RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 008100
(577 letters)
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 913 bits (2361), Expect = 0.0
Identities = 261/517 (50%), Positives = 334/517 (64%), Gaps = 17/517 (3%)
Query: 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDI 123
Y H IE KWQ +WE + ++ + K YVL MFPYPSG LH+GH YT D+
Sbjct: 4 YNPHAIEAKWQRFWEEKGFMKAK-DLPGGRGKQYVLVMFPYPSG-DLHMGHLKNYTMGDV 61
Query: 124 LARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDW 183
LAR +RMQGY VLHPMGWDAFGLPAE A++ G HPK T NI + + L+ +G YDW
Sbjct: 62 LARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDW 121
Query: 184 NREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSER-GG 242
+RE++T EP YY+W QWIFL++ ++GLAY+A+ VNWCP TVLANE+VV+G R
Sbjct: 122 DREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHED 181
Query: 243 HPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDG 302
PV ++ + QW L+IT YA+RLL DL+ L+WPE VK MQR WIGRSEGAE+ F V +
Sbjct: 182 TPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKEV 241
Query: 303 QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERT 362
+I V+TTRPDT+FGAT+LV+APEHPL L + + + + Y A RK+++ER
Sbjct: 242 -----RIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQ 296
Query: 363 ELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDI 422
+EKTGVF G YA NPA+GE IPIW ADYVL YGTGAIMAVPAHD RD+EFA KF +
Sbjct: 297 AEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGL 356
Query: 423 SIHSVVMPDDESSSQ-SEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGN 481
I V+ E + E+AY G++VNS +G +E KVI W E+ G
Sbjct: 357 PIKKVIERPGEPLPEPLERAYEEPGIMVNSGPF------DGTESEEGKRKVIAWLEEKGL 410
Query: 482 GKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTP-TGTG 540
GK +V Y+LRDWL +RQRYWG PIP+V + VP+ E ELP+ LP+L D G
Sbjct: 411 GKGRVTYRLRDWLISRQRYWGTPIPMVHCE-ACGVVPVPEEELPVLLPDLKDVEDIRPKG 469
Query: 541 EPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW 577
+ PL + +TT G PA+R+T TM + S W
Sbjct: 470 KSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSW 506
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 874 bits (2261), Expect = 0.0
Identities = 237/516 (45%), Positives = 305/516 (59%), Gaps = 24/516 (4%)
Query: 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDI 123
Y EIE K Q +W+ RTF + D SK K+Y L M PYPSG LH+GH YT D+
Sbjct: 25 YRPEEIESKVQLHWDEKRTFEVTE--DESKEKYYCLSMLPYPSGR-LHMGHVRNYTIGDV 81
Query: 124 LARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDW 183
+AR +RM G NVL P+GWDAFGLPAE A++ T P T NI + QLK LGF YDW
Sbjct: 82 IARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYDW 141
Query: 184 NREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGH 243
+RE++T P YY+W Q F +L K+GL Y+ VNWCP TVLANE+V+DG R
Sbjct: 142 SRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDT 201
Query: 244 PVIRKPMRQWMLKITEYADRLLDDLDDLD-WPESVKEMQRNWIGRSEGAEMDFRVLDSDG 302
V RK + QW +KIT YAD LL+DLD LD WP++VK MQRNWIGRSEG E+ F V D D
Sbjct: 202 KVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVNDYDN 261
Query: 303 QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERT 362
+TVYTTRPDT G TYL VA HPL + + + + E
Sbjct: 262 -----TLTVYTTRPDTFMGCTYLAVAAGHPLAQKA--AENNPELAAFIDECRNTKVAEAE 314
Query: 363 ELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDI 422
EK GV +G A +P +GE IP+W A++VL YGTGA+MAVP HD RD+EFA K+ +
Sbjct: 315 MATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGL 374
Query: 423 SIHSVVMP-DDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGN 481
+I V++ D S++A T +G++ NS NGL + A + + + G
Sbjct: 375 NIKPVILAADGSEPDLSQQALTEKGVLFNSGEF------NGLDHEAAFNAIADKLTAMGV 428
Query: 482 GKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGE 541
G++KVNY+LRDW +RQRYWG PIP+V L+ G +P + +LP+ LPE D G
Sbjct: 429 GERKVNYRLRDWGVSRQRYWGAPIPMVTLE-DGTVMPTPDDQLPVILPE--DVVMDGIT- 484
Query: 542 PPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW 577
P+ W +TT + G PA RET T + S W
Sbjct: 485 SPIKADPEWAKTTVN--GMPALRETDTFDTFMESSW 518
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 373 bits (959), Expect = e-120
Identities = 117/516 (22%), Positives = 174/516 (33%), Gaps = 122/516 (23%)
Query: 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDI 123
F IE KWQ W + F + KFY+ FPY SG LHVGH YT D+
Sbjct: 4 LNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGH-LHVGHARTYTIPDV 62
Query: 124 LARLKRMQGYNVLHPMGWDAFGLPAEQYA------------------------IETGTHP 159
+AR KRMQGYNVL PM W G P A + T P
Sbjct: 63 IARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDP 122
Query: 160 KITTLRNINRFRTQLKSLGFSYDWNREIST--IEPAYYKWTQWIFLQLLKRGLAYQAEVP 217
+ + GFS DW+RE T + P + K+ +W F +L ++G +
Sbjct: 123 INIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHR 182
Query: 218 VNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESV 277
V W P +GT L + ++++G P++ ++ E +
Sbjct: 183 VRWDPVVGTPLGDHDLMEGE----DVPILDYI--IIKFELRENGE--------------- 221
Query: 278 KEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSL 337
I + T RP+T++G T + V P + +
Sbjct: 222 ----------------------------VIYLPAATLRPETVYGVTNMWVNPNATYVKAK 253
Query: 338 VSTTQSQNIEEYKNLASRK---SDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYV 394
V + A+ K D E +++ K G Y RNP SG+ + I A++V
Sbjct: 254 VRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFV 313
