RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 008100
(577 letters)
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase.
Length = 963
Score = 1095 bits (2834), Expect = 0.0
Identities = 444/567 (78%), Positives = 484/567 (85%), Gaps = 4/567 (0%)
Query: 11 LPQSFSLQKQCTSFTVVKRPSWFNSCSTSGAIVRCSVNEIEEQKQKQQVVKRAYPFHEIE 70
+ + + + F +R S + + KRAYPFHEIE
Sbjct: 29 VSSAQTPASASSYFRRSRRGGVSRS--LTRRAFAAPSALTSTTAKTTPAAKRAYPFHEIE 86
Query: 71 PKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRM 130
PKWQ YWE NRTFRTPD++DTSKPKFYVLDMFPYPSGAGLHVGHP GYTATDILAR KRM
Sbjct: 87 PKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRM 146
Query: 131 QGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTI 190
QGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTL+NI RFR+QLKSLGFSYDW+REIST
Sbjct: 147 QGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKSLGFSYDWDREISTT 206
Query: 191 EPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPM 250
EP YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG+SERGGHPVIRKPM
Sbjct: 207 EPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPM 266
Query: 251 RQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKIT 310
RQWMLKIT YADRLL+DLDDLDWPES+KEMQRNWIGRSEGAE+DF VLD +G+ERD KIT
Sbjct: 267 RQWMLKITAYADRLLEDLDDLDWPESIKEMQRNWIGRSEGAELDFSVLDGEGKERDEKIT 326
Query: 311 VYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTG 370
VYTTRPDT+FGATYLVVAPEHPLLSSL + Q + +EEY + ASRKSDLERTELQKEKTG
Sbjct: 327 VYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERTELQKEKTG 386
Query: 371 VFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMP 430
VF+G YA NPA+GEAIPIWVADYVLGSYGTGAIMAVPAHDTRD EFA KFD+ I VV P
Sbjct: 387 VFTGSYAINPATGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKP 446
Query: 431 DDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKL 490
D + +EKAYTGEG+IVNSS+ SGLDINGLS +EA KVIEW E+TGNGKKKVNYKL
Sbjct: 447 ADGNEDDAEKAYTGEGVIVNSSS--SGLDINGLSSKEAAKKVIEWLEETGNGKKKVNYKL 504
Query: 491 RDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSW 550
RDWLFARQRYWGEPIPVVFL+ +GE VP+ E++LPLTLPELDDFTPTGTGEPPL+KAVSW
Sbjct: 505 RDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGEPPLAKAVSW 564
Query: 551 VQTTEHSSGKPARRETSTMPQWAGSCW 577
V T + SSGKPARRET+TMPQWAGSCW
Sbjct: 565 VNTVDPSSGKPARRETNTMPQWAGSCW 591
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 933 bits (2415), Expect = 0.0
Identities = 305/516 (59%), Positives = 366/516 (70%), Gaps = 22/516 (4%)
Query: 63 AYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATD 122
Y EIE KWQ YWE N+TF+T ++ S K+YVLDMFPYPSG GLH+GH YT D
Sbjct: 4 RYNPKEIEKKWQKYWEENKTFKTTED---SSKKYYVLDMFPYPSG-GLHMGHVRNYTIGD 59
Query: 123 ILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYD 182
++AR KRMQGYNVLHPMGWDAFGLPAE AI+TGTHP T NI + QLKSLGFSYD
Sbjct: 60 VIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSLGFSYD 119
Query: 183 WNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGG 242
W+REI+T +P YYKWTQWIFL+L ++GLAY+ E PVNWCP GTVLANE+V+DG R G
Sbjct: 120 WSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCG 179
Query: 243 HPVIRKPMRQWMLKITEYADRLLDDLDDL-DWPESVKEMQRNWIGRSEGAEMDFRVLDSD 301
PV +K +RQW LKIT+YAD LLDDLD L DWPE VK MQRNWIGRSEGAE+ F+V DSD
Sbjct: 180 APVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIGRSEGAEVTFKVEDSD 239
Query: 302 GQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLER 361
KI V+TTRPDT+FGATYLV+APEHPL+ L Q+ + + +KSDLER
Sbjct: 240 E-----KIEVFTTRPDTLFGATYLVLAPEHPLVEKL--AEQNPAVAAFIEECKKKSDLER 292
Query: 362 TELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFD 421
KEKTGVF+G YA +P +GE IP+W+ADYVL YGTGA+MAVPAHD RD EFA K+
Sbjct: 293 QTETKEKTGVFTGLYAIHPLTGEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYG 352
Query: 422 ISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGN 481
+ I V+ P D SE+AYTG+G+++NS L +GL +EA +I W E+ G
Sbjct: 353 LPIKPVIEPGDGDEDISEEAYTGDGVLINSGEL------DGLDSEEAKEAIIAWLEEKGL 406
Query: 482 GKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGE 541
GK+KVNY+LRDW +RQRYWGEPIP++ + VP+ E +LP+ LPE D P GT
Sbjct: 407 GKRKVNYRLRDWGISRQRYWGEPIPIIHCE-DCGIVPVPEEDLPVVLPE--DVVPDGT-G 462
Query: 542 PPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW 577
PL+K WV T GKPARRET TM + GS W
Sbjct: 463 SPLAKHPEWVNVTCPKCGKPARRETDTMDTFVGSSW 498
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 742 bits (1917), Expect = 0.0
Identities = 283/516 (54%), Positives = 354/516 (68%), Gaps = 22/516 (4%)
Query: 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDI 123
Y EIE KWQ W+ N+TF+ D D+SKPK+Y+L MFPYPSGA LH+GH YT TD+
Sbjct: 1 YNHIEIEEKWQQKWDENKTFKVTD--DSSKPKYYILSMFPYPSGA-LHMGHVRNYTITDV 57
Query: 124 LARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDW 183
L+R RM+GYNVLHP+GWDAFGLPAE AI+ G HP T NI + QL++LGFSYDW
Sbjct: 58 LSRYYRMKGYNVLHPIGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQALGFSYDW 117
Query: 184 NREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVV-DGVSERGG 242
+REI+T +P YYKWTQWIFL+L ++GLAY E VNWCP GTVLANE+V DG S RG
Sbjct: 118 DREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGD 177
Query: 243 HPVIRKPMRQWMLKITEYADRLLDDLDDLD-WPESVKEMQRNWIGRSEGAEMDFRVLDSD 301
PV +K ++QW LKIT YA+ LL+DL++LD WPESVKEMQRNWIG+SEG E+ F++ D D
Sbjct: 178 TPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKSEGVEITFKIADHD 237
Query: 302 GQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLER 361
KITV+TTRPDTIFG TYL +APEHPL+ + + + + K+ ER
Sbjct: 238 E-----KITVFTTRPDTIFGVTYLALAPEHPLVE--KAAENNPKVAAFIKKILNKTVAER 290
Query: 362 TELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFD 421
T+ KEK GV +G A +P +GE IPIWVA+YVL YGTGA+M VPAHD RD EFA K+
Sbjct: 291 TKATKEKKGVDTGIKAIHPLTGEKIPIWVANYVLMEYGTGAVMGVPAHDERDFEFAQKYG 350
Query: 422 ISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGN 481
+ I V+ P ++ S AYT +G++VNS NGL+ EA + +I+ EK G
Sbjct: 351 LPIKPVIDPAEKDLSL-TAAYTEDGVLVNSGEF------NGLNSSEARNAIIDMLEKEGK 403
Query: 482 GKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGE 541
GK+KVNY+LRDW F+RQRYWGEPIP++ + G VP+ E +LP+ LPE + G
Sbjct: 404 GKRKVNYRLRDWGFSRQRYWGEPIPIIHCE-DGGVVPVPEEDLPVILPEDVVYDG--DGG 460
Query: 542 PPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW 577
PLS+ WV T S GKPA RET TM +AGS W
Sbjct: 461 SPLSRIPEWVNVTCPSCGKPALRETDTMDTFAGSSW 496
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 728 bits (1881), Expect = 0.0
Identities = 270/518 (52%), Positives = 326/518 (62%), Gaps = 22/518 (4%)
Query: 62 RAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTAT 121
Y EIE KWQ WE + F DE KFYVL MFPYPSGA LHVGH YT
Sbjct: 3 SRYNPREIEEKWQKRWEEAKVFEA-DEDSDKPEKFYVLVMFPYPSGA-LHVGHVRNYTIG 60
Query: 122 DILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181
D++AR KRMQGYNVLHPMGWDAFGLPAE AI+ GT P T NI + QLKSLGFS
Sbjct: 61 DVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSI 120
Query: 182 DWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERG 241
DW RE +T +P YYKW QW FL+L ++GLAY+ E PVNWCP GTVLANE+V+DG R
Sbjct: 121 DWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRC 180
Query: 242 GHPVIRKPMRQWMLKITEYADRLLDDLDDLD--WPESVKEMQRNWIGRSEGAEMDFRVLD 299
G PV K + QW KIT+YAD LLDDLD L WPE+VK MQRNWIG SEG E+ F V
Sbjct: 181 GEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVV-- 238
Query: 300 SDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDL 359
DG+E + I V+TTRPDT+FG TY+V+APEHPL+ LV+ Q+ + E+ + +
Sbjct: 239 -DGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVV 297
Query: 360 ERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALK 419
E EK GVF G YA NP +GE IP+W+A+YVL YGTGA+M VPAHD RD EFA K
Sbjct: 298 ESVPAHAEKDGVFLGGYAINPVNGEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATK 357
Query: 420 FDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKT 479
+ + I V+MP+ +K Y GEG+++NS L +GL +EA K+ K
Sbjct: 358 YKLPIKKVIMPEGTV---GKKVYEGEGVLINSGGL------DGLDYEEAKVKIRCGLVKR 408
Query: 480 GNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGT 539
G G+ VNY+LRDWL +RQRYWGEPIP++ + VP+ E LP+ LPE TG
Sbjct: 409 GLGQWFVNYRLRDWLKSRQRYWGEPIPIIHCE-DCGVVPVPEDWLPVKLPERVRGLGTG- 466
Query: 540 GEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW 577
PL WV + A RET TM + S W
Sbjct: 467 --SPLPWDEEWVIES--LPDSTAYRETDTMDTFIDSSW 500
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 274 bits (702), Expect = 9e-88
Identities = 105/195 (53%), Positives = 127/195 (65%), Gaps = 30/195 (15%)
Query: 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIE 154
KFY+L MFPYPSGA LHVGH YT DI+AR KRMQGYNVL PMG+DAFGLPAE AI+
Sbjct: 1 KFYILVMFPYPSGA-LHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIK 59
Query: 155 TGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214
G P+ T NI + + QLK +GFSYDW RE +T +P YYK+TQW+FL+L ++GLAY+
Sbjct: 60 IGRDPEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKK 119
Query: 215 EVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKI--TEYADRLLDDLDDLD 272
E PVNWC K + QW LK TE+ ++LL DL+ LD
Sbjct: 120 EAPVNWC--------------------------KLLDQWFLKYSETEWKEKLLKDLEKLD 153
Query: 273 -WPESVKEMQRNWIG 286
WPE V+ MQ NWIG
Sbjct: 154 GWPEEVRAMQENWIG 168
Score = 34.5 bits (80), Expect = 0.13
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 490 LRDWL-FARQRYWGEPIPVVFL 510
+W+ +RQRYWG PIP
Sbjct: 163 QENWIGCSRQRYWGTPIPWTDT 184
>gnl|CDD|222257 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, Domain 2. This
is a family of the conserved region of Leucine-tRNA
ligase or Leucyl-tRNA synthetase, EC:6.1.1.4.
