BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008102
(577 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 116/273 (42%), Gaps = 34/273 (12%)
Query: 72 NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEA 131
N K + PLH+AA+ GH V L++ K V + A+ + T LH A
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLLQNKAK--------VNAKAK--------DDQTPLHCA 87
Query: 132 MQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSG 191
+ ++VK+L+ E+ A P G TPL++AA G + + +LE S A G
Sbjct: 88 ARIGHTNMVKLLL-ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 146
Query: 192 KTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLL---NS 248
T LH AA + G TPLH A + + I +LLL S
Sbjct: 147 FTPLHVAAK--YGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS 204
Query: 249 DKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPEC-CELVDGRGWNVLHFAMVSFD 307
S A+ T LH+AA Q ++ V ++ Y E V +G LH A
Sbjct: 205 PHSPAW-----NGYTPLHIAAKQNQVEVARSLLQYGGSANAESV--QGVTPLHLAAQEGH 257
Query: 308 ASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLA 340
A ++ LL + NL N K G TPLHL+A
Sbjct: 258 A-EMVALLLSKQANGNLGN---KSGLTPLHLVA 286
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 115/300 (38%), Gaps = 75/300 (25%)
Query: 41 VNIISRDRET-------IVSTEFVEQILE--MCPSLLQSVNAKGDAPLHVAAKCGHASVV 91
VN ++D +T I T V+ +LE P+L + G PLH+AA+ GH V
Sbjct: 73 VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA---GHTPLHIAAREGHVETV 129
Query: 92 TALIEIAKKQ---------PKELESGVESTARQMLGMTNDE------KN--TALHEAMQH 134
AL+E Q P + + L + D KN T LH A+ H
Sbjct: 130 LALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH 189
Query: 135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTA 194
+LD+VK+L+ P+S G TPL++AA++ ++ +L+ S E G T
Sbjct: 190 NNLDIVKLLLPRG-GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTP 248
Query: 195 LHAAA---------------VNINXXXXXXXXXXXXXXXXGE----------------TD 223
LH AA N N G T
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT 308
Query: 224 RYGWTPLHYASYFDRNIIAELLL------NSDKSLAYIVDNDRKMTALHLAAGQGKLRVV 277
R G+TPLH AS++ + + LL N+ L Y + LH AA QG +V
Sbjct: 309 RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGY--------SPLHQAAQQGHTDIV 360
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 95/254 (37%), Gaps = 55/254 (21%)
Query: 126 TALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVA 185
T LH A L +VK L++ A P +N ETPL+MAA G ++ +L+N V
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRG-ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 186 HEGPSGKTALHAAA---------------VNINXXXXXXXXXXXXXXXXGETD------- 223
+ +T LH AA N N G +
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 224 ---------RYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKL 274
+ G+TPLH A+ + + +AELLL D N +T LH+A L
Sbjct: 135 KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG--LTPLHVAVHHNNL 192
Query: 275 RVVEEIISY--CPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLI------N 326
+V+ ++ P G+ LH A N + R+L+ N
Sbjct: 193 DIVKLLLPRGGSPHSPAW---NGYTPLHIAAKQ----------NQVEVARSLLQYGGSAN 239
Query: 327 DKDKEGNTPLHLLA 340
+ +G TPLHL A
Sbjct: 240 AESVQGVTPLHLAA 253
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 17/127 (13%)
Query: 75 GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
G PLH+AA+ GH VV L LE+G + A+ G T LH A ++
Sbjct: 2 GRTPLHLAARNGHLEVVKLL----------LEAGADVNAKDKNG------RTPLHLAARN 45
Query: 135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTA 194
L+VVK+L++ V + + G TPL++AA G +++ +LE V + +G+T
Sbjct: 46 GHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104
Query: 195 LHAAAVN 201
LH AA N
Sbjct: 105 LHLAARN 111
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 23/125 (18%)
Query: 61 LEMCPSLLQS---VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTAR 114
LE+ LL++ VNAK G PLH+AA+ GH VV L LE+G + A+
Sbjct: 15 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL----------LEAGADVNAK 64
