- 387 (814)
T COG0495 316 INPVNGEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGT---VGKKVYEGEGVLINSG----- 387 (814)
T ss_pred cCCCCCCcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCC---cccceeccCceEeccc-----
Confidence 99999999999999999999999999999999999999999999999999987654 3345577889999985
Q ss_pred cccCCCCHHHHHHHHHHHHHhcCCCceeeeeccCcccccCcCccccccceEEECCCCeeeecCCCCCCCCCCCCCCcCCC
Q 008100 458 LDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPT 537 (577)
Q Consensus 458 ~~~~g~~~~~a~~~ii~~l~~~g~~~~~~~~~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~~l~~~l~~~~~~~~~ 537 (577)
.++|+...++...++.++.+.+.++.+++|++|||++|||||||.||||++|+.|| .++++++.||+.+|+...+.++
T Consensus 388 -~~~gl~~e~a~~~~~~~l~~~~~~q~~v~Y~lrdW~~srqRywg~pipii~~e~~~-~~~~~~d~Lpv~lp~~~~~~gt 465 (814)
T COG0495 388 -GLDGLDYEEAKVKIRCGLVKRGLGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCG-VVPVPEDWLPVKLPERVRGLGT 465 (814)
T ss_pred -cccCcchhHHHHHHHHhHHHhcCCceEEecccchHHHHHHHHhCCCcceeEcccCC-cccCchHhcCcccccccccCCC
Confidence 47888888777888899999999999999999999999999999999999999986 7889999999999988777544
Q ss_pred CCCCCcCccCccccccccCCCCCCcccccCcccccccCCC
Q 008100 538 GTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW 577 (577)
Q Consensus 538 G~~~~~l~~~~~~v~~~~~~~g~~~~R~tDtmD~WfdSsW 577 (577)
| +||....+|+.++|+. ++++|+|||||+|++|||
T Consensus 466 ~---~pL~~~~~W~~~s~~~--s~~~ret~Tm~~~~~ssw 500 (814)
T COG0495 466 G---SPLPWDEEWVIESLPD--STAYRETDTMDTFIDSSW 500 (814)
T ss_pred C---CCCCCCcceEEEecCC--CceeeehhhhhHhccccc
Confidence 4 6999999999999986 789999999999999999
No 7
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.6e-96 Score=859.20 Aligned_cols=436 Identities=25% Similarity=0.379 Sum_probs=346.9
Q ss_pred hcccCCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCc
Q 008100 59 VVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHP 138 (577)
Q Consensus 59 ~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~ 138 (577)
.+++.|||.++|++||++|+++++|++..+.+.++++|++++||||+||. ||||||+|++++|+++||+||+||+|+++
T Consensus 6 ~~~~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~PPy~nG~-lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~ 84 (975)
T PRK06039 6 EVDSQPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGL-PHYGHLLTRTIKDVVPRYKTMKGYKVERR 84 (975)
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCCcccCccccCCCCCEEEeCCCCCCCCC-ccHhhhHhhHHHHHHHHHHHhCCCcccCc
Confidence 36789999999999999999999999765445678899999999999998 99999999999999999999999999999
Q ss_pred ccccccChHHHHHHHH-hCCC----------------chhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHH
Q 008100 139 MGWDAFGLPAEQYAIE-TGTH----------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWI 201 (577)
Q Consensus 139 ~G~D~~Glpie~~a~~-~g~~----------------~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~ 201 (577)
+||||||+|||.++++ +|+. +++++.++++.|++||++||+++||++.|.||||.|+++++|+
T Consensus 85 ~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~ 164 (975)
T PRK06039 85 AGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWA 164 (975)
T ss_pred CCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHH
Confidence 9999999999999986 4654 3567888999999999999999999999999999999999999
Q ss_pred HHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHH
Q 008100 202 FLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQ 281 (577)
Q Consensus 202 f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~ 281 (577)
|.+|+++||||++.++|+|||.|+|+||++||+++++++++
T Consensus 165 F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~--------------------------------------- 205 (975)
T PRK06039 165 LKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVKD--------------------------------------- 205 (975)
T ss_pred HHHHHHCCCEEecceeeeecCCCCCCccHHHHhhcccccCC---------------------------------------
Confidence 99999999999999999999999999999999876555433
Q ss_pred HHhhhccCCceEEEEeecCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchhh
Q 008100 282 RNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLER 361 (577)
Q Consensus 282 ~~~i~~~~~~~~~f~l~~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (577)
..++|+|++.+. .+.+++||||||||||||+||||||+++|+.+....+.-...+........ ...
T Consensus 206 -------~~~~v~f~l~~~----~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~-~~~-- 271 (975)
T PRK06039 206 -------PSVYVKFKLKGE----ENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLK-EDY-- 271 (975)
T ss_pred -------ceEEEEEEecCC----CCCEEEEEECCccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhh-ccc--
Confidence 346899998632 146999999999999999999999999997654332211111111111100 011
Q ss_pred hhhhhcccccccceEEecCCCC-----CeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCCCc
Q 008100 362 TELQKEKTGVFSGCYARNPASG-----EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSS 436 (577)
Q Consensus 362 ~~~~~~~~~~~~G~~~~~P~~~-----~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~~~ 436 (577)
..+...++..|.|+++.||++. +.+||+.++||++++|||+||+|||||++||++|++|||+++++||++|
T Consensus 272 ~~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G---- 347 (975)
T PRK06039 272 EVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDG---- 347 (975)
T ss_pred EEEeeecCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCc----
Confidence 1122334557899999999973 4799999999999999999999999999999999999999999998653
Q ss_pred cccccccccceEeccCccccccccCCCCHHHHHHHHHHHHHhcCCCce--------------------------------
Q 008100 437 QSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKK-------------------------------- 484 (577)
Q Consensus 437 ~~~~~~~~~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~~~-------------------------------- 484 (577)
.+..... .+.|+.+++|+.+|++.|.+.|...+
T Consensus 348 ----------~~~~~~~-----~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~~~ 412 (975)
T PRK06039 348 ----------RFTEEVP-----DYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTK 412 (975)
T ss_pred ----------eEcCCCc-----cccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEecHH
Confidence 2222111 46777778888888888877665311
Q ss_pred ----------eeee---------------ccCcccccCcCccccccceEEECCCCeeeecC-CCCCCCCCCCCCCcCCCC
Q 008100 485 ----------KVNY---------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLH-EAELPLTLPELDDFTPTG 538 (577)
Q Consensus 485 ----------~~~~---------------~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~-~~~l~~~l~~~~~~~~~G 538 (577)
+++| +++|||||||||||||||+|+|++||+..++. .++| .. ..|
T Consensus 413 ~k~~ll~~~~~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el-------~~--~~g 483 (975)
T PRK06039 413 IKDRMLELNQKINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEEL-------EE--LFG 483 (975)
T ss_pred HHHHHHHhhCCeEEECcccchhhHHHHHhcCccceeeeccccCCcceEEEecCCCeEEEeccHHHH-------HH--HhC
Confidence 0111 57899999999999999999999998766554 2222 11 112
Q ss_pred CCCC---cCccCccccccccCCCCCCcccccCcccccccCCC
Q 008100 539 TGEP---PLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW 577 (577)
Q Consensus 539 ~~~~---~l~~~~~~v~~~~~~~g~~~~R~tDtmD~WfdSsW 577 (577)
.+.. .+.+..+.+..+|+ ||+.|+|++|||||||||||
T Consensus 484 ~~~~~~~l~~~~~d~~~~~~~-~~~~~~r~~dVlDvWFdSg~ 524 (975)
T PRK06039 484 EDVEPIDLHRPYVDEVTLPCP-DGGTMRRVPDVIDVWFDSGS 524 (975)
T ss_pred CCcchhhhcccccccccccCC-CCcceEeccccccceeecCC
Confidence 2111 22234444566787 48889999999999999985
No 8
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-95 Score=848.39 Aligned_cols=441 Identities=26% Similarity=0.384 Sum_probs=342.8
Q ss_pred cccCCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcc
Q 008100 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (577)
Q Consensus 60 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~ 139 (577)
++.++++.++|++||++|+++++|++..+.+.++++|+|++||||+||. ||||||+|++++|+++||+||+||+|+|++
T Consensus 15 f~m~~~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPyanG~-lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~ 93 (912)
T PRK05743 15 FPMRANLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGD-IHIGHALNKILKDIIVKSKTMSGFDAPYVP 93 (912)
T ss_pred CCCCCChHHhhHHHHHHHHHCCCccccchhcCCCCcEEEeCCCCCCCCC-ccHHHHHHHHHHHHHHHHHHccCCcccCCC
Confidence 4456888899999999999999999764445678899999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHHHh------CCCch-------hhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHH
Q 008100 140 GWDAFGLPAEQYAIET------GTHPK-------ITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLL 206 (577)
Q Consensus 140 G~D~~Glpie~~a~~~------g~~~~-------~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~ 206 (577)
||||||+|||.++++. +..+. +++.++++.|++||++||+++||+++|+|+||.|++.++++|.+|+
T Consensus 94 G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~ 173 (912)
T PRK05743 94 GWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMA 173 (912)
T ss_pred CcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999874 33333 4678889999999999999999999999999999999999999999
Q ss_pred HCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHHHHhhh
Q 008100 207 KRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIG 286 (577)
Q Consensus 207 ~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~ 286 (577)
++|+||++.++|+|||.|+|+||++||++.. .
T Consensus 174 ~~Gliy~~~~~v~w~p~~~TaLad~Evey~~-~----------------------------------------------- 205 (912)
T PRK05743 174 KKGYLYKGLKPVYWCPDCGSALAEAEVEYHD-K----------------------------------------------- 205 (912)
T ss_pred HCCCEEecceeEecCCCcCCCchhhHhhccc-c-----------------------------------------------
Confidence 9999999999999999999999999998642 1
Q ss_pred ccCCceEEEEeecCCCC--CccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchhhhh-
Q 008100 287 RSEGAEMDFRVLDSDGQ--ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTE- 363 (577)
Q Consensus 287 ~~~~~~~~f~l~~~~~~--~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 363 (577)
.+..++|+|++.+.... ..+.+++||||||||||||+||||||+++|+...+..+.-...+++.........++...
T Consensus 206 ~s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~ 285 (912)
T PRK05743 206 TSPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYEV 285 (912)
T ss_pred cCceEEEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceEE
Confidence 12345788887542100 013689999999999999999999999999755443221112223322211111111111
Q ss_pred hhhcccccccceEEecCCCCCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCCCcccccccc
Q 008100 364 LQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYT 443 (577)
Q Consensus 364 ~~~~~~~~~~G~~~~~P~~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~~~~~~~~~~ 443 (577)
+...++..|.|+++.||++++.+|||.++||++++|||+||+|||||++||++|++|||+++++||++|
T Consensus 286 ~~~~~G~~l~g~~~~~Pl~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G----------- 354 (912)
T PRK05743 286 LATFKGKELEGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDG----------- 354 (912)
T ss_pred EEEechHhhcCCEEECCCCCCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCc-----------
Confidence 122334478999999999999999999999999999999999999999999999999999999998653
Q ss_pred ccceEeccCccccccccCCCCHHHHHHHHHHHHHhcCCCc----------------eee---------------------
Q 008100 444 GEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGK----------------KKV--------------------- 486 (577)
Q Consensus 444 ~~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~~----------------~~~--------------------- 486 (577)
.+..+.. .+.|+.+.+|+.+|++.|.+.|... ..+
T Consensus 355 ---~~~~~~~-----~~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~ 426 (912)
T PRK05743 355 ---RYTEEAP-----LFAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQA 426 (912)
T ss_pred ---eEecCCc-----ccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHH
Confidence 2222211 4677777888888888887776531 011
Q ss_pred -------e--------------eccCcccccCcCccccccceEEECCCCeeeecCCCCCCCCCCCCCCcCCCCCCCCcCc
Q 008100 487 -------N--------------YKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLS 545 (577)
Q Consensus 487 -------~--------------~~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~~l~~~l~~~~~~~~~G~~~~~l~ 545 (577)
+ .+++|||||||||||||||+|||++||++++ +++ ++..+++ .+...|++.|+-.
T Consensus 427 l~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~~g~~~~-~~~-~~~~i~~--~~~~~g~~~W~~~ 502 (912)
T PRK05743 427 LKAIEKVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIFYHKETGELHP-TPE-LIEHVAK--LFEKEGIDAWFEL 502 (912)
T ss_pred HHHHcccEEEChHHHHHHHHHHhcCcCccccccceeCceEEEEEECCCCcEee-cHH-HHHHHHH--HHHhhCCcccccc
Confidence 0 1358999999999999999999999997653 332 3222221 1223466655433
Q ss_pred cCccccccccCCCCCCcccccCcccccccCC
Q 008100 546 KAVSWVQTTEHSSGKPARRETSTMPQWAGSC 576 (577)
Q Consensus 546 ~~~~~v~~~~~~~g~~~~R~tDtmD~WfdSs 576 (577)
...++ |+.|+..|+|++||||||||||
T Consensus 503 ~~~~~----~~~~~~~~~~~~DvlDvWfdSg 529 (912)
T PRK05743 503 DAKEL----LPDEADEYEKETDILDVWFDSG 529 (912)
T ss_pred CHHHh----cCCcccCEEECCchhhhhhhhC
Confidence 33333 4447888999999999999994
No 9
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.3e-95 Score=848.38 Aligned_cols=450 Identities=24% Similarity=0.350 Sum_probs=341.0
Q ss_pred cccCCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcc
Q 008100 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (577)
Q Consensus 60 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~ 139 (577)
++.++++.++|++||++|+++++|++..+.+.++++|++++||||+||. ||||||+|++++|+++||+||+||+|+|++
T Consensus 20 f~m~~~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~-lHiGHaln~~lkDii~Ry~rm~G~~v~~~p 98 (961)
T PRK13804 20 FPMRAGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGN-IHIGHALNKILKDVIVRSKQMLGFDANYVP 98 (961)
T ss_pred CCCCCChHHhHHHHHHHHHHCCCccccccccCCCCcEEEeCCCCCCCCC-ccHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence 3446788899999999999999999865445678899999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHHHhC----CCc------------hhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHH
Q 008100 140 GWDAFGLPAEQYAIETG----THP------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFL 203 (577)
Q Consensus 140 G~D~~Glpie~~a~~~g----~~~------------~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~ 203 (577)
||||||+|||.++++.. +.. ++++.++++.|++||++||+++||+++|.||||.|+++++++|.
T Consensus 99 GwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~ 178 (961)
T PRK13804 99 GWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFG 178 (961)
T ss_pred CcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHH
Confidence 99999999999887643 322 34667788999999999999999999999999999999999999
Q ss_pred HHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHHHH
Q 008100 204 QLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRN 283 (577)
Q Consensus 204 ~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~~~ 283 (577)
+|+++|+|||+.+||+|||.|+|+||++||++.. .
T Consensus 179 ~l~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~~--~------------------------------------------- 213 (961)
T PRK13804 179 KFAAKGQLYRGSKPVMWSVVERTALAEAEIEYHD--I------------------------------------------- 213 (961)
T ss_pred HHHHCCCEEeCCcceecCCCCCCCccchhccccc--c-------------------------------------------
Confidence 9999999999999999999999999999997531 0
Q ss_pred hhhccCCceEEEEeecCCCC-CccceEEEecCCCCccccCcEEEEcCCCccchhhccc----------cchhhHHHHHHH
Q 008100 284 WIGRSEGAEMDFRVLDSDGQ-ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVST----------TQSQNIEEYKNL 352 (577)
Q Consensus 284 ~i~~~~~~~~~f~l~~~~~~-~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~----------~~~~~~~~~~~~ 352 (577)
.+.+++|+|++.+.+.. ..+.+++||||||||||||+||||||+++|+.+.+.. +.....+++...
T Consensus 214 ---~s~~~~v~F~~~~~~~~~~~~~~lviwTTtPwTl~an~aiav~p~~~Y~~v~~~~~~~~~~~~~~e~~iva~~~~~~ 290 (961)
T PRK13804 214 ---ESDTIWVKFPVKDGKGILDSGTYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDFWAKPGERLVVADALAES 290 (961)
T ss_pred ---cCceEEEEEEecCcccccCCCCeEEEEeCCchhhhhCeEEEECCCCceEEEEeccccccccccCCcEEEeHHHHHHH
Confidence 24567899998642110 0136899999999999999999999999997554432 111112222221
Q ss_pred Hhcccchhh-hhhhhcccccccceEEecCCCCC-----eeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCC-eeE
Q 008100 353 ASRKSDLER-TELQKEKTGVFSGCYARNPASGE-----AIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDI-SIH 425 (577)
Q Consensus 353 ~~~~~~~~~-~~~~~~~~~~~~G~~~~~P~~~~-----~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L-~i~ 425 (577)
......++. ..+...+++.|.|+++.||++++ .+|||.++||++++|||+||+|||||++||++|++||| |++
T Consensus 291 ~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~~~~ 370 (961)
T PRK13804 291 VAKKAGVESFERLADVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNVWMKYGRTEIP 370 (961)
T ss_pred HHHHhCCCCcEEEEEEEhhhccCCEEECCCCCcccccceeEEEecCccCCCCCCceEEeCCCCCHHHHHHHHHcCCCccc
Confidence 111111111 11223456689999999999998 89999999999999999999999999999999999999 999
Q ss_pred EeecCCCCCCccccccccccceEeccCccccccccCCCCHHHHHHHHHHHHHhcCCC-----------------------
Q 008100 426 SVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNG----------------------- 482 (577)
Q Consensus 426 ~~v~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~----------------------- 482 (577)
++||++| .+++....|.|..+ .++.|+...+|+.+|++.|.+.|..
T Consensus 371 ~~vd~~G-~~~~~~~~~~g~~v----------~~~~G~~~~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r 439 (961)
T PRK13804 371 VTVDEDG-FYTENAPGFGGARV----------IDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFR 439 (961)
T ss_pred ccCCCCe-EEccCCCccccccc----------cccCCcchhhhhHHHHHHHHhCCCcccccceecCCCccCCCCCeEEEe
Confidence 9998754 34433323222100 0244555555555555555544321
Q ss_pred -------------------------------------cee---eeeccCcccccCcCccccccceEEECCCCeeeecCCC
Q 008100 483 -------------------------------------KKK---VNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEA 522 (577)
Q Consensus 483 -------------------------------------~~~---~~~~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~ 522 (577)
+.+ +..+++||||||||+||||||+|||+ +|++++ +.+
T Consensus 440 ~t~QWFi~~~~~~~~~~~~k~~al~~i~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~-~~~~~~-~~~ 517 (961)
T PRK13804 440 NTPQWFISMDKDLGDGTTLRSRALDAIDKTRFVPAAGQNRLYNMIEDRPDWVISRQRAWGVPIPIFVAE-DGEILM-DEE 517 (961)
T ss_pred ccccccEEcCCcccchHHHHHHHHHHHhccEEECHHHHHHHHHHHhcCccceeeeeccCCceeeEEEcC-CCCEec-cHH
Confidence 000 01146899999999999999999996 577663 322
Q ss_pred CCCCCCCCCCCcCCCCCCCCcCccCccccccccCCCCCCcccccCcccccccC
Q 008100 523 ELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGS 575 (577)
Q Consensus 523 ~l~~~l~~~~~~~~~G~~~~~l~~~~~~v~~~~~~~g~~~~R~tDtmD~WfdS 575 (577)
.+.+. .+.+...|++.|+.....++++..+ .|+..++|++|||||||||
T Consensus 518 ~~~~~---~~~~~~~g~~~w~~~~~~~~~~~~~-~~~~~~~r~~DvlDvWFdS 566 (961)
T PRK13804 518 VNARI---ADAFEEEGADAWFAEGAKERFLGGF-HPNGEFTKVTDILDVWFDS 566 (961)
T ss_pred HHHHH---HHHHHhcCCccccccCHHHhcCccc-CcccceEecCcceeeeecC
Confidence 21111 1222345777776556666665321 2567899999999999999
No 10
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=5.2e-94 Score=836.29 Aligned_cols=454 Identities=25% Similarity=0.395 Sum_probs=349.6
Q ss_pred cccCCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcc
Q 008100 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (577)
Q Consensus 60 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~ 139 (577)
++..||+.++|++||++|+++++|++..+.+.++++|++++|||||||. ||||||+|++++|+++||+||+||+|++++
T Consensus 2 f~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~-lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~ 80 (861)
T TIGR00392 2 FPMRGNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGS-IHLGHALNKILKDIILRYKTMQGFNVTRKP 80 (861)
T ss_pred CCCCCChhHhhHHHHHHHHHCCchhhhhhccCCCCCeEEecCCCCCCCC-ccHHHHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 4567999999999999999999999764435577889999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHHHh-CCC------c----------hhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHH
Q 008100 140 GWDAFGLPAEQYAIET-GTH------P----------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIF 202 (577)
Q Consensus 140 G~D~~Glpie~~a~~~-g~~------~----------~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f 202 (577)
||||||+|||.+|++. |+. + ++++.++++.|++||++||+++||++.|.|+||.|+++++|+|
T Consensus 81 G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f 160 (861)
T TIGR00392 81 GWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLF 160 (861)
T ss_pred CcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHH
Confidence 9999999999999765 553 2 3567888999999999999999999999999999999999999
Q ss_pred HHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHHH
Q 008100 203 LQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQR 282 (577)
Q Consensus 203 ~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~~ 282 (577)
.+|+++|+||++.++|+|||.|+|+||++||+++.+++++
T Consensus 161 ~~l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~~---------------------------------------- 200 (861)
T TIGR00392 161 KEAHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDV---------------------------------------- 200 (861)
T ss_pred HHHHHCCCEeecceeeecCCCcCCcccHHHHhcccccccc----------------------------------------
Confidence 9999999999999999999999999999999876543321
Q ss_pred HhhhccCCceEEEEeecCCCC--Ccc-ceEEEecCCCCccccCcEEEEcCCCccchhhccccch--hhHHHHHHHHhccc
Q 008100 283 NWIGRSEGAEMDFRVLDSDGQ--ERD-IKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQS--QNIEEYKNLASRKS 357 (577)
Q Consensus 283 ~~i~~~~~~~~~f~l~~~~~~--~~~-~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~--~~~~~~~~~~~~~~ 357 (577)
++.+++|+|++.+.+.. ... .+++||||||||||||+||||||+++|+.......+. ...+++........
T Consensus 201 ----~~~~~~v~f~~~~~~~~~~~~~~~~l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~~~~~~ 276 (861)
T TIGR00392 201 ----KDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNLAIAVHPDFEYALVQDNTKVEYFILAKKLVEKLYNKA 276 (861)
T ss_pred ----cCceEEEEEEecCCcccccccccceEEEEECCcccccCCeeeeeCCCCceEEEEcCCCCcEEEEeHHHHHHHHHhc
Confidence 24667899998643210 001 2899999999999999999999999997654432111 11222222111111
Q ss_pred chhhhhhhhcccccccceEEecCCCCCee------eEEee-cccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecC
Q 008100 358 DLERTELQKEKTGVFSGCYARNPASGEAI------PIWVA-DYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMP 430 (577)
Q Consensus 358 ~~~~~~~~~~~~~~~~G~~~~~P~~~~~i------pIi~~-d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~ 430 (577)
..+...+...++..|.|+++.||++++.+ ||+.+ +||++++|||+||+|||||++||++|++|||+++++|++
T Consensus 277 ~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~p~v~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~vd~ 356 (861)
T TIGR00392 277 GSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVLSPVDE 356 (861)
T ss_pred CCceEEEeeecchhhCCCEEECCCCccccccccCCcEEeCCCCCCCCCCCceeEcCCCCCHHHHHHHHHcCCCcccccCC
Confidence 11111122334457899999999999888 97554 999999999999999999999999999999999998887
Q ss_pred CCCCCccccccccccceEeccCccccccccCCCCHHHHHHHHHHHHHhcCCCce--------------------------
Q 008100 431 DDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKK-------------------------- 484 (577)
Q Consensus 431 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~~~-------------------------- 484 (577)
+| .+......+.| .++ .+.|+...+|+.++++.|.+.|..-+
T Consensus 357 ~g-~~~~~~~~~~g--~~~---------~~~g~~~~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QW 424 (861)
T TIGR00392 357 KG-VYTEGVNDFQG--RFV---------KDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQW 424 (861)
T ss_pred Cc-eECCcCccccc--ccc---------ccCCccHHHhHHHHHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEecCccc
Confidence 54 22222222222 211 46788888999999999988875210
Q ss_pred ----------------eeee--------------ccCcccccCcCccccccceEEECCCCeeeecCCCCCCCCCCCCCCc
Q 008100 485 ----------------KVNY--------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDF 534 (577)
Q Consensus 485 ----------------~~~~--------------~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~~l~~~l~~~~~~ 534 (577)
++++ +++|||||||||||||||+|+|++||+.+++. .+.+.+. ..
T Consensus 425 Fi~~~~~k~~~l~~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~--~~~~~~~---~~ 499 (861)
T TIGR00392 425 FIKTKDIKDQMLEQIKKVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPIWYCEDTGEPIVVG--SIEELIE---LI 499 (861)
T ss_pred cEEcHHHHHHHHHHhCCcEEECchHHHHHHHHHhCCCcceeeccccCCCeeeEEEECCCCCCcCch--hHHHHHH---HH
Confidence 0111 37899999999999999999999998753221 1111111 01
Q ss_pred CCCCCCCCcCccCc---cccccccCCCCCCcccccCcccccccCC
Q 008100 535 TPTGTGEPPLSKAV---SWVQTTEHSSGKPARRETSTMPQWAGSC 576 (577)
Q Consensus 535 ~~~G~~~~~l~~~~---~~v~~~~~~~g~~~~R~tDtmD~WfdSs 576 (577)
...|.+.|+...+. +++..+|++| +.++|++|||||||||+
T Consensus 500 ~~~g~~~w~~~~~~~~~~~~~~~~~~~-~~~~r~~dvlDvWfdS~ 543 (861)
T TIGR00392 500 ELKGIDAWFEDLHRDFLDKITLKSGDG-GEYRRVPDVLDVWFDSG 543 (861)
T ss_pred HHhCCccccccchhhhcCchhccCCCC-cceEEccccccchhhcC
Confidence 12366666665555 4455667766 68999999999999994
No 11
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=8.5e-93 Score=834.97 Aligned_cols=438 Identities=24% Similarity=0.355 Sum_probs=334.4
Q ss_pred ccCCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCccc
Q 008100 61 KRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMG 140 (577)
Q Consensus 61 ~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G 140 (577)
.+.|||.++|++|+++|+++++|++..+.++++++|+|++||||+||. ||||||++++++|+++||+||+||+|++++|
T Consensus 5 ~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~-~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~G 83 (1159)
T PLN02882 5 GKDFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGL-PHYGHILAGTIKDIVTRYQSMTGHHVTRRFG 83 (1159)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEeCCCCCCCCc-chhhHHHHHHHHHHHHHHHHcCCCcccccCc
Confidence 467999999999999999999999875555678899999999999998 9999999999999999999999999999999
Q ss_pred ccccChHHHHHHH-HhCCCc----------------hhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHH
Q 008100 141 WDAFGLPAEQYAI-ETGTHP----------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFL 203 (577)
Q Consensus 141 ~D~~Glpie~~a~-~~g~~~----------------~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~ 203 (577)
|||||+|||.+++ ++|+.. ++++.++++.|++++++||+|+||+++|.|||+.|++.++|+|.
T Consensus 84 wD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~ 163 (1159)
T PLN02882 84 WDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFK 163 (1159)
T ss_pred cCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHH
Confidence 9999999999986 446542 34567888999999999999999999999999999999999999
Q ss_pred HHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHHHH
Q 008100 204 QLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRN 283 (577)
Q Consensus 204 ~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~~~ 283 (577)
+|+++|+||++.++|+|||.|+|+||++|++.++...
T Consensus 164 ~l~~kGliyr~~~~v~wcp~~~TaLs~~E~~~~Yk~~------------------------------------------- 200 (1159)
T PLN02882 164 QLFEKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKDV------------------------------------------- 200 (1159)
T ss_pred HHHHCCCEEecceeEeecCCCCCCcchhhhhhhcccC-------------------------------------------
Confidence 9999999999999999999999999999996433221
Q ss_pred hhhccCCceEEEEeecCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccch--hhH-HHHHHHHhcc----
Q 008100 284 WIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQS--QNI-EEYKNLASRK---- 356 (577)
Q Consensus 284 ~i~~~~~~~~~f~l~~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~--~~~-~~~~~~~~~~---- 356 (577)
.+.+++|+|++.+.. .+.+++||||||||||||+||||||+++|+.+.....+. ... ++|..+....
T Consensus 201 ---~~~si~v~F~l~~~~---~~~~l~iwTTtPwTLpsn~Al~VnP~~~Y~~v~~~~~~~~~i~a~~~~~~~~~~~~~~~ 274 (1159)
T PLN02882 201 ---SDPAVMVSFPIVGDP---DNASFVAWTTTPWTLPSNLALCVNPNFTYVKVRNKYTGKVYIVAESRLSALPTAKPKSK 274 (1159)
T ss_pred ---CCcEEEEEEEecCCC---CCcEEEEEeCCccccccCeEEEECCCCcEEEEEecCCCeEEEEhHHHHHHHHhhhhccc
Confidence 135678999997532 136999999999999999999999999997654321111 111 1222221110
Q ss_pred -c-----chh-hhhhhhcccccccceEEecCCC------CCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCC-
Q 008100 357 -S-----DLE-RTELQKEKTGVFSGCYARNPAS------GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDI- 422 (577)
Q Consensus 357 -~-----~~~-~~~~~~~~~~~~~G~~~~~P~~------~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L- 422 (577)
. ..+ ...+...++..|.|++|.+|+. ++.+||+.++||++++|||+||+|||||++||++|++|||
T Consensus 275 ~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~V~~~~GTGiVh~aPahG~~Dy~v~~~~gl~ 354 (1159)
T PLN02882 275 KGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAPAFGEDDYRVCLANGII 354 (1159)
T ss_pred ccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEEccCccCCCCCcceeEecCCCChhHHHHHHHcCCC
Confidence 0 011 1122334566899999987762 4589999999999999999999999999999999999999
Q ss_pred ----eeEEeecCCCCCCccccccccccceEeccCccccccccCCCCHHHHHHHHHHHHHhcCCCc---------------
Q 008100 423 ----SIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGK--------------- 483 (577)
Q Consensus 423 ----~i~~~v~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~~--------------- 483 (577)
+++++||++| .+++... .+.|+.+++|+.+|++.|++.|..-
T Consensus 355 ~~~~~~~~~vd~~G-~~~~~~~------------------~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~ 415 (1159)
T PLN02882 355 EKGGNLPVPVDDDG-CFTEKVT------------------DFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYPFCWRS 415 (1159)
T ss_pred ccccCccceECCCc-eEccCCc------------------ccCCCCHHHhhHHHHHHHHHCCCccceeeeecCCCEeeCC
Confidence 7999998754 3332221 3556666666666666666655310
Q ss_pred ---------------------------eeee---------------eccCcccccCcCccccccceEEECCCCeeeecCC
Q 008100 484 ---------------------------KKVN---------------YKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHE 521 (577)
Q Consensus 484 ---------------------------~~~~---------------~~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~ 521 (577)
.+++ .+++|||||||||||||||||+|++|++.+++..
T Consensus 416 ~tpli~~a~~qWFi~~~~~k~~~l~~~~~i~w~P~~~~~~r~~~wl~~~~DW~ISRqR~WGtPIPvw~~~~~~~~~~~~s 495 (1159)
T PLN02882 416 DTPLIYRAVPSWFVKVEEIKDRLLENNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPIWISDDGEEVVVIGS 495 (1159)
T ss_pred CCEEEEEecceeEEEcHHHHHHHHHhhCCcEEECCcchhhHHHHHHhcCcccceeeccccCCccceEEeCCCCeEEecCc
Confidence 0111 1578999999999999999999988776665542
Q ss_pred -CCCCCCCCCCCCcCCCCCCCCcCccCccccccccCCCC---CCcccccCcccccccCC
Q 008100 522 -AELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSG---KPARRETSTMPQWAGSC 576 (577)
Q Consensus 522 -~~l~~~l~~~~~~~~~G~~~~~l~~~~~~v~~~~~~~g---~~~~R~tDtmD~WfdSs 576 (577)
++|.-. . . ..+.+.+ .+..+-+..+|+ || +.|+|++||||||||||
T Consensus 496 ~~el~~~-~---~--~~~~dlh--~~~id~i~~p~~-~~~~~~~~~r~~dVlD~WFdSg 545 (1159)
T PLN02882 496 IAELEKL-S---G--VKVTDLH--RHFIDHITIPSS-RGPEFGVLRRVDDVFDCWFESG 545 (1159)
T ss_pred HHHHHHH-h---C--Cchhhcc--ccchhhhccccc-cCCchhceEecCceeeeeeccC
Confidence 222100 0 0 1122211 123333333443 33 37999999999999995
No 12
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=5.2e-93 Score=828.61 Aligned_cols=459 Identities=22% Similarity=0.354 Sum_probs=331.1
Q ss_pred CCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccc
Q 008100 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDA 143 (577)
Q Consensus 64 y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~ 143 (577)
-++.++|++||++|+++++|++..+.+ .+++|++++||||+||. ||||||+|++++|+++||+||+||+|+|++||||
T Consensus 3 ~~~~~~E~~~~~~W~~~~~y~~~~~~~-~~~~f~i~~~PPy~nG~-lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~ 80 (974)
T PLN02843 3 ANSVTREPEIQKLWEENQVYKRVSDRN-NGESFTLHDGPPYANGD-LHIGHALNKILKDFINRYQLLQGKKVHYVPGWDC 80 (974)
T ss_pred CChHHhhHHHHHHHHHCCCcccccccc-CCCCEEEeCCCCCCCCC-cchhHHHHHHHHHHHHHHHHhcCCccccCCccCC
Confidence 467789999999999999999864333 34669999999999998 9999999999999999999999999999999999
Q ss_pred cChHHHHHHHHh-C------CCc-------hhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCC
Q 008100 144 FGLPAEQYAIET-G------THP-------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 209 (577)
Q Consensus 144 ~Glpie~~a~~~-g------~~~-------~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kG 209 (577)
||+|||.++++. + ..+ ++++.++++.|+++|++||++.||+++|+||||.|++.++++|.+|+++|
T Consensus 81 hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~G 160 (974)
T PLN02843 81 HGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNG 160 (974)
T ss_pred CCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCC
Confidence 999999987542 2 122 34567788889999999999999999999999999999999999999999
Q ss_pred ceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHHHHhhhccC
Q 008100 210 LAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSE 289 (577)
Q Consensus 210 liy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~~~ 289 (577)
+||++.+||+|||+|+|+||++||++..... +.
T Consensus 161 lIyr~~kpV~Wcp~~~Talae~Evey~e~~~-----------------------------------------------~~ 193 (974)
T PLN02843 161 YIYRGRKPVHWSPSSRTALAEAELEYPEGHV-----------------------------------------------SK 193 (974)
T ss_pred CEEecceeeeecCCCCCcchHhHhcccCCcc-----------------------------------------------Cc
Confidence 9999999999999999999999998642111 23
Q ss_pred CceEEEEeecCCC-----C-C--ccceEEEecCCCCccccCcEEEEcCCCccchhhcccc--------------------
Q 008100 290 GAEMDFRVLDSDG-----Q-E--RDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTT-------------------- 341 (577)
Q Consensus 290 ~~~~~f~l~~~~~-----~-~--~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~-------------------- 341 (577)
.+||+|++.+... . . .+.+++||||||||||||+||||||+++|+.+.+..+
T Consensus 194 s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~AiaVnP~~~Y~~v~~~~~~~d~r~~~~~~~~~~~~~~~ 273 (974)
T PLN02843 194 SIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVNDKLQYSVVEVQSFSEDESTSGGNKKKRPGNVLK 273 (974)
T ss_pred eEEEEEEecCCccccccccccccccceEEEEeCcchhhccCcEEEECCCCceEEEEeccccccccccccccccccccccc
Confidence 4577777764210 0 0 1259999999999999999999999999976544310
Q ss_pred ---c--hhhHHHHHHHHhcccchhhhhhhhcccccccceEEecCCCCCeeeEEe-ecccccCCCCCceeccCCCChhhHH
Q 008100 342 ---Q--SQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWV-ADYVLGSYGTGAIMAVPAHDTRDHE 415 (577)
Q Consensus 342 ---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~ipIi~-~d~V~~~~GTGiVh~aPaHg~~Dy~ 415 (577)
. ....+.+..........+...+...++..|.|+++.||+.++.+||+. ++||++++|||+||+|||||++||+
T Consensus 274 ~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~pii~~~~~V~~~~GTG~Vh~aPaHg~~Dy~ 353 (974)
T PLN02843 274 EQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPLYNRESPVVIGGDYITTESGTGLVHTAPGHGQEDYI 353 (974)
T ss_pred cccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEECCCCCCceeEEecCCccCCCCCCCeEEeCCCCCHHHHH
Confidence 0 000111111100000111111223345589999999999999999975 8999999999999999999999999
Q ss_pred HHHHcCCeeEEeecCCCCCCcccccccccc-----------------ceEeccC--------ccccccccCC-------C
Q 008100 416 FALKFDISIHSVVMPDDESSSQSEKAYTGE-----------------GLIVNSS--------NLISGLDING-------L 463 (577)
Q Consensus 416 ~~~k~~L~i~~~v~~~~~~~~~~~~~~~~~-----------------g~~v~~~--------~~~~~~~~~g-------~ 463 (577)
+|++|||+++++||++| .+++....|.|. |.++... |++++..+.- +
T Consensus 354 ~~~~~~l~~~~~vd~~G-~~~~~~~~~~G~~v~~~a~~~Ii~~L~~~g~l~~~e~~~H~yp~cwR~~~pvi~r~t~QWFi 432 (974)
T PLN02843 354 TGLKYGLPLLSPVDDAG-KFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIFRATEQWFA 432 (974)
T ss_pred HHHHcCCCcccccCCCc-eEccCCcccCCcEehhcchHHHHHHHHHCCCeeeeeeecCCCCccCCCCCeEEEEecCceeE
Confidence 99999999999998764 343332223321 2222110 1111110000 0
Q ss_pred CHHHHHHHH------HHHHHhcCCCce-eeeeccCcccccCcCccccccceEEECCCCeeeecCCCCCCCCCCCCCCcCC
Q 008100 464 SCQEATSKV------IEWAEKTGNGKK-KVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTP 536 (577)
Q Consensus 464 ~~~~a~~~i------i~~l~~~g~~~~-~~~~~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~~l~~~l~~~~~~~~ 536 (577)
+..+.+.++ ++|+|+.+..+. .+..+++||||||||+||||||+|||++||+++. +.+.+.+... .+..
T Consensus 433 ~~~~~k~~al~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQr~WG~pIP~~~~~~~~~~~~-~~~~i~~~~~---~~~~ 508 (974)
T PLN02843 433 SVEGFRQAALDAIDKVKWIPAQGENRIRAMVSGRSDWCISRQRTWGVPIPVFYHVETKEPLM-NEETIAHVKS---IVAQ 508 (974)
T ss_pred eCHHHHHHHHHHHhccEEEChHHHHHHHHHHhcCcceeeeeccccccEEEEEEEcCCCCEee-chhhHHHHHH---HHHh
Confidence 001111111 233333322111 1112578999999999999999999999998763 3322222211 2233
Q ss_pred CCCCCCcCccCccccccccCCCCCCcccccCcccccccCC
Q 008100 537 TGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSC 576 (577)
Q Consensus 537 ~G~~~~~l~~~~~~v~~~~~~~g~~~~R~tDtmD~WfdSs 576 (577)
.|++.||-.+..++++..+..++..|+|++||||||||||
T Consensus 509 ~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg 548 (974)
T PLN02843 509 KGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSG 548 (974)
T ss_pred hCCcccccCCHHHhCcccccCchhhhEecccccccchhcC
Confidence 5888777666778877655444667999999999999994
No 13
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.9e-92 Score=784.06 Aligned_cols=383 Identities=33% Similarity=0.549 Sum_probs=319.1
Q ss_pred cccCCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcc
Q 008100 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (577)
Q Consensus 60 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~ 139 (577)
+.+.|||.++|++|+++|+++++|++.. +.+.++|+|..+||+++|. ||||||+++++.|+++||+||+||+|+|++
T Consensus 1 ~~~~ydp~~iE~k~~~~W~~~~~f~~~~--~~~~~~f~I~~PPPNVTG~-LHmGHAl~~tl~D~l~RykRM~G~~vl~~p 77 (877)
T COG0525 1 LPKTYDPKEIEEKWYKKWEESGYFKPDP--NEDKPPFSIDTPPPNVTGS-LHMGHALNYTLQDILARYKRMRGYNVLWPP 77 (877)
T ss_pred CCCCCChhhhhHHHHHHHHhcCCccCCC--CCCCCCcEEeCCCCCCCCc-ccchhhhhHHHHHHHHHHHHcCCCeeecCC
Confidence 3578999999999999999999998762 2221559999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHHH-h---CCCc------------hhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHH
Q 008100 140 GWDAFGLPAEQYAIE-T---GTHP------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFL 203 (577)
Q Consensus 140 G~D~~Glpie~~a~~-~---g~~~------------~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~ 203 (577)
||||+|+++|.++++ + |+.. .++.+++...|++||++||+++||++.++||||.+.++|+.+|.
T Consensus 78 G~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv 157 (877)
T COG0525 78 GTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFV 157 (877)
T ss_pred CCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHH
Confidence 999999999988764 2 5543 23456778889999999999999999999999999999999999
Q ss_pred HHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHHHH
Q 008100 204 QLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRN 283 (577)
Q Consensus 204 ~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~~~ 283 (577)
+||++|+|||+.++|||||.|+|+||+.||++.. ..|
T Consensus 158 ~Ly~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e--~~g----------------------------------------- 194 (877)
T COG0525 158 RLYEKGLIYRGERLVNWCPKCRTAISDIEVEYKE--VEG----------------------------------------- 194 (877)
T ss_pred HHHHCCceeecCCcccCCCccccchhhhhhccce--eee-----------------------------------------
Confidence 9999999999999999999999999999998631 111
Q ss_pred hhhccCCceEEEEeecCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchhhhh
Q 008100 284 WIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTE 363 (577)
Q Consensus 284 ~i~~~~~~~~~f~l~~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (577)
.-.+|+|++.++ +.+|+|+|||||||+|++||+|||+|+ +|+.
T Consensus 195 -----~L~~i~y~l~~~-----~~~i~VATTRPEtmlgdtAVaVhP~De---------------RYk~------------ 237 (877)
T COG0525 195 -----KLYYIKYPLADG-----DGYLVVATTRPETLLGDTAVAVHPDDE---------------RYKH------------ 237 (877)
T ss_pred -----eEEEEEEecCCC-----CceEEEEecCccccccceEEEECCCCh---------------hhHh------------
Confidence 114799999864 359999999999999999999999996 5654
Q ss_pred hhhcccccccceEEecCCCCCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCCCcccccccc
Q 008100 364 LQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYT 443 (577)
Q Consensus 364 ~~~~~~~~~~G~~~~~P~~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~~~~~~~~~~ 443 (577)
|+|+.+.+|+.++.+|||.++||++++|||+||+|||||++||+++++|+||+++++|++|. .++...