Length = 178
Score = 240 bits (616), Expect = 5e-77
Identities = 85/191 (44%), Positives = 118/191 (61%), Gaps = 15/191 (7%)
Query: 289 EGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEE 348
EGAE+DF+V SD KI V+TTRPDT+FG T+L +APEHPL L ++ +
Sbjct: 1 EGAEIDFKVEGSDE-----KIEVFTTRPDTLFGVTFLALAPEHPLAKKL--AEKNPELAA 53
Query: 349 YKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPA 408
+ + S +ERT EK G+F+G YA +P +GE IPIW+A++VL YGTGA+MAVPA
Sbjct: 54 FIEECKKTSTIERTIATAEKEGIFTGLYAIHPITGEKIPIWIANFVLMDYGTGAVMAVPA 113
Query: 409 HDTRDHEFALKFDISIHSVVMPDDESSSQ--SEKAYTGEGLIVNSSNLISGLDINGLSCQ 466
HD RD EFA K+++ I V+ P+D E+AYT +G+++NS +GL +
Sbjct: 114 HDQRDFEFAKKYNLPIKQVIKPEDGDEDDLIMEEAYTEKGILINSGEF------DGLDSE 167
Query: 467 EATSKVIEWAE 477
EA + E E
Sbjct: 168 EAKEAIAEKLE 178
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 219 bits (559), Expect = 7e-62
Identities = 137/532 (25%), Positives = 192/532 (36%), Gaps = 159/532 (29%)
Query: 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDI 123
Y EIE KW WE + F+ D KP F + P +G+ LH+GH L YT DI
Sbjct: 5 YDPKEIEEKWYKKWEESGYFKPDPNED--KPPFSIDTPPPNVTGS-LHMGHALNYTLQDI 61
Query: 124 LARLKRMQGYNVLHPMGWDAFGLPA----EQYAIETGTHP---------KIT---TLRNI 167
LAR KRM+GYNVL P G D G+ E+ G K +
Sbjct: 62 LARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESG 121
Query: 168 NRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTV 227
R QL+ LG S DW+RE T++P + Q F++L ++GL Y+ E VNWCP T
Sbjct: 122 GTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTA 181
Query: 228 LANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGR 287
+++ EV K + + I
Sbjct: 182 ISDIEV------------EYKEVEGKLYYIK----------------------------- 200
Query: 288 SEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIE 347
+ + D DG + V TTRP+T+ G T + V P+ E
Sbjct: 201 -------YPLADGDGY-----LVVATTRPETLLGDTAVAVHPDD---------------E 233
Query: 348 EYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVAD-YVLGSYGTGAIMAV 406
YK+L G P G IPI +AD YV +GTGA+
Sbjct: 234 RYKHLV--------------------GKEVILPLVGREIPI-IADEYVDPEFGTGAVKIT 272
Query: 407 PAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTG----------------EGLIVN 450
PAHD D+E + ++ + +++ D + ++ + G +GL+V
Sbjct: 273 PAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVK 332
Query: 451 SSNLISGLDINGLSCQEATSKVIE------WAEKTGNGKKKV------------------ 486
I + C E IE W K KK
Sbjct: 333 ----IEPHKHSVGHC-ERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEK 387
Query: 487 NY-----KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDD 533
Y +RDW +RQ +WG IPV + G V E E
Sbjct: 388 RYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEEEPEDPAAAEKCP 439
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 194 bits (496), Expect = 2e-53
Identities = 127/520 (24%), Positives = 198/520 (38%), Gaps = 152/520 (29%)
Query: 63 AYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATD 122
Y HE+E KW WE + F+ PD +++KP F + P +G+ LH+GH L ++ D
Sbjct: 4 DYDPHEVEKKWYKKWEKSGFFK-PDG-NSNKPPFCIDIPPPNVTGS-LHIGHALNWSIQD 60
Query: 123 ILARLKRMQGYNVLHPMGWDAFGLPAE-----QYAIET------GTHPKIT-----TLRN 166
I+AR KRM+GYNVL G D G+ + + E G +
Sbjct: 61 IIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEES 120
Query: 167 INRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGT 226
+ Q+K LG S DW+RE T++ K + F++L ++GL Y+ E VNW P L T
Sbjct: 121 GGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNT 180
Query: 227 VLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIG 286
+++ EV EY + + + +I
Sbjct: 181 AISDIEV-------------------------EYKEV---------------KGKLYYI- 199
Query: 287 RSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNI 346
+ + + + V TTRP+T+FG T + V PE
Sbjct: 200 -------RYPLANGSKD----YLVVATTRPETMFGDTAVAVHPED--------------- 233
Query: 347 EEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAV 406
E YK+L G P +G IPI +YV +GTGA+
Sbjct: 234 ERYKHLI--------------------GKKVILPLTGRKIPIIADEYVDMEFGTGAVKVT 273
Query: 407 PAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSS--NLISGLDINGL- 463
PAHD D+E+ + ++ +++ DE +E A +GL + ++ L GL
Sbjct: 274 PAHDFNDYEWGKRHNLEFINIL---DEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLL 330
Query: 464 ------------------------------SCQEATSKVIEWAEKT------GNGKKKVN 487
++ K +E AE+ +K+
Sbjct: 331 VKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRYL 390
Query: 488 Y---KLRDWLFARQRYWGEPIPVVFLDGTGET-VPLHEAE 523
++DW +RQ WG IPV + GE V E
Sbjct: 391 NWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPL 430
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 176 bits (449), Expect = 3e-47
Identities = 77/194 (39%), Positives = 98/194 (50%), Gaps = 20/194 (10%)
Query: 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFP-YPSGAGLHVGHPLGYTATD 122
Y E+E KWQ WE T++ + D KP Y +D P SG+ LH+GH YT TD
Sbjct: 10 YDPEELEEKWQKIWEEEGTYK--FDPDERKPV-YSIDTPPPTVSGS-LHIGHVFSYTHTD 65
Query: 123 ILARLKRMQGYNVLHPMGWDAFGLPAEQYAIET-GTHPKIT------------TLRNINR 169
+AR +RM+GYNV P GWD GLP E+ + G T + +
Sbjct: 66 FIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTDEDEKK 125
Query: 170 FRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLA 229
FR + LG S DW+ E TI P Y + +Q FL L K+GL Y+AE PV WCP T +A
Sbjct: 126 FRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIA 185
Query: 230 NEEVVDGVSERGGH 243
EV ER G
Sbjct: 186 QAEVEY--REREGK 197
Score = 40.2 bits (95), Expect = 0.003
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 236 GVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW-PESVKEMQRNWIGRSEGAEMD 294
ER P+ RQW +K+ + + LL+ +++W PE ++ NWI EG D
Sbjct: 341 KFCERCDTPLEILVTRQWFIKVLDLKEELLERGKEINWYPEHMRVRLENWI---EGLNWD 397
Score = 37.5 bits (88), Expect = 0.020
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 492 DWLFARQRYWGEPIPVVFLDGTGETVPLHEAELP 525
DW +RQRY+G PIPV + G + E +LP
Sbjct: 397 DWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLP 430
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 169 bits (431), Expect = 1e-45
Identities = 128/506 (25%), Positives = 190/506 (37%), Gaps = 117/506 (23%)
Query: 72 KWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQ 131
+ +W+ F+ E KP F + D P +G LH+GH L T DI+ R KRMQ
Sbjct: 1 QIYQFWDEQGYFKKSLENGKGKPSFTIHDGPPNATGL-LHIGHALNKTLKDIVIRYKRMQ 59
Query: 132 GYNVLHPMGWDAFGLPAEQ-----YAIETG-THPKITT-----------LRNINRFRTQL 174
G++VL GWD GLP EQ I+ K+ + + R+Q
Sbjct: 60 GFDVLWVPGWDHHGLPTEQKVEKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQF 119
Query: 175 KSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVV 234
K LG S DW+RE T++P +F++L +GL Y+ + PVNW PAL T L+ EV
