Query 008100
Match_columns 577
No_of_seqs 342 out of 2935
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 18:08:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4arc_A Leucine--tRNA ligase; l 100.0 3E-119 9E-124 1036.9 38.7 496 60-577 21-518 (880)
2 2v0c_A Aminoacyl-tRNA syntheta 100.0 7E-118 2E-122 1032.0 37.8 501 63-577 3-506 (878)
3 1ffy_A Isoleucyl-tRNA syntheta 100.0 3.9E-97 1E-101 862.0 3.7 461 60-575 14-531 (917)
4 1ile_A Ilers, isoleucyl-tRNA s 100.0 6.1E-94 2.1E-98 831.5 16.2 435 62-577 6-523 (821)
5 1gax_A Valrs, valyl-tRNA synth 100.0 1.3E-91 4.6E-96 809.3 29.6 383 60-576 3-460 (862)
6 1wz2_A Leucyl-tRNA synthetase; 100.0 2.6E-79 8.9E-84 718.3 22.9 360 62-480 2-435 (967)
7 1wkb_A Leucyl-tRNA synthetase; 100.0 3.4E-76 1.2E-80 683.4 27.3 361 62-481 2-436 (810)
8 3u1f_A Methionyl-tRNA syntheta 100.0 6.3E-40 2.1E-44 364.4 13.7 194 91-287 6-211 (542)
9 1rqg_A Methionyl-tRNA syntheta 100.0 2.5E-39 8.6E-44 369.1 17.3 191 94-287 2-222 (722)
10 3o0a_A Leucyl-tRNA synthetase 100.0 3.2E-38 1.1E-42 309.1 16.2 197 286-490 1-219 (219)
11 2ajg_A Leucyl-tRNA synthetase; 100.0 1.7E-36 6E-41 292.9 16.2 185 288-485 10-195 (196)
12 2csx_A Methionyl-tRNA syntheta 100.0 7.4E-36 2.5E-40 328.2 11.9 191 93-286 4-198 (497)
13 2x1l_A Methionyl-tRNA syntheta 100.0 1.8E-35 6.2E-40 327.2 14.5 193 91-286 9-209 (524)
14 2d5b_A Methionyl-tRNA syntheta 100.0 2.3E-35 7.9E-40 324.6 15.2 190 94-286 3-195 (500)
15 3h99_A Methionyl-tRNA syntheta 100.0 3.5E-35 1.2E-39 327.2 15.8 196 89-287 13-237 (560)
16 1wny_A Isoleucyl-tRNA syntheta 100.0 2.6E-34 8.9E-39 275.5 10.3 176 287-487 2-182 (186)
17 3kfl_A Methionyl-tRNA syntheta 100.0 6.5E-34 2.2E-38 316.8 12.7 201 81-286 15-227 (564)
18 4dlp_A Aminoacyl-tRNA syntheta 100.0 1.9E-33 6.6E-38 311.6 14.7 192 92-286 23-221 (536)
19 1wka_A Valyl-tRNA synthetase; 100.0 8.2E-33 2.8E-37 254.9 13.9 142 288-487 4-145 (147)
20 2wfd_A Leucyl-tRNA synthetase, 100.0 1.7E-29 5.7E-34 252.9 13.0 185 292-483 9-248 (252)
21 2wfg_A Cytosolic leucyl-tRNA s 100.0 2.2E-29 7.6E-34 252.9 10.8 175 306-487 32-251 (261)
22 3pz6_A Leurs, leucyl-tRNA synt 100.0 1.1E-28 3.7E-33 247.7 9.6 171 306-483 79-302 (311)
23 3tqo_A Cysteinyl-tRNA syntheta 99.9 3.5E-23 1.2E-27 222.9 10.9 136 82-226 17-153 (462)
24 3sp1_A Cysteinyl-tRNA syntheta 99.9 5.4E-23 1.8E-27 222.5 7.7 127 93-225 42-178 (501)
25 3c8z_A Cysteinyl-tRNA syntheta 99.8 4.8E-21 1.6E-25 205.5 10.8 124 92-222 38-166 (414)
26 1li5_A Cysrs, cysteinyl-tRNA s 99.8 1.5E-19 5.1E-24 196.1 9.8 134 82-225 14-149 (461)
27 1irx_A Lysyl-tRNA synthetase; 99.5 4.6E-15 1.6E-19 163.6 -0.6 112 96-212 21-151 (523)
28 2zue_A Arginyl-tRNA synthetase 99.4 2.9E-13 9.9E-18 151.9 9.4 133 93-228 118-312 (629)
29 1iq0_A Arginyl-tRNA synthetase 99.4 4.9E-13 1.7E-17 149.4 9.3 129 95-227 104-281 (592)
30 1f7u_A Arginyl-tRNA synthetase 99.2 2.3E-11 7.9E-16 135.7 10.7 124 93-221 142-325 (607)
31 3fnr_A Arginyl-tRNA synthetase 99.0 1.4E-09 4.9E-14 117.5 14.3 122 94-220 30-197 (464)
32 1nzj_A Hypothetical protein YA 98.3 4.6E-07 1.6E-11 92.4 6.5 90 102-214 11-101 (298)
33 3aii_A Glutamyl-tRNA synthetas 98.1 2E-06 6.9E-11 93.8 6.8 93 98-213 98-190 (553)
34 1qtq_A GLNRS, protein (glutami 98.1 3.7E-06 1.3E-10 91.7 7.6 91 101-213 31-121 (553)
35 2o5r_A Glutamyl-tRNA synthetas 98.1 6.7E-06 2.3E-10 89.2 8.6 95 96-213 13-116 (481)
36 3al0_C Glutamyl-tRNA(Gln) amid 98.0 1.1E-05 3.8E-10 89.5 8.8 92 100-214 133-233 (592)
37 2hz7_A Glutaminyl-tRNA synthet 98.0 9.3E-06 3.2E-10 92.5 7.6 94 98-214 68-162 (851)
38 2cfo_A Glutamyl-tRNA synthetas 97.8 1.8E-05 6.1E-10 85.9 7.1 89 102-213 7-96 (492)
39 4g6z_A Glutamate-tRNA ligase; 97.8 2.2E-05 7.5E-10 84.9 7.6 90 102-214 31-121 (490)
40 3afh_A Glutamyl-tRNA synthetas 97.6 0.00012 4.2E-09 79.3 8.5 92 100-214 29-129 (488)
41 1j09_A Glutamyl-tRNA synthetas 97.5 8.6E-05 3E-09 80.1 6.6 92 102-214 7-105 (468)
42 2ja2_A Glutamyl-tRNA synthetas 97.5 0.00022 7.5E-09 77.4 8.5 89 102-213 12-109 (498)
43 4gri_A Glutamate--tRNA ligase; 97.4 0.00022 7.5E-09 78.0 7.9 92 102-214 30-128 (512)
44 1rqg_A Methionyl-tRNA syntheta 97.2 5.4E-05 1.8E-09 86.3 0.7 28 489-516 223-250 (722)
45 3kfl_A Methionyl-tRNA syntheta 97.1 5.1E-05 1.7E-09 84.2 -1.3 18 489-506 229-250 (564)
46 2x1l_A Methionyl-tRNA syntheta 96.4 0.00062 2.1E-08 74.7 0.7 18 489-506 211-229 (524)
47 3u1f_A Methionyl-tRNA syntheta 96.3 0.00074 2.5E-08 74.3 0.2 20 489-508 212-235 (542)
48 4dlp_A Aminoacyl-tRNA syntheta 95.9 0.0016 5.6E-08 71.5 0.8 18 489-506 223-241 (536)
49 2d5b_A Methionyl-tRNA syntheta 95.3 0.0035 1.2E-07 68.1 0.6 19 489-507 197-218 (500)
50 3h99_A Methionyl-tRNA syntheta 95.2 0.0041 1.4E-07 68.7 0.8 18 489-506 238-256 (560)
51 2csx_A Methionyl-tRNA syntheta 94.8 0.0056 1.9E-07 66.6 0.3 19 489-507 200-221 (497)
52 1ile_A Ilers, isoleucyl-tRNA s 89.7 0.1 3.5E-06 60.2 1.7 77 196-286 361-439 (821)
53 1wkb_A Leucyl-tRNA synthetase; 88.9 0.11 3.7E-06 59.9 1.2 51 236-286 447-501 (810)
54 3tzl_A Tryptophanyl-tRNA synth 87.8 0.3 1E-05 49.9 3.5 64 105-182 12-75 (322)
55 3hv0_A Tryptophanyl-tRNA synth 87.6 1.5 5.1E-05 45.9 8.8 89 93-194 72-160 (393)
56 3foc_A Tryptophanyl-tRNA synth 86.1 1.5 5.1E-05 46.7 7.9 120 52-182 31-167 (451)
57 1gax_A Valrs, valyl-tRNA synth 85.8 0.48 1.7E-05 54.8 4.2 77 196-286 316-395 (862)
58 2dlc_X Tyrosyl-tRNA synthetase 85.1 1.9 6.6E-05 45.1 8.1 78 94-186 38-119 (394)
59 2cyb_A Tyrosyl-tRNA synthetase 84.8 1.9 6.6E-05 43.8 7.8 75 96-186 33-107 (323)
60 1ffy_A Isoleucyl-tRNA syntheta 84.0 0.36 1.2E-05 56.2 2.1 53 235-287 394-447 (917)
61 3hzr_A Tryptophanyl-tRNA synth 82.8 2.6 8.9E-05 44.0 7.8 89 93-196 80-168 (386)
62 1i6k_A TRPRS, tryptophanyl-tRN 81.3 0.93 3.2E-05 46.3 3.7 66 105-186 10-75 (328)
63 2cya_A Tyrosyl-tRNA synthetase 80.6 1.6 5.4E-05 45.3 5.2 75 96-182 36-110 (364)
64 3jxe_A Tryptophanyl-tRNA synth 80.4 2.9 0.0001 43.7 7.2 77 94-182 72-148 (392)
65 2ip1_A Tryptophanyl-tRNA synth 79.1 2.2 7.5E-05 45.2 5.8 79 93-182 100-178 (432)
66 1r6t_A Tryptophanyl-tRNA synth 78.2 2.3 7.9E-05 45.7 5.7 78 93-182 153-230 (477)
67 3i05_A Tryptophanyl-tRNA synth 76.2 6.6 0.00023 41.0 8.3 77 93-182 76-153 (395)
68 1wz2_A Leucyl-tRNA synthetase; 76.0 0.98 3.4E-05 52.9 2.2 52 235-286 446-501 (967)
69 2zp1_A Tyrosyl-tRNA synthetase 75.8 3.4 0.00012 41.8 5.9 72 95-180 28-99 (314)
70 3a04_A Tryptophanyl-tRNA synth 74.1 3.5 0.00012 42.8 5.6 77 93-182 68-144 (372)
71 3tze_A Tryptophanyl-tRNA synth 73.9 4.6 0.00016 42.4 6.4 77 93-182 99-176 (406)
72 1r6u_A Tryptophanyl-tRNA synth 73.9 4.5 0.00015 42.9 6.4 78 93-182 106-183 (437)
73 3vgj_A Tyrosyl-tRNA synthetase 69.0 4 0.00014 42.3 4.6 74 97-182 58-132 (373)
74 2g36_A Tryptophanyl-tRNA synth 68.8 4.6 0.00016 41.3 5.0 65 105-181 21-85 (340)
75 3prh_A Tryptophanyl-tRNA synth 68.5 2.8 9.4E-05 43.8 3.3 74 94-182 30-107 (388)
76 2el7_A Tryptophanyl-tRNA synth 67.5 4.9 0.00017 41.1 4.9 66 105-181 10-76 (337)
77 3sz3_A Tryptophanyl-tRNA synth 65.0 3.4 0.00012 42.3 3.1 64 105-182 15-78 (341)
78 2j5b_A Tyrosyl-tRNA synthetase 64.8 6.9 0.00024 40.1 5.4 77 95-182 40-116 (348)
79 1n3l_A Tyrosyl-tRNA synthetase 63.2 3.8 0.00013 42.5 3.0 38 97-140 37-74 (372)
80 3p0j_A Tyrosyl-tRNA synthetase 58.3 8.8 0.0003 43.1 5.1 76 95-182 40-116 (690)
81 1y42_X Tyrosyl-tRNA synthetase 58.3 13 0.00043 38.9 6.0 77 96-178 65-143 (392)
82 3n9i_A Tryptophanyl-tRNA synth 53.2 6.3 0.00022 40.4 2.6 65 104-182 23-87 (346)
83 1yi8_B Tryptophanyl-tRNA synth 51.1 9.6 0.00033 39.1 3.6 76 95-186 22-97 (351)
84 2yy5_A Tryptophanyl-tRNA synth 48.8 16 0.00056 37.3 4.9 71 97-182 6-76 (348)
85 2cyc_A Tyrosyl-tRNA synthetase 44.9 19 0.00064 37.3 4.7 75 97-182 35-114 (375)
86 1h3f_A Tyrosyl-tRNA synthetase 38.0 15 0.00052 38.7 2.7 78 95-180 37-117 (432)
87 3a43_A HYPD, hydrogenase nicke 37.6 23 0.00079 31.2 3.5 39 506-561 69-116 (139)
88 1jil_A Tyrrs, tyrosyl-tRNA syn 37.6 17 0.00059 38.2 3.0 76 96-177 33-110 (420)
89 3v2d_5 50S ribosomal protein L 34.1 25 0.00085 26.4 2.6 16 554-571 45-60 (60)
90 1lko_A Rubrerythrin all-iron(I 28.3 33 0.0011 31.8 3.0 52 192-244 129-180 (191)
91 2pid_A Tyrosyl-tRNA synthetase 26.5 39 0.0013 34.6 3.4 75 96-177 47-124 (356)
92 2yxn_A Tyrosyl-tRNA synthetase 25.3 35 0.0012 34.4 2.8 75 96-177 34-111 (322)
93 2ts1_A Tyrosyl-tRNA synthetase 25.0 41 0.0014 35.3 3.3 77 97-179 32-111 (419)
94 8tfv_A Protein (thanatin); bac 24.8 26 0.00089 19.8 0.9 10 503-512 4-13 (21)
95 2jan_A Tyrosyl-tRNA synthetase 24.1 42 0.0014 35.3 3.2 75 97-177 34-109 (432)
96 4ayb_P DNA-directed RNA polyme 23.5 49 0.0017 23.5 2.3 31 218-248 3-36 (48)
97 3p0j_A Tyrosyl-tRNA synthetase 22.7 78 0.0027 35.4 5.1 67 105-180 390-457 (690)
No 1
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=2.8e-119 Score=1036.94 Aligned_cols=496 Identities=47% Similarity=0.842 Sum_probs=411.3
Q ss_pred cccCCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcc
Q 008100 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (577)
Q Consensus 60 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~ 139 (577)
|.+.|||.++|++||++|+++++|++.. +.++++||+++|||||||. |||||+++++++|+++||+||+||+|++++
T Consensus 21 m~~~y~~~~iE~kw~~~W~~~~~f~~~~--~~~~~~~~v~~~~PypnG~-lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~ 97 (880)
T 4arc_A 21 MQEQYRPEEIESKVQLHWDEKRTFEVTE--DESKEKYYCLSMLPYPSGR-LHMGHVRNYTIGDVIARYQRMLGKNVLQPI 97 (880)
T ss_dssp CCSSCCHHHHHHHHHHHHHHTTTTCCCC--CTTSCEEEEEECCCCCCSS-CCHHHHHHHHHHHHHHHHHHHTTCEEECCC
T ss_pred ccccCChHHHHHHHHHHHHhcCCcccCC--cCCCCCEEEEcCCCCCCCC-cchhhhHHHHHHHHHHHHHHHcCCceEEec
Confidence 6788999999999999999999999763 4578899999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcc
Q 008100 140 GWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVN 219 (577)
Q Consensus 140 G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~ 219 (577)
|||+||+|||.+|++.|+.+++++.++++.|++||++||+++||+++++|+|+.|++.++++|.+|+++|+||++.++|+
T Consensus 98 G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~ 177 (880)
T 4arc_A 98 GWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVN 177 (880)
T ss_dssp EECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC-
T ss_pred CccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCC-CCCHHHHHHHHHhhhccCCceEEEEee
Q 008100 220 WCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDL-DWPESVKEMQRNWIGRSEGAEMDFRVL 298 (577)
Q Consensus 220 wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~-~~p~~~~~~~~~~i~~~~~~~~~f~l~ 298 (577)
|||.|+|+||++||++|+|++||.+++.++++||||+|++|+++|+++++.+ .||++++.||+||||++.|++++|++.
T Consensus 178 wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~~wig~s~g~~v~f~~~ 257 (880)
T 4arc_A 178 WCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVN 257 (880)
T ss_dssp -----------------------------CEEEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHHHHHCEEEEEEEEEEET
T ss_pred ecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHHHhhcccccHHHHHHHHhhhccccceEEEEEec
Confidence 9999999999999999999999999999999999999999999999999987 599999999999999999999999996
Q ss_pred cCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchhhhhhhhcccccccceEEe
Q 008100 299 DSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYAR 378 (577)
Q Consensus 299 ~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 378 (577)
+. +.+|+|||||||||+|++||||||+++|+..++..+ ..+++|+..+...+..+......++.|.++|.++.
T Consensus 258 ~~-----~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 330 (880)
T 4arc_A 258 DY-----DNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENN--PELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAV 330 (880)
T ss_dssp TC-----SSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGC--HHHHHHHTC----------------CEEEEEEEEE
T ss_pred CC-----CceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcCh--HHHHHHHHHHhccCchhhhhccceeeccccCcEEe
Confidence 42 468999999999999999999999999988776432 23455544333222222222233567889999999
Q ss_pred cCCCCCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCC-CccccccccccceEeccCccccc
Q 008100 379 NPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDES-SSQSEKAYTGEGLIVNSSNLISG 457 (577)
Q Consensus 379 ~P~~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~-~~~~~~~~~~~g~~v~~~~~~~~ 457 (577)
||++++.+||+.++||++++|||+||+|||||++||++|++||||++++|++.++. .....+.|.+.|.++++.
T Consensus 331 ~P~~~~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~ns~----- 405 (880)
T 4arc_A 331 HPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSG----- 405 (880)
T ss_dssp CTTTCCEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBCSSG-----
T ss_pred cCCCCCEeEEEEeCccccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCceeecCc-----
Confidence 99999999999999999999999999999999999999999999999999865331 111235688888887654
Q ss_pred cccCCCCHHHHHHHHHHHHHhcCCCceeeeeccCcccccCcCccccccceEEECCCCeeeecCCCCCCCCCCCCCCcCCC
Q 008100 458 LDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPT 537 (577)
Q Consensus 458 ~~~~g~~~~~a~~~ii~~l~~~g~~~~~~~~~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~~l~~~l~~~~~~~~~ 537 (577)
.++||...+|+.+|+++|.+.|.+.+.++|++||||||||||||+|||||||++|| .+++++++||+.||+...+ .
T Consensus 406 -~~~Gl~~~eA~~~ii~~L~~~g~~~~~v~yrlrDW~iSRQRyWG~PIPi~~c~~cg-~v~v~~~~Lpv~lp~~~~~--~ 481 (880)
T 4arc_A 406 -EFNGLDHEAAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGT-VMPTPDDQLPVILPEDVVM--D 481 (880)
T ss_dssp -GGTTCCHHHHHHHHHHHHHHTTSEEEEEEESCCCEECEESCSSSCBCCEEEETTSC-EEECCGGGCSCCCCSSCCC--C
T ss_pred -ccCCCCHHHHHHHHHHHHHHcCCcceeEEEEcccceeeeeeccCCcceEEEECCCC-eEeCChHHCccccchhccc--C
Confidence 59999999999999999999999999999999999999999999999999999998 5678999999999974334 4
Q ss_pred CCCCCcCccCccccccccCCCCCCcccccCcccccccCCC
Q 008100 538 GTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW 577 (577)
Q Consensus 538 G~~~~~l~~~~~~v~~~~~~~g~~~~R~tDtmD~WfdSsW 577 (577)
|.+ +||..+.+|+.++|| |+.++||||||||||||||
T Consensus 482 ~~g-~pl~~~~~w~~~~cp--g~~~~retDtmDtw~dSsw 518 (880)
T 4arc_A 482 GIT-SPIKADPEWAKTTVN--GMPALRETDTFDTFMESSW 518 (880)
T ss_dssp SSS-CHHHHSTTTTEEESS--SSEEEECCCEECTTTGGGT
T ss_pred CCC-CchHhCccceeeccC--CCcceeCCCcCCCcccCcH
Confidence 444 689889999999998 8889999999999999999
No 2
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=7.3e-118 Score=1032.02 Aligned_cols=501 Identities=52% Similarity=0.959 Sum_probs=452.8
Q ss_pred CCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCccccc
Q 008100 63 AYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWD 142 (577)
Q Consensus 63 ~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D 142 (577)
+|||+++|++||++|+++++|++.. .+.++++||+++|||||||. |||||+++++++|+++||+||+||+|++++|||
T Consensus 3 ~y~~~~iE~kw~~~W~~~~~f~~~~-~~~~~~k~~v~~~~Py~nG~-lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D 80 (878)
T 2v0c_A 3 KYNPHAIEAKWQRFWEEKGFMKAKD-LPGGRGKQYVLVMFPYPSGD-LHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWD 80 (878)
T ss_dssp CCCCTTHHHHHHHHHHHHTTTCCCS-CCC---EEEEEECCCCCSSC-CBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBC
T ss_pred CCCHHHHHHHHHHHHHHcCCcccCc-ccCCCCCEEEECCCCCCCCC-cchhhhHHHHHHHHHHHHHHhcCCceEeecccC
Confidence 7999999999999999999999874 24567889999999999998 999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCC
Q 008100 143 AFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCP 222 (577)
Q Consensus 143 ~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~ 222 (577)
|||+|||.+|++.|+.+.+++.++++.|+++|++||+++||+++|+|+++.|++.++++|.+|+++|+||++.++|+|||
T Consensus 81 ~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p 160 (878)
T 2v0c_A 81 AFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCP 160 (878)
T ss_dssp CSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEET
T ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCchhhccCcccc-CCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHHHHhhhccCCceEEEEeecCC
Q 008100 223 ALGTVLANEEVVDGVSER-GGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSD 301 (577)
Q Consensus 223 ~~~t~Ls~~Ev~~~~~~~-~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~~~~~~~~f~l~~~~ 301 (577)
.|+|+||++||+++.|++ ||++++.++++||||+|++|+++|+++++.+.||+++++||+||||++.|++++|++.+.
T Consensus 161 ~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~~s~g~~v~f~~~~~- 239 (878)
T 2v0c_A 161 KCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGK- 239 (878)
T ss_dssp TTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHCEEEEEEEEEEBTTS-
T ss_pred CCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHhccccCceEEEEecCC-
Confidence 999999999999999999 999999999999999999999999999998889999999999999999999999998642
Q ss_pred CCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchhhhhhhhcccccccceEEecCC
Q 008100 302 GQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPA 381 (577)
Q Consensus 302 ~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~ 381 (577)
+.+|+||||||||||||+||||||+++|+..++..+....+++|+..+.....++......++.|.|+|.++.||+
T Consensus 240 ----~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~P~ 315 (878)
T 2v0c_A 240 ----EVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPA 315 (878)
T ss_dssp ----SCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGGHHHHHHHHHHHHTSCHHHHHCSSSCCCCEEEEEEEECTT
T ss_pred ----CceEEEEeCCchhhhCcEEEEEcCCCeeeehhccchhHHHHHHHHHHHhhhhhhhhhhccceeeeEecCcEEECCC
Confidence 4689999999999999999999999999887765555566677776665555555422234567789999999999
Q ss_pred CCCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCC-CccccccccccceEeccCcccccccc
Q 008100 382 SGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDES-SSQSEKAYTGEGLIVNSSNLISGLDI 460 (577)
Q Consensus 382 ~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~-~~~~~~~~~~~g~~v~~~~~~~~~~~ 460 (577)
+++.+||+.++||++++|||+||+|||||++||++|++||||++++|++++.. ..+....|.+.|.++++. .+
T Consensus 316 ~~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~ns~------~~ 389 (878)
T 2v0c_A 316 TGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSG------PF 389 (878)
T ss_dssp TCCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEECSSG------GG
T ss_pred CCCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHHHHHcCCCceeeeCCCCccccccccccccCCeeEecCC------CC
Confidence 99999999999999999999999999999999999999999999999875321 001134677788887654 58
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCceeeeeccCcccccCcCccccccceEEECCCCeeeecCCCCCCCCCCCCCCcC-CCCC
Q 008100 461 NGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFT-PTGT 539 (577)
Q Consensus 461 ~g~~~~~a~~~ii~~l~~~g~~~~~~~~~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~~l~~~l~~~~~~~-~~G~ 539 (577)
+||...+|+.+|+++|.+.|.++++++|++||||||||||||+|||||||++|| .+++++++||+.||+++++. .+|.