T Consensus 238 --------LvGk~v~lPl~~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~-in~~~~--- 305 (877)
T COG0525 238 --------LVGKEVILPLVGREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGR-INEEAA--- 305 (877)
T ss_pred --------hcCCEEecCCCCCeeeeecCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCe-eccCCc---
Confidence 47899999999999999999999999999999999999999999999999999999998643 221110
Q ss_pred ccceEeccCccccccccCCCCHHHHHHHHHHHHHhcCCCce---------------------------------------
Q 008100 444 GEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKK--------------------------------------- 484 (577)
Q Consensus 444 ~~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~~~--------------------------------------- 484 (577)
..+.||+..+|+.+|++.|++.|...+
T Consensus 306 --------------~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~ 371 (877)
T COG0525 306 --------------GEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALE 371 (877)
T ss_pred --------------cccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHH
Confidence 157788888888888888887775211
Q ss_pred -----eeee--------------ccCcccccCcCccccccceEEECCCCeeeecCCCCCCCCCCCCCCcCCCCCCCCcCc
Q 008100 485 -----KVNY--------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLS 545 (577)
Q Consensus 485 -----~~~~--------------~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~~l~~~l~~~~~~~~~G~~~~~l~ 545 (577)
++++ +++|||||||||||||||||||++||++++..+ +|.....
T Consensus 372 ~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g~v~v~~~--~~~~~~~--------------- 434 (877)
T COG0525 372 AVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEE--EPEDPAA--------------- 434 (877)
T ss_pred HHhcCCceEecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEecCCCcEEeCCc--cccchhh---------------
Confidence 1111 578999999999999999999999998774332 2221110
Q ss_pred cCccccccccCCCCCCcccccCcccccccCC
Q 008100 546 KAVSWVQTTEHSSGKPARRETSTMPQWAGSC 576 (577)
Q Consensus 546 ~~~~~v~~~~~~~g~~~~R~tDtmD~WfdSs 576 (577)
...|+. ..+.+++|||||||+||
T Consensus 435 ------~~~~~~--~~~~qd~DVLDTWFSS~ 457 (877)
T COG0525 435 ------AEKCPK--EELEQDEDVLDTWFSSS 457 (877)
T ss_pred ------hccCch--hcccCCcchhhhhhhcc
Confidence 123333 56899999999999996
No 14
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=1.9e-92 Score=829.25 Aligned_cols=471 Identities=18% Similarity=0.259 Sum_probs=328.7
Q ss_pred cccCCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcc
Q 008100 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (577)
Q Consensus 60 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~ 139 (577)
++..||+.++|++|+++|+++++|++..+.+.++++|+|++||||+||. ||||||++++++|+++||+||+||+|++++
T Consensus 68 ~~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~-lHiGHal~~tikDii~Ry~rm~G~~V~~~~ 146 (1205)
T PTZ00427 68 VSENPNIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGL-PHYGHLLAGIIKDCVTRYFYQCGFSVERKF 146 (1205)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEecCCCCCCCC-cchhHHHHHHHHHHHHHHHHcCCCeeccCC
Confidence 6678999999999999999999999875444567889999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHHH-hCCC----------------chhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHH
Q 008100 140 GWDAFGLPAEQYAIE-TGTH----------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIF 202 (577)
Q Consensus 140 G~D~~Glpie~~a~~-~g~~----------------~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f 202 (577)
||||||+|||.++++ +|+. +++++.++.+.|++++++||+|+||+++|+|||+.|++.++|+|
T Consensus 147 GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f 226 (1205)
T PTZ00427 147 GWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVF 226 (1205)
T ss_pred ccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHH
Confidence 999999999998875 3432 23456778899999999999999999999999999999999999
Q ss_pred HHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCC-cCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHH
Q 008100 203 LQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGG-HPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQ 281 (577)
Q Consensus 203 ~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~-~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~ 281 (577)
.+|+++|+||++.++|+|||.|+|+||++||..++.++.+ +.++.+++..=+-. +. .+.. .++ -+..
T Consensus 227 ~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l~~~~~~---~~-~~~~-~~~--~~~~----- 294 (1205)
T PTZ00427 227 SELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTPDPSIIISFVLCSDFPK---VE-EECN-IEE--DKQL----- 294 (1205)
T ss_pred HHHHHCCCEEecceeeccCCCCCCchhHHHhhcccccccCceEEEEeeccccccc---cc-cccc-ccc--cccc-----
Confidence 9999999999999999999999999999999544444333 33455443210000 00 0000 000 0000
Q ss_pred HHhhhccCCceEEEEeec--CC-C---------CCccceEEEecCCCCccccCcEEEEcCCCccchhhccccch------
Q 008100 282 RNWIGRSEGAEMDFRVLD--SD-G---------QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQS------ 343 (577)
Q Consensus 282 ~~~i~~~~~~~~~f~l~~--~~-~---------~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~------ 343 (577)
...-.++.|.+.+ +. + ...+.+++||||||||||||+||||||+++|+.+.......
T Consensus 295 -----~~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~ 369 (1205)
T PTZ00427 295 -----LGEKYSVLYNNKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGE 369 (1205)
T ss_pred -----cccceeeccccccccccccccccccccccCCCCEEEEEECCchhhhhceEEEECCCCeEEEEEecCCCeEEEEeh
Confidence 0000122222210 00 0 01246899999999999999999999999997654311111
Q ss_pred hhHHHHHHHHhc-ccchhhhhhhhcccccccceEEecCC---------CCCeeeEEeecccccCCCCCceeccCCCChhh
Q 008100 344 QNIEEYKNLASR-KSDLERTELQKEKTGVFSGCYARNPA---------SGEAIPIWVADYVLGSYGTGAIMAVPAHDTRD 413 (577)
Q Consensus 344 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~G~~~~~P~---------~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~D 413 (577)
..++.+...... ..+. ..+...++..+.|.+|.+|+ .++.+|||.++||++++|||+||+|||||++|
T Consensus 370 ~~~~~~~~~~~~~~~~~--~v~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~~~pVi~~d~V~~~~GTGiVh~aPahg~~D 447 (1205)
T PTZ00427 370 CRLEWIMKELKWNVEDL--KIVNRFKGKELKGLRYKPLFTNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDD 447 (1205)
T ss_pred HHHHHHHHhhccccccc--EEEEEeechhhCCCeeeCCccccccccccCCceeEEEccCccCCCCCceeeEecCCCChhH
Confidence 112222111000 0011 11223345578899888776 26689999999999999999999999999999
Q ss_pred HHHHHHcCC--e----eEEeecCCCCCCccccccccccceEeccCccccccccCCCCHHHHHHHHHHHHHhcCCCce---
Q 008100 414 HEFALKFDI--S----IHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKK--- 484 (577)
Q Consensus 414 y~~~~k~~L--~----i~~~v~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~~~--- 484 (577)
|++|++||| | ++++||++| .+++... .+.|+.+++|+.+|++.|++.|...+
T Consensus 448 y~v~~k~gL~~~~~~~~~~~vd~~G-~~~~~~~------------------~~~G~~v~dA~~~Ii~~Lk~~g~L~~~e~ 508 (1205)
T PTZ00427 448 FRVCKKNGVIDPEKNIFIDPLDANG-YFTNEVE------------------EVQNLYIKEADNVIKKKLKNENRLLSNNT 508 (1205)
T ss_pred HHHHHHcCCCCccccccccccCCCc-eecCCCc------------------ccCCCCHHHhHHHHHHHHHhCCCeeeeee
Confidence 999999999 2 677887653 2322211 35566666666666666666553100
Q ss_pred ---------------------------------------eee---------------eccCcccccCcCccccccceEEE
Q 008100 485 ---------------------------------------KVN---------------YKLRDWLFARQRYWGEPIPVVFL 510 (577)
Q Consensus 485 ---------------------------------------~~~---------------~~~~DWcISRQR~WG~PIPv~~~ 510 (577)
+++ .+++|||||||||||||||||+|
T Consensus 509 ~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~~~i~w~P~~~~~~r~~~wl~n~~DWcISRqR~WGtPIPvW~~ 588 (1205)
T PTZ00427 509 IVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNNETTYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIWAD 588 (1205)
T ss_pred eeccCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHcCCccEEeCchhhHhHHHHHHhcCccceeeeccccCccceeEEc
Confidence 111 15789999999999999999999
Q ss_pred CCCCeeeecCC-CCCCCCCCCCCCcCCCCCCCCcCccCccccccccCCCC--CCcccccCcccccccCC
Q 008100 511 DGTGETVPLHE-AELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSG--KPARRETSTMPQWAGSC 576 (577)
Q Consensus 511 ~~~g~~~~~~~-~~l~~~l~~~~~~~~~G~~~~~l~~~~~~v~~~~~~~g--~~~~R~tDtmD~WfdSs 576 (577)
++||+.+++.. ++|.- ++. ..|.++ .+.+..+-+...||.++ ..|+|++||||||||||
T Consensus 589 ~~~~~~~~i~s~~el~~-~~~-----~~~~~d-lh~~~iD~~~~~~~~g~~~~~~~r~~DVlD~WFdSg 650 (1205)
T PTZ00427 589 EKMETVICVESIKHLEE-LSG-----VKNIND-LHRHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESG 650 (1205)
T ss_pred CCCCeEeccCCHHHHHH-Hhc-----cccchh-hcccccChhhccCCccccccceeecCceEEEEEeCC
Confidence 98887665542 11110 000 011111 11122222233455321 25999999999999994
No 15
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=3.7e-93 Score=798.36 Aligned_cols=420 Identities=33% Similarity=0.590 Sum_probs=313.2
Q ss_pred HHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHH
Q 008100 72 KWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQY 151 (577)
Q Consensus 72 ~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~ 151 (577)
+||++|+++++|++..+.++++++|++++||||+||. ||||||+|++++|+++||+||+||+|++++||||||+|||.+
T Consensus 1 k~~~~W~~~~~~~~~~~~~~~~~~f~i~~~PPy~nG~-lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~ 79 (601)
T PF00133_consen 1 KWQKFWEENKLFEKQLEKNKNKPKFFIHDPPPYANGD-LHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAK 79 (601)
T ss_dssp HHHHHHHHTTCCHHHHHCTTTSGEEEEEE---BTSSS--BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHH
T ss_pred CHhHHHhhCCCcccccccCCCCCcEEEEeCCCCCCCc-ccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhh
Confidence 6999999999999875556778999999999999998 999999999999999999999999999999999999999998
Q ss_pred HHHh-CCC----------------chhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeee
Q 008100 152 AIET-GTH----------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (577)
Q Consensus 152 a~~~-g~~----------------~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~ 214 (577)
+++. +.. +++++.++++.|++||++||+++||++.|.|+||.|+++++++|.+|+++|+||++
T Consensus 80 vek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~ 159 (601)
T PF00133_consen 80 VEKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRG 159 (601)
T ss_dssp HHHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEee
Confidence 8763 432 23566778899999999999999999999999999999999999999999999999
Q ss_pred ccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHHHHhhhccCCceEE
Q 008100 215 EVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMD 294 (577)
Q Consensus 215 ~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~~~~~~~~ 294 (577)
.++|+|||.|+|+||++||++... .+..++|+
T Consensus 160 ~~pv~w~p~~~t~lsd~Ev~~~~~------------------------------------------------~~~~~~v~ 191 (601)
T PF00133_consen 160 KKPVNWCPSCQTALSDHEVEYKEV------------------------------------------------KSPSIYVK 191 (601)
T ss_dssp EEEEEEETTTTEEE-GGGEEEEEE------------------------------------------------EEEEEEEE
T ss_pred CCCCCcCcccccchhhhhcccccc------------------------------------------------cCceEEEE
Confidence 999999999999999999975311 12346899
Q ss_pred EEeecCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchhhhhhhhcccccccc
Q 008100 295 FRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSG 374 (577)
Q Consensus 295 f~l~~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 374 (577)
|++.+.+ +.+|+||||||||||||+||+|||+.+|+ ...+.....+............ .+....+..|.|
T Consensus 192 f~~~~~~----~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~---~~~~~~i~~~~~~~~~~~~~~~---~~~~~~g~~L~g 261 (601)
T PF00133_consen 192 FPLKDGE----EVYLVIWTTRPETLPGNTAIAVNPDFDYV---INGERYIVAKDLVEKLSKQEKT---KLEDFRGKELVG 261 (601)
T ss_dssp EEESSSS----EEEEEEEES-GGGGGG-BEEEE-TTSEEE---ETTEEEEEEHHHHHHHHTTTSS---SEEEEECHHHTT
T ss_pred EEecCcc----ceEEEEEechhhHHhCCeeEEECCCccce---eCCeeehHHHHHHHHHHhhhhh---cccccCcceecC
Confidence 9997542 36999999999999999999999999987 2222212222222221111111 133345557999
Q ss_pred eEEecCCCCCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCCCccccccccccceEeccCcc
Q 008100 375 CYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNL 454 (577)
Q Consensus 375 ~~~~~P~~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~~~~~~~~~~~~g~~v~~~~~ 454 (577)
+++.||++++.+|||+++||++++|||+||+|||||++||++|++|+|+++++||++|. +.+..
T Consensus 262 ~~~~~P~~~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~G~-~~~~~--------------- 325 (601)
T PF00133_consen 262 LKYIHPLTGREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDEDGR-FTEEA--------------- 325 (601)
T ss_dssp SEEE-TTSSSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCTST-BBSCC---------------
T ss_pred cEeccccccceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCceeeEecCCCce-Eeecc---------------
Confidence 99999999999999999999999999999999999999999999999999999987643 32211
Q ss_pred ccccccCCCCHHHHHHHHHHHHHhcCCCcee------------------------------------------ee-----
Q 008100 455 ISGLDINGLSCQEATSKVIEWAEKTGNGKKK------------------------------------------VN----- 487 (577)
Q Consensus 455 ~~~~~~~g~~~~~a~~~ii~~l~~~g~~~~~------------------------------------------~~----- 487 (577)
..+.|+.+.+|+.+|++.|.+.|..... ++
T Consensus 326 ---~~~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~~i~~~P~~ 402 (601)
T PF00133_consen 326 ---GKFKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALEKIKFYPES 402 (601)
T ss_dssp ---STTTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHHTSEESSST
T ss_pred ---cccCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHHhHHHHHhhcccceEEccc
Confidence 1577888888888888888887752110 00
Q ss_pred ---------eccCcccccCcCccccccceEEECCCCeeeecCCCCCCCCCCCCCCcCCCCCCCCcCccCccccccccCCC
Q 008100 488 ---------YKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSS 558 (577)
Q Consensus 488 ---------~~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~~l~~~l~~~~~~~~~G~~~~~l~~~~~~v~~~~~~~ 558 (577)
.+++|||||||||||||||+|+|++|++.. +.++.+++.... ....|.+.++..+..+.+ +.|
T Consensus 403 ~~~~~~~~i~~l~DWcISRQR~WG~PIPiw~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~ 474 (601)
T PF00133_consen 403 YRKRFENWIDNLRDWCISRQRYWGTPIPIWYCEDCGEVL-VIESTIELIADR---VEKEGIDAWLHKPAEDKL----PCC 474 (601)
T ss_dssp CHHHHHHHHHT--EEE-EESSSSSEBETEEEETTSEEEE-CCGGHHHHHHHH---STHHHHSCTSSHHHHHHH----TTT
T ss_pred chhhhhhhccccccchhhccCCCCccceeeecccCcccc-cccccccccccc---cccccccccccccccccc----ccc
Confidence 146899999999999999999999998655 332322222111 112233333333344444 578
Q ss_pred CCCcccccCcccccccCCC
Q 008100 559 GKPARRETSTMPQWAGSCW 577 (577)
Q Consensus 559 g~~~~R~tDtmD~WfdSsW 577 (577)
++.++|++|||||||||||
T Consensus 475 ~~~~~~~~dvlD~WfdSg~ 493 (601)
T PF00133_consen 475 GGELRRDTDVLDTWFDSGL 493 (601)
T ss_dssp SSEEEEHS-EE-HHHHHCT
T ss_pred ccceEEeeeeccccccccC
Confidence 8999999999999999975
No 16
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.8e-90 Score=803.60 Aligned_cols=403 Identities=26% Similarity=0.426 Sum_probs=316.7
Q ss_pred hhcccCCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccC
Q 008100 58 QVVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLH 137 (577)
Q Consensus 58 ~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~ 137 (577)
+.+++.|||.+ |++||++|+++++|++.. +.++++|+|+++|||+||. ||||||+|++++|+++||+||+||+|+|
T Consensus 55 ~~~~~~y~~~~-E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~pPP~~tG~-lHiGHa~~~~~~D~~~Ry~rm~G~~vl~ 130 (958)
T PLN02943 55 PETAKSFDFTS-EERIYNWWESQGYFKPNF--DRGGDPFVIPMPPPNVTGS-LHMGHAMFVTLEDIMVRYNRMKGRPTLW 130 (958)
T ss_pred cccCCCCChhh-hHHHHHHHHHCCCcccCc--ccCCCCEEEecCCCCCCCc-hhHHHHHHHHHHHHHHHHHHhcCCeeec
Confidence 46889999999 999999999999999763 3457789999999999998 9999999999999999999999999999
Q ss_pred cccccccChHHHHHHHH----hCCCch------------hhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHH
Q 008100 138 PMGWDAFGLPAEQYAIE----TGTHPK------------ITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWI 201 (577)
Q Consensus 138 ~~G~D~~Glpie~~a~~----~g~~~~------------~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~ 201 (577)
++||||||+|+|.++++ .|+.+. ++++++++.|++||++||+++||++.|+|+|+.|.++++++
T Consensus 131 ~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~ 210 (958)
T PLN02943 131 IPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEA 210 (958)
T ss_pred CCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHH
Confidence 99999999999987654 255432 34567889999999999999999999999999999999999
Q ss_pred HHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHH
Q 008100 202 FLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQ 281 (577)
Q Consensus 202 f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~ 281 (577)
|.+|+++|||||+.++|+|||.|+|+||++||++.. ..
T Consensus 211 F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e--~~---------------------------------------- 248 (958)
T PLN02943 211 FVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE--EP---------------------------------------- 248 (958)
T ss_pred HHHHHHCCCEEecCceeccCCCCCCCcCHHHhhccc--cc----------------------------------------
Confidence 999999999999999999999999999999997531 11
Q ss_pred HHhhhccCCceEEEEeecCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchhh
Q 008100 282 RNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLER 361 (577)
Q Consensus 282 ~~~i~~~~~~~~~f~l~~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (577)
+...+++|++.+.+ +.+++|||||||||+||+||||||+++ +|..
T Consensus 249 ------~~~~~i~f~l~~~~----~~~l~vaTTrPeTl~~~~avavnP~d~---------------ry~~---------- 293 (958)
T PLN02943 249 ------GTLYYIKYRVAGGS----EDFLTIATTRPETLFGDVAIAVNPEDD---------------RYSK---------- 293 (958)
T ss_pred ------ccEEEEEEEEcCCC----CCEEEEEeCChhhhhcceEEEECCCCH---------------HHHH----------
Confidence 23358999996431 258999999999999999999999996 3422
Q ss_pred hhhhhcccccccceEEecCCC-CCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCCCccccc
Q 008100 362 TELQKEKTGVFSGCYARNPAS-GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEK 440 (577)
Q Consensus 362 ~~~~~~~~~~~~G~~~~~P~~-~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~~~~~~~ 440 (577)
+.|.++.||++ ++.+|||.++||++++|||+||+|||||++||++|++||||++++||++|. +++...
T Consensus 294 ----------l~g~~~~~Pl~~~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~-~~~~~g 362 (958)
T PLN02943 294 ----------YIGKMAIVPMTYGRHVPIIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT-LNEVAG 362 (958)
T ss_pred ----------HcCCEEECCCcCCCeeeEEecCcccCCCCCceEEeCCCCChHHHHHHHHcCCCceeeeCCCce-eeccCC
Confidence 36889999996 999999999999999999999999999999999999999999999987643 433221
Q ss_pred c------------ccccceEeccC--------ccccccccCCC-------CHHHHHHHHHHHHHhcCCC------ce---
Q 008100 441 A------------YTGEGLIVNSS--------NLISGLDINGL-------SCQEATSKVIEWAEKTGNG------KK--- 484 (577)
Q Consensus 441 ~------------~~~~g~~v~~~--------~~~~~~~~~g~-------~~~~a~~~ii~~l~~~g~~------~~--- 484 (577)
. ++..|.++... |.+++..++.+ ...+.+.++++++.+.... ++
T Consensus 363 ~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~ 442 (958)
T PLN02943 363 LYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGELTIIPERFEKIYN 442 (958)
T ss_pred ccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEeccceeEEHHHHHHHHHHHHhcCCcEEEChHHHHHHH
Confidence 1 23445554321 22333222221 1223444555555321000 00
Q ss_pred eeeeccCcccccCcCccccccceEEE--CCCCeeeecCCCCCCCCCCCCCCcCCCCCCCCcCccCccccccccCCCCCC-
Q 008100 485 KVNYKLRDWLFARQRYWGEPIPVVFL--DGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKP- 561 (577)
Q Consensus 485 ~~~~~~~DWcISRQR~WG~PIPv~~~--~~~g~~~~~~~~~l~~~l~~~~~~~~~G~~~~~l~~~~~~v~~~~~~~g~~- 561 (577)
.+..+++|||||||||||||||+||| .+||+...+.... .+++...|++||..
T Consensus 443 ~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~------------------------~~~~~~~~~~~g~~~ 498 (958)
T PLN02943 443 HWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSA------------------------EEALEKAREKYGKDV 498 (958)
T ss_pred HHHhcCccceEEEecCCCCccCceeccccCCCceEEecCcH------------------------HHHHHHhhhhcCCch
Confidence 11126899999999999999999998 5676533222110 12222234566654
Q ss_pred -cccccCcccccccCC
Q 008100 562 -ARRETSTMPQWAGSC 576 (577)
Q Consensus 562 -~~R~tDtmD~WfdSs 576 (577)
++|++||||||||||
T Consensus 499 ~~~~~~DVlDtWFdS~ 514 (958)
T PLN02943 499 EIYQDPDVLDTWFSSA 514 (958)
T ss_pred heeecCceEEEEEcCc
Confidence 899999999999997
No 17
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=3.9e-89 Score=802.93 Aligned_cols=417 Identities=26% Similarity=0.387 Sum_probs=326.1
Q ss_pred hcccCCCchhhhHHHHHHHHHCCCccCCC--CCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCccc
Q 008100 59 VVKRAYPFHEIEPKWQSYWENNRTFRTPD--EIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVL 136 (577)
Q Consensus 59 ~~~~~y~~~~iE~~~~~~W~~~~~f~~~~--~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~ 136 (577)
.+++.|||.++|++||++|+++++|++.. +.+.++++|+|++||||+||. ||||||++++++|+++||+||+|++|+
T Consensus 23 ~~~~~yd~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~f~i~~ppP~~~G~-lHiGHa~~~~~~D~~~Ry~rm~G~~v~ 101 (995)
T PTZ00419 23 SMAASYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGY-LHIGHALTGAIQDSLIRYHRMKGDETL 101 (995)
T ss_pred hcCCCCCHHHHHHHHHHHHHHCCCcccCccccccCCCCeEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 37889999999999999999999998742 124567889999999999998 999999999999999999999999999
Q ss_pred CcccccccChHHHHHHHH-----hCCCc------------hhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHH
Q 008100 137 HPMGWDAFGLPAEQYAIE-----TGTHP------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQ 199 (577)
Q Consensus 137 ~~~G~D~~Glpie~~a~~-----~g~~~------------~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~ 199 (577)
|++||||||+|++.++++ .|..+ .+++.++++.|++||++||+++||+++|+|+|+.|.+.++
T Consensus 102 ~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~ 181 (995)
T PTZ00419 102 WVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVK 181 (995)
T ss_pred CCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHH
Confidence 999999999999665433 24332 2457888999999999999999999999999999999999
Q ss_pred HHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHH
Q 008100 200 WIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKE 279 (577)
Q Consensus 200 ~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~ 279 (577)
++|.+|+++|+||++.++|+|||.|+|+||++||++. +..+.. +++++.|.+.+.
T Consensus 182 ~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~--~~~~~~---------~~~~~~~~~~~~-------------- 236 (995)
T PTZ00419 182 EAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFE--EIEKPT---------KITIPGYDKKVE-------------- 236 (995)
T ss_pred HHHHHHHHCCCEEecceeeecCCCCCCCCchhhcccc--cccccc---------eeeccccccccc--------------
Confidence 9999999999999999999999999999999999753 111111 233444432210
Q ss_pred HHHHhhhccCCceEEEEeecCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccch
Q 008100 280 MQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDL 359 (577)
Q Consensus 280 ~~~~~i~~~~~~~~~f~l~~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (577)
.+.-.+++|++.+.+ +.+|+|||||||||+||+||||||++++ |.
T Consensus 237 -------~g~l~~i~f~l~~~~----~~~l~vaTTrPeTl~g~~avav~P~d~~---------------y~--------- 281 (995)
T PTZ00419 237 -------VGVLWHFAYPLEDSG----QEEIVVATTRIETMLGDVAVAVHPKDER---------------YK--------- 281 (995)
T ss_pred -------cceeEEEEEeecCCC----CcEEEEEeCCcchhhhCeEEEECCCCcH---------------HH---------
Confidence 001136889886421 1389999999999999999999999863 32
Q ss_pred hhhhhhhcccccccceEEecCC-CCCeeeEEeec-ccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCCCcc
Q 008100 360 ERTELQKEKTGVFSGCYARNPA-SGEAIPIWVAD-YVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQ 437 (577)
Q Consensus 360 ~~~~~~~~~~~~~~G~~~~~P~-~~~~ipIi~~d-~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~~~~ 437 (577)
.|.|.++.||+ +++.+|||.++ ||++++|||+||+|||||++||++|++||||++++|+++|. +++
T Consensus 282 -----------~l~G~~~~~Pl~~~~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~G~-~~~ 349 (995)
T PTZ00419 282 -----------KLHGKELIHPFIPDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGK-INE 349 (995)
T ss_pred -----------HhcCCEEECCccCCCEEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCCCce-EcC
Confidence 24689999999 89999999999 99999999999999999999999999999999999986532 211
Q ss_pred ccccccccceEeccCccccccccCCCCHHHHHHHHHHHHHhcCCCcee--------------------------------
Q 008100 438 SEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK-------------------------------- 485 (577)
Q Consensus 438 ~~~~~~~~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~~~~-------------------------------- 485 (577)
.. ..+.|+.+.+|+.+|++.|.+.|...+.
T Consensus 350 -------------~~-----~~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~ 411 (995)
T PTZ00419 350 -------------NG-----GEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDM 411 (995)
T ss_pred -------------CC-----cccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHH
Confidence 11 1467788888888888888877653211
Q ss_pred ------------eee--------------ccCcccccCcCccccccceEEECCCCeeeecCCCCCCCCCCCCCCcCCCCC
Q 008100 486 ------------VNY--------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGT 539 (577)
Q Consensus 486 ------------~~~--------------~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~~l~~~l~~~~~~~~~G~ 539 (577)
+.+ +++|||||||||||||||+|||++||. +++++...+..+...
T Consensus 412 ~~~al~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~~-~~~~~~~~~~~~~~~-------- 482 (995)
T PTZ00419 412 AKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGP-ETDPSDEEPWVVARS-------- 482 (995)
T ss_pred HHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeEEEeCCCCc-cccCCCCceEEEcCC--------
Confidence 111 578999999999999999999999983 333222111111100
Q ss_pred CCCcCccCccccccccCCCCCCcccccCcccccccCCC
Q 008100 540 GEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW 577 (577)
Q Consensus 540 ~~~~l~~~~~~v~~~~~~~g~~~~R~tDtmD~WfdSsW 577 (577)
...++.....+ ..|+.|+..++|++|||||||||||
T Consensus 483 ~~~~~~~~~~~--~~~~~~~~~~~~~~DVlDtWFdS~l 518 (995)
T PTZ00419 483 EEEALEKAKKK--FGLSEEDFELEQDEDVLDTWFSSGL 518 (995)
T ss_pred HHHHHhhhccc--cCCccccCCeEECCceEEEEEeCCH
Confidence 00011111111 1245567789999999999999985
No 18
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.9e-88 Score=792.74 Aligned_cols=382 Identities=29% Similarity=0.503 Sum_probs=316.7
Q ss_pred hhhcccCCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCccc
Q 008100 57 QQVVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVL 136 (577)
Q Consensus 57 ~~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~ 136 (577)
+..+++.|+|.++|++||++|+++++|++.. .+.++++|+|++||||+||. |||||++|++++|+++||+||+||+|+
T Consensus 12 ~~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~-~~~~~~~f~i~~pPP~~nG~-lHiGH~~~~~~~Di~~Ry~rm~G~~vl 89 (1052)
T PRK14900 12 RTELAKGYEHREVEARWYPFWQERGYFHGDE-HDRTRPPFSIVLPPPNVTGS-LHLGHALTATLQDVLIRWKRMSGFNTL 89 (1052)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHCCCccCCc-ccCCCCCEEEecCCCCCCCc-chHHHHHhhHHHHHHHHHHHhcCCccc
Confidence 3458899999999999999999999998752 23567889999999999998 999999999999999999999999999
Q ss_pred CcccccccChHHHHHHHH-h----CCCc------------hhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHH
Q 008100 137 HPMGWDAFGLPAEQYAIE-T----GTHP------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQ 199 (577)
Q Consensus 137 ~~~G~D~~Glpie~~a~~-~----g~~~------------~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~ 199 (577)
|++||||||+|+|.++++ + |..+ .++++++++.|++||++||+++||++.|+|+|+.|.++++
T Consensus 90 ~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~ 169 (1052)
T PRK14900 90 WLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVR 169 (1052)
T ss_pred CCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHH
Confidence 999999999999887654 2 2222 2356788899999999999999999999999999999999
Q ss_pred HHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHH
Q 008100 200 WIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKE 279 (577)
Q Consensus 200 ~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~ 279 (577)
++|.+|+++||||++.++|+|||.|+|+||++||++..- ..+
T Consensus 170 ~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e~-~~~------------------------------------- 211 (1052)
T PRK14900 170 EVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEEA-HQG------------------------------------- 211 (1052)
T ss_pred HHHHHHHHCCCEEeccceeccCCCCCCCccHHHhcccCC-CCC-------------------------------------
Confidence 999999999999999999999999999999999975310 101
Q ss_pred HHHHhhhccCCceEEEEeecCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccch
Q 008100 280 MQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDL 359 (577)
Q Consensus 280 ~~~~~i~~~~~~~~~f~l~~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (577)
...+|+|++.+. +.+|+||||||||||||+||||||++++ |.
T Consensus 212 ---------~~~~i~f~l~~~-----~~~l~vaTTrPeTl~~~~avaV~P~~~~---------------y~--------- 253 (1052)
T PRK14900 212 ---------ELWSFAYPLADG-----SGEIVVATTRPETMLGDTAVAVHPLDPR---------------YM--------- 253 (1052)
T ss_pred ---------eEEEEEEEecCC-----CcEEEEEECchhhhhcceeEEECCCcHH---------------HH---------
Confidence 123689998642 3589999999999999999999999862 32
Q ss_pred hhhhhhhcccccccceEEecCCCCCeeeEEee-cccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCCCccc
Q 008100 360 ERTELQKEKTGVFSGCYARNPASGEAIPIWVA-DYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQS 438 (577)
Q Consensus 360 ~~~~~~~~~~~~~~G~~~~~P~~~~~ipIi~~-d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~~~~~ 438 (577)
.|.|.+|.||++++.+|||.+ +||++++|||+||+|||||++||++|++|||+++++|+++|
T Consensus 254 -----------~L~G~~~~~Pl~~~~ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G------ 316 (1052)
T PRK14900 254 -----------ALHGKKVRHPITGRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPDG------ 316 (1052)
T ss_pred -----------HhcCCEEECCCCCCeeEEEecccccCcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCCc------
Confidence 247999999999999999854 48999999999999999999999999999999999998753
Q ss_pred cccccccceEeccCccccccccCCCCHHHHHHHHHHHHHhcCCCcee---------------------------------
Q 008100 439 EKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK--------------------------------- 485 (577)
Q Consensus 439 ~~~~~~~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~~~~--------------------------------- 485 (577)
.+.... ..+.|+.+.+|+.+|++.|.+.|...+.
T Consensus 317 --------~~~~~~-----~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k 383 (1052)
T PRK14900 317 --------RMTAEA-----GPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLA 383 (1052)
T ss_pred --------EEecCC-----cccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehHHHH
Confidence 222211 1366777777777777777766543220
Q ss_pred -----------ee--------------eccCcccccCcCccccccceEEECCCCeeeecCCCCCCCCCCCCCCcCCCCCC
Q 008100 486 -----------VN--------------YKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTG 540 (577)
Q Consensus 486 -----------~~--------------~~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~~l~~~l~~~~~~~~~G~~ 540 (577)
+. .+++|||||||||||||||+|||++ |++++ ..+
T Consensus 384 ~~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~w~~~~-~~~~v-~~~------------------ 443 (1052)
T PRK14900 384 RPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPD-GHVTV-ARE------------------ 443 (1052)
T ss_pred HHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEeecCCCceeCeEEcCC-CcEEe-ccc------------------
Confidence 11 1579999999999999999999976 44442 210
Q ss_pred CCcCccCccccccccCCCCC-CcccccCcccccccCC
Q 008100 541 EPPLSKAVSWVQTTEHSSGK-PARRETSTMPQWAGSC 576 (577)
Q Consensus 541 ~~~l~~~~~~v~~~~~~~g~-~~~R~tDtmD~WfdSs 576 (577)
.+..|++||+ .++|++|||||||||+
T Consensus 444 ----------~~~~~~~~~~~~~~~~~dVlDvWFdS~ 470 (1052)
T PRK14900 444 ----------TPEACSTCGKAELRQDEDVLDTWFSSG 470 (1052)
T ss_pred ----------ccccccccCccceecCCceEEEEEcCC
Confidence 0136788875 4999999999999997
No 19
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.7e-88 Score=780.38 Aligned_cols=390 Identities=34% Similarity=0.578 Sum_probs=329.2
Q ss_pred cccCCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcc
Q 008100 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (577)
Q Consensus 60 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~ 139 (577)
++..||+.++|++||++|+++++|++.. +.++++|+|++||||+||. |||||+++++++|+++||+||+||+|++++
T Consensus 6 ~~~~~~~~~~E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~ppPy~nG~-lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~ 82 (800)
T PRK13208 6 LPKKYDPEELEEKWQKIWEEEGTYKFDP--DERKPVYSIDTPPPTVSGS-LHIGHVFSYTHTDFIARYQRMRGYNVFFPQ 82 (800)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCccccc--ccCCCcEEEecCcCCCCCC-ccHHHHHhHHHHHHHHHHHHcCCCcccCCC
Confidence 5678999999999999999999999763 3357889999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHHH-hCCCch------------hhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHH
Q 008100 140 GWDAFGLPAEQYAIE-TGTHPK------------ITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLL 206 (577)
Q Consensus 140 G~D~~Glpie~~a~~-~g~~~~------------~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~ 206 (577)
||||||+|||.+|++ .|+.++ ++++++++.|+++|++||+++||+++|+|+||.|.++++++|.+|+
T Consensus 83 G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~ 162 (800)
T PRK13208 83 GWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLY 162 (800)
T ss_pred CcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHH
Confidence 999999999999987 587765 4788999999999999999999999999999999999999999999
Q ss_pred HCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHHHHhhh
Q 008100 207 KRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIG 286 (577)
Q Consensus 207 ~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~ 286 (577)
++|+||++.++|+|||.|+|+||++||++. ++.
T Consensus 163 ~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~--~~~--------------------------------------------- 195 (800)
T PRK13208 163 KKGLIYRAEAPVLWCPRCETAIAQAEVEYR--ERE--------------------------------------------- 195 (800)
T ss_pred HCCCeeecCcccccCCCCCCccchhhhccc--ccc---------------------------------------------
Confidence 999999999999999999999999999752 211
Q ss_pred ccCCceEEEEeecCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchhhhhhhh
Q 008100 287 RSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQK 366 (577)
Q Consensus 287 ~~~~~~~~f~l~~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (577)
+..++|+|++.+ +.+++|||||||||+||+||||||++++ |.
T Consensus 196 -~~~~~ikf~~~~------~~~l~v~TtrPeTl~g~~ai~v~p~~~~---------------~~---------------- 237 (800)
T PRK13208 196 -GKLNYIKFPVED------GEEIEIATTRPELLPACVAVVVHPDDER---------------YK---------------- 237 (800)
T ss_pred -ceEEEEEEEecC------CCEEEEEeCCcchhhhCeEEEECCCchH---------------HH----------------
Confidence 123578999863 3589999999999999999999999862 32
Q ss_pred cccccccceEEecCCCCCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCCCccccccccccc
Q 008100 367 EKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEG 446 (577)
Q Consensus 367 ~~~~~~~G~~~~~P~~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~~~~~~~~~~~~g 446 (577)
.+.|+++.||++++.+|||.++||++++|||+||+||+||++||++|++|||+++++|+++|
T Consensus 238 ----~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G-------------- 299 (800)
T PRK13208 238 ----HLVGKTAIVPLFGVEVPILADPLVDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDG-------------- 299 (800)
T ss_pred ----HhcCCEEEcCCCCCcceEECCCccCCCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCCc--------------
Confidence 24789999999999999999999999999999999999999999999999999999997543
Q ss_pred eEeccCccccccccCCCCHHHHHHHHHHHHHhcCCCcee----------------------eee----------------
Q 008100 447 LIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK----------------------VNY---------------- 488 (577)
Q Consensus 447 ~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~~~~----------------------~~~---------------- 488 (577)
.+.... ..+.|+.+++|+.++++.|.+.|...+. -+|
T Consensus 300 ~~~~~~-----g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~~ 374 (800)
T PRK13208 300 RMTEAA-----GKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKEELLERGK 374 (800)
T ss_pred eEecCC-----cccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhhc
Confidence 332211 1478888889999999998887753210 001
Q ss_pred ------------------ccC-cccccCcCccccccceEEECCCCeeeecCCCCCCCCCCCCCCcCCCCCCCCcCccCcc
Q 008100 489 ------------------KLR-DWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVS 549 (577)
Q Consensus 489 ------------------~~~-DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~~l~~~l~~~~~~~~~G~~~~~l~~~~~ 549 (577)
+++ |||||||||||||||+|+|++||++++..++.+|+. | +.....
T Consensus 375 ~~~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~~~l~~~-~--------------~~d~~~ 439 (800)
T PRK13208 375 EINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPVD-P--------------TKDEPP 439 (800)
T ss_pred CcEEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeecCchhhhccC-c--------------hhhccc
Confidence 234 999999999999999999999987654333333322 1 000111
Q ss_pred ccccccCCCC-CCcccccCcccccccCCC
Q 008100 550 WVQTTEHSSG-KPARRETSTMPQWAGSCW 577 (577)
Q Consensus 550 ~v~~~~~~~g-~~~~R~tDtmD~WfdSsW 577 (577)
...|+.|| ..++|++|||||||||||
T Consensus 440 --~~~~~~~g~~~~~~~~dvlD~WfdS~~ 466 (800)
T PRK13208 440 --GYKCPQCGSPGFEGETDVMDTWATSSI 466 (800)
T ss_pred --cccccccCCcCEEecCCEEEEEEeCCc
Confidence 24688888 469999999999999986
No 20
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=1e-87 Score=787.97 Aligned_cols=409 Identities=27% Similarity=0.447 Sum_probs=319.7
Q ss_pred hcccCCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCc
Q 008100 59 VVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHP 138 (577)
Q Consensus 59 ~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~ 138 (577)
.+++.|||.++|++||++|+++++|++. .+.++++|+|++||||+||. ||||||++++++|+++||+||+||+|+|+
T Consensus 95 ~~~~~yd~~~iE~~w~~~W~~~~~f~~~--~~~~~~~f~i~~ppPy~nG~-lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~ 171 (1066)
T PLN02381 95 QMAKQYSPSAVEKSWYAWWEKSGYFGAD--AKSSKPPFVIVLPPPNVTGA-LHIGHALTAAIEDTIIRWKRMSGYNALWV 171 (1066)
T ss_pred hcccCCCHHHHHHHHHHHHHHCCCccCC--ccCCCCcEEEEeCCCCCCCC-ccHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence 3788999999999999999999999875 34567889999999999998 99999999999999999999999999999
Q ss_pred ccccccChHHHHHHHH-----hCCCc------------hhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHH
Q 008100 139 MGWDAFGLPAEQYAIE-----TGTHP------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWI 201 (577)
Q Consensus 139 ~G~D~~Glpie~~a~~-----~g~~~------------~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~ 201 (577)
+||||||+|+|.++++ .|..+ .+++.++++.|++||++||+++||++.|+|+|+.|+++++++
T Consensus 172 ~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~ 251 (1066)
T PLN02381 172 PGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEA 251 (1066)
T ss_pred CCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHH
Confidence 9999999999988764 24433 245778899999999999999999999999999999999999
Q ss_pred HHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHH
Q 008100 202 FLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQ 281 (577)
Q Consensus 202 f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~ 281 (577)
|.+|+++||||++.++|+|||.|+|+||++||++. +..+..+. ++. .|++.+.
T Consensus 252 F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~--d~~~~s~~---------~~~-------------~~~~~~~--- 304 (1066)
T PLN02381 252 FVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYI--DIKERTLL---------KVP-------------GYDKPVE--- 304 (1066)
T ss_pred HHHHHHCCCEEeccccccCCCCCCCCccHHHhhhh--ccccchhh---------ccc-------------CCCccee---
Confidence 99999999999999999999999999999999752 11111110 111 1221110
Q ss_pred HHhhhccCCceEEEEeecCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchhh
Q 008100 282 RNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLER 361 (577)
Q Consensus 282 ~~~i~~~~~~~~~f~l~~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (577)
+| .-.+++|++.+. +.+++|||||||||+|++||+|||+++. |.
T Consensus 305 ---~g--~~~~~~Y~l~~~-----~~~i~vATtRpEti~g~~avaV~P~d~r---------------y~----------- 348 (1066)
T PLN02381 305 ---FG--VLTSFAYPLEGG-----LGEIVVATTRIETMLGDTAIAIHPDDER---------------YK----------- 348 (1066)
T ss_pred ---eE--EEEEEEEEecCC-----CCEEEEecCCHHHHhcccceeeCCCCcc---------------hh-----------
Confidence 00 012467777632 2479999999999999999999999863 32
Q ss_pred hhhhhcccccccceEEecCCCCCeeeEEee-cccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCCCccccc
Q 008100 362 TELQKEKTGVFSGCYARNPASGEAIPIWVA-DYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEK 440 (577)
Q Consensus 362 ~~~~~~~~~~~~G~~~~~P~~~~~ipIi~~-d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~~~~~~~ 440 (577)
.|.|.+|.||++++.+|||.+ +||++++|||+||+|||||++||++|++||||++++|+++| .+++..
T Consensus 349 ---------~L~G~~~~~Pl~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G-~~~~~~- 417 (1066)
T PLN02381 349 ---------HLHGKFAVHPFNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDG-KINSNG- 417 (1066)
T ss_pred ---------hhCCCEEECCCCCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCc-eeCCCC-
Confidence 247899999999999999986 49999999999999999999999999999999999998764 232110
Q ss_pred cccccceEeccCccccccccCCCCHHHHHHHHHHHHHhcCCCc-------------------------------------
Q 008100 441 AYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGK------------------------------------- 483 (577)
Q Consensus 441 ~~~~~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~~------------------------------------- 483 (577)
+..+.|+.+.+|+.+|++.|.+.|...