Sbjct: 120 KRLGVSGDWDREYFTLDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTALSEAEV- 178
Query: 235 DGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMD 294
EY D + +
Sbjct: 179 ------------------------EYKDV-----------------------KGPSIHVA 191
Query: 295 FRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNI--EEYKNL 352
F + D G + ++TT P T+ G T + V PE + T I E
Sbjct: 192 FPLADGKG----ASLVIWTTTPWTLPGNTAVAVNPE--FNYVKIRVTGEYYILAEALLKS 245
Query: 353 ASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTR 412
+K + L+ + G +P IPI DYV +GTGA+ PAH
Sbjct: 246 LYKKKKEDGEILEDFRGKELIGKKYIHPFVNREIPIIADDYVDMEFGTGAVHIAPAHGED 305
Query: 413 DHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSN--LISGLDINGL------- 463
D+E + ++ + P D+ + +E+A +GL + ++ L GL
Sbjct: 306 DYEVGKRHNL---EFINPVDDDGTYNEEAPEFQGLKRFKARKKIVELLTEKGLLLKIEPI 362
Query: 464 ----SCQEATSKVIE------W-------AEKTGNGKKKVNYK--------------LRD 492
+ I W AE +KV + ++D
Sbjct: 363 EHSYPHCWRSGTPIIYRATPQWFVRMKNLAEAALKAVEKVQFVPKWGEKRYGNWLENIQD 422
Query: 493 WLFARQRYWGEPIPVVFLDGTGETVP 518
W +RQR+WG PIP + TGE
Sbjct: 423 WCISRQRWWGHPIPAWYSKDTGEVYV 448
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 161 bits (409), Expect = 3e-44
Identities = 69/209 (33%), Positives = 107/209 (51%), Gaps = 25/209 (11%)
Query: 97 YVLDMFP-YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAE-----Q 150
+V+D P +G+ LH+GH L T DI+AR KRM+GYNVL P G D G+ + +
Sbjct: 3 FVIDTPPPNVTGS-LHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKK 61
Query: 151 YAIETGTHPKIT-----------TLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQ 199
IE T + + + R QLK LG S DW+RE T++P + Q
Sbjct: 62 LGIEGKTRHDLGREEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQ 121
Query: 200 WIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITE 259
F++L ++GL Y+ VNWCP L T +++ E V R G + QW +K+ +
Sbjct: 122 EAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIE----VCSRSGDVIEPLLKPQWFVKVKD 177
Query: 260 YADRLLDDL--DDLDW-PESVKEMQRNWI 285
A + L+ + D+ + PE +++ NW+
Sbjct: 178 LAKKALEAVKEGDIKFVPERMEKRYENWL 206
Score = 39.2 bits (92), Expect = 0.004
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 489 KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPE 530
+RDW +RQ +WG IP + G V E + +
Sbjct: 208 NIRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKAA 249
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
isoleucyl, leucyl, valyl and methioninyl tRNA
synthetases. Catalytic core domain of isoleucyl,
leucyl, valyl and methioninyl tRNA synthetases. These
class I enzymes are all monomers. However, in some
species, MetRS functions as a homodimer, as a result of
an additional C-terminal domain. These enzymes
aminoacylate the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. Enzymes in
this subfamily share an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids. MetRS has a significantly shorter
insertion, which lacks the editing function.
Length = 312
Score = 129 bits (325), Expect = 3e-33
Identities = 65/205 (31%), Positives = 84/205 (40%), Gaps = 44/205 (21%)
Query: 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYA-- 152
KFYV PY +G+ LH+GH L + D +AR KRM+GY V GWD GLP E A
Sbjct: 1 KFYVTTPPPYANGS-LHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAER 59
Query: 153 -----------IETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWI 201
E PK + + LG SYDW+ E T EP Y K + I
Sbjct: 60 KGGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELI 119
Query: 202 FLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYA 261
F +L ++GL Y RG HPV QW + ++
Sbjct: 120 FSRLYEKGLIY---------------------------RGTHPVRITE--QWFFDMPKFK 150
Query: 262 DRLLDDLDDLDW-PESVKEMQRNWI 285
++LL L PE VK W+
Sbjct: 151 EKLLKALRRGKIVPEHVKNRMEAWL 175
Score = 31.6 bits (72), Expect = 0.91
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 471 KVIEWAEKTG---NGKKKVNYK----LRDWLFARQRYWGEPIP 506
K+++ + K L DW +RQRYWG P+P
Sbjct: 152 KLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLP 194
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 134 bits (339), Expect = 6e-33
Identities = 135/559 (24%), Positives = 196/559 (35%), Gaps = 196/559 (35%)
Query: 66 FHEIEPKWQSYWENNRTFR-TPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDIL 124
+ EPK +WE N + +E + KPKF + D PY +G +H+GH L DI+
Sbjct: 20 LPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGN-IHIGHALNKILKDII 78
Query: 125 ARLKRMQGYNVLHPMGWDAFGLPAEQYAIET---GTHPKITT--------------LRNI 167
R K MQGY+V + GWD GLP E +E I + L +
Sbjct: 79 VRYKTMQGYDVPYVPGWDCHGLPIE-LKVEKKLGIGKKDIESFGVEEFREKCREFALEQV 137
Query: 168 NRFRTQLKSLGFSYDWNREISTIEPAY--YKWTQWIFLQLLKRGLAYQAEVPVNWCPALG 225
+ + Q K LG DW T++P+Y W W F +L ++GL Y+ PV W P
Sbjct: 138 DEQKEQFKRLGVWGDWENPYKTMDPSYEESVW--WAFKELYEKGLLYRGYKPVPWSPRCE 195
Query: 226 TVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPES----VKEMQ 281
T LA EV EY D + VK
Sbjct: 196 TALAEAEV-------------------------EYGDV-----------KDPSIYVK--- 216
Query: 282 RNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTI------------------FGAT 323
F V D +G + + + ++TT P T+
Sbjct: 217 -------------FPVKD-EGLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGE 262
Query: 324 YLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRK-SDLERTELQKEKTGVFSGCYARNPAS 382
L++A L+ S+ +E+Y+ L + K S+LE +P
Sbjct: 263 KLILAKA--LVESVAKKA---GVEDYEVLETFKGSELEGLR-------------YEHPFY 304
Query: 383 GE----AIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQS 438
A P+ + D+V GTG + P H D+E K+ + V+ P D+
Sbjct: 305 DFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYG--LLEVLNPVDD----- 357
Query: 439 EKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGN----------------G 482
YT E GL ++A K+IE ++ GN
Sbjct: 358 NGRYTEE-----------APKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRT 406
Query: 483 KKKVNY-----------KLRD-----------------------------WLFARQRYWG 502
K + Y KLRD W +RQRYWG
Sbjct: 407 KTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVPDWGKNRFGNMVENRPDWCISRQRYWG 466
Query: 503 EPIPVVFLDGTGETVPLHE 521
PIPV + TGE + + E
Sbjct: 467 VPIPVWYCKETGEILVITE 485
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and
cytosolic family. The leucyl-tRNA synthetases belong to
two families so broadly different that they are
represented by separate models. This model includes both
archaeal and cytosolic eukaryotic leucyl-tRNA
synthetases; the eubacterial and mitochondrial forms
differ so substantially that some other tRNA ligases
score higher by this model than does any eubacterial
LeuS [Protein synthesis, tRNA aminoacylation].