Query: 115 QMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKML 174
G T LH A ++ L+VVK+L++ V + + G TPL++AA G +++
Sbjct: 65 DKNG------RTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVV 117
Query: 175 TEILE 179
+LE
Sbjct: 118 KLLLE 122
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 158 GETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXX 217
G TPL++AA G +++ +LE V + +G+T LH AA N
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR--NGHLEVVKLLLEAGA 59
Query: 218 XXGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVV 277
D+ G TPLH A+ + +LLL + + N R T LHLAA G L VV
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR--TPLHLAARNGHLEVV 117
Query: 278 EEII 281
+ ++
Sbjct: 118 KLLL 121
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 126 TALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVA 185
T LH A ++ L+VVK+L++ V + + G TPL++AA G +++ +LE V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 186 HEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELL 245
+ +G+T LH AA N D+ G TPLH A+ + +LL
Sbjct: 63 AKDKNGRTPLHLAARN--GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 246 LNS 248
L +
Sbjct: 121 LEA 123
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Query: 263 TALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVR 322
T LHLAA G L VV+ ++ + D G LH A + +K LL V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV- 61
Query: 323 NLINDKDKEGNTPLHLLAALCRDSFHRIVP--WNVGGDYQAVNKQNISVKHI-TRYGFPQ 379
N KDK G TPLHL A R+ +V G D A +K + H+ R G +
Sbjct: 62 ---NAKDKNGRTPLHLAA---RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 115
Query: 380 LEQEIRELSKY 390
+ + + E Y
Sbjct: 116 VVKLLLEAGAY 126
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Query: 7 LYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPS 66
L+ AA G +E K + G V +KN +++ +R+ E V+ +LE
Sbjct: 39 LHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHL----EVVKLLLEAG-- 91
Query: 67 LLQSVNAK---GDAPLHVAAKCGHASVVTALIE 96
VNAK G PLH+AA+ GH VV L+E
Sbjct: 92 --ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 20/136 (14%)
Query: 71 VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
VNA+ G PLH+AA GH +V L L++G + A+ LG+T
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVL----------LKNGADVNAKDSLGVT------P 83
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
LH A + L++V++L+K V +++ G TPL++AA+RG +++ +L+N V +
Sbjct: 84 LHLAARRGHLEIVEVLLKNGADVN-ASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQ 142
Query: 188 GPSGKTALHAAAVNIN 203
GKTA + N N
Sbjct: 143 DKFGKTAFDISIDNGN 158
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
D GWTPLH A++F I E+LL + + + +T LHLAA +G L +VE ++
Sbjct: 44 DFTGWTPLHLAAHFGHLEIVEVLLKNGADVN--AKDSLGVTPLHLAARRGHLEIVEVLLK 101
Query: 283 YCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNT 334
+ D G+ LH A ++ LL N V N +DK G T
Sbjct: 102 NGAD-VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADV----NAQDKFGKT 148
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 105 LESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYM 164
+ +G + AR G T LH A L++V++L+K V + + G TPL++
Sbjct: 34 MANGADVNARDFTGWT------PLHLAAHFGHLEIVEVLLKNGADVN-AKDSLGVTPLHL 86
Query: 165 AAERGFEKMLTEILENCPSVAHEGPSGKTALHAAA 199
AA RG +++ +L+N V G T LH AA
Sbjct: 87 AARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAA 121
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 20/136 (14%)
Query: 71 VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
VNA+ GD PLH+AA+ GH +V L L++G + A G +T
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVL----------LKNGADVNALDFSG------STP 83
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
LH A + L++V++L+K V + + G TPL++AA+ G +++ +L+ V +
Sbjct: 84 LHLAAKRGHLEIVEVLLKYGADVN-ADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQ 142
Query: 188 GPSGKTALHAAAVNIN 203
GKTA + N N
Sbjct: 143 DKFGKTAFDISIDNGN 158
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 24/125 (19%)