T Consensus 418 ----------------~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~ 481 (1066)
T PLN02381 418 ----------------GSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQ 481 (1066)
T ss_pred ----------------ccccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHHHHH
Confidence 013677777788888888777766432
Q ss_pred ----------eeeee--------------ccCcccccCcCccccccceEEECCCCeeeecCCCCCCCCCCCCCCcCCCCC
Q 008100 484 ----------KKVNY--------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGT 539 (577)
Q Consensus 484 ----------~~~~~--------------~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~~l~~~l~~~~~~~~~G~ 539 (577)
.+++| |++|||||||||||||||||||+-+.. .+ . . .|+
T Consensus 482 al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~~~~~~-------~~----~---~---~g~ 544 (1066)
T PLN02381 482 ALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDD-------QL----K---E---LGS 544 (1066)
T ss_pred HHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCccceEEeccChh-------hc----c---c---CCc
Confidence 12221 689999999999999999999862211 01 0 0 011
Q ss_pred --CCCcC-ccCccccccccCCC-CC--CcccccCcccccccCCC
Q 008100 540 --GEPPL-SKAVSWVQTTEHSS-GK--PARRETSTMPQWAGSCW 577 (577)
Q Consensus 540 --~~~~l-~~~~~~v~~~~~~~-g~--~~~R~tDtmD~WfdSsW 577 (577)
+.|.. .+..+.++..|+.| |+ .++|++|||||||||||
T Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~ 588 (1066)
T PLN02381 545 YNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGL 588 (1066)
T ss_pred ccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCc
Confidence 12221 12334455444444 33 49999999999999986
No 21
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=3e-87 Score=779.02 Aligned_cols=382 Identities=32% Similarity=0.530 Sum_probs=318.1
Q ss_pred cccCCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcc
Q 008100 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (577)
Q Consensus 60 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~ 139 (577)
+++.|||.++|++||++|+++++|++.. +.++++|+|+++|||+||. ||||||++++++|+++||+||+|++|++++
T Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~--~~~~~~f~i~~ppPy~nG~-lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~ 77 (861)
T TIGR00422 1 MPKDYDPHEVEKKWYKKWEKSGFFKPDG--NSNKPPFCIDIPPPNVTGS-LHIGHALNWSIQDIIARYKRMKGYNVLWLP 77 (861)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccCc--ccCCCeEEEEeCCCCCCCC-CcHHHhHHHHHHHHHHHHHHhcCCcccCCC
Confidence 4678999999999999999999999763 3467889999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHHHh----CCCc------------hhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHH
Q 008100 140 GWDAFGLPAEQYAIET----GTHP------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFL 203 (577)
Q Consensus 140 G~D~~Glpie~~a~~~----g~~~------------~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~ 203 (577)
||||||+|||.++++. |..+ +++++++.+.|++||++||+++||++.|+|||+.|.++|+++|.
T Consensus 78 G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~ 157 (861)
T TIGR00422 78 GTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFV 157 (861)
T ss_pred CcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHH
Confidence 9999999999887652 3333 34678889999999999999999999999999999999999999
Q ss_pred HHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHHHH
Q 008100 204 QLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRN 283 (577)
Q Consensus 204 ~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~~~ 283 (577)
+|+++|+||++.++|+|||.|+|+||++||++. +.
T Consensus 158 ~L~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~--~~------------------------------------------- 192 (861)
T TIGR00422 158 RLYEKGLIYRGEYLVNWDPKLNTAISDIEVEYK--EV------------------------------------------- 192 (861)
T ss_pred HHHHCCCeeecCcccccCCCCCCcchHhHhhcc--cc-------------------------------------------
Confidence 999999999999999999999999999999642 11
Q ss_pred hhhccCCceEEEEeecCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchhhhh
Q 008100 284 WIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTE 363 (577)
Q Consensus 284 ~i~~~~~~~~~f~l~~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (577)
++...+++|++.+.+ +.+|+|||||||||+||+||||||++++ |.
T Consensus 193 ---~~~~~~i~f~~~~~~----~~~l~vaTtrPeTl~~~~av~V~P~~~r---------------y~------------- 237 (861)
T TIGR00422 193 ---KGKLYYIRYPLANGS----KDYLVVATTRPETMFGDTAVAVHPEDER---------------YK------------- 237 (861)
T ss_pred ---cceEEEEEEEecCCC----CCEEEEEeCCcchhhhCeEEEECCCchH---------------HH-------------
Confidence 123357899997532 3699999999999999999999999863 32
Q ss_pred hhhcccccccceEEecCCCCCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCCCcccccccc
Q 008100 364 LQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYT 443 (577)
Q Consensus 364 ~~~~~~~~~~G~~~~~P~~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~~~~~~~~~~ 443 (577)
.|.|+++.+|++++.+|||.++||++++|||+||+|||||++||++|++|||+++++++.+|. +++...
T Consensus 238 -------~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~-~~~~~~--- 306 (861)
T TIGR00422 238 -------HLIGKKVILPLTGRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGL-LNENAG--- 306 (861)
T ss_pred -------HhcCCEEEcCCCCCcceeeecCCCCcccCCCceEecCCCChHHHHHHHHcCCCccceeCCCCe-EcCCCc---
Confidence 257999999999999999999999999999999999999999999999999999999987543 322211
Q ss_pred ccceEeccCccccccccCCCCHHHHHHHHHHHHHhcCCCce---------------------------------------
Q 008100 444 GEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKK--------------------------------------- 484 (577)
Q Consensus 444 ~~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~~~--------------------------------------- 484 (577)
.+.|+.+.+|+.+|++.|.+.|...+
T Consensus 307 ---------------~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~ 371 (861)
T TIGR00422 307 ---------------KYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALE 371 (861)
T ss_pred ---------------ccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHHHHHHHHH
Confidence 35666666777777766666553110
Q ss_pred -----eeee--------------ccCcccccCcCccccccceEEECCCCeeeecCCCCCCCCCCCCCCcCCCCCCCCcCc
Q 008100 485 -----KVNY--------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLS 545 (577)
Q Consensus 485 -----~~~~--------------~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~~l~~~l~~~~~~~~~G~~~~~l~ 545 (577)
++++ +++|||||||||||||||+|+|++||++++..++..+.. +
T Consensus 372 ~~~~~~i~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~w~~~~~~~~~v~~~~~~~~~-~---------------- 434 (861)
T TIGR00422 372 AAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPLPDD-K---------------- 434 (861)
T ss_pred HhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCCcceEEEECCCCcEEeccchHHhhh-h----------------
Confidence 1221 579999999999999999999999987765443221110 0
Q ss_pred cCccccccccCCCC--CCcccccCcccccccCCC
Q 008100 546 KAVSWVQTTEHSSG--KPARRETSTMPQWAGSCW 577 (577)
Q Consensus 546 ~~~~~v~~~~~~~g--~~~~R~tDtmD~WfdSsW 577 (577)
. .|| ..++|++||||||||||+
T Consensus 435 -------~---~~~~~~~~~~~~dVlDtWFdS~l 458 (861)
T TIGR00422 435 -------T---NTGPSVELEQDTDVLDTWFSSSL 458 (861)
T ss_pred -------h---ccCCcccEEECCCcccceeccch
Confidence 0 123 469999999999999974
No 22
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.8e-86 Score=770.57 Aligned_cols=375 Identities=31% Similarity=0.514 Sum_probs=310.7
Q ss_pred hcccCCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCc
Q 008100 59 VVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHP 138 (577)
Q Consensus 59 ~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~ 138 (577)
.+++.|||.++|++||++|+++++|++.. + ++++|+|+++|||+||. ||||||+|++++|+++||+||+||+|+|+
T Consensus 4 ~~~~~y~~~~~E~~~~~~W~~~~~f~~~~--~-~~~~f~i~~ppP~~~G~-lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~ 79 (874)
T PRK05729 4 ELPKTYDPKEVEAKWYQKWEEKGYFKPDD--N-SKKPFSIVIPPPNVTGS-LHMGHALNNTLQDILIRYKRMQGYNTLWL 79 (874)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCcccCc--C-CCCCEEEecCCCCCCCc-chHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 37789999999999999999999999753 2 34569999999999998 99999999999999999999999999999
Q ss_pred ccccccChHHHHHHHH----hCCCchh------------hHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHH
Q 008100 139 MGWDAFGLPAEQYAIE----TGTHPKI------------TTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIF 202 (577)
Q Consensus 139 ~G~D~~Glpie~~a~~----~g~~~~~------------~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f 202 (577)
+||||||+|+|.++++ .|+.+.+ +++++.+.|++||++||+++||++.|+|||+.|.++|+++|
T Consensus 80 ~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F 159 (874)
T PRK05729 80 PGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVF 159 (874)
T ss_pred CCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHH
Confidence 9999999999877654 2554433 46788899999999999999999999999999999999999
Q ss_pred HHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHHH
Q 008100 203 LQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQR 282 (577)
Q Consensus 203 ~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~~ 282 (577)
.+|+++|+||++.++|+|||.|+|+||++||++. +..
T Consensus 160 ~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~--~~~----------------------------------------- 196 (874)
T PRK05729 160 VRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYK--EVK----------------------------------------- 196 (874)
T ss_pred HHHHHCCCEeecCcccccCCCCCCcchhhhcccc--ccc-----------------------------------------
Confidence 9999999999999999999999999999999752 111
Q ss_pred HhhhccCCceEEEEeecCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchhhh
Q 008100 283 NWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERT 362 (577)
Q Consensus 283 ~~i~~~~~~~~~f~l~~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (577)
+...+++|++.+. +.+++|||||||||+||+||||||+++ +|.
T Consensus 197 -----~~~~~i~f~~~~~-----~~~l~vaTtrPeTl~~~~avaV~P~d~---------------ry~------------ 239 (874)
T PRK05729 197 -----GKLWHIRYPLADG-----SDYLVVATTRPETMLGDTAVAVNPEDE---------------RYK------------ 239 (874)
T ss_pred -----ceEEEEEEEecCC-----CcEEEEEeCCcchhhcCeeEeECCCcc---------------HHH------------
Confidence 1235789998753 469999999999999999999999986 342
Q ss_pred hhhhcccccccceEEecCCCCCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCCCccccccc
Q 008100 363 ELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAY 442 (577)
Q Consensus 363 ~~~~~~~~~~~G~~~~~P~~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~~~~~~~~~ 442 (577)
.|.|+++.||++++.+|||.++||++++|||+||++||||++||++|++|||+++++|+++| .+++...
T Consensus 240 --------~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G-~~~~~~~-- 308 (874)
T PRK05729 240 --------HLIGKTVILPLVGREIPIIADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDG-TINENPG-- 308 (874)
T ss_pred --------HhcCCEEECCCCCCeeeEecCccCCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCCC-eEcCCCc--
Confidence 24789999999999999999999999999999999999999999999999999999998763 2322211
Q ss_pred cccceEeccCccccccccCCCCHHHHHHHHHHHHHhcCCCce--------------------------------------
Q 008100 443 TGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKK-------------------------------------- 484 (577)
Q Consensus 443 ~~~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~~~-------------------------------------- 484 (577)
.+.||.+.+|+.+|++.|.+.|...+
T Consensus 309 ----------------~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~ 372 (874)
T PRK05729 309 ----------------EYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPAL 372 (874)
T ss_pred ----------------ccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHHHHHHHH
Confidence 35666666666666666666554210
Q ss_pred ------eee--------------eccCcccccCcCccccccceEEECCCCeeeecCCCCCCCCCCCCCCcCCCCCCCCcC
Q 008100 485 ------KVN--------------YKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPL 544 (577)
Q Consensus 485 ------~~~--------------~~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~~l~~~l~~~~~~~~~G~~~~~l 544 (577)
++. .+++||||||||+||||||+|||.+ |+++ +..++ +
T Consensus 373 ~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~-~~~~-v~~~~-------------------~- 430 (874)
T PRK05729 373 EAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWYDED-GEVY-VGREE-------------------P- 430 (874)
T ss_pred HHHhcCCcEEEChHHHHHHHHHHhcCccceeeeecccCCcccEEEeCC-CcEE-eCCcc-------------------c-
Confidence 111 1579999999999999999999986 5433 33211 0
Q ss_pred ccCccccccccCCCCCCcccccCcccccccCC
Q 008100 545 SKAVSWVQTTEHSSGKPARRETSTMPQWAGSC 576 (577)
Q Consensus 545 ~~~~~~v~~~~~~~g~~~~R~tDtmD~WfdSs 576 (577)
..|.. ..++|++|||||||||+
T Consensus 431 --------~~~~~--~~~~~~~DvlDtWfsS~ 452 (874)
T PRK05729 431 --------EAREK--ALLTQDEDVLDTWFSSA 452 (874)
T ss_pred --------ccccc--cCeEeCCceecceecCC
Confidence 01111 25999999999999996
No 23
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-83 Score=683.88 Aligned_cols=453 Identities=22% Similarity=0.309 Sum_probs=334.0
Q ss_pred CCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCccccc
Q 008100 63 AYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWD 142 (577)
Q Consensus 63 ~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D 142 (577)
.+|-...+.+..+.|+...++....+ +.+++.|.++| +||. ||||||+|+|++||+.||+.++|++|+|++|||
T Consensus 29 ~~Ns~gr~~q~~evi~~~~~~~~qls-~~q~~~f~L~d----anG~-lhlghalnkILkdIinr~~laqg~~alyvpGwD 102 (937)
T KOG0433|consen 29 HFNSTGRIGQVIEVIQPPEILSSQLS-DQQRVEFELKD----ANGN-LHLGHALNKILKDIINRILLAQGKSALYVPGWD 102 (937)
T ss_pred ccccccchHHHHHHhCChHHHHHHHh-hccCceEEEec----cCCC-ccchHHHHHHHHHHHHHHHHhcCceeccCCCCC
Confidence 34455567778888888888875543 45678899998 9998 999999999999999999999999999999999
Q ss_pred ccChHHH-HHHHHh------CCCc-------hhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHC
Q 008100 143 AFGLPAE-QYAIET------GTHP-------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKR 208 (577)
Q Consensus 143 ~~Glpie-~~a~~~------g~~~-------~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~k 208 (577)
|||+|+| .+|.+. .+.+ +.++...+++|++.|+|+||+.||.++|.|+||+|+..+.++|.+|++|
T Consensus 103 chGLPiEs~kalssl~~~~~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyek 182 (937)
T KOG0433|consen 103 CHGLPIESTKALSSLTESEGSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEK 182 (937)
T ss_pred cCCCchHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhc
Confidence 9999999 465432 1122 2456677899999999999999999999999999999999999999999
Q ss_pred CceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHHHHhhhcc
Q 008100 209 GLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRS 288 (577)
Q Consensus 209 Gliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~~ 288 (577)
|||||+.+||+|+|+.+|+||++|+|+.....+
T Consensus 183 gLvyR~~KPVyWSpSSRTALAEaELEYn~nH~S----------------------------------------------- 215 (937)
T KOG0433|consen 183 GLVYRSFKPVYWSPSSRTALAESELEYNDNHQS----------------------------------------------- 215 (937)
T ss_pred cceeccCCcceecCcchhhhhhhhccCCcCCcc-----------------------------------------------
Confidence 999999999999999999999999998654433
Q ss_pred CCceEEEEeecCC-------CCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccc--------hhhHHHHHHHH
Q 008100 289 EGAEMDFRVLDSD-------GQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQ--------SQNIEEYKNLA 353 (577)
Q Consensus 289 ~~~~~~f~l~~~~-------~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~--------~~~~~~~~~~~ 353 (577)
.++|++|+|.+.. ....+.|++||||||||||+|.|||+||+..|..+.+.... ...+.++...
T Consensus 216 ~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe~~- 294 (937)
T KOG0433|consen 216 TSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEKS- 294 (937)
T ss_pred eeEEEEEeccCCccccccCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcceEEEEccchhhhhhhh-
Confidence 4566777765432 12235899999999999999999999999998654443111 1112222111
Q ss_pred hcccchhhhhhhhcccccccceEEecCCC-CCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCC
Q 008100 354 SRKSDLERTELQKEKTGVFSGCYARNPAS-GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDD 432 (577)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~G~~~~~P~~-~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~ 432 (577)
.+......+...+..+.|.+|.||+. +...|++.++||+++.|||+||+|||||++||.+|.++||++.++||+.|
T Consensus 295 ---~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~G 371 (937)
T KOG0433|consen 295 ---SDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSRG 371 (937)
T ss_pred ---cCcceeeeeecchhhccCceecCcCccccCCccccccceecCcccceeecCCCCChHHHHHHhhcCCCcccccCCCC
Confidence 11110111123444788999999975 45689999999999999999999999999999999999999999999875
Q ss_pred CCCccccc-cccccceE---------------eccCc--------------------cccccccCCCCHH-HHHHHHHHH
Q 008100 433 ESSSQSEK-AYTGEGLI---------------VNSSN--------------------LISGLDINGLSCQ-EATSKVIEW 475 (577)
Q Consensus 433 ~~~~~~~~-~~~~~g~~---------------v~~~~--------------------~~~~~~~~g~~~~-~a~~~ii~~ 475 (577)
. ++.++. .+.|+.++ +.++. ..|+.++++.... ..+.+-|++
T Consensus 372 ~-yT~ea~~~l~Gk~VL~eG~k~vl~~l~~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al~~Vk~ 450 (937)
T KOG0433|consen 372 C-YTREAGHDLDGKEVLGEGQKIVLRLLNHDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMALDDVKV 450 (937)
T ss_pred c-eecccccccccchhhccccHhHHHHHhhhhhhhhcccccCCcccccCCceEEecchhheeeHHhhhhHHHHHHhhcee
Confidence 4 444433 33332211 11111 1134444432211 112233445
Q ss_pred HHhcCCCcee-eeeccCcccccCcCccccccceEEECCCCeeeecCCCCCCCCCCCCCCcCCCCCCCCcCccCccccccc
Q 008100 476 AEKTGNGKKK-VNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTT 554 (577)
Q Consensus 476 l~~~g~~~~~-~~~~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~~l~~~l~~~~~~~~~G~~~~~l~~~~~~v~~~ 554 (577)
.|..+..+.. +.-.+++|||||||.||+|||++|++++|+++ ++++.+.|....+ +.+|+|.||..+.++|++..
T Consensus 451 ~P~~~~~rl~~~~~~R~~WCISRQR~WGvPIP~ly~k~~~~~l-~ns~~~~h~~~~~---eqeGsD~Ww~~~~eellpe~ 526 (937)
T KOG0433|consen 451 APGDSDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYL-SNSLIEWHAKLTR---EQEGSDVWWEIDVEELLPEE 526 (937)
T ss_pred CCcchHHHHHHHHcCCCcceeeeccccCCcceeEEecCCCcee-ehHHHHHHHHHHH---HHhCCcceEeCChhHhCcHh
Confidence 5443333221 22346899999999999999999999988765 5544444443333 35699999988888888754
Q ss_pred cC----CCCCCcccccCcccccccC--CC
Q 008100 555 EH----SSGKPARRETSTMPQWAGS--CW 577 (577)
Q Consensus 555 ~~----~~g~~~~R~tDtmD~WfdS--sW 577 (577)
.- .-...|.|+|||||||||| ||
T Consensus 527 ~~~e~~~~a~ey~kgtDimDVWFDSGssW 555 (937)
T KOG0433|consen 527 EVREIPDIASEYKKGTDIMDVWFDSGSSW 555 (937)
T ss_pred hhcccchhHHHhccCCceeeeEecCCCcc
Confidence 32 4456899999999999976 66
No 24
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-79 Score=644.58 Aligned_cols=456 Identities=23% Similarity=0.378 Sum_probs=345.0
Q ss_pred cccCCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcc
Q 008100 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (577)
Q Consensus 60 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~ 139 (577)
.+.++||++-|+++.++|++.+.|+...+..+++|+|.++||||+++|. +|.||++.-+|+|++.||..|+||.|...+
T Consensus 4 ~~~n~nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGl-PHyGHiLa~TIKDiVtRya~~~G~hVeRRF 82 (1070)
T KOG0434|consen 4 VPENFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGL-PHYGHILASTIKDIVTRYATQTGHHVERRF 82 (1070)
T ss_pred ccccCCCchhHHHHHHHHHHhhHHHHHHHhhCCCCceeeccCCccccCC-CccchhhhhhHHHHHHHHhhccccceeeec
Confidence 4678999999999999999999999888888899999999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHH-HhCCCc----------------hhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHH
Q 008100 140 GWDAFGLPAEQYAI-ETGTHP----------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIF 202 (577)
Q Consensus 140 G~D~~Glpie~~a~-~~g~~~----------------~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f 202 (577)
||||||+|+|.... ++|+.. +..+.++..+++....|||-|+|+++.|.||+|.+++.|||+|
T Consensus 83 GWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvF 162 (1070)
T KOG0434|consen 83 GWDTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVF 162 (1070)
T ss_pred ccccCCCccceeechhcCCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHH
Confidence 99999999986543 345543 3456678889999999999999999999999999999999999
Q ss_pred HHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHHH
Q 008100 203 LQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQR 282 (577)
Q Consensus 203 ~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~~ 282 (577)
++|++||++|||.+.++||..|.|+||+.|-.+++..+.
T Consensus 163 keL~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV~----------------------------------------- 201 (1070)
T KOG0434|consen 163 KELHEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDVP----------------------------------------- 201 (1070)
T ss_pred HHHHhcCceecceeeeccccccCCcccchhcccCcccCC-----------------------------------------
Confidence 999999999999999999999999999999987665433
Q ss_pred HhhhccCCceEEEEeecCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhh--H-HHHHHHHhcccch
Q 008100 283 NWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQN--I-EEYKNLASRKSDL 359 (577)
Q Consensus 283 ~~i~~~~~~~~~f~l~~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~--~-~~~~~~~~~~~~~ 359 (577)
++++.|.|++.+++ +..+++|||||||||+|.|+||||+..|++...+...... . .++-.+.+..+.-
T Consensus 202 -----DPav~v~F~li~~~----~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl~~l~k~~~~~ 272 (1070)
T KOG0434|consen 202 -----DPAVFVAFPLIGDP----NVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRLGELYKNPKND 272 (1070)
T ss_pred -----CCeEEEEeeccCCc----ceeEEEEecCCccCccceeEEEcCCeEEEEEEeccCCeEEEEeHHHHHHHhcCcccc
Confidence 25678999998764 5899999999999999999999999999865544322211 1 1222222211111
Q ss_pred hhhhhhhcccccccceEEecCC-------CCCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCe-----eEEe
Q 008100 360 ERTELQKEKTGVFSGCYARNPA-------SGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDIS-----IHSV 427 (577)
Q Consensus 360 ~~~~~~~~~~~~~~G~~~~~P~-------~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~-----i~~~ 427 (577)
....+++..+..|.|++|..+| ....+.|+.++||+.+.|||+||+|||+|++||.+|..+|+- +.|+
T Consensus 273 ~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cp 352 (1070)
T KOG0434|consen 273 NYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCP 352 (1070)
T ss_pred cHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCceeeecCCccChhhHHHHHHcCcccCCCCCCCc
Confidence 2233556667789999887655 245799999999999999999999999999999999999863 4578
Q ss_pred ecCCCCCCccccccccc----------------cceEeccC--------cccccccc------------CCCCHH-HHHH
Q 008100 428 VMPDDESSSQSEKAYTG----------------EGLIVNSS--------NLISGLDI------------NGLSCQ-EATS 470 (577)
Q Consensus 428 v~~~~~~~~~~~~~~~~----------------~g~~v~~~--------~~~~~~~~------------~g~~~~-~a~~ 470 (577)
||++| .++.+...|.| .|.++..+ |++++..+ +.+..+ ..++
T Consensus 353 VDe~G-~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn 431 (1070)
T KOG0434|consen 353 VDESG-LFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNN 431 (1070)
T ss_pred cccCC-ccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHHHhhccHhhhhHHHHHHHHHhcc
Confidence 87754 45555555553 23333222 22222111 100000 0122
Q ss_pred HHHHHHHhcCCCceeeee--ccCcccccCcCccccccceEEECCCCeeeecCCCCCCCCCCCCCCcCCCCCCCCcCcc-C
Q 008100 471 KVIEWAEKTGNGKKKVNY--KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSK-A 547 (577)
Q Consensus 471 ~ii~~l~~~g~~~~~~~~--~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~~l~~~l~~~~~~~~~G~~~~~l~~-~ 547 (577)
..+.|+|...+.++..|| |.|||.|||+||||||||+|+.++..|+|+++. +.+++++ +|.....+++ .
T Consensus 432 ~~t~WVP~~ikeKRF~NWL~nARDW~iSRnR~WGTPIpLWVSdD~eevVcigS------i~eLEeL--SG~kItDlHRe~ 503 (1070)
T KOG0434|consen 432 MKTHWVPQNIKEKRFANWLKNARDWNISRNRYWGTPIPLWVSDDYEEVVCIGS------IKELEEL--SGVKITDLHRES 503 (1070)
T ss_pred cccccCChhhhHHHHHHHHhhhhhcccccccccCCCcceEEccCCceEEEecc------HHHHHHh--cCCcchhhhhhh
Confidence 223344443333333344 789999999999999999999999888999873 2333433 3544333332 3
Q ss_pred ccccccccCCCC-CCcccccCcccccccCC
Q 008100 548 VSWVQTTEHSSG-KPARRETSTMPQWAGSC 576 (577)
Q Consensus 548 ~~~v~~~~~~~g-~~~~R~tDtmD~WfdSs 576 (577)
.|-+..+. +|| +.++|..+||||||+|+
T Consensus 504 iD~itIps-~~gkg~l~Rv~eVfDCWFESG 532 (1070)
T KOG0434|consen 504 IDHITIPS-KKGKGVLHRVSEVFDCWFESG 532 (1070)
T ss_pred cCceeccc-CCCCcceehhhhHhhhhhccC
Confidence 44444332 455 57999999999999885
No 25
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=5.2e-78 Score=708.04 Aligned_cols=365 Identities=22% Similarity=0.351 Sum_probs=273.2
Q ss_pred cccCCCchhhhHHHHHHHHHCCCccCCCCCC--CCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccC
Q 008100 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEID--TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLH 137 (577)
Q Consensus 60 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~--~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~ 137 (577)
...++++.++|++||++|+++++|++..+.+ .++++|+++++|||+||. |||||++|++++|+++||+||+||+|+|
T Consensus 9 ~~~r~~l~~iE~k~q~~W~~~~~fe~~~~~~~~~~~~kf~i~~ppPY~NG~-lHiGHa~t~t~~D~i~Rykrm~G~~vlf 87 (1084)
T PLN02959 9 TARRDRLLEIEVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGL-LHLGHAFSLSKLEFAAAYHRLRGANVLL 87 (1084)
T ss_pred CchhcCHHHHHHHHHHHHHhcCCcccCcccccCCCCCcEEEeCCCCCCCCC-cchhhHHHHHHHHHHHHHHHcCCCccCC
Confidence 4567899999999999999999999874322 245889999999999998 9999999999999999999999999999
Q ss_pred cccccccChHHHHHHHHh-------CCCc----------------------------------hhh--------------
Q 008100 138 PMGWDAFGLPAEQYAIET-------GTHP----------------------------------KIT-------------- 162 (577)
Q Consensus 138 ~~G~D~~Glpie~~a~~~-------g~~~----------------------------------~~~-------------- 162 (577)
++||||||+||+..|++. |..+ +..
T Consensus 88 p~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~ 167 (1084)
T PLN02959 88 PFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIM 167 (1084)
T ss_pred CCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 999999999999987542 3211 000
Q ss_pred -------------------HHHHHHHHHHHHHHhCCCCCCCCceeCCC--hhhHHHHHHHHHHHHHCCceeeeccCcccC
Q 008100 163 -------------------TLRNINRFRTQLKSLGFSYDWNREISTIE--PAYYKWTQWIFLQLLKRGLAYQAEVPVNWC 221 (577)
Q Consensus 163 -------------------~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d--~~~~~~v~~~f~~L~~kGliy~~~~~v~wc 221 (577)
++.+-..++++|++||+++||+|.|.|+| |.|.++++|+|.+|+++|+||++.++|+||
T Consensus 168 ~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wc 247 (1084)
T PLN02959 168 RSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYS 247 (1084)
T ss_pred hhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeC
Confidence 11111556899999999999999999999 999999999999999999999999999999
Q ss_pred CCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHHHHhhhccCCceEEEEeecC-
Q 008100 222 PALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDS- 300 (577)
Q Consensus 222 ~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~~~~~~~~f~l~~~- 300 (577)
|.|+|+||++|++++... +...++ .|+|++.+.
T Consensus 248 p~~~t~ladhe~~~~e~~-~~~~y~---------------------------------------------~ikf~v~~~~ 281 (1084)
T PLN02959 248 PLDGQPCADHDRASGEGV-GPQEYV---------------------------------------------LIKMEVLPPF 281 (1084)
T ss_pred CCCCCCchhhHHhcCCCC-CcceeE---------------------------------------------EEEEeecCcc
Confidence 999999999999876321 111111 122332210
Q ss_pred ----C-CCCccceEEEecCCCCccccCcEEEEcCCCccchhhcccc-chhhHHH------HHHHHhcccchhhhhhhhcc
Q 008100 301 ----D-GQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTT-QSQNIEE------YKNLASRKSDLERTELQKEK 368 (577)
Q Consensus 301 ----~-~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 368 (577)
. -...+.+++||||||||||||+|++|||+++|+.+.+... .....++ |........+ ...+...+
T Consensus 282 ~~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~~~e~~i~s~~~~~~~~~q~~~~~~~~--~~~l~~~~ 359 (1084)
T PLN02959 282 PGKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEINDTEVFILTARAALNLAYQNFSKVPGK--PTCLVELT 359 (1084)
T ss_pred hhhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEecCCeEEEEehhhhhhhHHhhhcccCCC--cEEEEEEE
Confidence 0 0012468999999999999999999999999986655321 1111111 2111000001 11122344
Q ss_pred cccccceEEecCCCCCe-eeEEeecccccCCCCCceeccCCCChhhHHH----------HHHcCC--------eeEEeec
Q 008100 369 TGVFSGCYARNPASGEA-IPIWVADYVLGSYGTGAIMAVPAHDTRDHEF----------ALKFDI--------SIHSVVM 429 (577)
Q Consensus 369 ~~~~~G~~~~~P~~~~~-ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~----------~~k~~L--------~i~~~v~ 429 (577)
+..|.|+.+.||+++++ +||++++||++++|||+||+|||||++||.+ +++||| +++++|+
T Consensus 360 G~~L~G~~~~~Pl~~~~~i~ilp~~~V~~~~GTGvV~~vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid 439 (1084)
T PLN02959 360 GYDLIGLPLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIIN 439 (1084)
T ss_pred HHHhCCCEEECCCCCCcceeEeceEEEeCCCCeeeEEeCCCCCHHHHHHHHhhccchhHHHHcCCCcccccccCCcCccc
Confidence 55899999999999877 9999999999999999999999999999998 578898 4467776
Q ss_pred CCCCCCcccc-----------------------cccc---ccceEeccCccccccccCCCCHHHHHHHHHHHHHhcCC
Q 008100 430 PDDESSSQSE-----------------------KAYT---GEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGN 481 (577)
Q Consensus 430 ~~~~~~~~~~-----------------------~~~~---~~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~ 481 (577)
..| .+...+ ..|. .+|+|. . ..+.|+.+.+|+.+|++.|.+.|.
T Consensus 440 ~~g-~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m~-~------g~~~G~~v~eAr~~Ii~~L~~~G~ 509 (1084)
T PLN02959 440 IPE-FGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTML-V------GEYAGRKVQEAKPLIKKKLIEAGQ 509 (1084)
T ss_pred cCC-CCcchhHHHHHhhcccccchhhHHHHHhhhhhhhcccccccc-C------cCcCCcCHHHHHHHHHHHHHhCCC
Confidence 543 211000 0011 024332 1 258899999999999999998884
No 26
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=1.4e-75 Score=682.47 Aligned_cols=353 Identities=28% Similarity=0.478 Sum_probs=277.4
Q ss_pred hhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChH
Q 008100 68 EIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLP 147 (577)
Q Consensus 68 ~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glp 147 (577)
++|++||++|+++++|++.. .++++|+|+++|||+||. |||||+++++++|+++||+||+|++|+|++||||||+|
T Consensus 2 ~iE~k~~~~W~~~~~fe~~~---~~~~kf~i~~ppPy~nG~-lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~p 77 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEADP---DDREKFFLTMAYPYLNGV-MHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTP 77 (938)
T ss_pred hHHHHHHHHHHhCCCcccCC---CCCCceEEecCCCCCCCC-cccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCc
Confidence 58999999999999999752 257889999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhC------------------------CCchhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHH
Q 008100 148 AEQYAIETG------------------------THPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFL 203 (577)
Q Consensus 148 ie~~a~~~g------------------------~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~ 203 (577)
|+..|++.. .++..+++++...++++|++||+++||++.|.|+||.|.++++|+|.
T Consensus 78 i~~~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~ 157 (938)
T TIGR00395 78 ILGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMN 157 (938)
T ss_pred hHHHHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHH
Confidence 988776521 11245567788899999999999999999999999999999999999
Q ss_pred HHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHHHH
Q 008100 204 QLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRN 283 (577)
Q Consensus 204 ~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~~~ 283 (577)
+|+++|+||++.++|+|||.|+|+||++|++++....
T Consensus 158 ~L~e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~~~------------------------------------------- 194 (938)
T TIGR00395 158 KLKELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGVT------------------------------------------- 194 (938)
T ss_pred HHHHCCCEecCCeeEeecCCCCCCCchhHhccCCccc-------------------------------------------
Confidence 9999999999999999999999999999998652110
Q ss_pred hhhccCCceEEEEeecCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHH-HHHHHhcccchhhh
Q 008100 284 WIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEE-YKNLASRKSDLERT 362 (577)
Q Consensus 284 ~i~~~~~~~~~f~l~~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 362 (577)
.....+|+|++.+. +.+++|||||||||+|++||+|||+++|+...+..+.....++ +..+....... .
T Consensus 195 ---~~~~~~ikf~~~~~-----~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~~~~e~~i~s~~~~~~~~~q~~~~--~ 264 (938)
T TIGR00395 195 ---IVEYILIKFELEDG-----AFYFVAATLRPETVYGVTNCWVNPTITYVIAEVGGEKWITSKEAFENLSYQKLKY--K 264 (938)
T ss_pred ---cceEEEEEEEcCCC-----ceEEEEeeCCcchhhcceeEEECCCCcEEEEEeCCcEEEEeHHHHHhhhhcccce--e
Confidence 01235789988542 3589999999999999999999999999866554321111111 11111111111 1
Q ss_pred hhhhcccccccceEEecCCCCCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHc--------------CCeeEEee
Q 008100 363 ELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKF--------------DISIHSVV 428 (577)
Q Consensus 363 ~~~~~~~~~~~G~~~~~P~~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~--------------~L~i~~~v 428 (577)
.+...+++.|.|+++.||++++.+||++++||++++|||+||+|||||++||.+++++ ++++++++
T Consensus 265 ~~~~~~g~~l~G~~~~~P~~~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~~~~~~gi~~~~~~~~~i~ii 344 (938)
T TIGR00395 265 PIEEVPGKQFIGKKVHNPVVGPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYLGIKPVVIDIEPVPLI 344 (938)
T ss_pred EEEEEchHhccCCEEECCCCCCeeEEeecceeecCCCcceEEeCCCCCHHHHHHHHHhhhcchhcCCcchhcccCCccce
Confidence 1223345689999999999999999999999999999999999999999999998863 35556655
Q ss_pred cCCC-CCCcc---------------------ccccccc---cceEeccCccccccccCCCCHHHHHHHHHHHHHhcCCC
Q 008100 429 MPDD-ESSSQ---------------------SEKAYTG---EGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNG 482 (577)
Q Consensus 429 ~~~~-~~~~~---------------------~~~~~~~---~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~ 482 (577)
+.++ +.+.. ....|.+ .|+|.... ..+.|+.+.+|+.+|++.|.+.|.+
T Consensus 345 ~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~-----~~~~G~~v~ear~~i~~~L~~~g~~ 418 (938)
T TIGR00395 345 HTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNI-----PPYKGMKVSEAKEKVKADLIDAGLA 418 (938)
T ss_pred ecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCC-----cccCCcCHHHhHHHHHHHHHHCCCc
Confidence 4332 11110 0011222 46664332 1589999999999999999988764
No 27
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-75 Score=634.83 Aligned_cols=361 Identities=31% Similarity=0.508 Sum_probs=285.6
Q ss_pred hhcccCCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccC
Q 008100 58 QVVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLH 137 (577)
Q Consensus 58 ~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~ 137 (577)
.-+...|+|..+|..|+.+|++.+.|++.-. ....+.|.++-+||..+|. ||||||++.++.|+++||+||+||+|+|
T Consensus 40 ~~~~~~y~p~~vE~~wy~ww~k~g~fkp~~~-~~~~~~f~i~~PPPNVTG~-LHiGHALt~aiqD~i~R~~rm~G~~vlw 117 (995)
T KOG0432|consen 40 GPLPAAYSPAYVESAWYKWWEKQGFFKPEYG-PNPGGVFVIPLPPPNVTGS-LHIGHALTVAIQDALARYNRMHGYQVLW 117 (995)
T ss_pred CcccccCCccchHHHHHHHHHHcCCCCcccC-CCCCCcceeecCCCCcccc-cchhHHHHHHHHHHHHHHHHhcCCeeee
Confidence 3478899999999999999999999987633 2345678888666666666 9999999999999999999999999999
Q ss_pred cccccccChHHHHHHHH----hC-CCc------------hhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHH
Q 008100 138 PMGWDAFGLPAEQYAIE----TG-THP------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQW 200 (577)
Q Consensus 138 ~~G~D~~Glpie~~a~~----~g-~~~------------~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~ 200 (577)
+||+||+|+.++.-+++ .+ ... .++-+++..+|.+|+++||.++||++.++|||+...++|.+
T Consensus 118 ~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~e 197 (995)
T KOG0432|consen 118 VPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTE 197 (995)
T ss_pred cCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHH
Confidence 99999999988655543 12 221 12345566779999999999999999999999999999999
Q ss_pred HHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHH
Q 008100 201 IFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEM 280 (577)
Q Consensus 201 ~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~ 280 (577)
+|.+|+++|+|||+.+.||||+..+|++|+.||++. +..+... +.++.|..+.+-.
T Consensus 198 AFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~~--ei~~~t~---------l~vpGyd~~VeFG------------- 253 (995)
T KOG0432|consen 198 AFVRLHEEGLIYRANRLVNWCPALRSAISDIEVESV--EIPGRTL---------LSVPGYDTKVEFG------------- 253 (995)
T ss_pred HHHHHHhcCceEecCceeeechhHHhhhhhheecce--ecCCCce---------EecCCCCcceeee-------------
Confidence 999999999999999999999999999999999852 2222221 2222333222111
Q ss_pred HHHhhhccCCceEEEEeecCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchh
Q 008100 281 QRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLE 360 (577)
Q Consensus 281 ~~~~i~~~~~~~~~f~l~~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (577)
.-..+.|++.++ +..|+|+||||+||+|++||||||+|+. |+
T Consensus 254 --------~L~~faY~v~gs-----~~~i~VaTTRpET~lGDvAvAVhP~D~R---------------Yk---------- 295 (995)
T KOG0432|consen 254 --------VLYSFAYPVEGS-----DEEIVVATTRPETILGDVAVAVHPDDDR---------------YK---------- 295 (995)
T ss_pred --------eeeEEEEeccCC-----CCeEEEecCCccccccceeEEeCCCCcc---------------cc----------
Confidence 112467777754 3489999999999999999999999974 32
Q ss_pred hhhhhhcccccccceEEecCCCCCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCCCccccc
Q 008100 361 RTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEK 440 (577)
Q Consensus 361 ~~~~~~~~~~~~~G~~~~~P~~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~~~~~~~ 440 (577)
.+.|.++.|||+++.+|||.+.+|++++|||+|+|+||||++||++|+||||+.+++++++|. .+....
T Consensus 296 ----------~lhGk~~~hP~~~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~-l~~~~g 364 (995)
T KOG0432|consen 296 ----------HLHGKFVKHPFTGRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDGL-LNNVCG 364 (995)
T ss_pred ----------cccCceeecCCCCCccceeecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCCCc-eeccch
Confidence 135788999999999999999999999999999999999999999999999999999987642 222111
Q ss_pred cccccceEeccCccccccccCCCCHHHHHHHHHHHHHhcCC---------------------------------------
Q 008100 441 AYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGN--------------------------------------- 481 (577)
Q Consensus 441 ~~~~~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~--------------------------------------- 481 (577)
.+.||...+|+.+|++.|.+.|.
T Consensus 365 ------------------ef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~ 426 (995)
T KOG0432|consen 365 ------------------EFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKK 426 (995)
T ss_pred ------------------hccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchheeehHHHHHH
Confidence 45556666666666665555543
Q ss_pred -------Cceeee------------eccCcccccCcCccccccceEEEC
Q 008100 482 -------GKKKVN------------YKLRDWLFARQRYWGEPIPVVFLD 511 (577)
Q Consensus 482 -------~~~~~~------------~~~~DWcISRQR~WG~PIPv~~~~ 511 (577)
|+.++. .|++|||||||.||||+||+|+..
T Consensus 427 A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~ 475 (995)
T KOG0432|consen 427 ALKAVESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVN 475 (995)
T ss_pred HHHHHhcCCeEECchHHHHHHHHHHhhccccchhhhhhhccccceeeee
Confidence 121111 268999999999999999999874
No 28
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.4e-69 Score=625.57 Aligned_cols=314 Identities=30% Similarity=0.507 Sum_probs=244.3
Q ss_pred CCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHh---------------CC---------CchhhHHH
Q 008100 110 LHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIET---------------GT---------HPKITTLR 165 (577)
Q Consensus 110 LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~---------------g~---------~~~~~~~~ 165 (577)
|||||+++++++|+++||+||+||+|++++||||||+|||..|++. |+ .+++++.+
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 7999999999999999999999999999999999999999887542 32 23456777
Q ss_pred HHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCe
Q 008100 166 NINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPV 245 (577)
Q Consensus 166 ~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~ 245 (577)
+.+.++++|++||+++||++.|.|+||.|+++++|+|.+|+++|+||++.++|+|||.|+|+||++|++++... +
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~-~---- 155 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEP-E---- 155 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCC-C----
Confidence 88999999999999999999999999999999999999999999999999999999999999999999864211 0
Q ss_pred EEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHHHHhhhccCCceEEEEeecCCCCCccceEEEecCCCCccccCcEE
Q 008100 246 IRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYL 325 (577)
Q Consensus 246 ~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~~~~~~~~f~l~~~~~~~~~~~l~iwTT~P~Tl~an~av 325 (577)
.+...+|+|+ .+ .+.+++||||||||||||+||
T Consensus 156 -----------------------------------------~~~~~~ikf~-~~-----~~~~l~~~TtrPeTl~g~tai 188 (897)
T PRK12300 156 -----------------------------------------IVEYTLIKFE-ES-----EDLILPAATLRPETIFGVTNL 188 (897)
T ss_pred -----------------------------------------cceEEEEEEe-CC-----CceEEEEEECCcchhccceEE
Confidence 0122467887 21 247899999999999999999
Q ss_pred EEcCCCccchhhccccchhhHHHHHH-HHhcccchhhhhhhhcccccccceEEecCCCCCeeeEEeecccccCCCCCcee
Q 008100 326 VVAPEHPLLSSLVSTTQSQNIEEYKN-LASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIM 404 (577)
Q Consensus 326 ~V~p~~~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~ipIi~~d~V~~~~GTGiVh 404 (577)
||||+++|+.+.+..+.....++... +.....+.+ .+...++..|.|.++.||++++.+||++++||++++|||+||
T Consensus 189 ~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~~~--~~~~~~G~~l~G~~~~~Pl~~~~ipil~~~~V~~~~GTGvV~ 266 (897)
T PRK12300 189 WVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRDVE--IIEEIKGSELIGKKVKNPVTGKEVPILPADFVDPDNGTGVVM 266 (897)
T ss_pred EECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCCce--EEEEeehHHhcCCEEECCCCCCeEEEeccCeeecCCCeeeEE
Confidence 99999999865443221111121111 111111111 122233446999999999999999999999999999999999
Q ss_pred ccCCCChhhHHHHHHcC--------CeeEEeecCCC-CCCc--------------c----c--ccccc---ccceEeccC
Q 008100 405 AVPAHDTRDHEFALKFD--------ISIHSVVMPDD-ESSS--------------Q----S--EKAYT---GEGLIVNSS 452 (577)
Q Consensus 405 ~aPaHg~~Dy~~~~k~~--------L~i~~~v~~~~-~~~~--------------~----~--~~~~~---~~g~~v~~~ 452 (577)
+|||||++||+++++++ |+++.+++.++ |.+. + . ...|. ..|++..+.