Query: 395 LGSYGTGAIMAVPAHDTRDH----------EFALKFDISIHSVVMPDDESSSQSEK---- 440
TG +M+VPAH DH E K+DI V S + E
Sbjct: 314 DPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDF 373
Query: 441 --AYTGEGLIVNSSNLISGL--------------------DINGLSCQEATSKVIEWAEK 478
L + S L G QE + + +
Sbjct: 374 PAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKEMLE 433
Query: 479 TGNG-------KKKVNYKLRDWLFARQRYWGEPIPV 507
G +K V + + + + I
Sbjct: 434 KGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDY 469
Score = 29.5 bits (66), Expect = 3.4
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 224 LGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKIT--EYADRLLDDLDDLDW-PESVKEM 280
+ ++ + +S G VI+ QW + E+ ++ L+ + PE+ +
Sbjct: 436 IAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQ 495
Query: 281 QRNWI 285
I
Sbjct: 496 FEAII 500
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 360 bits (924), Expect = e-113
Identities = 116/563 (20%), Positives = 177/563 (31%), Gaps = 136/563 (24%)
Query: 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDI 123
F IE KWQ W + F + KFY+ FPY SG LHVGH YT D+
Sbjct: 4 LNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGH-LHVGHARTYTIPDV 62
Query: 124 LARLKRMQGYNVLHPMGWDAFGLPAEQYA------------------------IETGTHP 159
+AR KRMQGYNVL PM W G P A + T P
Sbjct: 63 IARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDP 122
Query: 160 KITTLRNINRFRTQLKSLGFSYDWNREISTIE--PAYYKWTQWIFLQLLKRGLAYQAEVP 217
+ + GFS DW+RE T P + K+ +W F +L ++G +
Sbjct: 123 INIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHR 182
Query: 218 VNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESV 277
V W P +GT L + ++++G ++ E +
Sbjct: 183 VRWDPVVGTPLGDHDLMEGEDVP------ILDYIIIKFELRENGE--------------- 221
Query: 278 KEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSL 337
I + T RP+T++G T + V P + +
Sbjct: 222 ----------------------------VIYLPAATLRPETVYGVTNMWVNPNATYVKAK 253
Query: 338 VSTTQSQNIEEYKNLASRK---SDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYV 394
V + A+ K D E +++ K G Y RNP SG+ + I A++V
Sbjct: 254 VRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFV 313
Query: 395 LGSYGTGAIMAVPAHDTRDH----------EFALKFDISIHSVV---------------- 428
TG +M+VPAH DH E K+DI V
Sbjct: 314 DPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDF 373
Query: 429 ----------MPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEK 478
+ + + E+A + G QE + + +
Sbjct: 374 PAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKEMLE 433
Query: 479 TGNGK-------KKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPEL 531
G + K V + + + + I E +
Sbjct: 434 KGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYG------------NPEWKEKARKA 481
Query: 532 DDFTPTG--TGEPPLSKAVSWVQ 552
+ T + W+
Sbjct: 482 LERMKILPETRRAQFEAIIDWLD 504
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase,
aminoacyl-tRNA synthetase, ATP-binding, nucleotide-
protein biosynthesis; 1.77A {Aquifex aeolicus} PDB:
3pz0_A 3pz5_A
Length = 219
Score = 311 bits (799), Expect = e-104
Identities = 97/227 (42%), Positives = 131/227 (57%), Gaps = 30/227 (13%)
Query: 286 GRSEGAEMDFRVLDSDGQ----------------ERDIKITVYTTRPDTIFGATYLVVAP 329
GRSEGA + F V + + E+ I I V+TTRPDT+FGAT++V+AP
Sbjct: 1 GRSEGALIRFYVEIEEPEKFLNCVPEELKETLLKEKRIYIDVFTTRPDTVFGATFVVLAP 60
Query: 330 EHPLLSSLVSTTQSQN------IEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASG 383
EHPL+ L + +E + + S ERT ++++K GVF G YA NPA+G
Sbjct: 61 EHPLVPVLACIGERLGNACYSDVENFVEKMKKMSTRERT-MEEDKEGVFLGVYATNPANG 119
Query: 384 EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYT 443
E IP+W A+YVL YGTGAIM VPAHD RD EFA K+D+ I VV P+ + AY
Sbjct: 120 EKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDF-EKGAYE 178
Query: 444 GEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKL 490
G+G +VNS +GL + A K+ EW + G G+KKV+Y+L
Sbjct: 179 GKGTLVNSDGF------DGLDSETAKRKITEWLQDRGLGEKKVSYRL 219
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia
coli} PDB: 2ajh_A 2aji_A
Length = 196
Score = 302 bits (777), Expect = e-101
Identities = 75/208 (36%), Positives = 106/208 (50%), Gaps = 14/208 (6%)
Query: 280 MQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVS 339
+ EG E+ F V D D +TVYTTRPDT G TYL VA HPL
Sbjct: 2 HHHHHHAMGEGVEITFNVNDYDN-----TLTVYTTRPDTFMGCTYLAVAAGHPLAQKA-- 54
Query: 340 TTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYG 399
+ + + + E EK GV +G A +P +GE IP+W A++VL YG
Sbjct: 55 AENNPELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYG 114
Query: 400 TGAIMAVPAHDTRDHEFALKFDISIHSVVMP-DDESSSQSEKAYTGEGLIVNSSNLISGL 458
TGA+MAVP HD RD+EFA K+ ++I V++ D S++A T +G++ NS
Sbjct: 115 TGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEF---- 170
Query: 459 DINGLSCQEATSKVIEWAEKTGNGKKKV 486
NGL + A + + + G G++KV
Sbjct: 171 --NGLDHEAAFNAIADKLTAMGVGERKV 196
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 113 bits (285), Expect = 2e-26
Identities = 107/544 (19%), Positives = 165/544 (30%), Gaps = 177/544 (32%)
Query: 70 EPKWQSYWENNRTFRTPDEIDTSKPKFYVL-DMFPYPSGAGLHVGHPLGYTATDILARLK 128
EP+ Q W+ + E + F +L D PY +G LH+GH L D + R K
Sbjct: 24 EPQIQEKWDAEDQYHKALEKNKGNETF-ILHDGPPYANGN-LHMGHALNKILKDFIVRYK 81
Query: 129 RMQGYNVLHPMGWDAFGLPAEQYAIETGTHPK---ITTLRN---------INRFRTQLKS 176
MQG+ + GWD GLP EQ + G K R I + +
Sbjct: 82 TMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRR 141