Query: 61 LEMCPSLLQS---VNA---KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTAR 114
LE+ LL++ VNA G PLH+AAK GH +V L L+ G + A
Sbjct: 60 LEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVL----------LKYGADVNAD 109
Query: 115 QMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKML 174
+G +T LH A L++V++L+K V + + G+T ++ + G E L
Sbjct: 110 DTIG------STPLHLAADTGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGNED-L 161
Query: 175 TEILE 179
EIL+
Sbjct: 162 AEILQ 166
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 19/118 (16%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
D YG TPLH A+ I E+LL + + + + T LHLAA +G L +VE ++
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL--DFSGSTPLHLAAKRGHLEIVEVLLK 101
Query: 283 YCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNL------INDKDKEGNT 334
Y + D G LH A+D HL IV L +N +DK G T
Sbjct: 102 YGAD-VNADDTIGSTPLHL------AADTGHL----EIVEVLLKYGADVNAQDKFGKT 148
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 20/136 (14%)
Query: 71 VNA---KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
VNA +G PLH+AA GH +V L L+ G + AR G T
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVL----------LKHGADVNARDTDGWT------P 83
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
LH A + L++V++L+K V + + G TPL++AA+RG +++ +L++ V +
Sbjct: 84 LHLAADNGHLEIVEVLLKYGADVN-AQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQ 142
Query: 188 GPSGKTALHAAAVNIN 203
GKTA + N N
Sbjct: 143 DKFGKTAFDISIDNGN 158
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 51/118 (43%), Gaps = 19/118 (16%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
D G TPLH A++ I E+LL + D D T LHLAA G L +VE ++
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADVN-ARDTD-GWTPLHLAADNGHLEIVEVLLK 101
Query: 283 YCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNL------INDKDKEGNT 334
Y + D G LH A+D HL IV L +N +DK G T
Sbjct: 102 YGAD-VNAQDAYGLTPLHL------AADRGHL----EIVEVLLKHGADVNAQDKFGKT 148
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 17/89 (19%)
Query: 258 NDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNN 317
+D+ T LHLAA G +VE ++ + + D GW LH A +D HL
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARDTDGWTPLHLA------ADNGHL--- 93
Query: 318 YPIVRNL------INDKDKEGNTPLHLLA 340
IV L +N +D G TPLHL A
Sbjct: 94 -EIVEVLLKYGADVNAQDAYGLTPLHLAA 121
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 15/87 (17%)
Query: 222 TDRYGWTPLHYASYFDRNIIAELLL------NSDKSLAYIVDNDRKMTALHLAAGQGKLR 275
+D GWTPLH A+YF I E+LL N+D SL +T LHLAA +G L
Sbjct: 43 SDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG--------VTPLHLAADRGHLE 94
Query: 276 VVEEIISYCPECCELVDGRGWNVLHFA 302
VVE ++ + D G+ LH A
Sbjct: 95 VVEVLLKNGAD-VNANDHNGFTPLHLA 120
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 17/126 (13%)
Query: 78 PLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSL 137
PLH+AA GH +V L L++G + A LG+T LH A L
Sbjct: 50 PLHLAAYFGHLEIVEVL----------LKNGADVNADDSLGVT------PLHLAADRGHL 93
Query: 138 DVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHA 197
+VV++L+K V + + G TPL++AA G +++ +L++ V + GKTA
Sbjct: 94 EVVEVLLKNGADVN-ANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 198 AAVNIN 203
+ N N
Sbjct: 153 SIDNGN 158
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 126 TALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVA 185
T LH A L++V++L+K V + + G TPL++AA+RG +++ +L+N V
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVN-ADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Query: 186 HEGPSGKTALHAAA 199
+G T LH AA
Sbjct: 108 ANDHNGFTPLHLAA 121
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 130 EAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGP 189
EA + D V+IL+ V S + G TPL++AA G +++ +L+N V +
Sbjct: 20 EAARAGQDDEVRILMANGADVNASDH-VGWTPLHLAAYFGHLEIVEVLLKNGADVNADDS 78
Query: 190 SGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLL 246