T Consensus 390 ~Gl~~~eA~~~Ii~~L~~~g~~~~~v~~rlrDW~ISRQR~WG~PIPi~~~~~~~-~v~v~~~~lpv~lp~~~~~~~~~~~ 468 (878)
T 2v0c_A 390 DGTESEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEACG-VVPVPEEELPVLLPDLKDVEDIRPK 468 (878)
T ss_dssp TTCBHHHHHHHHHHHHHHHTSEEEEEEESCCCEECEESCSSSEECCEEEETTTE-EEECCGGGCCCCCCCCCCHHHHSCS
T ss_pred CCcCHHHHHHHHHHHHHHCCCCCCceEEecccchhhcccccCCcccEEEECCCC-eEecCHHHccccccchhhhhccccC
Confidence 999999999999999999999999999999999999999999999999999986 56689999999999887753 3454
Q ss_pred CCCcCccCccccccccCCCCCCcccccCcccccccCCC
Q 008100 540 GEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW 577 (577)
Q Consensus 540 ~~~~l~~~~~~v~~~~~~~g~~~~R~tDtmD~WfdSsW 577 (577)
+.+|+..+.+|+.++||+||+.++|+||||||||||||
T Consensus 469 g~~pl~~~~~~~~~~cp~cg~~~~retDtmDtwfdSsw 506 (878)
T 2v0c_A 469 GKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSW 506 (878)
T ss_dssp SSCGGGGCHHHHEEECTTTCSEEEECCCEECHHHHHTS
T ss_pred CCChhhhhHhhcCCcCCCCCCcceeccccccccccccc
Confidence 45688889999999999999999999999999999999
No 3
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=3.9e-97 Score=861.99 Aligned_cols=461 Identities=24% Similarity=0.373 Sum_probs=341.2
Q ss_pred cccCCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcc
Q 008100 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (577)
Q Consensus 60 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~ 139 (577)
++.++++.++|++||++|+++++|++..+.++++++|+|++|||||||. ||||||+|++++|+++||+||+||+|+|++
T Consensus 14 fpm~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPY~nG~-lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~ 92 (917)
T 1ffy_A 14 FPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGN-LHMGHALNKILKDFIVRYKTMQGFYAPYVP 92 (917)
T ss_dssp CCSSCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSC-CCHHHHHHHHHHHHHHHHHHTTTCBCCCCC
T ss_pred CCCCCChHHHhHHHHHHHHHCCCcccchhhccCCCceeeCCCCCCCCCc-chHHHHHHHHHHHHHHHHHHhCCCCCCCcc
Confidence 3456899999999999999999999764345678999999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHHHhCCCc------------hhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHH
Q 008100 140 GWDAFGLPAEQYAIETGTHP------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLK 207 (577)
Q Consensus 140 G~D~~Glpie~~a~~~g~~~------------~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~ 207 (577)
||||||+|||.+|++.|+.+ ++++.++++.|++||++||+++||+++|+||||.|++.++++|.+|++
T Consensus 93 GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~ 172 (917)
T 1ffy_A 93 GWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMAD 172 (917)
T ss_dssp EEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHH
T ss_pred cCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999998875 457788999999999999999999999999999999999999999999
Q ss_pred CCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHHHHhhhc
Q 008100 208 RGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGR 287 (577)
Q Consensus 208 kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~ 287 (577)
+|+||++.++|+|||.|+|+||++||++.. . +
T Consensus 173 kGliYr~~~~v~wcp~~~T~Lae~eVey~d-~-----------------------------------------------~ 204 (917)
T 1ffy_A 173 KGLIYKGKKPVYWSPSSESSLAEAEIEYHD-K-----------------------------------------------R 204 (917)
T ss_dssp TTCEEEEEEEEEEETTTTEECCGGGEEEEE-E-----------------------------------------------E
T ss_pred cCCeEecccceeccCCCCcCcchhhhhccc-c-----------------------------------------------c
Confidence 999999999999999999999999998521 1 1
Q ss_pred cCCceEEEEeecCCCC-CccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchhhhh---
Q 008100 288 SEGAEMDFRVLDSDGQ-ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTE--- 363 (577)
Q Consensus 288 ~~~~~~~f~l~~~~~~-~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 363 (577)
+.+++++|++.+..+. ..+.+++||||||||||||+||||||+++|+.+.+..+.....+++.........++...
T Consensus 205 ~~~~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~ 284 (917)
T 1ffy_A 205 SASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKL 284 (917)
T ss_dssp EEEEECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCCC
T ss_pred CceEEEEEEecccccccCCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCCceeehHHHHHHHHHHhcCcccceeee
Confidence 2345667776542110 014689999999999999999999999999865544332223344443322222222211
Q ss_pred hhhcccccccceEEecCCCCCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCCCcccccccc
Q 008100 364 LQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYT 443 (577)
Q Consensus 364 ~~~~~~~~~~G~~~~~P~~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~~~~~~~~~~ 443 (577)
+...++..|.|+++.||++++.+||+.++||++++|||+||+|||||++||++|++||||++++|+++| .+++....|.
T Consensus 285 ~~~~~G~~l~g~~~~~P~~~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G-~~~~~~~~~~ 363 (917)
T 1ffy_A 285 EKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKG-VFTEEGGQFE 363 (917)
T ss_dssp CCCCCTTTCTTCCCBCCTTCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSS-CCCTTCSSCS
T ss_pred eeeeecccccCCEEECCCCCCeeeEEeccccccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCCc-eeCCcccccC
Confidence 222334479999999999999999999999999999999999999999999999999999999998754 3433322333
Q ss_pred cc----------------ceEecc--------CccccccccCC-------CCHHHHHHHHHHHHHh------cCCCce-e
Q 008100 444 GE----------------GLIVNS--------SNLISGLDING-------LSCQEATSKVIEWAEK------TGNGKK-K 485 (577)
Q Consensus 444 ~~----------------g~~v~~--------~~~~~~~~~~g-------~~~~~a~~~ii~~l~~------~g~~~~-~ 485 (577)
|. |.++.. .|++++..+.- +...+.+.++++++.+ .+..+. .
T Consensus 364 G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~~~~~~P~~~~~r~~~ 443 (917)
T 1ffy_A 364 GMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYN 443 (917)
T ss_dssp SSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTSEESSHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHHHHHHHHHhcCcccCHHHHHHHHH
Confidence 31 111110 01111111100 0011122233333321 110000 0
Q ss_pred eeeccCcccccCcCccccccceEEECCCCeeeecCCCCCCCCCCCCCCcCCCCCCCCcCccCccccc--cccCCCCC-Cc
Q 008100 486 VNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQ--TTEHSSGK-PA 562 (577)
Q Consensus 486 ~~~~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~~l~~~l~~~~~~~~~G~~~~~l~~~~~~v~--~~~~~~g~-~~ 562 (577)
+..+++|||||||||||+|||+|||++ |+++ ++++ ++..++++ +..+|.+.|+-....+|++ .+||+||+ .+
T Consensus 444 ~l~~~~DW~ISRqr~WG~PIP~~~~~~-g~~~-~~~~-~~~~i~~~--~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~ 518 (917)
T 1ffy_A 444 MVRDRGEWVISRQRVWGVPLPVFYAEN-GEII-MTKE-TVNHVADL--FAEHGSNIWFEREAKDLLPEGFTHPGSPNGTF 518 (917)
T ss_dssp HHHHCCCEECEESCSSSCBCCCEECTT-SCEE-CCHH-HHHHHHHH--HHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCC
T ss_pred HHhcCccceeeccCCcCcccceeeCCC-CCEe-cCHH-HHHHHHHH--hhhcCCcccccCCHHHhcccccccccCCcccc
Confidence 011468999999999999999999987 6654 5543 22222221 2223544333234456664 57999995 79
Q ss_pred ccccCcccccccC
Q 008100 563 RRETSTMPQWAGS 575 (577)
Q Consensus 563 ~R~tDtmD~WfdS 575 (577)
+|++|||||||||
T Consensus 519 ~~~~D~lD~WfdS 531 (917)
T 1ffy_A 519 TKETDIMDVWFDS 531 (917)
T ss_dssp EECCCEECHHHHH
T ss_pred cccCCCcCeecCC
Confidence 9999999999988
No 4
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=6.1e-94 Score=831.51 Aligned_cols=435 Identities=23% Similarity=0.371 Sum_probs=341.6
Q ss_pred cCCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccc
Q 008100 62 RAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGW 141 (577)
Q Consensus 62 ~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~ 141 (577)
.+|+|.++|++||++|+++++|++..+.++++++|++++|||||||. |||||+++++++|+++||+||+||+|++++||
T Consensus 6 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~-lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~ 84 (821)
T 1ile_A 6 GEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGL-PHVGHAQARSYKDLFPRYKTMRGYYAPRRAGW 84 (821)
T ss_dssp CCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSC-CCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEE
T ss_pred cCCCHHHHHHHHHHHHHHCCCcccChhhcCCCCcEEEecCCCCCCCC-CchhhhHhHHHHHHHHHHHHhcCCcccccccc
Confidence 67999999999999999999998764334578999999999999998 99999999999999999999999999999999
Q ss_pred cccChHHHHHHHHh-CCCch----------------hhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHH
Q 008100 142 DAFGLPAEQYAIET-GTHPK----------------ITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQ 204 (577)
Q Consensus 142 D~~Glpie~~a~~~-g~~~~----------------~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~ 204 (577)
||||+|||.+|++. |..++ +++.++++.|+++|++||+++||+++|+|+|+.|+++++++|.+
T Consensus 85 D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~ 164 (821)
T 1ile_A 85 DTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKN 164 (821)
T ss_dssp CCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHH
Confidence 99999999999985 87643 45667888999999999999999999999999999999999999
Q ss_pred HHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHHHHh
Q 008100 205 LLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNW 284 (577)
Q Consensus 205 L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~~~~ 284 (577)
|+++|+||++.++|+|||.|+|+||++||++|++++++
T Consensus 165 L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~~~~------------------------------------------ 202 (821)
T 1ile_A 165 LFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQD------------------------------------------ 202 (821)
T ss_dssp HHHTTCEEEECCEEEEETTTTEECCHHHHHHTEEEEEE------------------------------------------
T ss_pred HHHcCCeeecCcceEecCCCCCcccHhHhhcCcccccC------------------------------------------
Confidence 99999999999999999999999999999766554332
Q ss_pred hhccCCceEEEEeecCCC-CCccceEEEecCCCCccccCcEEEEcCCCccchhhccccc----hhhHHHHHHHHhcccch
Q 008100 285 IGRSEGAEMDFRVLDSDG-QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQ----SQNIEEYKNLASRKSDL 359 (577)
Q Consensus 285 i~~~~~~~~~f~l~~~~~-~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~----~~~~~~~~~~~~~~~~~ 359 (577)
..++|+|++.+... ...+.+|+||||||||||||+||||||+++|+......+. ...++.+.. ...
T Consensus 203 ----~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~-----~~~ 273 (821)
T 1ile_A 203 ----PSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLG-----EGT 273 (821)
T ss_dssp ----EEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHHTC-----TTS
T ss_pred ----ceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcCCcEEEehHHHHHHHHh-----hCc
Confidence 23578888864200 0014799999999999999999999999999866542221 122232211 111
Q ss_pred hhhhhhhcccccccceEEecCCC---CCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCCCc
Q 008100 360 ERTELQKEKTGVFSGCYARNPAS---GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSS 436 (577)
Q Consensus 360 ~~~~~~~~~~~~~~G~~~~~P~~---~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~~~ 436 (577)
..+...++..|.|+.+.||+. ++.+||+.++||++++|||+||+|||||++||++|++||||++++|+++| .+
T Consensus 274 --~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G-~~- 349 (821)
T 1ile_A 274 --QVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEG-KL- 349 (821)
T ss_dssp --CEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTTS-BB-
T ss_pred --EEEEEechHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecCCCCHHHHHHHHHcCCCcceeECCCC-cC-
Confidence 112223344788999999985 78999999999999999999999999999999999999999999997653 22
Q ss_pred cccccccccceEeccCccccccccCCCCHHHHHHHHHHHHHhcCCCcee-------------------------------
Q 008100 437 QSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK------------------------------- 485 (577)
Q Consensus 437 ~~~~~~~~~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~~~~------------------------------- 485 (577)
.++ + +.|+.+.+|+.+|++.|.+.|.+...
T Consensus 350 ------------~~~-----~--~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~~ 410 (821)
T 1ile_A 350 ------------LVE-----P--FKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTL 410 (821)
T ss_dssp ------------CSG-----G--GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGGG
T ss_pred ------------ccc-----C--cCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhhchHH
Confidence 111 1 56667777777777777765542211
Q ss_pred -----------eee---------------ccCcccccCcCccccccceEEECCCCeeeecC-CCCCCCCCCCCCCcCCCC
Q 008100 486 -----------VNY---------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLH-EAELPLTLPELDDFTPTG 538 (577)
Q Consensus 486 -----------~~~---------------~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~-~~~l~~~l~~~~~~~~~G 538 (577)
++| +++|||||||||||+|||+|+|++||+..++. .+++. ..+. +.. .|
T Consensus 411 ~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l~-~~~~--~~~-~~ 486 (821)
T 1ile_A 411 FKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELK-ARAT--KPL-PE 486 (821)
T ss_dssp GHHHHHHHHHHSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHH-HHBS--SCC-CS
T ss_pred HHHHHHHHhcCeEEECchhhHhHHHHHHhCCchheecccCCCCCeeeEEEecCCCcEEeeCcHHHHH-hhcc--ccc-cc
Confidence 111 57999999999999999999999998765543 22220 0000 000 00
Q ss_pred CCCCcCccCccccccccCCCCCCcccccCcccccccCCC
Q 008100 539 TGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW 577 (577)
Q Consensus 539 ~~~~~l~~~~~~v~~~~~~~g~~~~R~tDtmD~WfdSsW 577 (577)
- ...+.+..+++...|| ||+.++|++|||||||||||
T Consensus 487 ~-~~l~~~~~d~~~~~~~-~g~~~~r~~dvld~WfdS~~ 523 (821)
T 1ile_A 487 P-FDPHRPYVDQVELACA-CGGTMRRVPYVIDVWYDSGA 523 (821)
T ss_dssp S-CCCSHHHHTTCEEECT-TSSEEEECSCBCCHHHHHHH
T ss_pred h-hhhccccccccccCCC-CCCchhhcccccceeccccc
Confidence 0 0111224466777899 99999999999999999975
No 5
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=1.3e-91 Score=809.30 Aligned_cols=383 Identities=28% Similarity=0.459 Sum_probs=321.8
Q ss_pred cccCCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcc
Q 008100 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (577)
Q Consensus 60 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~ 139 (577)
+++.|+|.++|++||++|++ ++|++. .+.++++|+|++||||+||. |||||++|++++|+++||+||+||+|++++
T Consensus 3 ~~~~y~~~~~E~~~~~~W~~-~~f~~~--~~~~~~~f~i~~ppPy~nG~-lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~ 78 (862)
T 1gax_A 3 LPKAYDPKSVEPKWAEKWAK-NPFVAN--PKSGKPPFVIFMPPPNVTGS-LHMGHALDNSLQDALIRYKRMRGFEAVWLP 78 (862)
T ss_dssp CCSSCCGGGTHHHHHHHHHH-SCCCCC--TTCCSCEEEEECCCCBSSSC-CCHHHHHHHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CccCCChHHHHHHHHHHHHh-CCCccC--cCCCCCcEEEEcCCCCCCCC-cchhhhHHHHHHHHHHHHHHhCCCcccccc
Confidence 67889999999999999999 999976 34578899999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHHH----hCCCch------------hhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHH
Q 008100 140 GWDAFGLPAEQYAIE----TGTHPK------------ITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFL 203 (577)
Q Consensus 140 G~D~~Glpie~~a~~----~g~~~~------------~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~ 203 (577)
||||||+|+|.++++ .|+.++ +++.++++.|++||++||+++||++.|+|+|+.|+++++++|.
T Consensus 79 G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~ 158 (862)
T 1gax_A 79 GTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFS 158 (862)
T ss_dssp EEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHH
Confidence 999999999988874 355543 4578899999999999999999999999999999999999999
Q ss_pred HHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHHHH
Q 008100 204 QLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRN 283 (577)
Q Consensus 204 ~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~~~ 283 (577)
+|+++|+||++.++|+|||.|+|+||++||++.. ..
T Consensus 159 ~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e--~~------------------------------------------ 194 (862)
T 1gax_A 159 RYYHEGLAYRAPRLVNWCPRCETTLSDLEVETEP--TP------------------------------------------ 194 (862)
T ss_dssp HHHTTSSEEEECCEEEEETTTTEEECGGGEEECC--EE------------------------------------------
T ss_pred HHHHCCCEEecccccccCCCcCcccccccccccc--cc------------------------------------------
Confidence 9999999999999999999999999999997531 11
Q ss_pred hhhccCCceEEEEeecCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchhhhh
Q 008100 284 WIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTE 363 (577)
Q Consensus 284 ~i~~~~~~~~~f~l~~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (577)
+..++|+|++.+. .+|+|||||||||+||+||||||+++..
T Consensus 195 ----g~~~~v~f~~~~~------~~l~v~TTrPeTl~g~~avav~P~~~ry----------------------------- 235 (862)
T 1gax_A 195 ----GKLYTLRYEVEGG------GFIEIATVRPETVFADQAIAVHPEDERY----------------------------- 235 (862)
T ss_dssp ----EEEEEEECCCSSS------CCCEEEESCSGGGTTCCCEEECSSCCTT-----------------------------
T ss_pred ----ceEEEEEEEecCC------CEEEEEeCCccccccceEEEECCCccHH-----------------------------
Confidence 1335788888642 4899999999999999999999998631
Q ss_pred hhhcccccccceEEecCCCCCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCCCcccccccc
Q 008100 364 LQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYT 443 (577)
Q Consensus 364 ~~~~~~~~~~G~~~~~P~~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~~~~~~~~~~ 443 (577)
..|.|+++.||++++.+||+.++||++++|||+||+|||||++||++|++||||++++|+++|. +++...
T Consensus 236 ------~~l~G~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~-~~~~~~--- 305 (862)
T 1gax_A 236 ------RHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGR-MEGERV--- 305 (862)
T ss_dssp ------CSCTTCCCBCTTCCCBCCEEECTTCCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSB-BCSSSS---
T ss_pred ------HHHcCCEEECCCCCCeeeEEeccccccCCCCcceEecCCCCchHHHHHHHcCCCccceeCCCCc-cccccC---
Confidence 1367899999999999999999999999999999999999999999999999999999987542 221110
Q ss_pred ccceEeccCccccccccCCCCHHHHHHHHHHHHHhcCCCce---------------------------------------
Q 008100 444 GEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKK--------------------------------------- 484 (577)
Q Consensus 444 ~~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~~~--------------------------------------- 484 (577)
...+.||.+.+|+.+|+++|.+.|....
T Consensus 306 -------------~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~ 372 (862)
T 1gax_A 306 -------------PEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLK 372 (862)
T ss_dssp -------------CTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHHHHHHHHHH
T ss_pred -------------CcccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecCCCCeEEEEecceEEEEhHHHHHHHHH
Confidence 0136677777777777777776654211
Q ss_pred -----eeee--------------ccCcccccCcCccccccceEEECCCCeeeecCCCCCCCCCCCCCCcCCCCCCCCcCc
Q 008100 485 -----KVNY--------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLS 545 (577)
Q Consensus 485 -----~~~~--------------~~~DWcISRQR~WG~PIPv~~~~~~g~~~~~~~~~l~~~l~~~~~~~~~G~~~~~l~ 545 (577)
++++ +++|||||||||||+|||+|+|++||+++ +...++ +. . +
T Consensus 373 ~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~~~~~~i~-v~~~~~---------l~--~-~----- 434 (862)
T 1gax_A 373 GLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVN-VPRPER---------YL--E-D----- 434 (862)
T ss_dssp HHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEETTTCCEE-CCCGGG---------TT--C-C-----
T ss_pred HHHcCCceEcCHHHHHHHHHHHhcccceeEecccCCCcccCceecCCCCEEE-Eecccc---------cc--c-c-----
Confidence 1111 67999999999999999999999988754 443221 10 0 0
Q ss_pred cCccccccccCCCCC-CcccccCcccccccCC
Q 008100 546 KAVSWVQTTEHSSGK-PARRETSTMPQWAGSC 576 (577)
Q Consensus 546 ~~~~~v~~~~~~~g~-~~~R~tDtmD~WfdSs 576 (577)
...|++||+ .++|++||||||||||
T Consensus 435 ------~~~~~~~g~~~~~r~~DvlDtWfdS~ 460 (862)
T 1gax_A 435 ------PTSCEACGSPRLKRDEDVFDTWFSSA 460 (862)
T ss_dssp ------CCSCTTTCCSCEEECCCCBCHHHHHT
T ss_pred ------chhhhhcCchheecCCcccceeeccC
Confidence 016788986 7999999999999997
No 6
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.6e-79 Score=718.31 Aligned_cols=360 Identities=30% Similarity=0.505 Sum_probs=275.7
Q ss_pred cCCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccc
Q 008100 62 RAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGW 141 (577)
Q Consensus 62 ~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~ 141 (577)
+.|||.++|++||++|+++++|++..+..+++++|++++|||||||. |||||++|++++|+++||+||+||+|+|++||
T Consensus 2 ~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~kf~i~~~pPy~nG~-lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~Gw 80 (967)
T 1wz2_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGH-LHVGHARTYTIPDVIARFKRMQGYNVLFPMAW 80 (967)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSCCGGGSCGGGCCBEEECCCBCSSC-CBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEEeCCCCCCCC-cchhhhHHHHHHHHHHHHHHcCCCccCCCCcC
Confidence 57999999999999999999999874322234889999999999998 99999999999999999999999999999999
Q ss_pred cccChHHHHHHHHh---------------C---------CCchhhHHHHHHHHHHHHHHhCCCCCCCCceeCCC--hhhH
Q 008100 142 DAFGLPAEQYAIET---------------G---------THPKITTLRNINRFRTQLKSLGFSYDWNREISTIE--PAYY 195 (577)
Q Consensus 142 D~~Glpie~~a~~~---------------g---------~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d--~~~~ 195 (577)
||||+|||..|.+. | ..+++++.++.+.|++||++||+++||+++|.|+| |.|+
T Consensus 81 D~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~ 160 (967)
T 1wz2_A 81 HITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFS 160 (967)
T ss_dssp BCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHH
T ss_pred CCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHH
Confidence 99999999887642 2 23566788899999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCH
Q 008100 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPE 275 (577)
Q Consensus 196 ~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~ 275 (577)
++++|+|.+|+++|+||++.++|+|||.|+|+||++||+++.+..
T Consensus 161 ~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~~~~~~~----------------------------------- 205 (967)
T 1wz2_A 161 KFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVP----------------------------------- 205 (967)
T ss_dssp HHHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCSSCCCCC-----------------------------------
T ss_pred HHHHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhccCCCce-----------------------------------
Confidence 999999999999999999999999999999999999998764210
Q ss_pred HHHHHHHHhhhccCCceEEEEeecCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccc----cchhhHHHH-H
Q 008100 276 SVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVST----TQSQNIEEY-K 350 (577)
Q Consensus 276 ~~~~~~~~~i~~~~~~~~~f~l~~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~----~~~~~~~~~-~ 350 (577)
.+..++|+|++.+.. .+.+++||||||||||||+||||||+++|+.+.+.. +.....++. .
T Consensus 206 -----------~~~~~~v~f~~~~~~---~~~~l~i~TTrPeTl~g~~avav~P~~~Y~~~~~~~~~~~~~~i~a~~~~~ 271 (967)
T 1wz2_A 206 -----------ILDYIIIKFELRENG---EVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAY 271 (967)
T ss_dssp -----------EECCEEEEEECCCSS---SCCEEEEEESCGGGGGGCCEEEECSSSCEEEEEEECSSCEEEEEEEHHHHH
T ss_pred -----------eceeEEEEEEecCCC---CceEEEEEcCCchHhhhheEEEECCCCcEEEEEecCCCcceeeehHHHHHH
Confidence 012247899886421 236899999999999999999999999998654432 111111111 1
Q ss_pred HHHhcccchhhhhhhhcccccccceEEecCCCCCeeeEEeecccccCCCCCceeccCCCChhhHHH----------HHHc
Q 008100 351 NLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEF----------ALKF 420 (577)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~----------~~k~ 420 (577)
.+.......+ .+...++..|.|+++.||++++.+||++++||++++|||+||+|||||++||++ |++|
T Consensus 272 ~~~~~~~~~~--~~~~~~G~~l~G~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~~k~ 349 (967)
T 1wz2_A 272 KLSFQDREIE--VIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKY 349 (967)
T ss_dssp HHHHSSCEEE--EEEECCSSTTSSCEEECSSSSCEEEEEECSSCCSSSTTSCEEECTTSCTTTTTTTSCCSCCSCCCCTT
T ss_pred HHHhhccCcE--EEEEEEchhhcCCEEECCCCCCceEEEecccccCCCCcccEEeecCCCHHHHHHHHhhccchhHHHHc
Confidence 1111111110 112233447999999999999999999999999999999999999999999985 5788
Q ss_pred CCe--------eEEeecCCCC-CCc--------------cc-------cccccc---cceEeccCccccccccCCCCHHH
Q 008100 421 DIS--------IHSVVMPDDE-SSS--------------QS-------EKAYTG---EGLIVNSSNLISGLDINGLSCQE 467 (577)
Q Consensus 421 ~L~--------i~~~v~~~~~-~~~--------------~~-------~~~~~~---~g~~v~~~~~~~~~~~~g~~~~~ 467 (577)
||+ ++++|+.++. .+. +. ...|.. .|.+. . -.+.|+.+.+
T Consensus 350 ~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~-~------g~~~G~~v~e 422 (967)
T 1wz2_A 350 DIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK-V------PPYEGKPVQE 422 (967)
T ss_dssp CCCCCCC----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCC-S------SSSCSSBHHH
T ss_pred CCchhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCceEe-c------cCcCCcCHHH
Confidence 977 7788754321 000 00 011221 45554 2 1588888888
Q ss_pred HHHHHHHHHHhcC
Q 008100 468 ATSKVIEWAEKTG 480 (577)
Q Consensus 468 a~~~ii~~l~~~g 480 (577)
|+.+|+++|.+.|
T Consensus 423 a~~~i~~~L~~~g 435 (967)
T 1wz2_A 423 VKEAIAKEMLEKG 435 (967)
T ss_dssp HTTTTHHHHHHHT
T ss_pred HHHHHHHHHHhCC
Confidence 8888888888765
No 7
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.4e-76 Score=683.36 Aligned_cols=361 Identities=30% Similarity=0.499 Sum_probs=278.6
Q ss_pred cCCCchhhhHHHHHHHHHCCCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccc
Q 008100 62 RAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGW 141 (577)
Q Consensus 62 ~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~ 141 (577)
..|||.++|++||++|+++++|++..+.++++++|+|+++||||||. |||||++|++++|+++||+||+||+|++++||
T Consensus 2 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~i~~~~Py~nG~-lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~ 80 (810)
T 1wkb_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGH-LHVGHARTYTIPDVIARFKRMQGYNVLFPMAW 80 (810)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTCCCGGGSCGGGEEEEEECCCBTTSC-CBHHHHHHHHHHHHHHHHHHHHTCEEECCCCB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCchhcCCCCcEEEEeCCCCCCCC-CccccchhHHHHHHHHHHHHcCCCccCcCCcc
Confidence 57999999999999999999999875434457899999999999998 99999999999999999999999999999999
Q ss_pred cccChHHHHHHHHh------------------------CCCchhhHHHHHHHHHHHHHHhCCCCCCCCceeCCC--hhhH
Q 008100 142 DAFGLPAEQYAIET------------------------GTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIE--PAYY 195 (577)
Q Consensus 142 D~~Glpie~~a~~~------------------------g~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d--~~~~ 195 (577)
||||+|||..|.+. +..+++++.++.+.|+++|++||+++||+++|+|+| +.|+
T Consensus 81 D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~ 160 (810)
T 1wkb_A 81 HITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFS 160 (810)
T ss_dssp BCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHH
T ss_pred CCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHH
Confidence 99999999876532 124566788889999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCH
Q 008100 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPE 275 (577)
Q Consensus 196 ~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~ 275 (577)
+.++++|.+|+++|+||++.++|+|||.|+|+||++||+++.+...