Query: 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG 236
LG D+N T++P Y IF ++ +GL Y+ + PV W P+ + LA E+
Sbjct: 142 LGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEI--- 198
Query: 237 VSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFR 296
EY D+ + V F
Sbjct: 199 ----------------------EYHDKRSASIY-------VA----------------FN 213
Query: 297 VLDSDGQ-ERDIKITVYTTRPDTI------------------FGATYLVVAPEHPLLSSL 337
V D G + D K ++TT P TI ++A L ++
Sbjct: 214 VKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEA--LSDAV 271
Query: 338 VSTTQSQNIEEYKNLASRK-SDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLG 396
K +LE A++P + D+V
Sbjct: 272 AEALDWDK-ASIKLEKEYTGKELE-------------WVVAQHPFLDRESLVINGDHVTT 317
Query: 397 SYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLIS 456
GTG + P H D+ ++++ + S + G+
Sbjct: 318 DAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDK--------------GVFTEEGGQFE 363
Query: 457 GLDINGLSCQEATSKVIEWAEKTGN----------------GKKKVNY-----------K 489
G+ +A V + + G KK V + K
Sbjct: 364 GMFY-----DKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISK 418
Query: 490 LR-----------------------------DWLFARQRYWGEPIPVVFLDGTGETVPLH 520
+R +W+ +RQR WG P+P VF GE +
Sbjct: 419 VRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLP-VFYAENGE--IIM 475
Query: 521 EAEL 524
E
Sbjct: 476 TKET 479
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 109 bits (276), Expect = 2e-25
Identities = 49/189 (25%), Positives = 75/189 (39%), Gaps = 22/189 (11%)
Query: 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDI 123
F ++E + ++W+ + F+ E P++ V + P +G HVGH + D+
Sbjct: 8 PNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGL-PHVGHAQARSYKDL 66
Query: 124 LARLKRMQGYNVLHPMGWDAFGLPAEQYAI-ETGTHPK--ITT--------------LRN 166
R K M+GY GWD GLP E + G K I
Sbjct: 67 FPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTY 126
Query: 167 INRFRTQLKSLGFSYDWNREISTIEPAY--YKWTQWIFLQLLKRGLAYQAEVPVNWCPAL 224
+ + + + D +T+EP Y W W L RGL Y+ V +CP
Sbjct: 127 EKEWEAFTERIAYWVDLEDAYATLEPTYIESIW--WSLKNLFDRGLLYRDHKVVPYCPRC 184
Query: 225 GTVLANEEV 233
GT L++ EV
Sbjct: 185 GTPLSSHEV 193
Score = 43.7 bits (104), Expect = 2e-04
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 240 RGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW-PESVKEMQ-RNWI 285
R P++ W +K T + D L+ + ++ W P +KE + W+
Sbjct: 391 RCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEWL 438
Score = 39.1 bits (92), Expect = 0.004
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 491 RDWLFARQRYWGEPIPVVFLDGTGETV 517
DW +R RYWG P+P+ G+
Sbjct: 442 VDWALSRNRYWGTPLPIWVCQACGKEE 468
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 109 bits (276), Expect = 3e-25
Identities = 63/204 (30%), Positives = 81/204 (39%), Gaps = 54/204 (26%)
Query: 63 AYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAG-LHVGHPLGYTAT 121
AY +EPKW W N P KP F + P P+ G LH+GH L +
Sbjct: 6 AYDPKSVEPKWAEKWAKNPFVANPKS---GKPPFVI--FMPPPNVTGSLHMGHALDNSLQ 60
Query: 122 DILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGT-HPKITT-------LR--NINRF- 170
D L R KRM+G+ + W LP GT H I T L R
Sbjct: 61 DALIRYKRMRGFEAV----W----LP--------GTDHAGIATQVVVERLLLKEGKTRHD 104
Query: 171 ---------------------RTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 209
QLK LG S DW+RE T++ + ++ F + G
Sbjct: 105 LGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEG 164
Query: 210 LAYQAEVPVNWCPALGTVLANEEV 233
LAY+A VNWCP T L++ EV
Sbjct: 165 LAYRAPRLVNWCPRCETTLSDLEV 188
Score = 51.8 bits (125), Expect = 5e-07
Identities = 43/182 (23%), Positives = 65/182 (35%), Gaps = 54/182 (29%)
Query: 309 ITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEK 368
I + T RP+T+F + V PE E Y++L
Sbjct: 210 IEIATVRPETVFADQAIAVHPED---------------ERYRHLL--------------- 239
Query: 369 TGVFSGCYARNPASGEAIPIWVAD-YVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSV 427
G AR P + IPI +AD V +GTGA+ PAHD D+E + + SV
Sbjct: 240 -----GKRARIPLTEVWIPI-LADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSV 293
Query: 428 VMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVN 487
+ + + + GL EA K +E + G+ K+ +
Sbjct: 294 I---NLEGRMEGERVPEA--------------LRGLDRFEARRKAVELFREAGHLVKEED 336
Query: 488 YK 489
Y
Sbjct: 337 YT 338
Score = 30.2 bits (69), Expect = 2.5
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 490 LRDWLFARQRYWGEPIPVVFLDGTGETV---PLHEAELPLTLPELDD 533
++DW +RQ +WG IP + + P E P +
Sbjct: 397 VKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGS 443
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 103 bits (258), Expect = 3e-23
Identities = 48/221 (21%), Positives = 85/221 (38%), Gaps = 33/221 (14%)
Query: 95 KFYVLDMFPYPSGAGLHVGHPLG-YTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAI 153
++ V PY +G +H GH G Y DI R R++G +V+ G D G P A+
Sbjct: 3 RYMVTSALPYANGP-IHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRAL 61
Query: 154 ETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213
+ G P+ + + + S+D+ T P +YK +Q FL+ + G +
Sbjct: 62 KEGRSPREIVDEFHEQIKITFQRAKISFDFF--GRTELPIHYKLSQEFFLKAYENGHLVK 119
Query: 214 AEVPVNWCP-----------------------------ALGTVLANEEVVDGVSERGGHP 244
+C G L E +++ G P
Sbjct: 120 KVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAICGRP 179