Length = 938
Score = 133 bits (337), Expect = 9e-33
Identities = 99/375 (26%), Positives = 151/375 (40%), Gaps = 90/375 (24%)
Query: 68 EIEPKWQSYWENNRTFRT-PDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILAR 126
IE KWQ WE F PD+ + KF++ +PY +G +H GH +T ++ AR
Sbjct: 2 AIEKKWQKRWEEAHIFEADPDD----REKFFLTMAYPYLNGV-MHAGHCRTFTIPEVSAR 56
Query: 127 LKRMQGYNVLHPMGWDAFGLP----AEQYAIETGTHPKITT------LRNINRF------ 170
+RM+G NVL P+G+ G P AE K T + +F
Sbjct: 57 FERMKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYI 116
Query: 171 --------RTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCP 222
+ KS+G+S DW R T +P Y ++ +W +L + GL + E PV +CP
Sbjct: 117 VEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKGEHPVRYCP 176
Query: 223 ALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQR 282
+ G+PV E D L E V ++
Sbjct: 177 -----------------KDGNPV-------------EDHDLLSG--------EGVTIVE- 197
Query: 283 NWIGRSEGAEMDFRVLDSDGQERDIKITVYTT-RPDTIFGATYLVVAPEHPLLSSLVSTT 341
+I + F + D V T RP+T++G T V P + +
Sbjct: 198 -YIL------IKFELEDGA------FYFVAATLRPETVYGVTNCWVNPTITYV--IAEVG 242
Query: 342 QSQNI---EEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSY 398
+ I E ++NL+ +K + E + F G NP G +PI A++V +
Sbjct: 243 GEKWITSKEAFENLSYQKLKYKPIE--EVPGKQFIGKKVHNPVVGPEVPILPAEFVDTTK 300
Query: 399 GTGAIMAVPAHDTRD 413
GTG +M+VPAH D
Sbjct: 301 GTGVVMSVPAHAPDD 315
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and
mitochondrial forms [Protein synthesis, tRNA
aminoacylation].
Length = 861
Score = 131 bits (332), Expect = 5e-32
Identities = 124/531 (23%), Positives = 191/531 (35%), Gaps = 134/531 (25%)
Query: 66 FHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILA 125
+ E K ++W+ N F +++ KP+F D PY +G+ +H+GH L DI+
Sbjct: 8 LSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGS-IHLGHALNKILKDIIL 66
Query: 126 RLKRMQGYNVLHPMGWDAFGLPAEQ-----------YAIETGTHPKIT------TLRNIN 168
R K MQG+NV GWD GLP E I + + L+ I
Sbjct: 67 RYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIE 126
Query: 169 RFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVL 228
R Q + LG DW T++P+Y + W+F + ++GL Y+ PV W P T L
Sbjct: 127 EQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCRTAL 186
Query: 229 ANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRS 288
A EV EY E+ K++ +
Sbjct: 187 AEAEV-------------------------EY-------------KENYKDV------KD 202
Query: 289 EGAEMDFRVLDSDGQERDIKIT---VYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQN 345
+ F V +K++ ++TT P T+ + V P+ + Q
Sbjct: 203 PSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNLAIAVHPD---FEYAL--VQDNT 257
Query: 346 IEEYKNLAS-------RKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWV-------A 391
EY LA K+ + ++ K G +P +
Sbjct: 258 KVEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGG 317
Query: 392 DYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKA---------Y 442
D+V GTG + P H D+E K+ + + + P DE +E
Sbjct: 318 DHVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEV---LSPVDEKGVYTEGVNDFQGRFVKD 374
Query: 443 TGEGLIVNSSNLISGLDINGL------------SCQEATSKVI-----EWAEKTGNGK-- 483
+ +I + +I L GL C + VI +W KT + K
Sbjct: 375 ADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKDIKDQ 434
Query: 484 -----KKVNYK--------------LRDWLFARQRYWGEPIPVVFLDGTGE 515
KKVN+ DW +RQRYWG PIP+ + + TGE
Sbjct: 435 MLEQIKKVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPIWYCEDTGE 485
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain
is followed by an EMAP domain. In this case, MetRS
functions as a homodimer. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. As a result of a deletion event, MetRS has a
significantly shorter core domain insertion than IleRS,
ValRS, and LeuR. Consequently, the MetRS insertion
lacks the editing function.
Length = 319
Score = 109 bits (276), Expect = 2e-26
Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 22/194 (11%)
Query: 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIE 154
K + PY +G H+GH G D+ AR +R++GY+VL G D G EQ A E
Sbjct: 1 KVLITTALPYVNGV-PHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE 59
Query: 155 TGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214
G P+ + F+ K L S+D I T P + + Q F +L + G Y+
Sbjct: 60 EGVTPQELCDKYHEIFKDLFKWLNISFD--YFIRTTSPRHKEIVQEFFKKLYENGYIYEG 117
Query: 215 EVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLD---DL 271
E +C + L P R+ + +++++ DRLL+ L+ D
Sbjct: 118 EYEGLYCVSCERFL---------------PEWREE-EHYFFRLSKFQDRLLEWLEKNPDF 161
Query: 272 DWPESVKEMQRNWI 285
WPE+ + +W+
Sbjct: 162 IWPENARNEVLSWL 175
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 113 bits (286), Expect = 2e-26
Identities = 108/413 (26%), Positives = 159/413 (38%), Gaps = 112/413 (27%)
Query: 45 CSVNEIEEQKQKQQV--VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKP--KFYVLD 100
+++ E++ +K+ + + +Y E+E W +WE + F+ P E S K +V+
Sbjct: 7 IKLSKDEKKNKKRNISSMAASYDPKEVESGWYEWWEKSGFFK-PAEDAKSLNSGKKFVI- 64
Query: 101 MFPYPSGAG-LHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHP 159
+ P P+ G LH+GH L D L R RM+G L G D G+ A Q +E
Sbjct: 65 VLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGI-ATQVVVEKKLMK 123
Query: 160 KITTLR---------------------NINRFRTQLKSLGFSYDWNREISTIEPAYYKWT 198
+ R NI QL+ LG S DW+RE+ T++ K
Sbjct: 124 EENKTRHDLGREEFLKKVWEWKDKHGNNICN---QLRRLGSSLDWSREVFTMDEQRSKAV 180
Query: 199 QWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKIT 258
+ F++L + GL Y+ VNWC L T +++ EV I KP + I
Sbjct: 181 KEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVE--------FEEIEKPT---KITIP 229
Query: 259 EYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDT 318
Y + E+ W + + DS +I V TTR +T
Sbjct: 230 GY--------------DKKVEVGVLW-------HFAYPLEDSG----QEEIVVATTRIET 264
Query: 319 IFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYAR 378
+ G + V HP E YK L G
Sbjct: 265 MLGDVAVAV---HP------------KDERYKKLH--------------------GKELI 289
Query: 379 NP-ASGEAIPIWVAD--YVLGSYGTGAIMAVPAHDTRDHEFA----LKFDISI 424
+P IPI +AD V +GTGA+ PAHD D+E A L F I+I
Sbjct: 290 HPFIPDRKIPI-IADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPF-INI 340
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 113 bits (285), Expect = 3e-26
Identities = 101/391 (25%), Positives = 150/391 (38%), Gaps = 113/391 (28%)
Query: 62 RAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAG-LHVGHPLGYTA 120
+ Y E+E +W +W+ F DE D ++P F ++ P P+ G LH+GH L T
Sbjct: 17 KGYEHREVEARWYPFWQERGYFHG-DEHDRTRPPFSIV--LPPPNVTGSLHLGHALTATL 73
Query: 121 TDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNI------------- 167
D+L R KRM G+N L G D G+ A Q +E R+
Sbjct: 74 QDVLIRWKRMSGFNTLWLPGTDHAGI-ATQMIVEKELKKTEKKSRHDLGREAFLERVWAW 132
Query: 168 -----NRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCP 222
+R Q K+LG S DW RE T++ + + +F++L + GL Y+ + +NWCP
Sbjct: 133 KEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCP 192
Query: 223 ALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQR 282
T L++ EV + +G P
Sbjct: 193 DCRTALSDLEVEHEEAHQGELWSFAYP--------------------------------- 219
Query: 283 NWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQ 342
+ D G+ I V TTRP+T+ G T + V P P
Sbjct: 220 --------------LADGSGE-----IVVATTRPETMLGDTAVAVHPLDP---------- 250
Query: 343 SQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVL--GSYGT 400
Y L +K R+P +G PI VAD +L +GT