T Consensus 161 ~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~~~~~~~~---------------------------------- 206 (810)
T 1wkb_A 161 KFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPI---------------------------------- 206 (810)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCSBCSSCCE----------------------------------
T ss_pred HHHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHHhcCCCCcc----------------------------------
Confidence 9999999999999999999999999999999999999987643210
Q ss_pred HHHHHHHHhhhccCCceEEEEeecCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccc----cchhhHHHHH-
Q 008100 276 SVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVST----TQSQNIEEYK- 350 (577)
Q Consensus 276 ~~~~~~~~~i~~~~~~~~~f~l~~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~----~~~~~~~~~~- 350 (577)
+..++|+|++.+.+ .+.+++||||||||||||+||||||+++|+.+.+.. +.....++..
T Consensus 207 ------------~~~~~v~f~~~~~~---~~~~l~v~TTrP~Tl~g~~av~v~P~~~y~~~~~~~~~~~~~~i~~~~~~~ 271 (810)
T 1wkb_A 207 ------------LDYIIIKFELRENG---EVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAY 271 (810)
T ss_dssp ------------EEEEEEEEECCSSC---SCCEEEEEESCGGGGGGCCEEEECTTSCEEEEEEEETTEEEEEEEEHHHHH
T ss_pred ------------ceeEEEEEEccCCC---CceEEEEEcCCchHhhhhhEEEECCCCcEEEEEecCCCcceeeeeHHHHHH
Confidence 01146889886431 136899999999999999999999999998654422 1111112211
Q ss_pred HHHhcccchhhhhhhhcccccccceEEecCCCCCeeeEEeecccccCCCCCceeccCCCChhhHHH----------HHHc
Q 008100 351 NLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEF----------ALKF 420 (577)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~----------~~k~ 420 (577)
.+.......+ .+...++..|.|+++.||++++.+||+.++||++++|||+||+|||||++||++ |++|
T Consensus 272 ~~~~~~~~~~--~~~~~~G~~l~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~~~~~~~~k~ 349 (810)
T 1wkb_A 272 KLSFQDREIE--VIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKY 349 (810)
T ss_dssp HHTTSSCEEE--EEEECTTTTTTTCEEECSSSCCEEEEEECTTSCTTSTTSCEEECTTTCHHHHHHHCCCSCCSCCCTTC
T ss_pred HHHhhhcceE--EEEEEEchhhcCCEEECCCCCCeeEEEecCcccCCCCceeEEeCCCCCHHHHHHHHhhccchhHHHHc
Confidence 1111110110 112223446999999999999999999999999999999999999999999986 5788
Q ss_pred CCe--------eEEeecCCCC-CCc--------------cc-------cccccc---cceEeccCccccccccCCCCHHH
Q 008100 421 DIS--------IHSVVMPDDE-SSS--------------QS-------EKAYTG---EGLIVNSSNLISGLDINGLSCQE 467 (577)
Q Consensus 421 ~L~--------i~~~v~~~~~-~~~--------------~~-------~~~~~~---~g~~v~~~~~~~~~~~~g~~~~~ 467 (577)
||| ++++|+.++. .+. +. ...|.. .|.+. .. .++|+.+.+
T Consensus 350 ~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~-~g------~~~G~~v~~ 422 (810)
T 1wkb_A 350 DIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK-VP------PYEGKPVQE 422 (810)
T ss_dssp SCCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHHHHHHHHSCEEC-SG------GGTTEEHHH
T ss_pred CCChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhhhhhhccccCceEe-cc------CcCCeEHHH
Confidence 977 7888765331 000 00 011221 46665 21 589999999
Q ss_pred HHHHHHHHHHhcCC
Q 008100 468 ATSKVIEWAEKTGN 481 (577)
Q Consensus 468 a~~~ii~~l~~~g~ 481 (577)
|+.+++++|.+.|.
T Consensus 423 a~~~i~~~L~~~g~ 436 (810)
T 1wkb_A 423 VKEAIAKEMLEKGI 436 (810)
T ss_dssp HHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHhCCC
Confidence 99999999998763
No 8
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=6.3e-40 Score=364.36 Aligned_cols=194 Identities=21% Similarity=0.301 Sum_probs=181.2
Q ss_pred CCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHH
Q 008100 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRF 170 (577)
Q Consensus 91 ~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~ 170 (577)
+..++|||+.++||+||. ||||||++++++|+++||+||+||+|+|++||||||+|||.+|+++|++++++++++++.|
T Consensus 6 ~~~k~f~Ittp~pY~nG~-lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~ 84 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAA-PHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEF 84 (542)
T ss_dssp -CCCCEEEEEEEEECSSC-CCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCCCCc-hhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 345779999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccC---------ccccC
Q 008100 171 RTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG---------VSERG 241 (577)
Q Consensus 171 ~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~---------~~~~~ 241 (577)
+++|++|||++|| ++.|+|+.|.+.++++|.+|+++|+||++.++|+|||+|+|+|++.||+++ .|.+|
T Consensus 85 ~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~~~~~s 162 (542)
T 3u1f_A 85 KKCFEQMDYSIDY--FIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLES 162 (542)
T ss_dssp HHHHHHHTCCCSE--EEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTT
T ss_pred HHHHHHhCCccCc--CccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCccccccCCC
Confidence 9999999999996 788999999999999999999999999999999999999999999999753 46778
Q ss_pred CcCeEEEecccchhhHhhhhHHHhhccCC---CCCCHHHHHHHHHhhhc
Q 008100 242 GHPVIRKPMRQWMLKITEYADRLLDDLDD---LDWPESVKEMQRNWIGR 287 (577)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~y~~~l~~~l~~---~~~p~~~~~~~~~~i~~ 287 (577)
|.+++.+.++||||++++|+++|.+++.. ..+|+..++...+|+..
T Consensus 163 g~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~~~~ 211 (542)
T 3u1f_A 163 GHVVTWVSEENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEK 211 (542)
T ss_dssp CCBEEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHH
T ss_pred CCcceeeccccceecchhHHHHHHHHHhhcccccCCchhhHhHhhhhhc
Confidence 99999999999999999999999998764 34899999998888854
No 9
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=2.5e-39 Score=369.05 Aligned_cols=191 Identities=24% Similarity=0.439 Sum_probs=181.1
Q ss_pred CcEEEEcCCCCCCCCCCCcchhhH-hHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHH
Q 008100 94 PKFYVLDMFPYPSGAGLHVGHPLG-YTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (577)
Q Consensus 94 ~~f~i~~~pPypng~~LHiGHa~~-~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (577)
++|||+.+|||+||. |||||+++ ++++|+++||+||+||+|+|++|||+||+||+.+|++.|++++++++++++.|++
T Consensus 2 ~~~~itt~~Py~nG~-lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~ 80 (722)
T 1rqg_A 2 VRYMVTSALPYANGP-IHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKI 80 (722)
T ss_dssp CEEEEEECCCBTTSC-CBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCc-hhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 479999999999998 99999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCch---------------------
Q 008100 173 QLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANE--------------------- 231 (577)
Q Consensus 173 ~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~--------------------- 231 (577)
+|++|||++| .+++|+++.|.+.++++|.+|+++|+||++.++|+|||.|+|+|++.
T Consensus 81 ~~~~lgis~D--~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~ 158 (722)
T 1rqg_A 81 TFQRAKISFD--FFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEV 158 (722)
T ss_dssp HHHHHTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSS
T ss_pred HHHHhCCCCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhh
Confidence 9999999877 58999999999999999999999999999999999999999988765
Q ss_pred --------hhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHHHHhhhc
Q 008100 232 --------EVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGR 287 (577)
Q Consensus 232 --------Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~ 287 (577)
|+.+++|++||.+++.+.++||||++++|+++|++++++..||+++++++.+||+.
T Consensus 159 ~G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~wp~~~~~~~~~wl~~ 222 (722)
T 1rqg_A 159 CGRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEE 222 (722)
T ss_dssp SCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTT
T ss_pred cccccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHC
Confidence 44567889999999999999999999999999999998777999999999999953
No 10
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=100.00 E-value=3.2e-38 Score=309.14 Aligned_cols=197 Identities=49% Similarity=0.838 Sum_probs=149.8
Q ss_pred hccCCceEEEEeecCCCC----------------CccceEEEecCCCCccccCcEEEEcCCCccchhhccccch------
Q 008100 286 GRSEGAEMDFRVLDSDGQ----------------ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQS------ 343 (577)
Q Consensus 286 ~~~~~~~~~f~l~~~~~~----------------~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~------ 343 (577)
|||.|+.|+|++.+.+.. +...+++||||||||||||+||||||+++|+..+...+..
T Consensus 1 gkS~G~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~~~~~~~~~~~~~ 80 (219)
T 3o0a_A 1 GRSEGALIRFYVEIEEPEKFLNCVPEELKETLLKEKRIYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACY 80 (219)
T ss_dssp ---CCEEEEEEEECSCGGGTGGGSCHHHHHHHHHHSEEEEEEEESCGGGGGGCCEEEECTTCTHHHHHHHHHHHTTCCCH
T ss_pred CceeEEEEEEEecCCccccccccccchhhhhcccCCCCEEEEEECCcchhhcccEEEECCCCcEEEEEecCCccccchhH
Confidence 689999999999753200 0126899999999999999999999999998776543222
Q ss_pred hhHHHHHHHHhcccchhhhhhhhcccccccceEEecCCCCCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCe
Q 008100 344 QNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDIS 423 (577)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~ 423 (577)
..+++|+.........+.... ..+.|.|.|.++.||++++.+||+.++||++++|||+||+|||||++||++|++||||
T Consensus 81 ~~~~~~i~~~~~~~~~~~~~~-~~~~G~l~G~~~~~Pl~~~~iPI~~adyV~~~~GTGaV~~aPaHd~~D~~~~~k~~Lp 159 (219)
T 3o0a_A 81 SDVENFVEKMKKMSTRERTME-EDKEGVFLGVYATNPANGEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLP 159 (219)
T ss_dssp HHHHHHHHHHHTCCHHHHHSC-SSCCEEEEEEEEECTTTCCEEEEEEETTSCTTSTTSEEEECTTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhccccceeE-EEeeeEEcCCEEECCCCCCeeeEEEecccccCCCCCeEEECCCCCHHHHHHHHHcCCC
Confidence 334555554444433333333 4556679999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCCCCCccccccccccceEeccCccccccccCCCCHHHHHHHHHHHHHhcCCCceeeeecc
Q 008100 424 IHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKL 490 (577)
Q Consensus 424 i~~~v~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~~~~~~~~~ 490 (577)
++++|++++. .......|.+.|.++++. .++||.+++|+.+|+++|.+.|.+.+..+|++
T Consensus 160 i~~vi~~~~~-~~~~~g~ft~~g~~~~~~------~~~Gl~~~eA~~~Ii~~L~~~g~l~~~~~yrL 219 (219)
T 3o0a_A 160 IKVVVKPEGA-WDFEKGAYEGKGTLVNSD------GFDGLDSETAKRKITEWLQDRGLGEKKVSYRL 219 (219)
T ss_dssp CCCCEECSSC-CCTTTCCCCSCCEECSCG------GGTTCBHHHHHHHHHHHHHHTTSEEEC-----
T ss_pred ceeeeCCccc-cccccccccccceEecCC------CCCCCCHHHHHHHHHHHHHHCCCeeeeeeecC
Confidence 9999987531 112234677788887543 58999999999999999999998887777653
No 11
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=100.00 E-value=1.7e-36 Score=292.92 Aligned_cols=185 Identities=41% Similarity=0.673 Sum_probs=147.2
Q ss_pred cCCceEEEEeecCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchhhhhhhhc
Q 008100 288 SEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKE 367 (577)
Q Consensus 288 ~~~~~~~f~l~~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (577)
..|++|+|++.+. +.+|+||||||||||||+||||||+++|+..... +...+++|+......+..+...+...
T Consensus 10 ~~g~~v~F~~~~~-----~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (196)
T 2ajg_A 10 GEGVEITFNVNDY-----DNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAE--NNPELAAFIDECRNTKVAEAEMATME 82 (196)
T ss_dssp -CEEEEEEEBTTC-----SSEEEEEESCGGGGGGCCEEEECTTSHHHHHHHT--TCHHHHHHHHHHHHCCCCGGGGGGSC
T ss_pred CceEEEEEEeCCC-----CcEEEEEECChhhhcCccEEEECCCCcEEEEEcC--CHHHHHHHHHHhhcccccceEEEeee
Confidence 5789999999542 4689999999999999999999999999876432 23445666655444433444344456
Q ss_pred ccccccceEEecCCCCCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCCCcc-ccccccccc
Q 008100 368 KTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQ-SEKAYTGEG 446 (577)
Q Consensus 368 ~~~~~~G~~~~~P~~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~~~~-~~~~~~~~g 446 (577)
++|.|.|+++.||++++.+||+.++||++++|||+||+|||||++||++|++||||++++|++.++...+ ....|.+.|
T Consensus 83 k~g~l~G~~~~~P~~~~~ipV~~ad~V~~~~GTG~V~~aPah~~~D~~~~~k~~L~i~~vI~~~~g~~~d~~~g~y~~~g 162 (196)
T 2ajg_A 83 KKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKG 162 (196)
T ss_dssp CCEEEEEEEEECTTTCCEEEEEEETTCCSSSSCSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSSCCCCSSSCCCSCC
T ss_pred eCCEEcCCEEECCCCCCeeEEEEeCCCccCCCCceEEECCCCCHHHHHHHHHcCCCceeEEeCCcCcccccccccccCCc
Confidence 7789999999999999999999999999999999999999999999999999999999999743221111 234566777
Q ss_pred eEeccCccccccccCCCCHHHHHHHHHHHHHhcCCCcee
Q 008100 447 LIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK 485 (577)
Q Consensus 447 ~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~~~~ 485 (577)
.++++. .++||.+++|+.+|+++|.+.|.+.++
T Consensus 163 ~~~ns~------~~~Gl~v~eA~~~Ii~~L~~~g~~~~~ 195 (196)
T 2ajg_A 163 VLFNSG------EFNGLDHEAAFNAIADKLTAMGVGERK 195 (196)
T ss_dssp CBCSSG------GGTTCCHHHHHHHHHHHHHHTTSEEEE
T ss_pred eEecCc------ccCCeEHHHHHHHHHHHHHHCCCceee
Confidence 776543 589999999999999999999877654
No 12
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=7.4e-36 Score=328.24 Aligned_cols=191 Identities=25% Similarity=0.369 Sum_probs=150.0
Q ss_pred CCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHH
Q 008100 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (577)
Q Consensus 93 ~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (577)
+++|||+.++|||||. |||||+++++++|+++||+||+||+|++++|||+||+|||.+|++.|.+++++++++++.|++
T Consensus 4 ~~~~~i~~p~py~ng~-lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 82 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDV-PHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKK 82 (497)
T ss_dssp SCEEEEEEEEEETTSC-CCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCc-cchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4789999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhcc-CccccCCcCeEEEecc
Q 008100 173 QLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVD-GVSERGGHPVIRKPMR 251 (577)
Q Consensus 173 ~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~-~~~~~~~~~~~~~~~~ 251 (577)
++++|||++| .+++|+++.|.+.++++|.+|+++|+||++.++++||+.|+|++++.|+.+ +.|++||.+++.+...
T Consensus 83 ~~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 160 (497)
T 2csx_A 83 LWEFLKIEYT--KFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEP 160 (497)
T ss_dssp HHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------------------------------CCE
T ss_pred HHHHhCCcCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecC
Confidence 9999999666 789999999999999999999999999999999999999999999999987 8999999999999999
Q ss_pred cchhhHhhhhHHHhhccCCC---CCCHHHHHHHHHhhh
Q 008100 252 QWMLKITEYADRLLDDLDDL---DWPESVKEMQRNWIG 286 (577)
Q Consensus 252 ~~~~~l~~y~~~l~~~l~~~---~~p~~~~~~~~~~i~ 286 (577)
||||++++|++++.+.+++. ..|+..++...+|+.
T Consensus 161 ~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~ 198 (497)
T 2csx_A 161 SYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVK 198 (497)
T ss_dssp EEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHH
T ss_pred ceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHh
Confidence 99999999999999988753 368888888889983
No 13
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=1.8e-35 Score=327.16 Aligned_cols=193 Identities=24% Similarity=0.405 Sum_probs=180.8
Q ss_pred CCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHH
Q 008100 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRF 170 (577)
Q Consensus 91 ~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~ 170 (577)
.++++|++++++|||||. ||||||++++++|+++||+||+||+|.+++|||+||+||+.+|++.|..++++++++++.|
T Consensus 9 ~~~~~~~i~t~~P~~ng~-lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 87 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGV-PHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVF 87 (524)
T ss_dssp --CCEEEEEECCBCCSSC-CCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEeeCCCCCCCC-cccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 467889999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccC----ccc-cCCcCe
Q 008100 171 RTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG----VSE-RGGHPV 245 (577)
Q Consensus 171 ~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~----~~~-~~~~~~ 245 (577)
++++++|||++| .+++|+++.|.+.++++|.+|+++|+||++.++|+||+.|+|++++.|++++ .|+ +||.++
T Consensus 88 ~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v 165 (524)
T 2x1l_A 88 QRLQEKLNISFD--RFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPV 165 (524)
T ss_dssp HHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBE
T ss_pred HHHHHHcCCcCC--CCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcc
Confidence 999999999877 8999999999999999999999999999999999999999999999999765 466 899999
Q ss_pred EEEecccchhhHhhhhHHHhhccCCC---CCCHHHHHHHHHhhh
Q 008100 246 IRKPMRQWMLKITEYADRLLDDLDDL---DWPESVKEMQRNWIG 286 (577)
Q Consensus 246 ~~~~~~~~~~~l~~y~~~l~~~l~~~---~~p~~~~~~~~~~i~ 286 (577)
+.+.++||||++++|++++.+.+++. .+|+..++...+|+.
T Consensus 166 ~~~~~~qwF~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~ 209 (524)
T 2x1l_A 166 TWTEEQTYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVS 209 (524)
T ss_dssp EEEEEEEEEECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHT
T ss_pred eEEecCCeEeeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHH
Confidence 99999999999999999999988742 479999999999983
No 14
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=2.3e-35 Score=324.57 Aligned_cols=190 Identities=25% Similarity=0.395 Sum_probs=181.5
Q ss_pred CcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHH
Q 008100 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQ 173 (577)
Q Consensus 94 ~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (577)
++|||+.++|||||. |||||+++++++|+++||+||+||+|++++|||+||+||+.+|++.|++++++++++++.|+++
T Consensus 3 ~~~~i~~p~py~~g~-lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 81 (500)
T 2d5b_A 3 KVFYVTTPIYYVNAE-PHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRA 81 (500)
T ss_dssp CEEEEECCCEETTSC-CCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CcEEEecCCCCCCCC-cchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 579999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccc
Q 008100 174 LKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQW 253 (577)
Q Consensus 174 l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~ 253 (577)
|++||+++| .++.|+++.|.+.++++|.+|+++|+||++.++++||+.|+|++++.|+.++.|++||.+++.+.+.||
T Consensus 82 ~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~w 159 (500)
T 2d5b_A 82 WDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNY 159 (500)
T ss_dssp HHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEE
T ss_pred HHHhCCcCC--CCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCCeeeEEecCce
Confidence 999999777 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhhHHHhhccCCC---CCCHHHHHHHHHhhh
Q 008100 254 MLKITEYADRLLDDLDDL---DWPESVKEMQRNWIG 286 (577)
Q Consensus 254 ~~~l~~y~~~l~~~l~~~---~~p~~~~~~~~~~i~ 286 (577)
||++++|++.+.+.+++. ..|+..++...+|+.
T Consensus 160 f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~ 195 (500)
T 2d5b_A 160 FFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLA 195 (500)
T ss_dssp EECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHT
T ss_pred EEEcHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHh
Confidence 999999999999988763 259999999999984
No 15
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=3.5e-35 Score=327.20 Aligned_cols=196 Identities=21% Similarity=0.305 Sum_probs=179.7
Q ss_pred CCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHH
Q 008100 89 IDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNIN 168 (577)
Q Consensus 89 ~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~ 168 (577)
.+.++++|||+++||||||. |||||+++++++|+++||+||+||+|.+++|+|+||+||+.+|++.|+.++++++++.+
T Consensus 13 ~~~~~~~~~v~~~~py~ng~-lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 91 (560)
T 3h99_A 13 MTQVAKKILVTCASPYANGS-IHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQ 91 (560)
T ss_dssp ----CCEEEEEECCCBTTSC-CBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCcEEEeCCCCCCCCC-cchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 35678999999999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhc--------------
Q 008100 169 RFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVV-------------- 234 (577)
Q Consensus 169 ~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~-------------- 234 (577)
.|+++|++|||++| .++.|+++.|.+.++++|.+|+++|+||++.+.++||+.|+|+|++.+|+
T Consensus 92 ~~~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd 169 (560)
T 3h99_A 92 EHQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGD 169 (560)
T ss_dssp HHHHHHHHTTCCCS--EEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETT
T ss_pred HHHHHHHHcCCCCC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccc
Confidence 99999999999766 89999999999999999999999999999999999999999999987663
Q ss_pred ---------------cCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCCCHHHHHHHHHhhhc
Q 008100 235 ---------------DGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGR 287 (577)
Q Consensus 235 ---------------~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~ 287 (577)
+++|.+||.+++.+.++||||++++|++.|.+++++..||+.+++...+|+..
T Consensus 170 ~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 237 (560)
T 3h99_A 170 NCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFES 237 (560)
T ss_dssp BCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHH
T ss_pred hhhhccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 33455666788999999999999999999999998777999999999999953
No 16
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=100.00 E-value=2.6e-34 Score=275.46 Aligned_cols=176 Identities=19% Similarity=0.198 Sum_probs=133.6
Q ss_pred ccCCceEEEEeecCCC-CCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchhhhhhh
Q 008100 287 RSEGAEMDFRVLDSDG-QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQ 365 (577)
Q Consensus 287 ~~~~~~~~f~l~~~~~-~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (577)
+|.+++|+|++.+... ...+.+++||||||||||||+||||||+++|+...+..+.....+++....... .. +..
T Consensus 2 ~S~~i~V~F~~~~~~~~~~~~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~~~~~~i~a~~~~~~~~~~-~~---~~~ 77 (186)
T 1wny_A 2 QDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGE-GT---PVL 77 (186)
T ss_dssp -CCEEEEEEEBSCGGGGTCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEETTEEEEEEHHHHHHHHCT-TS---CEE
T ss_pred ccceEEEEEEeCCCccccCCCcEEEEEECCcchhhcceEEEECCCCcEEEEEeCCcchHHHHHHHHHHhhc-Cc---EEE
Confidence 4688999999964210 001468999999999999999999999999987665322222234444332221 11 112
Q ss_pred hcccc-cccceEEecCCC---CCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCCCcccccc
Q 008100 366 KEKTG-VFSGCYARNPAS---GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKA 441 (577)
Q Consensus 366 ~~~~~-~~~G~~~~~P~~---~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~~~~~~~~ 441 (577)
..+.| .|.|+++.||++ ++.+||+.++||++++|||+||+|||||++||++|++||||++++|+++|
T Consensus 78 ~~~~G~~l~g~~~~~P~~~~~~~~ipi~~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~L~i~~~id~~G--------- 148 (186)
T 1wny_A 78 KTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEG--------- 148 (186)
T ss_dssp EEEEHHHHTTCBBCCSSCCCCSSCCBEEECTTCCSSSSCSCEEECGGGCHHHHHHHHHHTCCCCCCBCTTS---------
T ss_pred EEEEcccccCcEEECCccccCCCEEEEEEeCcCcCCCCcccEEEcCCCCHHHHHHHHHcCCceEeeeCCCc---------
Confidence 23344 599999999996 88999999999999999999999999999999999999999999997642
Q ss_pred ccccceEeccCccccccccCCCCHHHHHHHHHHHHHhcCCCceeee
Q 008100 442 YTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVN 487 (577)
Q Consensus 442 ~~~~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~~~~~~ 487 (577)
.+..+ + +.||..++|+.+|+++|.+.|.+.++..
T Consensus 149 -----~~~~~-----~--~~Gl~v~~A~~~Ii~~L~~~g~l~~~~~ 182 (186)
T 1wny_A 149 -----KLLVE-----P--FKGLYFREANRAILRDLRGRGLLFKEES 182 (186)
T ss_dssp -----BBCST-----T--CTTCBHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred -----cCccC-----C--CCCcCHHHHHHHHHHHHHHCCCeeccee
Confidence 22211 2 7899999999999999999987765543
No 17
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=6.5e-34 Score=316.83 Aligned_cols=201 Identities=21% Similarity=0.298 Sum_probs=180.5
Q ss_pred CCccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCch
Q 008100 81 RTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPK 160 (577)
Q Consensus 81 ~~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~ 160 (577)
..|.+.. ..++++|||+.++|||||. |||||+++++++|+++||+||+||+|.++.|+|+||++|+.+|++.|..++
T Consensus 15 ~~~~~~~--~~~~~~~~i~~~~py~ng~-lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~ 91 (564)
T 3kfl_A 15 QTQGPGS--MKKQKVFFATTPIYYVNAS-PHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPM 91 (564)
T ss_dssp -----------CCCCEEEEEEEEECSSC-CCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHH
T ss_pred hhcCCcc--ccCCCCEEEeCCCCCCCCC-CCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHH
Confidence 4565542 3456789999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccC----
Q 008100 161 ITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG---- 236 (577)
Q Consensus 161 ~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~---- 236 (577)
++++++++.|++++++|||++| .+++|+++.|.+.++++|.+|+++|+||++...++||+.|+++|++.|+.++
T Consensus 92 ~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~ 169 (564)
T 3kfl_A 92 DFTTSVSSEFKQCFQEMNYDMN--YFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRD 169 (564)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHcCCCCC--ccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCC
Confidence 9999999999999999999998 7899999999999999999999999999999999999999999999999754
Q ss_pred --cc---ccCCcCeEEEecccchhhHhhhhHHHhhccCC---CCCCHHHHHHHHHhhh
Q 008100 237 --VS---ERGGHPVIRKPMRQWMLKITEYADRLLDDLDD---LDWPESVKEMQRNWIG 286 (577)
Q Consensus 237 --~~---~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~---~~~p~~~~~~~~~~i~ 286 (577)
.| ..+|.+++.+.++||||++++|+++|.+++++ ..+|+..++...+|+.