Query: 245 VIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWI 285
+ + + +K+ ++A+RL ++ W +VK M +WI
Sbjct: 180 ISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWI 220
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase;
2.60A {Giardia intestinalis}
Length = 311
Score = 97.5 bits (242), Expect = 2e-22
Identities = 38/285 (13%), Positives = 80/285 (28%), Gaps = 55/285 (19%)
Query: 248 KPMRQWMLKITEYADRLLDDLDDLDWPE-SVKEMQRNWIGRSEGAEMDFRVLDSDGQERD 306
+ + + + + D +DD + ++K + +++ D
Sbjct: 22 TTLLEEQREQQQEGEEEGDGMDDSLAEKLNIKLPRFYSNPKNKAIFDQLWENQVDN--AK 79
Query: 307 IKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNI----EEYKNLA----SRKSD 358
+ + T RP+T+ G T V P + + I N+A +
Sbjct: 80 VYLLAATLRPETMVGQTNCWVLPTGRY--GAYYINKDEVIIVSEHAAVNMAHQGLNNNKP 137
Query: 359 LERTELQKEKTGV-FSGCYARNPASG-EAIPIWVADYVLGSYGTGAIMAVPAHDTRD--- 413
+ E +G R P S E I + + + GTG + +VP+ D
Sbjct: 138 FGELDFISEISGSDLLLATVRAPLSPYEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYAC 197
Query: 414 --------HEFALKFDISIHSVVMPDDESSSQSEKAYTG-------EGLIVNSSN----- 453
+ A K+ + + ++ P E V+S +
Sbjct: 198 YKDILENRNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGTLSAVRLCEESNVSSLHDRAKL 257
Query: 454 ----------------LISGLDINGLSCQEATSKVIEWAEKTGNG 482
+ G G S ++ + +
Sbjct: 258 TQIKEICYTKGFYTGIMKMG-PFAGQSVKDCKQSCRDLLVQNNQC 301
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 90.1 bits (223), Expect = 3e-19
Identities = 42/209 (20%), Positives = 79/209 (37%), Gaps = 19/209 (9%)
Query: 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYT--ATDILARLKRMQGYNVLHPMGWDAFGLPA 148
+ F+V Y + A H+GH Y+ TD++ R R++G V G D G
Sbjct: 6 KVEKVFFVTSPIYYVNAA-PHIGH--VYSTLITDVIGRYHRVKGERVFALTGTDEHGQKV 62
Query: 149 EQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKR 208
+ A + P T F+ + + +S D I T + + ++ +L ++
Sbjct: 63 AEAAKQKQVSPYDFTTAVAGEFKKXFEQMDYSID--YFIRTTNEQHKAVVKELWTKLEQK 120
Query: 209 GLAYQAEVPVNWCPALGTVLANEEVVDGVSERG---------GHPVIRKPMRQWMLKITE 259
G Y + + + L + + DGV + G GH V +M +++
Sbjct: 121 GDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSA 180
Query: 260 YADRLLDDLD---DLDWPESVKEMQRNWI 285
+ +RLL+ PE + +
Sbjct: 181 FRERLLEWYHANPGCIVPEFRRREVIRAV 209
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 88.1 bits (219), Expect = 1e-18
Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 3/174 (1%)
Query: 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYA 152
+ FYV Y + H+GH D LAR R+ GY G D G + A
Sbjct: 2 EKVFYVTTPIYYVNAE-PHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAA 60
Query: 153 IETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAY 212
G PK R RF+ LG +YD I T E + K Q + ++ + G Y
Sbjct: 61 QAAGEDPKAFVDRVSGRFKRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIY 118
Query: 213 QAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLD 266
E +C + +E+V+G+ G PV R+ + ++ +Y L +
Sbjct: 119 YGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQE 172
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 86.5 bits (215), Expect = 4e-18
Identities = 37/213 (17%), Positives = 71/213 (33%), Gaps = 34/213 (15%)
Query: 103 PYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKIT 162
PY +G+ +H+GH L + D+ R +RM+G+ V DA G P A + G P+
Sbjct: 27 PYANGS-IHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQM 85
Query: 163 TLRNINRFRTQLKSLGFSYD-WNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWC 221
+T SYD ++ T + ++ I+ +L + G + +
Sbjct: 86 IGEMSQEHQTDFAGFNISYDNYHS---THSEENRQLSELIYSRLKENGFIKNRTISQLYD 142
Query: 222 PAL-----------------------------GTVLANEEVVDGVSERGGHPVIRKPMRQ 252
P G + E+++ S G + +
Sbjct: 143 PEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRDSEH 202
Query: 253 WMLKITEYADRLLDDLDDLDWPESVKEMQRNWI 285
+ + +++ L E V + W
Sbjct: 203 FFFDLPSFSEMLQAWTRSGALQEQVANKMQEWF 235
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 85.4 bits (212), Expect = 8e-18
Identities = 50/182 (27%), Positives = 73/182 (40%), Gaps = 14/182 (7%)
Query: 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQ 150
T KFYV Y + H+GH A D +AR R++ Y+V G D GL ++
Sbjct: 2 TLMKKFYVTTPIYYVNDV-PHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQK 60
Query: 151 YAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGL 210
A E G PK RN RF+ + L Y + I T +P + K+ Q +F + KRG
Sbjct: 61 KAEELGISPKELVDRNAERFKKLWEFLKIEYT--KFIRTTDPYHVKFVQKVFEECYKRGD 118
Query: 211 AYQAE------VPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRL 264
Y E V C E D + ++++Y D+L
Sbjct: 119 IYLGEYEGWYCVG---CEEF--KSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKL 173
Query: 265 LD 266
L+
Sbjct: 174 LE 175
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 85.4 bits (212), Expect = 9e-18
Identities = 54/197 (27%), Positives = 80/197 (40%), Gaps = 13/197 (6%)
Query: 77 WENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVL 136
+T S+ K+Y+ YP+G H+GH ATD +AR +R+ G +V
Sbjct: 8 HMGTLEAQTQGPGSMSREKYYITTAIAYPNGK-PHIGHAYELIATDAMARFQRLNGMDVY 66
Query: 137 HPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYK 196
G D G+ Q A + G P+ RN + FR + L S D I T E +YK
Sbjct: 67 FLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVLNSSND--DYIRTSEERHYK 124
Query: 197 WTQWIFLQLLKRGLAYQAE------VPVNWCPALGTVLANEEVVDG-VSERGGHPVIRKP 249
+Q I+ ++ G Y+ V A E DG G PV
Sbjct: 125 ASQAIWQAMVANGDIYKGGYAGWYSVR---DEAYYGEEETEVRADGVRYGPQGTPVEWVE 181