T Consensus 267 ~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~ 346 (897)
T PRK12300 267 SVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHKGVLKENT 346 (897)
T ss_pred eCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHHhCCCCccchhHHHHHHHhhhccccceEEeecc
Confidence 99999999999999998 77655554321 1000 0 0 01222 368887653
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHhcCCC
Q 008100 453 NLISGLDINGLSCQEATSKVIEWAEKTGNG 482 (577)
Q Consensus 453 ~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~ 482 (577)
. .+.|+.+++|+.+|++.|.+.|.+
T Consensus 347 g-----~~~G~~v~eA~~~I~~~L~~~g~~ 371 (897)
T PRK12300 347 G-----EYAGKPVREAREKITKDLIEKGIA 371 (897)
T ss_pred c-----CcCCeEHHHHHHHHHHHHHHCCCe
Confidence 2 589999999999999999988753
No 29
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=5.6e-55 Score=465.27 Aligned_cols=169 Identities=36% Similarity=0.579 Sum_probs=157.5
Q ss_pred CcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhC---------CC------
Q 008100 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETG---------TH------ 158 (577)
Q Consensus 94 ~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g---------~~------ 158 (577)
++|+|+++|||+||. |||||+++++++|+++||+||+|++|++++|||+||+|||.+|++.. ..
T Consensus 1 ~~f~i~~~pPy~nG~-lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~ 79 (382)
T cd00817 1 PVFVIDTPPPNVTGS-LHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLE 79 (382)
T ss_pred CcEEEecCCCCCCCc-chHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHH
Confidence 579999999999998 99999999999999999999999999999999999999999987642 22
Q ss_pred -chhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCc
Q 008100 159 -PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGV 237 (577)
Q Consensus 159 -~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~ 237 (577)
++++++++++.|+++|++||+++||++++.|++|.|.+.++++|.+|+++|+||++.++|+|||.|+|+||+.||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev---- 155 (382)
T cd00817 80 KCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV---- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh----
Confidence 235788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcCeEEEecccchhhHhhhhHHHhhc
Q 008100 238 SERGGHPVIRKPMRQWMLKITEYADRLLDD 267 (577)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~ 267 (577)
|++||.+++.+.++||||+|++|+++|++.
T Consensus 156 c~~cg~~~~~~~~~qwf~~l~~~~~~l~~~ 185 (382)
T cd00817 156 CSRSGDVIEPLLKPQWFVKVKDLAKKALEA 185 (382)
T ss_pred cccCCCeEEEEecCeeEEehHHHHHHHHHH
Confidence 889999999999999999999988776543
No 30
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=5.9e-44 Score=374.71 Aligned_cols=149 Identities=37% Similarity=0.702 Sum_probs=139.2
Q ss_pred CcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHh-CCCc-------------
Q 008100 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIET-GTHP------------- 159 (577)
Q Consensus 94 ~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~-g~~~------------- 159 (577)
++|+|+++|||+||. ||||||++++++|+++||+||+|++|.+++||||||+|||.+|++. |+.+
T Consensus 1 ~~f~i~~~pP~vnG~-lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~ 79 (338)
T cd00818 1 PEFVFHDGPPYANGL-PHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFN 79 (338)
T ss_pred CCeEEecCCCCCCCC-chHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHH
Confidence 469999999999998 9999999999999999999999999999999999999999999875 7654
Q ss_pred ---hhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccC
Q 008100 160 ---KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG 236 (577)
Q Consensus 160 ---~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~ 236 (577)
+++++++++.|+++|++||++.||++++.|++++|.+.++++|.+|+++|+||++.++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~---------------- 143 (338)
T cd00818 80 AKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW---------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee----------------
Confidence 5788899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcCeEEEecccchhhHhhhhHHHhh
Q 008100 237 VSERGGHPVIRKPMRQWMLKITEYADRLLD 266 (577)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~ 266 (577)
+++.++++||||+++++++.+++
T Consensus 144 -------~v~~~~~~qwf~~l~~~~~~l~~ 166 (338)
T cd00818 144 -------PLIYRATPQWFIRVTKIKDRLLE 166 (338)
T ss_pred -------EEEEEecCeEEEEcHHHHHHHHH
Confidence 67889999999999888776543
No 31
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=7.8e-37 Score=340.26 Aligned_cols=193 Identities=20% Similarity=0.310 Sum_probs=182.7
Q ss_pred CCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHH
Q 008100 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR 171 (577)
Q Consensus 92 ~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (577)
.+++|+|+++|||+||. ||||||++++++|+++||+||+|++|.+++|+|+||+||+.+|.+.|..+.++++++.+.++
T Consensus 67 ~~~~~~ittp~pY~NG~-~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~ 145 (616)
T PLN02224 67 EADTFVLTTPLYYVNAP-PHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYR 145 (616)
T ss_pred CCCeEEEeCCCCCCCCC-CchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 46779999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhcc-CccccCCcCeEEEec
Q 008100 172 TQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVD-GVSERGGHPVIRKPM 250 (577)
Q Consensus 172 ~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~-~~~~~~~~~~~~~~~ 250 (577)
+++++|||++| ++++|+++.|.+.++++|.+|+++|+||++.++++|||+|++.+++.|+.+ +.|..||.+++.+++
T Consensus 146 ~~~~~l~I~~D--~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~~~~~~~~~~~~~~~~e 223 (616)
T PLN02224 146 TLWKDLDIAYD--KFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARKE 223 (616)
T ss_pred HHHHHcCCCCC--cCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcCCCCCCCCCCcceEEec
Confidence 99999999665 999999999999999999999999999999999999999999999999965 578899999999999
Q ss_pred ccchhhHhhhhHHHhhccCCC---CCCHHHHHHHHHhhhc
Q 008100 251 RQWMLKITEYADRLLDDLDDL---DWPESVKEMQRNWIGR 287 (577)
Q Consensus 251 ~~~~~~l~~y~~~l~~~l~~~---~~p~~~~~~~~~~i~~ 287 (577)
++|||+|++|++.|.+++++. .+|+.+++++.+||..
T Consensus 224 ~~~ff~Ls~~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~ 263 (616)
T PLN02224 224 DNYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKS 263 (616)
T ss_pred ceEEEEhHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhc
Confidence 999999999999999999743 4799999999999954
No 32
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-36 Score=328.69 Aligned_cols=192 Identities=27% Similarity=0.463 Sum_probs=178.8
Q ss_pred CCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHH
Q 008100 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (577)
Q Consensus 93 ~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (577)
.++|+|++++|||||. |||||++.++.+||++||+||+|++|.|+.|.|.||+||+.+|+++|++|+++++++.+.+++
T Consensus 4 ~~~~~VTtalpY~Ng~-~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~ 82 (558)
T COG0143 4 MKKILVTTALPYPNGP-PHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKE 82 (558)
T ss_pred CCcEEEecCCCCCCCC-cchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4689999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhh-------------------
Q 008100 173 QLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEV------------------- 233 (577)
Q Consensus 173 ~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev------------------- 233 (577)
.++.|+|++| .+.+|.++.|.+.++++|.+|+++|+||.+...++||+.|+++|.+.+|
T Consensus 83 ~~~~l~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~ 160 (558)
T COG0143 83 LFKALNISFD--NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCEN 160 (558)
T ss_pred HHHHhCCccc--ccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhh
Confidence 9999999998 9999999999999999999999999999999999999998888866555
Q ss_pred ----------ccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCC---CCCHHHHHHHHHhhhc
Q 008100 234 ----------VDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDL---DWPESVKEMQRNWIGR 287 (577)
Q Consensus 234 ----------~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~---~~p~~~~~~~~~~i~~ 287 (577)
.+++|.+||.+++.+++++|||+|++|+++|+++++.. .||++++++..+||..
T Consensus 161 Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~ 227 (558)
T COG0143 161 CGRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKE 227 (558)
T ss_pred ccCcCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCccccCChHHHHHHHHHHHc
Confidence 34556667777788889999999999999999999854 5999999999999954
No 33
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=5.1e-36 Score=342.77 Aligned_cols=195 Identities=20% Similarity=0.341 Sum_probs=180.4
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCcchhhH-hHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHH
Q 008100 90 DTSKPKFYVLDMFPYPSGAGLHVGHPLG-YTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNIN 168 (577)
Q Consensus 90 ~~~~~~f~i~~~pPypng~~LHiGHa~~-~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~ 168 (577)
..++++|+|+.++||+||. |||||+++ ++.+|+++||+||+|++|+|+.|+|+||+||+.+|++.|..|+++++++.+
T Consensus 13 ~~~~~~~~ITt~~pY~Ng~-~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~ 91 (801)
T PLN02610 13 IPGKRNILITSALPYVNNV-PHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHA 91 (801)
T ss_pred CCCCCCEEEeCCCCCCCCC-cccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3456789999999999998 99999997 677999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhc--------------
Q 008100 169 RFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVV-------------- 234 (577)
Q Consensus 169 ~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~-------------- 234 (577)
.|+++|++|||++| ++++|+++.|.+.++++|.+|+++|+||++...++||+.|+++|++..|+
T Consensus 92 ~~~~~~~~l~i~~D--~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~ 169 (801)
T PLN02610 92 IHKEVYDWFDISFD--KFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSAR 169 (801)
T ss_pred HHHHHHHHcCCccc--cCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccc
Confidence 99999999999877 99999999999999999999999999999999999999999999988774
Q ss_pred -----------------cCccccCCcCeEEEecccchhhHhhhhHHHhhccCC----CCCCHHHHHHHHHhhhc
Q 008100 235 -----------------DGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD----LDWPESVKEMQRNWIGR 287 (577)
Q Consensus 235 -----------------~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~----~~~p~~~~~~~~~~i~~ 287 (577)
+++|.+||.+++.++++||||+|++|+++|.+++++ -.|+.+++.++.+||..
T Consensus 170 Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~ 243 (801)
T PLN02610 170 GDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRD 243 (801)
T ss_pred cchhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhC
Confidence 344556788999999999999999999999999974 24899999999999954
No 34
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.1e-35 Score=331.30 Aligned_cols=191 Identities=31% Similarity=0.459 Sum_probs=183.3
Q ss_pred CcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHH
Q 008100 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQ 173 (577)
Q Consensus 94 ~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (577)
++|+|+.++|||||. |||||+++++++|+++||+||+|++|.++.|+|+||+||+.+|++.|+.++++++++.+.|+++
T Consensus 4 ~~~~it~~~py~ng~-~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~ 82 (648)
T PRK12267 4 KTFYITTPIYYPNGK-PHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKEL 82 (648)
T ss_pred CCEEEeeCCCCCCCC-cccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 579999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhcc-CccccCCcCeEEEeccc
Q 008100 174 LKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVD-GVSERGGHPVIRKPMRQ 252 (577)
Q Consensus 174 l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~-~~~~~~~~~~~~~~~~~ 252 (577)
|++|||++| .+++|+++.|.+.++++|.+|+++|+||++...++||+.|+++|++.++.+ +.|++||.+++.++++|
T Consensus 83 l~~lgI~~D--~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~~~ 160 (648)
T PRK12267 83 WKKLDISYD--KFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKEES 160 (648)
T ss_pred HHHcCCCCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcCCCCCCcCeEEecce
Confidence 999999887 899999999999999999999999999999999999999999999999888 89999999999999999
Q ss_pred chhhHhhhhHHHhhccCCC---CCCHHHHHHHH-Hhhhc
Q 008100 253 WMLKITEYADRLLDDLDDL---DWPESVKEMQR-NWIGR 287 (577)
Q Consensus 253 ~~~~l~~y~~~l~~~l~~~---~~p~~~~~~~~-~~i~~ 287 (577)
|||+|++|+++|.+++++. .||+.+++... +||..
T Consensus 161 ~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~ 199 (648)
T PRK12267 161 YFFRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKP 199 (648)
T ss_pred EEEEcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhC
Confidence 9999999999999999754 48999999888 99954
No 35
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6e-35 Score=332.02 Aligned_cols=191 Identities=25% Similarity=0.392 Sum_probs=180.0
Q ss_pred CcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHH
Q 008100 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQ 173 (577)
Q Consensus 94 ~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (577)
++|+|+.+||||||. |||||+++++++|+++||+||+|++|.+++|+|+||+||+.+|++.|++++++++++.+.|+++
T Consensus 2 ~~~~itt~~py~ng~-~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 80 (673)
T PRK00133 2 RKILVTCALPYANGP-IHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRD 80 (673)
T ss_pred CCEEEeCCCCCCCCc-ccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 469999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhc-------------------
Q 008100 174 LKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVV------------------- 234 (577)
Q Consensus 174 l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~------------------- 234 (577)
|++|||++| .+++|+++.|.+.++++|.+|+++|+||++..+++||+.|+++|++..|+
T Consensus 81 ~~~l~i~~d--~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~c 158 (673)
T PRK00133 81 FAGFGISFD--NYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVC 158 (673)
T ss_pred HHHhCCCCC--CCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhc
Confidence 999999887 78999999999999999999999999999999999999999999987764
Q ss_pred ----------cCccccCCcCeEEEecccchhhHhhhhHHHhhccCC-CCCCHHHHHHHHHhhhc
Q 008100 235 ----------DGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD-LDWPESVKEMQRNWIGR 287 (577)
Q Consensus 235 ----------~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~-~~~p~~~~~~~~~~i~~ 287 (577)
+++|.+||.+++.++++||||++++|+++|.+++++ ..||+.+++++.+||..
T Consensus 159 g~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 222 (673)
T PRK00133 159 GATYSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSGELQPNVANKMKEWLEE 222 (673)
T ss_pred cccCChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Confidence 445777889999999999999999999999999864 56999999999999943
No 36
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=3.7e-35 Score=313.05 Aligned_cols=188 Identities=32% Similarity=0.556 Sum_probs=166.9
Q ss_pred EEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Q 008100 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (577)
Q Consensus 96 f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (577)
|+|+.++|||||. |||||+..++.+|+++||+||+|++|.++.|+|+||++|+.+|+++|++|+++++++.+.|++.|+
T Consensus 1 ~~ITt~~pY~Ng~-lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~ 79 (391)
T PF09334_consen 1 FYITTPIPYPNGD-LHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLE 79 (391)
T ss_dssp EEEEEEEEETSSS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHH
T ss_pred CEEecCCCCCCCC-CCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 7899999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCc-------------cccCC
Q 008100 176 SLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGV-------------SERGG 242 (577)
Q Consensus 176 ~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~-------------~~~~~ 242 (577)
+|||++| ++..|.++.|.+.++++|.+|+++|+||++...++||+.|+++|++.+|+ +. |+.||
T Consensus 80 ~~~I~~D--~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~-g~CP~C~~~~a~g~~Ce~cG 156 (391)
T PF09334_consen 80 ALNISYD--RFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVE-GTCPYCGSDKARGDQCENCG 156 (391)
T ss_dssp HTT---S--EEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGET-CEETTT--SSCTTTEETTTS
T ss_pred HcCCCCc--ceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceee-ccccCcCccccCCCcccCCC
Confidence 9999988 99999999999999999999999999999999999999999999999984 22 34555
Q ss_pred cCe-----------------EEEecccchhhHhhhhHHHhhccCCCC--CCHHHHHHHHHhhhc
Q 008100 243 HPV-----------------IRKPMRQWMLKITEYADRLLDDLDDLD--WPESVKEMQRNWIGR 287 (577)
Q Consensus 243 ~~~-----------------~~~~~~~~~~~l~~y~~~l~~~l~~~~--~p~~~~~~~~~~i~~ 287 (577)
.++ +.+++++|||+|++|++.|.+++++.. ||+.+++++++||.+
T Consensus 157 ~~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~ 220 (391)
T PF09334_consen 157 RPLEPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPDFPPPRVREIVRNWLKE 220 (391)
T ss_dssp SBEECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTTSSHHHHHHHHHHHHHT
T ss_pred CCcccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCCCCCChhHHHHHHHHhhc
Confidence 554 488899999999999999999998653 999999999999954
No 37
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-34 Score=323.61 Aligned_cols=190 Identities=28% Similarity=0.515 Sum_probs=177.8
Q ss_pred CcEEEEcCCCCCCCCCCCcchhhHh-HHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHH
Q 008100 94 PKFYVLDMFPYPSGAGLHVGHPLGY-TATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (577)
Q Consensus 94 ~~f~i~~~pPypng~~LHiGHa~~~-v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (577)
++|+|+.+|||+||. |||||++++ +++|+++||+||+|++|.++.|+|+||+||+.+|+++|+.++++++++.+.|++
T Consensus 3 ~~~~i~~~~py~ng~-~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 81 (556)
T PRK12268 3 MRILITSAWPYANGP-LHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKE 81 (556)
T ss_pred CcEEEecCCCCCCCC-ccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 469999999999998 999999997 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhcc-----------------
Q 008100 173 QLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVD----------------- 235 (577)
Q Consensus 173 ~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~----------------- 235 (577)
++++|||++| .++.|++++|.+.++++|.+|+++|+||++.++++|||.|+|+|++..|..
T Consensus 82 ~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~ 159 (556)
T PRK12268 82 DFKKLGISYD--LFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDN 159 (556)
T ss_pred HHHHcCCcCC--CCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhh
Confidence 9999999766 789999999999999999999999999999999999999999999888742
Q ss_pred ------------CccccCCcCeEEEecccchhhHhhhhHHHhhccCC-CCCCHHHHHHHHHhhh
Q 008100 236 ------------GVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD-LDWPESVKEMQRNWIG 286 (577)
Q Consensus 236 ------------~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~-~~~p~~~~~~~~~~i~ 286 (577)
+.|.+||.+++.++++||||++++|++.|.+.++. ..||+..++...+||.
T Consensus 160 cg~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~ 223 (556)
T PRK12268 160 CGALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNWLK 223 (556)
T ss_pred ccccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHHHHHHHHHHh
Confidence 24555667889999999999999999999999985 4699999999999996
No 38
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=100.00 E-value=2.7e-34 Score=273.47 Aligned_cols=183 Identities=50% Similarity=0.905 Sum_probs=133.0
Q ss_pred HHhhhccCCceEEEEeecCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchhh
Q 008100 282 RNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLER 361 (577)
Q Consensus 282 ~~~i~~~~~~~~~f~l~~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (577)
+|||||+.|+.+.|++.+. +..|.|+||||+||+|.++||++|+|+++..+. +....+.+|+..+...+..+.
T Consensus 1 rNWIGkS~G~~i~F~i~~~-----~~~i~vFTTrpdTifGvtfials~~H~lv~~l~--~~~~~l~~fi~~~~~~~~~~~ 73 (185)
T PF13603_consen 1 RNWIGKSEGAEIDFKIKGS-----NEKIEVFTTRPDTIFGVTFIALSPEHPLVKKLA--ENNPELQEFIEKCKKIKNSER 73 (185)
T ss_dssp HHHH-EEEEEEEEEEBTTS-----SCEEEEEES-GGGGGG--EEEEETTSCHHHHCT--TTHHHHHHHHHHHHTS-HHHH
T ss_pred CCCcCCcccEEEEEEecCC-----CCEEEEEECCcchhhCceEEEECCCCHHHHhhh--hhhhhHHHHHHHHhcCCHhHh
Confidence 6999999999999999754 358999999999999999999999999887663 334556777776655544444
Q ss_pred hhhhhcccccccceEEecCCCCCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCC--Ccccc
Q 008100 362 TELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDES--SSQSE 439 (577)
Q Consensus 362 ~~~~~~~~~~~~G~~~~~P~~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~--~~~~~ 439 (577)
......+.|.++|.++.||++++++||+.++||.+++|||+||.+|||+++||++|++||||+..||.+.+.. .....
T Consensus 74 ~~~~~~k~Gv~tg~~aihP~t~~~iPI~va~yVl~~yGtgAVmgvPahD~rD~~FAk~~~lpi~~Vi~~~~~~~~~~~~~ 153 (185)
T PF13603_consen 74 NKDFKEKEGVFTGLYAIHPLTGKKIPIYVANYVLMDYGTGAVMGVPAHDERDFEFAKKYNLPIKQVIKPKDDNEEIDNKQ 153 (185)
T ss_dssp HHCSSS--EEEEEEEEE-TTTS-EEEEEEETTS-TTSTTSEEEE-CCC-HHHHHHHHHHT------EEBSSSS---STTS
T ss_pred hhhccccccCcCCCEEECCCCCCCccEEEECceeecCCcceEEEcCCCCHHHHHHHHHcCCCeeEEEcCCCCcccccccc
Confidence 3344567789999999999999999999999999999999999999999999999999999999999877543 22235
Q ss_pred ccccccceEeccCccccccccCCCCHHHHHHHHHHHHH
Q 008100 440 KAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAE 477 (577)
Q Consensus 440 ~~~~~~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~ 477 (577)
.+|.+.|.|+++. .++||+.++|..+|+++|+
T Consensus 154 ~~~~~~G~l~nS~------~f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 154 EAYTGDGILINSG------EFNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp S---S--EE-SSG------GGTTSBHHHHHHHHHHHHH
T ss_pred cCcCCCEEEEeCC------CCCCCCHHHHHHHHHHHhC
Confidence 6789999999875 6999999999999999884
No 39
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=4.2e-34 Score=298.35 Aligned_cols=174 Identities=29% Similarity=0.507 Sum_probs=165.9
Q ss_pred cEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHH
Q 008100 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQL 174 (577)
Q Consensus 95 ~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l 174 (577)
+|+|+.+|||+||. |||||+++++++|+++||+||+|++|.+++|+|+||+||+.+|+++|+.++++++++++.|++++
T Consensus 1 ~~~it~~~Py~ng~-~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l 79 (319)
T cd00814 1 KVLITTALPYVNGV-PHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLF 79 (319)
T ss_pred CEEEEeCCCCCCCC-cchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 58999999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccch
Q 008100 175 KSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWM 254 (577)
Q Consensus 175 ~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~ 254 (577)
++|||.+| .++.|+++.|.+.++++|++|+++|++|++...++||+.|+++|+ +.++++|||
T Consensus 80 ~~LgI~~D--~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~----------------e~~~~~~~f 141 (319)
T cd00814 80 KWLNISFD--YFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP----------------EWREEEHYF 141 (319)
T ss_pred HHcCCcCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee----------------EEEeeeeEE
Confidence 99999776 889999999999999999999999999999999999999999999 567889999
Q ss_pred hhHhhhhHHHhhccCCC---CCCHHHHHHHHHhhhc
Q 008100 255 LKITEYADRLLDDLDDL---DWPESVKEMQRNWIGR 287 (577)
Q Consensus 255 ~~l~~y~~~l~~~l~~~---~~p~~~~~~~~~~i~~ 287 (577)
|+|++|++.|.+.+++. .||+.+++++++||..
T Consensus 142 f~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~ 177 (319)
T cd00814 142 FRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKE 177 (319)
T ss_pred EEhHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhC
Confidence 99999999999988754 4999999999999964
No 40
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.4e-34 Score=316.07 Aligned_cols=191 Identities=28% Similarity=0.457 Sum_probs=181.0
Q ss_pred CcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHH
Q 008100 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQ 173 (577)
Q Consensus 94 ~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (577)
++|+|+++|||+||. +||||+++++++|+++||+||+|++|.++.|+|+||+||+.+|++.|..+.++++++.+.|+++
T Consensus 1 ~~~~i~~~~P~~~g~-~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 79 (511)
T PRK11893 1 KKFYITTPIYYPNGK-PHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRL 79 (511)
T ss_pred CCEEEecCCCCCCCC-cccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 369999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccC--ccccCCcCeEEEecc
Q 008100 174 LKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG--VSERGGHPVIRKPMR 251 (577)
Q Consensus 174 l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~--~~~~~~~~~~~~~~~ 251 (577)
|++|||.+| .++.|+++.|.+.++++|.+|+++|+||++.+.|+||+.|+++|++.|+.++ .|++||.+++.++++
T Consensus 80 l~~l~I~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~ 157 (511)
T PRK11893 80 WEALNISYD--DFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEE 157 (511)
T ss_pred HHHhCCCcC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecC
Confidence 999999776 7899999999999999999999999999999999999999999999999884 499999999999999
Q ss_pred cchhhHhhhhHHHhhccCC-C--CCCHHHHHHHHHhhhc
Q 008100 252 QWMLKITEYADRLLDDLDD-L--DWPESVKEMQRNWIGR 287 (577)
Q Consensus 252 ~~~~~l~~y~~~l~~~l~~-~--~~p~~~~~~~~~~i~~ 287 (577)
||||+++.|++.|.+.+++ . .+|+..++...+|+.+
T Consensus 158 ~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~ 196 (511)
T PRK11893 158 SYFFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKS 196 (511)
T ss_pred eEEEEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHC
Confidence 9999999999999998875 2 4799999988999854
No 41
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=6.3e-34 Score=316.62 Aligned_cols=189 Identities=25% Similarity=0.413 Sum_probs=176.9
Q ss_pred EEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Q 008100 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (577)
Q Consensus 96 f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (577)
|+|+.+||||||. |||||+++++.+|+++||+||+|++|.+++|+|+||+||+.+|+++|+.++++++++.+.|+++++
T Consensus 1 ~~it~~~P~~ng~-lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~ 79 (530)
T TIGR00398 1 ILITTALPYANGK-PHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWK 79 (530)
T ss_pred CEEecCCCCCCCC-cccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 5899999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhc---------------------
Q 008100 176 SLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVV--------------------- 234 (577)
Q Consensus 176 ~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~--------------------- 234 (577)
+|||++| .++.|+++.|.+.++++|.+|+++|+||++..+++||+.|+|+|++.+|+
T Consensus 80 ~LgI~~D--~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~ 157 (530)
T TIGR00398 80 WLNISFD--RFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGR 157 (530)
T ss_pred HhCCCCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccc
Confidence 9999877 67889999999999999999999999999999999999999999999654
Q ss_pred --------cCccccCCcCeEEEecccchhhHhhhhHHHhhccCC----CCCCHHHHHHHHHhhhc
Q 008100 235 --------DGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD----LDWPESVKEMQRNWIGR 287 (577)
Q Consensus 235 --------~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~----~~~p~~~~~~~~~~i~~ 287 (577)
++.|.+||.+++.++++||||++++|+++|++.+++ ..||+.++++..+||..
T Consensus 158 ~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 222 (530)
T TIGR00398 158 HLEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKG 222 (530)
T ss_pred cCCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhC
Confidence 344677889999999999999999999999999973 35899999999999964
No 42
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-32 Score=293.23 Aligned_cols=310 Identities=25% Similarity=0.413 Sum_probs=224.5
Q ss_pred chhhhHHHHHHHHHCCCccCCC--CCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccc
Q 008100 66 FHEIEPKWQSYWENNRTFRTPD--EIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDA 143 (577)
Q Consensus 66 ~~~iE~~~~~~W~~~~~f~~~~--~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~ 143 (577)
..+||+++|+.|+++++|+... +..++++||+++-+.||.||. ||+||+++..-.|+..-|+||+|++|++++|++|
T Consensus 14 L~eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~-LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHC 92 (1080)
T KOG0437|consen 14 LLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGR-LHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHC 92 (1080)
T ss_pred HHHHHHHHHHhhhhhhheeccCchhcccccCceeEeccccccCce-eeccceeehhhhHHHHHHHHhcCceEEeeccccc
Confidence 3579999999999999998653 456789999999999999998 9999999999999999999999999999999999
Q ss_pred cChHHHHHHHHh-------CCCc------------------------------hhhH------------------HHHHH
Q 008100 144 FGLPAEQYAIET-------GTHP------------------------------KITT------------------LRNIN 168 (577)
Q Consensus 144 ~Glpie~~a~~~-------g~~~------------------------------~~~~------------------~~~~~ 168 (577)
.|+||-..|.++ |..+ +..+ +.-|.
T Consensus 93 TGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~ 172 (1080)
T KOG0437|consen 93 TGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIK 172 (1080)
T ss_pred CCCccHHhHHHHHHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhh
Confidence 999996554331 2211 0000 00011
Q ss_pred H--------------HHHHHHHhCCCCCCCCceeCCC--hhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchh
Q 008100 169 R--------------FRTQLKSLGFSYDWNREISTIE--PAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEE 232 (577)
Q Consensus 169 ~--------------~~~~l~~lGi~~Dw~~~~~T~d--~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~E 232 (577)
. -.++++++|..+||+|.+.|.| |.|..+|.|+|.+|.+.|.|..+.+-..|||.++++..|++
T Consensus 173 ~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHD 252 (1080)
T KOG0437|consen 173 KFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHD 252 (1080)
T ss_pred cccChhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccccc
Confidence 1 1578999999999999999987 89999999999999999999999999999999999999999
Q ss_pred hccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHHHHhhhccCCceEEEEeecCCCCCccceEEEe
Q 008100 233 VVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVY 312 (577)
Q Consensus 233 v~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~~~~~~~~f~l~~~~~~~~~~~l~iw 312 (577)
...|... ....++..+++-. ..+... + +.-.+.+++++++
T Consensus 253 R~sGEgV-~PqeytliKle~l----e~~p~~---------------------------------l--~~~~~~~v~lvAa 292 (1080)
T KOG0437|consen 253 RASGEGV-GPQEYTLIKLEVL----EPFPKA---------------------------------L--SSLKDLRVYLVAA 292 (1080)
T ss_pred cccCCCC-CcceEEEEEEEec----ccchhh---------------------------------c--cccccceeeeeeh
Confidence 8654321 1111222221100 000000 0 0001235799999
Q ss_pred cCCCCccccCcEEEEcCCCccchhhccccchhhH--------HHHHHHHhcccchhhhhhhhcccccccceEEecCCC-C
Q 008100 313 TTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNI--------EEYKNLASRKSDLERTELQKEKTGVFSGCYARNPAS-G 383 (577)
Q Consensus 313 TT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~-~ 383 (577)
|.||+|++|.+...|+|+..|.......+....+ ..|..+.... -....+....+..+.|..+..|+. .
T Consensus 293 TLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t~raa~NmsyQ~~tk~~--g~~~~~~~i~G~~~iGa~l~aPlsv~ 370 (1080)
T KOG0437|consen 293 TLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIATERAARNMSYQKLTKER--GVVSCLVTITGYDLIGAPLSAPLSVY 370 (1080)
T ss_pred hcCCccccCccceEEcCCccEEeEEecCCceEEEeehHHHhhcchhhccccC--CcccceeeecchhhcCCcccCcchhh
Confidence 9999999999999999999985332222111111 1121111000 000011122344788888888985 4
Q ss_pred CeeeEEeecccccCCCCCceeccCCCChhhHHHHH
Q 008100 384 EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFAL 418 (577)
Q Consensus 384 ~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~ 418 (577)
..+.+++..-|..+.|||+|.++|+..+|||...+
T Consensus 371 ~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~ 405 (1080)
T KOG0437|consen 371 ERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQ 405 (1080)
T ss_pred heeeeccceeeeccCCceeEEeCCCCCchhhhHHH
Confidence 56788899999999999999999999999998874
No 43
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=6.5e-33 Score=288.61 Aligned_cols=165 Identities=64% Similarity=1.196 Sum_probs=159.4
Q ss_pred cEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHH
Q 008100 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQL 174 (577)
Q Consensus 95 ~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l 174 (577)
||+|+++||||||. +||||+++++++|+++||+||+|++|.+++|+|+||+||+.+|++.|.+++++++++.+.|++++
T Consensus 1 k~~it~~~Py~ng~-~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~ 79 (314)
T cd00812 1 KFYILVMFPYPSGA-LHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQL 79 (314)
T ss_pred CeEEecCCCCCCCC-ccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 68999999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccch
Q 008100 175 KSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWM 254 (577)
Q Consensus 175 ~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~ 254 (577)
++|||++||++++.|+++.|.+.++++|.+|+++|+||++..+|+|| ++++|||
T Consensus 80 ~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~--------------------------~~~~~~f 133 (314)
T cd00812 80 KRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC--------------------------KLLDQWF 133 (314)
T ss_pred HHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee--------------------------CccceEE
Confidence 99999999999999999999999999999999999999999999999 4578999
Q ss_pred hhH--hhhhHHHhhccCCCC-CCHHHHHHHHHhhh
Q 008100 255 LKI--TEYADRLLDDLDDLD-WPESVKEMQRNWIG 286 (577)
Q Consensus 255 ~~l--~~y~~~l~~~l~~~~-~p~~~~~~~~~~i~ 286 (577)
|++ ++|++.+.+.++... ||+.+++.+++||.
T Consensus 134 ~~l~~~~~~~~l~~~l~~~~~~p~~~~~~~~~~l~ 168 (314)
T cd00812 134 LKYSETEWKEKLLKDLEKLDGWPEEVRAMQENWIG 168 (314)
T ss_pred EEcCcHHHHHHHHHHHHhcCcCCHHHHHHHHHHhe
Confidence 999 999999999998765 99999999999995
No 44
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.98 E-value=4.8e-32 Score=282.18 Aligned_cols=163 Identities=38% Similarity=0.699 Sum_probs=154.1
Q ss_pred cEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCC-------------Cchh
Q 008100 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGT-------------HPKI 161 (577)
Q Consensus 95 ~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~-------------~~~~ 161 (577)
+|+|+++|||+||. |||||+++++++|+++||+||+|++|.+++||||||+||+.+|++.+. .+++
T Consensus 1 ~~~i~~~pP~~~g~-~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
T cd00668 1 KFYVTTPPPYANGS-LHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKE 79 (312)
T ss_pred CEEEecCCCCCCCC-cchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHH
Confidence 59999999999998 999999999999999999999999999999999999999999998876 6788
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccC
Q 008100 162 TTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERG 241 (577)
Q Consensus 162 ~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~ 241 (577)
+++++++.|+++|++|||++||++++.|+++.|.+.++++|.+|+++|+||++.++|
T Consensus 80 ~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v----------------------- 136 (312)
T cd00668 80 FVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV----------------------- 136 (312)
T ss_pred HHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee-----------------------
Confidence 999999999999999999999999999999999999999999999999999999988
Q ss_pred CcCeEEEecccchhhHhhhhHHHhhccCCCC-CCHHHHHHHHHhhhc
Q 008100 242 GHPVIRKPMRQWMLKITEYADRLLDDLDDLD-WPESVKEMQRNWIGR 287 (577)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~-~p~~~~~~~~~~i~~ 287 (577)
+...+|||+++++++++.+.++... +|+..++...+||..
T Consensus 137 ------~~~~~~f~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~l~~ 177 (312)
T cd00668 137 ------RITEQWFFDMPKFKEKLLKALRRGKIVPEHVKNRMEAWLES 177 (312)
T ss_pred ------EeeeeEEEEcHHHHHHHHHHHhcCCcCChHHHHHHHHHHhC
Confidence 4667899999999999999998765 899999999999954
No 45
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.8e-27 Score=241.43 Aligned_cols=193 Identities=23% Similarity=0.399 Sum_probs=180.4
Q ss_pred CCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHH
Q 008100 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (577)
Q Consensus 93 ~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (577)
.+.|+++.+.-|+|.. +||||+++.+++|+++||+|++|..|.+..|+|.||++|+.+|...|..|.+.+++..+.|++
T Consensus 38 ~~~~~lTTPifYvNAa-PHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~q 116 (578)
T KOG0436|consen 38 GETFVLTTPIFYVNAA-PHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQ 116 (578)
T ss_pred CceeEEecceeecCCC-cchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHH
Confidence 3479999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccC-------ccccCCcCe
Q 008100 173 QLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG-------VSERGGHPV 245 (577)
Q Consensus 173 ~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~-------~~~~~~~~~ 245 (577)
.++.+||.++ ++++|.||.|++.|++++..+.++|+||++....+||.+|+|++.+.+|... .+..+|+++
T Consensus 117 L~k~~gi~yt--~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~v 194 (578)
T KOG0436|consen 117 LWKDAGIAYT--KFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPV 194 (578)
T ss_pred HHHHhCcchh--heeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCce
Confidence 9999999988 9999999999999999999999999999999999999999999999999642 234578899
Q ss_pred EEEecccchhhHhhhhHHHhhccCC---CCCCHHHHHHHHHhhhcc
Q 008100 246 IRKPMRQWMLKITEYADRLLDDLDD---LDWPESVKEMQRNWIGRS 288 (577)
Q Consensus 246 ~~~~~~~~~~~l~~y~~~l~~~l~~---~~~p~~~~~~~~~~i~~~ 288 (577)
+.+++.+|||+|+.|++.|.+.+.. ...|+.....+..||..+
T Consensus 195 v~~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktg 240 (578)
T KOG0436|consen 195 VWRKEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTG 240 (578)
T ss_pred eEecccceeeeHHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcC
Confidence 9999999999999999999999974 469999999999999543
No 46
>PLN02946 cysteine-tRNA ligase
Probab=99.85 E-value=3e-21 Score=211.46 Aligned_cols=134 Identities=20% Similarity=0.192 Sum_probs=124.1
Q ss_pred CccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchh
Q 008100 82 TFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKI 161 (577)
Q Consensus 82 ~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~ 161 (577)
.|.+. ++++-++|+| -|++.+. +||||+++++..|+++||+++.||+|.|+.|+|+||.+|+.+|++.|+++.+
T Consensus 72 ~f~P~---~~~~v~~Y~C--GpTvYd~-~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~e 145 (557)
T PLN02946 72 LFKPK---VEGKVGMYVC--GVTAYDL-SHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPIS 145 (557)
T ss_pred ccccC---CCCceeEEEe--CCccCCC-CccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHH
Confidence 46654 5567788888 6888888 9999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCC
Q 008100 162 TTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPAL 224 (577)
Q Consensus 162 ~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~ 224 (577)
+++++++.|.+++++|||. + .++.|...+|+..++.++++|+++|++|.+.+.||||+.-
T Consensus 146 la~~y~~~f~~d~~~LnI~-~--p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~ 205 (557)
T PLN02946 146 LSRRYCEEFLSDMAYLHCL-P--PSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK 205 (557)
T ss_pred HHHHHHHHHHHHHHHCCCC-C--CCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc
Confidence 9999999999999999997 4 6888999999999999999999999999999999999864
No 47
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.84 E-value=6.4e-21 Score=208.26 Aligned_cols=134 Identities=24% Similarity=0.247 Sum_probs=119.0
Q ss_pred CccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchh
Q 008100 82 TFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKI 161 (577)
Q Consensus 82 ~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~ 161 (577)
.|++. ++++.++|+| .|+|+|. +||||++++++.|+++||+||+||+|.|+.|+|++|.+|+.+|.+.|..+++
T Consensus 15 ~f~p~---~~~~v~~yvc--gPtvy~~-~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e 88 (463)
T PRK00260 15 EFKPL---EPGKVKMYVC--GPTVYDY-AHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKE 88 (463)
T ss_pred ecccC---CCCcceEEEe--CCccCCC-cccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHH
Confidence 45544 4466788888 7888998 9999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCC-CCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCC
Q 008100 162 TTLRNINRFRTQLKSLGF-SYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALG 225 (577)
Q Consensus 162 ~~~~~~~~~~~~l~~lGi-~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~ 225 (577)
+++++++.|+++|++||| ..||. ..+. .|...+++++++|+++|++|++..+|+||+..-
T Consensus 89 ~~~~~~~~f~~~~~~Lgi~~~d~~--~r~t--~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~ 149 (463)
T PRK00260 89 LTERYIAAFHEDMDALNVLPPDIE--PRAT--EHIPEIIELIERLIDKGHAYEADGDVYFDVRKF 149 (463)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcc--cccc--ccHHHHHHHHHHHHHCCCEEEecCeEEEecccc
Confidence 999999999999999999 55642 2222 588889999999999999999999999999764
No 48
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.83 E-value=1.9e-20 Score=204.28 Aligned_cols=136 Identities=21% Similarity=0.155 Sum_probs=121.3
Q ss_pred CccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchh
Q 008100 82 TFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKI 161 (577)
Q Consensus 82 ~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~ 161 (577)
.|.+. ++++.++|+| .|||++. +||||+++++..|+++||+|++||+|.++.|+|+||.+|+.+|.+.|+.+.+
T Consensus 13 ~f~p~---~~~~v~~yvc--gptvy~~-~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e 86 (465)
T TIGR00435 13 EFEPL---VQGKVKMYVC--GPTVYDY-CHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYE 86 (465)
T ss_pred ccccC---CCCcceEEEe--cCccCCC-cccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHH
Confidence 45544 4567888888 6788887 9999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeec-cCcccCCCCCc
Q 008100 162 TTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAE-VPVNWCPALGT 226 (577)
Q Consensus 162 ~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~-~~v~wc~~~~t 226 (577)
+++++++.|++++++|||++|+-.. . ...|...+.+++++|+++|++|+.. ..|+||+.|-.