G T LH AA D G+TPLH A+ I E+LL
Sbjct: 79 LGVTPLHLAA--DRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLL 133
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 17/131 (12%)
Query: 68 LQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
+ + ++ G PLH+AA+ GH VV L L G + A+ + + T
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLL----------LSQGADPNAK------DSDGKTP 73
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
LH A ++ +VVK+L+ + A P + + G+TPL++AAE G ++++ +L
Sbjct: 74 LHLAAENGHKEVVKLLLSQG-ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTS 132
Query: 188 GPSGKTALHAA 198
G+T L A
Sbjct: 133 DSDGRTPLDLA 143
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 94 LIEIAKKQPKE-----LESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDP 148
LIE A+ K+ LE+G + A ++ + T LH A ++ +VVK+L+ +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNA------SDSDGKTPLHLAAENGHKEVVKLLLSQG- 60
Query: 149 AVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXX 208
A P + + G+TPL++AAE G ++++ +L + GKT LH AA N +
Sbjct: 61 ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVK 120
Query: 209 XXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELL 245
++D G TPL A + +LL
Sbjct: 121 LLLSQGADPNTSDSD--GRTPLDLAREHGNEEVVKLL 155
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 162 LYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGE 221
L AAE G + + ++LEN V GKT LH AA N + +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 222 TDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEII 281
+D G TPLH A+ + +LLL S + D+D K T LHLAA G VV+ ++
Sbjct: 68 SD--GKTPLHLAAENGHKEVVKLLL-SQGADPNAKDSDGK-TPLHLAAENGHKEVVKLLL 123
Query: 282 S 282
S
Sbjct: 124 S 124
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 257 DNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLN 316
D+D K T LHLAA G VV+ ++S + D G LH A + +K LL+
Sbjct: 34 DSDGK-TPLHLAAENGHKEVVKLLLSQGADP-NAKDSDGKTPLHLAAENGHKEVVKLLLS 91
Query: 317 NYPIVRNLINDKDKEGNTPLHLLA 340
N KD +G TPLHL A
Sbjct: 92 QGADP----NAKDSDGKTPLHLAA 111
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
L EA ++ + D VK L+ E+ A P +++ G TPL+ AAE G ++++ +L +
Sbjct: 8 LIEAAENGNKDRVKDLL-ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 188 GPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLLN 247
G+T LH AA N + ++D G TPLHYA+ I +LLL
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD--GRTPLHYAAENGHKEIVKLLL- 123
Query: 248 SDKSLAYIVDNDRKMTALHLAAGQGKLRVVE 278
S + D+D + T L LA G +V+
Sbjct: 124 SKGADPNTSDSDGR-TPLDLAREHGNEEIVK 153
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 17/127 (13%)
Query: 72 NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEA 131
++ G PLH AA+ GH +V L L G + A+ + + T LH A
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLL----------LSKGADPNAK------DSDGRTPLHYA 77
Query: 132 MQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSG 191
++ ++VK+L+ + A P + + G TPL+ AAE G ++++ +L G
Sbjct: 78 AENGHKEIVKLLLSKG-ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDG 136
Query: 192 KTALHAA 198
+T L A
Sbjct: 137 RTPLDLA 143
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 68 LQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
+ + + G PLH+AA GH +V L L++G + A LG +T
Sbjct: 40 VNAADVVGWTPLHLAAYWGHLEIVEVL----------LKNGADVNAYDTLG------STP 83
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
LH A L++V++L+K V + G TPL++AA RG +++ +L+ V +
Sbjct: 84 LHLAAHFGHLEIVEVLLKNGADVNAKDDN-GITPLHLAANRGHLEIVEVLLKYGADVNAQ 142
Query: 188 GPSGKTALHAAAVNIN 203
GKTA + N N
Sbjct: 143 DKFGKTAFDISINNGN 158
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
D G TPLH A++F I E+LL + + +D +T LHLAA +G L +VE ++
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGADVN--AKDDNGITPLHLAANRGHLEIVEVLLK 134
Query: 283 Y 283
Y
Sbjct: 135 Y 135
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSL-AYIVDNDRKMTALHLAAGQGKLRVVEEII 281
D GWTPLH A+Y+ I E+LL + + AY + T LHLAA G L +VE ++