Sbjct: 251 -----RYMALHGKK--------------------VRHPITGRTFPI-VADAILVDPKFGT 284
Query: 401 GAIMAVPAHDTRDHEFALKFDISIHSVVMPD 431
GA+ PAHD D E + + + +V+ PD
Sbjct: 285 GAVKVTPAHDFNDFEVGKRHGLEMITVIGPD 315
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 110 bits (278), Expect = 1e-25
Identities = 54/228 (23%), Positives = 87/228 (38%), Gaps = 35/228 (15%)
Query: 90 DTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAE 149
K V PYP+G H+GH Y A D+ AR R++GY V G D G E
Sbjct: 1 MKMMKKILVTTALPYPNGP-PHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIE 59
Query: 150 QYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 209
A + G P+ +N F+ K+L S+D I T P + + Q FL+L + G
Sbjct: 60 LKAEKEGITPQELVDKNHEEFKELFKALNISFD--NFIRTTSPEHKELVQEFFLKLYENG 117
Query: 210 LAYQAEVPVNWCP-----------------------------ALGTVLANEEVVDGVSER 240
Y E +C G L E+++ V
Sbjct: 118 DIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPVCVI 177
Query: 241 GGHPVIRKPMRQWMLKITEYADRLLDDLD---DLDWPESVKEMQRNWI 285
G + + +++++ D+LL+ + D WP + + N++
Sbjct: 178 SGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFL 225
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 107 bits (271), Expect = 2e-24
Identities = 70/205 (34%), Positives = 90/205 (43%), Gaps = 54/205 (26%)
Query: 63 AYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAG-LHVGHPLGYTAT 121
Y E+E KW WE F PD D SK F + + P P+ G LH+GH L T
Sbjct: 8 TYDPKEVEAKWYQKWEEKGYF-KPD--DNSKKPFSI--VIPPPNVTGSLHMGHALNNTLQ 62
Query: 122 DILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGT-HPKITT-------LR--NINRF- 170
DIL R KRMQGYN L W LP GT H I T L +R
Sbjct: 63 DILIRYKRMQGYNTL----W----LP--------GTDHAGIATQMVVERQLAAEGKSRHD 106
Query: 171 ---------------------RTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 209
QL+ LG S DW+RE T++ K + +F++L ++G
Sbjct: 107 LGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKG 166
Query: 210 LAYQAEVPVNWCPALGTVLANEEVV 234
L Y+ + VNW P L T L++ EV
Sbjct: 167 LIYRGKRLVNWDPKLQTALSDLEVE 191
Score = 45.5 bits (109), Expect = 6e-05
Identities = 34/108 (31%), Positives = 43/108 (39%), Gaps = 37/108 (34%)
Query: 309 ITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEK 368
+ V TTRP+T+ G T + V PE E YK+L +
Sbjct: 213 LVVATTRPETMLGDTAVAVNPED---------------ERYKHLIGKT------------ 245
Query: 369 TGVFSGCYARNPASGEAIPIWVAD-YVLGSYGTGAIMAVPAHDTRDHE 415
P G IPI +AD YV +GTGA+ PAHD D E
Sbjct: 246 --------VILPLVGREIPI-IADEYVDPEFGTGAVKITPAHDPNDFE 284
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 106 bits (266), Expect = 8e-24
Identities = 48/137 (35%), Positives = 66/137 (48%), Gaps = 24/137 (17%)
Query: 110 LHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLP----AEQ--------------- 150
LHVGH YT D++AR KRM+GYNVL PM + G P AE+
Sbjct: 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSL 60
Query: 151 YAIETGTHPKITTLRNI-----NRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQL 205
Y I K I + +K +G+S DW RE +T +P Y K+ +W F +L
Sbjct: 61 YGIPEEELEKFKDPEYIVEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKL 120
Query: 206 LKRGLAYQAEVPVNWCP 222
++GL + PV +CP
Sbjct: 121 KEKGLIVKGSHPVRYCP 137
Score = 59.9 bits (146), Expect = 3e-09
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 313 TTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNI---EEYKNLASRKSDLERTELQKEKT 369
T RP+TIFG T L V P+ + I E + L+ + D+E +++ K
Sbjct: 176 TLRPETIFGVTNLWVNPD--ATYVKAEVDGEKWIVSKEAAEKLSFQDRDVE--IIEEIKG 231
Query: 370 GVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALK 419
G +NP +G+ +PI AD+V GTG +M+VPAH D+ AL+
Sbjct: 232 SELIGKKVKNPVTGKEVPILPADFVDPDNGTGVVMSVPAHAPYDY-VALR 280
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
synthetases. Isoleucine amino-acyl tRNA synthetases
(IleRS) catalytic core domain . This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. IleRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids.
Length = 338
Score = 102 bits (256), Expect = 9e-24
Identities = 64/211 (30%), Positives = 89/211 (42%), Gaps = 44/211 (20%)
Query: 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAI 153
P+F D PY +G H GH L DI+ R K MQGY V GWD GLP E +
Sbjct: 1 PEFVFHDGPPYANGL-PHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIE-LKV 58
Query: 154 E-------TGTHPKITT-----------LRNINRFRTQLKSLGFSYDWNREISTIEPAYY 195
E K+ LR ++ Q + LG DW T++P Y
Sbjct: 59 EKELGISGKKDIEKMGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYM 118
Query: 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWML 255
+ W+F QL ++GL Y+ V W P+I + QW +
Sbjct: 119 ESVWWVFKQLHEKGLLYRGYKVVPW-----------------------PLIYRATPQWFI 155
Query: 256 KITEYADRLLDDLDDLDW-PESVKEMQRNWI 285
++T+ DRLL+ D ++W PE VK NW+
Sbjct: 156 RVTKIKDRLLEANDKVNWIPEWVKNRFGNWL 186
Score = 41.4 bits (98), Expect = 8e-04
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 490 LRDWLFARQRYWGEPIPVVFLDGTGETV 517
RDW +RQRYWG PIPV + + GE +
Sbjct: 189 RRDWCISRQRYWGTPIPVWYCEDCGEVL 216
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 103 bits (258), Expect = 9e-24
Identities = 49/221 (22%), Positives = 85/221 (38%), Gaps = 34/221 (15%)
Query: 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIET 155
F + PY +G H+GH D+ AR R++GY+VL G D G E A +
Sbjct: 1 FLITTALPYVNGP-PHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKE 59
Query: 156 GTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAE 215
G P+ R F+ K S+D I T + + Q FL+L ++G Y+ E
Sbjct: 60 GVTPQELVDRYHEEFKELFKKFNISFD--DFIRTTSERHKELVQEFFLKLYEKGDIYEGE 117
Query: 216 VPVNWCPALGTVLANEEVV-----------------------------DGVSERGGHPVI 246
+C + L + V + S G
Sbjct: 118 YEGWYCVSDERFLPDRYVEGTCPYCGSEDARGDQCEVCGRPLEPTELINPRSAISGSTPE 177
Query: 247 RKPMRQWMLKITEYADRLLDDLDD--LDWPESVKEMQRNWI 285
K + +++++ D+LL+ + + + P +V E+ +W+
Sbjct: 178 LKEEEHYFFRLSKFQDKLLEWIKENPDEPPSNVNEVVLSWL 218
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 102 bits (258), Expect = 9e-23
Identities = 57/206 (27%), Positives = 80/206 (38%), Gaps = 34/206 (16%)
Query: 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYT 119
V F +E + +W+ N F E P+F D P +G H GH L T
Sbjct: 7 VDSQPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGL-PHYGHLLTRT 65
Query: 120 ATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPK---ITT------------- 163
D++ R K M+GY V GWD GLP E +E K I+
Sbjct: 66 IKDVVPRYKTMKGYKVERRAGWDTHGLPVE-LEVE-----KELGISGKKDIEEYGIEKFN 119
Query: 164 -------LRNINRFRTQLKSLGFSYDWNREISTIEPAY--YKWTQWIFLQLLKRGLAYQA 214
LR + + + LG D++ T++ Y W W QL +GL Y+
Sbjct: 120 EKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVW--WALKQLYDKGLLYKG 177
Query: 215 EVPVNWCPALGTVLANEEVVDGVSER 240
V +CP T L+N EV G +
Sbjct: 178 YRVVPYCPRCETPLSNHEVAQGYKDV 203
Score = 42.8 bits (102), Expect = 5e-04
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 23/83 (27%)
Query: 229 ANEEVVDGVSERG------------GH------PVIRKPMRQWMLKITEYADRLLDDLDD 270
A++E++ + ERG H P+I W +++T+ DR+L+
Sbjct: 364 ADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQK 423
Query: 271 LDW-PESVKEMQ-RNWIGRSEGA 291
++W PE +K+ + W+ E A
Sbjct: 424 INWYPEHIKDGRFGKWL---ENA 443
Score = 39.0 bits (92), Expect = 0.008
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 490 LRDWLFARQRYWGEPIPV 507
RDW +R RYWG P+P+
Sbjct: 443 ARDWNISRNRYWGTPLPI 460
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 93.8 bits (234), Expect = 3e-20
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 5/174 (2%)
