RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 008100
(577 letters)
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 223 bits (569), Expect = 7e-67
Identities = 122/225 (54%), Positives = 155/225 (68%), Gaps = 3/225 (1%)
Query: 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDI 123
Y H IE KWQ +WE + ++ + K YVL MFPYPSG LH+GH YT D+
Sbjct: 4 YNPHAIEAKWQRFWEEKGFMK-AKDLPGGRGKQYVLVMFPYPSGD-LHMGHLKNYTMGDV 61
Query: 124 LARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDW 183
LAR +RMQGY VLHPMGWDAFGLPAE A++ G HPK T NI + + L+ +G YDW
Sbjct: 62 LARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDW 121
Query: 184 NREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGV-SERGG 242
+RE++T EP YY+W QWIFL++ ++GLAY+A+ VNWCP TVLANE+VV+G
Sbjct: 122 DREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHED 181
Query: 243 HPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGR 287
PV ++ + QW L+IT YA+RLL DL+ L+WPE VK MQR WIGR
Sbjct: 182 TPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGR 226
Score = 54.2 bits (129), Expect = 2e-08
Identities = 42/105 (40%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 474 EWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDD 533
W EK ++ +LRDWL +RQRYWG PIP+V VP+ E ELP+ LP+L D
Sbjct: 211 NWPEKVKAMQRAWIGRLRDWLISRQRYWGTPIPMVH-CEACGVVPVPEEELPVLLPDLKD 269
Query: 534 FTP-TGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW 577
G+ PL + +TT G PA+R+T TM + S W
Sbjct: 270 VEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSW 314
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 177 bits (449), Expect = 4e-50
Identities = 49/240 (20%), Positives = 86/240 (35%), Gaps = 21/240 (8%)
Query: 66 FHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILA 125
F ++E + ++W+ + F+ E P++ V + P +G HVGH + D+
Sbjct: 10 FPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGL-PHVGHAQARSYKDLFP 68
Query: 126 RLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINR---------------- 169
R K M+GY GWD GLP E + +
Sbjct: 69 RYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEK 128
Query: 170 -FRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWC--PALGT 226
+ + + + D +T+EP Y + W L RGL Y+ V +C
Sbjct: 129 EWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPL 188
Query: 227 VLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-WPESVKEMQRNWI 285
+ R P++ W +K T + D L+ + ++ P +KE +
Sbjct: 189 SSHEVALGYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEW 248
Score = 42.2 bits (98), Expect = 1e-04
Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 5/92 (5%)
Query: 486 VNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLS 545
L DW +R RYWG P+P+ G+ + + + P P
Sbjct: 248 WLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQ----ELKARATKPLPEPFDPHR 303
Query: 546 KAVSWVQTTEHSSGKPARRETSTMPQWAGSCW 577
V V+ G RR + W S
Sbjct: 304 PYVDQVELACA-CGGTMRRVPYVIDVWYDSGA 334
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 174 bits (441), Expect = 3e-49
Identities = 69/247 (27%), Positives = 101/247 (40%), Gaps = 25/247 (10%)
Query: 63 AYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATD 122
AY +EPKW W N P KP F + P +G+ LH+GH L + D
Sbjct: 6 AYDPKSVEPKWAEKWAKNPFVANPKS---GKPPFVIFMPPPNVTGS-LHMGHALDNSLQD 61
Query: 123 ILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKIT----------------TLRN 166
L R KRM+G+ + G D G+ + T +
Sbjct: 62 ALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEES 121
Query: 167 INRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGT 226
QLK LG S DW+RE T++ + ++ F + GLAY+A VNWCP T
Sbjct: 122 GGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCET 181
Query: 227 VLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD---WPESVKEMQRN 283