Sbjct: 44 DVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY---DTLGSTPLHLAAHFGHLEIVEVLL 100
Query: 282 SYCPECCELVDGRGWNVLHFA 302
+ D G LH A
Sbjct: 101 KNGAD-VNAKDDNGITPLHLA 120
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 17/145 (11%)
Query: 59 QILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLG 118
+IL + + + + G PLH+AA GH +V L L++G + A + G
Sbjct: 31 RILMANGADVNATDNDGYTPLHLAASNGHLEIVEVL----------LKNGADVNASDLTG 80
Query: 119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL 178
+T LH A L++V++L+K V N G TPL++AA+ G +++ +L
Sbjct: 81 IT------PLHLAAATGHLEIVEVLLKHGADVNAYDN-DGHTPLHLAAKYGHLEIVEVLL 133
Query: 179 ENCPSVAHEGPSGKTALHAAAVNIN 203
++ V + GKTA + N N
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGN 158
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 222 TDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDND-RKMTALHLAAGQGKLRVVEEI 280
TD G+TPLH A+ I E+LL K+ A + +D +T LHLAA G L +VE +
Sbjct: 43 TDNDGYTPLHLAASNGHLEIVEVLL---KNGADVNASDLTGITPLHLAAATGHLEIVEVL 99
Query: 281 ISYCPECCELVDGRGWNVLHFA 302
+ + + D G LH A
Sbjct: 100 LKHGAD-VNAYDNDGHTPLHLA 120
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 65/159 (40%), Gaps = 40/159 (25%)
Query: 130 EAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGP 189
EA + D V+IL+ V +T+ G TPL++AA G +++ +L+N V
Sbjct: 20 EAARAGQDDEVRILMANGADVN-ATDNDGYTPLHLAASNGHLEIVEVLLKNGADV----- 73
Query: 190 SGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLLNSD 249
+D G TPLH A+ I E+LL
Sbjct: 74 ------------------------------NASDLTGITPLHLAAATGHLEIVEVLLKHG 103
Query: 250 KSL-AYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPEC 287
+ AY DND T LHLAA G L +VE ++ + +
Sbjct: 104 ADVNAY--DNDGH-TPLHLAAKYGHLEIVEVLLKHGADV 139
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 96 EIAKKQPKELESGVESTARQMLG------MTNDEKNTALHEAMQHRSLDVVKILIKEDPA 149
++ KK + +G + R ++ T+++ T LH A + L++V++L+K
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD 72
Query: 150 VPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAA 199
V S + G TPL++AA G +++ +L++ V G T LH AA
Sbjct: 73 VNAS-DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAA 121
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 16/84 (19%)
Query: 55 EFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTAR 114
E VE +L+ + + + G PLH+AAK GH +V L L+ G + A+
Sbjct: 94 EIVEVLLKHGADV-NAYDNDGHTPLHLAAKYGHLEIVEVL----------LKHGADVNAQ 142
Query: 115 QMLGMTN-----DEKNTALHEAMQ 133
G T D N L E +Q
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEILQ 166
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 20/136 (14%)
Query: 71 VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
VNAK G PLH+AA+ GH +V L L++G + A+ G T
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVL----------LKAGADVNAKDKDGYT------P 83
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
LH A + L++V++L+K V + + G TPL++AA G +++ +L+ V +
Sbjct: 84 LHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 142
Query: 188 GPSGKTALHAAAVNIN 203
GKTA + N N
Sbjct: 143 DKFGKTAFDISIDNGN 158
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 42/119 (35%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRK-MTALHLAAGQGKLRVVEEII 281
D+ G+TPLH A+ I E+LL K+ A + D+ T LHLAA +G L +VE ++
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 100
Query: 282 SYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLA 340
+ +N KDK+G TPLHL A
Sbjct: 101 KAGAD--------------------------------------VNAKDKDGYTPLHLAA 121
Score = 35.4 bits (80), Expect = 0.095, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 162 LYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGE 221
L AA G + + ++ N V + G T LH AA + +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 222 TDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRK-MTALHLAAGQGKLRVVEEI 280
D G+TPLH A+ I E+LL K+ A + D+ T LHLAA +G L +VE +