Query: 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIE 154
KFY+ YP+G H+GH A D+LAR KR++GY+V G D G ++ A E
Sbjct: 2 KFYITTPIYYPNGK-PHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEE 60
Query: 155 TGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214
G P+ RN F+ ++L SYD I T +P + + Q IF +LL G Y
Sbjct: 61 AGISPQELADRNSAAFKRLWEALNISYD--DFIRTTDPRHKEAVQEIFQRLLANGDIYLG 118
Query: 215 EVPVNWCPALGTVLANEEVVDG--VSERGGHPVIRKPMRQWMLKITEYADRLLD 266
+ +C E+++ G PV + ++++Y D+LL+
Sbjct: 119 KYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEESYFFRLSKYQDKLLE 172
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 93.6 bits (234), Expect = 7e-20
Identities = 103/456 (22%), Positives = 160/456 (35%), Gaps = 140/456 (30%)
Query: 70 EPKWQSYWENNRTFRTPDEIDTSKPKFYVL-DMFPYPSGAGLHVGHPLGYTATDILARLK 128
EP+ WE N ++ E + KPKF +L D PY +G +H+GH L DI+ + K
Sbjct: 25 EPEILKRWEENDLYQKIREANKGKPKF-ILHDGPPYANGD-IHIGHALNKILKDIIVKSK 82
Query: 129 RMQGYNVLHPMGWDAFGLPAEQYAIETGTHPK----ITTLRN---------INRFRTQLK 175
M G++ + GWD GLP E + R ++ R K
Sbjct: 83 TMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALEQVDIQREDFK 142
Query: 176 SLGFSYDWNREISTIEPAY----YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANE 231
LG DW+ T++ Y + ++ K+G Y+ PV WCP G+ LA
Sbjct: 143 RLGVLGDWDNPYLTMDFKYEANIIR----ALGKMAKKGYLYKGLKPVYWCPDCGSALAEA 198
Query: 232 EVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPES----VKEMQRNWIGR 287
EV EY D+ S V
Sbjct: 199 EV-------------------------EYHDK-----------TSPSIYVA--------- 213
Query: 288 SEGAEMDFRVLDSDGQER--DIKITVYTTRPDTI------------------FGATYLVV 327
F V+D D + ++TT P T+ L+V
Sbjct: 214 -------FPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIV 266
Query: 328 APEHPLLSSLVSTTQSQNIEEYKNLASRK-SDLERTELQKEKTGVFSGCYARNPASGEAI 386
A + L+ S++ E+Y+ LA+ K +LE A++P
Sbjct: 267 AKD--LVESVLERF---GWEDYEVLATFKGKELEGLV-------------AQHPFYDRDS 308
Query: 387 PIWVADYVLGSYGTGAI-MAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGE 445
P+ + D+V GTG + A P H D+ K+ + + + V D
Sbjct: 309 PVILGDHVTLDAGTGLVHTA-PGHGEDDYVVGQKYGLEVLNPVDDD-------------- 353
Query: 446 GLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGN 481
G + L +GL + +A K+IE E+ G
Sbjct: 354 GRYTEEAPLFAGLFV-----FKANPKIIEKLEEKGA 384
Score = 36.2 bits (85), Expect = 0.058
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 492 DWLFARQRYWGEPIPVVFLD-GTGETVP 518
DW +RQR WG PIP +F TGE P
Sbjct: 453 DWCISRQRTWGVPIP-IFYHKETGELHP 479
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 92.7 bits (230), Expect = 1e-19
Identities = 127/528 (24%), Positives = 197/528 (37%), Gaps = 160/528 (30%)
Query: 52 EQKQKQQVVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAG-L 110
++K+ + + Y +E W ++WE + F + +SKP F ++ P P+ G L
Sbjct: 88 QKKRLSSQMAKQYSPSAVEKSWYAWWEKSGYFGA--DAKSSKPPFVIV--LPPPNVTGAL 143
Query: 111 HVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINR- 169
H+GH L D + R KRM GYN L G D G+ A Q +E K+ R++ R
Sbjct: 144 HIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGI-ATQVVVEK----KLMRERHLTRH 198
Query: 170 ---------------------FRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKR 208
QL+ LG S DW+RE T++ K F++L K
Sbjct: 199 DIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKE 258
Query: 209 GLAYQAEVPVNWCPALGTVLANEEV--VDGVSERGGHPVIRKPMRQWMLKITEYADRLLD 266
GL Y+ VNW L T +++ EV +D + ER +LK+ Y
Sbjct: 259 GLIYRDIRLVNWDCTLRTAISDVEVDYID-IKERT------------LLKVPGYDK---- 301
Query: 267 DLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQ--ERDI-KITVYTTRPDTIFGAT 323
++F VL S E + +I V TTR +T+ G T
Sbjct: 302 -------------------------PVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGDT 336
Query: 324 YLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASG 383
+ + P+ E YK+L + +A +P +G
Sbjct: 337 AIAIHPDD---------------ERYKHLHGK--------------------FAVHPFNG 361
Query: 384 EAIPIWVADYVL--GSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKA 441
+PI + D +L ++GTGA+ PAHD D E + ++ ++ D + +S
Sbjct: 362 RKLPI-ICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSE 420
Query: 442 YTGEGLIVNSSNLISGLDING-----------LSCQEATSKVIE------W--------- 475
+ G +I L G L T+ V+E W
Sbjct: 421 FAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAK 480
Query: 476 ----AEKTGNGKK--------KVNYK-----LRDWLFARQRYWGEPIP 506
A G KK +K +RDW +RQ +WG IP
Sbjct: 481 QALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIP 528
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 89.4 bits (222), Expect = 1e-18
Identities = 119/538 (22%), Positives = 183/538 (34%), Gaps = 133/538 (24%)
Query: 70 EPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKR 129
EP+ Q WE N+ ++ + + + F + D PY +G LH+GH L D + R +
Sbjct: 9 EPEIQKLWEENQVYKRVSDRNNGES-FTLHDGPPYANG-DLHIGHALNKILKDFINRYQL 66
Query: 130 MQGYNVLHPMGWDAFGLPAE--------QYAIETGTHPKIT------TLRNINRFRTQLK 175
+QG V + GWD GLP E Q A + T K+ + ++ R K
Sbjct: 67 LQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKTVDTQRESFK 126
Query: 176 SLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVD 235
G DW T++P Y +F Q+ G Y+ PV+W P+ T LA E+
Sbjct: 127 RYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALAEAEL-- 184
Query: 236 GVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDF 295
E GH + K + Y + + PE ++E
Sbjct: 185 EYPE--GH--VSKSI---------YVAFPVVSPSETS-PEELEEFLPG------------ 218
Query: 296 RVLDSDGQERDIKITVYTTRPDTIFG---------ATYLVVAPEHPLLSSLVSTTQSQNI 346
+ + ++TT P T+ Y VV + S +
Sbjct: 219 -----------LSLAIWTTTPWTMPANAAVAVNDKLQYSVVEVQSFSEDESTSGGNKKKR 267
Query: 347 EEYKNLASRKSDL-----------ERTELQKEKTGVFSG-----CYARNPASGEAIPIWV 390
+K L + ++ F G C +P P+ +
Sbjct: 268 PGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPLYNRESPVVI 327
Query: 391 A-DYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSE------KAYT 443
DY+ GTG + P H D+ LK+ + + S V DD E +
Sbjct: 328 GGDYITTESGTGLVHTAPGHGQEDYITGLKYGLPLLSPV--DDAGKFTEEAGQFSGLSVL 385
Query: 444 GEGLIVNSSNLISGLDINGLSCQE--------------------ATS------------- 470
GEG N++ ++ LD G E AT
Sbjct: 386 GEG---NAA-VVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASVEGFRQAA 441
Query: 471 ----KVIEWAEKTGNGKKKVNYKLR-DWLFARQRYWGEPIPVVFLDGTGETVPLHEAE 523
++W G + + R DW +RQR WG PIPV + T E PL E
Sbjct: 442 LDAIDKVKWIPAQGENRIRAMVSGRSDWCISRQRTWGVPIPVFYHVETKE--PLMNEE 497
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 88.0 bits (219), Expect = 3e-18
Identities = 53/225 (23%), Positives = 90/225 (40%), Gaps = 34/225 (15%)
Query: 92 SKPKFYVLDMFPYPSGAGLHVGHPLG-YTATDILARLKRMQGYNVLHPMGWDAFGLPAEQ 150
+ + +PY +G LH+GH G D+ AR +R++G VL G D G P E
Sbjct: 1 MMMRILITSAWPYANGP-LHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIEL 59
Query: 151 YAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGL 210
A + G P+ + + K LG SYD T P +++ Q FL+L + G
Sbjct: 60 AAKKEGVTPQELADKYHEEHKEDFKKLGISYDLF--TRTTSPNHHEVVQEFFLKLYENGY 117
Query: 211 AYQAEVPVNWCPALGTVLAN-----------------------------EEVVDGVSERG 241
Y+ + +CP+ G L + ++++ S+
Sbjct: 118 IYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGALLDPTDLINPRSKIS 177
Query: 242 GHPVIRKPMRQWMLKITEYADRLLDDLDD-LDWPESVKEMQRNWI 285
G + + L + +A+RL ++ DWP +V NW+
Sbjct: 178 GSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNWL 222
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
This model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain [Protein synthesis, tRNA aminoacylation].