T Consensus 170 g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~ 227 (564)
T 3kfl_A 170 GKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNCIVPEFRRREVIKTVE 227 (564)
T ss_dssp SCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHH
T ss_pred CCEeccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHh
Confidence 23 14699999999999999999999999999874 3479999999999995
No 18
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=1.9e-33 Score=311.62 Aligned_cols=192 Identities=27% Similarity=0.385 Sum_probs=181.8
Q ss_pred CCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHH
Q 008100 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR 171 (577)
Q Consensus 92 ~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (577)
++++|||+.++|||||. |||||+++++++|+++||+||+||+|.++.|+|+||++|+.+|.+.|..++++++++++.|+
T Consensus 23 ~~~~~~i~~p~pypng~-lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~ 101 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGK-PHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFR 101 (536)
T ss_dssp -CCEEEEEECCBCCSSC-CCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCCCCCC-cCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45689999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccC----ccccCCcCeEE
Q 008100 172 TQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG----VSERGGHPVIR 247 (577)
Q Consensus 172 ~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~----~~~~~~~~~~~ 247 (577)
++|++|||++| .++.|+++.|.+.++++|.+|+++|+||++..+++||+.|++++++.|++.+ .|..||.+++.
T Consensus 102 ~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~ 179 (536)
T 4dlp_A 102 RMAEVLNSSND--DYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEW 179 (536)
T ss_dssp HHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEE
T ss_pred HHHHHcCCCCC--cceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceE
Confidence 99999999888 8899999999999999999999999999999999999999999999999743 58899999999
Q ss_pred EecccchhhHhhhhHHHhhccCCC---CCCHHHHHHHHHhhh
Q 008100 248 KPMRQWMLKITEYADRLLDDLDDL---DWPESVKEMQRNWIG 286 (577)
Q Consensus 248 ~~~~~~~~~l~~y~~~l~~~l~~~---~~p~~~~~~~~~~i~ 286 (577)
+..+||||++++|++.|.+.++.. .+|+..++...+|+.
T Consensus 180 ~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~~l~ 221 (536)
T 4dlp_A 180 VEEESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVK 221 (536)
T ss_dssp EEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHH
T ss_pred EeccceEEecHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHh
Confidence 999999999999999999998753 479999999999994
No 19
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=100.00 E-value=8.2e-33 Score=254.85 Aligned_cols=142 Identities=27% Similarity=0.350 Sum_probs=119.1
Q ss_pred cCCceEEEEeecCCCCCccceEEEecCCCCccccCcEEEEcCCCccchhhccccchhhHHHHHHHHhcccchhhhhhhhc
Q 008100 288 SEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKE 367 (577)
Q Consensus 288 ~~~~~~~f~l~~~~~~~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (577)
+..++++|++ +. +.+++||||||||||||+||||||++++.
T Consensus 4 ~~~~~v~F~~-~~-----~~~l~i~TTrP~Tl~g~~aiav~P~~~~~--------------------------------- 44 (147)
T 1wka_A 4 GKLYTLRYEV-EG-----GGFIEIATVRPETVFADQAIAVHPEDERY--------------------------------- 44 (147)
T ss_dssp CEEEEEEEEB-TT-----SCEEEEEESCGGGGGGCCEEEECTTCTTT---------------------------------
T ss_pred ceEEEEEEEC-CC-----CcEEEEEECCceecccceEEEECCCCchH---------------------------------
Confidence 4567899999 42 36899999999999999999999998631
Q ss_pred ccccccceEEecCCCCCeeeEEeecccccCCCCCceeccCCCChhhHHHHHHcCCeeEEeecCCCCCCccccccccccce
Q 008100 368 KTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGL 447 (577)
Q Consensus 368 ~~~~~~G~~~~~P~~~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k~~L~i~~~v~~~~~~~~~~~~~~~~~g~ 447 (577)
..|.|+++.||++++.+||+.++||++++|||+||+|||||++||++|++|||+++++|+++| .
T Consensus 45 --~~l~g~~~~~P~~~~~ipI~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~id~~G--------------~ 108 (147)
T 1wka_A 45 --RHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEG--------------R 108 (147)
T ss_dssp --GGGTTCEEECTTSSCEEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCSBCTTS--------------B
T ss_pred --HHhcCCEEECCCCCCeeEEEEeCccccCCCCCcEEEccCCCHHHHHHHHHcCCCcceEECCCC--------------E
Confidence 136799999999999999999999999999999999999999999999999999999998653 2
Q ss_pred EeccCccccccccCCCCHHHHHHHHHHHHHhcCCCceeee
Q 008100 448 IVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVN 487 (577)
Q Consensus 448 ~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~~~~~~ 487 (577)
+ ++.. ....+.|+.+++|+.+|+++|.+.|.+.+..+
T Consensus 109 ~-~~~~--~~~~~~Gl~~~~A~~~Ii~~L~~~g~l~~~~~ 145 (147)
T 1wka_A 109 M-EGER--VPEALRGLDRFEARRKAVELFREAGHLVKEED 145 (147)
T ss_dssp B-CSTT--SCGGGTTSBHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred E-cCCC--cccccCCcCHHHHHHHHHHHHHHCCCeeeeeE
Confidence 3 2110 00138999999999999999999987766544
No 20
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.7e-29 Score=252.92 Aligned_cols=185 Identities=20% Similarity=0.274 Sum_probs=126.2
Q ss_pred eEEEEeecCCCC------CccceEEEecCCCCccccCcEEEEcCCCccchhhccc-cchhhHHHHHH-HHhcc--cchhh
Q 008100 292 EMDFRVLDSDGQ------ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVST-TQSQNIEEYKN-LASRK--SDLER 361 (577)
Q Consensus 292 ~~~f~l~~~~~~------~~~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~ 361 (577)
.|+|++.+.... ..+.+|+||||||||||||+||||||+++|+...+.. +.....++... +.... +....
T Consensus 9 ~ikf~v~~~~~~~~~~~~~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~ 88 (252)
T 2wfd_A 9 LLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFTKDNGV 88 (252)
T ss_dssp EEEEEEESSCCGGGGGGTTSCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECTTSCEEEECHHHHHHHHTTTSSSSTTC
T ss_pred EEEEEccCcchhhhhhccCCCCEEEEEECChHHHhhhheEEECCCCcEEEEEecCCcEEEEhhhhHHHHHHHHhhccCcc
Confidence 478887542210 2357999999999999999999999999998654311 11111111111 11010 00011
Q ss_pred hhhhhcccc-cccceEEecCCCC-CeeeEEeecccccCCCCCceeccCCCChhhHH----------HHHHcCCe------
Q 008100 362 TELQKEKTG-VFSGCYARNPASG-EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHE----------FALKFDIS------ 423 (577)
Q Consensus 362 ~~~~~~~~~-~~~G~~~~~P~~~-~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~----------~~~k~~L~------ 423 (577)
.+....+.| .|.|.++.||+++ +.+||+.++||++++|||+||+|||||++||+ +|++||||
T Consensus 89 ~~~~~~~~G~~l~G~~~~~Pl~~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~D~~~~~~l~~~~~fa~kygL~~~~~~~ 168 (252)
T 2wfd_A 89 VPVVKELMGEEILGASLSAPLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMVLP 168 (252)
T ss_dssp CCEEEECCHHHHTTCEEECSSCSSSCEEEEECSCCCSSSSCSSEEECTTTCHHHHHHHHHHHHCSHHHHTTTCCGGGTTT
T ss_pred cEEEEEEEcccccCCEEEcCCCCCceeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHhhhccchhHHHHcCCCchhccc
Confidence 111223445 4999999999998 58999999999999999999999999999999 58899998
Q ss_pred --eEEeecCCCC-CCc-------------cc--------cccccc---cceEeccCccccccccCCCCHHHHHHHHHHHH
Q 008100 424 --IHSVVMPDDE-SSS-------------QS--------EKAYTG---EGLIVNSSNLISGLDINGLSCQEATSKVIEWA 476 (577)
Q Consensus 424 --i~~~v~~~~~-~~~-------------~~--------~~~~~~---~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l 476 (577)
++.+|+.++. ... .. ...|.. .|+++ +. .++|+.+++|+.+|+++|
T Consensus 169 ~~~~~vI~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~~~~~~y~~~~~~G~~~-~~------~~~Gl~v~eA~~~Ii~~L 241 (252)
T 2wfd_A 169 FEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIML-VD------GFKGQKVQDVKKTIQKKM 241 (252)
T ss_dssp CCCCCCEEBTTTBSSHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEEC-ST------TSTTCBHHHHHHHHHHHH
T ss_pred cCceeEEecCcccccchhhhhhhccccCcchhhhhhhhhhhhccccccCceEe-ee------ccCCeEHHHHHHHHHHHH
Confidence 5677765431 100 00 112332 57776 32 599999999999999999
Q ss_pred HhcCCCc
Q 008100 477 EKTGNGK 483 (577)
Q Consensus 477 ~~~g~~~ 483 (577)
.+.|.+.
T Consensus 242 ~~~g~~~ 248 (252)
T 2wfd_A 242 IDAGDAL 248 (252)
T ss_dssp HHTTSEE
T ss_pred HHCCCCc
Confidence 9988654
No 21
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=99.96 E-value=2.2e-29 Score=252.93 Aligned_cols=175 Identities=17% Similarity=0.219 Sum_probs=121.6
Q ss_pred cceEEEecCCCCccccCcEEEEcCCCccchhhccccc----hhhHHHHHHHHhcccchhhhhhhhcccc-cccceEEecC
Q 008100 306 DIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQ----SQNIEEYKNLASRKSDLERTELQKEKTG-VFSGCYARNP 380 (577)
Q Consensus 306 ~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~~~~P 380 (577)
+.+|+||||||||||||+||||||+++|+...+..+. .....+...................+.| .|.|.++.||
T Consensus 32 ~~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~P 111 (261)
T 2wfg_A 32 KVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDAP 111 (261)
T ss_dssp EEEEEEEESCGGGGGGCCEEEECTTCEEEEEECSTTEEEEECHHHHHHHTTTTCSSSTTCCCCSEEEEHHHHTTCEEECT
T ss_pred CCEEEEEECCchHHhhhheEEECCCCceEEEEecCceEEEhHHHHHHHHHHHhhhhcccccEEEEEEecccccCCEEECC
Confidence 5789999999999999999999999999865442110 0111111110000000001111123344 5999999999
Q ss_pred CC-CCeeeEEeecccccCCCCCceeccCCCChhhHHHHHH-------cC-------CeeEEeecCCC-CCCcc-------
Q 008100 381 AS-GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALK-------FD-------ISIHSVVMPDD-ESSSQ------- 437 (577)
Q Consensus 381 ~~-~~~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k-------~~-------L~i~~~v~~~~-~~~~~------- 437 (577)
++ ++.+||++++||++++|||+||+|||||++||++|++ || ||++++|++.+ +....
T Consensus 112 l~~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~Dy~~~~kl~~~~~~ygi~~~~~~L~i~~vId~~~~g~~~~~~~~~~~ 191 (261)
T 2wfg_A 112 YAVNKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLVNDL 191 (261)
T ss_dssp TCSSCSEEEEECTTCCTTSTTSCEEECTTTCHHHHHHHHHHHHSTTTTTCCGGGCCCCCCCCEEBTTTBTCHHHHHHHHT
T ss_pred CCCCceeEEEeeccccCCCCCCeeEEcCCCCHHHHHHHHHhhcchhhcCCccccccCCceeEEcCcccCccchhhhhccc
Confidence 98 5789999999999999999999999999999999999 99 89999998631 11110
Q ss_pred ------c--------cccccc---cceEeccCccccccccCCCCHHHHHHHHHHHHHhcCCCceeee
Q 008100 438 ------S--------EKAYTG---EGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVN 487 (577)
Q Consensus 438 ------~--------~~~~~~---~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~~~~~~ 487 (577)
. ...|.. .|.+. + ..++|+.+++|+.+|+++|.+.|.+....+
T Consensus 192 ~i~s~~d~~~l~~a~~~~y~~G~~~g~~~-~------g~f~Gl~v~eA~~~Ii~~L~~~G~~~~~~~ 251 (261)
T 2wfg_A 192 KIQSPKDSVQLANAKELAYKEGFYNGTML-I------GKYKGDKVEDAKPKVKQDLIDEGLAFVYNE 251 (261)
T ss_dssp TCCSTTCHHHHHHHHHHHHHHHHHHCEEC-S------STTTTSBHHHHHHHHHHHHHHTTSEEEECC
T ss_pred cccccchhhhhhhhhhhhhhcccccceEe-c------cccCCeEHHHHHHHHHHHHHHCCCeeeeee
Confidence 0 011211 23332 2 158999999999999999999987765543
No 22
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=99.95 E-value=1.1e-28 Score=247.68 Aligned_cols=171 Identities=16% Similarity=0.158 Sum_probs=121.4
Q ss_pred cceEEEecCCCCccccCcEEEEcCCCccchhhccc-cchhhHHHHHHHHhcccch-----hhhh-hhhcccccccceEEe
Q 008100 306 DIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVST-TQSQNIEEYKNLASRKSDL-----ERTE-LQKEKTGVFSGCYAR 378 (577)
Q Consensus 306 ~~~l~iwTT~P~Tl~an~av~V~p~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~G~~~~ 378 (577)
+.+++||||||||||||+||||||+.+|+...+.. +.....++........... +... +...++..|.|.++.
T Consensus 79 ~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~~~ge~~IvAe~l~e~l~~q~~~~~~~~~~~~vl~~~kG~eL~G~~~~ 158 (311)
T 3pz6_A 79 KVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVSEHAAVNMAHQGLNNNKPFGELDFISEISGSDLLLATVR 158 (311)
T ss_dssp EEEEEEEESCGGGGGGCCEEEECTTCEEEEEEEETTEEEEEEHHHHHHHHTTTCSSSCCTTCCCEEEEEEHHHHTTCEEE
T ss_pred CEEEEEEECCchhhhhheEEEECCCCcEEEEEECCCCEEEEeHHHHHHHHHhcccccccCCCcEEEEEEEhHHhcCCEEE
Confidence 57999999999999999999999999998665521 1111112222211111000 1111 222344479999999
Q ss_pred cCCCCC-eeeEEeecccccCCCCCceeccCCCChhhHHHHHH-----------cCC---------eeEEeecCCC-CCCc
Q 008100 379 NPASGE-AIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALK-----------FDI---------SIHSVVMPDD-ESSS 436 (577)
Q Consensus 379 ~P~~~~-~ipIi~~d~V~~~~GTGiVh~aPaHg~~Dy~~~~k-----------~~L---------~i~~~v~~~~-~~~~ 436 (577)
||++++ .+||+.++||++++|||+||+|||||++||.++++ ||| +++.+|+..+ +.+.
T Consensus 159 hPl~~~~~ipIl~ad~Vt~d~GTGiVh~aPaHg~dDy~~~~d~Lk~k~~~~~Kygi~~e~v~~~~e~ipvI~~~g~G~~~ 238 (311)
T 3pz6_A 159 APLSPYEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKDILENRNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGTLS 238 (311)
T ss_dssp CTTCSSSCEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHHTTGGGHHHHTTCCHHHHTTTSCCCCCEEBTTTBSSH
T ss_pred CCCCCCCeeEEEecCcCccCCCcceEEeCCCCCHHHHHHHHHHhhccHHHHHHcCCchHHhccCCCeEEEEecCCCCCcc
Confidence 999996 89999999999999999999999999999996666 774 7777776332 2211
Q ss_pred --------------c-------cccccc---ccceEeccCccccccccCCCCHHHHHHHHHHHHHhcCCCc
Q 008100 437 --------------Q-------SEKAYT---GEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGK 483 (577)
Q Consensus 437 --------------~-------~~~~~~---~~g~~v~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~g~~~ 483 (577)
+ ....|. ..|+|+ +. .+.|+.+++|+.+++++|.+.|.+.
T Consensus 239 A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~~Gvm~-~g------~~~G~~V~eAk~~i~~~L~~~g~a~ 302 (311)
T 3pz6_A 239 AVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMK-MG------PFAGQSVKDCKQSCRDLLVQNNQCI 302 (311)
T ss_dssp HHHHHHHTTC----CHHHHHHHHHHHHHHHHHHCEEC-SS------TTTTSBHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCEEe-ee------ccCCeEHHHHHHHHHHHHHHCCCce
Confidence 1 013454 258887 32 5899999999999999999988653
No 23
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.88 E-value=3.5e-23 Score=222.94 Aligned_cols=136 Identities=21% Similarity=0.183 Sum_probs=122.0
Q ss_pred CccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchh
Q 008100 82 TFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKI 161 (577)
Q Consensus 82 ~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~ 161 (577)
.|.+. ++++.++|+| .|+++|. +||||+|+++++|+++||+||+||+|.|+.|+|+||.||+.+|.+.|..+++
T Consensus 17 ~f~p~---~~~~v~~Yvc--GPtvy~~-~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e 90 (462)
T 3tqo_A 17 IFKPI---ESGKVKLYVC--GMTVYDY-MHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAA 90 (462)
T ss_dssp ECCCS---STTEEEEEEC--CCBTTSC-CBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHH
T ss_pred ccccC---CCCeEEEEeC--CCcCCCC-CchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHH
Confidence 45543 3455667776 7899998 9999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeee-ccCcccCCCCCc
Q 008100 162 TTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA-EVPVNWCPALGT 226 (577)
Q Consensus 162 ~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~-~~~v~wc~~~~t 226 (577)
+++++++.|++++++|||+.||..+..| +|+..++++|++|+++|++|++ .+.|+||+.|-.
T Consensus 91 ~a~~~~~~f~~d~~~LgI~~d~~~praT---e~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~ 153 (462)
T 3tqo_A 91 LAERFIQILHEDEKALRVLSPDQEPRAT---QYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFK 153 (462)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCSBCCBGG---GCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCT
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccChh---hHHHHHHHHHHHHHHCCCEEEecCCcEEecccccc
Confidence 9999999999999999999996554444 8999999999999999999999 789999998763
No 24
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.87 E-value=5.4e-23 Score=222.52 Aligned_cols=127 Identities=18% Similarity=0.108 Sum_probs=103.2
Q ss_pred CCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccc----------cccChHHHHHHHHhCCCchhh
Q 008100 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGW----------DAFGLPAEQYAIETGTHPKIT 162 (577)
Q Consensus 93 ~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~----------D~~Glpie~~a~~~g~~~~~~ 162 (577)
+.++|+| +|+++|. +|||||+++|++|+++||+||+||+|.|++|+ |+||+||+.+|.+.|+.++++
T Consensus 42 ~v~~Yvc--gPTvYg~-~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~ 118 (501)
T 3sp1_A 42 NVKVYAC--GPTVYNY-AHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEI 118 (501)
T ss_dssp CEEEEEC--CCBCSSC-CCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHH
T ss_pred cceEEeC--CCcCCCC-cchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHH
Confidence 5678887 6888898 99999999999999999999999999999765 677999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceeeeccCcccCCCCC
Q 008100 163 TLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALG 225 (577)
Q Consensus 163 ~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~ 225 (577)
++++++.|+++|++|||+.|| +.+.+++|+..++++|++|+++|+||++.+.||||+.+-
T Consensus 119 a~~~~~~f~~d~~~Lgi~~d~---~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~f 178 (501)
T 3sp1_A 119 SEFFTEAFFNDCRKLNIVYPD---KVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCF 178 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCS---EEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGGC
T ss_pred HHHHHHHHHHHHHHcCCCCCC---cccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCcc
Confidence 999999999999999999996 445688999999999999999999999999999999873
No 25
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.83 E-value=4.8e-21 Score=205.46 Aligned_cols=124 Identities=22% Similarity=0.194 Sum_probs=111.3
Q ss_pred CCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHH
Q 008100 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR 171 (577)
Q Consensus 92 ~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (577)
++.++|++ .|++||. +||||+|+++++|+++||+|++||+|.++.|+|+||.+|+.+|.+.|..++++++++++.|+
T Consensus 38 ~~v~~y~~--gPt~yg~-~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~ 114 (414)
T 3c8z_A 38 PTATMYVC--GITPYDA-THLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFR 114 (414)
T ss_dssp SEEEEEEC--CCCTTSC-CBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCceEEeC--CCcCCCC-cCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44567776 7889998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCC-CCCCCceeCCChhhHHHHHHHHHHHHHCCceeeec----cCcccCC
Q 008100 172 TQLKSLGFS-YDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAE----VPVNWCP 222 (577)
Q Consensus 172 ~~l~~lGi~-~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~----~~v~wc~ 222 (577)
++|++|||+ +| .+..|.+ |.+.++++|++|+++|++|++. +.++|+.
T Consensus 115 ~~~~~Lgi~~~d--~~~r~t~--~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~ 166 (414)
T 3c8z_A 115 EDMAALRVLPPH--DYVAATD--AIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRA 166 (414)
T ss_dssp HHHHHTTCCCCS--EEEEGGG--CHHHHHHHHHHHHHHTSEEECSCSSCCCEEECT
T ss_pred HHHHHcCCCCCc--ceecccc--hHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEc
Confidence 999999998 77 5666654 8889999999999999999987 4455443
No 26
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.78 E-value=1.5e-19 Score=196.07 Aligned_cols=134 Identities=21% Similarity=0.170 Sum_probs=118.5
Q ss_pred CccCCCCCCCCCCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchh
Q 008100 82 TFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKI 161 (577)
Q Consensus 82 ~f~~~~~~~~~~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~ 161 (577)
.|.+. ++++.++|++ .|+++|. +||||+|+++++|+++||+|+.||+|.++.|+|++|.+|+.+|.+.|..+++
T Consensus 14 ~f~p~---~~~~v~~yv~--gPt~y~~-~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~ 87 (461)
T 1li5_A 14 EFKPI---HAGEVGMYVC--GITVYDL-CHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVA 87 (461)
T ss_dssp ECCCS---STTEEEEEEC--CCBSSSC-CBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHH
T ss_pred ccccC---CCCCeeEEEc--CCcCCCC-CcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHH
Confidence 45554 4456678887 5667787 9999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCC-CCCCceeCCChhhHHHHHHHHHHHHHCCceeee-ccCcccCCCCC
Q 008100 162 TTLRNINRFRTQLKSLGFSY-DWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA-EVPVNWCPALG 225 (577)
Q Consensus 162 ~~~~~~~~~~~~l~~lGi~~-Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~-~~~v~wc~~~~ 225 (577)
+++++++.|++++++|||.+ | .+..|+ +|.+.+++++++|.++|++|++ .+.|+||+.|-
T Consensus 88 ~~~~~~~~f~~~~~~LgI~~~d--~~~r~t--~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~ 149 (461)
T 1li5_A 88 MVDRMIAEMHKDFDALNILRPD--MEPRAT--HHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD 149 (461)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCS--BCCBGG--GCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGC
T ss_pred HHHHHHHHHHHHHHHcCCCCCc--cccccc--chHHHHHHHHHHHHHCCCEEEecCCCEEEecccc
Confidence 99999999999999999987 5 344444 4889999999999999999999 89999998763
No 27
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.46 E-value=4.6e-15 Score=163.57 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=93.0
Q ss_pred EEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccC--hHH---HHHHHHh--CCCc---------
Q 008100 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFG--LPA---EQYAIET--GTHP--------- 159 (577)
Q Consensus 96 f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~G--lpi---e~~a~~~--g~~~--------- 159 (577)
.|++.+.|+|||. |||||+|++++.|+++||++++|++|.++.++|++| .+| ..++.+. |..+
T Consensus 21 ~yv~~tgPsPtG~-lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~ 99 (523)
T 1irx_A 21 KYVVESGITPSGY-VHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGC 99 (523)
T ss_dssp EEEEEEEECCSSC-CCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSS
T ss_pred eEEECCCCCCCCC-cccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhh
Confidence 5677778999998 999999999999999999999999999999999999 444 2334444 6665
Q ss_pred -hhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHH-HHHHHHHHHHHCC-cee
Q 008100 160 -KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYK-WTQWIFLQLLKRG-LAY 212 (577)
Q Consensus 160 -~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~-~v~~~f~~L~~kG-liy 212 (577)
+++++++.+.|+++|+.|||.+| . |++++. |.+ .+++++.+|.++| .||
T Consensus 100 ~~~~~~~~~~~~~~~l~~Lgi~~D--~-~~~se~-~~~g~~~~~i~~L~~~G~~iy 151 (523)
T 1irx_A 100 HESYAEHFMRKFEEEVEKLGIEVD--L-LYASEL-YKRGEYSEEIRLAFEKRDKIM 151 (523)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCCCE--E-EEHHHH-HHTTTTHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCce--E-Eechhh-ccchHHHHHHHHHHHchHHHH
Confidence 77899999999999999999766 3 344433 766 8899999999999 444
No 28
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.40 E-value=2.9e-13 Score=151.88 Aligned_cols=133 Identities=20% Similarity=0.171 Sum_probs=105.4
Q ss_pred CCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHH----------------------
Q 008100 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQ---------------------- 150 (577)
Q Consensus 93 ~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~---------------------- 150 (577)
.++..|.-.-|+|||+ +||||+|+.+++|+++|++++.||+|.+...++++|..+..
T Consensus 118 ~~~V~ve~~spN~~~~-~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~ 196 (629)
T 2zue_A 118 GKKVIVEHTSVNPTKP-LHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRER 196 (629)
T ss_dssp TCEEEEECCCCCTTSC-CBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeeCCCCCCC-CccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhccc
Confidence 3456676678999998 99999999999999999999999999999988888776421
Q ss_pred -----------------HHHHhC--------------------CCchhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChh
Q 008100 151 -----------------YAIETG--------------------THPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPA 193 (577)
Q Consensus 151 -----------------~a~~~g--------------------~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~ 193 (577)
.+.+.+ ...+..++..++.|++++++|||.+| .+..|++..