T Consensus 87 ~a~~~~~~f~~dl~~LgI~~d~~~~-r--aT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~ 149 (465)
T TIGR00435 87 VSERFIEAYFEDMKALNVLPPDLEP-R--ATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFK 149 (465)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcCCc-c--ccccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccc
Confidence 9999999999999999999883222 2 2279999999999999999999998 99999998853
No 49
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.79 E-value=4.7e-19 Score=188.05 Aligned_cols=126 Identities=24% Similarity=0.284 Sum_probs=113.5
Q ss_pred CCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHH
Q 008100 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR 171 (577)
Q Consensus 92 ~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (577)
++-++|+|.+.|| +. +||||++++|..|+++||+|+.||+|.|+.|+|+||.+|+.+|++.|+.++++++++.+.|+
T Consensus 35 ~~v~~YvCGpTvY--~~-~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~ 111 (411)
T TIGR03447 35 PEAGMYVCGITPY--DA-THLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFR 111 (411)
T ss_pred CcceEEEeCCccC--CC-cccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5678899866666 66 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCC-CCCCCceeCCChhhHHHHHHHHHHHHHCCceeeecc----CcccCCCC
Q 008100 172 TQLKSLGFS-YDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEV----PVNWCPAL 224 (577)
Q Consensus 172 ~~l~~lGi~-~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~----~v~wc~~~ 224 (577)
+++++|||. .| .+.+|++. ++.++.++++|+++|++|.... .|||+.+-
T Consensus 112 ~d~~~Lni~~~d--~~~RaTe~--i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~ 165 (411)
T TIGR03447 112 EDMEALRVLPPR--DYIGAVES--IDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEA 165 (411)
T ss_pred HHHHHcCCCCCC--cccCCCCC--HHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccc
Confidence 999999986 44 66666655 7899999999999999999886 79998753
No 50
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.78 E-value=1e-18 Score=189.69 Aligned_cols=133 Identities=20% Similarity=0.147 Sum_probs=120.6
Q ss_pred CccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcc----------cccccChHHHHH
Q 008100 82 TFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM----------GWDAFGLPAEQY 151 (577)
Q Consensus 82 ~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~----------G~D~~Glpie~~ 151 (577)
.|.+. ++++-++|+| -||+++. +||||+++++..|+++||+++.||+|.|+. |.|+||.+|..+
T Consensus 15 ~f~p~---~~~~v~mYvC--GpTvy~~-~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~ 88 (490)
T PRK14536 15 EFQPI---EHGHVRLYGC--GPTVYNY-AHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKS 88 (490)
T ss_pred ccccC---CCCceEEEee--CCccCCC-cccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHH
Confidence 45544 4566778887 7999998 999999999999999999999999999997 888889999999
Q ss_pred HHHhCCCchhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCC
Q 008100 152 AIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223 (577)
Q Consensus 152 a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~ 223 (577)
|.+.|+.+.+++.++++.|++++++|||..+ . +.|..++|...++.++++|+++|++|++...|+||+.
T Consensus 89 A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~--~-~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~ 157 (490)
T PRK14536 89 AQEHGKSVLEIAAHYTAAFFRDTARLNIERP--S-IVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIR 157 (490)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC--c-eecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCC
Confidence 9999999999999999999999999999887 3 4477899999999999999999999999999999883
No 51
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.77 E-value=1.4e-18 Score=183.70 Aligned_cols=128 Identities=23% Similarity=0.297 Sum_probs=114.6
Q ss_pred CCC-CCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHH
Q 008100 90 DTS-KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNIN 168 (577)
Q Consensus 90 ~~~-~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~ 168 (577)
.++ +-++|+|.+.|| +. +||||+|+++..|+++||+|++|++|.|+.|+|+||.+|+.+|++.|++++++++++.+
T Consensus 5 ~~~~~v~~YvCGpTvY--~~-~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~ 81 (384)
T PRK12418 5 APGGTATMYVCGITPY--DA-THLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIA 81 (384)
T ss_pred CCCCeeEEEecCCCCC--CC-CccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHH
Confidence 345 567888854445 76 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC-CCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeecc----CcccCCCC
Q 008100 169 RFRTQLKSLGF-SYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEV----PVNWCPAL 224 (577)
Q Consensus 169 ~~~~~l~~lGi-~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~----~v~wc~~~ 224 (577)
.|.+++++||| ..| .+.+|++. .+.++.++++|.++|++|+... .|||++.-
T Consensus 82 ~f~~d~~~Lni~~~~--~~~raTe~--i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~ 138 (384)
T PRK12418 82 LFREDMEALRVLPPR--DYVGAVES--IPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDA 138 (384)
T ss_pred HHHHHHHHhCCCCCC--ccccCCCC--HHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCc
Confidence 99999999997 555 67777764 8999999999999999999998 79998754
No 52
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.77 E-value=1.9e-18 Score=190.62 Aligned_cols=130 Identities=21% Similarity=0.155 Sum_probs=119.2
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHH
Q 008100 90 DTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINR 169 (577)
Q Consensus 90 ~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~ 169 (577)
++++-++|+| -|++.+. +||||+|++|..|+++||+++.||+|.|+.|+|+||.+|..+|++.|+.+.++++++++.
T Consensus 245 ~~~~V~mYvC--GPTVYd~-~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~ 321 (699)
T PRK14535 245 DPENVRMYVC--GMTVYDY-CHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQA 321 (699)
T ss_pred CCCceEEEec--CCcCCCC-CcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3455677777 6788887 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeee-ccCcccCCCCC
Q 008100 170 FRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA-EVPVNWCPALG 225 (577)
Q Consensus 170 ~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~-~~~v~wc~~~~ 225 (577)
|.+++++|||..+ .+.|...+|+..++.++++|.++|++|++ ...||||+.+-
T Consensus 322 F~~d~~~LnI~~p---~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f 375 (699)
T PRK14535 322 MHEDADALGVLRP---DIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREF 375 (699)
T ss_pred HHHHHHHcCCCCC---cEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccc
Confidence 9999999999988 35777889999999999999999999987 45899999864
No 53
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.76 E-value=1.1e-18 Score=171.37 Aligned_cols=95 Identities=22% Similarity=0.168 Sum_probs=87.6
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHH
Q 008100 90 DTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINR 169 (577)
Q Consensus 90 ~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~ 169 (577)
.+++.++|++ .|+|++. +||||++++++.|+++||+||+|++|.++.|+|+||+||+.+|++.|+.++++++++.+.
T Consensus 17 ~~~~~~~y~~--gpt~y~~-~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~ 93 (213)
T cd00672 17 NPGLVTMYVC--GPTVYDY-AHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKE 93 (213)
T ss_pred CCCCceEEEe--CCccCCC-cccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3467789998 5666677 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCC-CCCCceeC
Q 008100 170 FRTQLKSLGFSY-DWNREIST 189 (577)
Q Consensus 170 ~~~~l~~lGi~~-Dw~~~~~T 189 (577)
|++++++|||+. | .+.+|
T Consensus 94 f~~~~~~l~i~~~d--~~~rt 112 (213)
T cd00672 94 FFEDMKALNVLPPD--VVPRV 112 (213)
T ss_pred HHHHHHHcCCCCCC--cceee
Confidence 999999999998 5 77777
No 54
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=1.4e-18 Score=177.84 Aligned_cols=195 Identities=21% Similarity=0.326 Sum_probs=177.5
Q ss_pred CCCCcEEEEcCCCCCCCCCCCcchhhH-hHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHH
Q 008100 91 TSKPKFYVLDMFPYPSGAGLHVGHPLG-YTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINR 169 (577)
Q Consensus 91 ~~~~~f~i~~~pPypng~~LHiGHa~~-~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~ 169 (577)
.++...+++.+.||.|.. +|+|++.+ ...+||+|||.+.+|++.+|+.|+|.+|.++|.+|.+.|..|++.++++...
T Consensus 11 ~n~rnilitsalpyvnnv-phlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcdKyh~i 89 (567)
T KOG1247|consen 11 PNERNILITSALPYVNNV-PHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCDKYHGI 89 (567)
T ss_pred CCccceeeecccceeccc-ccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHHHhcchh
Confidence 456678999999999997 99999999 7779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCch------------------
Q 008100 170 FRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANE------------------ 231 (577)
Q Consensus 170 ~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~------------------ 231 (577)
++..+.-++|++| .+-+|..+...+.+|.+|.+|+++|++-...-.+.||..|++.|++.
T Consensus 90 hk~vy~Wf~IdfD--~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~ARGDq 167 (567)
T KOG1247|consen 90 HKVVYDWFKIDFD--EFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDDARGDQ 167 (567)
T ss_pred HHHHHHhhccccc--ccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCCCCCccccchh
Confidence 9999999999777 88899999999999999999999999999999999999888888665
Q ss_pred -----------hhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCC----CCCCHHHHHHHHHhhhcc
Q 008100 232 -----------EVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD----LDWPESVKEMQRNWIGRS 288 (577)
Q Consensus 232 -----------Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~----~~~p~~~~~~~~~~i~~~ 288 (577)
|+.+++|..|...++.+...+.||.|.+++++|++++.. -.|..+.+...++||...
T Consensus 168 cd~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~g 239 (567)
T KOG1247|consen 168 CDKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDG 239 (567)
T ss_pred hhhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHHcc
Confidence 445567777888889999999999999999999999873 359999999999999543
No 55
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.73 E-value=1.4e-17 Score=187.61 Aligned_cols=134 Identities=19% Similarity=0.243 Sum_probs=119.1
Q ss_pred CccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHH-HcCCcccCcccccccChHHHHHHHHhCCC-c
Q 008100 82 TFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKR-MQGYNVLHPMGWDAFGLPAEQYAIETGTH-P 159 (577)
Q Consensus 82 ~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~r-m~G~~V~~~~G~D~~Glpie~~a~~~g~~-~ 159 (577)
.|.+. +.++-++|+|.+.+| +. +||||||++|..|++.||++ +.||+|.|++|+|+||.+|+.+|.+.|+. +
T Consensus 52 ~f~p~---~~~~v~~Y~CGPTvY--d~-~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~ 125 (651)
T PTZ00399 52 EFVPQ---NGRQVRWYTCGPTVY--DS-SHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIF 125 (651)
T ss_pred ccccC---CCCeeEEEEeCCCcc--CC-cccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcH
Confidence 45544 456678999854444 66 89999999999999999999 99999999999999999999999999998 9
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCC
Q 008100 160 KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPAL 224 (577)
Q Consensus 160 ~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~ 224 (577)
.++++++.+.|.+++++|||..+ ..+.+. .+|+..+..++++|+++|++|...+.|+|+..-
T Consensus 126 ~el~~~~~~~f~~d~~~Lni~~p--~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~ 187 (651)
T PTZ00399 126 LELARKWEKEFFEDMKALNVRPP--DVITRV-SEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEA 187 (651)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC--ccccCc-CccHHHHHHHHHHHHHCCCEEEECCeEEEEchh
Confidence 99999999999999999999887 444444 799999999999999999999999999998864
No 56
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.72 E-value=2.1e-17 Score=162.76 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=107.0
Q ss_pred CCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCC
Q 008100 101 MFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (577)
Q Consensus 101 ~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~ 180 (577)
..|.|||+ |||||+|+++++|+++|++++.|++|.+..++|++|.+|+..|.+.+ .+++.++++++.+++.+++|||.
T Consensus 7 ~spN~~~~-~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~-~~~~~~~~~~~~~~~~~~~L~i~ 84 (212)
T cd00671 7 VSANPTGP-LHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE-KWRKLVEESIKADLETYGRLDVR 84 (212)
T ss_pred cCCCCCCC-ccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCc
Confidence 57999998 99999999999999999999999999999999999999999887653 37888999999999999999999
Q ss_pred CCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCC
Q 008100 181 YDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALG 225 (577)
Q Consensus 181 ~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~ 225 (577)
+| .+..|.+. ...+..++++|.++|++|+....+++|+.+.
T Consensus 85 ~d--~~~~es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~ 125 (212)
T cd00671 85 FD--VWFGESSY--LGLMGKVVELLEELGLLYEEDGALWLDLTEF 125 (212)
T ss_pred Cc--eecchhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEechhh
Confidence 88 66666654 8889999999999999999999888887544
No 57
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.69 E-value=8.8e-17 Score=173.90 Aligned_cols=127 Identities=21% Similarity=0.167 Sum_probs=114.1
Q ss_pred CCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCc---------ccc-cccChHHHHHHHHhCCCchh
Q 008100 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHP---------MGW-DAFGLPAEQYAIETGTHPKI 161 (577)
Q Consensus 92 ~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~---------~G~-D~~Glpie~~a~~~g~~~~~ 161 (577)
++-+.|+| -|++... +||||++++|..|+++||++++||+|.|+ .|. |+||.+|+.+|++.|+++.+
T Consensus 20 ~~v~mY~C--GpTVYd~-~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e 96 (481)
T PRK14534 20 SDVKVYAC--GPTVYNY-AHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYE 96 (481)
T ss_pred CceEEEeC--CCCCCCC-CCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHH
Confidence 35567776 6788887 89999999999999999999999999994 555 55588999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCC
Q 008100 162 TTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPAL 224 (577)
Q Consensus 162 ~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~ 224 (577)
+++++++.|.+++++|||..| ..+.| .++|+..++.++++|.++|++|.....|+||+.+
T Consensus 97 ~a~~~~~~f~~d~~~Lni~~~--~~~p~-atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~ 156 (481)
T PRK14534 97 ISRFFTEAFFDDCKKLNIVYP--DKVLV-ASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC 156 (481)
T ss_pred HHHHHHHHHHHHHHHcCCCCC--ceecC-ccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc
Confidence 999999999999999999988 55555 6899999999999999999999999999999987
No 58
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.66 E-value=4e-16 Score=172.75 Aligned_cols=127 Identities=22% Similarity=0.245 Sum_probs=113.9
Q ss_pred CCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHH
Q 008100 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR 171 (577)
Q Consensus 92 ~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (577)
.++++.|.-+.|+|||+ +||||+|+.+++|+++|++++.||+|.++.++|++|.++...+.+.+...+..++.+++.|+
T Consensus 109 ~~~~v~Ie~~spnp~g~-lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~ 187 (507)
T PRK01611 109 KGKKVVVEYVSANPTGP-LHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIK 187 (507)
T ss_pred CCCEEEEEecCCCCCCC-CcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888889999998 99999999999999999999999999999999999999988877766667788899999999
Q ss_pred HHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCcee-eeccCcccC
Q 008100 172 TQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAY-QAEVPVNWC 221 (577)
Q Consensus 172 ~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy-~~~~~v~wc 221 (577)
+++++|||.+| .++.+.+..+...+.+++++|.++|++| +.++.++++
T Consensus 188 ~~l~~LgI~~D--~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~ 236 (507)
T PRK01611 188 EDLDRLGVHFD--VWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVR 236 (507)
T ss_pred HHHHHcCCeee--EEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEE
Confidence 99999999987 7777888888889999999999999999 777766654
No 59
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.61 E-value=1.5e-15 Score=154.05 Aligned_cols=128 Identities=23% Similarity=0.252 Sum_probs=109.0
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHH
Q 008100 90 DTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINR 169 (577)
Q Consensus 90 ~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~ 169 (577)
++++-++|+| -|++... +||||+|+++..|++.||++..||+|.++.++.+...+|..+|.+.|+...++++++.+.
T Consensus 5 ~~~~v~~Y~C--GPTVYd~-~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~ 81 (300)
T PF01406_consen 5 NPGKVRMYVC--GPTVYDY-AHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEE 81 (300)
T ss_dssp CTTEEEEEEE--EEBTTS---BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred CCCeEEEEcC--CCCCCCC-CCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHH
Confidence 4566778888 6777777 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeec-cCcccCCC
Q 008100 170 FRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAE-VPVNWCPA 223 (577)
Q Consensus 170 ~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~-~~v~wc~~ 223 (577)
|.++|++|||.-. ...+...+++..+..++++|.++|++|... +.|+|+..
T Consensus 82 f~~dm~~Lnv~~p---~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~ 133 (300)
T PF01406_consen 82 FFEDMKALNVLPP---DHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVS 133 (300)
T ss_dssp HHHHHHHTT-------SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CC
T ss_pred HHHHHHHcCCCCC---ccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeec
Confidence 9999999999765 355666789999999999999999999999 99999875
No 60
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.57 E-value=3.7e-15 Score=156.19 Aligned_cols=129 Identities=24% Similarity=0.337 Sum_probs=103.0
Q ss_pred CCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCccccccc------------------ChHHHHHHHH
Q 008100 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAF------------------GLPAEQYAIE 154 (577)
Q Consensus 93 ~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~------------------Glpie~~a~~ 154 (577)
+++++|.+|+ ||||. +||||++.++..|+++||+|++|++|.++.|+|+| |.|+...+..
T Consensus 18 ~~~~~v~tgi-~psG~-~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p 95 (353)
T cd00674 18 KEKYVVASGI-SPSGH-IHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDP 95 (353)
T ss_pred CCeEEEecCC-CCCCC-cccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhh
Confidence 3568887776 59998 99999999999999999999999999999999999 5666666666
Q ss_pred hCCCchhhHHHHHHHHHHHHHHhCCCCCCCCceeCCC-hhhHHHHHHHHHHHHHCCceeeec-------cC------ccc
Q 008100 155 TGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIE-PAYYKWTQWIFLQLLKRGLAYQAE-------VP------VNW 220 (577)
Q Consensus 155 ~g~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d-~~~~~~v~~~f~~L~~kGliy~~~-------~~------v~w 220 (577)
.|..+ .+++++.+.+++.|++|||++| ++.+.+ ...-.....++..|.+++.|.+-. .+ .+.
T Consensus 96 ~g~~~-~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~ 171 (353)
T cd00674 96 FGCCE-SYAEHFERPFEESLEKLGIEVE---FISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYPFMPY 171 (353)
T ss_pred cCCCH-HHHHHHHHHHHHHHHHcCCeee---eeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCceeeeee
Confidence 66655 8999999999999999999998 455554 444467778888888888875422 21 355
Q ss_pred CCCCCccC
Q 008100 221 CPALGTVL 228 (577)
Q Consensus 221 c~~~~t~L 228 (577)
|+.|+ .+
T Consensus 172 c~~cg-~~ 178 (353)
T cd00674 172 CEKCG-KD 178 (353)
T ss_pred cCCcC-cc
Confidence 88888 44
No 61
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=2.2e-14 Score=152.47 Aligned_cols=135 Identities=24% Similarity=0.227 Sum_probs=118.7
Q ss_pred CccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchh
Q 008100 82 TFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKI 161 (577)
Q Consensus 82 ~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~ 161 (577)
.|.+. .+++-+.|+| -|++... .||||||++|..|++.||++..||.|.|+.++.+...+|..+|.+.|....+
T Consensus 14 ~F~P~---~~~~V~mYvC--GpTVYd~-~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~e 87 (464)
T COG0215 14 EFVPI---DPGKVKMYVC--GPTVYDY-AHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIRE 87 (464)
T ss_pred cccCC---CCCeEEEEec--CCccCCc-cccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHH
Confidence 45554 4556788888 6788886 8999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeee-ccCcccCCCCC
Q 008100 162 TTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA-EVPVNWCPALG 225 (577)
Q Consensus 162 ~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~-~~~v~wc~~~~ 225 (577)
.++++++.|.+++.+|||.-. ...+.-.+|+..+.+++++|.+||++|.. .+.|+|++.+-
T Consensus 88 v~~~~i~~f~~D~~aL~v~~p---~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f 149 (464)
T COG0215 88 VAERYIAAFFEDMDALNVLPP---DIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKF 149 (464)
T ss_pred HHHHHHHHHHHHHHHhCCCCC---cccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccc
Confidence 999999999999999999532 13345568999999999999999999998 67999988653
No 62
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.31 E-value=3.4e-12 Score=117.91 Aligned_cols=75 Identities=28% Similarity=0.248 Sum_probs=71.8
Q ss_pred cCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Q 008100 100 DMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (577)
Q Consensus 100 ~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (577)
...|+|||. +||||++++++.|+++||+|++|++|.++.|+|++|.++...+.+.+..+++++..+++.++++++
T Consensus 3 ~~~p~~~~~-~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 77 (143)
T cd00802 3 FSGITPNGY-LHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE 77 (143)
T ss_pred ecCCCCCCC-ccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 357999998 999999999999999999999999999999999999999999999999999999999999999988
No 63
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=8.8e-12 Score=131.39 Aligned_cols=134 Identities=22% Similarity=0.288 Sum_probs=112.6
Q ss_pred CccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHH-HcCCcccCcccccccChHHHHHHH--HhCCC
Q 008100 82 TFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKR-MQGYNVLHPMGWDAFGLPAEQYAI--ETGTH 158 (577)
Q Consensus 82 ~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~r-m~G~~V~~~~G~D~~Glpie~~a~--~~g~~ 158 (577)
.|-+. +.++-.+|+| -|++... -||||||+||-.||+.|+++ .-||+|.|++++.+...+|...|. +.+..
T Consensus 47 ~fip~---~~~~v~wY~C--GpTvYD~-SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~ 120 (586)
T KOG2007|consen 47 VFIPN---NGNKVTWYIC--GPTVYDS-SHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEK 120 (586)
T ss_pred eeeeC---CCCeEEEEEe--cCcccch-hhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccc
Confidence 45544 4566788888 6888886 79999999999999999999 999999999999999999998886 23444
Q ss_pred chhhHHH---HHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCC
Q 008100 159 PKITTLR---NINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPAL 224 (577)
Q Consensus 159 ~~~~~~~---~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~ 224 (577)
+-.+.+. +.++|.++|.+|++... ...|.=.+|...+..+++++.++|+.|..++.|||+..-
T Consensus 121 ~~~l~~~F~~~e~eF~~DM~~LnvLpP---tv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~k 186 (586)
T KOG2007|consen 121 PLSLSERFCYYEEEFLQDMAALNVLPP---TVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDK 186 (586)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCCCCC---cccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccc
Confidence 5444444 55999999999999764 566667799999999999999999999999999998754
No 64
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.25 E-value=2.7e-12 Score=141.75 Aligned_cols=131 Identities=24% Similarity=0.266 Sum_probs=94.8
Q ss_pred CcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccC--------hHH-HHHHHHhCCC------
Q 008100 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFG--------LPA-EQYAIETGTH------ 158 (577)
Q Consensus 94 ~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~G--------lpi-e~~a~~~g~~------ 158 (577)
+.++|.+|+ ||||. +||||++.++.+|+++|++|+.|++|.++.|+|+|| +|. +..+...|..
T Consensus 23 ~~~~~~~g~-~psG~-~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~ 100 (510)
T PRK00750 23 PPVVVETGI-GPSGL-PHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPD 100 (510)
T ss_pred CcEEEEeCC-CCCCC-cccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCC
Confidence 346666665 79998 999999999999999999999999999999999997 454 2333444543
Q ss_pred ----chhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhH-HHHHHHHHHHHHCCceee------ec-cC------ccc
Q 008100 159 ----PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYY-KWTQWIFLQLLKRGLAYQ------AE-VP------VNW 220 (577)
Q Consensus 159 ----~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~-~~v~~~f~~L~~kGliy~------~~-~~------v~w 220 (577)
++.+++.+.+.+++.|+++||.+| ++.+.+.... .....+...|.+++.|.+ +. .+ .+.
T Consensus 101 p~G~~~~~~~~~~~~~~~~~~~~gi~~d---~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~~~~~P~~pi 177 (510)
T PRK00750 101 PFGCHESYAEHFNAPLREFLDRFGIEYE---FISATECYKSGRYDEAILTALENRDEIMEILLPYLGEERQATYSPFLPI 177 (510)
T ss_pred CCCCchHHHHHHHHHHHHHHHHcCCceE---EEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccCCCeeeeeee
Confidence 678999999999999999999888 4444442222 333344444555555432 21 11 355
Q ss_pred CCCCCccCC
Q 008100 221 CPALGTVLA 229 (577)
Q Consensus 221 c~~~~t~Ls 229 (577)
|+.|+..++
T Consensus 178 c~~cg~~~~ 186 (510)
T PRK00750 178 CPKCGKVLT 186 (510)
T ss_pred CCCCCccce
Confidence 999998775
No 65
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.01 E-value=2.6e-10 Score=125.40 Aligned_cols=130 Identities=19% Similarity=0.243 Sum_probs=93.6
Q ss_pred CcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCccccccc------------------ChHHHHHHHHh
Q 008100 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAF------------------GLPAEQYAIET 155 (577)
Q Consensus 94 ~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~------------------Glpie~~a~~~ 155 (577)
.+++|.+|.+ |||. +||||++..+.+|+++|++|++|++|.++.|+|+| |.|+.......
T Consensus 18 ~~~~~~tg~~-psG~-~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~ 95 (515)
T TIGR00467 18 NLYTVASGIT-PSGH-IHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPE 95 (515)
T ss_pred CeEEEecCCC-CCCC-ccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCC
Confidence 3688888877 9998 99999999999999999999999999999999999 66665555455
Q ss_pred CCCchhhHHHHHHHHHHHHHHhCCCCCCCCceeCCC----hhhHHHHHHHHHHHHHCCce---eee-cc-----C-cccC
Q 008100 156 GTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIE----PAYYKWTQWIFLQLLKRGLA---YQA-EV-----P-VNWC 221 (577)
Q Consensus 156 g~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d----~~~~~~v~~~f~~L~~kGli---y~~-~~-----~-v~wc 221 (577)
|.. ..+++.+...+.+.|..|||.++ ++++.+ -.|.+.+..++.+--+=.-| |++ .. | .+.|
T Consensus 96 g~~-~s~~~h~~~~~~~~l~~~gi~~e---~~s~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~~~~~~~~~P~~pic 171 (515)
T TIGR00467 96 GCK-TSYAEHFLIPFLESLPVLGINPE---FIRASKQYTSGLYASQIKIALDHRKEISEILNEYRTSKLEENWYPISVFC 171 (515)
T ss_pred CCc-HHHHHHHHHHHHHHHHHcCCeEE---EEEHHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcCCccCCCceeeeeec
Confidence 553 78899999999999999999876 333332 13444444443332211111 111 11 1 3569
Q ss_pred CCCCccCC
Q 008100 222 PALGTVLA 229 (577)
Q Consensus 222 ~~~~t~Ls 229 (577)
+.|+..++
T Consensus 172 ~~cGrv~~ 179 (515)
T TIGR00467 172 ENCGRDTT 179 (515)
T ss_pred CCcCccCc
Confidence 99998765
No 66
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=98.93 E-value=6.1e-09 Score=117.14 Aligned_cols=124 Identities=20% Similarity=0.258 Sum_probs=92.9
Q ss_pred CCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHH---HhCC--------C---
Q 008100 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAI---ETGT--------H--- 158 (577)
Q Consensus 93 ~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~---~~g~--------~--- 158 (577)
++++.|.-..|+|+|+ +||||+|+.+++|+++|++++.||+|....-+.+.|..+-..+. +.+. .
T Consensus 111 ~~~v~ve~~spn~~~~-~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~ 189 (566)
T TIGR00456 111 NKKIIIEFSSANPAGP-LHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDH 189 (566)
T ss_pred CCeEEEEecCCCCCCC-CchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCccccCcccCChH
Confidence 4567887789999998 99999999999999999999999999877766666655432110 0000 0
Q ss_pred ----------------------------------c------hhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHH
Q 008100 159 ----------------------------------P------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWT 198 (577)
Q Consensus 159 ----------------------------------~------~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v 198 (577)
+ +..+...++.+++++++|||.+| .+++..+..|...+
T Consensus 190 ~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD--~~~~E~e~~~~~~~ 267 (566)
T TIGR00456 190 GLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFD--SFVWEGESVKNGMV 267 (566)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcee--eeeccccccccccH
Confidence 0 01123345678999999999998 66666666777788
Q ss_pred HHHHHHHHHCCceeeeccCccc
Q 008100 199 QWIFLQLLKRGLAYQAEVPVNW 220 (577)
Q Consensus 199 ~~~f~~L~~kGliy~~~~~v~w 220 (577)
..++.+|.++|++|++ +.++.
T Consensus 268 ~~v~~~L~~~g~~~~~-Ga~~~ 288 (566)
T TIGR00456 268 PKVLEDLKEKGLVVED-GALWL 288 (566)
T ss_pred HHHHHHHHHCCCEEEc-CCEEE
Confidence 9999999999999977 65543
No 67
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=2.3e-08 Score=111.41 Aligned_cols=148 Identities=22% Similarity=0.283 Sum_probs=105.6
Q ss_pred hhhHHHHHHHHHCC-CccCCCCCCCCC-CcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccC
Q 008100 68 EIEPKWQSYWENNR-TFRTPDEIDTSK-PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFG 145 (577)
Q Consensus 68 ~iE~~~~~~W~~~~-~f~~~~~~~~~~-~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~G 145 (577)
.....+++...+.+ .|... +.++ ++.+|=-.=|-|+|+ |||||+||.+++|+++|.++..||+|....-..+.|
T Consensus 92 ~~~~~~~~~l~~~~~~~G~~---~~~~~~kV~iE~sSaNptkp-lHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G 167 (577)
T COG0018 92 FLAELLLEILEKGDDRYGRS---KLGKGKKVVIEYSSANPTGP-LHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWG 167 (577)
T ss_pred HHHHHHHHHHHhcccccCcc---ccCCCCEEEEEEeCCCCCCC-cccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHH
Confidence 45666777777644 34222 2233 345555457999998 999999999999999999999999999888888888
Q ss_pred hHHHHHHH-------H-hC---------------------CCch---h---------------------hHHHHHHHHHH
Q 008100 146 LPAEQYAI-------E-TG---------------------THPK---I---------------------TTLRNINRFRT 172 (577)
Q Consensus 146 lpie~~a~-------~-~g---------------------~~~~---~---------------------~~~~~~~~~~~ 172 (577)
..+...+. + .+ ..+. . .++..++.|++
T Consensus 168 ~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~ 247 (577)
T COG0018 168 TQIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKE 247 (577)
T ss_pred HHHHHHHHHHHHhccccccCCCCcchHHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 65532110 0 00 0010 0 22334566889
Q ss_pred HHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccC--cccC
Q 008100 173 QLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVP--VNWC 221 (577)
Q Consensus 173 ~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~--v~wc 221 (577)
++.+|||.+| .+++..+..|...+..++..|.++|++|+.++. |.|.
T Consensus 248 ~l~~l~V~fD--~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~ 296 (577)
T COG0018 248 TLDRLGVKFD--VYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVDLL 296 (577)
T ss_pred HHHHhCcccc--eeeccchhhhcccHHHHHHHHHhcCCEeeeCCeEEEehh
Confidence 9999999998 777778888888899999999999999995543 4454
No 68
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=98.71 E-value=5e-08 Score=103.59 Aligned_cols=126 Identities=23% Similarity=0.242 Sum_probs=88.6
Q ss_pred CCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHH-------HH-h--------
Q 008100 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYA-------IE-T-------- 155 (577)
Q Consensus 92 ~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a-------~~-~-------- 155 (577)
..++.+|=-.=|-|+|+ |||||+||.+++|+|+|.++..||+|....-..+.|..+-..+ .+ .
T Consensus 18 ~~~kv~VE~sSpNp~kp-lHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~ 96 (354)
T PF00750_consen 18 KGKKVVVEFSSPNPTKP-LHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKH 96 (354)
T ss_dssp TSEEEEEEE---BTTSS--BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHH
T ss_pred CCCEEEEEecCCCCCCC-CcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccc
Confidence 34556665567889998 9999999999999999999999999999999999998663211 00 0
Q ss_pred ---------------CC---Cchh---------------------hHHH-HHHHHHHHHHHhCCCCCCCCceeCCChhhH
Q 008100 156 ---------------GT---HPKI---------------------TTLR-NINRFRTQLKSLGFSYDWNREISTIEPAYY 195 (577)
Q Consensus 156 ---------------g~---~~~~---------------------~~~~-~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~ 195 (577)
.. .... ...+ ..+.++++|.+|++.+| .++...+..+.
T Consensus 97 l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fD--v~~~E~Es~~~ 174 (354)
T PF00750_consen 97 LEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFD--VWFDESESFYS 174 (354)
T ss_dssp HHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---S--EEEEHCHHHHT
T ss_pred hhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhC--cCcccchhhhh
Confidence 00 0000 0112 44567889999999998 77777666788
Q ss_pred HHHHHHHHHHHHCCceeeeccCccc
Q 008100 196 KWTQWIFLQLLKRGLAYQAEVPVNW 220 (577)
Q Consensus 196 ~~v~~~f~~L~~kGliy~~~~~v~w 220 (577)
..+..++.+|.++|++|+.++.++.
T Consensus 175 ~~v~~vl~~L~e~g~~~~~dGa~~i 199 (354)
T PF00750_consen 175 GKVDEVLERLKEKGLLYESDGALWI 199 (354)
T ss_dssp THHHHHHHHHHCTTTEEEETTEEEE
T ss_pred hHHHHHHHHHHhCCcEEecCCcEEE
Confidence 8899999999999999987766544
No 69
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=98.64 E-value=2.1e-07 Score=104.62 Aligned_cols=122 Identities=14% Similarity=0.113 Sum_probs=89.8
Q ss_pred CCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHH---HHhCCC---c-------
Q 008100 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYA---IETGTH---P------- 159 (577)
Q Consensus 93 ~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a---~~~g~~---~------- 159 (577)
+++.+|=-.=|-|+|+ |||||+||.+++|+++|.++..||+|....-..+.|..+-..+ .+.|.. +
T Consensus 112 ~~~v~vE~sSpNp~kp-lHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l 190 (562)
T PRK12451 112 EKTVVIDYSSPNIAKP-FSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIREL 190 (562)
T ss_pred CCEEEEEecCCCCCCC-cccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHHH
Confidence 3455555567889998 9999999999999999999999999998888888887653221 111110 0
Q ss_pred ---------------------------------------hhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHH
Q 008100 160 ---------------------------------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQW 200 (577)
Q Consensus 160 ---------------------------------------~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~ 200 (577)
+..+...++.|++++.+|||.+||-. -+..|...+..
T Consensus 191 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~----~es~~~~~~~~ 266 (562)
T PRK12451 191 FKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQ----GEAFYNDLMED 266 (562)
T ss_pred HHHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeec----chHhhhhhHHH
Confidence 00122335668899999999999322 33456777899
Q ss_pred HHHHHHHCCceeeeccCcc
Q 008100 201 IFLQLLKRGLAYQAEVPVN 219 (577)
Q Consensus 201 ~f~~L~~kGliy~~~~~v~ 219 (577)
++.+|.++|++|+.++.++
T Consensus 267 v~~~L~~~g~~~e~dGa~~ 285 (562)
T PRK12451 267 FIGILEEHDLLEESEGALV 285 (562)
T ss_pred HHHHHHHCCCEEecCCeEE
Confidence 9999999999998877664
No 70
>PLN02286 arginine-tRNA ligase
Probab=98.50 E-value=9.7e-07 Score=99.39 Aligned_cols=120 Identities=18% Similarity=0.155 Sum_probs=87.7
Q ss_pred CcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHH---H-hCCC--ch-------
Q 008100 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAI---E-TGTH--PK------- 160 (577)
Q Consensus 94 ~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~---~-~g~~--~~------- 160 (577)
++.+|=-.=|-|+|+ |||||+|+.+++|+++|.++..||+|....-..+.|..+-..+. + .+.. +.
T Consensus 117 ~~v~VEfsSpNp~kp-lHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 195 (576)
T PLN02286 117 KRAVVDFSSPNIAKE-MHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIGDL 195 (576)
T ss_pred ceEEEEecCCCCCCC-CccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHHHH
Confidence 456555567889998 99999999999999999999999999988888888876532211 1 0000 00
Q ss_pred ----------------------------------------hhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHH
Q 008100 161 ----------------------------------------ITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQW 200 (577)
Q Consensus 161 ----------------------------------------~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~ 200 (577)
..+...++.|++.+.+|||.+| . .-+..|...+..
T Consensus 196 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd--~---~ges~y~~~~~~ 270 (576)
T PLN02286 196 QEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELE--E---KGESFYNPYIPG 270 (576)
T ss_pred HHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeee--e---cCchhhhhhHHH
Confidence 0112234567888999999998 2 133456677899
Q ss_pred HHHHHHHCCceeeeccCcc
Q 008100 201 IFLQLLKRGLAYQAEVPVN 219 (577)
Q Consensus 201 ~f~~L~~kGliy~~~~~v~ 219 (577)
++..|.++|++|+.++.++
T Consensus 271 vi~~L~~~g~~~e~dGa~~ 289 (576)
T PLN02286 271 VIEELESKGLVVESDGARV 289 (576)
T ss_pred HHHHHHHCCCEEeeCCceE
Confidence 9999999999998877654
No 71
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.40 E-value=4.7e-07 Score=90.19 Aligned_cols=92 Identities=20% Similarity=0.273 Sum_probs=72.0
Q ss_pred CCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCC
Q 008100 101 MFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (577)
Q Consensus 101 ~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~ 180 (577)
-+|.|||. |||||+++.++.++++| ++++.++.-+|+...+.+ .......+.|.++|+.||+
T Consensus 6 faPsPtG~-lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~-----------~~~~~~~~~i~~dL~wLGl- 67 (240)
T cd09287 6 FAPNPNGP-LHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK-----------RPDPEAYDMIPEDLEWLGV- 67 (240)
T ss_pred CCCCCCCC-ccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc-----------cchHHHHHHHHHHHHHcCC-
Confidence 37999998 99999999999999999 677778888887765431 1233445569999999999
Q ss_pred CCCCCceeCCChhhHHHHHHHHHHHHHCCceee
Q 008100 181 YDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (577)
Q Consensus 181 ~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~ 213 (577)
+|+..++ ..++.+...++.++|.++|++|.
T Consensus 68 -~~d~~~~--qS~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 68 -KWDEVVI--ASDRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred -CCCCccc--hhccHHHHHHHHHHHHHcCCccc
Confidence 7776543 34566667788999999999997
No 72
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.21 E-value=5.7e-06 Score=91.88 Aligned_cols=97 Identities=22% Similarity=0.292 Sum_probs=73.4
Q ss_pred EEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Q 008100 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (577)
Q Consensus 97 ~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (577)
+++=-+|.|||. ||||||++.++.+.++| +|...++.-+|+....++ .....+.+.|.++|+.
T Consensus 102 V~tRFaPsPtG~-LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~~-----------R~~~e~~~~I~edL~w 164 (567)
T PRK04156 102 VVMRFAPNPSGP-LHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRTK-----------RPDPEAYDMILEDLKW 164 (567)
T ss_pred EEEEeCCCCCCC-ccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCcc-----------cchHHHHHHHHHHHHH
Confidence 444458999998 99999999999999998 455556666666654221 1234556889999999
Q ss_pred hCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeee
Q 008100 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (577)
Q Consensus 177 lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~ 214 (577)
||+ +|+..++. .++.+.......+|.++|++|..
T Consensus 165 LGl--~wD~~~~q--Sdr~~~y~~~a~~Li~~G~AY~C 198 (567)
T PRK04156 165 LGV--KWDEVVIQ--SDRLEIYYEYARKLIEMGGAYVC 198 (567)
T ss_pred cCC--CCCCccCc--ccCHHHHHHHHHHHHHcCCCccC
Confidence 999 67666544 46677778899999999999963
No 73
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=97.99 E-value=2e-06 Score=89.81 Aligned_cols=17 Identities=65% Similarity=1.570 Sum_probs=15.8
Q ss_pred cCcccccCcCccccccc
Q 008100 490 LRDWLFARQRYWGEPIP 506 (577)
Q Consensus 490 ~~DWcISRQR~WG~PIP 506 (577)
..|||||||++||+|+|
T Consensus 178 ~~d~~isR~~~WG~~~P 194 (312)
T cd00668 178 LLDWAISRQRYWGTPLP 194 (312)
T ss_pred CCCeEEeccCCCCCcCC
Confidence 34999999999999999
No 74
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=97.91 E-value=2.2e-05 Score=87.16 Aligned_cols=95 Identities=20% Similarity=0.276 Sum_probs=72.3
Q ss_pred EEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Q 008100 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (577)
Q Consensus 97 ~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (577)
+++==+|.|||. ||||||++.++.+.+|| ...| .++.-+|+..- ......+.+.|.++|+.
T Consensus 94 vvtRFaPsPtG~-LHiGharaalln~~~Ar--~~~G---~~iLRidDTDp-------------~R~~~e~~~~I~edL~w 154 (560)
T TIGR00463 94 VVMRFAPNPSGP-LHIGHARAAILNQYFAK--KYKG---KLIIRFDDTDP-------------RRVKPEAYDMILEDLDW 154 (560)
T ss_pred eEEEeCCCCCCC-ccHHHHHHHHHHHHHHH--hcCC---EEEEEeCcCCc-------------ccccHHHHHHHHHHHHH
Confidence 565569999998 99999999999999997 2234 44555555542 12234578899999999
Q ss_pred hCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeee
Q 008100 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (577)
Q Consensus 177 lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~ 214 (577)
||+. |+..+ ...+|.+....+..+|.++|++|..
T Consensus 155 LGi~--~d~~~--~qSd~~~~y~~~a~~Li~~G~AY~C 188 (560)
T TIGR00463 155 LGVK--GDEVV--YQSDRIEEYYDYCRKLIEMGKAYVC 188 (560)
T ss_pred cCCC--CCccc--cccccHHHHHHHHHHHHHcCCceee
Confidence 9996 65654 4456777888999999999999974
No 75
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.76 E-value=6e-05 Score=81.80 Aligned_cols=89 Identities=24% Similarity=0.254 Sum_probs=66.4
Q ss_pred CCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCC
Q 008100 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (577)
Q Consensus 102 pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~ 181 (577)
.|-|||. ||||||++.++.-++||- ..|.-++.+--+|. ........+.|+++|+.||+.+
T Consensus 8 APSPTG~-lHiG~artAL~n~l~Ar~--~gG~fiLRIEDTD~----------------~Rs~~~~~~~I~e~L~wLGI~~ 68 (445)
T PRK12558 8 APSPTGY-LHVGNARTALLNWLYARK--HGGKFILRIDDTDL----------------ERSKQEYADAIAEDLKWLGINW 68 (445)
T ss_pred CCCCCCc-ccHHHHHHHHHHHHHHHH--hCCEEEEEeccCCc----------------ccchHHHHHHHHHHHHHcCCCC
Confidence 7999998 999999999988888773 34555544443431 2234677899999999999965
Q ss_pred CCCCceeCCChhhHHHHHHHHHHHHHCCceee
Q 008100 182 DWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (577)
Q Consensus 182 Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~ 213 (577)
| .+|+.+ +.......++.+|.++|++|+
T Consensus 69 D--e~y~QS--er~~~y~~~~e~L~e~G~AY~ 96 (445)
T PRK12558 69 D--RTFRQS--DRFDRYDEAAEKLKAAGRLYP 96 (445)
T ss_pred C--ccccHH--HHHHHHHHHHHHHHHCCCEEE
Confidence 4 655443 334578999999999999985
No 76
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=97.72 E-value=8e-05 Score=82.00 Aligned_cols=95 Identities=25% Similarity=0.318 Sum_probs=71.9
Q ss_pred EEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Q 008100 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (577)
Q Consensus 97 ~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (577)
+++==+|-|||. ||||||++.++...+||- ..|.-++.+ |+.. +.....++.+.|.++|+-
T Consensus 12 v~tRFAPsPtG~-LHiGharaAlln~l~Ar~--~gG~~iLRi---EDTD-------------p~R~~~e~~~~I~~dL~W 72 (523)
T PLN03233 12 IVTRFPPEPSGY-LHIGHAKAALLNDYYARR--YKGRLILRF---DDTN-------------PSKEKAEFEESIIEDLGK 72 (523)
T ss_pred EEEeeCCCCCCc-ccHHHHHHHHHHHHHHHH--hCCEEEEEE---CCCC-------------CCccchHHHHHHHHHHHH
Confidence 455559999998 999999999999999984 356554433 3222 233456778999999999
Q ss_pred hCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeee
Q 008100 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (577)
Q Consensus 177 lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~ 214 (577)
||+ +|+..++. .+|.+.-.....+|.++|++|..