Query: 250 MRQWMLKITEYADRLLD 266
+ +++ Y D+LLD
Sbjct: 182 EESYFFRLSAYQDKLLD 198
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 83.8 bits (208), Expect = 3e-17
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 12/183 (6%)
Query: 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYT--ATDILARLKRMQGYNVLHPMGWDAFGLPA 148
FY+ YP+G H+GH Y ATD +AR KR+ GY+V + G D G
Sbjct: 9 GGSEPFYITTAIAYPNGV-PHIGH--AYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKM 65
Query: 149 EQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKR 208
+ A + G RN + F+ + L S+D R I T + +Y+ ++ I+ ++
Sbjct: 66 AETAAKEGIPAAELARRNSDVFQRLQEKLNISFD--RFIRTSDADHYEASKAIWKRMADA 123
Query: 209 GLAYQAEVPVNWCPALGTVLANEEVVDGVSERG-----GHPVIRKPMRQWMLKITEYADR 263
G Y + E + G PV + + +++ Y DR
Sbjct: 124 GDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDR 183
Query: 264 LLD 266
LL
Sbjct: 184 LLA 186
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 80.8 bits (200), Expect = 3e-16
Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 16/187 (8%)
Query: 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYT--ATDILARLKRMQGYNVLHPMGWDAFGLPA 148
+ F+ Y + + H+GH Y+ D+L R R++G V G D G
Sbjct: 23 KKQKVFFATTPIYYVNAS-PHIGH--VYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKV 79
Query: 149 EQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKR 208
+ A + G P T + F+ + + + + I T P + K Q I+ +L +
Sbjct: 80 AEAAAKQGVSPMDFTTSVSSEFKQCFQEMNYDMN--YFIRTTNPTHEKLVQDIWKKLAAK 137
Query: 209 GLAYQAEVPVNWCPALGTVLANEEVVDGVSERG---------GHPVIRKPMRQWMLKITE 259
G Y + + + + L + V DGV G GH V +M +++
Sbjct: 138 GDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSA 197
Query: 260 YADRLLD 266
+ +RLL
Sbjct: 198 FRERLLK 204
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase,
phosphoprotein, editing domain, nucleotide-binding,
hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Length = 252
Score = 66.9 bits (163), Expect = 2e-12
Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 10/120 (8%)
Query: 303 QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNI----EEYKNLASRKSD 358
+ ++I + T RP+T+FG T V P+ T + +N++ +
Sbjct: 26 KGKNIFLVAATLRPETMFGQTNCWVRPDMKY--IGFETVNGDIFICTQKAARNMSYQGFT 83
Query: 359 LERTELQKEKT---GVFSGCYARNPASG-EAIPIWVADYVLGSYGTGAIMAVPAHDTRDH 414
+ + K G P + + I + + GTG + +VP+ D
Sbjct: 84 KDNGVVPVVKELMGEEILGASLSAPLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDI 143
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain,
hydrolysis of MIS-charged trnas, benzoxaborole,
anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB:
2wfe_A*
Length = 261
Score = 65.7 bits (160), Expect = 4e-12
Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 10/119 (8%)
Query: 303 QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNI----EEYKNLASRKSD 358
+E + + T RP+T++G T V+P+ + +KN++ +
Sbjct: 29 KENKVYLVAATLRPETMYGQTCCFVSPKIDY--GVFDAGNGDYFITTERAFKNMSFQNLT 86
Query: 359 LERTELQKEKT---GVFSGCYARNP-ASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRD 413
+R + T G P A + + + + VL + GTG + VP+ D
Sbjct: 87 PKRGYYKPLFTINGKTLIGSRIDAPYAVNKNLRVLPMETVLATKGTGVVTCVPSDSPDD 145
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.5 bits (143), Expect = 2e-09
Identities = 76/590 (12%), Positives = 166/590 (28%), Gaps = 181/590 (30%)
Query: 52 EQKQKQQV-------VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPY 104
KQ++ V ++ Y F + + + + T I+ + +F
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKF--LMSPIK-TEQRQPSMMTRMYIEQRDRLYNDNQVFA- 127
Query: 105 PSGAGLHVGHPLGYTA-TDILARLKRMQGYNVLHPMGWDAFG---LPAEQYAIETGTHPK 160
+V Y L L+ + ++ + G + +
Sbjct: 128 ----KYNVSRLQPYLKLRQALLELRPAKNV-LIDGVL--GSGKTWVALD----------- 169
Query: 161 ITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNW 220
+ ++ Q K + F W + + + L K L YQ + NW
Sbjct: 170 --VCLS---YKVQCK-MDFKIFW------LNLKNCNSPETVLEMLQK--LLYQIDP--NW 213
Query: 221 CPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW-PESVKE 279
+ + + +R+ ++ + L L ++ ++
Sbjct: 214 TSRSDHSSNIKLRIHSIQAE-----LRRLLKSKPYE------NCLLVLLNV-QNAKAWNA 261
Query: 280 MQRNWIGRSEGAEMDFR----VLDSDGQERDIKITVYTTRPD--------------TIFG 321
+ + Q D TT ++
Sbjct: 262 F-------------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL- 307
Query: 322 ATYLVVAPE---------HPLLSSLVSTTQSQNI---EEYKNLASRK---------SDLE 360
YL P+ +P S+++ + + + +K++ K + LE
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 361 RTELQK--EKTGVFSGCYARNPASGEAIP------IWVADYVLGSYGTGAIMAVPAHDTR 412
E +K ++ VF P S IP IW + ++ +
Sbjct: 368 PAEYRKMFDRLSVF-------PPS-AHIPTILLSLIWFD---VIKSDVMVVV------NK 410
Query: 413 DHEFAL------KFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQ 466
H+++L + ISI S+ + E + E Y IV+ N+ D + L
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYL---ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 467 EATS----------KVIEWAEKTGNGKKK-VNYKLRDWLFARQRYWGEPIPVVFLDGTGE 515
K IE E+ + +++ +L + R+ + +G
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF---RFLEQKIRHDSTA-----WNASGS 519
Query: 516 TVPL-------------HEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQ 552
+ ++ + + + DF P SK ++
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
Score = 40.2 bits (93), Expect = 0.002
Identities = 58/330 (17%), Positives = 97/330 (29%), Gaps = 77/330 (23%)