T Consensus 197 ~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D--~~~~es~~~ 274 (629)
T 2zue_A 197 GLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYD--LLVWESDIV 274 (629)
T ss_dssp TSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCS--EEEEHHHHH
T ss_pred ccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccc--cccCcCccc
Confidence 111111 12255677788999999999999987 777887776
Q ss_pred hHHHHHHHHHHHHHCCcee---eeccCcccCCCCCccC
Q 008100 194 YYKWTQWIFLQLLKRGLAY---QAEVPVNWCPALGTVL 228 (577)
Q Consensus 194 ~~~~v~~~f~~L~~kGliy---~~~~~v~wc~~~~t~L 228 (577)
+...+..++.+|.++|++| ++.....||..|...-
T Consensus 275 ~~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~g 312 (629)
T 2zue_A 275 RRKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKLF 312 (629)
T ss_dssp HTTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTTTC
T ss_pred cchhHHHHHHHHHHCCCccccccCCcCCcEEEECcccC
Confidence 6889999999999999999 3555566677776653
No 29
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.38 E-value=4.9e-13 Score=149.38 Aligned_cols=129 Identities=20% Similarity=0.142 Sum_probs=99.9
Q ss_pred cEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHH------------------------
Q 008100 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQ------------------------ 150 (577)
Q Consensus 95 ~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~------------------------ 150 (577)
+..|.-.-|+|||+ +||||+|+++++|+++|++++.||+|.++..+++.|..+..
T Consensus 104 ~v~ve~~spn~~~~-~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~ 182 (592)
T 1iq0_A 104 VVLVEHTSVNPNKE-LHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGR 182 (592)
T ss_dssp EEEEECCCCCTTSC-CBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHH
T ss_pred eEEEEeeCCCCCCC-CcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHH
Confidence 46777788999998 99999999999999999999999999998666666533210
Q ss_pred ----------------------HHHHhCCCchhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHHC
Q 008100 151 ----------------------YAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKR 208 (577)
Q Consensus 151 ----------------------~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~k 208 (577)
.+.+.|. .+..++.+++.|++++++|||.+| .+..|.+..+...+++++.+|.++
T Consensus 183 ~y~~~~~~~~~~~~~~~a~~~~~~~e~g~-~~~~~~~~~~~~~~~~~~LgI~~D--~~~~es~~~~~~~v~~~~~~L~~k 259 (592)
T 1iq0_A 183 AYVRLHQDPEYERLQPAIEEVLHALERGE-LREEVNRILLAQMATMHALNARYD--LLVWESDIVRAGLLQKALALLEQS 259 (592)
T ss_dssp HHHHHHHCTTTGGGHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHHHHTTCCCS--EEEEHHHHHHTTHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhCCchH-HHHHHHHHHHHHHHHHHHcCCEeE--EeccCCcccccchHHHHHHHHHHC
Confidence 0123343 367788889999999999999887 777777766688999999999999
Q ss_pred Cceee---eccCcccCCCCCcc
Q 008100 209 GLAYQ---AEVPVNWCPALGTV 227 (577)
Q Consensus 209 Gliy~---~~~~v~wc~~~~t~ 227 (577)
|++|+ +.....||..|...
T Consensus 260 G~~y~~~~g~~~G~~~~~~~~~ 281 (592)
T 1iq0_A 260 PHVFRPREGKYAGALVMDASPV 281 (592)
T ss_dssp TTEECCSSSTTTTCEEEECTTT
T ss_pred CCcccCcccCcCCCEEEechhc
Confidence 99993 23333445455443
No 30
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.22 E-value=2.3e-11 Score=135.67 Aligned_cols=124 Identities=18% Similarity=0.109 Sum_probs=97.1
Q ss_pred CCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHH---------------------
Q 008100 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQY--------------------- 151 (577)
Q Consensus 93 ~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~--------------------- 151 (577)
.++..|--.-|+|+|+ +||||+|+.+++|+++|+++..||+|.++....++|..+...
T Consensus 142 ~~~V~ve~~spN~~~p-lHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l 220 (607)
T 1f7u_A 142 NKKVIIEFSSPNIAKP-FHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHL 220 (607)
T ss_dssp CCEEEEECCCCBTTSC-CBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHH
T ss_pred CCeEEEEecCCCCCCC-CccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHH
Confidence 3457777778999999 999999999999999999999999999999988887764211
Q ss_pred ---------------------------HHH------hCCC-----chhhHHHHHHHHHHHHHHhCCCCCCCCceeCCChh
Q 008100 152 ---------------------------AIE------TGTH-----PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPA 193 (577)
Q Consensus 152 ---------------------------a~~------~g~~-----~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~ 193 (577)
|.+ .|.. .+.+++..++.|++++++|||.+| .+..++ .
T Consensus 221 ~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD--~~~~ES--~ 296 (607)
T 1f7u_A 221 FDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYD--VYSGES--Q 296 (607)
T ss_dssp HHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCS--EEEEGG--G
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcce--eecCcc--h
Confidence 111 1221 134566778889999999999887 554444 3
Q ss_pred hH-HHHHHHHHHHHHCCceeeeccCcccC
Q 008100 194 YY-KWTQWIFLQLLKRGLAYQAEVPVNWC 221 (577)
Q Consensus 194 ~~-~~v~~~f~~L~~kGliy~~~~~v~wc 221 (577)
|. ..+..++..|.++|++|+.++.++..
T Consensus 297 ~~~~~~~~vi~~L~~kG~~ye~dGa~~~~ 325 (607)
T 1f7u_A 297 VSKESMLKAIDLFKEKGLTHEDKGAVLID 325 (607)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEETTEEEEE
T ss_pred hhhhHHHHHHHHHHhCCCEEEECCcEEEE
Confidence 44 67899999999999999988877653
No 31
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.04 E-value=1.4e-09 Score=117.47 Aligned_cols=122 Identities=20% Similarity=0.213 Sum_probs=91.1
Q ss_pred CcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHH-------HH--hCCC---ch-
Q 008100 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYA-------IE--TGTH---PK- 160 (577)
Q Consensus 94 ~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a-------~~--~g~~---~~- 160 (577)
++.+|=-..|+|+|+ |||||+|+.+++|+++|++++.||+|....-..+.|..+...+ .+ .+.. |.
T Consensus 30 ~~v~vE~ss~n~~~~-~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p~~ 108 (464)
T 3fnr_A 30 ESFLLEYVSANPTGP-LHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPEQ 108 (464)
T ss_dssp CEEEEECCCCCSSSS-CBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCCSS
T ss_pred CEEEEEeCCCCCCCC-CccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCchh
Confidence 444444458999998 9999999999999999999999999999999999998763221 11 1111 10
Q ss_pred ---------------------------------hhHHHHHHHHHHHHHHhCCCCCCCCceeCCChhhHHHHHHHHHHHHH
Q 008100 161 ---------------------------------ITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLK 207 (577)
Q Consensus 161 ---------------------------------~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~ 207 (577)
...+..++.+++++++|||.+| .++...+ -|. .+..++..|.+
T Consensus 109 ~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD--~~~~Ess-~~~-~~~~vv~~L~~ 184 (464)
T 3fnr_A 109 YYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKID--SYVSERS-YYD-ALNATLESLKE 184 (464)
T ss_dssp CCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCS--CEEEGGG-GST-THHHHHHHHHH
T ss_pred hcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCce--eecCHHH-HHH-HHHHHHHHHHH
Confidence 0012235668899999999998 5555533 333 78999999999
Q ss_pred CCceeeeccCccc
Q 008100 208 RGLAYQAEVPVNW 220 (577)
Q Consensus 208 kGliy~~~~~v~w 220 (577)
+|++|+.++.++.
T Consensus 185 ~g~~~e~dGa~~~ 197 (464)
T 3fnr_A 185 HKGIYEQEGKIWL 197 (464)
T ss_dssp TTCEEEETTEEEE
T ss_pred CCCEEEeCCeEEE
Confidence 9999999887654
No 32
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=98.34 E-value=4.6e-07 Score=92.39 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=68.2
Q ss_pred CCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCC
Q 008100 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (577)
Q Consensus 102 pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~ 181 (577)
+|.|||. |||||+++.++. |+..+++.+.++.-+|+...+ .....+.+.|.++|+.||+
T Consensus 11 APsPtG~-LHiG~~rtal~n-----~l~Ar~~~g~~ilRieDtD~~-------------R~~~~~~~~I~~dL~~LGl-- 69 (298)
T 1nzj_A 11 APSPSGE-LHFGSLIAALGS-----YLQARARQGRWLVRIEDIDPP-------------REVPGAAETILRQLEHYGL-- 69 (298)
T ss_dssp CCCTTSC-CCHHHHHHHHHH-----HHHHHHTTCEEEEEECCSCGG-------------GSCTTHHHHHHHHHHHTTC--
T ss_pred CcCCCCC-ccHHHHHHHHHH-----HHHHHhcCCeEEEEEecCCch-------------hhHHHHHHHHHHHHHHcCC--
Confidence 8999998 999999999854 444555566777777765432 2235678999999999999
Q ss_pred CCCC-ceeCCChhhHHHHHHHHHHHHHCCceeee
Q 008100 182 DWNR-EISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (577)
Q Consensus 182 Dw~~-~~~T~d~~~~~~v~~~f~~L~~kGliy~~ 214 (577)
+|+. .++.+ ++.+....++.+|.++|++|.-
T Consensus 70 ~~D~~~~~qS--er~~~y~~~~~~L~~~G~aY~c 101 (298)
T 1nzj_A 70 HWDGDVLWQS--QRHDAYREALAWLHEQGLSYYC 101 (298)
T ss_dssp CCSSCCEEGG--GCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCCeeee--CCHHHHHHHHHHHHHcCCcccC
Confidence 5555 44433 4667788999999999999973
No 33
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=98.15 E-value=2e-06 Score=93.82 Aligned_cols=93 Identities=24% Similarity=0.324 Sum_probs=73.5
Q ss_pred EEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh
Q 008100 98 VLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSL 177 (577)
Q Consensus 98 i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 177 (577)
++==+|.|||. ||||||++.++...++| +|.+.++.-+|+...+ ....++.+.|.++|+.|
T Consensus 98 ~tRFaPsPtG~-LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD~~-------------R~~~e~~~~I~edL~wL 158 (553)
T 3aii_A 98 VLRFAPNPSGP-LHIGHARAAILNHEYAR-----KYDGRLILRIEDTDPR-------------RVDPEAYDMIPADLEWL 158 (553)
T ss_dssp EEEECCCSSSS-CBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG-------------GCCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCC-ccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc-------------cccHHHHHHHHHHHHHc
Confidence 33448999998 99999999998666655 5677788888887542 12457889999999999
Q ss_pred CCCCCCCCceeCCChhhHHHHHHHHHHHHHCCceee
Q 008100 178 GFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (577)
Q Consensus 178 Gi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~ 213 (577)
|+ +|+..++ ..+|......+..+|.++|++|.
T Consensus 159 Gl--~wd~~~~--qSdr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 159 GV--EWDETVI--QSDRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp TC--CCSEEEE--GGGGHHHHHHHHHHHHHTTSEEE
T ss_pred CC--CCCCCcc--cccCHHHHHHHHHHHHHcCCcee
Confidence 99 5655443 45788888999999999999997
No 34
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=98.10 E-value=3.7e-06 Score=91.74 Aligned_cols=91 Identities=21% Similarity=0.388 Sum_probs=68.7
Q ss_pred CCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCC
Q 008100 101 MFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (577)
Q Consensus 101 ~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~ 180 (577)
=+|.|||. ||||||++.++...++| +|...++.-+|+... ...+.++.+.|.++|+.||+.
T Consensus 31 FaPSPtG~-LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD~-------------~R~~~e~~~~I~edL~wLGl~ 91 (553)
T 1qtq_A 31 FPPEPNGY-LHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTNP-------------VKEDIEYVESIKNDVEWLGFH 91 (553)
T ss_dssp ECCCTTSC-CBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCG-------------GGCCHHHHHHHHHHHHHTTCC
T ss_pred eCCCCCCC-ccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCCc-------------hhcCHHHHHHHHHHHHHcCCC
Confidence 38999998 99999999999887777 445566666666643 124678899999999999994
Q ss_pred CCCCCceeCCChhhHHHHHHHHHHHHHCCceee
Q 008100 181 YDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (577)
Q Consensus 181 ~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~ 213 (577)
.| +..++. .+|.........+|.++|++|.
T Consensus 92 wd-e~~~~q--Ser~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 92 WS-GNVRYS--SDYFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp CS-SSCEEG--GGGHHHHHHHHHHHHHTTSEEE
T ss_pred CC-CCCeeh--cccHHHHHHHHHHHHHCCCcee
Confidence 43 234333 3566666677789999999997
No 35
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=98.05 E-value=6.7e-06 Score=89.16 Aligned_cols=95 Identities=22% Similarity=0.257 Sum_probs=72.1
Q ss_pred EEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Q 008100 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (577)
Q Consensus 96 f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (577)
++++--.|.|||. |||||+|+.++.|++||. ..|.-++.+--+| +......+.+.|.++|+
T Consensus 13 vv~~RfaPsPTG~-LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD----------------~~r~~~~~~~~I~~~l~ 73 (481)
T 2o5r_A 13 MVRVRFAPSPTGF-LHVGGARTALFNFLFARK--EKGKFILRIEDTD----------------LERSEREYEEKLMESLR 73 (481)
T ss_dssp CCEEEECCCCCSC-CBHHHHHHHHHHHHHHHH--HTCEEEECBCCSS----------------CCSGGGHHHHHHHHHHH
T ss_pred EEEEEECCCCCCC-cCHHHHHHHHHHHHHHHH--cCCeEEEEEecCC----------------ccccHHHHHHHHHHHHH
Confidence 4444458999998 999999999999999998 6788777754333 22334566778899999
Q ss_pred HhCCCCCCCCc---------eeCCChhhHHHHHHHHHHHHHCCceee
Q 008100 176 SLGFSYDWNRE---------ISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (577)
Q Consensus 176 ~lGi~~Dw~~~---------~~T~d~~~~~~v~~~f~~L~~kGliy~ 213 (577)
.||+ +|+.. |+ ..++.+....+..+|.++|.+|.
T Consensus 74 wlGl--~~de~p~~gg~~g~y~--QS~r~~~y~~~a~~L~~~G~aY~ 116 (481)
T 2o5r_A 74 WLGL--LWDEGPDVGGDHGPYR--QSERVEIYREHAERLVKEGKAYY 116 (481)
T ss_dssp HHTC--CCSBBTTTBCTTCCCB--GGGGHHHHHHHHHHHHHTTSEEE
T ss_pred HcCC--CCCCCcccCCCCCcee--eeccHHHHHHHHHHHHHCCCeeE
Confidence 9999 56552 33 33556677889999999999984
No 36
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=97.99 E-value=1.1e-05 Score=89.48 Aligned_cols=92 Identities=21% Similarity=0.231 Sum_probs=70.8
Q ss_pred cCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCC
Q 008100 100 DMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGF 179 (577)
Q Consensus 100 ~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi 179 (577)
-=+|.|||. |||||+++.++.+.+||. ..|.-++.+--+| +......+.+.|.++|+.||+
T Consensus 133 RFaPsPTG~-LHiG~artAl~n~l~Ar~--~~G~~ilRieDtD----------------~~r~~~~~~~~I~~dL~wlGl 193 (592)
T 3al0_C 133 RFAPSPTGH-LHVGGARTALFNWMFARK--EGGKFILRIEDTD----------------TERSSREYEQQILESLRWCGL 193 (592)
T ss_dssp EECCCSSSC-CBHHHHHHHHHHHHHHHH--HTCEEEECBCCCC----------------SSSCCHHHHHHHHHHHHHTTC
T ss_pred EECCCCCCC-ccHHHHHHHHHHHHHHHh--cCCcEEEEecCcC----------------hhhccHHHHHHHHHHHHHcCC
Confidence 336999998 999999999999999986 4666665553333 233466788999999999999
Q ss_pred CCCCCCc---------eeCCChhhHHHHHHHHHHHHHCCceeee
Q 008100 180 SYDWNRE---------ISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (577)
Q Consensus 180 ~~Dw~~~---------~~T~d~~~~~~v~~~f~~L~~kGliy~~ 214 (577)
+||.. |+.+ ++......++.+|.++|++|.-
T Consensus 194 --~~D~~~~~gG~~gp~~qS--er~~~y~~~~~~L~~~G~aY~c 233 (592)
T 3al0_C 194 --DWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYYV 233 (592)
T ss_dssp --CCSBBTTTBCTTCCCBST--TCHHHHHHHHHHHHHTTTEEEE
T ss_pred --CCCCCCCcCCCCCCeeee--CCHHHHHHHHHHHHHcCCceEe
Confidence 56663 4443 4446778899999999999973
No 37
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=97.95 E-value=9.3e-06 Score=92.45 Aligned_cols=94 Identities=26% Similarity=0.341 Sum_probs=72.7
Q ss_pred EEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh
Q 008100 98 VLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSL 177 (577)
Q Consensus 98 i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 177 (577)
++==+|.|||. ||||||++.++...++| +|.+.++.-+|+...+ ....++.+.|.++|+.|
T Consensus 68 ~tRFaPSPtG~-LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~~-------------R~~~e~~~~IledL~wL 128 (851)
T 2hz7_A 68 VTRFPPDPSGY-AHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNPE-------------LARQEYVDSIADDLKWL 128 (851)
T ss_dssp EEEECCCSSSC-CBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCTT-------------TCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCC-ccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc-------------cccHHHHHHHHHHHHHc
Confidence 33348999998 99999999998777766 4566777777776532 23678899999999999
Q ss_pred CCCCCCC-CceeCCChhhHHHHHHHHHHHHHCCceeee
Q 008100 178 GFSYDWN-REISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (577)
Q Consensus 178 Gi~~Dw~-~~~~T~d~~~~~~v~~~f~~L~~kGliy~~ 214 (577)
|+ +|+ ..|+. .+|......+..+|.++|++|.-
T Consensus 129 Gl--~wde~~~~q--Ser~d~y~e~a~~LI~~G~AY~c 162 (851)
T 2hz7_A 129 GL--DWGEHFYYA--SDYFDRYYAYAEQLIRQGDAYVE 162 (851)
T ss_dssp TC--CCTTCEEEG--GGGHHHHHHHHHHHHHTTSEEEE
T ss_pred CC--CCCCCcccH--hhhHHHHHHHHHHHHHCCCcEee
Confidence 99 553 34333 47778888999999999999974
No 38
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=97.84 E-value=1.8e-05 Score=85.94 Aligned_cols=89 Identities=20% Similarity=0.263 Sum_probs=67.2
Q ss_pred CCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCC
Q 008100 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (577)
Q Consensus 102 pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~ 181 (577)
+|.|+|. |||||+++.++...++| ++.+.++.-+|+... ......+.+.|.++|+.||+
T Consensus 7 APSPtG~-lHiG~artal~n~l~Ar-----~~~G~filRieDtD~-------------~R~~~~~~~~i~~dL~wLGl-- 65 (492)
T 2cfo_A 7 APSPTGN-LHIGTARTAVFNWLYAR-----HRGGKFILRIEDTDR-------------ERSRPEYTENILEGLQWLGL-- 65 (492)
T ss_dssp CCCTTSC-CBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCSS-------------SSCCHHHHHHHHHHHHHTTC--
T ss_pred CCCCCCC-ccHHHHHHHHHHHHHHH-----hcCCeEEEEEeeCCc-------------cccchHHHHHHHHHHHHcCC--
Confidence 7999998 99999999988666555 445556666666532 12246788999999999999
Q ss_pred CCCC-ceeCCChhhHHHHHHHHHHHHHCCceee
Q 008100 182 DWNR-EISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (577)
Q Consensus 182 Dw~~-~~~T~d~~~~~~v~~~f~~L~~kGliy~ 213 (577)
+|+. .|+. .++......++.+|.++|++|.
T Consensus 66 ~wde~~~~Q--S~r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 66 TWDEGPYFQ--SDRLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp CCSEEEEEG--GGCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCCccc--cCCHHHHHHHHHHHHHCCCceE
Confidence 6766 4443 3556667788999999999996
No 39
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=97.83 E-value=2.2e-05 Score=84.86 Aligned_cols=90 Identities=20% Similarity=0.308 Sum_probs=67.9
Q ss_pred CCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCC
Q 008100 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (577)
Q Consensus 102 pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~ 181 (577)
+|.|||. |||||++++++..+++|. ..|.-++ -+|+... ......+.+.|.++|+.||+
T Consensus 31 APSPTG~-lHiG~~rtal~n~l~Ar~--~~G~fil---RieDtD~-------------~R~~~~~~~~i~~dl~wlGl-- 89 (490)
T 4g6z_A 31 APSPTGF-IHLGNIRSALYPWAFARK--MKGTFVL---RIEDTDV-------------ERSSQEAVDAILEGMAWLGL-- 89 (490)
T ss_dssp CCCCCSC-CBHHHHHHHHHHHHHHHH--TTCEEEE---EECCCCG-------------GGCCHHHHHHHHHHHHHTTC--
T ss_pred CCCCCCC-ccHHHHHHHHHHHHHHHh--cCCeEEE---EeCCCCc-------------ccccHHHHHHHHHHHHHcCC--
Confidence 7999998 999999999998888884 3454444 4444332 22346788999999999999
Q ss_pred CCCCc-eeCCChhhHHHHHHHHHHHHHCCceeee
Q 008100 182 DWNRE-ISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (577)
Q Consensus 182 Dw~~~-~~T~d~~~~~~v~~~f~~L~~kGliy~~ 214 (577)
+|+.. |+. .++......++.+|.++|++|.-
T Consensus 90 ~~d~~~~~q--S~r~~~y~~~~~~Li~~G~aY~C 121 (490)
T 4g6z_A 90 DYDEGPYYQ--MQRMDRYREVLAQMQEKGLVYPC 121 (490)
T ss_dssp CCSEEEEEG--GGCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCCccc--ccCHHHHHHHHHHHHHCCCEEeC
Confidence 66663 333 35667778899999999999953
No 40
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=97.57 E-value=0.00012 Score=79.28 Aligned_cols=92 Identities=21% Similarity=0.233 Sum_probs=68.8
Q ss_pred cCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCC
Q 008100 100 DMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGF 179 (577)
Q Consensus 100 ~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi 179 (577)
==+|.|||. |||||+++.++.-.++|- ..|.-++.+--+|. ......+.+.|.++|+.||+
T Consensus 29 RFAPsPtG~-LHiG~~rtal~n~l~Ar~--~~G~filRieDtD~----------------~R~~~~~~~~I~~dL~wlGl 89 (488)
T 3afh_A 29 RFAPSPTGH-LHVGGARTALFNWMFARK--EGGKFILRIEDTDT----------------ERSSREYEQQILESLRWCGL 89 (488)
T ss_dssp EECCCCSSS-CBHHHHHHHHHHHHHHHH--HTCEEEECBCCCCT----------------TTCCHHHHHHHHHHHHHTTC
T ss_pred EECCCCCCC-ccHHHHHHHHHHHHHHHH--cCCEEEEEEeeCCc----------------ccccHHHHHHHHHHHHHcCC
Confidence 338999998 999999999988888874 35555554444432 22356778899999999999
Q ss_pred CCCCCCc---------eeCCChhhHHHHHHHHHHHHHCCceeee
Q 008100 180 SYDWNRE---------ISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (577)
Q Consensus 180 ~~Dw~~~---------~~T~d~~~~~~v~~~f~~L~~kGliy~~ 214 (577)
|||.. |+.+ ++.+....++.+|.++|++|.-
T Consensus 90 --~wDe~~~~gG~~gp~~QS--er~~~y~~~~~~L~~~G~aY~c 129 (488)
T 3afh_A 90 --DWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYYV 129 (488)
T ss_dssp --CCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHTTSEEEE
T ss_pred --CCCcCCCCCCCCCCeeee--CCHHHHHHHHHHHHHcCCeEec
Confidence 56663 4433 4556778899999999999974
No 41
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=97.53 E-value=8.6e-05 Score=80.10 Aligned_cols=92 Identities=25% Similarity=0.226 Sum_probs=66.8
Q ss_pred CCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCC
Q 008100 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (577)
Q Consensus 102 pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~ 181 (577)
+|.|||. |||||+++.++.-.++|- ..|.-++. +|+... ......+.+.|.++|+.||+
T Consensus 7 aPsPtG~-LHiG~~rtal~n~l~Ar~--~~G~filR---ieDtD~-------------~R~~~~~~~~I~~dl~wlGl-- 65 (468)
T 1j09_A 7 APSPTGD-PHVGTAYIALFNYAWARR--NGGRFIVR---IEDTDR-------------ARYVPGAEERILAALKWLGL-- 65 (468)
T ss_dssp CCCCSSS-CBHHHHHHHHHHHHHHHH--TTCEEEEC---BCCCCT-------------TSCCTTHHHHHHHHHHHTTC--
T ss_pred CCCCCCC-ccHHHHHHHHHHHHHHHH--cCCEEEEE---eCcCCC-------------cccChHHHHHHHHHHHHcCC--
Confidence 7999998 999999999999888883 35544444 444321 12245678899999999999
Q ss_pred CCCCce-------eCCChhhHHHHHHHHHHHHHCCceeee
Q 008100 182 DWNREI-------STIEPAYYKWTQWIFLQLLKRGLAYQA 214 (577)
Q Consensus 182 Dw~~~~-------~T~d~~~~~~v~~~f~~L~~kGliy~~ 214 (577)
||+... -....++.+.-..+..+|.++|++|.-
T Consensus 66 ~wd~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~c 105 (468)
T 1j09_A 66 SYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRA 105 (468)
T ss_dssp CCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEEc
Confidence 576641 022345666677889999999999964
No 42
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=97.45 E-value=0.00022 Score=77.37 Aligned_cols=89 Identities=24% Similarity=0.275 Sum_probs=68.5
Q ss_pred CCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCC
Q 008100 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (577)
Q Consensus 102 pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~ 181 (577)
+|-|||. |||||+++.++.-.+||- ..|.-++.+--+| +......+.+.|.++|+-||+
T Consensus 12 APsPTG~-LHiG~~rtAL~n~l~Ar~--~gG~fiLRieDtD----------------~~R~~~~~~~~I~~~L~wlGl-- 70 (498)
T 2ja2_A 12 CPSPTGT-PHVGLVRTALFNWAYARH--TGGTFVFRIEDTD----------------AQRDSEESYLALLDALRWLGL-- 70 (498)
T ss_dssp CCCSSSS-CBHHHHHHHHHHHHHHHH--HTCEEEECBCCCC----------------TTTCCHHHHHHHHHHHHHHTC--
T ss_pred CcCCCCC-ccHHHHHHHHHHHHHHHH--cCCEEEEEECcCC----------------CcccChHHHHHHHHHHHHcCC--
Confidence 7999998 999999999999999984 4676555544443 223456778899999999999
Q ss_pred CCCC---------ceeCCChhhHHHHHHHHHHHHHCCceee
Q 008100 182 DWNR---------EISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (577)
Q Consensus 182 Dw~~---------~~~T~d~~~~~~v~~~f~~L~~kGliy~ 213 (577)
|||. .|+. .++.+.-.....+|.++|++|.