Length = 530
Score = 84.0 bits (208), Expect = 4e-17
Identities = 52/225 (23%), Positives = 83/225 (36%), Gaps = 38/225 (16%)
Query: 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIET 155
+ PY +G H+GH D+ AR KR++GY VL G D G E A +
Sbjct: 1 ILITTALPYANGK-PHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQE 59
Query: 156 GTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAE 215
G PK + F+ K L S+D R I T + + + Q IF +L + G Y+ E
Sbjct: 60 GLTPKELVDKYHEEFKDDWKWLNISFD--RFIRTTDEEHKEIVQKIFQKLKENGYIYEKE 117
Query: 216 VPVNWCPALGTVLANEEVVD------GVSERGGH------------------------PV 245
+ +CP L + V RG H P
Sbjct: 118 IKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEPTELINPRCKICGAKPE 177
Query: 246 IRKPMRQWMLKITEYADRLLD----DLDDLDWPESVKEMQRNWIG 286
+R + +++ + L + + + +VK +NW+
Sbjct: 178 LRD-SEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLK 221
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 81.5 bits (201), Expect = 4e-16
Identities = 122/505 (24%), Positives = 184/505 (36%), Gaps = 162/505 (32%)
Query: 70 EPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKR 129
E + ++WE+ F+ P+ P +V+ M P LH+GH + T DI+ R R
Sbjct: 66 EERIYNWWESQGYFK-PNFDRGGDP--FVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNR 122
Query: 130 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINR-------------------- 169
M+G L G D G+ A Q +E K+ I R
Sbjct: 123 MKGRPTLWIPGTDHAGI-ATQLVVE-----KMLASEGIKRTDLGRDEFTKRVWEWKEKYG 176
Query: 170 --FRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTV 227
Q+K LG S DW+RE T++ + F++L ++GL YQ VNW P L T
Sbjct: 177 GTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTA 236
Query: 228 LANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGR 287
+++ EV EY++ P ++ ++ R
Sbjct: 237 VSDLEV-------------------------EYSEE----------PGTLYYIKY----R 257
Query: 288 SEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIE 347
G DF +T+ TTRP+T+FG + V PE S +
Sbjct: 258 VAGGSEDF-------------LTIATTRPETLFGDVAIAVNPEDDRYSKYIG-------- 296
Query: 348 EYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVP 407
K + Y R+ +PI YV +GTG + P
Sbjct: 297 --------------------KMAIVPMTYGRH------VPIIADRYVDKDFGTGVLKISP 330
Query: 408 AHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQ- 466
HD D+ A K + I + VM D + ++ Y E L S L+ GL+ +
Sbjct: 331 GHDHNDYLLARKLGLPILN-VMNKDGTLNEVAGLYWFEA----REKLWSDLEETGLAVKK 385
Query: 467 ----------EATSKVIE------W-------AEKT----GNGK---------KKVNYKL 490
+ +VIE W AEK NG+ K N+ L
Sbjct: 386 EPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGELTIIPERFEKIYNHWL 445
Query: 491 ---RDWLFARQRYWGEPIPVVFLDG 512
+DW +RQ +WG IPV ++ G
Sbjct: 446 SNIKDWCISRQLWWGHRIPVWYIVG 470
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 81.5 bits (202), Expect = 5e-16
Identities = 107/489 (21%), Positives = 160/489 (32%), Gaps = 129/489 (26%)
Query: 70 EPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKR 129
EP+ Q+ WE ++ E +PKF + D PY +G +H+GH L D++ R K+
Sbjct: 30 EPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGN-IHIGHALNKILKDVIVRSKQ 88
Query: 130 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRN--INRFR---------------T 172
M G++ + GWD GLP E IE K + FR
Sbjct: 89 MLGFDANYVPGWDCHGLPIEW-KIEEKYRAKGKNKDEVPVAEFRKECREYALSWIDVQRE 147
Query: 173 QLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEE 232
+ K LG DW+ +T++ F + +G Y+ PV W T LA E
Sbjct: 148 EFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAE 207
Query: 233 VVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAE 292
+ EY D D + W VK
Sbjct: 208 I-------------------------EYHDIESDTI----W---VK-------------- 221
Query: 293 MDFRVLDSDGQER-DIKITVYTTRPDTI-------FGA--TYLVVAPEHP---------- 332
F V D G + ++TT P TI + Y +
Sbjct: 222 --FPVKDGKGILDSGTYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDFWAKPGE 279
Query: 333 ---LLSSLVSTTQSQ-NIEEYKNLASRK-SDLERTELQKEKTGVFSGCYARNPASGEAIP 387
+ +L + + +E ++ LA K DLE+ + +P
Sbjct: 280 RLVVADALAESVAKKAGVESFERLADVKGEDLEKIVC--------AHPLDGLDGYEFEVP 331
Query: 388 IWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGL 447
+ D+V GTG + P H D +K+ + + DE +E A G
Sbjct: 332 VLDGDHVTDDAGTGFVHTAPGHGREDFNVWMKY--GRTEIPVTVDEDGFYTENAPGFGGA 389
Query: 448 IVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQR----Y--- 500
V +D G +A VIE + G L AR R Y
Sbjct: 390 RV--------IDDEGKKYGDANKAVIEKLIEAGL------------LLARGRLKHSYPHS 429
Query: 501 WGEPIPVVF 509
W PV+F
Sbjct: 430 WRSKKPVIF 438
Score = 37.2 bits (87), Expect = 0.027
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 492 DWLFARQRYWGEPIPVVFLDGTGETVPLHEAEL 524
DW+ +RQR WG PIP +F+ GE L + E+
Sbjct: 489 DWVISRQRAWGVPIP-IFVAEDGE--ILMDEEV 518
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 66.7 bits (164), Expect = 1e-11
Identities = 66/202 (32%), Positives = 94/202 (46%), Gaps = 12/202 (5%)
Query: 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYT--ATDILARLKRMQGYNVLHPMGWDAFGLPA 148
K FY+ YP+G H+GH YT A D LAR KR+QGY+V G D G
Sbjct: 1 MMKKTFYITTPIYYPNGK-PHIGH--AYTTIAADALARYKRLQGYDVFFLTGTDEHGQKI 57
Query: 149 EQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKR 208
+Q A + G P+ F+ K L SYD + I T + + K Q IF +L ++
Sbjct: 58 QQAAEKAGKTPQEYVDEISAGFKELWKKLDISYD--KFIRTTDERHKKVVQKIFEKLYEQ 115
Query: 209 GLAYQAEVPVNWCPALGTVLANEEVVD-GVSERGGHPVIRKPMRQWMLKITEYADRLLDD 267
G Y+ E +C + T ++VD G G V + ++++Y DRLL+
Sbjct: 116 GDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKEESYFFRMSKYQDRLLEY 175
Query: 268 LD---DLDWPESVK-EMQRNWI 285
+ D PES K EM N+I
Sbjct: 176 YEENPDFIQPESRKNEMINNFI 197
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 63.2 bits (155), Expect = 2e-10
Identities = 47/236 (19%), Positives = 82/236 (34%), Gaps = 48/236 (20%)
Query: 103 PYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKIT 162
PY +G +H+GH + Y DI R +RM+G+ VL DA G P A + G P+
Sbjct: 11 PYANGP-IHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEEL 69
Query: 163 TLRNINRFRTQLKSLGFSYD-WNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWC 221
R + G S+D + T + Q I+L+L + G Y+ + +
Sbjct: 70 IARYHAEHKRDFAGFGISFDNYGS---THSEENRELAQEIYLKLKENGYIYEKTIEQLYD 126
Query: 222 P-----------------------------ALGTVLANEEVVDGVSERGGHPVIRKPMRQ 252
P G + E+++ S G + K
Sbjct: 127 PEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATYSPTELINPKSAISGATPVLKESEH 186
Query: 253 WMLKITEYADRLLDDLD-DLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDI 307
+ K+ + + L + + + +V + W L+ Q+ DI
Sbjct: 187 FFFKLPRFEEFLKEWITRSGELQPNVANKMKEW-------------LEEGLQDWDI 229
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 62.4 bits (152), Expect = 4e-10
Identities = 50/199 (25%), Positives = 82/199 (41%), Gaps = 38/199 (19%)
Query: 62 RAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTAT 121
+ + F + E K S W F+T + P++ D P+ +G H GH L T
Sbjct: 6 KDFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLP-HYGHILAGTIK 64
Query: 122 DILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLG--- 178
DI+ R + M G++V GWD GLP E +I I R R + +G
Sbjct: 65 DIVTRYQSMTGHHVTRRFGWDCHGLPVEY---------EIDKKLGIKR-RDDVLKMGIDK 114
Query: 179 -----------FSYDWNREIS-------------TIEPAYYKWTQWIFLQLLKRGLAYQA 214
+S +W + ++ T++P + + W+F QL ++GL Y+
Sbjct: 115 YNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKG 174
Query: 215 EVPVNWCPALGTVLANEEV 233
+ + A T L+N E
Sbjct: 175 FKVMPYSTACKTPLSNFEA 193
Score = 35.5 bits (82), Expect = 0.098
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 491 RDWLFARQRYWGEPIPV 507
RDW +R R+WG P+P+
Sbjct: 465 RDWAVSRSRFWGTPLPI 481
Score = 30.5 bits (69), Expect = 3.3
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 240 RGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW-PESVKEMQ-RNWI 285
R P+I + + W +K+ E DRLL++ W P+ VKE + NW+
Sbjct: 414 RSDTPLIYRAVPSWFVKVEEIKDRLLENNKQTYWVPDYVKEKRFHNWL 461
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional.