T Consensus 73 LGl--~wD~~~~q--Sdr~~~y~~~a~~Li~~G~AY~C 106 (523)
T PLN03233 73 IEI--KPDSVSFT--SDYFEPIRCYAIILIEEGLAYMD 106 (523)
T ss_pred hCC--CCCCCccc--cccHHHHHHHHHHHHHcCCeEec
Confidence 999 46676554 45667778889999999999974
No 77
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=97.70 E-value=9.9e-05 Score=81.56 Aligned_cols=94 Identities=24% Similarity=0.296 Sum_probs=68.9
Q ss_pred EEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh
Q 008100 98 VLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSL 177 (577)
Q Consensus 98 i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 177 (577)
++=-+|-|||. ||||||++.++...+||. ..|.-++.+ |+.. +......+.+.|.++|+-|
T Consensus 53 ~tRFaPsPtG~-LHiGharaalln~~~Ar~--~gG~~iLRi---EDTD-------------p~r~~~e~~~~I~~dL~wL 113 (574)
T PTZ00437 53 YFRFPPEPNGF-LHIGHAKSMNLNFGSARA--HGGKCYLRY---DDTN-------------PETEEQVYIDAIMEMVKWM 113 (574)
T ss_pred EEEeCCCCCCc-ccHHHHHHHHHHHHHHHH--hCCEEEEEE---CCCC-------------ccccChHHHHHHHHHHHHc
Confidence 33349999998 999999999999999985 345444433 3322 2234567789999999999
Q ss_pred CCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeee
Q 008100 178 GFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (577)
Q Consensus 178 Gi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~ 214 (577)
|+ +|+..++ ...|.+...+...+|.++|++|..
T Consensus 114 Gi--~~D~~~~--qS~y~~~~ye~A~~Li~~G~AY~C 146 (574)
T PTZ00437 114 GW--KPDWVTF--SSDYFDQLHEFAVQLIKDGKAYVD 146 (574)
T ss_pred CC--CCCCCCc--CchhHHHHHHHHHHHHHcCCEEEc
Confidence 99 5556553 345666667778899999999973
No 78
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.69 E-value=0.00011 Score=75.01 Aligned_cols=89 Identities=25% Similarity=0.321 Sum_probs=68.1
Q ss_pred CCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCC
Q 008100 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (577)
Q Consensus 102 pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~ 181 (577)
.|.|||. |||||+++.++...+|| +..|.-++.+--+|. ......+.+.|.++|+-||+
T Consensus 6 APSPtG~-lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD~----------------~R~~~~~~~~I~~dL~wLGl-- 64 (272)
T TIGR03838 6 APSPSGP-LHFGSLVAALGSYLDAR--AHGGRWLVRIEDLDP----------------PREVPGAADDILRTLEAYGL-- 64 (272)
T ss_pred CCCCCCc-ccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC----------------CCCChHHHHHHHHHHHHcCC--
Confidence 7999998 99999999999999999 447776666555543 11234567889999999999
Q ss_pred CCCCc-eeCCChhhHHHHHHHHHHHHHCCceee
Q 008100 182 DWNRE-ISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (577)
Q Consensus 182 Dw~~~-~~T~d~~~~~~v~~~f~~L~~kGliy~ 213 (577)
+||.. |+.+ ++.+.-..++.+|.++|++|.
T Consensus 65 ~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~ 95 (272)
T TIGR03838 65 HWDGEVVYQS--QRHALYQAALDRLLAAGLAYP 95 (272)
T ss_pred CCCCCeeeee--CCHHHHHHHHHHHHHcCCEEe
Confidence 56653 4433 455566778999999999995
No 79
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=97.68 E-value=0.00011 Score=81.97 Aligned_cols=93 Identities=27% Similarity=0.378 Sum_probs=70.5
Q ss_pred EEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Q 008100 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (577)
Q Consensus 97 ~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (577)
+++==+|-|||. ||||||++.++...+||-. .|.-++. +|+. ++......+.+.|.++|+-
T Consensus 53 v~tRFAPsPtGy-LHIGharaAllN~l~Ar~~--gG~~iLR---iEDT-------------Dp~R~~~e~~d~IleDL~W 113 (601)
T PTZ00402 53 VVTRFPPEASGF-LHIGHAKAALINSMLADKY--KGKLVFR---FDDT-------------NPSKEKEHFEQAILDDLAT 113 (601)
T ss_pred eEEeeCCCCCCc-ccHHHHHHHHHHHHHHHHh--CCEEEEE---EcCC-------------CCcccCHHHHHHHHHHHHH
Confidence 555569999998 9999999999999999843 5544433 2332 2333456778999999999
Q ss_pred hCCCCCCCC-ceeCCChhhHHHHHHHHHHHHHCCcee
Q 008100 177 LGFSYDWNR-EISTIEPAYYKWTQWIFLQLLKRGLAY 212 (577)
Q Consensus 177 lGi~~Dw~~-~~~T~d~~~~~~v~~~f~~L~~kGliy 212 (577)
||+ +|+. .++.+ +|.+.-.....+|.++|++|
T Consensus 114 LGl--~wDe~~~~QS--dr~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 114 LGV--SWDVGPTYSS--DYMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred CCC--CCCCceeecc--ccHHHHHHHHHHHHHcCCEE
Confidence 999 6765 55543 56677788999999999999
No 80
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=97.62 E-value=0.00014 Score=76.07 Aligned_cols=90 Identities=23% Similarity=0.288 Sum_probs=61.1
Q ss_pred CCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCC
Q 008100 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (577)
Q Consensus 102 pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~ 181 (577)
.|.|||. |||||+++.++.-.+|| +..|.-++.+--+|. ......+.+.|.++|+-||+..
T Consensus 7 APsPtG~-lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD~----------------~R~~~~~~~~i~~~L~wlGl~~ 67 (314)
T PF00749_consen 7 APSPTGY-LHIGHARTALLNYLFAR--KYGGKFILRIEDTDP----------------ERCRPEFYDAILEDLRWLGLEW 67 (314)
T ss_dssp ---SSSS--BHHHHHHHHHHHHHHH--HTTSEEEEEEETSST----------------TTCHHHHHHHHHHHHHHHT---
T ss_pred CCCCCCC-cccchhHHHHHHHHHHh--ccCceEEEecccccc----------------ccchhhHHHHHHhheeEEEEec
Confidence 7999998 99999999999999998 456665555443432 1224566788999999999944
Q ss_pred CCCCceeCCChhhHHHHHHHHHHHHHCCceee
Q 008100 182 DWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (577)
Q Consensus 182 Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~ 213 (577)
| ..+|+.+ .+.+.-..+.++|.++|++|.
T Consensus 68 D-~~~~~QS--~r~~~Y~~~~~~L~~~g~aY~ 96 (314)
T PF00749_consen 68 D-YGPYYQS--DRLEIYQEAAEKLIDKGKAYP 96 (314)
T ss_dssp S-TCEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred C-CeEEeHH--HHHHHHHHHHHHHhhcCCCcc
Confidence 4 2555543 455556778889999999986
No 81
>PLN02907 glutamate-tRNA ligase
Probab=97.61 E-value=0.0002 Score=82.47 Aligned_cols=94 Identities=24% Similarity=0.380 Sum_probs=71.9
Q ss_pred EEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Q 008100 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (577)
Q Consensus 97 ~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (577)
+++==+|-|||. ||||||++.++...+|| +..|.-++.+ |+.. +.....++.+.|.++|+-
T Consensus 214 v~tRFaPsPtG~-LHiG~ar~al~n~~~Ar--~~~G~~iLR~---eDTd-------------p~r~~~e~~~~I~~dl~w 274 (722)
T PLN02907 214 VCTRFPPEPSGY-LHIGHAKAALLNQYFAR--RYKGKLIVRF---DDTN-------------PSKESDEFVENILKDIET 274 (722)
T ss_pred eEEeeCCCCCCc-ccHHHHHHHHHHHHHHH--HhCCEEEEEe---cCCC-------------CCcCChHHHHHHHHHHHH
Confidence 556669999998 99999999999999998 3456554433 3322 223355778999999999
Q ss_pred hCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceee
Q 008100 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (577)
Q Consensus 177 lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~ 213 (577)
||+ +|+..+++ .+|.+.-.+...+|.++|++|.
T Consensus 275 LG~--~~d~~~~q--S~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 275 LGI--KYDAVTYT--SDYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred cCC--CCCCcccc--cccHHHHHHHHHHHHHcCCeee
Confidence 999 56676655 4566667888999999999996
No 82
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=97.58 E-value=2.3e-05 Score=88.45 Aligned_cols=27 Identities=26% Similarity=0.403 Sum_probs=22.2
Q ss_pred ccCcccccCcCccccccceEEECCCCeee
Q 008100 489 KLRDWLFARQRYWGEPIPVVFLDGTGETV 517 (577)
Q Consensus 489 ~~~DWcISRQR~WG~PIPv~~~~~~g~~~ 517 (577)
+++||||||||+||+||| |++.+ ++.+
T Consensus 225 ~l~Dw~ISR~~~WGipiP-~~~~~-~~~i 251 (556)
T PRK12268 225 GLKPRAITRDLDWGIPVP-WPGFE-GKVF 251 (556)
T ss_pred CCCCcCceeeCCCCeeCC-CCCCC-CcEE
Confidence 678999999999999999 77654 4443
No 83
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.58 E-value=0.00019 Score=71.59 Aligned_cols=89 Identities=24% Similarity=0.267 Sum_probs=66.3
Q ss_pred CCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCC
Q 008100 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (577)
Q Consensus 102 pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~ 181 (577)
+|.|||. ||+||+++.++.-.+||- ..|.-++.+--+| +......+.+.|.++|+-||+
T Consensus 7 APsPtG~-lHlG~~~~al~~~l~Ar~--~~G~~iLRieDtD----------------~~R~~~~~~~~I~~dL~wlGl-- 65 (238)
T cd00807 7 PPEPNGY-LHIGHAKAILLNFGYAKK--YGGRCNLRFDDTN----------------PEKEEEEYVDSIKEDVKWLGI-- 65 (238)
T ss_pred CCCCCCc-ccHHHHHHHHHHHHHHHH--hCCEEEEEecCCC----------------CcccchHHHHHHHHHHHHcCC--
Confidence 7999998 999999999999999974 3555444332222 222345678899999999999
Q ss_pred CCCCceeCCChhhHHHHHHHHHHHHHCCceee
Q 008100 182 DWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (577)
Q Consensus 182 Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~ 213 (577)
+||..++. .++.+.-.....+|.++|++|.
T Consensus 66 ~wD~~~~Q--S~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 66 KPYKVTYA--SDYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred CCCCceec--ccCHHHHHHHHHHHHHcCCeec
Confidence 56555443 3455666778999999999999
No 84
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.56 E-value=0.00022 Score=73.64 Aligned_cols=91 Identities=22% Similarity=0.266 Sum_probs=66.2
Q ss_pred cCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCC
Q 008100 100 DMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGF 179 (577)
Q Consensus 100 ~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi 179 (577)
==.|.|||. |||||+++.++.-.+||-. .|.-++.+--+|. ......+.+.|.++|+.||+
T Consensus 9 RFAPSPTG~-LHlG~~rtAL~n~l~Ar~~--~G~~iLRiEDtD~----------------~R~~~~~~~~I~~dL~wlGl 69 (299)
T PRK05710 9 RFAPSPSGP-LHFGSLVAALGSWLDARAH--GGRWLLRIEDIDP----------------PREVPGAADAILADLEWLGL 69 (299)
T ss_pred EeCcCCCCc-ccHHHHHHHHHHHHHHHHc--CCEEEEEECcCCC----------------CccchHHHHHHHHHHHHCCC
Confidence 348999998 9999999999999998843 3544444332221 22345667899999999999
Q ss_pred CCCCCC-ceeCCChhhHHHHHHHHHHHHHCCceee
Q 008100 180 SYDWNR-EISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (577)
Q Consensus 180 ~~Dw~~-~~~T~d~~~~~~v~~~f~~L~~kGliy~ 213 (577)
+||. .|+.+ ++.+.-..+..+|.++|++|.
T Consensus 70 --~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 70 --HWDGPVLYQS--QRHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred --CCCCCceEee--ccHHHHHHHHHHHHHCCCcee
Confidence 6764 55543 345556778999999999985
No 85
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=97.50 E-value=0.00023 Score=78.54 Aligned_cols=92 Identities=25% Similarity=0.368 Sum_probs=65.9
Q ss_pred CCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCC
Q 008100 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (577)
Q Consensus 102 pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~ 181 (577)
+|-|||. ||||||++.++...+||- ..|.-++.+ |+.. +......+.+.|.++|+-||+..
T Consensus 6 aPsPtG~-LHiG~ar~al~n~~~A~~--~~G~~iLRi---eDTd-------------~~r~~~e~~~~I~~dL~wLG~~~ 66 (522)
T TIGR00440 6 PPEPNGY-LHIGHAKSICLNFGYAKY--YNGTCNLRF---DDTN-------------PVKEDPEYVESIKRDVEWLGFKW 66 (522)
T ss_pred CCCCCCc-ccHHHHHHHHHHHHHHHH--hCCEEEEEE---cCCC-------------cccCChHHHHHHHHHHHHcCCCC
Confidence 8999998 999999999999999983 355544433 3322 22234577899999999999944
Q ss_pred CCCCceeCCChhhHHHHHHHHHHHHHCCceeeec
Q 008100 182 DWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAE 215 (577)
Q Consensus 182 Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~ 215 (577)
| +..++.+ +|.........+|.++|++|...
T Consensus 67 d-~~~~~qS--~~~~~~~~~a~~Li~~G~AY~c~ 97 (522)
T TIGR00440 67 E-GKIRYSS--DYFDELYRYAEELIKKGLAYVDE 97 (522)
T ss_pred C-CCceEcc--ccHHHHHHHHHHHHHcCCEEeec
Confidence 3 3444443 34444556778999999999743
No 86
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00031 Score=76.82 Aligned_cols=95 Identities=24% Similarity=0.325 Sum_probs=71.5
Q ss_pred EEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Q 008100 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (577)
Q Consensus 97 ~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (577)
+++==+|-|||. ||||||++.++-..+||. ..|.-++.+--+| ++.....+.+.|.++|+-
T Consensus 10 v~tRFAPsPtG~-LHiG~artAl~N~~~Ar~--~~G~fiLRiEDTD----------------~~R~~~e~~~~I~~~L~W 70 (472)
T COG0008 10 VRTRFAPSPTGY-LHIGHARTALLNYLYARK--YGGKFILRIEDTD----------------PERETPEAEDAILEDLEW 70 (472)
T ss_pred eEEEECcCCCCc-cchHHHHHHHHHHHHHHH--hCCEEEEEecCCC----------------CCCCCHHHHHHHHHHHHh
Confidence 555558999998 999999999999999984 3566655443333 233455678899999999
Q ss_pred hCCCCCCCC-ceeCCChhhHHHHHHHHHHHHHCCceeee
Q 008100 177 LGFSYDWNR-EISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (577)
Q Consensus 177 lGi~~Dw~~-~~~T~d~~~~~~v~~~f~~L~~kGliy~~ 214 (577)
||+ +||. .|+.+ ++...-.....+|.++|++|.-
T Consensus 71 LGl--~wde~~~~QS--~r~~~Y~~~~~~Li~~G~AY~c 105 (472)
T COG0008 71 LGL--DWDEGPYYQS--ERFDIYYEYAEKLIEKGKAYVC 105 (472)
T ss_pred cCC--CCCCceeehh--hhHHHHHHHHHHHHHCCCeEEe
Confidence 999 6778 45544 4555566788999999999974
No 87
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.43 E-value=0.00036 Score=76.82 Aligned_cols=90 Identities=29% Similarity=0.375 Sum_probs=68.2
Q ss_pred CCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCC
Q 008100 101 MFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (577)
Q Consensus 101 ~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~ 180 (577)
-.|-|+|. |||||+++.++.-.+|| +..|.-++.+--+|. ......+.+.+.++|+-||+
T Consensus 9 FAPSPTG~-lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD~----------------~R~~~~~~~~i~~~L~WLGl- 68 (513)
T PRK14895 9 FAPSPTGF-LHIGSARTALFNYLFAR--HHNGKFLLRIEDTDK----------------ERSTKEAVEAIFSGLKWLGL- 68 (513)
T ss_pred eCCCCCCC-ccHHHHHHHHHHHHHHH--HcCCEEEEEECCCCc----------------cccChHHHHHHHHHHHHcCC-
Confidence 37999998 99999999999999998 456766665544432 22345678889999999999
Q ss_pred CCCC-CceeCCChhhHHHHHHHHHHHHHCCceee
Q 008100 181 YDWN-REISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (577)
Q Consensus 181 ~Dw~-~~~~T~d~~~~~~v~~~f~~L~~kGliy~ 213 (577)
||| .+|+-++ ..+.-....++|.++|++|.
T Consensus 69 -~wDe~py~QSe--R~~~Y~~~a~~Li~~G~AY~ 99 (513)
T PRK14895 69 -DWNGEVIFQSK--RNNLYKEAALKLLQNGKAYY 99 (513)
T ss_pred -CCCCCceeEeC--cHHHHHHHHHHHHHcCCeEE
Confidence 676 4565544 33455678899999999996
No 88
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=97.43 E-value=0.00035 Score=75.60 Aligned_cols=89 Identities=18% Similarity=0.257 Sum_probs=67.5
Q ss_pred CCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCC
Q 008100 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (577)
Q Consensus 102 pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~ 181 (577)
.|-|||. |||||+++.++.-.+||- ..|.-++.+--+|. ......+.+.|.++|+-||+
T Consensus 5 APSPTG~-LHiG~artAL~n~l~Ar~--~gG~fiLRiEDTD~----------------~R~~~e~~~~I~~~L~WlGl-- 63 (433)
T PRK12410 5 APSPTGD-MHIGNLRAAIFNYIVAKQ--QNEDFLIRIEDTDK----------------ERNIEGKDKEILEILNLFGI-- 63 (433)
T ss_pred CCCCCCc-ccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCC----------------CcCChHHHHHHHHHHHHcCC--
Confidence 6999998 999999999999999883 45666655544443 22345677899999999999
Q ss_pred CCCCceeCCChhhHHHHHHHHHHHHHCCceee
Q 008100 182 DWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (577)
Q Consensus 182 Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~ 213 (577)
+||..|+.++ +.+.-.++..+|.++|.+|.
T Consensus 64 ~wDe~y~QSe--R~~~Y~~~a~~Li~~G~AY~ 93 (433)
T PRK12410 64 SWDKLVYQSE--NLKFHRQMAEKLLSEKKAFA 93 (433)
T ss_pred CCCCCeehhc--cHHHHHHHHHHHHHcCCeee
Confidence 6767776654 33445568899999999995
No 89
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=97.41 E-value=0.00033 Score=77.52 Aligned_cols=96 Identities=23% Similarity=0.350 Sum_probs=67.4
Q ss_pred EEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Q 008100 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (577)
Q Consensus 97 ~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (577)
+++==+|-|||. ||||||++.++...+||. ..|.-++. +|+.. +......+.+.|.++|+-
T Consensus 30 v~tRFaPsPtG~-LHiG~ar~al~n~~~Ar~--~~G~~iLR---ieDTd-------------~~r~~~e~~~~I~~dL~w 90 (554)
T PRK05347 30 VHTRFPPEPNGY-LHIGHAKSICLNFGLAQD--YGGKCNLR---FDDTN-------------PEKEDQEYVDSIKEDVRW 90 (554)
T ss_pred eEEEeCCCCCCc-ccHHHHHHHHHHHHHHHH--hCCEEEEE---ECCCC-------------CCcCChHHHHHHHHHHHH
Confidence 445559999998 999999999999999984 34544433 33322 223456778999999999
Q ss_pred hCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeee
Q 008100 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (577)
Q Consensus 177 lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~ 214 (577)
||+..| +..+++++ |.........+|.++|++|..
T Consensus 91 LGi~~d-~~~~~qS~--r~~~~y~~a~~Li~~G~AY~c 125 (554)
T PRK05347 91 LGFDWS-GELRYASD--YFDQLYEYAVELIKKGKAYVD 125 (554)
T ss_pred cCCCCC-CCceeeec--CHHHHHHHHHHHHHcCCEeeC
Confidence 999543 34555443 334444556799999999973
No 90
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=97.40 E-value=4.4e-05 Score=87.64 Aligned_cols=19 Identities=37% Similarity=0.936 Sum_probs=17.0
Q ss_pred ccCcccccCcCc-cccccce
Q 008100 489 KLRDWLFARQRY-WGEPIPV 507 (577)
Q Consensus 489 ~~~DWcISRQR~-WG~PIPv 507 (577)
.++||||||||. ||+|||.
T Consensus 200 ~l~D~~ISR~~~~WGipvP~ 219 (648)
T PRK12267 200 GLEDLSISRTSFDWGIPVPF 219 (648)
T ss_pred CCCCcccCCCCCCcceECCC
Confidence 379999999985 9999996
No 91
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=97.36 E-value=0.00047 Score=75.96 Aligned_cols=89 Identities=24% Similarity=0.294 Sum_probs=65.7
Q ss_pred CCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCC
Q 008100 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (577)
Q Consensus 102 pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~ 181 (577)
.|-|||. |||||+++.++.-.+|| ...|.-++.+--+|. ......+.+.|.++|+-||+
T Consensus 7 APsPtG~-lHiG~~rtal~n~l~Ar--~~~G~~iLRieDtD~----------------~R~~~~~~~~i~~~L~wlGl-- 65 (470)
T TIGR00464 7 APSPTGY-LHIGGARTALFNYLFAK--HTGGEFILRIEDTDL----------------ERNIEEAEEAILEGLKWLGI-- 65 (470)
T ss_pred CCCCCCc-ccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCC----------------ccCChHHHHHHHHHHHHCCC--
Confidence 7999998 99999999999999998 345655544433332 22345678889999999999
Q ss_pred CCC-CceeCCChhhHHHHHHHHHHHHHCCceee
Q 008100 182 DWN-REISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (577)
Q Consensus 182 Dw~-~~~~T~d~~~~~~v~~~f~~L~~kGliy~ 213 (577)
+|| .+|+.++ +.+.-..+..+|.++|++|.
T Consensus 66 ~~de~~~~QS~--r~~~y~~~~~~L~~~g~aY~ 96 (470)
T TIGR00464 66 SWDEGPYYQSQ--RLDIYKKYAKELLEEGLAYR 96 (470)
T ss_pred CCCCCeeehhC--CHHHHHHHHHHHHHcCCEEe
Confidence 677 5565554 23344577889999999995
No 92
>PLN02859 glutamine-tRNA ligase
Probab=97.36 E-value=0.00052 Score=78.55 Aligned_cols=94 Identities=23% Similarity=0.358 Sum_probs=67.1
Q ss_pred EEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Q 008100 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (577)
Q Consensus 97 ~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (577)
+++==||-|||. ||||||++.++...+||.. .|.-++. +|+.. +......+.+.|.++++-
T Consensus 265 V~tRFaPsPtG~-LHiGharaallN~~~Ar~~--~G~~~LR---ieDTd-------------p~r~~~e~~~~I~edL~W 325 (788)
T PLN02859 265 VYTRFPPEPNGY-LHIGHAKAMFVDFGLAKER--GGCCYLR---FDDTN-------------PEAEKKEYIDHIEEIVEW 325 (788)
T ss_pred eEEEeCCCCCCc-ccHHHHHHHHHHHHHHHHh--CCEEEEE---ecCCC-------------CCccchHHHHHHHHHHHH
Confidence 344449999998 9999999999999999863 4544433 33322 233456778999999999
Q ss_pred hCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceee
Q 008100 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (577)
Q Consensus 177 lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~ 213 (577)
||+ +|+..++.++ |.........+|.++|++|.
T Consensus 326 LG~--~~d~~~~qSd--~f~~~Y~~A~~Li~~G~AY~ 358 (788)
T PLN02859 326 MGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 358 (788)
T ss_pred cCC--CCCCcccccH--hHHHHHHHHHHHHHcCCeEe
Confidence 996 6767665543 33334445667999999997
No 93
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.22 E-value=0.0011 Score=66.55 Aligned_cols=85 Identities=22% Similarity=0.291 Sum_probs=60.2
Q ss_pred CCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCC
Q 008100 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (577)
Q Consensus 102 pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~ 181 (577)
.|.|||. |||||+++.++.-+.+|- ..|. ++.=+|+.. +......+.+.+.++|..||+
T Consensus 7 APsPtG~-LHlG~~~~al~n~l~ar~--~~G~---~ilRieDtd-------------~~r~~~~~~~~i~~dL~wlGl-- 65 (239)
T cd00808 7 APSPTGF-LHIGGARTALFNYLFARK--HGGK---FILRIEDTD-------------QERSVPEAEEAILEALKWLGL-- 65 (239)
T ss_pred CCCCCCc-ccHHHHHHHHHHHHHHHH--cCCe---EEEEECcCC-------------CCCCchHHHHHHHHHHHHcCC--
Confidence 7999998 999999999999999883 3453 333344422 122344667889999999999
Q ss_pred CCCC---------ceeCCChhhHHHHHHHHHHHHHCC
Q 008100 182 DWNR---------EISTIEPAYYKWTQWIFLQLLKRG 209 (577)
Q Consensus 182 Dw~~---------~~~T~d~~~~~~v~~~f~~L~~kG 209 (577)
||+. .|..++ ..+.-..++.+|.++|
T Consensus 66 ~~d~~~~~~g~~~~~~QS~--r~~~y~~~~~~L~~~g 100 (239)
T cd00808 66 DWDEGPDVGGPYGPYRQSE--RLEIYRKYAEKLLEKG 100 (239)
T ss_pred CCCcCCccCCCCCCEeeeC--CHHHHHHHHHHHHHcC
Confidence 6767 555554 4444556688888888
No 94
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=97.19 E-value=0.001 Score=66.21 Aligned_cols=85 Identities=25% Similarity=0.346 Sum_probs=62.5
Q ss_pred CCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCC
Q 008100 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (577)
Q Consensus 102 pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~ 181 (577)
+|.|||. ||+||+++.++.-.+||-. .|.-++.+--+|. ......+.+.|.++|+.||+
T Consensus 7 APsPtG~-lHlG~~r~al~n~l~Ar~~--~G~~iLRieDtD~----------------~R~~~~~~~~I~~dL~wlGl-- 65 (230)
T cd00418 7 APSPTGY-LHIGHARTALFNFAFARKY--GGKFILRIEDTDP----------------ERSRPEYVESILEDLKWLGL-- 65 (230)
T ss_pred CCCCCCc-ccHHHHHHHHHHHHHHHHc--CCeEEEEeCcCCC----------------CCCChHHHHHHHHHHHHcCC--
Confidence 7999998 9999999999999999853 5655554433332 22345678899999999999
Q ss_pred CCCC-ceeCCChhhHHHHHHHHHHHHHCC
Q 008100 182 DWNR-EISTIEPAYYKWTQWIFLQLLKRG 209 (577)
Q Consensus 182 Dw~~-~~~T~d~~~~~~v~~~f~~L~~kG 209 (577)
+||. .|+.+ ++.+.-...+.+|.++|
T Consensus 66 ~wd~~~~~QS--~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 66 DWDEGPYRQS--DRFDLYRAYAEELIKKG 92 (230)
T ss_pred CCCCCeeehh--cCHHHHHHHHHHHHHcC
Confidence 5666 55443 44455566888999999
No 95
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=97.11 E-value=0.00015 Score=80.97 Aligned_cols=19 Identities=37% Similarity=0.739 Sum_probs=17.7
Q ss_pred ccCcccccC-cCccccccce
Q 008100 489 KLRDWLFAR-QRYWGEPIPV 507 (577)
Q Consensus 489 ~~~DWcISR-QR~WG~PIPv 507 (577)
+++|||||| |++||+|||.
T Consensus 197 ~~~D~~isR~~~~WGipiP~ 216 (511)
T PRK11893 197 GLKDLSISRTNFDWGIPVPG 216 (511)
T ss_pred CCCCcccCCCCCCCCccCCC
Confidence 478999999 9999999997
No 96
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=97.08 E-value=0.0013 Score=76.00 Aligned_cols=95 Identities=28% Similarity=0.412 Sum_probs=69.4
Q ss_pred EEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Q 008100 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (577)
Q Consensus 97 ~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (577)
+++=-+|-|||. ||||||++.++...+||- ..|.-++. +|+.. +......+.+.|.++|+-
T Consensus 32 v~tRFaPsPtG~-lHiGhar~alln~~~A~~--~~G~~~LR---~eDTd-------------~~r~~~e~~~~I~~dl~w 92 (771)
T PRK14703 32 VVTRFPPEPNGY-LHIGHAKSILLNFGIARD--YGGRCHLR---MDDTN-------------PETEDTEYVEAIKDDVRW 92 (771)
T ss_pred eEEEeCcCCCCc-ccHHHHHHHHHHHHHHHH--hCCEEEEE---eCCCC-------------CCcCChHHHHHHHHHHHH
Confidence 455559999998 999999999999999973 34543332 33332 223455778999999999
Q ss_pred hCCCCCCCC-ceeCCChhhHHHHHHHHHHHHHCCceeee
Q 008100 177 LGFSYDWNR-EISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (577)
Q Consensus 177 lGi~~Dw~~-~~~T~d~~~~~~v~~~f~~L~~kGliy~~ 214 (577)
||+ +|+. .|+.+ +|.+.......+|.++|++|..
T Consensus 93 LG~--~wd~~~~~qS--~~~~~y~~~a~~Li~~G~aY~c 127 (771)
T PRK14703 93 LGF--DWGEHLYYAS--DYFERMYAYAEQLIKMGLAYVD 127 (771)
T ss_pred cCC--CCCCCceEee--cCHHHHHHHHHHHHHcCCcccC
Confidence 999 5544 34443 5666677788999999999974
No 97
>PLN02627 glutamyl-tRNA synthetase
Probab=97.06 E-value=0.0014 Score=72.52 Aligned_cols=90 Identities=27% Similarity=0.304 Sum_probs=67.5
Q ss_pred CCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCC
Q 008100 101 MFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (577)
Q Consensus 101 ~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~ 180 (577)
=.|-|+|. |||||+++.++.-.+|| +..|.-++.+--+|. ......+.+.|.++|+-||+
T Consensus 50 FAPSPTG~-LHiG~aRtAL~n~l~Ar--~~gG~fiLRIEDTD~----------------~R~~~e~~~~I~~~L~WLGl- 109 (535)
T PLN02627 50 FAPSPTGN-LHVGGARTALFNYLFAR--SKGGKFVLRIEDTDL----------------ARSTKESEEAVLRDLKWLGL- 109 (535)
T ss_pred eCCCCCCC-ccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC----------------CCCChHHHHHHHHHHHHcCC-
Confidence 37999998 99999999999999998 456766665544443 22345678889999999998
Q ss_pred CCCCCc---------eeCCChhhHHHHHHHHHHHHHCCceee
Q 008100 181 YDWNRE---------ISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (577)
Q Consensus 181 ~Dw~~~---------~~T~d~~~~~~v~~~f~~L~~kGliy~ 213 (577)
|||.. |+-+ +..+.-..+..+|.++|++|.
T Consensus 110 -~wDegp~~gg~~gpy~QS--eR~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 110 -DWDEGPDVGGEYGPYRQS--ERNAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred -CCCcCcccCCCCCCeeee--ccHHHHHHHHHHHHHcCCeee
Confidence 77653 3333 334455678899999999995
No 98
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=97.01 E-value=0.0017 Score=71.65 Aligned_cols=90 Identities=27% Similarity=0.291 Sum_probs=66.7
Q ss_pred CCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCC
Q 008100 101 MFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (577)
Q Consensus 101 ~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~ 180 (577)
-.|-|||. |||||+++.++.-.+||- ..|.-++.+--+|. ......+.+.|.++|+-||+
T Consensus 9 fAPSPtG~-lHiG~~rtal~n~l~Ar~--~~G~fiLRieDtD~----------------~R~~~~~~~~i~~~L~wlGl- 68 (476)
T PRK01406 9 FAPSPTGY-LHIGGARTALFNWLFARH--HGGKFILRIEDTDQ----------------ERSTEEAEEAILEGLKWLGL- 68 (476)
T ss_pred eCCCCCCc-ccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCC----------------CCCChHHHHHHHHHHHHCCC-
Confidence 38999998 999999999999999884 35655554433332 22456678899999999999
Q ss_pred CCCCCc--------eeCCChhhHHHHHHHHHHHHHCCceee
Q 008100 181 YDWNRE--------ISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (577)
Q Consensus 181 ~Dw~~~--------~~T~d~~~~~~v~~~f~~L~~kGliy~ 213 (577)
+||.. |+.+ ++.+.-.....+|.++|++|.
T Consensus 69 -~~De~p~~~~~gpy~QS--~r~~~y~~~~~~L~~~g~aY~ 106 (476)
T PRK01406 69 -DWDEGPDGGPYGPYRQS--ERLDIYKEYAEQLLEEGKAYY 106 (476)
T ss_pred -CCCCCCccCCCCceehh--cCHHHHHHHHHHHHHcCCeee
Confidence 66654 4444 334556678899999999996
No 99
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.0042 Score=67.53 Aligned_cols=86 Identities=21% Similarity=0.215 Sum_probs=67.2
Q ss_pred EEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccCh--------HHHHHHHH-hCCC--------
Q 008100 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGL--------PAEQYAIE-TGTH-------- 158 (577)
Q Consensus 96 f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Gl--------pie~~a~~-~g~~-------- 158 (577)
.+++.+-=.|+|. +|||+++-.+.+|+++|-+|-+|+.|.+++=||++.- |-....++ .|..
T Consensus 20 ~~~v~tGisPSG~-~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521)
T COG1384 20 EYVVATGISPSGL-IHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521)
T ss_pred cEEEecCcCCCCC-cccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence 3555666789998 9999999999999999999999999999999999862 21111122 2321
Q ss_pred --chhhHHHHHHHHHHHHHHhCCCCC
Q 008100 159 --PKITTLRNINRFRTQLKSLGFSYD 182 (577)
Q Consensus 159 --~~~~~~~~~~~~~~~l~~lGi~~D 182 (577)
...+++.+...|.+.|..+||-+.
T Consensus 99 G~~~Sya~hf~~~f~~~l~~~Gi~~E 124 (521)
T COG1384 99 GCCDSYAEHFLRPFEEFLDEFGIEVE 124 (521)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceE
Confidence 345788889999999999999765
No 100
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=96.90 E-value=0.00049 Score=72.34 Aligned_cols=85 Identities=24% Similarity=0.222 Sum_probs=56.9
Q ss_pred EEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccCh--------HHHHHHHH-hCCC--------
Q 008100 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGL--------PAEQYAIE-TGTH-------- 158 (577)
Q Consensus 96 f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Gl--------pie~~a~~-~g~~-------- 158 (577)
.+++.+-=.|+|. +|||+++..+..|+++|-++.+|.+|.++..||+..- |-. ...+ .|..
T Consensus 24 ~~v~~sG~sPSG~-~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~-~~~~ylg~Plt~VPdP~ 101 (360)
T PF01921_consen 24 PYVFASGISPSGL-PHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNP-ELEKYLGKPLTRVPDPF 101 (360)
T ss_dssp EEEEEEEE--SS----HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC--CCCCTTSBTTTSB-TT
T ss_pred cEEEecCCCCCCC-cccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChH-HHHHhcCCccccCCCCC
Confidence 4555556789998 9999999999999999999999999999999999862 111 0001 1211
Q ss_pred --chhhHHHHHHHHHHHHHHhCCCCC
Q 008100 159 --PKITTLRNINRFRTQLKSLGFSYD 182 (577)
Q Consensus 159 --~~~~~~~~~~~~~~~l~~lGi~~D 182 (577)
...+++.+...+.+.|..+||.++
T Consensus 102 G~~~SyaeH~~~~~~~~L~~~gie~e 127 (360)
T PF01921_consen 102 GCHESYAEHFNAPFEEFLDEFGIEYE 127 (360)
T ss_dssp SSSSCHHHHHHHHHHHHHHTTT---E
T ss_pred CCCccHHHHHHHHHHHHHHHcCCceE
Confidence 145689999999999999999775
No 101
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.0064 Score=65.87 Aligned_cols=99 Identities=24% Similarity=0.296 Sum_probs=74.2
Q ss_pred EEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Q 008100 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (577)
Q Consensus 97 ~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (577)
+++-=||=|+|. ||||||...++ .-|.... |+=..++-||+.- |....+++.+.+.+++..
T Consensus 201 Vv~RFPPEpSGy-LHIGHAKAALL----NqYfa~~-~~G~LIvRFDDTN-------------PaKE~~eFe~~IleDl~~ 261 (712)
T KOG1147|consen 201 VVTRFPPEPSGY-LHIGHAKAALL----NQYFAQA-YQGKLIVRFDDTN-------------PAKENEEFEDVILEDLSL 261 (712)
T ss_pred eEEecCCCCCce-eehhhHHHHHH----HHHHHHh-cCceEEEEecCCC-------------cchhhHHHHHHHHHHHHH
Confidence 455568999998 99999988755 4444332 2233455666643 333356677889999999
Q ss_pred hCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCc
Q 008100 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPV 218 (577)
Q Consensus 177 lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v 218 (577)
|||..| ..|....|-..+...-.+|.+.|.+|-++.|.
T Consensus 262 LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp~ 299 (712)
T KOG1147|consen 262 LGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPT 299 (712)
T ss_pred hCcCcc----eeeechhhHHHHHHHHHHHHhcCcccccCCcH
Confidence 999988 55777788888999999999999999988774
No 102
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=96.46 E-value=0.00088 Score=75.20 Aligned_cols=19 Identities=37% Similarity=0.784 Sum_probs=18.2
Q ss_pred cCcccccCcCc-cccccceE
Q 008100 490 LRDWLFARQRY-WGEPIPVV 508 (577)
Q Consensus 490 ~~DWcISRQR~-WG~PIPv~ 508 (577)
++|||||||++ ||+|||.|
T Consensus 224 l~d~~iSR~~~~WGipvP~~ 243 (530)
T TIGR00398 224 LKDLAITRDLVYWGIPVPND 243 (530)
T ss_pred CCCccccCcCCCCCeeCCCC
Confidence 78999999999 99999987
No 103
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.45 E-value=0.08 Score=56.26 Aligned_cols=122 Identities=22% Similarity=0.258 Sum_probs=82.4
Q ss_pred CCCCCCCC-CCcchhhHhHHHHHHHHHHHHcCCcccCcccccc----cChHHHHHHHHh---------------------
Q 008100 102 FPYPSGAG-LHVGHPLGYTATDILARLKRMQGYNVLHPMGWDA----FGLPAEQYAIET--------------------- 155 (577)
Q Consensus 102 pPypng~~-LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~----~Glpie~~a~~~--------------------- 155 (577)
+-.||-.. +|+||.|..+|+|.++|.+...|++|+.+--.-+ +|+-|+..-.+-
T Consensus 194 FSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDLQvFYkeSK 273 (656)
T KOG4426|consen 194 FSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDLQVFYKESK 273 (656)
T ss_pred cCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhHHHHHHHHH
Confidence 56677643 9999999999999999999999999986543333 333333221110
Q ss_pred ---------------------CCCch---h---hHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHC
Q 008100 156 ---------------------GTHPK---I---TTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKR 208 (577)
Q Consensus 156 ---------------------g~~~~---~---~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~k 208 (577)
|..|. . .++-..+.+..-.++|.|++- ---+..|...+..+.+.|..+
T Consensus 274 krFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~-----e~GESFYq~~m~~vveel~~k 348 (656)
T KOG4426|consen 274 KRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLK-----ERGESFYQDRMAEVVEELKSK 348 (656)
T ss_pred hccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHh-----hcchhhhhhHHHHHHHHHhcC
Confidence 00010 0 011123445667788888765 123457888899999999999
Q ss_pred Cceeeecc-CcccCCCCCccC
Q 008100 209 GLAYQAEV-PVNWCPALGTVL 228 (577)
Q Consensus 209 Gliy~~~~-~v~wc~~~~t~L 228 (577)
|++...++ .+-|-+.|.-+|
T Consensus 349 glvee~~Gr~i~f~~g~~IPL 369 (656)
T KOG4426|consen 349 GLVEEDDGRRIMFPEGCDIPL 369 (656)
T ss_pred CceeecCCceEeccCCCCcce
Confidence 99998864 588888888766
No 104
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=95.23 E-value=0.0092 Score=62.47 Aligned_cols=13 Identities=69% Similarity=1.472 Sum_probs=12.6
Q ss_pred ccCcCccccccce
Q 008100 495 FARQRYWGEPIPV 507 (577)
Q Consensus 495 ISRQR~WG~PIPv 507 (577)
||||+.||+|+|.
T Consensus 169 isR~~~wGipvP~ 181 (314)
T cd00812 169 CSRQRYWGTPIPW 181 (314)
T ss_pred eeeecCCcCCcCc
Confidence 9999999999996
No 105
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=94.88 E-value=0.01 Score=62.33 Aligned_cols=19 Identities=37% Similarity=0.840 Sum_probs=17.7
Q ss_pred ccCcccccCcC-ccccccce
Q 008100 489 KLRDWLFARQR-YWGEPIPV 507 (577)
Q Consensus 489 ~~~DWcISRQR-~WG~PIPv 507 (577)
.++|||||||+ .||+|||.
T Consensus 178 ~l~d~~isR~~~~WGipvp~ 197 (319)
T cd00814 178 GLKDLSITRDLFDWGIPVPL 197 (319)
T ss_pred CCcccCCCccCcccCeeCCC
Confidence 47899999999 99999997
No 106
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=94.35 E-value=0.017 Score=66.75 Aligned_cols=18 Identities=39% Similarity=0.763 Sum_probs=16.9
Q ss_pred ccCcccccCcCcc-ccccc
Q 008100 489 KLRDWLFARQRYW-GEPIP 506 (577)
Q Consensus 489 ~~~DWcISRQR~W-G~PIP 506 (577)
.++|||||||+.| |+|+|
T Consensus 223 ~l~d~~ISR~~~W~GipvP 241 (673)
T PRK00133 223 GLQDWDISRDAPYFGFEIP 241 (673)
T ss_pred CCcccceeeeCCccceECC
Confidence 4789999999999 99999
No 107
>PLN02882 aminoacyl-tRNA ligase
Probab=94.29 E-value=0.046 Score=66.66 Aligned_cols=80 Identities=23% Similarity=0.413 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCC
Q 008100 194 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW 273 (577)
Q Consensus 194 ~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~ 273 (577)
..++-..+++.|.++|++.......+ .++.|++|+.|++.+.++|||++++.+++++++..+.+.|
T Consensus 382 v~eA~~~Ii~~Lk~~g~L~~~~~~~H--------------syp~cwR~~tpli~~a~~qWFi~~~~~k~~~l~~~~~i~w 447 (1159)
T PLN02882 382 VKDADKDIIAAIKAKGRLVKSGSITH--------------SYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENNKQTYW 447 (1159)
T ss_pred HHHhhHHHHHHHHHCCCccceeeeec--------------CCCEeeCCCCEEEEEecceeEEEcHHHHHHHHHhhCCcEE
Confidence 33445678888999999876544332 1467899999999999999999999999999998888887
Q ss_pred -CHHHH-HHHHHhhhc
Q 008100 274 -PESVK-EMQRNWIGR 287 (577)
Q Consensus 274 -p~~~~-~~~~~~i~~ 287 (577)
|+.++ +...+||..