T Consensus 71 ~wDegp~~gG~~~~~~Q--S~r~~~y~~~~~~L~~~g~aY~ 109 (498)
T 2ja2_A 71 DWDEGPEVGGPYGPYRQ--SQRAEIYRDVLARLLAAGEAYH 109 (498)
T ss_dssp CCSBBTTTBCTTCCCBG--GGCHHHHHHHHHHHHHTTSEEE
T ss_pred CcCCCcCcCCCCCCeee--ecCHHHHHHHHHHHHHcCCeEE
Confidence 6766 3443 3555667788999999999996
No 43
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=97.41 E-value=0.00022 Score=77.98 Aligned_cols=92 Identities=20% Similarity=0.196 Sum_probs=65.5
Q ss_pred CCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCC
Q 008100 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (577)
Q Consensus 102 pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~ 181 (577)
+|-|||. ||||||++.++.-.+||- ..|.-++.+--+|. ......+.+.|.++|+-||+
T Consensus 30 APsPtG~-LHiG~artAl~n~~~Ar~--~~G~fiLRieDtD~----------------~R~~~~~~~~I~~~L~wlGl-- 88 (512)
T 4gri_A 30 APSPTGL-QHIGGIRTALFNYFFAKS--CGGKFLLRIEDTDQ----------------SRYSPEAENDLYSSLKWLGI-- 88 (512)
T ss_dssp CCCSSSC-CBHHHHHHHHHHHHHHHH--TTCEEEECBCCCCT----------------TSCCHHHHHHHHHHHHHHTC--
T ss_pred CcCCCCc-ccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCC----------------CcCCHHHHHHHHHHHHHcCC--
Confidence 8999998 999999999999999874 46655554443332 22345678889999999999
Q ss_pred CCCCce------eC-CChhhHHHHHHHHHHHHHCCceeee
Q 008100 182 DWNREI------ST-IEPAYYKWTQWIFLQLLKRGLAYQA 214 (577)
Q Consensus 182 Dw~~~~------~T-~d~~~~~~v~~~f~~L~~kGliy~~ 214 (577)
+||..- .+ ...++.+.-.....+|.++|++|.-
T Consensus 89 ~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C 128 (512)
T 4gri_A 89 SFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYC 128 (512)
T ss_dssp CCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCcccc
Confidence 555421 11 1233445556788999999999963
No 44
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=97.24 E-value=5.4e-05 Score=86.29 Aligned_cols=28 Identities=29% Similarity=0.531 Sum_probs=22.4
Q ss_pred ccCcccccCcCccccccceEEECCCCee
Q 008100 489 KLRDWLFARQRYWGEPIPVVFLDGTGET 516 (577)
Q Consensus 489 ~~~DWcISRQR~WG~PIPv~~~~~~g~~ 516 (577)
+++||||||||+||+|||++++...++.
T Consensus 223 gl~dw~ISR~~~WG~piP~~~~g~~~~~ 250 (722)
T 1rqg_A 223 GLEERAITRDLNWGIPVPLDEEDMKGKV 250 (722)
T ss_dssp CCCCEECEECCSSSCBCSCCCSSSTTCE
T ss_pred CCcccceeccccCccccCccccCCCCCE
Confidence 4789999999999999999764444443
No 45
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=97.10 E-value=5.1e-05 Score=84.16 Aligned_cols=18 Identities=33% Similarity=0.630 Sum_probs=17.0
Q ss_pred ccCcccccC----cCccccccc
Q 008100 489 KLRDWLFAR----QRYWGEPIP 506 (577)
Q Consensus 489 ~~~DWcISR----QR~WG~PIP 506 (577)
+++|||||| |++||+|||
T Consensus 229 gl~D~~ISR~~~~~~~WGipiP 250 (564)
T 3kfl_A 229 GLFDLSISRKRESVMNWSIPVP 250 (564)
T ss_dssp CCCCEECEEEGGGGTTCSCEET
T ss_pred CCCCccccCcCCCCCCCCeecC
Confidence 579999999 899999999
No 46
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=96.41 E-value=0.00062 Score=74.68 Aligned_cols=18 Identities=39% Similarity=1.043 Sum_probs=16.9
Q ss_pred ccCcccccCcCc-cccccc
Q 008100 489 KLRDWLFARQRY-WGEPIP 506 (577)
Q Consensus 489 ~~~DWcISRQR~-WG~PIP 506 (577)
+++||||||||+ ||+|||
T Consensus 211 ~l~Dw~iSRqr~~WG~~iP 229 (524)
T 2x1l_A 211 GLKDLSISRTTFDWGVPVP 229 (524)
T ss_dssp CCCCEECEESSCCSSCEET
T ss_pred CCcccceECCCCCcCccCC
Confidence 589999999996 999999
No 47
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=96.26 E-value=0.00074 Score=74.34 Aligned_cols=20 Identities=35% Similarity=0.616 Sum_probs=17.7
Q ss_pred ccCcccccCcCc----cccccceE
Q 008100 489 KLRDWLFARQRY----WGEPIPVV 508 (577)
Q Consensus 489 ~~~DWcISRQR~----WG~PIPv~ 508 (577)
.++||||||||+ ||+|||..
T Consensus 212 ~l~Dw~ISRq~~~~~~WGipiP~~ 235 (542)
T 3u1f_A 212 GLPDLSVSRARATLHNWAIPVPGN 235 (542)
T ss_dssp CCCCEECEEEGGGGTTCSCEETTE
T ss_pred cccccCccccccCcCCCCCccCCC
Confidence 379999999999 99999953
No 48
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=95.91 E-value=0.0016 Score=71.51 Aligned_cols=18 Identities=39% Similarity=0.883 Sum_probs=15.7
Q ss_pred ccCcccccCcC-ccccccc
Q 008100 489 KLRDWLFARQR-YWGEPIP 506 (577)
Q Consensus 489 ~~~DWcISRQR-~WG~PIP 506 (577)
+++|||||||| +||+|||
T Consensus 223 ~l~D~~ISR~~~~WGipiP 241 (536)
T 4dlp_A 223 GLKDLSISRTTFDWGIPVP 241 (536)
T ss_dssp CCCCEECEEC--CCSCBCT
T ss_pred CCCccCCccCCCcCCeeCC
Confidence 57999999997 5999999
No 49
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=95.29 E-value=0.0035 Score=68.14 Aligned_cols=19 Identities=37% Similarity=0.793 Sum_probs=16.5
Q ss_pred ccCcccccC--cC-ccccccce
Q 008100 489 KLRDWLFAR--QR-YWGEPIPV 507 (577)
Q Consensus 489 ~~~DWcISR--QR-~WG~PIPv 507 (577)
+++|||||| || .||+|||.
T Consensus 197 ~l~Dw~iSRp~~~~~WG~piP~ 218 (500)
T 2d5b_A 197 PIGDLSISRPKSRVPWGIPLPW 218 (500)
T ss_dssp CCCCEECEEETTTCCSSCEETT
T ss_pred CCCCeecccccccccCccccCC
Confidence 468999999 88 59999993
No 50
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=95.23 E-value=0.0041 Score=68.74 Aligned_cols=18 Identities=39% Similarity=0.885 Sum_probs=17.1
Q ss_pred ccCcccccCcC-ccccccc
Q 008100 489 KLRDWLFARQR-YWGEPIP 506 (577)
Q Consensus 489 ~~~DWcISRQR-~WG~PIP 506 (577)
+++|||||||+ |||+|||
T Consensus 238 ~l~D~~IsR~~~~WG~~iP 256 (560)
T 3h99_A 238 GLQQWDISRDAPYFGFEIP 256 (560)
T ss_dssp CCCCEECEEESSCSSCBCT
T ss_pred CCCCCCccccCCcCCeeCC
Confidence 58999999999 9999999
No 51
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=94.79 E-value=0.0056 Score=66.58 Aligned_cols=19 Identities=42% Similarity=0.933 Sum_probs=16.6
Q ss_pred ccCcccccC--cCc-cccccce
Q 008100 489 KLRDWLFAR--QRY-WGEPIPV 507 (577)
Q Consensus 489 ~~~DWcISR--QR~-WG~PIPv 507 (577)
+++|||||| ||+ ||+|||.
T Consensus 200 ~~~Dw~isR~~~~~~WG~~iP~ 221 (497)
T 2csx_A 200 GLKDLSVTRPRSRVKWGIPVPF 221 (497)
T ss_dssp CCCCEECEEETTTCCSSEEETT
T ss_pred CCccccccccCCCCCCceecCC
Confidence 478999999 885 9999994
No 52
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=89.67 E-value=0.1 Score=60.20 Aligned_cols=77 Identities=22% Similarity=0.452 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCCC-C
Q 008100 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW-P 274 (577)
Q Consensus 196 ~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~~-p 274 (577)
++-..+...|.++|++.......+ .++.|++||.+++.+.++||||+++++++++++.++...| |
T Consensus 361 ~a~~~i~~~L~~~g~~~~~~~~~h--------------~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~~~~~~P 426 (821)
T 1ile_A 361 EANRAILRDLRGRGLLFKEESYLH--------------SYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVP 426 (821)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEE--------------EEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEESS
T ss_pred HHHHHHHHHHHhCCCeeeeecccc--------------cCCEecCCCCEEEEEecchhhhchHHHHHHHHHHhcCeEEEC
Confidence 455677888999998766543221 2456778888899999999999999999999998887664 7
Q ss_pred HHHH-HHHHHhhh
Q 008100 275 ESVK-EMQRNWIG 286 (577)
Q Consensus 275 ~~~~-~~~~~~i~ 286 (577)
+..+ +...+||.
T Consensus 427 ~~~~~~~~~~~l~ 439 (821)
T 1ile_A 427 PHIKEGRYGEWLK 439 (821)
T ss_dssp GGGTTTTTHHHHH
T ss_pred chhhHhHHHHHHh
Confidence 7663 35566773
No 53
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=88.93 E-value=0.11 Score=59.94 Aligned_cols=51 Identities=20% Similarity=0.370 Sum_probs=42.6
Q ss_pred CccccCCcCeEEE-ecccchhhHhh--hhHHHhhccCCCC-CCHHHHHHHHHhhh
Q 008100 236 GVSERGGHPVIRK-PMRQWMLKITE--YADRLLDDLDDLD-WPESVKEMQRNWIG 286 (577)
Q Consensus 236 ~~~~~~~~~~~~~-~~~~~~~~l~~--y~~~l~~~l~~~~-~p~~~~~~~~~~i~ 286 (577)
+.|.+||.+++.+ .++||||++++ +++.+++.+++.. +|+..++...+|+.
T Consensus 447 ~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~~l~~~~~~~~~P~~~~~~~~~~l~ 501 (810)
T 1wkb_A 447 NVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIID 501 (810)
T ss_dssp CCBCTTSCBCEEEEEEEEEEECTTCHHHHHHHHHHHHTSEEESGGGHHHHHHHHH
T ss_pred CcCCCCCCEEEEEecCCceeEecChHHHHHHHHhhhcccEEECcchhchHHHHhh
Confidence 5567899887777 79999999985 9999999887764 79988888889984
No 54
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=87.81 E-value=0.3 Score=49.88 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=40.7
Q ss_pred CCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCCC
Q 008100 105 PSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYD 182 (577)
Q Consensus 105 png~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~D 182 (577)
|+|. |||||..+.+.. +.++++ |+++.+..| |-|++- +....+...++...+..++.++|+..+
T Consensus 12 PTg~-lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia-D~ha~~--------~~~~~~~l~~~~~~~~~~~lA~Gldp~ 75 (322)
T 3tzl_A 12 PSGD-LHIGNYFGAIKQ--MVDAQE--KSQMFMFIA-NYHAMT--------SSQDGEKLKQNSLKAAAAFLSLGIDPQ 75 (322)
T ss_dssp CSSC-CBHHHHHHTHHH--HHHTTT--TSCCEEEEC-HHHHTT--------TCCCHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred CCcc-ccHHHHHHHHHH--HHHHhc--CCCEEEEEe-cCeeec--------CCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 4676 999999876543 455555 999876665 444431 111223345666677788888998544
No 55
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=87.63 E-value=1.5 Score=45.93 Aligned_cols=89 Identities=16% Similarity=0.100 Sum_probs=52.2
Q ss_pred CCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHH
Q 008100 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (577)
Q Consensus 93 ~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (577)
+++++++.|.=+..|. |||||..... .+.++++.-|..|.+. .|.+ .+.........+.+.++...+..
T Consensus 72 g~~~~vy~G~~PTa~~-lHlGh~v~~~---~~~~lQ~~~~~~v~i~-----I~D~--~~~~~r~~~~~e~i~~~~~~~~~ 140 (393)
T 3hv0_A 72 GELFYLYTGRGPSSES-LHVGHLVPFL---FTKYLQDTFKVPLVIQ-----LTDD--EKFIFKSNLTLEETHNYAYENMK 140 (393)
T ss_dssp TCCCEEEEEECCSSSS-CBSTTHHHHH---HHHHHHHHHCCCEEEE-----ECHH--HHHHHCTTCCHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCCCCCC-ccHHHHHHHH---HHHHHHHhcCCCeEee-----ccCh--HHHhhccCCCHHHHHHHHHHHHH
Confidence 3456777776544465 9999966544 3555666657776553 3433 12233322344556777778888
Q ss_pred HHHHhCCCCCCCCceeCCChhh
Q 008100 173 QLKSLGFSYDWNREISTIEPAY 194 (577)
Q Consensus 173 ~l~~lGi~~Dw~~~~~T~d~~~ 194 (577)
++.++|+..+ +...-.+.++
T Consensus 141 ~~lA~GlDp~--kt~i~~ns~~ 160 (393)
T 3hv0_A 141 DIIACGFDPE--LTFIFTNLEY 160 (393)
T ss_dssp HHHTTCCCTT--TEEEEEHHHH
T ss_pred HHHHcCCCCc--ceEEEECCHH
Confidence 9999998554 5433333333
No 56
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=86.13 E-value=1.5 Score=46.66 Aligned_cols=120 Identities=14% Similarity=0.091 Sum_probs=70.0
Q ss_pred HHhhhhhhcccCCCchhhhHHHHHH-----------HHHCCCccCCCCC------CCCCCcEEEEcCCCCCCCCCCCcch
Q 008100 52 EQKQKQQVVKRAYPFHEIEPKWQSY-----------WENNRTFRTPDEI------DTSKPKFYVLDMFPYPSGAGLHVGH 114 (577)
Q Consensus 52 ~~~~~~~~~~~~y~~~~iE~~~~~~-----------W~~~~~f~~~~~~------~~~~~~f~i~~~pPypng~~LHiGH 114 (577)
+.+-+|..+-..|--..|+....+. +.+.++|....+. -.++++++++.|.=+..|. |||||
T Consensus 31 ~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~l~RG~i~~~~dl~~ll~~l~~g~p~~vytG~dPTags-LHLGH 109 (451)
T 3foc_A 31 AAAVAYEDIITRFGAAPITDDLLKRFETVTGTKAHPMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGA-LHLGH 109 (451)
T ss_dssp HHHHHHHHHHHTTTCBCCCHHHHHHHHHHHTCCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEECCCSSC-CBHHH
T ss_pred cccCcHHHHHHHhCCCcCCHHHHHHHHHHhCCChHHHHhCCCccccccHHHHHHHHhcCCCeEEEecCCCCCCC-ccHHH
Confidence 3455666677777766666655443 3455655322111 1233567888886655576 99999
Q ss_pred hhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCCC
Q 008100 115 PLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYD 182 (577)
Q Consensus 115 a~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~D 182 (577)
..... .+.+++..-|..+.+. -|.+ + +.........+.+.++...+..++.++|+..+
T Consensus 110 ~v~~~---~l~~lQ~~~g~~v~I~-----IgD~-~-a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpe 167 (451)
T 3foc_A 110 LLPFI---FTKYLQDAFKCYVVIQ-----ITDD-E-KFLRNRSLSYAEVDSYTRENIKDIIACGFDPD 167 (451)
T ss_dssp HHHHH---HHHHHHHHHTCEEEEE-----ECHH-H-HHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred HHHHH---HHHHHHHccCceEEEE-----eeCc-H-HhhcccCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 76543 3444666657777664 3444 1 22222122345567777788889999998544
No 57
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=85.79 E-value=0.48 Score=54.77 Aligned_cols=77 Identities=21% Similarity=0.336 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcCeEEEecccchhhHhhhhHHHhhccC--CC-C
Q 008100 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLD--DL-D 272 (577)
Q Consensus 196 ~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~--~~-~ 272 (577)
+.-..+.+.|.++|++.+.... +...+.|++||.+++.+..+|||++++.+++.+.+.++ .. .
T Consensus 316 ~a~~~iv~~L~~~g~l~~~~~~--------------~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~ 381 (862)
T 1gax_A 316 EARRKAVELFREAGHLVKEEDY--------------TIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAF 381 (862)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEE--------------EECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHhCCCeeeeccc--------------cccCCeecCCCCeEEEEecceEEEEhHHHHHHHHHHHHcCCceE
Confidence 4456788889999987654322 12245677888888899999999999999999999884 33 3
Q ss_pred CCHHHHHHHHHhhh
Q 008100 273 WPESVKEMQRNWIG 286 (577)
Q Consensus 273 ~p~~~~~~~~~~i~ 286 (577)
+|+..++...+||.
T Consensus 382 ~P~~~~~~~~~wl~ 395 (862)
T 1gax_A 382 VPERWKKVNMDWLE 395 (862)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHh
Confidence 89999999999984
No 58
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=85.10 E-value=1.9 Score=45.11 Aligned_cols=78 Identities=17% Similarity=0.153 Sum_probs=42.0
Q ss_pred CcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHH----HHHH
Q 008100 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLR----NINR 169 (577)
Q Consensus 94 ~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~----~~~~ 169 (577)
+++.++.|.= |+|. |||||.++.+. +.++++ .|+++.+..| |.|++-. .. ..+.+.++. +...
T Consensus 38 ~p~~vy~G~~-PTG~-LHlG~~~~al~---~~~~~q-~g~~~ii~I~-D~ha~t~-----~~-~~~~e~~~~~~~~~~~~ 104 (394)
T 2dlc_X 38 RHLKLYWGTA-PTGR-PHCGYFVPMTK---LADFLK-AGCEVTVLLA-DLHAFLD-----NM-KAPLEVVNYRAKYYELT 104 (394)
T ss_dssp SCCEEEEEEC-CCSC-CBGGGHHHHHH---HHHHHH-TTCEEEEEEC-HHHHHHT-----TT-SSCTTHHHHHHHHHHHH
T ss_pred CCeEEEEEeC-CCCC-ccHHHHHHHHH---HHHHHH-cCCcEEEEEc-CCccccC-----CC-CCcHHHHHHHHHHHHHH
Confidence 4455666653 3786 99999877543 444555 7888765554 2222100 00 112222222 3344
Q ss_pred HHHHHHHhCCCCCCCCc
Q 008100 170 FRTQLKSLGFSYDWNRE 186 (577)
Q Consensus 170 ~~~~l~~lGi~~Dw~~~ 186 (577)
+...|..+|+ ||++.
T Consensus 105 i~~~l~a~Gl--dp~k~ 119 (394)
T 2dlc_X 105 IKAILRSINV--PIEKL 119 (394)
T ss_dssp HHHHHHHTTC--CCTTC
T ss_pred HHHHHHHcCC--ChhHc
Confidence 5567788898 66564
No 59
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=84.85 E-value=1.9 Score=43.78 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=43.6
Q ss_pred EEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Q 008100 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (577)
Q Consensus 96 f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (577)
+.++.|. -|+|. |||||+ ..+. .+.+++ ..|+++.+..| |.|++- .. ..+ .+...++...+..++.
T Consensus 33 ~~vy~G~-~PTg~-lHlG~l-~~l~--~~~~lq-~~g~~~~~~i~-D~~a~~-----~d-~~~-~~~i~~~~~~~~~~~~ 98 (323)
T 2cyb_A 33 PRAYVGY-EPSGE-IHLGHM-MTVQ--KLMDLQ-EAGFEIIVLLA-DIHAYL-----NE-KGT-FEEIAEVADYNKKVFI 98 (323)
T ss_dssp CEEEEEE-CCCSC-CBHHHH-HHHH--HHHHHH-HTTCEEEEEEC-HHHHHH-----TT-CCC-HHHHHHHHHHHHHHHH
T ss_pred CEEEECc-CCCCc-chHHHH-HHHH--HHHHHH-HCCCcEEEEEC-CceeEc-----CC-CCC-HHHHHHHHHHHHHHHH
Confidence 4555565 46787 999996 3322 344444 35888765554 222210 00 112 2345677788888999
Q ss_pred HhCCCCCCCCc
Q 008100 176 SLGFSYDWNRE 186 (577)
Q Consensus 176 ~lGi~~Dw~~~ 186 (577)
++|+ ||++.
T Consensus 99 a~Gl--dp~k~ 107 (323)
T 2cyb_A 99 ALGL--DESRA 107 (323)
T ss_dssp HTTC--CTTTC
T ss_pred HhCC--Cccce
Confidence 9998 66564
No 60
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=84.03 E-value=0.36 Score=56.23 Aligned_cols=53 Identities=21% Similarity=0.255 Sum_probs=47.4
Q ss_pred cCccccCCcCeEEEecccchhhHhhhhHHHhhccCCCC-CCHHHHHHHHHhhhc
Q 008100 235 DGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-WPESVKEMQRNWIGR 287 (577)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~l~~y~~~l~~~l~~~~-~p~~~~~~~~~~i~~ 287 (577)
++.|++|+.+++.+.++|||+++.++++++++.++... .|+..++...+||..
T Consensus 394 ~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~~~~~~P~~~~~r~~~~l~~ 447 (917)
T 1ffy_A 394 YPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRD 447 (917)
T ss_dssp EEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTSEESSHHHHHHHHHHHHH
T ss_pred CCEecCCCCEEEEEeccceEeeHHHHHHHHHHHHhcCcccCHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999998775 699999999999853
No 61
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=82.81 E-value=2.6 Score=43.96 Aligned_cols=89 Identities=12% Similarity=0.173 Sum_probs=52.0
Q ss_pred CCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHH
Q 008100 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (577)
Q Consensus 93 ~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (577)
++++.++.|. -|+|. |||||..+. .++.+++..-|..+.+..|-++ +..... ...+.+.++...+..
T Consensus 80 ~~~~~vysG~-~PTG~-lHLGh~v~~---~~~~~lQ~~~g~~v~i~I~D~~-------a~~~r~-~~~e~i~~~~~~~~~ 146 (386)
T 3hzr_A 80 KKPTFIFIQK-YPQKE-VALEEYITL---EFARYLQDAFNIQVIIQILDDI-------KVLNRE-ATINEASKMSNDLMK 146 (386)
T ss_dssp TCCEEEEEEE-CCCSS-CBGGGHHHH---HHHHHHHHHHCCEEEEEECHHH-------HHHTTS-CCHHHHHHHHHHHHH
T ss_pred CCCeEEEecc-CCCCC-ccHHHHHHH---HHHHHHHHhcCCeEEEEeCchH-------HhhcCC-CCHHHHHHHHHHHHH
Confidence 3457777775 46787 999997664 3344455656877766633221 111122 233456666777888
Q ss_pred HHHHhCCCCCCCCceeCCChhhHH
Q 008100 173 QLKSLGFSYDWNREISTIEPAYYK 196 (577)
Q Consensus 173 ~l~~lGi~~Dw~~~~~T~d~~~~~ 196 (577)
++.++|+..+ +...-.+.++.+
T Consensus 147 ~~lA~GlDp~--kt~i~~qS~~~~ 168 (386)
T 3hzr_A 147 YILAFGFNED--KTFIYTDYQYFG 168 (386)
T ss_dssp HHHHTCCCGG--GEEEEEHHHHHH
T ss_pred HHHHcCCCCc--ceEEEeccHHHH
Confidence 8999999655 443333444433
No 62
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=81.31 E-value=0.93 Score=46.32 Aligned_cols=66 Identities=21% Similarity=0.345 Sum_probs=39.7
Q ss_pred CCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCCCCC
Q 008100 105 PSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWN 184 (577)
Q Consensus 105 png~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~Dw~ 184 (577)
|+|. |||||..+.+.. +.+++ .|+++.+..| |-|++- +....+...++...+..++.++|+ |.+
T Consensus 10 PTG~-lHlGn~vg~l~~--~~~lQ--~g~~~~~~Ia-D~ha~~--------~~~~~e~i~~~~~~~~~~~la~Gl--dp~ 73 (328)
T 1i6k_A 10 PSGV-ITIGNYIGALRQ--FVELQ--HEYNCYFCIV-DQHAIT--------VWQDPHELRQNIRRLAALYLAVGI--DPT 73 (328)
T ss_dssp CCSC-CBHHHHHHTHHH--HHHHT--TTSEEEEEEC-HHHHTT--------SCCCHHHHHHHHHHHHHHHHHTTC--CTT
T ss_pred CCCc-ccHHHHHHHHHH--HHHHH--cCCcEEEEEe-Cceeec--------CCCCHHHHHHHHHHHHHHHHHhCC--Chh
Confidence 3476 999999887622 22333 3888865555 333321 101223456667788899999998 444
Q ss_pred Cc
Q 008100 185 RE 186 (577)
Q Consensus 185 ~~ 186 (577)
+.
T Consensus 74 k~ 75 (328)
T 1i6k_A 74 QA 75 (328)
T ss_dssp TE
T ss_pred hc
Confidence 44
No 63
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=80.60 E-value=1.6 Score=45.30 Aligned_cols=75 Identities=15% Similarity=0.093 Sum_probs=43.0
Q ss_pred EEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Q 008100 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (577)
Q Consensus 96 f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (577)
+.++.|. -|+|. ||||| +..+. .+.+++ ..|+++.+..| |.|++-. ...|.+ .+...++...+..++.