L++ E R G P+ QW L++ A+ +L L D PE K++ +
Sbjct: 182 TLSDLE--VETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMD 239
Query: 284 WIGRSEG 290
W+ +
Sbjct: 240 WLENVKD 246
Score = 29.5 bits (65), Expect = 1.3
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 488 YKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKA 547
++DW +RQ +WG IP + + V + E L P + G P L +
Sbjct: 242 ENVKDWNISRQLWWGHQIPAWY-CEDCQAVNVPRPERYLEDPTSCE----ACGSPRLKRD 296
Query: 548 VSWVQTTEHSSGKPARR 564
T S+ P
Sbjct: 297 EDVFDTWFSSALWPLST 313
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 170 bits (432), Expect = 1e-48
Identities = 40/190 (21%), Positives = 72/190 (37%), Gaps = 9/190 (4%)
Query: 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIE 154
K V PY +G+ +H+GH L + D+ R +RM+G+ V DA G P A +
Sbjct: 3 KILVTCALPYANGS-IHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ 61
Query: 155 TGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214
G P+ +T GF+ ++ ST + ++ I+ +L + G
Sbjct: 62 LGITPEQMIGEMSQEHQTDFA--GFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNR 119
Query: 215 EVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWP 274
+ + P G L + VV G + + + + +++ L
Sbjct: 120 TISQLYDPEKGMFLPDRFVVS------GATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQ 173
Query: 275 ESVKEMQRNW 284
E V + W
Sbjct: 174 EQVANKMQEW 183
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 157 bits (398), Expect = 5e-43
Identities = 61/233 (26%), Positives = 97/233 (41%), Gaps = 13/233 (5%)
Query: 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDI 123
EP+ Q W+ + E + F + D PY +G LH+GH L D
Sbjct: 18 GGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGN-LHMGHALNKILKDF 76
Query: 124 LARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHP------------KITTLRNINRFR 171
+ R K MQG+ + GWD GLP EQ + G K L I +
Sbjct: 77 IVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQK 136
Query: 172 TQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANE 231
+ LG D+N T++P Y IF ++ +GL Y+ + PV W P+ + LA
Sbjct: 137 KDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEA 196
Query: 232 EVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNW 284
E+ R PVI + QW I++ +LD +++ ++ + + +
Sbjct: 197 EIEYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYN 249
Score = 43.4 bits (101), Expect = 6e-05
Identities = 22/113 (19%), Positives = 33/113 (29%), Gaps = 2/113 (1%)
Query: 465 CQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAEL 524
+A + +W+ +RQR WG P+P VF GE + E
Sbjct: 229 ILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLP-VFYAENGEIIMTKETVN 287
Query: 525 PLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW 577
+ + E + T S +ET M W S
Sbjct: 288 HV-ADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGS 339
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 145 bits (367), Expect = 2e-41
Identities = 98/203 (48%), Positives = 125/203 (61%), Gaps = 12/203 (5%)
Query: 287 RSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNI 346
RSEGAE+ F V + +I V+TTRPDT+FGAT+LV+APEHPL L + + + +
Sbjct: 1 RSEGAEILFPVEGKEV-----RIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEV 55
Query: 347 EEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAV 406
Y A RK+++ER +EKTGVF G YA NPA+GE IPIW ADYVL YGTGAIMAV
Sbjct: 56 LAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAV 115
Query: 407 PAHDTRDHEFALKFDI-SIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSC 465
PAHD RD+EFA KF + + P + E+AY G++VNS +G
Sbjct: 116 PAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPF------DGTES 169
Query: 466 QEATSKVIEWAEKTGNGKKKVNY 488
+E KVI W E+ G GK +V Y
Sbjct: 170 EEGKRKVIAWLEEKGLGKGRVTY 192