Query: 78 ENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLH 137
++ T TPDE+ + K+ P +P I+A R
Sbjct: 293 HHSMTL-TPDEVKSLLLKYLDCRPQDLPREV--LTTNPR---RLSIIAESIRD------G 340
Query: 138 PMGWDAFGLPAEQYAIETGTHPKITTLRNIN--RFRTQLKSLG-FSYD-----------W 183
WD + + + T ++L + +R L F W
Sbjct: 341 LATWDNW----KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 184 NREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTV--LANEEVVDGVSERG 241
++ + + +L K L + + ++ + E V +E
Sbjct: 397 F-DVIKSDV------MVVVNKLHKYSLVEK-----QPKESTISIPSIYLELKVKLENEYA 444
Query: 242 GHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGR----SEGAEM---- 293
H I + Y D DDL P + + + IG E E
Sbjct: 445 LHRSI----------VDHYNIPKTFDSDDLI-PPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 294 -----DFRVLDS----DGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQS- 343
DFR L+ D + ++ T F Y + P LV+
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--ICDNDPKYERLVNAILDF 551
Query: 344 -QNIEEYKNLASRKSDLERTELQKEKTGVF 372
IEE + S+ +DL R L E +F
Sbjct: 552 LPKIEE-NLICSKYTDLLRIALMAEDEAIF 580
Score = 31.0 bits (69), Expect = 1.4
Identities = 45/287 (15%), Positives = 82/287 (28%), Gaps = 110/287 (38%)
Query: 293 MDFRVLDSDGQERDIKITVYTTRPDTI--FGATYLVVAPEHPLLSSLVSTTQSQNIEEYK 350
MDF + Q +DI ++V+ + F + P+ +LS EE
Sbjct: 7 MDFETGEHQYQYKDI-LSVF--EDAFVDNFDCKDVQDMPK-SILSK----------EEID 52
Query: 351 NLASRKSDLERTE------LQKEKTGV--FSGC-----YA----------RNPASGEAI- 386
++ K + T L K++ V F Y R P+ +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 387 -----PIW----------------------------VADYVL--GSYGTG----AIMAVP 407
++ A VL G G+G A+
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC- 171
Query: 408 AHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQE 467
++ K D I + + + S E ++ L+ +D N S +
Sbjct: 172 ----LSYKVQCKMDFKIFWLNLKNCNSP---------ETVLEMLQKLLYQIDPNWTSRSD 218
Query: 468 ATSKV---IEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLD 511
+S + I + +LR L + Y ++ L
Sbjct: 219 HSSNIKLRIHSIQA----------ELRR-LLKSKPY---ENCLLVLL 251
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus,
translation, amino acid, structural genomics; 1.70A
{Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Length = 147
Score = 49.8 bits (120), Expect = 2e-07
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 37/108 (34%)
Query: 309 ITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEK 368
I + T RP+T+F + V PE E Y++L +++ +
Sbjct: 19 IEIATVRPETVFADQAIAVHPED---------------ERYRHLLGKRARI--------- 54
Query: 369 TGVFSGCYARNPASGEAIPIWVAD-YVLGSYGTGAIMAVPAHDTRDHE 415
P + IPI +AD V +GTGA+ PAHD D+E
Sbjct: 55 -----------PLTEVWIPI-LADPAVEKDFGTGALKVTPAHDPLDYE 90
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 5e-07
Identities = 89/569 (15%), Positives = 153/569 (26%), Gaps = 192/569 (33%)
Query: 3 TQHIHIQFLPQSF--SLQKQCTSFTVVKRPSWFNSCSTSGAIVR----CSVNEIEEQKQK 56
L + F L + F P+ + + + + S + +E K
Sbjct: 25 ASFFIASQLQEQFNKILPEPTEGFAADDEPT-----TPAELVGKFLGYVS-SLVEPSKVG 78
Query: 57 Q--QVVKRAYPFHEIEPKWQSYWENN------RTFRTPDEIDTSKPKFYVLDMFPYPSGA 108
Q QV+ E E Y E N ++ K K + + A
Sbjct: 79 QFDQVLNLC--LTEFE---NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI----TA 129
Query: 109 GLHVGHPLGYTATDIL--------ARLKRMQGYNVLHPMGWDAFG-----------LPAE 149
+ P + L A+L + FG L +
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQL-----VAI--------FGGQGNTDDYFEEL-RD 175
Query: 150 QYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYK---WTQWIFLQLL 206
Y H + L I L L R E + + +W+
Sbjct: 176 LYQTY---HVLVGDL--IKFSAETLSELI------RTTLDAEKVFTQGLNILEWLENPSN 224
Query: 207 KRGLAYQAEVPVNWCPALG-TVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLL 265
Y +P++ CP +G LA+ V + G P +R ++ T ++ L+
Sbjct: 225 TPDKDYLLSIPIS-CPLIGVIQLAHYVVTAKLL--GFTP---GELRSYLKGATGHSQGLV 278
Query: 266 --------DDLDDLDWPESVKEMQRN--WIG-RS---------------------EGAE- 292
D + SV++ +IG R EG
Sbjct: 279 TAVAIAETDSWESFF--VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 293 -MDFRVLD-SDGQ-ERDIKIT-VYTTRPDTIF-----GATYLVVA--PEHPLLSSLVSTT 341
M + + + Q + + T + + GA LVV+ P+ SL
Sbjct: 337 PM-LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ-----SLYGL- 389
Query: 342 QSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPAS--------GEAIPIWVADY 393
+ + + K A D R + K FS + P + A + D
Sbjct: 390 -NLTLRKAK--APSGLDQSRIPFSERKL-KFSNRF--LPVASPFHSHLLVPASDLINKD- 442
Query: 394 VLGSYG---TGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVN 450
L + +P +DT D G L V
Sbjct: 443 -LVKNNVSFNAKDIQIPVYDTFD------------------------------GSDLRVL 471
Query: 451 SSNLISGLDINGLSCQEATSKVIEWAEKT 479
S ++ + ++W E T
Sbjct: 472 SGSISERI------VDCIIRLPVKW-ETT 493
Score = 36.6 bits (84), Expect = 0.026
Identities = 39/223 (17%), Positives = 69/223 (30%), Gaps = 77/223 (34%)
Query: 73 WQ---SYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKR 129
W +++++ F D I + P + F G + + T + +LK
Sbjct: 1646 WNRADNHFKDTYGFSILD-IVINNPVNLTI-HFGGEKGKRIRENYSAMIFETIVDGKLKT 1703
Query: 130 MQGYNVLHPMGWD-AFGLPAE-----QYAIETGTHPKITTLRNINRFRTQLK-------- 175
+ + ++ F Q+ T P +T + F LK
Sbjct: 1704 EKIFKEINEHSTSYTFRSEKGLLSATQF-----TQPALTLM-EKAAFE-DLKSKGLIPAD 1756
Query: 176 ------SLGFSYDWNREIS---------TIEPAYYKWTQWIFLQLL-KRGLAYQAEVP-- 217
SLG E + +IE ++++ RG+ Q VP
Sbjct: 1757 ATFAGHSLG-------EYAALASLADVMSIESL---------VEVVFYRGMTMQVAVPRD 1800