T Consensus 36 ~~iy~G~-~PTg~-lHlG~-l~~l~--~~~~lQ-~~G~~~~~~ia-D~~a~~~----~ps~~~-~e~i~~~~~~~~~~~l 103 (364)
T 2cya_A 36 IKGYIGY-EPSGV-AHIGW-LVWMY--KVKDLV-EAGVDFSVLEA-TWHAYIN----DKLGGD-MDLIRAAARIVRRVME 103 (364)
T ss_dssp CEEEEEE-CCCSS-CBTHH-HHHHH--HHHHHH-HTTCEEEEEEC-HHHHHHT----TGGGGC-HHHHHHHHHHHHHHHH
T ss_pred CEEEecc-CCCCC-ccHhH-HHHHH--HHHHHH-HCCCCEEEEEe-CcchhhC----CCCCCC-HHHHHHHHHHHHHHHH
Confidence 4555554 34687 99999 55432 234444 46998876666 3333210 001112 2345566677888999
Q ss_pred HhCCCCC
Q 008100 176 SLGFSYD 182 (577)
Q Consensus 176 ~lGi~~D 182 (577)
.+|+..+
T Consensus 104 a~G~dp~ 110 (364)
T 2cya_A 104 AAGVPVE 110 (364)
T ss_dssp HTTCCGG
T ss_pred HhCCCcc
Confidence 9998444
No 64
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=80.45 E-value=2.9 Score=43.69 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=46.5
Q ss_pred CcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHH
Q 008100 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQ 173 (577)
Q Consensus 94 ~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (577)
++++++.|.= |+|. |||||..+.+. ..+++...|.++.+..| |.|++-. .... ..+.+.++...+..+
T Consensus 72 ~p~~i~sG~~-PTG~-lHLGh~v~~~~---~~~lQ~~~g~~~~i~Ia-D~ha~~~-----~~~~-~~e~i~~~~~~~~~~ 139 (392)
T 3jxe_A 72 RGFFLYTGRG-PSGP-MHIGHIIPFFA---TKWLQEKFGVNLYIQIT-DDEKFLF-----KENL-TFDDTKRWAYDNILD 139 (392)
T ss_dssp CCCEEEEEEC-CSSC-CBHHHHHHHHH---HHHHHHHHCCEEEEEEC-HHHHHHH-----CSSC-CHHHHHHHHHHHHHH
T ss_pred CCeEEEeccC-CCCc-hhHHHHHHHHH---HHHHHHhcCCceEEEec-chHHhhc-----CCCC-CHHHHHHHHHHHHHH
Confidence 4466666654 3487 99999887642 22244446988877766 4443210 0012 234456666777888
Q ss_pred HHHhCCCCC
Q 008100 174 LKSLGFSYD 182 (577)
Q Consensus 174 l~~lGi~~D 182 (577)
+.++|+..+
T Consensus 140 ~lA~GlDp~ 148 (392)
T 3jxe_A 140 IIAVGFDPD 148 (392)
T ss_dssp HHTTCCCTT
T ss_pred HHHhCcCcc
Confidence 889998655
No 65
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=79.11 E-value=2.2 Score=45.23 Aligned_cols=79 Identities=11% Similarity=0.137 Sum_probs=47.2
Q ss_pred CCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHH
Q 008100 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (577)
Q Consensus 93 ~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (577)
+++++++.|.=+..|. |||||....+. +.+++...|+++.+..| |.|+.- .....+ .+.+.+++..+..
T Consensus 100 g~~~~vy~G~dPTag~-LHLGh~v~~~~---l~~lQ~~~g~~~i~lI~-D~ta~l-----~~~~~t-~e~i~~~~~~~~~ 168 (432)
T 2ip1_A 100 GKPFFLYTGRGPSSDS-MHLGHMIPFVF---TKWLQEVFDVPLVIELT-DDEKFL-----FKHKLT-INDVKNFARENAK 168 (432)
T ss_dssp TCCCEEEEEECCCSSC-CBGGGHHHHHH---HHHHHHHHTCCEEEEEC-HHHHHH-----HCTTCC-HHHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCC-ccHHHHHHHHH---HHHHHHHcCCeEEEEEe-ccccee-----CCCCCC-HHHHHHHHHHHHH
Confidence 3456777776555576 99999986542 33555557988777776 333310 000122 2345666666677
Q ss_pred HHHHhCCCCC
Q 008100 173 QLKSLGFSYD 182 (577)
Q Consensus 173 ~l~~lGi~~D 182 (577)
++.++|+..+
T Consensus 169 ~~lA~GlDp~ 178 (432)
T 2ip1_A 169 DIIAVGFDPK 178 (432)
T ss_dssp HHHTTTCCGG
T ss_pred HHHHhCCCCC
Confidence 8888887544
No 66
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=78.21 E-value=2.3 Score=45.67 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=46.7
Q ss_pred CCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHH
Q 008100 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (577)
Q Consensus 93 ~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (577)
+++++++.|.=+..|. |||||....+. +.+++...|.++.+..|=.+ +.=- . ..+ .+.+.++...+..
T Consensus 153 ~~~~~vy~G~dPTag~-LHLGh~v~~~~---~~~lQ~~~g~~~iilI~D~~-a~ig-----d-~lt-~e~i~~n~~~~~~ 220 (477)
T 1r6t_A 153 KKPFYLYTGRGPSSEA-MHVGHLIPFIF---TKWLQDVFNVPLVIQMTDDE-KYLW-----K-DLT-LDQAYGDAVENAK 220 (477)
T ss_dssp TCCEEEEEEECCCTTC-CBGGGHHHHHH---HHHHHHHHTCCEEEEECHHH-HHHH-----S-SCC-HHHHHHHHHHHHH
T ss_pred CCCcEEEEcccCCCCC-ccHHHHHHHHH---HHHHHHHhCCcEEEEEecce-eeec-----C-CCC-HHHHHHHHHHHHH
Confidence 4467788787655576 99999987542 33455547888766655322 1100 0 122 2335566666777
Q ss_pred HHHHhCCCCC
Q 008100 173 QLKSLGFSYD 182 (577)
Q Consensus 173 ~l~~lGi~~D 182 (577)
++.++|+..+
T Consensus 221 ~~lA~GlDp~ 230 (477)
T 1r6t_A 221 DIIACGFDIN 230 (477)
T ss_dssp HHHTTCCCTT
T ss_pred HHHHhCCCCC
Confidence 8888887544
No 67
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=76.18 E-value=6.6 Score=41.04 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=47.6
Q ss_pred CCcEEEEcCCCCCCC-CCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHH
Q 008100 93 KPKFYVLDMFPYPSG-AGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR 171 (577)
Q Consensus 93 ~~~f~i~~~pPypng-~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (577)
+++++++.|.= |+| . |||||.... ..+.+++..-|..|....|=++ ++.... ...+.+.++...+.
T Consensus 76 ~~~~~vy~G~~-PTg~~-lHLGh~v~~---~~~~~lQ~~~~~~v~i~I~D~~-------~~l~~~-~~~e~i~~~~~~~~ 142 (395)
T 3i05_A 76 GQPFYLYTGRG-PSSES-MHMGHLIPF---MFTKWLQDSFRVPLVIQMTDDE-------KFYFRN-IPMEQVEAMTTENI 142 (395)
T ss_dssp TCCEEEEEEEC-CCSSC-CBGGGSHHH---HHHHHHHHHHTCCEEEEECHHH-------HHHHSC-CCHHHHHHHHHHHH
T ss_pred CCCeEEEEeec-CCCcc-chHHHHHHH---HHHHHHHHhcCCcEEEEEcchH-------HHhcCC-CCHHHHHHHHHHHH
Confidence 34577777754 455 5 999997654 3445566665777766534322 122223 33455667777888
Q ss_pred HHHHHhCCCCC
Q 008100 172 TQLKSLGFSYD 182 (577)
Q Consensus 172 ~~l~~lGi~~D 182 (577)
.++.++|+..+
T Consensus 143 ~~~lA~GlDp~ 153 (395)
T 3i05_A 143 KDIIAMGFDPE 153 (395)
T ss_dssp HHHHTTTCCTT
T ss_pred HHHHHcCCCCC
Confidence 89999998554
No 68
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=75.99 E-value=0.98 Score=52.94 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=43.5
Q ss_pred cCccccCCcCeEEE-ecccchhhHh--hhhHHHhhccCCCC-CCHHHHHHHHHhhh
Q 008100 235 DGVSERGGHPVIRK-PMRQWMLKIT--EYADRLLDDLDDLD-WPESVKEMQRNWIG 286 (577)
Q Consensus 235 ~~~~~~~~~~~~~~-~~~~~~~~l~--~y~~~l~~~l~~~~-~p~~~~~~~~~~i~ 286 (577)
.+.|.+||.+++.+ .++|||++++ .+++.+++.+++.. +|+..++...+|+.
T Consensus 446 ~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~~~~~~~~P~~~~~~~~~~l~ 501 (967)
T 1wz2_A 446 KNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIID 501 (967)
T ss_dssp SCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHHHTTSCEESSTTHHHHHHHHH
T ss_pred CceECCCCCEEEEeccCCccceecCchHHHHHHHHhhhccEeeCccccchHHHhhh
Confidence 35677899998888 6999999998 48999999888775 78888888888883
No 69
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=75.76 E-value=3.4 Score=41.80 Aligned_cols=72 Identities=13% Similarity=0.116 Sum_probs=42.8
Q ss_pred cEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHH
Q 008100 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQL 174 (577)
Q Consensus 95 ~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l 174 (577)
++.++.|.=+ +|. ||||| +..+. .+.+++ ..|+++.+..|= .|++- .. .. ..+..+++...+..++
T Consensus 28 ~~~vy~G~~P-Tg~-lHlGh-l~~l~--~~~~lQ-~~g~~~~~~i~D-~~a~~-----~~-~~-~~e~i~~~~~~~~~~~ 93 (314)
T 2zp1_A 28 EKSAYIGFEP-SGK-IHLGH-YLQIK--KMIDLQ-NAGFDIIILLAD-LAAYL-----NQ-KG-ELDEIRKIGDYNKKVF 93 (314)
T ss_dssp SEEEEEEECC-CSS-CBHHH-HHHHH--HHHHHH-HTTEEEEEEECH-HHHHH-----TT-CC-CHHHHHHHHHHHHHHH
T ss_pred CCEEEEccCC-CCC-cchhh-HHHHH--HHHHHH-HCCCCEEEEEec-ceEec-----CC-CC-CHHHHHHHHHHHHHHH
Confidence 4556656433 577 99999 55442 344444 458888766652 22220 00 11 2345667778889999
Q ss_pred HHhCCC
Q 008100 175 KSLGFS 180 (577)
Q Consensus 175 ~~lGi~ 180 (577)
.++|+.
T Consensus 94 ~a~G~d 99 (314)
T 2zp1_A 94 EAMGLK 99 (314)
T ss_dssp HHTTCC
T ss_pred HhcCCC
Confidence 999984
No 70
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=74.07 E-value=3.5 Score=42.76 Aligned_cols=77 Identities=21% Similarity=0.334 Sum_probs=46.4
Q ss_pred CCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHH
Q 008100 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (577)
Q Consensus 93 ~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (577)
+++|+|+.|. -|+|. |||||.... + -.+++...|++|.+..+ |.|.+-. ......+..+.++.....
T Consensus 68 gk~~~v~sG~-~PTG~-lHLGhyv~~-~---~~~~lq~~~~~~~~~Ia-D~ha~t~------~~~~~~e~~r~~~~~~~~ 134 (372)
T 3a04_A 68 GERVAVLTGF-MPSGK-FHFGHKLTV-D---QLIYLQKNGFKVFVAIA-DAEAFAV------RRIGREEAVRIAVEEYIA 134 (372)
T ss_dssp TCCCEEEEEE-CCCSC-CBHHHHHHH-H---HHHHHHHTTCEEEEEEC-HHHHHHT------TCCCHHHHHHHHHHTTHH
T ss_pred CCCCEEEeCc-CCCcH-hHHHHHHHH-H---HHHHHHhCCCeEEEEEe-cchhhcc------CCCCCHHHHHHHHHHHHH
Confidence 4456777674 35787 999998753 2 24555557999865543 4333210 111222334556666777
Q ss_pred HHHHhCCCCC
Q 008100 173 QLKSLGFSYD 182 (577)
Q Consensus 173 ~l~~lGi~~D 182 (577)
++.++|+..+
T Consensus 135 ~~lA~GlDP~ 144 (372)
T 3a04_A 135 NMIALGLDPK 144 (372)
T ss_dssp HHHHHTCCTT
T ss_pred HHHHcCCChH
Confidence 8899999665
No 71
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=73.93 E-value=4.6 Score=42.38 Aligned_cols=77 Identities=14% Similarity=0.222 Sum_probs=46.5
Q ss_pred CCcEEEEcCCCCCCC-CCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHH
Q 008100 93 KPKFYVLDMFPYPSG-AGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR 171 (577)
Q Consensus 93 ~~~f~i~~~pPypng-~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (577)
++++.++.|.= |+| . |||||.... .++.+++..-|..+.+..| |.|.. .... ...+.+.++...+.
T Consensus 99 ~~p~~vy~G~~-PTg~~-lHLGh~v~~---~~~~~lQ~~~g~~~~i~Ia-D~~a~------l~~~-~~~e~i~~~~~~~~ 165 (406)
T 3tze_A 99 NRPFYLYTGRG-PSSKT-MHIGHTIPF---LLCKYMQDAFKIRLVIQIT-DDEKF------LWKS-MRLEDAMAYGRENI 165 (406)
T ss_dssp TCCEEEEEEEC-CCSSC-CBGGGHHHH---HHHHHHHHHHTCCEEEEEC-HHHHH------HHSS-CCHHHHHHHHHHHH
T ss_pred CCCeEEEEeeC-CCCCc-ccHHHHHHH---HHHHHHHHhcCCcEEEEee-ChHHH------cCCC-CCHHHHHHHHHHHH
Confidence 45677777754 455 5 999997764 2344455555777665433 32211 1112 23445667777888
Q ss_pred HHHHHhCCCCC
Q 008100 172 TQLKSLGFSYD 182 (577)
Q Consensus 172 ~~l~~lGi~~D 182 (577)
.++.++|+..+
T Consensus 166 ~~~lA~GlDp~ 176 (406)
T 3tze_A 166 KDIVTLGFDPK 176 (406)
T ss_dssp HHHHTTTCCGG
T ss_pred HHHHHcCCCcc
Confidence 89999998655
No 72
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=73.91 E-value=4.5 Score=42.89 Aligned_cols=78 Identities=18% Similarity=0.155 Sum_probs=46.5
Q ss_pred CCcEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHH
Q 008100 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (577)
Q Consensus 93 ~~~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (577)
++++.++.|.=+..|. |||||....+. +.+++...|.++.+..|=. |++-- . ..+ .+.+.++...+..
T Consensus 106 ~~~~~vy~G~dPTag~-LHLGh~v~~~~---~~~lQ~~~G~~~iilIgD~-ta~ig-----d-~lt-~e~i~~n~~~~~~ 173 (437)
T 1r6u_A 106 KKPFYLYTGRGPSSEA-MHVGHLIPFIF---TKWLQDVFNVPLVIQMTDD-EKYLW-----K-DLT-LDQAYGDAVENAK 173 (437)
T ss_dssp TCCEEEEEEECCCSSC-CBHHHHHHHHH---HHHHHHHHTCCEEEEECHH-HHHHH-----S-SCC-HHHHHHHHHHHHH
T ss_pred CCCcEEEEcccCCCCC-ccHHHHHHHHH---HHHHHHHhCCcEEEEEecc-eeeec-----C-CCC-HHHHHHHHHHHHH
Confidence 4567788787655576 99999987542 3355554788876665532 22100 0 122 2335566666677
Q ss_pred HHHHhCCCCC
Q 008100 173 QLKSLGFSYD 182 (577)
Q Consensus 173 ~l~~lGi~~D 182 (577)
++.++|+..+
T Consensus 174 ~~lA~GlDp~ 183 (437)
T 1r6u_A 174 DIIACGFDIN 183 (437)
T ss_dssp HHHTTTCCGG
T ss_pred HHHHhCCCcc
Confidence 8888887544
No 73
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=68.98 E-value=4 Score=42.34 Aligned_cols=74 Identities=22% Similarity=0.282 Sum_probs=40.2
Q ss_pred EEEcCCCCCCCCCCCcchhhHhHHHHH-HHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Q 008100 97 YVLDMFPYPSGAGLHVGHPLGYTATDI-LARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (577)
Q Consensus 97 ~i~~~pPypng~~LHiGHa~~~v~~Dv-i~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (577)
.++.|.= |+|. ||||| .++.=+ +.+++ ..|++|.+..| |-|++=. ...+.++. ..+++...+.+.+.
T Consensus 58 ~iy~G~~-PTg~-lHlG~---gvl~~~~~~~lQ-~~G~~~~~lIa-D~ha~i~----d~~~~~~~-~i~~~~~~~~~~~~ 125 (373)
T 3vgj_A 58 ICYDGFE-PSGR-MHIAQ---GLLKSIIVNKLT-SNGCTFIFWIA-DWFAHLN----NKMSGDLK-KIKKVGSYFIEVWK 125 (373)
T ss_dssp EEEEEEC-CCSS-CBHHH---HHHHHHHHHHHH-TTTCEEEEEEC-HHHHHHT----TGGGGCHH-HHHHHHHHHHHHHH
T ss_pred eEEeCCC-CCCC-ceehh---hHHHHHHHHHHH-HCCCcEEEEEe-cceeEec----CCCCCCHH-HHHHHHHHHHHHHH
Confidence 4555532 4466 99999 233332 44444 46998877666 4444300 00111111 23455566678899
Q ss_pred HhCCCCC
Q 008100 176 SLGFSYD 182 (577)
Q Consensus 176 ~lGi~~D 182 (577)
.+|+..+
T Consensus 126 a~G~dp~ 132 (373)
T 3vgj_A 126 SCGMNME 132 (373)
T ss_dssp HTTCCST
T ss_pred HcCCChh
Confidence 9998654
No 74
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=68.78 E-value=4.6 Score=41.32 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=39.3
Q ss_pred CCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCC
Q 008100 105 PSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (577)
Q Consensus 105 png~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~ 181 (577)
|+|. |||||.++.+. -+.++ +..|+++.+..| |-|++-. ...++.. ..+++.....++.++|+..
T Consensus 21 PTG~-lHLGn~~g~l~--~~~~l-Q~~G~~~~~~Ia-D~ha~t~------~~~dp~~-~~~~~~~~~~~~lA~Gldp 85 (340)
T 2g36_A 21 PTGK-LHIGHLVGALE--NWVKL-QEEGNECFYFVA-DWHALTT------HYDDVSK-LKEYTRDLVRGFLACGIDP 85 (340)
T ss_dssp CCSS-CBHHHHHTHHH--HHHHH-HHTTCEEEEEEC-HHHHHHH------HTTCCTT-HHHHHHHHHHHHHHTTCCT
T ss_pred CCCc-ccHHhHHHHHH--HHHHH-HHCCCCEEEEEe-cceeecC------CCCCHHH-HHHHHHHHHHHHHHhCCCh
Confidence 4576 99999988542 33333 447999877653 3444311 1234443 5555666777888899843
No 75
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=68.54 E-value=2.8 Score=43.79 Aligned_cols=74 Identities=18% Similarity=0.372 Sum_probs=42.8
Q ss_pred CcEE----EEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHH
Q 008100 94 PKFY----VLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINR 169 (577)
Q Consensus 94 ~~f~----i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~ 169 (577)
.+|+ ++.|. -|+|. |||||..+.+.. +.+++ .|+++.+..+ |-|.+- ...+ .+...+++..
T Consensus 30 ~p~~m~~ri~sG~-~PTG~-lHLGhyvGal~~--~~~LQ--~~~~~~~~Ia-D~hAlt-------~~~~-~~~lr~~~~~ 94 (388)
T 3prh_A 30 DPFTMKQTIFSGI-QPSGS-VTLGNYIGAMKQ--FVELQ--HDYNSYFCIV-DQHAIT-------VPQD-RLELRKNIRN 94 (388)
T ss_dssp -----CCEEEEEE-CCCSC-CBHHHHHHTHHH--HHHTT--TTSEEEEEEC-HHHHTT-------SCCC-HHHHHHHHHH
T ss_pred CCcccCCeEEEee-CCCCc-chHHHHHHHHHH--HHHHH--ccCcEEEEEe-cceeee-------cCCC-HHHHHHHHHH
Confidence 4565 66564 45787 999999876532 22333 4888866553 444431 0112 2345566677
Q ss_pred HHHHHHHhCCCCC
Q 008100 170 FRTQLKSLGFSYD 182 (577)
Q Consensus 170 ~~~~l~~lGi~~D 182 (577)
+..++.++|+..+
T Consensus 95 ~aa~~lA~GlDp~ 107 (388)
T 3prh_A 95 LAALYLAVGLDPE 107 (388)
T ss_dssp HHHHHHHTTCCTT
T ss_pred HHHHHHHhCCChh
Confidence 7888899999665
No 76
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=67.54 E-value=4.9 Score=41.06 Aligned_cols=66 Identities=17% Similarity=0.144 Sum_probs=38.2
Q ss_pred CCCCCCCcchhhHhHHHHHHHHHHHHcC-CcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCC
Q 008100 105 PSGAGLHVGHPLGYTATDILARLKRMQG-YNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (577)
Q Consensus 105 png~~LHiGHa~~~v~~Dvi~Ry~rm~G-~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~ 181 (577)
|+|. |||||..+.+ --+.++++ .| +++.+..| |-|++-.. + + ...+...+++..+..++.++|+..