T Consensus 448 ~P~~~~~~r~~~wl~~ 463 (1159)
T PLN02882 448 VPDYVKEKRFHNWLEN 463 (1159)
T ss_pred ECCcchhhHHHHHHhc
Confidence 99994 788899844
No 108
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=94.11 E-value=0.06 Score=64.85 Aligned_cols=79 Identities=24% Similarity=0.433 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCC-
Q 008100 194 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD- 272 (577)
Q Consensus 194 ~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~- 272 (577)
..++-..+++.|.++|++.+.....+ .++.|++||.+++.+.++|||++++++++++++.++...
T Consensus 361 v~eA~~~Ii~~L~~~g~l~~~~~~~h--------------~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~~~i~~ 426 (975)
T PRK06039 361 VKDADKEIIRDLKERGLLFKAETYEH--------------SYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQKINW 426 (975)
T ss_pred HHHhhHHHHHHHHhCCCEeeeeeecC--------------CCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhhCCeEE
Confidence 34556778899999999887654322 246788888899999999999999999999999998875
Q ss_pred CCHHHHH-HHHHhhh
Q 008100 273 WPESVKE-MQRNWIG 286 (577)
Q Consensus 273 ~p~~~~~-~~~~~i~ 286 (577)
.|+.+++ ...+||.
T Consensus 427 ~P~~~~~~~~~~wl~ 441 (975)
T PRK06039 427 YPEHIKDGRFGKWLE 441 (975)
T ss_pred ECcccchhhHHHHHh
Confidence 6999988 8889984
No 109
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.91 E-value=0.13 Score=56.60 Aligned_cols=94 Identities=23% Similarity=0.342 Sum_probs=63.4
Q ss_pred EEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Q 008100 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (577)
Q Consensus 97 ~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (577)
+++-=||=|||- ||||||-..-+-==+|++ +.|.. |.- +|+ ..|+...+++.+.|++...-
T Consensus 249 V~TRFPPEPNG~-LHIGHaKAInvNFgyAk~--~~G~c--yLR-fDD-------------TNPEkEee~yf~sI~e~V~W 309 (764)
T KOG1148|consen 249 VVTRFPPEPNGI-LHIGHAKAINVNFGYAKA--HGGVC--YLR-FDD-------------TNPEKEEEEYFESIKEMVAW 309 (764)
T ss_pred eEEeCCCCCCce-eeecchhheeechhhhhh--hCCeE--EEe-cCC-------------CCcchhhHHHHHHHHHHHHH
Confidence 455569999998 999998653221111221 12211 111 222 23555567788888888888
Q ss_pred hCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceee
Q 008100 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (577)
Q Consensus 177 lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~ 213 (577)
||. +.+-.|.+.+|-......-.+|+++|++|-
T Consensus 310 LG~----~P~kvTysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 310 LGF----EPYKVTYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred hCC----CceeeecchhHHHHHHHHHHHHHhcCceeE
Confidence 886 366789999999888888899999999985
No 110
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=93.68 E-value=0.1 Score=63.29 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCC--C
Q 008100 194 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD--L 271 (577)
Q Consensus 194 ~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~--~ 271 (577)
..+.-..++..|.++|++.+.... +...++|++|+.+++.+..+||||+++.+++++++.+++ .
T Consensus 330 ~~ear~~Ii~~L~~~g~l~~~~~~--------------~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~ 395 (1052)
T PRK14900 330 RFEARKEVKRLLAEQGLDRGAKPH--------------VLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRT 395 (1052)
T ss_pred HHHHHHHHHHHHHhCCCeecceee--------------eccCceeCCCCceEEEEeccceeeehHHHHHHHHHHHhcCCc
Confidence 345566788899999998775332 222467889999999999999999999999999999964 4
Q ss_pred -CCCHHHHHHHHHhhhc
Q 008100 272 -DWPESVKEMQRNWIGR 287 (577)
Q Consensus 272 -~~p~~~~~~~~~~i~~ 287 (577)
.+|+..++...+||..
T Consensus 396 ~~~P~~~~~~~~~wl~~ 412 (1052)
T PRK14900 396 RFIPEQWTNTYMAWMRN 412 (1052)
T ss_pred EEEChHHHHHHHHHHhc
Confidence 3999999999999953
No 111
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=93.53 E-value=0.12 Score=61.08 Aligned_cols=78 Identities=24% Similarity=0.376 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCC-C
Q 008100 195 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-W 273 (577)
Q Consensus 195 ~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~-~ 273 (577)
.+.-..+++.|.++|++.......+ ..++|++||.+++.+.++||||+++.+++++.+.++... +
T Consensus 314 ~~a~~~i~~~L~~~g~~~~~~~~~~--------------~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~~~~~~~ 379 (800)
T PRK13208 314 EEARKKIVEDLKSGGLLGKQEPIKH--------------NVKFCERCDTPLEILVTRQWFIKVLDLKEELLERGKEINWY 379 (800)
T ss_pred HHHHHHHHHHHHhCCCeeceeeeec--------------cCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhhcCcEEE
Confidence 4556778889999998765433221 124567788899999999999999999999999998764 8
Q ss_pred CHHHHHHHHHhhh
Q 008100 274 PESVKEMQRNWIG 286 (577)
Q Consensus 274 p~~~~~~~~~~i~ 286 (577)
|+..++...+||.
T Consensus 380 P~~~~~~~~~~l~ 392 (800)
T PRK13208 380 PEHMRVRLENWIE 392 (800)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999995
No 112
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=93.48 E-value=0.11 Score=61.82 Aligned_cols=77 Identities=27% Similarity=0.422 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCC-CC
Q 008100 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-WP 274 (577)
Q Consensus 196 ~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~-~p 274 (577)
+.-..+++.|.++|++.......+ .++.|++||.+++.+..+|||++++.+++.+++.++... +|
T Consensus 381 ~a~~~ii~~L~~~g~l~~~~~~~h--------------~~p~~~R~~~~v~~~~~~QWFi~~~~~k~~~l~~~~~i~~~P 446 (861)
T TIGR00392 381 KANKIIIEQLKDKGLLLKAEKITH--------------SYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQIKKVNWVP 446 (861)
T ss_pred HhHHHHHHHHHhCCCeeeeeeEec--------------CCCccCCCCCEEEEecCccccEEcHHHHHHHHHHhCCcEEEC
Confidence 455678888999998765543332 135688999999999999999999999999999998875 89
Q ss_pred HHHHHHHHHhhh
Q 008100 275 ESVKEMQRNWIG 286 (577)
Q Consensus 275 ~~~~~~~~~~i~ 286 (577)
+..++...+||.
T Consensus 447 ~~~~~~~~~~l~ 458 (861)
T TIGR00392 447 EWGEGRFGNWLE 458 (861)
T ss_pred chHHHHHHHHHh
Confidence 999999999985
No 113
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=93.45 E-value=0.099 Score=62.27 Aligned_cols=78 Identities=23% Similarity=0.394 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCC--CC
Q 008100 195 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD--LD 272 (577)
Q Consensus 195 ~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~--~~ 272 (577)
.++-..++..|.++|++.+.... +...+.|++||.+++.+..+||||+++.+++++.+.+++ +.
T Consensus 314 ~~ar~~i~~~L~~~g~l~~~~~~--------------~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~ 379 (861)
T TIGR00422 314 FEARKKIVEDLKEEGLLVKIEPH--------------THNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIK 379 (861)
T ss_pred HHhHHHHHHHHHhCCCeeeeeee--------------eccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCeE
Confidence 45567788999999998765432 223456788889999999999999999999999999873 43
Q ss_pred -CCHHHHHHHHHhhh
Q 008100 273 -WPESVKEMQRNWIG 286 (577)
Q Consensus 273 -~p~~~~~~~~~~i~ 286 (577)
+|++.++...+||.
T Consensus 380 ~~P~~~~~~~~~wl~ 394 (861)
T TIGR00422 380 FVPKRMEKRYLNWLR 394 (861)
T ss_pred EEChHHHHHHHHHHh
Confidence 79999999999995
No 114
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.84 E-value=0.99 Score=49.28 Aligned_cols=146 Identities=21% Similarity=0.219 Sum_probs=91.6
Q ss_pred hhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCC-CCcchhhHhHHHHHHHHHHHHcCCcccCc--------
Q 008100 68 EIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAG-LHVGHPLGYTATDILARLKRMQGYNVLHP-------- 138 (577)
Q Consensus 68 ~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~-LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~-------- 138 (577)
-++.-.+..|++...|... + ..+.++.+|= +--||-.. .|+||.|..+++-.++...+..|++|..+
T Consensus 86 ~~k~~l~~i~~~~~~~g~~-~-~~~~k~iVVe--fSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGk 161 (567)
T KOG1195|consen 86 LIKSVLPIIEEQREKYGKN-E-LGSGKKIVVE--FSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGK 161 (567)
T ss_pred HHHHHHHHHHHHhcccCcc-c-cccCceEEEE--ecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHH
Confidence 4566677888888888755 1 2223445554 44445432 99999999999999999999999999643
Q ss_pred ------ccccccCh-------HHHHH------H---HHhCCCc----hhh------------------HHHHHHHHHHHH
Q 008100 139 ------MGWDAFGL-------PAEQY------A---IETGTHP----KIT------------------TLRNINRFRTQL 174 (577)
Q Consensus 139 ------~G~D~~Gl-------pie~~------a---~~~g~~~----~~~------------------~~~~~~~~~~~l 174 (577)
-||.-.|. ||.+. + .+..... ++. .+-.++...+..
T Consensus 162 QFgll~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y 241 (567)
T KOG1195|consen 162 QFGLLALGFQLYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTY 241 (567)
T ss_pred HhhHHhccHHhhCchhhhccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHH
Confidence 33444443 33211 0 0000000 000 011244556778
Q ss_pred HHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCccc
Q 008100 175 KSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNW 220 (577)
Q Consensus 175 ~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w 220 (577)
+|||+.+| .|.--+..+.+..+.+...+.++|++-..++....
T Consensus 242 ~Rl~v~FD---~y~gESqv~~e~~~~~~d~~rs~~l~~e~dG~~vi 284 (567)
T KOG1195|consen 242 NRLNVKFD---EYSGESQVSNEKMQEALDLLRSANLTEEIDGTIVI 284 (567)
T ss_pred HHhceeee---eccchHHHHHHHHHHHHHHHHhcCCcccCCCcEEE
Confidence 99999999 33333457788889999999999877666665543
No 115
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=92.65 E-value=0.16 Score=62.22 Aligned_cols=79 Identities=15% Similarity=0.291 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCC-C
Q 008100 195 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-W 273 (577)
Q Consensus 195 ~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~-~ 273 (577)
.++-..+++.|.++|++.+.....+ .++.|++|+.|++.+..+|||++++..++++.+..+... .
T Consensus 487 ~dA~~~Ii~~Lk~~g~L~~~e~~~H--------------~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~~~i~w~ 552 (1205)
T PTZ00427 487 KEADNVIKKKLKNENRLLSNNTIVH--------------SYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNNETTYWI 552 (1205)
T ss_pred HHhHHHHHHHHHhCCCeeeeeeeec--------------cCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHcCCccEEe
Confidence 3445668888999999887654332 256788999999999999999999999999998887776 5
Q ss_pred CHHH-HHHHHHhhhc
Q 008100 274 PESV-KEMQRNWIGR 287 (577)
Q Consensus 274 p~~~-~~~~~~~i~~ 287 (577)
|+.+ .+...+||..
T Consensus 553 P~~~~~~r~~~wl~n 567 (1205)
T PTZ00427 553 PAHIKEKKFHNWIKD 567 (1205)
T ss_pred CchhhHhHHHHHHhc
Confidence 8888 5788899843
No 116
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=92.33 E-value=0.21 Score=59.65 Aligned_cols=79 Identities=22% Similarity=0.326 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCC--C-
Q 008100 195 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD--L- 271 (577)
Q Consensus 195 ~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~--~- 271 (577)
.+.-..+...|.++|++...... +...+.|++||.+++.+..+|||++++.+++++.+.+++ +
T Consensus 316 ~~ar~~i~~~L~~~g~l~~~~~~--------------~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i~ 381 (874)
T PRK05729 316 FEARKAIVADLEELGLLVKIEPH--------------THSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEIK 381 (874)
T ss_pred HHHHHHHHHHHHhCCCeeeeEEe--------------eccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHHhcCCcE
Confidence 34456788899999998665432 223456788888999999999999999999999999863 3
Q ss_pred CCCHHHHHHHHHhhhc
Q 008100 272 DWPESVKEMQRNWIGR 287 (577)
Q Consensus 272 ~~p~~~~~~~~~~i~~ 287 (577)
.+|+..++...+||..
T Consensus 382 ~~P~~~~~~~~~wl~~ 397 (874)
T PRK05729 382 FVPERWEKTYFHWMEN 397 (874)
T ss_pred EEChHHHHHHHHHHhc
Confidence 4999999999999953
No 117
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.21 E-value=0.29 Score=57.79 Aligned_cols=77 Identities=18% Similarity=0.294 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCC-CC
Q 008100 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-WP 274 (577)
Q Consensus 196 ~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~-~p 274 (577)
++-..++..|.++|.+....+..+ .++.|+||++|++.|.++|||.+++..++++++.++... .|
T Consensus 375 dAn~~Ii~~Lk~~g~Ll~~e~i~H--------------sYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~~v~w~P 440 (933)
T COG0060 375 DANKKIIEDLKEKGNLLKSEKIEH--------------SYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVP 440 (933)
T ss_pred cCCHHHHHHHHhCCceeeeeeEEe--------------CCCcccCCCCeeEEeecchheeEHHHHHHHHHHHHhcceEEC
Confidence 555678888988888776655443 266789999999999999999999999999998888776 68
Q ss_pred HHHHHHHHHhhh
Q 008100 275 ESVKEMQRNWIG 286 (577)
Q Consensus 275 ~~~~~~~~~~i~ 286 (577)
+..+....+||.
T Consensus 441 ~~~~~R~~~mve 452 (933)
T COG0060 441 DWGKNRFGNMVE 452 (933)
T ss_pred hhHHHHHHHHHc
Confidence 888888888883
No 118
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=91.15 E-value=0.32 Score=58.25 Aligned_cols=79 Identities=18% Similarity=0.265 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhh--hhHHHhhccCCC
Q 008100 194 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITE--YADRLLDDLDDL 271 (577)
Q Consensus 194 ~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~--y~~~l~~~l~~~ 271 (577)
..+.-..+++.|.++|++.......+ .++.|+||+.+++.+.++|||++++. +++.+++.++.+
T Consensus 368 v~ea~~~Ii~~L~~~g~l~~~~~~~h--------------~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~~v 433 (912)
T PRK05743 368 VFKANPKIIEKLEEKGALLKEEKITH--------------SYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKV 433 (912)
T ss_pred HHHhHHHHHHHHHhCCCeeeeeeeec--------------cCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHHccc
Confidence 34556678888999998766554322 24668899999999999999999998 999999999877
Q ss_pred C-CCHHHHHHHHHhhh
Q 008100 272 D-WPESVKEMQRNWIG 286 (577)
Q Consensus 272 ~-~p~~~~~~~~~~i~ 286 (577)
. .|+..++...+||.
T Consensus 434 ~~~P~~~~~r~~~~i~ 449 (912)
T PRK05743 434 KWIPAWGKNRIESMVE 449 (912)
T ss_pred EEEChHHHHHHHHHHh
Confidence 4 69999999999974
No 119
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=90.11 E-value=1.6 Score=52.61 Aligned_cols=161 Identities=19% Similarity=0.200 Sum_probs=92.7
Q ss_pred CCC-CCc--chhhH--hHHHHHHHHHHHHc-------CCcccCcccccccC-hHHHHHHHHhCCCchhhHHHHHH----H
Q 008100 107 GAG-LHV--GHPLG--YTATDILARLKRMQ-------GYNVLHPMGWDAFG-LPAEQYAIETGTHPKITTLRNIN----R 169 (577)
Q Consensus 107 g~~-LHi--GHa~~--~v~~Dvi~Ry~rm~-------G~~V~~~~G~D~~G-lpie~~a~~~g~~~~~~~~~~~~----~ 169 (577)
|+| .|. +|+-. .++.|.-.|. ..- .....-+...|..| ++......+.|+..+....+--+ .
T Consensus 301 GTGvV~~~Pah~p~Dy~~~~~l~~~~-~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~ 379 (938)
T TIGR00395 301 GTGVVMSVPAHAPDDYIALEDLLHDP-EYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKIL 379 (938)
T ss_pred CcceEEeCCCCCHHHHHHHHHhhhcc-hhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHH
Confidence 444 566 67766 3345544331 112 23334444566677 66666666777644322111111 1
Q ss_pred HHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEE-
Q 008100 170 FRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRK- 248 (577)
Q Consensus 170 ~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~- 248 (577)
+++.| .-|+..+=-..|.= ....+.-..+.+.|.++|++.+-..+. ..+.+.+||.+++.+
T Consensus 380 y~~~f-~~G~m~~~~~~~~G--~~v~ear~~i~~~L~~~g~~~~~~~~~---------------~~~v~~R~g~~~vv~~ 441 (938)
T TIGR00395 380 YKEEY-HTGVMIYNIPPYKG--MKVSEAKEKVKADLIDAGLADVMYEFS---------------ESPVICRCGTDCIVKV 441 (938)
T ss_pred hhhhc-cCceeccCCcccCC--cCHHHhHHHHHHHHHHCCCceEeeecC---------------CCCcEecCCCeEEEec
Confidence 11111 12432220001111 233344566788899999987654331 123345788887776
Q ss_pred ecccchhhHh--hhhHHHhhccCCCC-CCHHHHHHHHHhhh
Q 008100 249 PMRQWMLKIT--EYADRLLDDLDDLD-WPESVKEMQRNWIG 286 (577)
Q Consensus 249 ~~~~~~~~l~--~y~~~l~~~l~~~~-~p~~~~~~~~~~i~ 286 (577)
...|||++++ .+++.+.+.++... +|+..++...+||.
T Consensus 442 ~~~QWFi~~~~~~~k~~~~~~l~~~~~~P~~~~~~~~~~l~ 482 (938)
T TIGR00395 442 VEDQWFVKYSDESWKELAHECLEGMRIIPEEVKNAFEGKID 482 (938)
T ss_pred cCCCCeEEcCcHHHHHHHHHHHhcCEEeCHHHHHHHHHHHh
Confidence 8999999999 59999999998764 89999999999884
No 120
>PLN02943 aminoacyl-tRNA ligase
Probab=89.08 E-value=0.68 Score=55.79 Aligned_cols=77 Identities=22% Similarity=0.428 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCC--C-C
Q 008100 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD--L-D 272 (577)
Q Consensus 196 ~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~--~-~ 272 (577)
+.-..+...|.++|++...... +...++|++|+.+++.+..+|||++++.+++++.+.+++ + .
T Consensus 367 ear~~iv~~L~~~g~l~~~e~~--------------~~~~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v~~~~i~~ 432 (958)
T PLN02943 367 EAREKLWSDLEETGLAVKKEPH--------------TLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGELTI 432 (958)
T ss_pred HHHHHHHHHHHHCCCeeeeeee--------------ecCCCeeCCCCcEeEEEeccceeEEHHHHHHHHHHHHhcCCcEE
Confidence 4445677889999998654322 223567889999999999999999999999999998863 3 3
Q ss_pred CCHHHHHHHHHhhh
Q 008100 273 WPESVKEMQRNWIG 286 (577)
Q Consensus 273 ~p~~~~~~~~~~i~ 286 (577)
+|+..++...+||.
T Consensus 433 ~P~~~~~~~~~wl~ 446 (958)
T PLN02943 433 IPERFEKIYNHWLS 446 (958)
T ss_pred EChHHHHHHHHHHh
Confidence 99999999999984
No 121
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=88.06 E-value=0.86 Score=55.25 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCC--C
Q 008100 194 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD--L 271 (577)
Q Consensus 194 ~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~--~ 271 (577)
..+.-..+...|.++|++.+.... +-..+.|++||.+++.+..+|||++++.+++++.+.+++ +
T Consensus 359 ~~~ar~~ii~~L~~~g~l~~~~~~--------------~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~i 424 (995)
T PTZ00419 359 RFDCRRKIEEELKEMGLLRDKVPN--------------PMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGEL 424 (995)
T ss_pred HHHHHHHHHHHHHhcCCEEeeEEe--------------ecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCCe
Confidence 344556788889999998765432 222467888999999999999999999999999999863 3
Q ss_pred -CCCHHHHHHHHHhhhc
Q 008100 272 -DWPESVKEMQRNWIGR 287 (577)
Q Consensus 272 -~~p~~~~~~~~~~i~~ 287 (577)
..|+..++...+||..
T Consensus 425 ~~~P~~~~~~~~~wl~~ 441 (995)
T PTZ00419 425 KIIPSSHENVWYHWLEN 441 (995)
T ss_pred EEEChHHHHHHHHHHhc
Confidence 4899999999999954
No 122
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=87.57 E-value=0.74 Score=55.50 Aligned_cols=78 Identities=22% Similarity=0.263 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhh-------hhHHHhhc
Q 008100 195 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITE-------YADRLLDD 267 (577)
Q Consensus 195 ~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~-------y~~~l~~~ 267 (577)
.+.-..+++.|.++|++.......+ .++.|+||+.+++.+..+|||+++.. .++..++.
T Consensus 400 ~ea~~~Ii~~L~~~g~l~~~~~~~h--------------~yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~al~~ 465 (961)
T PRK13804 400 GDANKAVIEKLIEAGLLLARGRLKH--------------SYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALDA 465 (961)
T ss_pred hhhhHHHHHHHHhCCCcccccceec--------------CCCccCCCCCeEEEeccccccEEcCCcccchHHHHHHHHHH
Confidence 3556678888999988775544321 24678899999999999999999998 89999999
Q ss_pred cCCCC-CCHHHHHHHHHhhh
Q 008100 268 LDDLD-WPESVKEMQRNWIG 286 (577)
Q Consensus 268 l~~~~-~p~~~~~~~~~~i~ 286 (577)
++.+. .|+..++...+||.
T Consensus 466 i~~v~~~P~~~~~r~~~~i~ 485 (961)
T PRK13804 466 IDKTRFVPAAGQNRLYNMIE 485 (961)
T ss_pred HhccEEECHHHHHHHHHHHh
Confidence 98876 69999999999995
No 123
>PLN02843 isoleucyl-tRNA synthetase
Probab=87.16 E-value=0.9 Score=54.83 Aligned_cols=77 Identities=17% Similarity=0.190 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCC-CCH
Q 008100 197 WTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-WPE 275 (577)
Q Consensus 197 ~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~-~p~ 275 (577)
.-..++..|.++|++....... -.++.|+||+.+++.+..+|||+++..+++++++.++.+. .|+
T Consensus 388 a~~~Ii~~L~~~g~l~~~e~~~--------------H~yp~cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~~~v~~~P~ 453 (974)
T PLN02843 388 GNAAVVEALDEAGSLLMEEAYG--------------HKYPYDWRTKKPTIFRATEQWFASVEGFRQAALDAIDKVKWIPA 453 (974)
T ss_pred chHHHHHHHHHCCCeeeeeeec--------------CCCCccCCCCCeEEEEecCceeEeCHHHHHHHHHHHhccEEECh
Confidence 4467888899999865544322 1256789999999999999999999999999999998875 799
Q ss_pred HHHHHHHHhhhc
Q 008100 276 SVKEMQRNWIGR 287 (577)
Q Consensus 276 ~~~~~~~~~i~~ 287 (577)
..++...+||..
T Consensus 454 ~~~~r~~~~i~~ 465 (974)
T PLN02843 454 QGENRIRAMVSG 465 (974)
T ss_pred HHHHHHHHHHhc
Confidence 889999999843
No 124
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=85.47 E-value=0.63 Score=53.23 Aligned_cols=80 Identities=26% Similarity=0.502 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCC-
Q 008100 194 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD- 272 (577)
Q Consensus 194 ~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~- 272 (577)
..++-..+++.|.++|++...... +-..+.|++||.+++.+-.+|||+++.+.++++.+.++.+.
T Consensus 333 v~~ar~~ii~~L~~~g~l~~~~~~--------------~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~~i~~ 398 (601)
T PF00133_consen 333 VFEAREKIIEDLKEKGLLLKIEEI--------------EHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALEKIKF 398 (601)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEE--------------EEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHHTSEE
T ss_pred eeeccHHHHHHHHHhhhhcccccc--------------ccccceecCCCCEEEecccceeEEecHHhHHHHHhhcccceE
Confidence 356677889999999997654321 11234577888899999999999999999999999998875
Q ss_pred CCHHHHHHHHHhhhc
Q 008100 273 WPESVKEMQRNWIGR 287 (577)
Q Consensus 273 ~p~~~~~~~~~~i~~ 287 (577)
.|+..++...+||..
T Consensus 399 ~P~~~~~~~~~~i~~ 413 (601)
T PF00133_consen 399 YPESYRKRFENWIDN 413 (601)
T ss_dssp SSSTCHHHHHHHHHT
T ss_pred Ecccchhhhhhhccc
Confidence 799999999999854
No 125
>PLN02486 aminoacyl-tRNA ligase
Probab=84.66 E-value=5.9 Score=42.70 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=50.7
Q ss_pred CCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHH
Q 008100 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR 171 (577)
Q Consensus 92 ~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (577)
.+++|+++.|.= |+|..+||||... ...+..+++..|..+....+ |. +....+ +. ..+.+.++.....
T Consensus 70 ~~~~~~vYtG~~-PSg~~lHlGHlv~---~~~~~~lQ~~~~~~~~I~ia-D~-----e~~~~~-~~-~~e~i~~~~~en~ 137 (383)
T PLN02486 70 KGEKFYLYTGRG-PSSEALHLGHLIP---FMFTKYLQDAFKVPLVIQLT-DD-----EKFLWK-NL-SVEESQRLARENA 137 (383)
T ss_pred cCCCeEEEeCCC-CCCccccHHHHHH---HHHHHHHHHhCCCeEEEEec-CH-----HHHhhc-CC-CHHHHHHHHHHHH
Confidence 345688887753 4552299999544 44455555565766655533 43 333222 22 3344556666677
Q ss_pred HHHHHhCCCCCCCCceeCCChhhH
Q 008100 172 TQLKSLGFSYDWNREISTIEPAYY 195 (577)
Q Consensus 172 ~~l~~lGi~~Dw~~~~~T~d~~~~ 195 (577)
.++.++|+..+ +.+.-.+..+.
T Consensus 138 ~~iiA~G~dp~--kt~I~s~~~~~ 159 (383)
T PLN02486 138 KDIIACGFDVE--RTFIFSDFDYV 159 (383)
T ss_pred HHHHHhCCCCc--ceEEEeccHHH
Confidence 78888998655 43333444444
No 126
>PLN02224 methionine-tRNA ligase
Probab=83.84 E-value=0.45 Score=54.40 Aligned_cols=19 Identities=42% Similarity=0.858 Sum_probs=16.8
Q ss_pred ccCcccccCcC-ccccccce
Q 008100 489 KLRDWLFARQR-YWGEPIPV 507 (577)
Q Consensus 489 ~~~DWcISRQR-~WG~PIPv 507 (577)
.++||||||.+ .||+|+|-
T Consensus 264 gL~d~~ISR~~~~WGIpvP~ 283 (616)
T PLN02224 264 GLRDFSISRALVDWGIPVPD 283 (616)
T ss_pred CCCCccccCCCCCCceECCC
Confidence 47899999997 69999994
No 127
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.52 E-value=0.053 Score=63.09 Aligned_cols=98 Identities=22% Similarity=0.263 Sum_probs=59.3
Q ss_pred EEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchhhh-hhhhcc-cccccceEEecCCCCCe-
Q 008100 309 ITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERT-ELQKEK-TGVFSGCYARNPASGEA- 385 (577)
Q Consensus 309 l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~G~~~~~P~~~~~- 385 (577)
....|-+|+|+.+-|..+|+|+..|.......... + . ..++.. ...... +-.+.+.--.|||.++.
T Consensus 208 ~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~----~-~------~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~ 276 (814)
T COG0495 208 DKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEE----E-I------VSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLV 276 (814)
T ss_pred hhhccCCchhHHHHHHcCcCCCCCeEEEEecCCcc----c-c------eeeeeeeccCccccCeEEEEEeCCchHHHHHh
Confidence 44556699999999999999999876543311100 0 0 000000 000001 11222222335554331
Q ss_pred ---eeEEeecccccCCCCCceeccCCCChhhHHHH
Q 008100 386 ---IPIWVADYVLGSYGTGAIMAVPAHDTRDHEFA 417 (577)
Q Consensus 386 ---ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~ 417 (577)
..+.+++||+...|||+|+.+|+|.+.|+..-
T Consensus 277 ~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~ 311 (814)
T COG0495 277 TNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFL 311 (814)
T ss_pred cCccchhHHHHHHHhcCCCceeeeeccCCCcceec
Confidence 22788999999999999999999999998653
No 128
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=82.52 E-value=2.9 Score=39.30 Aligned_cols=94 Identities=23% Similarity=0.296 Sum_probs=52.7
Q ss_pred HHHHHHHcCCcccCcc-cccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHH
Q 008100 124 LARLKRMQGYNVLHPM-GWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIF 202 (577)
Q Consensus 124 i~Ry~rm~G~~V~~~~-G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f 202 (577)
+||++|+.||++.|.. ..|. .+...+.+.| ....-+-...++.. ++|+ +.++-.+.+..+++.+++
T Consensus 18 LARwLRllGydt~~~~~~~d~---~i~~i~~~e~---rIllTRDr~L~~r~--k~g~-----~~i~i~~~s~~~Ql~e~~ 84 (165)
T COG1656 18 LARWLRLLGYDTVYSSNESDD---EIILIAKKEG---RILLTRDRELYKRA--KLGI-----KAILIRSDSIEEQLAEFL 84 (165)
T ss_pred HHHHHHHcCCceeeeccCCcH---HHHHHHhcCC---eEEEeccHHHHHHh--hccC-----ceEEEeCCCHHHHHHHHH
Confidence 6899999999999886 3332 2233333322 12222222222222 5666 234444556667777777
Q ss_pred HHHHHCCceeeeccC-cccCCCCCccC---Cchhhc
Q 008100 203 LQLLKRGLAYQAEVP-VNWCPALGTVL---ANEEVV 234 (577)
Q Consensus 203 ~~L~~kGliy~~~~~-v~wc~~~~t~L---s~~Ev~ 234 (577)
.++-.++ ...+ ..=||.|++.| +.+||+
T Consensus 85 ~~~~l~~----~~~~e~~RCp~CN~~L~~vs~eev~ 116 (165)
T COG1656 85 ARLGLKP----RLFPEFSRCPECNGELEKVSREEVK 116 (165)
T ss_pred HHhccch----hcccccccCcccCCEeccCcHHHHh
Confidence 7665444 2223 55699999877 556654
No 129
>PLN02381 valyl-tRNA synthetase
Probab=82.23 E-value=2.1 Score=52.11 Aligned_cols=80 Identities=21% Similarity=0.314 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhcc-----
Q 008100 194 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDL----- 268 (577)
Q Consensus 194 ~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l----- 268 (577)
..+.-..++..|.++|++.+.... +...+.|++|+.+++.+-..|||+++...+++..+.+
T Consensus 426 ~~eAr~~Ii~~L~~~g~l~~~~~~--------------~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~ 491 (1066)
T PLN02381 426 RFAAREAVIEALQKKGLYRGAKNN--------------EMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGEN 491 (1066)
T ss_pred HHHHHHHHHHHHHhCCCEecceee--------------ecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccC
Confidence 344566788899999998755432 2225678899999999999999999999999998877
Q ss_pred CCCC-CCHHHHHHHHHhhhc
Q 008100 269 DDLD-WPESVKEMQRNWIGR 287 (577)
Q Consensus 269 ~~~~-~p~~~~~~~~~~i~~ 287 (577)
+.+. .|+..++...+||..
T Consensus 492 ~~i~~~P~~~~~~~~~wl~n 511 (1066)
T PLN02381 492 KKLEFIPKQYLAEWKRWLEN 511 (1066)
T ss_pred CceEEEChHHHHHHHHHHhc
Confidence 3443 799998888899854
No 130
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=82.03 E-value=6.5 Score=42.17 Aligned_cols=76 Identities=30% Similarity=0.354 Sum_probs=45.7
Q ss_pred CCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHH
Q 008100 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (577)
Q Consensus 93 ~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (577)
+++++++.|.- |+|. +||||... ...+.+++. .|+++.+..+=+ |.+ . . .+.+ .+.+.++...+..
T Consensus 64 ~~~~~iytG~~-PSG~-lHLGh~~~---~~~~~~lQ~-~g~~~~i~IaD~-ha~--~---~-~~~~-~e~~~~~~~~~~~ 129 (368)
T PRK12285 64 GKPFAVYTGFM-PSGP-MHIGHKMV---FDELKWHQE-FGANVYIPIADD-EAY--A---A-RGLS-WEETREWAYEYIL 129 (368)
T ss_pred CCCeEEEEccC-CCCC-ccHHHHHH---HHHHHHHHh-cCCCEEEEecch-HHH--h---c-CCCC-HHHHHHHHHHHHH
Confidence 45677777754 3487 99999642 445566666 788876555433 322 1 0 1222 2345555666778
Q ss_pred HHHHhCCCCC
Q 008100 173 QLKSLGFSYD 182 (577)
Q Consensus 173 ~l~~lGi~~D 182 (577)
++.++|+..+
T Consensus 130 ~~lA~G~Dp~ 139 (368)
T PRK12285 130 DLIALGFDPD 139 (368)
T ss_pred HHHHhCCCcc
Confidence 9999998544
No 131
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=81.39 E-value=6.6 Score=46.31 Aligned_cols=80 Identities=24% Similarity=0.429 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccC--CCC
Q 008100 195 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLD--DLD 272 (577)
Q Consensus 195 ~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~--~~~ 272 (577)
.++-..+...|.++|++.+.+....= -+.|++||.+++..-.+|||++...+++...+..+ ...
T Consensus 314 ~eAR~kIv~~L~~~GlLvk~e~~~h~--------------V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~ 379 (877)
T COG0525 314 FEARKKIVEDLEEQGLLVKIEPHKHS--------------VGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIK 379 (877)
T ss_pred HHHHHHHHHHHHhCCCeEeeeecccc--------------CccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCce
Confidence 34456788999999999987654321 13466777777888889999999999999988887 444
Q ss_pred -CCHHHHHHHHHhhhcc
Q 008100 273 -WPESVKEMQRNWIGRS 288 (577)
Q Consensus 273 -~p~~~~~~~~~~i~~~ 288 (577)
.|+...+.-.+|+..-
T Consensus 380 f~P~~~~~~~~~W~~~i 396 (877)
T COG0525 380 FVPERMEKRYEDWMENI 396 (877)
T ss_pred EecHHHHHHHHHHHhhC
Confidence 8999999999999543
No 132
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=80.91 E-value=2.2 Score=39.57 Aligned_cols=31 Identities=35% Similarity=0.437 Sum_probs=22.9
Q ss_pred HHHHHHHcCCcccCcccccccChHHHHHHHHhC
Q 008100 124 LARLKRMQGYNVLHPMGWDAFGLPAEQYAIETG 156 (577)
Q Consensus 124 i~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g 156 (577)
++||+|+.||+|.+..+.++..+ ...|.+.+
T Consensus 12 Lar~LR~lG~Dt~~~~~~~D~~i--l~~A~~e~ 42 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDIDDDEI--LELAREEG 42 (147)
T ss_pred HHHHHHHCCCcEEEeCCCChHHH--HHHhhhCC
Confidence 68999999999999998766554 34444433
No 133
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=80.58 E-value=0.94 Score=51.00 Aligned_cols=18 Identities=39% Similarity=0.853 Sum_probs=17.0
Q ss_pred ccCcccccC-cCccccccc
Q 008100 489 KLRDWLFAR-QRYWGEPIP 506 (577)
Q Consensus 489 ~~~DWcISR-QR~WG~PIP 506 (577)
.++|||||| --.||+|||
T Consensus 228 GL~d~~IsR~~~~WGipvP 246 (558)
T COG0143 228 GLKDLSITRTDLDWGIPVP 246 (558)
T ss_pred cCcccceecCCCCCCccCC
Confidence 379999999 999999999
No 134
>PLN02610 probable methionyl-tRNA synthetase
Probab=79.87 E-value=0.7 Score=54.46 Aligned_cols=19 Identities=32% Similarity=0.767 Sum_probs=17.5
Q ss_pred ccCcccccCcCccccccce
Q 008100 489 KLRDWLFARQRYWGEPIPV 507 (577)
Q Consensus 489 ~~~DWcISRQR~WG~PIPv 507 (577)
.++||||||...||+|+|.
T Consensus 244 gL~d~~IsR~~~WGipvP~ 262 (801)
T PLN02610 244 GLKPRCITRDLKWGVPVPL 262 (801)
T ss_pred CCCCcceeeecCCcccCCC
Confidence 4799999999999999994
No 135
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=75.76 E-value=4.6 Score=41.47 Aligned_cols=71 Identities=24% Similarity=0.362 Sum_probs=41.5
Q ss_pred CCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCccccccc--ChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCC
Q 008100 105 PSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAF--GLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (577)
Q Consensus 105 png~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~--Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~ 180 (577)
|+|..|||||..+ -..+.++++ .|+++.+..|=.+. |.|- -+..+......+...++...+..++.++|+.
T Consensus 8 PTg~~lHlGh~~~---l~~~~~lq~-~g~~~~~~I~d~~a~~~d~s-g~~~~r~~~~~~~i~~n~~~~~~~~~a~g~d 80 (273)
T cd00395 8 PTADSLHIGHLIG---LLTFRRFQH-AGHRPIFLIGGQTGIIGDPS-GKKSERTLNDPEEVRQNIRRIAAQYLAVGIF 80 (273)
T ss_pred CCCCCccHHHHHH---HHHHHHHHH-CCCCEEEEEecCceeeCCCC-CccccccCCCHHHHHHHHHHHHHHHHHhcCc
Confidence 5672299999877 334455554 69998776652221 1121 0011111123455677788899999999984
No 136
>PLN02959 aminoacyl-tRNA ligase
Probab=75.24 E-value=4.3 Score=49.71 Aligned_cols=77 Identities=18% Similarity=0.278 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHh--hhhHHHhhccCCC
Q 008100 194 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKIT--EYADRLLDDLDDL 271 (577)
Q Consensus 194 ~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~--~y~~~l~~~l~~~ 271 (577)
..+.-..+.+.|.++|++.....+ +.+.+.|||.+++..-..|||+++. .+++...+.++.+
T Consensus 493 v~eAr~~Ii~~L~~~G~l~~~~ep----------------~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v 556 (1084)
T PLN02959 493 VQEAKPLIKKKLIEAGQAILYSEP----------------EKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKM 556 (1084)
T ss_pred HHHHHHHHHHHHHhCCCceeeeEc----------------CCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHHccc
Confidence 344556688889999976532221 1245678999999999999999997 6888888888888
Q ss_pred C-CCHHHHHHHHHhhh
Q 008100 272 D-WPESVKEMQRNWIG 286 (577)
Q Consensus 272 ~-~p~~~~~~~~~~i~ 286 (577)
. .|+..++...+||.
T Consensus 557 ~~~P~~~~~~~~~wl~ 572 (1084)
T PLN02959 557 NLYSDETRHGFEHTLG 572 (1084)
T ss_pred EEECHHHHHHHHHHHh
Confidence 6 59999999999884
No 137
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=75.13 E-value=7 Score=42.21 Aligned_cols=127 Identities=20% Similarity=0.211 Sum_probs=77.1
Q ss_pred CCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCC
Q 008100 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (577)
Q Consensus 102 pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~ 181 (577)
-|-|+|. ||+|-+|+...-=++||- ..|.-++.+--+|-.- .+....+.+.++|+-+|+..
T Consensus 39 APSPTGf-LHlGgLRTALfNYLfArk--~gGkFiLRiEDTDq~R----------------~v~gs~e~i~~~L~w~nl~~ 99 (524)
T KOG1149|consen 39 APSPTGF-LHLGGLRTALFNYLFARK--KGGKFILRIEDTDQKR----------------LIRGSEEAIYEDLKWANLDW 99 (524)
T ss_pred cCCCCcc-eehhhHHHHHHHHHHHHh--cCCeEEEEeccccccc----------------cccchHHHHHHHHHhcCCCc
Confidence 5889998 999999999888888773 4677777666555321 12222356677888899954
Q ss_pred CCCCc------eeCCCh-hhHHHHHHHHHHHHHCCceeeec----------------cCcc-cCCCCCccCCchhhccCc
Q 008100 182 DWNRE------ISTIEP-AYYKWTQWIFLQLLKRGLAYQAE----------------VPVN-WCPALGTVLANEEVVDGV 237 (577)
Q Consensus 182 Dw~~~------~~T~d~-~~~~~v~~~f~~L~~kGliy~~~----------------~~v~-wc~~~~t~Ls~~Ev~~~~ 237 (577)
| .- +-++.. +--+.-....++|.+.|.+|+-. ..++ |+- |..-|+++|++...
T Consensus 100 D--EgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~-kca~ls~~ei~~~l 176 (524)
T KOG1149|consen 100 D--EGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDR-KCANLSDAEIKQKL 176 (524)
T ss_pred c--cCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccc-hhcccCHHHHHHHH
Confidence 4 32 111111 11222345667799999999843 2234 444 44568999987421
Q ss_pred cccCCcC-eEEEeccc
Q 008100 238 SERGGHP-VIRKPMRQ 252 (577)
Q Consensus 238 ~~~~~~~-~~~~~~~~ 252 (577)
..|.| +++++++.
T Consensus 177 --akg~pf~iRFrl~~ 190 (524)
T KOG1149|consen 177 --AKGTPFTIRFRLPK 190 (524)
T ss_pred --hcCCCeeEEEecCC
Confidence 22444 45555543
No 138
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=74.18 E-value=6.2 Score=47.43 Aligned_cols=79 Identities=23% Similarity=0.299 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEec-ccchhhHh--hhhHHHhhccC
Q 008100 193 AYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPM-RQWMLKIT--EYADRLLDDLD 269 (577)
Q Consensus 193 ~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~-~~~~~~l~--~y~~~l~~~l~ 269 (577)
...++-..+.+.|.++|++.+.....+ .+.|.+||.+++.+.+ .|||++++ .+++.+++.++
T Consensus 353 ~v~eA~~~I~~~L~~~g~~~~~~~~~~---------------~~~~~R~~~~~i~~~~~~QWFi~~~~~~~k~~~~~~~~ 417 (897)
T PRK12300 353 PVREAREKITKDLIEKGIADIMYEFSN---------------RPVYCRCGTECVVKVVKDQWFIDYSDPEWKELAHKALD 417 (897)
T ss_pred EHHHHHHHHHHHHHHCCCeEEEEecCC---------------CCcCcCCCCEEEEEecCCceEEEcCcHHHHHHHHHHHc
Confidence 344556778889999999877432111 1233478888877764 99999997 79999999998
Q ss_pred CCC-CCHHHHHHHHHhhh
Q 008100 270 DLD-WPESVKEMQRNWIG 286 (577)
Q Consensus 270 ~~~-~p~~~~~~~~~~i~ 286 (577)
... +|+.+++...+||.