Sbjct: 78 KD--GYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 132
Query: 281 I 281
+
Sbjct: 133 L 133
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 325 INDKDKEGNTPLHLLAALCRDSFHRIVP--WNVGGDYQAVNKQNISVKHI 372
+N KDK+G TPLHL A R+ IV G D A +K + H+
Sbjct: 40 VNAKDKDGYTPLHLAA---REGHLEIVEVLLKAGADVNAKDKDGYTPLHL 86
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 325 INDKDKEGNTPLHLLAALCRDSFHRIVP--WNVGGDYQAVNKQNISVKHI 372
+N KDK+G TPLHL A R+ IV G D A +K + H+
Sbjct: 73 VNAKDKDGYTPLHLAA---REGHLEIVEVLLKAGADVNAKDKDGYTPLHL 119
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 17/145 (11%)
Query: 59 QILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLG 118
+IL + + + + G PLH+AA GH +V L L+ G + A + G
Sbjct: 31 RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVL----------LKHGADVDASDVFG 80
Query: 119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL 178
T LH A L++V++L+K V + + G TPL++AA+ G+ +++ +L
Sbjct: 81 YT------PLHLAAYWGHLEIVEVLLKNGADVN-AMDSDGMTPLHLAAKWGYLEIVEVLL 133
Query: 179 ENCPSVAHEGPSGKTALHAAAVNIN 203
++ V + GKTA + N N
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGN 158
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 38/160 (23%)
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
L EA + D V+IL+ V + N G TPL++AA G +++ +L+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADN-TGTTPLHLAAYSGHLEIVEVLLK-------- 68
Query: 188 GPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLLN 247
H A V+ +D +G+TPLH A+Y+ I E+LL
Sbjct: 69 --------HGADVD-------------------ASDVFGYTPLHLAAYWGHLEIVEVLLK 101
Query: 248 SDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPEC 287
+ + + D+D MT LHLAA G L +VE ++ + +
Sbjct: 102 NGADVNAM-DSD-GMTPLHLAAKWGYLEIVEVLLKHGADV 139
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 263 TALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVR 322
T LHLAA G L +VE ++ + + + D G+ LH A ++ LL N V
Sbjct: 49 TPLHLAAYSGHLEIVEVLLKHGADV-DASDVFGYTPLHLAAYWGHLEIVEVLLKNGADV- 106
Query: 323 NLINDKDKEGNTPLHLLA 340
N D +G TPLHL A
Sbjct: 107 ---NAMDSDGMTPLHLAA 121
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Query: 75 GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
G +PLHVAA G A ++ P L+ G + AR N ++ LH A Q
Sbjct: 86 GSSPLHVAALHGRADLI----------PLLLKHGANAGAR------NADQAVPLHLACQQ 129
Query: 135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTA 194
VVK L+ + A P + G TPL A G +++ +L++ S+ G TA
Sbjct: 130 GHFQVVKCLLDSN-AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTA 188
Query: 195 LHAAAV 200
LH A +
Sbjct: 189 LHEAVI 194
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 23/129 (17%)
Query: 39 LHVNIISRDRETIVSTEFVEQILEMCPSLLQ------SVNAKGDAPLHVAAKCGHASVVT 92
L VN+ S+D + + + ++ P LL+ + NA PLH+A + GH VV
Sbjct: 77 LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVK 136
Query: 93 ALIEIAKKQPKELESG-------VESTARQMLGM----------TNDEKNTALHEAMQHR 135
L++ K K+ SG +++ + +N++ NTALHEA+ +
Sbjct: 137 CLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEK 196
Query: 136 SLDVVKILI 144
+ VV++L+
Sbjct: 197 HVFVVELLL 205
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 20/137 (14%)
Query: 70 SVNAKGDA---PLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNT 126
VNA+ D+ PLH+AA GH +V L L+ G + A +G +T
Sbjct: 39 DVNAEDDSGKTPLHLAAIKGHLEIVEVL----------LKHGADVNAADKMG------DT 82
Query: 127 ALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAH 186
LH A + L++V++L+K V +T+ G TPL++AA+ G +++ +L+ V
Sbjct: 83 PLHLAALYGHLEIVEVLLKNGADVN-ATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNA 141
Query: 187 EGPSGKTALHAAAVNIN 203
+ GKTA + N N
Sbjct: 142 QDKFGKTAFDISIDNGN 158
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 162 LYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGE 221
L AA G + + ++ N V E SGKT LH AA I
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAA--IKGHLEIVEVLLKHGADVNA 75
Query: 222 TDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDR-KMTALHLAAGQGKLRVVEEI 280