Query: 218 -----------VNWCP----ALGTVLANEEVVDGVSERGGHPV 245
+N P A + A + VV+ V +R G V
Sbjct: 1801 ELGRSNYGMIAIN--PGRVAASFSQEALQYVVERVGKRTGWLV 1841
Score = 34.3 bits (78), Expect = 0.14
Identities = 83/492 (16%), Positives = 143/492 (29%), Gaps = 180/492 (36%)
Query: 153 IETGTHPKITTLRNINRFRTQLK--SLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGL 210
+ T + + L+ +F L + GF+ D + + E L+ + L
Sbjct: 22 VPTASFFIASQLQE--QFNKILPEPTEGFAAD-DEPTTPAE-------------LVGKFL 65
Query: 211 AYQA-EVPVNWCPALGTV------------LANEEVVDGVSERGGHPVIRKPMRQWMLKI 257
Y + V + V L ++ H +
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI---------HAL------------ 104
Query: 258 TEYADRLLDDLDDLDWPESVKEMQRNW------IGRSEGAEMDFRVLDS--DGQERDIKI 309
A +LL + D KE+ +N+ R + + + + +G +
Sbjct: 105 ---AAKLLQENDTT--LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ---- 155
Query: 310 TVYTTRPDTIFG-----ATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRK-SDLERTE 363
+ IFG Y E L L T + + ++ S+L RT
Sbjct: 156 -LVA-----IFGGQGNTDDYF---EE---LRDLYQTYHV-LVGDLIKFSAETLSELIRTT 202
Query: 364 LQKEKTGVFS-GC----------------Y-ARNPASGEAIP-IWVADYVLGSYG-TGAI 403
L EK VF+ G Y P S P I V L Y T +
Sbjct: 203 LDAEK--VFTQGLNILEWLENPSNTPDKDYLLSIPIS---CPLIGVIQ--LAHYVVTAKL 255
Query: 404 MAVPAHDTRDHEFALKFDISIHS--VVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDIN 461
+ + R + + HS +V ++ + + E V+ I+ L
Sbjct: 256 LGFTPGELRSYLKGA----TGHSQGLV-----TAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 462 GLSCQEAT------SKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDG-TG 514
G+ C EA ++E + + G P P++ + T
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNE--------------------GVPSPMLSISNLTQ 346
Query: 515 ETVPLHEAELPLTLPE-------L----DDFTPTGTGEPPLS-----------KAVSWV- 551
E V + + LP L + +G PP S KA S +
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG---PPQSLYGLNLTLRKAKAPSGLD 403
Query: 552 QT-TEHSSGKPA 562
Q+ S K
Sbjct: 404 QSRIPFSERKLK 415
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 32.6 bits (75), Expect = 0.40
Identities = 32/157 (20%), Positives = 44/157 (28%), Gaps = 55/157 (35%)
Query: 81 RTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMG 140
R YV + PY + H+GH Y D++ RL G+ V
Sbjct: 32 RPVTPGPTA-----TMYVCGITPYDA---THLGHAATYLTFDLVHRLWLDAGHTV----- 78
Query: 141 WDAFGLPAEQY--------------AIETGTHPKITTLRNINRFRTQLKSLGFSYDWNRE 186
QY A G + R FR + +L
Sbjct: 79 ---------QYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALR-------- 121
Query: 187 ISTIEPA--YYKWTQWI-----FLQ-LLKRGLAYQAE 215
+ P Y T I ++ LL G AY E
Sbjct: 122 ---VLPPHDYVAATDAIAEVVEMVEKLLASGAAYIVE 155
>1ghp_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance,
beta-lactam hydrolysis, benzylpenicillin, cephaloridine;
HET: PNM; 1.76A {Staphylococcus aureus} SCOP: e.3.1.1
PDB: 1ghi_A* 1ghm_A* 1kgf_A 1kge_A 1ome_A 1kgg_A 1dja_A
3blm_A 1blh_A* 1blc_A 1djc_A 1djb_A 1blp_A 1pio_A
Length = 258
Score = 31.8 bits (72), Expect = 0.52
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 243 HPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDG 302
+K + ML + D + P+ K ++ + + D + G
Sbjct: 168 SKENKKFLLDLMLNNKSGDTLIKDGV-----PKDYKVADKSGQAITYASRNDVAFVYPKG 222
Query: 303 QERDIKITVYTTRPDT 318
Q I + ++T + +
Sbjct: 223 QSEPIVLVIFTNKDNK 238
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose
binding protein, periplasmic binding protein, GBP; HET:
BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Length = 313
Score = 30.5 bits (69), Expect = 1.4
Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 116 LGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175
+GY + +L + ++ N L + + I+TG + T N++ + +++
Sbjct: 241 MGYLSVTVLYLMNKIGVQNTLMMLPKVKVDGKVDYV-IDTG--VDVVTPENLDEYLKKME 297
Query: 176 SLGFSYDW 183
LG +
Sbjct: 298 ELGIPIKF 305
>3c5a_A Class A carbapenemase KPC-2; beta-lactamase, C-terminal deleted
mutant, plasmid, hydrolase; HET: CIT; 1.23A {Escherichia
coli} PDB: 3rxw_A* 3rxx_A* 2ods_A 2ov5_A* 3e2k_A 3e2l_A*
Length = 264
Score = 29.9 bits (67), Expect = 1.7
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 6/86 (6%)
Query: 243 HPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDG 302
R+ W+ T R+ + P + G D+ V+ G
Sbjct: 174 AAPQRQQFVDWLKGNTTGNHRIRAAV-----PADWAVGDKTGTCGVYGTANDYAVVWPTG 228
Query: 303 QERDIKITVYTTRPDTIFGATYLVVA 328
+ I + VYT P+ + V+A
Sbjct: 229 RAP-IVLAVYTRAPNKDDKHSEAVIA 253
>4euz_A Carbapenem-hydrolizing beta-lactamase SFC-1; carbapenemase,
hydrolase, antibiotic resistance, beta-lactam complex;
HET: HAR MEM; 1.08A {Serratia fonticola} PDB: 4eqi_A
4ev4_A*
Length = 283
Score = 29.6 bits (66), Expect = 2.6
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 6/75 (8%)
Query: 243 HPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDG 302
R + W T R+ + P + + G D+ V+
Sbjct: 179 GLTERHQLMDWFKGNTTGGARIRASV-----PANWVVGDKTGTCGVYGTANDYAVIWPVA 233
Query: 303 QERDIKITVYTTRPD 317
+ + VYT++PD
Sbjct: 234 HAPIV-LAVYTSKPD 247
>1bsg_A Beta lactamase, penicillinase; hydrolase, antibiotic resistance;
1.85A {Streptomyces albus} SCOP: e.3.1.1
Length = 266
Score = 29.6 bits (66), Expect = 2.9
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 10/101 (9%)
Query: 217 PVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPES 276
+ +V G +P R+ + W+L T DR L P+