T Consensus 10 PTg~-lHlGh~~g~l--~~~~~lQ~-~G~~~~~~~Ia-D~~a~~~~----~-~-~~~~~i~~~~~~~~~~~la~Gldp 76 (337)
T 2el7_A 10 PSGE-IHIGNYLGAI--KQWVAIGE-KLGRDAFFCIV-DYHALTNP----L-A-YDPSTLAQRTFEAALVNIAAGLDP 76 (337)
T ss_dssp SCSC-CBHHHHHTHH--HHHHHHHH-HHGGGEEEEEC-GGGGGGST----T-T-SCHHHHHHHHHHHHHHHHHHTCCT
T ss_pred CCCc-ccHHHHHHHH--HHHHHHHh-cCCCCEEEEEe-CceeecCC----C-C-CCHHHHHHHHHHHHHHHHHhCCCh
Confidence 4577 9999988764 22334444 57 88755544 33443100 0 1 122345666677778888999843
No 77
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=65.04 E-value=3.4 Score=42.31 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=39.7
Q ss_pred CCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCCC
Q 008100 105 PSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYD 182 (577)
Q Consensus 105 png~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~D 182 (577)
|+|. |||||..+.+- -+.+++. |+++.+..+ |-|.+-. ..++ +...++...+..++.++|+..+
T Consensus 15 PTG~-lHLGhy~g~l~--~~~~lQ~--~~~~~~~ia-D~ha~~~-------~~~~-~~~~~~~~~~~~~~lA~GlDp~ 78 (341)
T 3sz3_A 15 PSGE-LSIGNYLGALR--QWQQMQD--DYDCQYCVV-DLHAITV-------RQDP-QALHEATLDALAICLAVGVDPK 78 (341)
T ss_dssp SSSC-CBHHHHHHTGG--GHHHHHH--HSEEEEEEC-HHHHTTS-------CCCH-HHHHHHHHHHHHHHHHTTCCTT
T ss_pred CCCc-ccHHHHHHHHH--HHHHHHh--cCeEEEEEe-cceeEcC-------CCCH-HHHHHHHHHHHHHHHHcCCChh
Confidence 5687 99999988652 2334454 577755544 4443310 1222 4456667778888999999766
No 78
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=64.82 E-value=6.9 Score=40.12 Aligned_cols=77 Identities=17% Similarity=0.146 Sum_probs=42.9
Q ss_pred cEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHH
Q 008100 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQL 174 (577)
Q Consensus 95 ~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l 174 (577)
++.++.|.= |+|. |||||.+..+ -.+.++++ .|+++.+..|= -|++-. ...+. ..+..+++...+..++
T Consensus 40 ~~~vy~G~~-PTg~-lHlGhyl~~l--~~~~~lQ~-~G~~~~~~i~D-~~a~~~----~~~~~-~~e~i~~~~~~~~~~~ 108 (348)
T 2j5b_A 40 IFTAYNGFE-PSGR-IHIAQALITV--MNTNNMIE-CGGQMIIYIAD-WFAKMN----LKMNG-DINKIRELGRYFIEVF 108 (348)
T ss_dssp CEEEEEEEC-CCSS-CBHHHHHHHH--HHHHHHHH-TTEEEEEEECH-HHHHHT----TGGGG-CHHHHHHHHHHHHHHH
T ss_pred CCEEEeccC-CCCC-CchhHHHHHH--HHHHHHHH-cCCcEEEEecc-chhhhC----CCCCC-CHHHHHHHHHHHHHHH
Confidence 345555643 3376 9999943332 23445554 58888666552 222200 01111 2234566677788889
Q ss_pred HHhCCCCC
Q 008100 175 KSLGFSYD 182 (577)
Q Consensus 175 ~~lGi~~D 182 (577)
.++|+..+
T Consensus 109 la~Gldp~ 116 (348)
T 2j5b_A 109 KACGINLD 116 (348)
T ss_dssp HHTTCCGG
T ss_pred HHhcCCcc
Confidence 99998655
No 79
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=63.18 E-value=3.8 Score=42.51 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=25.1
Q ss_pred EEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCccc
Q 008100 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMG 140 (577)
Q Consensus 97 ~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G 140 (577)
.++.|.- |+|. |||||.++.+. +.++++ .|+++.+..|
T Consensus 37 ~vy~G~~-PTG~-lHlG~~~~~l~---~~~~~q-~g~~~i~~I~ 74 (372)
T 1n3l_A 37 KIYWGTA-TTGK-PHVAYFVPMSK---IADFLK-AGCEVTILFA 74 (372)
T ss_dssp EEEEEEC-CSSC-CBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred EEEeCcC-CCCc-ccHHHHHHHHH---HHHHHH-CCCCEEEEEc
Confidence 4555554 5686 99999877644 444455 7888766555
No 80
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=58.31 E-value=8.8 Score=43.06 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=42.0
Q ss_pred cEEEEcCCCCCCCCCCCcchhhHhHHHHH-HHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHH
Q 008100 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDI-LARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQ 173 (577)
Q Consensus 95 ~f~i~~~pPypng~~LHiGHa~~~v~~Dv-i~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (577)
++.++.|. -|+|. ||||| .++.-+ +.+++ ..|++|.+..| |-|++-. ...+.++ +..+++...+.++
T Consensus 40 ~~~vy~G~-~PTg~-lHLG~---~v~~~~~~~~lQ-~~G~~~~~lIa-D~ha~~~----d~~~~~~-e~i~~~~~~~~~~ 107 (690)
T 3p0j_A 40 LIRCYDGF-EPSGR-MHIAQ---GIFKAVNVNKCT-AAGCEFVFWVA-DWFALMN----DKVGGEL-EKIRIVGRYLIEV 107 (690)
T ss_dssp TEEEEEEE-CCCSC-CBHHH---HHHHHHHHHHHH-HTTEEEEEEEC-CGGGGGG----CTTTTHH-HHHHHHHHHHHHH
T ss_pred CceEEeee-cCCCc-chhHh---hHHHHHHHHHHH-HCCCcEEEEEe-eeEEEec----CCCcchH-HHHHHHHHHHHHH
Confidence 34555554 34566 99999 333322 44555 46998876666 5555410 0001111 2244455667778
Q ss_pred HHHhCCCCC
Q 008100 174 LKSLGFSYD 182 (577)
Q Consensus 174 l~~lGi~~D 182 (577)
+..+|+..+
T Consensus 108 ~lA~GlDp~ 116 (690)
T 3p0j_A 108 WKAAGMDMD 116 (690)
T ss_dssp HHHTTCCGG
T ss_pred HHHcCCChH
Confidence 999998554
No 81
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=58.26 E-value=13 Score=38.87 Aligned_cols=77 Identities=23% Similarity=0.251 Sum_probs=37.6
Q ss_pred EEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCccccccc--ChHHHHHHHHhCCCchhhHHHHHHHHHHH
Q 008100 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAF--GLPAEQYAIETGTHPKITTLRNINRFRTQ 173 (577)
Q Consensus 96 f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~--Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (577)
..++.|.= |+|..|||||... + -.+.++++ .|+++.+..|=.+. |.|- -+..++.....+.+.+++..++.+
T Consensus 65 ~~vy~G~d-PTg~sLHlGhlv~-l--~~l~~lQ~-~G~~~~~lIgD~haligdps-gk~~~R~~~~~e~i~~n~~~i~~~ 138 (392)
T 1y42_X 65 IGAYVGID-PTAPSLHVGHLLP-L--MPLFWMYL-EGYKAFTLIGGSTAKIGDPT-GRLKSRDHLSSSDATMNMTKIHYQ 138 (392)
T ss_dssp CEEEEEEC-CCSSSCBGGGHHH-H--HHHHHHHH-HTCEEEEEECTTTTTTCCCC-C-----------CHHHHHHHHHHH
T ss_pred CEEEEeec-CCCCCccHHHHHH-H--HHHHHHHH-cCCcEEEEEcCceeEeCCCC-CcchhhccCCHHHHHHHHHHHHHH
Confidence 34444532 3353399999773 2 23455554 59998776652221 2221 001111111223456677778777
Q ss_pred HHHhC
Q 008100 174 LKSLG 178 (577)
Q Consensus 174 l~~lG 178 (577)
+.++|
T Consensus 139 ~~a~~ 143 (392)
T 1y42_X 139 LKKLW 143 (392)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77766
No 82
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=53.22 E-value=6.3 Score=40.40 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=38.2
Q ss_pred CCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCCCC
Q 008100 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYD 182 (577)
Q Consensus 104 ypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~~D 182 (577)
-|+|. |||||..+.+.+ +.+++ .++++.+..+ |-|.+-. ..++ +...+++..+..++.++|+..+
T Consensus 23 ~PTG~-lHLGh~vg~l~~--~~~lQ--~~~~~~~~ia-D~hA~t~-------~~~~-~~~~~~~~~~~~~~lA~GlDp~ 87 (346)
T 3n9i_A 23 QPSGE-LTIGNYMGALRQ--WVQMQ--DDYDCIYCIV-DLHAITA-------RQDP-ALLRKRTLDTLALYLACGIDPK 87 (346)
T ss_dssp CSCSC-CBHHHHHHTHHH--HHTTT--TTSEEEEEEC-HHHHTTS-------CCCH-HHHHHHHHHHHHHHHHHTCCTT
T ss_pred CCCCc-ccHHHHHHHHHH--HHHHH--hhCcEEEEEe-cceeecC-------CCCH-HHHHHHHHHHHHHHHHcCCCcc
Confidence 35687 999998876411 12222 4677655444 4443210 1222 3455666677888889999766
No 83
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=51.12 E-value=9.6 Score=39.10 Aligned_cols=76 Identities=24% Similarity=0.250 Sum_probs=42.2
Q ss_pred cEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHH
Q 008100 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQL 174 (577)
Q Consensus 95 ~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l 174 (577)
++.++.|.= |+|. |||||.++.+. -+.++++ .+++.+.. -|.|++-.. ..++ +..+++...+..++
T Consensus 22 ~~~vysG~~-PTG~-lHLGn~~g~l~--~~~~lQ~--~~~~~~~I-aD~ha~~~~------~~~~-e~i~~~~~~~~~~~ 87 (351)
T 1yi8_B 22 RPRVLTGDR-PTGA-LHLGHLAGSLQ--NRVRLQD--EAELFVLL-ADVQALTDH------FDRP-EQVRENVLAVALDY 87 (351)
T ss_dssp CSEEEEEEC-CSSC-CBHHHHHHTHH--HHHHHTS--SSEEEEEE-CHHHHHHHH------TTCH-HHHHHHHHHHHHHH
T ss_pred CcEEEEeeC-CCCC-ccHHHHHHHHH--HHHHHHH--hCCeEEEE-ecchhhcCC------CCCH-HHHHHHHHHHHHHH
Confidence 344555543 3687 99999988641 2223333 26664443 344443110 1222 34566667778889
Q ss_pred HHhCCCCCCCCc
Q 008100 175 KSLGFSYDWNRE 186 (577)
Q Consensus 175 ~~lGi~~Dw~~~ 186 (577)
.++|+ |+++.
T Consensus 88 la~Gl--dp~k~ 97 (351)
T 1yi8_B 88 LAAGL--DPQKT 97 (351)
T ss_dssp HHHTC--CTTTE
T ss_pred HHhCC--Chhhc
Confidence 99998 54443
No 84
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=48.85 E-value=16 Score=37.31 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=39.5
Q ss_pred EEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Q 008100 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (577)
Q Consensus 97 ~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (577)
.++.|.= |+|. |||||..+.+. -+.+++. |+++.+..| |-|++-. ..++ +...++...+..++.+
T Consensus 6 ~i~sG~~-PTG~-lHLGn~vg~l~--~~~~lQ~--~~~~~~~Ia-D~ha~~~-------~~d~-~~i~~~~~~~~~~~lA 70 (348)
T 2yy5_A 6 RALTGIQ-ASGK-QHLGNYLGVMQ--SLIELQE--QCQLFVFVA-DLHSITV-------DFQP-QALKQNNFDLVRTLLA 70 (348)
T ss_dssp EEEEEEC-CCTT-CBHHHHHHTGG--GHHHHHH--HSEEEEEEC-HHHHTTS-------CCCH-HHHHHHHHHHHHHHHH
T ss_pred EEEEeeC-CCCc-ccHHHHHHHHH--HHHHHHh--CCcEEEEEc-ChhhccC-------CCCH-HHHHHHHHHHHHHHHH
Confidence 3444432 3476 99999987662 2234444 787755544 2222210 0122 2344556677788889
Q ss_pred hCCCCC
Q 008100 177 LGFSYD 182 (577)
Q Consensus 177 lGi~~D 182 (577)
+|+..+
T Consensus 71 ~Gldp~ 76 (348)
T 2yy5_A 71 VGLDPQ 76 (348)
T ss_dssp TTCCTT
T ss_pred hCCChh
Confidence 998544
No 85
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=44.88 E-value=19 Score=37.28 Aligned_cols=75 Identities=15% Similarity=0.067 Sum_probs=38.3
Q ss_pred EEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHHHHHHhCCCchhhHHHHH-HHHH----
Q 008100 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNI-NRFR---- 171 (577)
Q Consensus 97 ~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~-~~~~---- 171 (577)
.++.|. -|+|. |||||.+..+ -.+.++++ .|+++.+..|= -|++-. ...|.++ +..+++. ..+.
T Consensus 35 ~vy~G~-~PTg~-lHlG~yl~~l--~~~~~lQ~-~G~~~~~~iaD-~ha~~~----~~~g~~~-e~i~~~~~~~~~~~~~ 103 (375)
T 2cyc_A 35 QHYIGF-EISGY-IHLGTGLMAG--AKIADFQK-AGIKTRVFLAD-WHSWIN----DKLGGDL-EVIQEVALKYFKVGME 103 (375)
T ss_dssp BEEEEE-CCCSC-CBHHHHHHHH--HHHHHHHH-TTCBCEEEECH-HHHHHT----TGGGGCH-HHHHHHHHHTHHHHHH
T ss_pred EEEeCC-CCCCC-cCchHHHHHH--HHHHHHHH-CCCcEEEEecC-cEEEcC----CCCCCCH-HHHHHHHHHHHHHHHH
Confidence 444443 24476 9999955533 23445554 68888666552 222200 0112222 2223333 3344
Q ss_pred HHHHHhCCCCC
Q 008100 172 TQLKSLGFSYD 182 (577)
Q Consensus 172 ~~l~~lGi~~D 182 (577)
.++.++|+..+
T Consensus 104 ~~~la~G~dp~ 114 (375)
T 2cyc_A 104 KSIEVMGGDPK 114 (375)
T ss_dssp HHHHHTTCCGG
T ss_pred HHHHHhCCCcc
Confidence 78999998655
No 86
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=37.99 E-value=15 Score=38.74 Aligned_cols=78 Identities=18% Similarity=0.159 Sum_probs=35.1
Q ss_pred cEEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccCh---HHHHHHHHhCCCchhhHHHHHHHHH
Q 008100 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGL---PAEQYAIETGTHPKITTLRNINRFR 171 (577)
Q Consensus 95 ~f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Gl---pie~~a~~~g~~~~~~~~~~~~~~~ 171 (577)
++.++.|.= |+|+.|||||... --.+.+++ ..|+++.+..|= -|++ |.- +..++.....+.+.++...+.
T Consensus 37 ~~~vy~G~d-PTg~sLHlGh~v~---l~~l~~lQ-~~G~~~i~lIgD-~ta~igdpsg-k~~~R~~l~~e~i~~n~~~~~ 109 (432)
T 1h3f_A 37 PLTVKLGAD-PTRPDLHLGHAVV---LRKMRQFQ-ELGHKVVLIIGD-FTGMIGDPSG-RSKTRPPLTLEETRENAKTYV 109 (432)
T ss_dssp CCEEEEEEC-TTCCSCBHHHHHH---HHHHHHHH-HTTCEEEEEECC-CC----------------------HHHHHHHH
T ss_pred CcEEEEccc-CCCCCCchhhHHH---HHHHHHHH-HCCCCEEEEEcc-ceEEecCCCC-cccccccCCHHHHHHHHHHHH
Confidence 345555543 3442299999772 33445555 469998776663 3332 311 111111112234555666677
Q ss_pred HHHHHhCCC
Q 008100 172 TQLKSLGFS 180 (577)
Q Consensus 172 ~~l~~lGi~ 180 (577)
.++. -|+.
T Consensus 110 ~ql~-~~ld 117 (432)
T 1h3f_A 110 AQAG-KILR 117 (432)
T ss_dssp HHHT-TTSC
T ss_pred HHHH-HHhc
Confidence 7665 4443
No 87
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=37.60 E-value=23 Score=31.16 Aligned_cols=39 Identities=18% Similarity=0.032 Sum_probs=0.0
Q ss_pred ceEEECCCCeeeecCC---------CCCCCCCCCCCCcCCCCCCCCcCccCccccccccCCCCCC
Q 008100 506 PVVFLDGTGETVPLHE---------AELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKP 561 (577)
Q Consensus 506 Pv~~~~~~g~~~~~~~---------~~l~~~l~~~~~~~~~G~~~~~l~~~~~~v~~~~~~~g~~ 561 (577)
+.|.|.+||......+ .+..|.+|++-... ..||.||..
T Consensus 69 ~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~-----------------~~CP~Cgs~ 116 (139)
T 3a43_A 69 AVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAF-----------------LACPKCGSH 116 (139)
T ss_dssp CEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGG-----------------CSCSSSSCC
T ss_pred CcEECCCCCCEEecccccccccccccccccccccccccC-----------------CcCccccCC
No 88
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=37.55 E-value=17 Score=38.19 Aligned_cols=76 Identities=21% Similarity=0.239 Sum_probs=41.0
Q ss_pred EEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCccccccc--ChHHHHHHHHhCCCchhhHHHHHHHHHHH
Q 008100 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAF--GLPAEQYAIETGTHPKITTLRNINRFRTQ 173 (577)
Q Consensus 96 f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~--Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (577)
..++.|.= |+|+.|||||... --.+.+++ ..|+++.+..|=.+. |.|- -+..++..-..+.+.++...++.+
T Consensus 33 ~~iy~G~d-PTg~sLHlGh~v~---l~~~~~lQ-~~G~~~~~lIgd~ta~igdp~-gk~~~R~~l~~e~i~~n~~~~~~~ 106 (420)
T 1jil_A 33 VTLYCGAD-PTADSLHIGHLLP---FLTLRRFQ-EHGHRPIVLIGGGTGMIGDPS-GKSEERVLQTEEQVDKNIEGISKQ 106 (420)
T ss_dssp CEEEEEEC-CSSSSCBHHHHHH---HHHHHHHH-HTTCEEEEEECTTGGGTCCCT-TCSSCCCCCCHHHHHHHHHHHHHH
T ss_pred CEEEEeeC-CCCCCccHHHHHH---HHHHHHHH-HCCCcEEEEEcCceeEecCCC-ccccccccCCHHHHHHHHHHHHHH
Confidence 34444532 3343399999762 22344555 469998777663321 2221 000111111334566788888999
Q ss_pred HHHh
Q 008100 174 LKSL 177 (577)
Q Consensus 174 l~~l 177 (577)
+.++
T Consensus 107 ~~~~ 110 (420)
T 1jil_A 107 MHNI 110 (420)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8888
No 89
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=34.10 E-value=25 Score=26.38 Aligned_cols=16 Identities=6% Similarity=-0.037 Sum_probs=11.7
Q ss_pred ccCCCCCCcccccCcccc
Q 008100 554 TEHSSGKPARRETSTMPQ 571 (577)
Q Consensus 554 ~~~~~g~~~~R~tDtmD~ 571 (577)
.|+.|| +.|+..|+++
T Consensus 45 vc~~CG--~Y~gr~V~~~ 60 (60)
T 3v2d_5 45 VCPECG--YYAGRKVLEV 60 (60)
T ss_dssp CCTTTC--EETTEECCCC
T ss_pred EcCCCC--cCCCEEeecC
Confidence 578888 7777777764
No 90
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=28.26 E-value=33 Score=31.76 Aligned_cols=52 Identities=12% Similarity=0.044 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHHCCceeeeccCcccCCCCCccCCchhhccCccccCCcC
Q 008100 192 PAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHP 244 (577)
Q Consensus 192 ~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~Ls~~Ev~~~~~~~~~~~ 244 (577)
..+.+....++.+|.......+.....|-|+.||-...-.++-+ .|+.||.+
T Consensus 129 ~ehe~~~~~~l~~l~~~~~~~~~~~~~~~C~~CG~~~~g~~~p~-~CP~C~~~ 180 (191)
T 1lko_A 129 EFHEKRFLDFARNIKEGRVFLREQATKWRCRNCGYVHEGTGAPE-LCPACAHP 180 (191)
T ss_dssp HHHHHHHHHHHHHHHHTCSSEEEEEEEEEETTTCCEEEEEECCS-BCTTTCCB
T ss_pred HHHHHHHHHHHHhhhcccccccCCCceEEECCCCCEeeCCCCCC-CCCCCcCC
Confidence 45666667777776554434445556777999998875444433 79999986
No 91
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=26.53 E-value=39 Score=34.61 Aligned_cols=75 Identities=29% Similarity=0.303 Sum_probs=38.6
Q ss_pred EEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccCh---HHHHHHHHhCCCchhhHHHHHHHHHH
Q 008100 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGL---PAEQYAIETGTHPKITTLRNINRFRT 172 (577)
Q Consensus 96 f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Gl---pie~~a~~~g~~~~~~~~~~~~~~~~ 172 (577)
+.++.|.= |+|..||||| +..+. .+.++++ .|+++.+..|= -|++ |.- +..++..-..+...+++..+..
T Consensus 47 ~~vy~G~~-PTg~sLHLGh-l~~l~--~~~~lQ~-~G~~~~~lIaD-~hal~~dp~g-~~~~R~~l~~e~i~~n~~~~~~ 119 (356)
T 2pid_A 47 QTIYCGFD-PTADSLHVGH-LLALL--GLFHLQR-AGHNVIALVGG-ATARLGDPSG-RTKEREALETERVRANARALRL 119 (356)
T ss_dssp CEEEEEEC-CSSSSCBHHH-HHHHH--HHHHHHH-TTCEEEEEECT-TGGGTCCCTT-CSSCCCCCCHHHHHHHHHHHHH
T ss_pred CEEEEeec-CCCCcccHHH-HHHHH--HHHHHHH-CCCcEEEEEcc-ceeeecCCcc-cccccccCCHHHHHHHHHHHHH
Confidence 45555543 3452399999 44443 3555554 69988766653 2332 100 0000000123445666777777
Q ss_pred HHHHh
Q 008100 173 QLKSL 177 (577)
Q Consensus 173 ~l~~l 177 (577)
++.++
T Consensus 120 ~~~a~ 124 (356)
T 2pid_A 120 GLEAL 124 (356)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77776
No 92
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=25.30 E-value=35 Score=34.40 Aligned_cols=75 Identities=25% Similarity=0.374 Sum_probs=36.8
Q ss_pred EEEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccCh---HHHHHHHHhCCCchhhHHHHHHHHHH
Q 008100 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGL---PAEQYAIETGTHPKITTLRNINRFRT 172 (577)
Q Consensus 96 f~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Gl---pie~~a~~~g~~~~~~~~~~~~~~~~ 172 (577)
+.++.|.= |+|..|||||... --.+.+++ ..|+++.+..| |-|++ |. -+..++..-..+...++.+.+++
T Consensus 34 ~~vy~G~~-PTg~slHlGh~l~---l~~~~~lQ-~~g~~~~~~i~-D~~a~~~dp~-g~~~~R~~l~~e~i~~n~~~~~~ 106 (322)
T 2yxn_A 34 IALVCGFD-PTADSLHLGHLVP---LLCLKRFQ-QAGHKPVALVG-GATGLIGDPS-FKAAERKLNTEETVQEWVDKIRK 106 (322)
T ss_dssp CEEEEEEC-CSSSSCBHHHHHH---HHHHHHHH-HTTCEEEEEEC-TTGGGTCCCT-TCSSCCCCCCHHHHHHHHHHHHH
T ss_pred CEEEEeec-CCCCcccHHHHHH---HHHHHHHH-HcCCcEEEEEc-cceeeecCCC-CcccccccCCHHHHHHHHHHHHH
Confidence 34444532 3343399999762 22344554 45898876665 22332 10 00001111123345666666677
Q ss_pred HHHHh
Q 008100 173 QLKSL 177 (577)
Q Consensus 173 ~l~~l 177 (577)
++..+
T Consensus 107 ~~~~~ 111 (322)
T 2yxn_A 107 QVAPF 111 (322)
T ss_dssp HHGGG
T ss_pred HHHHH
Confidence 76654
No 93
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=25.04 E-value=41 Score=35.27 Aligned_cols=77 Identities=25% Similarity=0.276 Sum_probs=39.6
Q ss_pred EEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCccccccc--ChHHHHHHHHhCCCchhhHHHHHHHHHHHH
Q 008100 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAF--GLPAEQYAIETGTHPKITTLRNINRFRTQL 174 (577)
Q Consensus 97 ~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~--Glpie~~a~~~g~~~~~~~~~~~~~~~~~l 174 (577)
.++.|.= |+|+.|||||... --.+.+++ ..|+++.+..|=.+. |.|- -+..++..-..+.+.++...+++|+
T Consensus 32 ~iy~G~d-PTg~sLHlGh~v~---l~~l~~lQ-~~G~~~i~lIgd~ta~igdps-gk~~~R~~l~~e~i~~n~~~~~~q~ 105 (419)
T 2ts1_A 32 TLYCGFD-PTADSLHIGHLAT---ILTMRRFQ-QAGHRPIALVGGATGLIGDPS-GKKSERTLNAKETVEAWSARIKEQL 105 (419)
T ss_dssp EEEEEEC-CSSSSCBGGGHHH---HHHHHHHH-HTTCEEEEEECTTGGGTCCCT-TCSSCCCCCCHHHHHHHHHHHHHHH
T ss_pred EEEEeeC-CCCCCccHHHHHH---HHHHHHHH-HCCCcEEEEEcCceeEecCCC-CccccccCCCHHHHHHHHHHHHHHH
Confidence 4444532 3343399999762 22344555 469998777663321 2221 0001111112345667777888877
Q ss_pred HH-hCC
Q 008100 175 KS-LGF 179 (577)
Q Consensus 175 ~~-lGi 179 (577)
.+ |++
T Consensus 106 ~~~L~~ 111 (419)
T 2ts1_A 106 GRFLDF 111 (419)
T ss_dssp TTSSCS
T ss_pred HHHHhc
Confidence 76 344
No 94
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=24.81 E-value=26 Score=19.84 Aligned_cols=10 Identities=20% Similarity=1.016 Sum_probs=8.1
Q ss_pred cccceEEECC
Q 008100 503 EPIPVVFLDG 512 (577)
Q Consensus 503 ~PIPv~~~~~ 512 (577)
-|+||+||..
T Consensus 4 kpvpiiycnr 13 (21)
T 8tfv_A 4 KPVPIIYCNR 13 (26)
T ss_dssp CCCCCEEEEG
T ss_pred CcccEEEEcC
Confidence 4899999964
No 95
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=24.05 E-value=42 Score=35.33 Aligned_cols=75 Identities=27% Similarity=0.303 Sum_probs=36.7
Q ss_pred EEEcCCCCCCCCCCCcchhhHhHHHHHHHHHHHHcCCcccCcccccccChHHHH-HHHHhCCCchhhHHHHHHHHHHHHH
Q 008100 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQ-YAIETGTHPKITTLRNINRFRTQLK 175 (577)
Q Consensus 97 ~i~~~pPypng~~LHiGHa~~~v~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~-~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (577)
.++.|.= |+|+.||||| +..+. .+.+++ ..|+++.+..| |-||+=... +..++.....+.+.++...+++++.
T Consensus 34 ~iy~G~d-PTg~sLHLGh-lv~l~--~l~~lQ-~~G~~~i~lIg-D~ta~igdpsk~~~R~~~~~e~i~~n~~~~~~~~~ 107 (432)
T 2jan_A 34 TVYAGFD-PTAPSLHAGH-LVPLL--TLRRFQ-RAGHRPIVLAG-GATGMIGDPRDVGERSLNEADTVAEWTERIRGQLE 107 (432)
T ss_dssp EEEEEEC-CSSSSCBGGG-HHHHH--HHHHHH-HTTCEEEEEEC-HHHHHHHCCCCTTTSGGGHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeC-CCCCCcCHHH-HHHHH--HHHHHH-HCCCcEEEEEc-CcEEEccCCcccccccCCCHHHHHHHHHHHHHHHH
Confidence 4444532 3452399999 44333 355555 46999877765 223321000 0000000112345566777777766
Q ss_pred Hh
Q 008100 176 SL 177 (577)
Q Consensus 176 ~l 177 (577)
++
T Consensus 108 ~~ 109 (432)
T 2jan_A 108 RF 109 (432)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 96
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=23.50 E-value=49 Score=23.50 Aligned_cols=31 Identities=16% Similarity=0.095 Sum_probs=23.4
Q ss_pred cccCCCCCccCCchhhcc---CccccCCcCeEEE
Q 008100 218 VNWCPALGTVLANEEVVD---GVSERGGHPVIRK 248 (577)
Q Consensus 218 v~wc~~~~t~Ls~~Ev~~---~~~~~~~~~~~~~ 248 (577)
+|=|-+|++.++++|++. -+|+.||..++.+
T Consensus 3 iY~C~rCg~~fs~~el~~lP~IrCpyCGyrii~K 36 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFM 36 (48)
T ss_dssp --CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEEC
T ss_pred EEEeeccCCCccHHHHhhCCCcccCccCcEEEEE
Confidence 456999999999999963 3688899876554
No 97
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=22.67 E-value=78 Score=35.41 Aligned_cols=67 Identities=9% Similarity=-0.094 Sum_probs=41.3
Q ss_pred CCCCCCCcchhhHhHHHHHHHHHHHH-cCCcccCcccccccChHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCC
Q 008100 105 PSGAGLHVGHPLGYTATDILARLKRM-QGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (577)
Q Consensus 105 png~~LHiGHa~~~v~~Dvi~Ry~rm-~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lGi~ 180 (577)
++|. |||||+-... -.+..|+++ -|..|.+..|=++.=+ -.+.|.. .+.++++...+.+.++.+|..
T Consensus 390 s~g~-lHLGh~v~~~--k~l~~~~~~~~g~~v~ilIaD~~A~i-----~d~~g~~-~e~i~~~~~y~~~~~~alG~d 457 (690)
T 3p0j_A 390 ALLK-VPLDVAEGMI--KVTKDFIAAHPEGTVTLVLPDWSAVA-----SDEITGV-EKDISAALQVNCALLKAYGLP 457 (690)
T ss_dssp CCSS-CBHHHHHHHH--HHHHHHHHHCSSCEEEEEECTTHHHH-----TTCTTCC-HHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCC-cccchHHHHH--HHHHHHHHHcCCCeEEEEEecchhhh-----CCCCCCC-HHHHHHHHHHHHHHHHhcCCC
Confidence 8887 9999998743 234456555 4778877766443211 0112222 344566666778889999985
Done!