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 138 bits (349), Expect = 5e-37
Identities = 44/191 (23%), Positives = 80/191 (41%), Gaps = 10/191 (5%)
Query: 95 KFYVLDMFPYPSGAGLHVGHPLG-YTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAI 153
++ V PY +G +H GH G Y DI R R++G +V+ G D G P A+
Sbjct: 3 RYMVTSALPYANGP-IHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRAL 61
Query: 154 ETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213
+ G P+ + + + S+D+ P +YK +Q FL+ + G +
Sbjct: 62 KEGRSPREIVDEFHEQIKITFQRAKISFDFFGRTEL--PIHYKLSQEFFLKAYENGHLVK 119
Query: 214 AEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW 273
+C L + + G P+ + + +K+ ++A+RL ++ W
Sbjct: 120 KVTKQAYCEHDKMFLPDRFAIC------GRPISFRDSAHYYIKMQDFAERLKRWIEKQPW 173
Query: 274 PESVKEMQRNW 284
+VK M +W
Sbjct: 174 KPNVKNMVLSW 184
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 138 bits (347), Expect = 6e-37
Identities = 43/205 (20%), Positives = 74/205 (36%), Gaps = 3/205 (1%)
Query: 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYA 152
+ FYV Y + H+GH D LAR R+ GY G D G + A
Sbjct: 2 EKVFYVTTPIYYVNAE-PHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAA 60
Query: 153 IETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAY 212
G PK R RF+ ++ I T E + K Q + ++ + G Y
Sbjct: 61 QAAGEDPKAFVDRVSGRFKRAWDL--LGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIY 118
Query: 213 QAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD 272
E +C + +E+V+G+ G PV R+ + ++ +Y L + + +
Sbjct: 119 YGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENP 178
Query: 273 WPESVKEMQRNWIGRSEGAEMDFRV 297
+ + + D +
Sbjct: 179 DLIRPEGYRNEVLAMLAEPIGDLSI 203
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 194
Score = 91.6 bits (226), Expect = 5e-22
Identities = 37/207 (17%), Positives = 68/207 (32%), Gaps = 23/207 (11%)
Query: 287 RSEGAEMDFRVLDSDGQ-ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQN 345
RS + F V D G + D K ++TT P TI + V PE V+ +
Sbjct: 4 RSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYII 63
Query: 346 IEEYKNLASRKSDLERTELQKEKT---GVFSGCYARNPASGEAIPIWVADYVLGSYGTGA 402
E + + D ++ ++ EK A++P + D+V GTG
Sbjct: 64 AEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGC 123
Query: 403 IMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDING 462
+ P H D+ ++++ + S + + + G
Sbjct: 124 VHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGG-------------------QFEG 164
Query: 463 LSCQEATSKVIEWAEKTGNGKKKVNYK 489
+ +A V + + G K
Sbjct: 165 MFYDKANKAVTDLLTEKGALLKLDFIT 191
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus
thermophilus [TaxId: 274]}
Length = 179
Score = 71.9 bits (175), Expect = 3e-15
Identities = 31/188 (16%), Positives = 53/188 (28%), Gaps = 22/188 (11%)
Query: 295 FRVLDSDGQ-ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLA 353
F + + + ++TT P T+ G V PE+ + V E
Sbjct: 7 FPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKL 66
Query: 354 SRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRD 413
+ + A + + +ADYV GTG + PA D
Sbjct: 67 LGEGTPVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAED 126
Query: 414 HEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVI 473
E A + + + V + + E GL +EA ++
Sbjct: 127 LETARVYGLPLLKTVDEEGK--------LLVE-------------PFKGLYFREANRAIL 165
Query: 474 EWAEKTGN 481
G
Sbjct: 166 RDLRGRGF 173
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus
thermophilus [TaxId: 274]}
Length = 143
Score = 59.1 bits (142), Expect = 3e-11
Identities = 41/196 (20%), Positives = 61/196 (31%), Gaps = 58/196 (29%)
Query: 293 MDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNL 352
+ + V I + T RP+T+F + V PE
Sbjct: 6 LRYEVEGGG------FIEIATVRPETVFADQAIAVHPEDE-------------------- 39