Length = 1205
Score = 57.3 bits (138), Expect = 2e-08
Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 20/165 (12%)
Query: 68 EIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARL 127
E E K YW++ F T +++ +K + D P+ +G H GH L D + R
Sbjct: 76 EEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLP-HYGHLLAGIIKDCVTRY 134
Query: 128 KRMQGYNVLHPMGWDAFGLPAEQYAIE-------------TGTHPKITTLRNI-----NR 169
G++V GWD GLP E Y IE G R I N
Sbjct: 135 FYQCGFSVERKFGWDCHGLPIE-YEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNE 193
Query: 170 FRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214
+ ++ +G D+ + T++ + + W+F +L K Y++
Sbjct: 194 WVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKS 238
Score = 35.7 bits (82), Expect = 0.075
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 491 RDWLFARQRYWGEPIPVVFLDGTGETV 517
+DW +R RYWG PIP ++ D ETV
Sbjct: 569 KDWCISRNRYWGTPIP-IWADEKMETV 594
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 55.8 bits (135), Expect = 5e-08
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 68 EIEPKWQSYWENNRTFRT--PDEIDTSKPKFYVLDMFPYPSGAG-LHVGHPLGYTATDIL 124
EIE Q +WE + F DE KF+ FPYP G LH+GH + +
Sbjct: 17 EIEVAVQKWWEEEKVFEAEAGDEPPKPGEKFFG--NFPYPYMNGLLHLGHAFSLSKLEFA 74
Query: 125 ARLKRMQGYNVLHPMGWDAFGLP 147
A R++G NVL P + G+P
Sbjct: 75 AAYHRLRGANVLLPFAFHCTGMP 97
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase.
Length = 616
Score = 38.5 bits (89), Expect = 0.009
Identities = 36/164 (21%), Positives = 62/164 (37%), Gaps = 5/164 (3%)
Query: 61 KRAYPFHEIEPKWQSYWENNRTF---RTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLG 117
+ + F + P + + R + E + +VL Y A H+G
Sbjct: 32 RNCFRFSKKLPYYSQFSSGKRALYCTSSSQESTVDEADTFVLTTPLYYVNAPPHMGSAYT 91
Query: 118 YTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSL 177
A D +AR +R+ G V+ G D G A G +P +RT K L
Sbjct: 92 TIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKDL 151
Query: 178 GFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWC 221
+YD + I T +P + + + ++ G Y+A+ +C
Sbjct: 152 DIAYD--KFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYC 193
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 37.8 bits (88), Expect = 0.016
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Query: 111 HVGHPLGYT-ATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINR 169
H+G+ +G + D+ AR R++GYN ++ G D +G E A+E PK +
Sbjct: 33 HLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAI 92
Query: 170 FRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLA 229
+ S+D ST P + Q IF +L++ + + +C LA
Sbjct: 93 HKEVYDWFDISFDKFGRTST--PQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLA 150
Query: 230 NEEV 233
+ V
Sbjct: 151 DRLV 154
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 35.1 bits (81), Expect = 0.028
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 103 PYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKIT 162
P+G LH+GH D LA+ R GY V D G A + G + K
Sbjct: 6 ITPNGY-LHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAF 64
Query: 163 TLRNINRFRTQL 174
R I R + +
Sbjct: 65 VERWIERIKEDV 76
>gnl|CDD|226893 COG4496, COG4496, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 100
Score = 28.6 bits (64), Expect = 2.5
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 45 CSVNEIEEQKQKQQVVK---RAYPFHEIE 70
C++NEI+ Q+ QV K + +IE
Sbjct: 35 CTINEIQSLAQRLQVAKMLKEGRTYRDIE 63
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 30.3 bits (69), Expect = 2.9
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 8/30 (26%)
Query: 110 LHVGHP----LGYTATDILARLKRMQGYNV 135
LH+GH +G D LAR+ GY+V
Sbjct: 132 LHIGHLRNAIIG----DSLARILEFLGYDV 157
>gnl|CDD|235741 PRK06205, PRK06205, acetyl-CoA acetyltransferase; Provisional.
Length = 404
Score = 30.0 bits (68), Expect = 3.7
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 105 PSGAGLHVGHPLGYTATDILA----RLKRMQGYNVLHPM 139
+G+G+ +GHP+G T ILA L+R Q L M
Sbjct: 350 VNGSGISLGHPVGATGGRILATLLRELQRRQARYGLETM 388
>gnl|CDD|131199 TIGR02144, LysX_arch, Lysine biosynthesis enzyme LysX. The family
of proteins found in this equivalog include the
characterized LysX from Thermus thermophilus which is
part of a well-organized lysine biosynthesis gene
cluster. LysX is believed to carry out an ATP-dependent
acylation of the amino group of alpha-aminoadipate in
the prokaryotic version of the fungal AAA lysine
biosynthesis pathway. No species having a sequence in
this equivalog contains the elements of the more common
diaminopimelate lysine biosythesis pathway, and none has
been shown to be a lysine auxotroph. These sequences
have mainly recieved the name of the related enzyme,
"ribosomal protein S6 modification protein RimK". RimK
has been characterized in E. coli, and acts by
ATP-dependent condensation of S6 with glutamate
residues.
Length = 280
Score = 29.7 bits (67), Expect = 3.9
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 27/127 (21%)
Query: 188 STIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIR 247
IE K + +L+L K G VP P E + ++E G+PV+
Sbjct: 80 HVIEACGDKI--FTYLKLAKAG------VPT---PRTYLAFDREAAL-KLAEALGYPVVL 127
Query: 248 KPMR-QWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDS--DGQE 304
KP+ W RL+ + D D ES+ E + +G G++ + +
Sbjct: 128 KPVIGSW--------GRLVALIRDKDELESLLEHKE-VLG---GSQHKLFYIQEYINKPG 175
Query: 305 RDIKITV 311
RDI++ V
Sbjct: 176 RDIRVFV 182
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 29.9 bits (68), Expect = 4.4
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 81 RTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLH 137
R ID K K YV Y H+GH Y D+L R R GY V +
Sbjct: 10 RQKEEFVPIDPGKVKMYVCGPTVYDY---AHIGHARTYVVFDVLRRYLRYLGYKVTY 63
>gnl|CDD|181625 PRK09051, PRK09051, beta-ketothiolase; Provisional.
Length = 394
Score = 29.5 bits (67), Expect = 5.5
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 105 PSGAGLHVGHPLGYT----ATDILARLKRMQG 132
P+G+G+ +GHP+G T L L+R+ G
Sbjct: 341 PNGSGISLGHPVGATGAIITVKALYELQRIGG 372
>gnl|CDD|234964 PRK01611, argS, arginyl-tRNA synthetase; Reviewed.
Length = 507
Score = 29.4 bits (67), Expect = 5.6
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 8/30 (26%)
Query: 110 LHVGH----PLGYTATDILARLKRMQGYNV 135
LHVGH +G D LAR+ GY+V
Sbjct: 126 LHVGHLRSAVIG----DALARILEFAGYDV 151
>gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA
synthetases. Arginyl tRNA synthetase (ArgRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. There
are at least three subgroups of ArgRS. One type contains
both characteristic class I HIGH and KMSKS motifs, which
are involved in ATP binding. The second subtype lacks
the KMSKS motif; however, it has a lysine N-terminal to
the HIGH motif, which serves as the functional
counterpart to the second lysine of the KMSKS motif. A
third group, which is found primarily in archaea and a
few bacteria, lacks both the KMSKS motif and the HIGH
loop lysine.
Length = 212
Score = 29.1 bits (66), Expect = 5.8
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 110 LHVGHPLGYTAT-DILARLKRMQGYNVL 136
LHVGH L D LAR+ GY+V
Sbjct: 15 LHVGH-LRNAIIGDSLARILEFLGYDVT 41
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding.
Length = 213
Score = 28.7 bits (65), Expect = 6.6
Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Query: 79 NNRTFRTPDEIDTSKP---KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNV 135
N T R +E P YV Y H+GH Y D+L R GY V
Sbjct: 4 NTLT-RQKEEFVPLNPGLVTMYVCGPTVYDY---AHIGHARTYVVFDVLRRYLEDLGYKV 59
Query: 136 LHPM 139
+
Sbjct: 60 RYVQ 63
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like
protein; Provisional.
Length = 438
Score = 29.4 bits (66), Expect = 6.8
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 12/39 (30%)
Query: 523 ELPLTLPELDD------------FTPTGTGEPPLSKAVS 549
ELPLT PEL D + P GTG+ L+KAV+
Sbjct: 200 ELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVA 238
>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 28.5 bits (64), Expect = 9.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 110 LHVGHPLGYTATDILARLKRMQGYNV 135
H+GH A D+L R + GY+V
Sbjct: 23 SHIGHARSAVAFDVLRRYLQALGYDV 48
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.414
Gapped
Lambda K H
0.267 0.0849 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,988,058
Number of extensions: 2954025
Number of successful extensions: 2870
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2760
Number of HSP's successfully gapped: 101
Length of query: 577
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 475
Effective length of database: 6,413,494
Effective search space: 3046409650
Effective search space used: 3046409650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.4 bits)