Sbjct: 154 VTDTTSPRAITRTYGRLVLG---DALNPRDRRLLTSWLLANTTSGDRFRAGL-----PDD 205
Query: 277 VKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPD 317
+ G G D V G+ + +TV T + +
Sbjct: 206 WTLGDKTGAG-RYGTNNDAGVTWPPGRAPIV-LTVLTAKTE 244
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural
genomics, PSI, protein structure initiative; NMR
{Nitrosomonas europaea}
Length = 107
Score = 27.8 bits (62), Expect = 3.3
Identities = 9/70 (12%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 465 CQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAEL 524
C+E + + +K+ + +N + L + + +PV+F + + +
Sbjct: 43 CEEMIASLRVLQKKSWFELEVINIDGNEHLTRL---YNDRVPVLFAVNEDKELCHY---- 95
Query: 525 PLTLPELDDF 534
L + +
Sbjct: 96 FLDSDVIGAY 105
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc
genomics, protein structure initiative; 2.20A
{Campylobacter jejuni}
Length = 464
Score = 29.5 bits (67), Expect = 3.5
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 110 LHVGHPLGYTATDILARLKRMQGYNV 135
LH+GH G D L RL R GY
Sbjct: 45 LHIGHARGAVFGDTLTRLARHLGYKF 70
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 3.5
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 19/44 (43%)
Query: 55 QKQQVVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYV 98
+KQ + K ++ + Y D S P +
Sbjct: 18 EKQALKK-------LQASLKLY--------ADD----SAPALAI 42
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 29.5 bits (67), Expect = 3.8
Identities = 20/121 (16%), Positives = 36/121 (29%), Gaps = 25/121 (20%)
Query: 111 HVGHPLGYTATDILARLKRMQGYNVLHPMGW-DAFGLPAEQY---------AIETGTHPK 160
H+G+ Y D+L + R GY V + M D L + A E G
Sbjct: 57 HIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVY 116
Query: 161 ITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWI-----FLQ-LLKRGLAYQA 214
+ F + L ++ I ++ L ++ + Y +
Sbjct: 117 EISEFFTEAFFNDCRKLNI------VYPDKVL---VASKHIPIMIEVVKILEEKKITYFS 167
Query: 215 E 215
Sbjct: 168 N 168
>2p74_A Beta-lactamase CTX-M-9A; ultra-high resolution, acylation, ESBL,
hydrolase; HET: PO4; 0.88A {Escherichia coli} PDB:
3g2y_A* 4dds_A* 4ddy_A* 4de0_A* 4de1_A* 4de2_A* 4de3_A*
1ylj_A* 1yly_A* 1ym1_A* 1yms_A* 1ymx_A* 3g2z_A* 3g30_A*
3g31_A* 3g32_A* 3g34_A* 3g35_A* 1ylt_A* 1ylz_A* ...
Length = 263
Score = 28.8 bits (64), Expect = 5.2
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 7/86 (8%)
Query: 243 HPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDG 302
R + W+ T A + L P S + G G D V+ G
Sbjct: 175 GETQRAQLVTWLKGNTTGAASIRAGL-----PTSWTAGDKTGSG-DYGTTNDIAVIWPQG 228
Query: 303 QERDIKITVYTTRPDTIFGATYLVVA 328
+ + + Y T+P + V+A
Sbjct: 229 RAPLV-LVTYFTQPQQNAESRRDVLA 253
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 28.4 bits (63), Expect = 6.4
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 92 SKPKFYVLDMFPYPSGAGLHVGHPLG 117
+K FY+ PS +HVGH +
Sbjct: 152 NKKPFYLYTGR-GPSSEAMHVGHLIP 176
>3qhy_A Beta-lactamase; enyzme-inhibitor complex, beta-propeller,
protein:protein interaction; 2.06A {Bacillus anthracis}
Length = 271
Score = 28.0 bits (62), Expect = 8.3
Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 7/75 (9%)
Query: 243 HPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDG 302
R + +WM + + P + ++ G S G D ++
Sbjct: 182 PNHKRNILTKWMKGNATGDKLIRAGV-----PTNWVVADKSGAG-SYGTRNDIAIVWPPN 235
Query: 303 QERDIKITVYTTRPD 317
+ I I + +++ +
Sbjct: 236 RAPII-IAILSSKDE 249
>3b5o_A CADD-like protein of unknown function; structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2, oxidoreductase; HET: MSE; 1.35A {Nostoc
punctiforme} PDB: 3b5p_A*
Length = 244
Score = 28.0 bits (61), Expect = 8.3
Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 24/112 (21%)
Query: 252 QWMLKITEYADRLLDDLDDLDWPESVKEMQRNWI--GRSEGAEMDFRVLDSDGQERDIKI 309
+ ++ + + W +E+Q N S + L +DG E + +
Sbjct: 50 IFPKELVGFTELARRKALGAGWNGVAQELQENIDEEMGSTTGGISHYTLLADGLEEGLGV 109
Query: 310 TVYTTRP-------------------DTIFGATYLVVA---PEHPLLSSLVS 339
V T P D + GATY + A PE L+ LV
Sbjct: 110 AVKNTMPSVATSKLLRTVLSLFDRQVDYVLGATYAIEATSIPELTLIVKLVE 161
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase, nucleotide-binding, protein
biosynthesis, ligase/RNA complex; HET: ANP; 2.00A
{Pyrococcus horikoshii} PDB: 2zuf_A
Length = 629
Score = 28.1 bits (63), Expect = 8.5
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 8/31 (25%)
Query: 110 LHVGH----PLGYTATDILARLKRMQGYNVL 136
LH+GH LG +AR+ R GY V
Sbjct: 134 LHMGHARNAILGDV----MARILRFLGYEVE 160
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; 2.30A
{Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Length = 592
Score = 28.1 bits (63), Expect = 9.0
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 8/31 (25%)
Query: 110 LHVGH----PLGYTATDILARLKRMQGYNVL 136
LHVGH LG +AR+ G VL
Sbjct: 118 LHVGHLRNIALGDA----IARILAYAGREVL 144
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.414
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,200,284
Number of extensions: 569940
Number of successful extensions: 1321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1239
Number of HSP's successfully gapped: 58
Length of query: 577
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 478
Effective length of database: 3,937,614
Effective search space: 1882179492
Effective search space used: 1882179492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.3 bits)