Query: 353 ASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTR 412
+ G AR P + IPI V +GTGA+ PAHD
Sbjct: 40 ---------------RYRHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPL 84
Query: 413 DHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKV 472
D+E + + SV+ G + GLD EA K
Sbjct: 85 DYEIGERHGLKPVSVIN------------LEGRMEGERVPEALRGLDRF-----EARRKA 127
Query: 473 IEWAEKTGNGKKKVNY 488
+E + G+ K+ +Y
Sbjct: 128 VELFREAGHLVKEEDY 143
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 57.1 bits (136), Expect = 2e-09
Identities = 27/215 (12%), Positives = 57/215 (26%), Gaps = 4/215 (1%)
Query: 76 YWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNV 135
+W + + E + + YV++ PSG +HVG+ I+ R +GY V
Sbjct: 1 HWADYIADKIIRERG--EKEKYVVESGITPSGY-VHVGNFRELFTAYIVGHALRDKGYEV 57
Query: 136 LHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYY 195
H WD + + I+ + E
Sbjct: 58 RHIHMWDDYDRFRKVPRNVPQEWKDYLG-MPISEVPDPWGCHESYAEHFMRKFEEEVEKL 116
Query: 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWML 255
+ +E ++ ++++ P P +
Sbjct: 117 GIEVDLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCP 176
Query: 256 KITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEG 290
+ A+ + D + + + RS
Sbjct: 177 EHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGN 211
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 52.6 bits (125), Expect = 4e-08
Identities = 22/114 (19%), Positives = 34/114 (29%), Gaps = 8/114 (7%)
Query: 89 IDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPA 148
I + YV + Y H+GH + A D++AR R GY + +
Sbjct: 18 IHAGEVGMYVCGITVYDL---CHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKI 74
Query: 149 EQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIF 202
+ A E G R I +L A + + I
Sbjct: 75 IKRANENGESFVAMVDRMIAEMHKDFDALNILRPD-----MEPRATHHIAEIIE 123
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 32.6 bits (73), Expect = 0.11
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 93 KPKFYVLDMF-PYPSGAGLHVGHPLGYTATDILARLKRMQGYNV 135
+P +++ P+ LHVGH D +AR+ G V
Sbjct: 5 RPGVVLVEHTSVNPNKE-LHVGHLRNIALGDAIARILAYAGREV 47
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus
thermophilus [TaxId: 274]}
Length = 343
Score = 31.5 bits (70), Expect = 0.30
Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 13/130 (10%)
Query: 85 TPDEIDT---SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQ--GYNVLHPM 139
+E+ V P+ LH+GH + L ++++ Q G+ V+ +
Sbjct: 20 PEEELLAKLKEGRPLTVKLGAD-PTRPDLHLGHAVV------LRKMRQFQELGHKVVLII 72
Query: 140 G-WDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWT 198
G + + T N + Q + E+ T
Sbjct: 73 GDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLT 132
Query: 199 QWIFLQLLKR 208
++L
Sbjct: 133 FKEVVRLTSL 142
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 348
Score = 31.0 bits (69), Expect = 0.41
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 110 LHVGHPLGYTATDILARLKRMQGYNV 135
H GH LA L G+ V
Sbjct: 23 FHAGHLRSTIIGGFLANLYEKLGWEV 48
>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 88
Score = 27.6 bits (61), Expect = 1.0
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 13/93 (13%)
Query: 222 PALGTVLANEEVVDGV---SERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVK 278
+LG + N++ G G + + + +T+ DR ++ D L
Sbjct: 3 ASLGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGV-VVTKVDDRPINSADAL------- 54
Query: 279 EMQRNWIGRSEGAEMDFRVLDSDGQERDIKITV 311
++ GA + D G R +++T+
Sbjct: 55 --VAAVRSKAPGATVALTFQDPSGGSRTVQVTL 85
>d1tvfa2 e.3.1.1 (A:15-315) Pencillin binding protein 4 (PbpD),
N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Length = 301
Score = 27.9 bits (61), Expect = 2.9
Identities = 17/137 (12%), Positives = 39/137 (28%), Gaps = 7/137 (5%)