T Consensus 418 ~~~~~P~~~~~~~~~~l~ 435 (897)
T PRK12300 418 NMEIIPEEYRKEFENTID 435 (897)
T ss_pred cCEEECHHHHHHHHHHHh
Confidence 875 89999988888884
No 139
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=72.04 E-value=6.4 Score=42.87 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=45.5
Q ss_pred CcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccc--cChHHHHHHHHhCCCchhhHHHHHHHHH
Q 008100 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDA--FGLPAEQYAIETGTHPKITTLRNINRFR 171 (577)
Q Consensus 94 ~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~--~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (577)
+++.++.|.= |+|+.|||||+.. --. .|+.+..|+++.++.|=.+ .|.|-- +..++..-..+.+.+++..++
T Consensus 32 ~~~~iy~G~d-PT~~sLHlGhlv~---l~~-l~~lq~~G~~~~~ligd~ta~igDpsg-k~~~R~~l~~e~i~~n~~~i~ 105 (410)
T PRK13354 32 KPLTLYLGFD-PTAPSLHIGHLVP---LMK-LKRFQDAGHRPVILIGGFTGKIGDPSG-KSKERKLLTDEQVQHNAKTYT 105 (410)
T ss_pred CCcEEEEccc-CCCCCcchhhHHH---HHH-HHHHHHcCCeEEEEEcccccccCCCCc-ccccccCCCHHHHHHHHHHHH
Confidence 3456666653 4442299999544 222 3444558999887776444 344421 111111223345667788888
Q ss_pred HHHHHhCCCCC
Q 008100 172 TQLKSLGFSYD 182 (577)
Q Consensus 172 ~~l~~lGi~~D 182 (577)
.|+.+ |+..+
T Consensus 106 ~q~~~-~ld~~ 115 (410)
T PRK13354 106 EQIFK-LFDFE 115 (410)
T ss_pred HHHHH-hcCcc
Confidence 88777 55433
No 140
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=68.99 E-value=3.7 Score=42.07 Aligned_cols=71 Identities=23% Similarity=0.238 Sum_probs=43.1
Q ss_pred CCCC-CCCCcchhhHhHHHHHHHHHHHHcCCcccCccccccc--ChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCC
Q 008100 104 YPSG-AGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAF--GLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (577)
Q Consensus 104 ypng-~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~--Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~ 180 (577)
-|+| . |||||.... -.+.|++++ |++|.+..|=.+. |.|.- +..++.....+...++...+..++.++|..
T Consensus 8 ~PTg~~-lHLG~~~~~---~~~~~lq~~-g~~~~ilI~D~~a~~~~~~~-~~~~r~~~~~~~i~~~~~~~~~~~~a~g~~ 81 (269)
T cd00805 8 DPTAPS-LHLGHLVPL---MKLRDFQQA-GHEVIVLIGDATAMIGDPSG-KSEERKLLDLELIRENAKYYKKQLKAILDF 81 (269)
T ss_pred CCCCCc-ccHHHHHHH---HHHHHHHHC-CCeEEEEECCCeeecCCCCC-ccccccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 3567 5 999998752 367777775 9988766653322 11210 011111122345677788899999999985
No 141
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=68.36 E-value=12 Score=38.67 Aligned_cols=68 Identities=25% Similarity=0.359 Sum_probs=41.5
Q ss_pred CCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCC-chhhHHHHHHHHHHHHHHhCCCCC
Q 008100 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTH-PKITTLRNINRFRTQLKSLGFSYD 182 (577)
Q Consensus 104 ypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~-~~~~~~~~~~~~~~~l~~lGi~~D 182 (577)
-|+|. |||||..+.+.. +.+++. .|+++.+..+ |-|.+- +.. ..+...+++..+..++.++|+ |
T Consensus 7 ~PTG~-lHLG~~~~al~~--~~~lQ~-ag~~~~~~Ia-D~ha~t--------~~~~~~~~~~~~~~~~~~~~lA~G~--d 71 (280)
T cd00806 7 QPSGS-LHLGHYLGAFRF--WVWLQE-AGYELFFFIA-DLHALT--------VKQLDPEELRQNTRENAKDYLACGL--D 71 (280)
T ss_pred CCCch-hhHHHHHHHHHH--HHHHHh-CCCCEEEEec-chHHHh--------CCCCCHHHHHHHHHHHHHHHHHcCC--C
Confidence 35676 999998885432 333333 4888765544 333331 111 234566777888899999998 5
Q ss_pred CCCc
Q 008100 183 WNRE 186 (577)
Q Consensus 183 w~~~ 186 (577)
+++.
T Consensus 72 p~k~ 75 (280)
T cd00806 72 PEKS 75 (280)
T ss_pred cccC
Confidence 4444
No 142
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=63.96 E-value=15 Score=39.91 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=43.9
Q ss_pred cEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccc------cccChHHHHHHHHhCCCchhhHHHHHH
Q 008100 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGW------DAFGLPAEQYAIETGTHPKITTLRNIN 168 (577)
Q Consensus 95 ~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~------D~~Glpie~~a~~~g~~~~~~~~~~~~ 168 (577)
++.++.|.= |+|..|||||... -..+.+++ ..|+++.+..|= |..|-+. +......+.+.++++
T Consensus 33 ~~~vy~G~d-PTg~slHlGhlv~---l~~l~~lQ-~~G~~~~~ligd~ta~igDpsgk~~-----~r~~l~~e~i~~n~~ 102 (408)
T PRK05912 33 PLRIYLGFD-PTAPSLHLGHLVP---LLKLRRFQ-DAGHKPIALIGGFTGMIGDPSGKSE-----TRKLLTREQVAENAE 102 (408)
T ss_pred CCEEEEeec-CCCCCccHHhHHH---HHHHHHHH-HCCCcEEEEEcCceeEcCCCCCCch-----hhccCCHHHHHHHHH
Confidence 355665643 4552299999773 23455554 479988776652 2333221 112223455667777
Q ss_pred HHHHHHHHhCCCCC
Q 008100 169 RFRTQLKSLGFSYD 182 (577)
Q Consensus 169 ~~~~~l~~lGi~~D 182 (577)
.+++|+ +.|+..|
T Consensus 103 ~i~~ql-~~~ld~~ 115 (408)
T PRK05912 103 TIKEQL-FKFLDFE 115 (408)
T ss_pred HHHHHH-HHhcCcC
Confidence 888887 5666444
No 143
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=61.62 E-value=7.1 Score=42.25 Aligned_cols=98 Identities=22% Similarity=0.270 Sum_probs=52.0
Q ss_pred CCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCccccc--ccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCCC
Q 008100 105 PSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWD--AFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYD 182 (577)
Q Consensus 105 png~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D--~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~D 182 (577)
|+|+.|||||.... -.+ |-++..|++|....|-= --|.|. -+..+.....++.+.++.+.+++|+.+. .|
T Consensus 41 PTa~slHlGhlv~l---~kL-~~fQ~aGh~~ivLigd~ta~IgDps-Gk~e~r~~l~~e~v~~n~~~i~~ql~~~---ld 112 (401)
T COG0162 41 PTAPSLHLGHLVPL---MKL-RRFQDAGHKPIVLIGDATAMIGDPS-GKSEERKLLTRETVLENAETIKKQLGKF---LD 112 (401)
T ss_pred CCCCccchhhHHHH---HHH-HHHHHCCCeEEEEecccceecCCCC-CCHHHHhhccHHHHHHHHHHHHHHhccc---CC
Confidence 45533999998763 223 33446899998887722 124442 1112222223455667777777666542 22
Q ss_pred CC------CceeCCChhhHHHHHHH-----HHHHHHCCce
Q 008100 183 WN------REISTIEPAYYKWTQWI-----FLQLLKRGLA 211 (577)
Q Consensus 183 w~------~~~~T~d~~~~~~v~~~-----f~~L~~kGli 211 (577)
+ +.-+..+..|...+..+ ..+|.++.-+
T Consensus 113 -~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~ 151 (401)
T COG0162 113 -NKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDV 151 (401)
T ss_pred -cceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhH
Confidence 1 12234455677766665 5555554433
No 144
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=60.69 E-value=25 Score=38.37 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=53.8
Q ss_pred CCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCCCC
Q 008100 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDW 183 (577)
Q Consensus 104 ypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~Dw 183 (577)
-|+|. |||||..+.+-. ..+.+...|+++.+. =-|-|-+- ...++. ...++...+...+..+|+..+=
T Consensus 10 qPTG~-lHLGNylGaik~--~v~lq~q~~~~~~~~-IADlHAlT-------~~~dp~-~lr~~~~e~aa~~LA~GlDPek 77 (431)
T PRK12284 10 TTTGT-PHLGNYAGAIRP--AIAASRQPGVESFYF-LADYHALI-------KCDDPA-RIQRSTLEIAATWLAAGLDPER 77 (431)
T ss_pred cCCCc-chHHHHHHHHHH--HHHHHHhCCCcEEEE-eechhhcc-------CCCCHH-HHHHHHHHHHHHHHHhCCCccc
Confidence 36787 999997776432 334444568886433 33444331 011232 3344455678889999996652
Q ss_pred CCceeCCC-hhhHHHHHHHHHHHHHCCcee
Q 008100 184 NREISTIE-PAYYKWTQWIFLQLLKRGLAY 212 (577)
Q Consensus 184 ~~~~~T~d-~~~~~~v~~~f~~L~~kGliy 212 (577)
...|.-++ +++. ...|+|..+-..|.+-
T Consensus 78 ~~if~QSdvpeh~-EL~wiL~~it~~g~L~ 106 (431)
T PRK12284 78 VTFYRQSDIPEIP-ELTWLLTCVAGKGLLN 106 (431)
T ss_pred eEEEECCcchhHH-HHHHHHHhhhhHHHHH
Confidence 23444444 4543 4566666555555443
No 145
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=58.87 E-value=48 Score=34.76 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=47.8
Q ss_pred cEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCC-cccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHH
Q 008100 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGY-NVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQ 173 (577)
Q Consensus 95 ~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~-~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (577)
++.|++|. -|+|. |||||..+.+ -.+++...++ ++ |.+=.|.|.+-+ .+....+..++++.....+
T Consensus 5 ~~~vlSG~-~PSG~-lHLGny~ga~----~~~v~~q~~~~~~-f~~IaDlha~t~------~~~~~~~~l~~~~~e~~a~ 71 (314)
T COG0180 5 KFRVLSGI-QPSGK-LHLGNYLGAI----RNWVLLQEEYYEC-FFFIADLHAITV------RQDPTEEDLRQATREVAAD 71 (314)
T ss_pred CceEEecC-CCCCC-cchhHhHHHH----HHHHHHhcccCce-EEEEecHHHhhc------CCCChHHHHHHHHHHHHHH
Confidence 34555553 46887 9999998874 3566666664 55 455556665432 1222224566677778888
Q ss_pred HHHhCCCCC
Q 008100 174 LKSLGFSYD 182 (577)
Q Consensus 174 l~~lGi~~D 182 (577)
+-++|+..+
T Consensus 72 ~LA~GiDP~ 80 (314)
T COG0180 72 YLAVGLDPE 80 (314)
T ss_pred HHHhccCcc
Confidence 999999776
No 146
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=57.20 E-value=32 Score=36.33 Aligned_cols=74 Identities=23% Similarity=0.288 Sum_probs=43.1
Q ss_pred cEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHH
Q 008100 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQL 174 (577)
Q Consensus 95 ~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l 174 (577)
+++++.|. -|+|. +||||.. .+.. +.++++ .|+++.+..+ |-|.+-. .....+...++...+..++
T Consensus 30 ~~~v~~G~-~PTG~-lHLG~~~-~~~~--~~~lq~-~g~~~~i~Ia-D~ha~~~-------~~~~~~~i~~~~~~~~~~~ 95 (329)
T PRK08560 30 EPKAYIGF-EPSGK-IHLGHLL-TMNK--LADLQK-AGFKVTVLLA-DWHAYLN-------DKGDLEEIRKVAEYNKKVF 95 (329)
T ss_pred CCEEEEcc-CCCCc-chhhhhH-HHHH--HHHHHH-CCCeEEEEEc-cchhhcC-------CCCCHHHHHHHHHHHHHHH
Confidence 34455453 45687 9999955 3222 666666 4888755444 3333210 0012344566677788899
Q ss_pred HHhCCCCC
Q 008100 175 KSLGFSYD 182 (577)
Q Consensus 175 ~~lGi~~D 182 (577)
.++|+..+
T Consensus 96 ~A~G~dp~ 103 (329)
T PRK08560 96 EALGLDPD 103 (329)
T ss_pred HHcCCChh
Confidence 99998544
No 147
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=54.70 E-value=4.4 Score=43.84 Aligned_cols=18 Identities=39% Similarity=0.776 Sum_probs=12.9
Q ss_pred ccCcccccCcCccccccc
Q 008100 489 KLRDWLFARQRYWGEPIP 506 (577)
Q Consensus 489 ~~~DWcISRQR~WG~PIP 506 (577)
.++||||||.-.||+|+|
T Consensus 221 ~L~d~~Is~~~~WGI~vP 238 (391)
T PF09334_consen 221 GLPDLSISRPLDWGIPVP 238 (391)
T ss_dssp ----EE-ECTTSSSEEET
T ss_pred ccCceeeecCCCCcceee
Confidence 479999999999999999
No 148
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=52.73 E-value=18 Score=38.20 Aligned_cols=65 Identities=20% Similarity=0.330 Sum_probs=39.6
Q ss_pred CCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCCC
Q 008100 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYD 182 (577)
Q Consensus 104 ypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~D 182 (577)
-|+|. +||||..+.+.+ +.+++. +++|.+..+ |-|-+-. .. ..+...++...+..++.++|+..+
T Consensus 9 ~PTG~-lHLG~~~g~~~~--~~~lQ~--~~~~~~~Ia-D~ha~t~-------~~-~~~~i~~~~~~~~~~~lA~GlDp~ 73 (333)
T PRK00927 9 QPTGK-LHLGNYLGAIKN--WVELQD--EYECFFCIA-DLHALTV-------PQ-DPEELRENTRELAADYLACGIDPE 73 (333)
T ss_pred CCCcc-chHHhHHHHHHH--HHHHHh--cCCeEEEEe-cHHHHhC-------CC-CHHHHHHHHHHHHHHHHeEccChh
Confidence 46787 999999877533 555555 366655443 3222210 11 224456667778888999999655
No 149
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=52.14 E-value=47 Score=35.04 Aligned_cols=73 Identities=18% Similarity=0.302 Sum_probs=40.9
Q ss_pred EEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Q 008100 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (577)
Q Consensus 97 ~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (577)
+++.|. -|+|. +||||..+.+. .++....|+++.+..+ |-|.+-. ... ...+...+....+..++.+
T Consensus 4 ~v~~G~-~PTG~-~HlG~~l~~~~----~~~~~q~~~~~~i~Ia-D~ha~t~-----~~~-~~~~~~~~~~~~~~~~~lA 70 (328)
T TIGR00233 4 RVLTGI-QPSGK-MHLGHYLGAIQ----TKWLQQFGVELFICIA-DLHAITV-----KDN-TDPDALRKAREELAADILA 70 (328)
T ss_pred EEEEee-CCCcH-hHHHHHHHHHH----HHHHHhCCCCEEEEee-cchhhcC-----CCC-CCHHHHHHHHHHHHHHHHH
Confidence 344443 45676 99999877543 3444467888755544 3332210 001 1122334455666778889
Q ss_pred hCCCCC
Q 008100 177 LGFSYD 182 (577)
Q Consensus 177 lGi~~D 182 (577)
+|+..|
T Consensus 71 ~GlDp~ 76 (328)
T TIGR00233 71 VGLDPK 76 (328)
T ss_pred hCcChh
Confidence 999766
No 150
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=51.87 E-value=31 Score=36.96 Aligned_cols=70 Identities=27% Similarity=0.327 Sum_probs=41.4
Q ss_pred EEEcC-CCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccc------cccChHHHHHHHHhCCCchhhHHHHHHH
Q 008100 97 YVLDM-FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGW------DAFGLPAEQYAIETGTHPKITTLRNINR 169 (577)
Q Consensus 97 ~i~~~-pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~------D~~Glpie~~a~~~g~~~~~~~~~~~~~ 169 (577)
+|++| =|++-. ||+||.+.-+ ++.+++| .|+++.-+.|= |-.|-+.|..+.+ .+..+.++..
T Consensus 65 ~vYcGfDPTA~S--LHvGNLl~lm---~L~hfqr-~Gh~~ialIGgATa~vGDPSGrktER~~l~-----~d~~~~N~~~ 133 (467)
T KOG2623|consen 65 YVYCGFDPTAES--LHVGNLLALM---VLIHFQR-AGHRPIALIGGATASVGDPSGRKTERGQLA-----EDTREANSRS 133 (467)
T ss_pred eEEecCCCcHHh--hhhcchHHHH---HHHHHHH-cCCCceEEeccccccccCCCCCccchhhhh-----hHHHHHhHHH
Confidence 34445 456555 8999998743 3456555 89999877772 3333333433222 2345566667
Q ss_pred HHHHHHHh
Q 008100 170 FRTQLKSL 177 (577)
Q Consensus 170 ~~~~l~~l 177 (577)
+.+|+.++
T Consensus 134 I~~ql~~i 141 (467)
T KOG2623|consen 134 ITQQLCKI 141 (467)
T ss_pred HHHHHHHH
Confidence 77666664
No 151
>PLN02886 aminoacyl-tRNA ligase
Probab=49.23 E-value=27 Score=37.72 Aligned_cols=85 Identities=16% Similarity=0.231 Sum_probs=47.2
Q ss_pred CCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCCCCC
Q 008100 105 PSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWN 184 (577)
Q Consensus 105 png~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~Dw~ 184 (577)
|+|. +||||.++.+ .-+++++. |+++. ++=-|-|-+- ...++ +..+++...+...+..+|+..+=.
T Consensus 55 PSG~-lHLGnylGai--~~~v~lQ~--~~~~~-~~IADlHAlt-------~~~~~-~~lr~~~~~~~a~~lA~GlDP~ks 120 (389)
T PLN02886 55 PTGS-IHLGNYLGAI--KNWVALQE--TYDTF-FCVVDLHAIT-------LPHDP-RELGKATRSTAAIYLACGIDPSKA 120 (389)
T ss_pred CCCc-cHHHHHHHHH--HHHHHHhc--cCCEE-EEEecHHHhh-------CCCCH-HHHHHHHHHHHHHHHHcCcCccce
Confidence 5687 9999988765 33444544 77763 3334444331 11122 344555666788999999976522
Q ss_pred CceeCCC-hhhHHHHHHHHHH
Q 008100 185 REISTIE-PAYYKWTQWIFLQ 204 (577)
Q Consensus 185 ~~~~T~d-~~~~~~v~~~f~~ 204 (577)
..|.-++ +++.+ ..|++..
T Consensus 121 ~if~QS~v~e~~e-L~wil~~ 140 (389)
T PLN02886 121 SVFVQSHVPAHAE-LMWLLSC 140 (389)
T ss_pred EEEEeCCCchhHH-HHHHHHh
Confidence 2333333 44433 3455444
No 152
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=46.85 E-value=21 Score=32.66 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=11.8
Q ss_pred ceEEECCCCeeeecC
Q 008100 506 PVVFLDGTGETVPLH 520 (577)
Q Consensus 506 Pv~~~~~~g~~~~~~ 520 (577)
+.|+|.+||....+.
T Consensus 69 ~~~~C~~CG~~~~~~ 83 (135)
T PRK03824 69 AVLKCRNCGNEWSLK 83 (135)
T ss_pred eEEECCCCCCEEecc
Confidence 668999999777654
No 153
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=45.44 E-value=14 Score=35.43 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=28.0
Q ss_pred HHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEE
Q 008100 206 LKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRK 248 (577)
Q Consensus 206 ~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~ 248 (577)
.+++-.+-+.-++|||..|+-+|-. .+|..||......
T Consensus 2 ~kk~~~~~gk~~iyWCe~cNlPl~~-----~~c~~cg~~~~~l 39 (202)
T COG5270 2 RKKMPVVLGKFPIYWCEKCNLPLLG-----RRCSVCGSKVEEL 39 (202)
T ss_pred CcccceeecccceeehhhCCCcccc-----ccccccCCcceEE
Confidence 4567788999999999999988753 3566677654433
No 154
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=42.39 E-value=22 Score=32.93 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=10.5
Q ss_pred cccCCCCC-Cccccc
Q 008100 553 TTEHSSGK-PARRET 566 (577)
Q Consensus 553 ~~~~~~g~-~~~R~t 566 (577)
++||+||+ .|.|.+
T Consensus 131 ~~Cp~C~~~~F~R~~ 145 (146)
T PF07295_consen 131 PPCPKCGHTEFTRQP 145 (146)
T ss_pred CCCCCCCCCeeeeCC
Confidence 47999996 577754
No 155
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=41.90 E-value=20 Score=36.76 Aligned_cols=90 Identities=12% Similarity=0.183 Sum_probs=47.5
Q ss_pred CCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHH
Q 008100 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR 171 (577)
Q Consensus 92 ~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (577)
.+++||++.|-=+-++. +|+||..-++. ..|++ .-++|..+.-..+- |...-+ .. .-+.+.++..+-.
T Consensus 82 q~kpFyLYTGRGpSS~s-mHlGHliPFif----tKwlQ-e~F~vpLVIqlTDD----EKflwK-~l-~~eda~~~arENa 149 (397)
T KOG2145|consen 82 QGKPFYLYTGRGPSSES-MHLGHLIPFIF----TKWLQ-DVFDVPLVIQLTDD----EKFLWK-DL-TLEDAKKYARENA 149 (397)
T ss_pred cCCceEEEeCCCCCccc-cccccchhHHH----HHHHH-HHhCCceEEEeccc----HHHHHh-hC-cHHHHHHHHHhcc
Confidence 45679999987767776 99999877643 44443 33566554432221 100000 00 0112233333333
Q ss_pred HHHHHhCCCCCCCCceeCCChhhH
Q 008100 172 TQLKSLGFSYDWNREISTIEPAYY 195 (577)
Q Consensus 172 ~~l~~lGi~~Dw~~~~~T~d~~~~ 195 (577)
++..++|+... ..|.-++-+|+
T Consensus 150 KDIia~GFDp~--kTfIFsn~~y~ 171 (397)
T KOG2145|consen 150 KDIIAVGFDPK--KTFIFSNLDYM 171 (397)
T ss_pred cceEEeccCCc--ceEEEechhhc
Confidence 45556776444 66666666665
No 156
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=39.97 E-value=32 Score=39.50 Aligned_cols=75 Identities=23% Similarity=0.445 Sum_probs=56.2
Q ss_pred HHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCC-CHH
Q 008100 198 TQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW-PES 276 (577)
Q Consensus 198 v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~-p~~ 276 (577)
-..+++.|.++|.+-+.....+- ++-|+++++|+..+..++||.++....+.|++.-+...| |..
T Consensus 375 DK~Ii~~lk~~g~lv~~~~i~Hs--------------YPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn~~t~WVP~~ 440 (1070)
T KOG0434|consen 375 DKLIIRSLKASGRLVKASQITHS--------------YPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNNMKTHWVPQN 440 (1070)
T ss_pred hHHHHHHHHhcCceeeeeeeeec--------------cCceecCCChHHHhhccHhhhhHHHHHHHHHhcccccccCChh
Confidence 34577788888887766554432 456889999999999999999999999999887766664 666
Q ss_pred HHHH-HHHhhh
Q 008100 277 VKEM-QRNWIG 286 (577)
Q Consensus 277 ~~~~-~~~~i~ 286 (577)
+|.. -.|||.
T Consensus 441 ikeKRF~NWL~ 451 (1070)
T KOG0434|consen 441 IKEKRFANWLK 451 (1070)
T ss_pred hhHHHHHHHHh
Confidence 6543 348873
No 157
>COG3770 MepA Murein endopeptidase [Cell envelope biogenesis, outer membrane]
Probab=39.94 E-value=12 Score=37.32 Aligned_cols=12 Identities=50% Similarity=1.240 Sum_probs=10.1
Q ss_pred cCcCccccccce
Q 008100 496 ARQRYWGEPIPV 507 (577)
Q Consensus 496 SRQR~WG~PIPv 507 (577)
||+||||+|==|
T Consensus 69 ~rnR~~GHP~mi 80 (284)
T COG3770 69 SRNRYWGHPDMI 80 (284)
T ss_pred ccccccCChHHH
Confidence 899999999544
No 158
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=39.28 E-value=54 Score=34.67 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=36.5
Q ss_pred CCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCCC
Q 008100 105 PSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYD 182 (577)
Q Consensus 105 png~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~D 182 (577)
|+|. +||||..+.+.. ..+.+...|.++.+.. -|-|-+- ...++ +..++++.....++.++|+..+
T Consensus 12 PTG~-~HLGnylga~k~--~~~lq~~~~~~~~~~I-ADlHalt-------~~~~~-~~l~~~~~~~~~~~lA~GlDP~ 77 (332)
T PRK12556 12 PTGY-PHLGNYIGAIKP--ALQMAKNYEGKALYFI-ADYHALN-------AVHDP-EQFRSYTREVAATWLSLGLDPE 77 (332)
T ss_pred CCCc-chHHHHHHHHHH--HHHHHHhcCCeEEEEE-echhhcc-------CCCCH-HHHHHHHHHHHHHHhheeeccc
Confidence 5687 999997775332 2334444565453332 2333331 01122 2345566667788889999655
No 159
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=38.83 E-value=27 Score=32.79 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=55.6
Q ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCC---------CCCCCceeCCCh-hhHHHHHHHHHHH---HHCCceeeec
Q 008100 149 EQYAIETGTHPKITTLRNINRFRTQLKSLGFS---------YDWNREISTIEP-AYYKWTQWIFLQL---LKRGLAYQAE 215 (577)
Q Consensus 149 e~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~---------~Dw~~~~~T~d~-~~~~~v~~~f~~L---~~kGliy~~~ 215 (577)
|..|..+|+..+ .+.++...|...|+. --|-.++++.++ .-...+.+-+.++ .++-+-+...
T Consensus 32 EeLa~~Lgi~~~-----~VRk~L~~L~e~~Lv~~~r~r~~~~gw~~Y~w~i~~~~i~d~Ik~~~~~~~~~lk~~l~~e~~ 106 (158)
T TIGR00373 32 EEISLELGIKLN-----EVRKALYALYDAGLADYKRRKDDETGWYEYTWRINYEKALDVLKRKLEETAKKLREKLEFETN 106 (158)
T ss_pred HHHHHHHCCCHH-----HHHHHHHHHHHCCCceeeeeeecCCCcEEEEEEeCHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 444555555332 234444445555553 134444555554 2333333333333 2355666777
Q ss_pred cCcccCCCCCccCCchhhcc--CccccCCcCeEEE
Q 008100 216 VPVNWCPALGTVLANEEVVD--GVSERGGHPVIRK 248 (577)
Q Consensus 216 ~~v~wc~~~~t~Ls~~Ev~~--~~~~~~~~~~~~~ 248 (577)
..-+.||.|+.-++-.|..+ -.|+.||.+++..
T Consensus 107 ~~~Y~Cp~c~~r~tf~eA~~~~F~Cp~Cg~~L~~~ 141 (158)
T TIGR00373 107 NMFFICPNMCVRFTFNEAMELNFTCPRCGAMLDYL 141 (158)
T ss_pred CCeEECCCCCcEeeHHHHHHcCCcCCCCCCEeeec
Confidence 88889999999988888753 4799999986554
No 160
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=38.79 E-value=26 Score=37.82 Aligned_cols=40 Identities=23% Similarity=0.452 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCCceee-----------eeccCcccccCcCccccccce
Q 008100 468 ATSKVIEWAEKTGNGKKKV-----------NYKLRDWLFARQRYWGEPIPV 507 (577)
Q Consensus 468 a~~~ii~~l~~~g~~~~~~-----------~~~~~DWcISRQR~WG~PIPv 507 (577)
....+-+|+........-. ...++.=||+|-.-||+|+|+
T Consensus 207 l~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~pRCiTRDLkWGtpVPl 257 (567)
T KOG1247|consen 207 LEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKPRCITRDLKWGTPVPL 257 (567)
T ss_pred hHHHHHHHHHhccccCCCccchHHHHHHHHHccccccccccccccCCCcCh
Confidence 3456667887654322211 113678899999999999995
No 161
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=38.13 E-value=24 Score=32.62 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=44.2
Q ss_pred CCCceeCCCh-hhHHHHHHHHHHH---HHCCceeeeccCcccCCCCCccCCchhhcc-------CccccCCcCeEEE
Q 008100 183 WNREISTIEP-AYYKWTQWIFLQL---LKRGLAYQAEVPVNWCPALGTVLANEEVVD-------GVSERGGHPVIRK 248 (577)
Q Consensus 183 w~~~~~T~d~-~~~~~v~~~f~~L---~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~-------~~~~~~~~~~~~~ 248 (577)
|...|+.++. .....+.+-+.++ .++-+-+......+.||.|+...+..|... -.|+.||..++..
T Consensus 60 ~~~~yw~i~y~~~~~vik~r~~~~~~~L~~~l~~e~~~~~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 60 WYRYYWYINYDTLLDVVKYKLDKMRKRLEDKLEDETNNAYYKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEELEED 136 (147)
T ss_pred EEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHhcccCCcEEECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEEEEc
Confidence 5566777774 3334444444444 356677888889999999998887766532 3588999876543
No 162
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=36.12 E-value=43 Score=36.16 Aligned_cols=77 Identities=21% Similarity=0.238 Sum_probs=38.9
Q ss_pred cEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHH
Q 008100 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQL 174 (577)
Q Consensus 95 ~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l 174 (577)
++.++.|. -|+|. +||||..-. .--+.++ .-.|++|.+..+ |-|.+-. ...|.++. ..+.....+...+
T Consensus 66 ~~~v~~G~-~PTG~-lHLG~g~i~--~~~~~~l-q~~G~~v~~~Ia-D~hA~~~----~~~g~~l~-~i~~~~~~~~~~~ 134 (383)
T PTZ00126 66 RPICYDGF-EPSGR-MHIAQGILK--AINVNKL-TKAGCVFVFWVA-DWFALLN----NKMGGDLE-KIRKVGEYFIEVW 134 (383)
T ss_pred CCEEEEEE-CCCCc-ccccchHhH--hHHHHHH-HhCCCeEEEEEc-cceeecC----CCCCCCHH-HHHHHHHHHHHHH
Confidence 34455453 36777 999993211 1122333 345888865554 2222200 01122222 2344455667788
Q ss_pred HHhCCCCC
Q 008100 175 KSLGFSYD 182 (577)
Q Consensus 175 ~~lGi~~D 182 (577)
..+|+..+
T Consensus 135 ~A~GlDp~ 142 (383)
T PTZ00126 135 KAAGMDMD 142 (383)
T ss_pred HHhCCCcc
Confidence 99998655
No 163
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=33.71 E-value=53 Score=31.51 Aligned_cols=44 Identities=14% Similarity=0.131 Sum_probs=34.1
Q ss_pred HCCceeeeccCcccCCCCCccCCchhhcc--CccccCCcCeEEEec
Q 008100 207 KRGLAYQAEVPVNWCPALGTVLANEEVVD--GVSERGGHPVIRKPM 250 (577)
Q Consensus 207 ~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~--~~~~~~~~~~~~~~~ 250 (577)
++-+-+......|.||.|+.-++-.|..+ -.|+.||.+++...-
T Consensus 106 k~~l~~e~~~~~Y~Cp~C~~rytf~eA~~~~F~Cp~Cg~~L~~~dn 151 (178)
T PRK06266 106 KEQLEEEENNMFFFCPNCHIRFTFDEAMEYGFRCPQCGEMLEEYDN 151 (178)
T ss_pred HHHhhhccCCCEEECCCCCcEEeHHHHhhcCCcCCCCCCCCeeccc
Confidence 45566777788899999999888888753 379999998766543
No 164
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=33.45 E-value=52 Score=35.42 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=39.8
Q ss_pred EEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCccccccc--ChHHHHHHHHhCCCchhhHHHHHHHHHHH
Q 008100 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAF--GLPAEQYAIETGTHPKITTLRNINRFRTQ 173 (577)
Q Consensus 96 f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~--Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (577)
+.++.|.= |+|+.|||||... .-.+.++++ .|++|.+..|=-+. |.|.-. .........+.+.++.+.++.+
T Consensus 31 ~~vy~G~d-PTg~~lHlGh~v~---l~~l~~lq~-~G~~~~iligd~ta~igdpsg~-~~~R~~~~~~~i~~n~~~i~~~ 104 (377)
T TIGR00234 31 IKLYVGFD-PTAPSLHLGHLVP---LLKLRDFQQ-AGHEVIVLLGDATALIGDPSGK-SEERKLLTREEVQENAENIKKQ 104 (377)
T ss_pred CEEEEeeC-CCCCCccHHHHHH---HHHHHHHHH-CCCcEEEEEeccchhhcCCCCh-HHHhhcCCHHHHHHHHHHHHHH
Confidence 45555543 5662299999774 233445554 79999777652211 223211 1111222344556666665555
Q ss_pred HHHhCCC
Q 008100 174 LKSLGFS 180 (577)
Q Consensus 174 l~~lGi~ 180 (577)
+ ..|+.
T Consensus 105 l-a~gld 110 (377)
T TIGR00234 105 I-ARFLD 110 (377)
T ss_pred H-HHhCC
Confidence 4 45553
No 165
>PRK11032 hypothetical protein; Provisional
Probab=30.87 E-value=47 Score=31.33 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=10.8
Q ss_pred cccCCCCC-Cccccc
Q 008100 553 TTEHSSGK-PARRET 566 (577)
Q Consensus 553 ~~~~~~g~-~~~R~t 566 (577)
++||+||+ .|+|.+
T Consensus 143 ~pCp~C~~~~F~R~~ 157 (160)
T PRK11032 143 PLCPKCGHDQFQRRP 157 (160)
T ss_pred CCCCCCCCCeeeeCC
Confidence 37999996 678865
No 166
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=29.90 E-value=90 Score=33.85 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=42.5
Q ss_pred CCCCCCCCcchhhHhHHHHHHHHHHH-HcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCCC
Q 008100 104 YPSGAGLHVGHPLGYTATDILARLKR-MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYD 182 (577)
Q Consensus 104 ypng~~LHiGHa~~~v~~Dvi~Ry~r-m~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~D 182 (577)
-|+|. +||||.++.+ + .|.. ..|+++. ++=-|-|-+-. ...+ .+...++...+...+.++|+..+
T Consensus 10 qPSG~-~HLGnylG~i-k----~wv~lq~~~~~~-~~IADlHAlt~------~~~d-~~~ir~~~~~~~a~~lA~GlDP~ 75 (398)
T PRK12283 10 RPTGR-LHLGHYHGVL-K----NWVKLQHEYECF-FFVADWHALTT------HYET-PEVIEKNVWDMVIDWLAAGVDPA 75 (398)
T ss_pred CCCCc-chHHHHHHHH-H----HHHHHhcCCcEE-EEeecHHHHhC------CCCC-HHHHHHHHHHHHHHHHHcCCCcc
Confidence 36787 9999998843 3 3333 3466653 33344443210 0112 23455566678889999999766
Q ss_pred CCCceeCCC-hhh
Q 008100 183 WNREISTIE-PAY 194 (577)
Q Consensus 183 w~~~~~T~d-~~~ 194 (577)
=...|.-++ ++|
T Consensus 76 k~~if~QS~v~eh 88 (398)
T PRK12283 76 QATLFIQSKVPEH 88 (398)
T ss_pred ceEEEECCCchHH
Confidence 223343333 444
No 167
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=28.79 E-value=31 Score=24.51 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=11.6
Q ss_pred ccceEEECCCCeee
Q 008100 504 PIPVVFLDGTGETV 517 (577)
Q Consensus 504 PIPv~~~~~~g~~~ 517 (577)
-+|+|+|..||+.+
T Consensus 29 ~vp~~~C~~CGE~~ 42 (46)
T TIGR03831 29 NVPALVCPQCGEEY 42 (46)
T ss_pred CCCccccccCCCEe
Confidence 47999999999865
No 168
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=28.39 E-value=33 Score=21.36 Aligned_cols=21 Identities=19% Similarity=0.588 Sum_probs=13.1
Q ss_pred cCCCCCccCCchhhccCccccCCc
Q 008100 220 WCPALGTVLANEEVVDGVSERGGH 243 (577)
Q Consensus 220 wc~~~~t~Ls~~Ev~~~~~~~~~~ 243 (577)
+||.|+..+++... .+..+|+
T Consensus 1 ~Cp~CG~~~~~~~~---fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIEDDAK---FCPNCGT 21 (23)
T ss_pred CCcccCCCCCCcCc---chhhhCC
Confidence 57888887765433 3555554
No 169
>PF01783 Ribosomal_L32p: Ribosomal L32p protein family; InterPro: IPR002677 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L32p is part of the 50S ribosomal subunit. This family is found in both prokaryotes and eukaryotes. Ribosomal protein L32 of yeast binds to and regulates the splicing and the translation of the transcript of its own gene [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3PYT_2 3F1F_5 3PYV_2 3D5B_5 3MRZ_2 3D5D_5 3F1H_5 1VSP_Y 3PYR_2 3MS1_2 ....
Probab=28.31 E-value=86 Score=23.98 Aligned_cols=16 Identities=13% Similarity=0.069 Sum_probs=10.7
Q ss_pred ccCCCCCCcccccCcccc
Q 008100 554 TEHSSGKPARRETSTMPQ 571 (577)
Q Consensus 554 ~~~~~g~~~~R~tDtmD~ 571 (577)
.|+.|| |.++..++++
T Consensus 41 vc~~cG--~y~~r~v~~~ 56 (56)
T PF01783_consen 41 VCPSCG--YYKGRQVIEV 56 (56)
T ss_dssp BCTTTB--BSSSSSSST-
T ss_pred eeCCCC--eECCEEEeeC
Confidence 577776 7777777664
No 170
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=27.52 E-value=33 Score=35.28 Aligned_cols=41 Identities=29% Similarity=0.495 Sum_probs=25.9
Q ss_pred CcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCccc
Q 008100 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMG 140 (577)
Q Consensus 94 ~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G 140 (577)
+++.++.|. -|+|. |||||.... ..+.++++ .|++|.+..|
T Consensus 4 ~~~~~y~G~-~PTg~-lHlG~l~~~---~~~~~lq~-~g~~~~i~ia 44 (292)
T PF00579_consen 4 KPFRVYTGI-DPTGD-LHLGHLVPI---MKLIWLQK-AGFKVIILIA 44 (292)
T ss_dssp SSEEEEEEE-ESSSS--BHHHHHHH---HHHHHHHH-TTSEEEEEEE
T ss_pred CCcEEEEeE-CCCCc-ccchHHHHH---HHHHHHHh-cCCccceEec
Confidence 345555554 36787 999987664 33444444 8999987766
No 171
>COG3171 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.69 E-value=1.1e+02 Score=27.02 Aligned_cols=50 Identities=20% Similarity=0.388 Sum_probs=40.3
Q ss_pred HHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHC-CceeeeccCccc
Q 008100 171 RTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKR-GLAYQAEVPVNW 220 (577)
Q Consensus 171 ~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~k-Gliy~~~~~v~w 220 (577)
...|+.||+++.|.-.--|......+.+..++.++.+. |+.|-+..-..|
T Consensus 23 l~EFQeLgF~v~~~~~eg~~ae~~dea~drFidevI~~Ngl~~~G~~~~~~ 73 (119)
T COG3171 23 LGEFQELGFSVQWSFHEGTSAEDVDEAVDRFIDEVIAPNGLAFAGSGYLDW 73 (119)
T ss_pred HHHHHhhheeeEEEecCCccHHHHHHHHHHHHHHHHccCceeEcCCcceee
Confidence 35688999999998777777777888888888887765 999999876655
No 172
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=24.08 E-value=50 Score=25.27 Aligned_cols=18 Identities=17% Similarity=0.049 Sum_probs=12.2
Q ss_pred ccccccceE-EECCCCeee
Q 008100 500 YWGEPIPVV-FLDGTGETV 517 (577)
Q Consensus 500 ~WG~PIPv~-~~~~~g~~~ 517 (577)
.|+..+|.+ .|..||++.
T Consensus 18 ~~kl~~p~l~~C~~cG~~~ 36 (55)
T TIGR01031 18 DAKLTAPTLVVCPNCGEFK 36 (55)
T ss_pred cccccCCcceECCCCCCcc
Confidence 376777665 577888754
No 173
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.60 E-value=31 Score=28.13 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=15.2
Q ss_pred cccCCCCCCcccccCcccccc-cCCC
Q 008100 553 TTEHSSGKPARRETSTMPQWA-GSCW 577 (577)
Q Consensus 553 ~~~~~~g~~~~R~tDtmD~Wf-dSsW 577 (577)
+.|+.||+.++|.-.-.-+=| +|+|
T Consensus 34 t~ce~c~a~~kk~l~~vgi~fKGSGf 59 (82)
T COG2331 34 TTCEECGARLKKLLNAVGIVFKGSGF 59 (82)
T ss_pred ccChhhChHHHHhhccceEEEecceE
Confidence 579999988877543333223 5554
No 174
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=20.28 E-value=2.3e+02 Score=28.28 Aligned_cols=98 Identities=13% Similarity=0.150 Sum_probs=51.2
Q ss_pred CCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh---CC
Q 008100 103 PYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSL---GF 179 (577)
Q Consensus 103 Pypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~l---Gi 179 (577)
+.++|. +++.+-.. -+..+ .+..+..|-+|....|-...+.... +. ......+++++.+.+.+++. ||
T Consensus 33 i~~~G~-l~~~~~~~-~~~~~-~~~~~~~~~kvl~sigg~~~~~~~~--~~----~~~~~r~~fi~~lv~~~~~~~~DGI 103 (253)
T cd06545 33 PDANGT-LNANPVRS-ELNSV-VNAAHAHNVKILISLAGGSPPEFTA--AL----NDPAKRKALVDKIINYVVSYNLDGI 103 (253)
T ss_pred ECCCCe-EEecCcHH-HHHHH-HHHHHhCCCEEEEEEcCCCCCcchh--hh----cCHHHHHHHHHHHHHHHHHhCCCce
Confidence 456776 77653211 12222 3344457888876555333221111 11 11223344555555556665 77
Q ss_pred CCCCCCceeCCChhhHHHHHHHHHHHHHCCc
Q 008100 180 SYDWNREISTIEPAYYKWTQWIFLQLLKRGL 210 (577)
Q Consensus 180 ~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGl 210 (577)
.+||+....+ ...|..++.++-..|.+.|+
T Consensus 104 diDwE~~~~~-~~~~~~fv~~Lr~~l~~~~~ 133 (253)
T cd06545 104 DVDLEGPDVT-FGDYLVFIRALYAALKKEGK 133 (253)
T ss_pred eEEeeccCcc-HhHHHHHHHHHHHHHhhcCc
Confidence 8999876543 34667777666666665554
No 175
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.16 E-value=94 Score=21.47 Aligned_cols=13 Identities=31% Similarity=0.279 Sum_probs=10.5
Q ss_pred cccCCCCCCcccc
Q 008100 553 TTEHSSGKPARRE 565 (577)
Q Consensus 553 ~~~~~~g~~~~R~ 565 (577)
..||.||+.++|.
T Consensus 27 ~~CP~Cg~~~~r~ 39 (41)
T smart00834 27 ATCPECGGDVRRL 39 (41)
T ss_pred CCCCCCCCcceec
Confidence 5799999987774
Done!