Query: 111 HVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRF 170
+ A+ M+ + ++P G + L + +TT R+
Sbjct: 138 SKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRSFAPTKYKDQERTVTTARDYAIL 197
Query: 171 RTQL-KSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLA 229
+ K D+ ++++ A +T L+ K L +
Sbjct: 198 DLHVIKETPKILDFTKQLAPTTHAVTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHT 257
Query: 230 NEEVVDGVSERGGHPVI 246
++RG +
Sbjct: 258 ------ITTKRGKFRIN 268
>d1lm4a_ d.167.1.1 (A:) Peptide deformylase {Staphylococcus aureus
[TaxId: 1280]}
Length = 194
Score = 27.9 bits (61), Expect = 3.0
Identities = 8/43 (18%), Positives = 19/43 (44%)
Query: 242 GHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNW 284
GHP +R+ + L +T+ L + + +E+ + +
Sbjct: 22 GHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRY 64
>d1lqya_ d.167.1.1 (A:) Peptide deformylase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 184
Score = 27.1 bits (59), Expect = 4.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 242 GHPVIRKPMRQWMLKITEYADRLLDDLDD 270
GHP +RK L +E R+L L D
Sbjct: 11 GHPTLRKVAEPVPLPPSEEDKRILQSLLD 39
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 25.2 bits (55), Expect = 7.5
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 246 IRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNW 284
I+KP+ +ML + E ++ + + + + R W
Sbjct: 3 IKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRW 41
>d1k8wa5 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB
{Escherichia coli [TaxId: 562]}
Length = 242
Score = 26.3 bits (57), Expect = 8.5
Identities = 39/219 (17%), Positives = 68/219 (31%), Gaps = 29/219 (13%)
Query: 115 PLGYTATDILARLKRMQGYN------VLHPMGWDAFGLPAEQYAIETGTHPKITTLRNIN 168
P G ++ D L ++KR+ N L P+ A G+ + T L +
Sbjct: 12 PQGMSSNDALQKVKRIYNANRAGHTGALDPL---ATGMLP--ICLGEATKFSQYLLDSDK 66
Query: 169 RFRTQLK--SLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGT 226
R+R + + D + +I P + Q RG Q + G
Sbjct: 67 RYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGK 126
Query: 227 VLANEEVVDGVSERGGHPVIRKPMRQWMLKITE-----------YADRLLDDL-DDLDWP 274
L R P+ + + E Y ++DDL + L
Sbjct: 127 KLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCG 186
Query: 275 ESVKEMQRNWIGRSEGAEM----DFRVLDSDGQERDIKI 309
V ++R + + M R L +++DI
Sbjct: 187 AHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPA 225
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 26.3 bits (57), Expect = 9.7
Identities = 42/206 (20%), Positives = 58/206 (28%), Gaps = 34/206 (16%)
Query: 103 PYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKIT 162
P P+G HVG AR R G ++ IE T
Sbjct: 8 PSPTGD-PHVGTAYIALFNYAWAR--RNGGRFIVR---------------IED-TDRARY 48
Query: 163 TLRNINRFRTQLKSLGFSYDWNREISTIEPAYYK-----WTQWIFLQLLKRGLAYQAEVP 217
R LK LG SYD ++ Y + Q +LLKRG AY
Sbjct: 49 VPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAY----- 103
Query: 218 VNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESV 277
L G + + + + + + RL V
Sbjct: 104 --RAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPG---TTEV 158
Query: 278 KEMQRNWIGRSEGAEMDFRVLDSDGQ 303
K+ R + D +L SDG
Sbjct: 159 KDELRGVVVYDNQEIPDVVLLKSDGY 184
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.414
Gapped
Lambda K H
0.267 0.0594 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,278,958
Number of extensions: 110934
Number of successful extensions: 284
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 33
Length of query: 577
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 487
Effective length of database: 1,171,896
Effective search space: 570713352
Effective search space used: 570713352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.3 bits)