D+ G TPLH A+ + I E+LL K+ A + D T LHLAA G L +VE +
Sbjct: 76 ADKMGDTPLHLAALYGHLEIVEVLL---KNGADVNATDTYGFTPLHLAADAGHLEIVEVL 132
Query: 281 ISYCPEC 287
+ Y +
Sbjct: 133 LKYGADV 139
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 19/125 (15%)
Query: 55 EFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTAR 114
E VE +L+ + + + GD PLH+AA GH +V L L++G + A
Sbjct: 61 EIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEVL----------LKNGADVNAT 109
Query: 115 QMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKML 174
G T LH A L++V++L+K V + + G+T ++ + G E L
Sbjct: 110 DTYGF------TPLHLAADAGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGNED-L 161
Query: 175 TEILE 179
EIL+
Sbjct: 162 AEILQ 166
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 257 DNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLN 316
++D T LHLAA +G L +VE ++ + + D G LH A + ++ LL
Sbjct: 43 EDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEVLLK 101
Query: 317 NYPIVRNLINDKDKEGNTPLHLLA 340
N V N D G TPLHL A
Sbjct: 102 NGADV----NATDTYGFTPLHLAA 121
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 20/136 (14%)
Query: 71 VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
VNAK G PLH+AA+ GH +V L L++G + A+ G T
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVL----------LKAGADVNAKDKDGY------TP 71
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
LH A + L++V++L+K V + + G TPL++AA G +++ +L+ V +
Sbjct: 72 LHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 130
Query: 188 GPSGKTALHAAAVNIN 203
GKT A N N
Sbjct: 131 DKFGKTPFDLAIDNGN 146
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 42/119 (35%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRK-MTALHLAAGQGKLRVVEEII 281
D+ G+TPLH A+ I E+LL K+ A + D+ T LHLAA +G L +VE ++
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 88
Query: 282 SYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLA 340
+ +N KDK+G TPLHL A
Sbjct: 89 KAGAD--------------------------------------VNAKDKDGYTPLHLAA 109
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 162 LYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGE 221
L AA G + + ++ N V + G T LH AA + +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 222 TDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRK-MTALHLAAGQGKLRVVEEI 280
D G+TPLH A+ I E+LL K+ A + D+ T LHLAA +G L +VE +
Sbjct: 66 KD--GYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 281 I 281
+
Sbjct: 121 L 121
Score = 28.5 bits (62), Expect = 9.5, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 325 INDKDKEGNTPLHLLAALCRDSFHRIVP--WNVGGDYQAVNKQNISVKHI 372
+N KDK+G TPLHL A R+ IV G D A +K + H+
Sbjct: 28 VNAKDKDGYTPLHLAA---REGHLEIVEVLLKAGADVNAKDKDGYTPLHL 74
Score = 28.5 bits (62), Expect = 9.5, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 325 INDKDKEGNTPLHLLAALCRDSFHRIVP--WNVGGDYQAVNKQNISVKHI 372
+N KDK+G TPLHL A R+ IV G D A +K + H+
Sbjct: 61 VNAKDKDGYTPLHLAA---REGHLEIVEVLLKAGADVNAKDKDGYTPLHL 107
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 68 LQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
+ + ++ G PLH AA+ GH VV LI G + A+ + + T
Sbjct: 30 VNASDSDGRTPLHHAAENGHKEVVKLLI----------SKGADVNAK------DSDGRTP 73
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
LH A ++ +VVK+LI + V + + G TPL+ AAE G ++++ ++ V
Sbjct: 74 LHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS 132
Query: 188 GPSGKTALHAA 198
G+T L A
Sbjct: 133 DSDGRTPLDLA 143
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
L EA ++ + D VK LI E+ A +++ G TPL+ AAE G ++++ ++ V +
Sbjct: 8 LIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 188 GPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLLN 247
G+T LH AA N + ++D G TPLH+A+ + +LL++
Sbjct: 67 DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD--GRTPLHHAAENGHKEVVKLLIS 124
Query: 248 SDKSLAYIVDNDRKMTALHLAAGQGKLRVVE 278
+ D+D + T L LA G VV+
Sbjct: 125 KGADVN-TSDSDGR-TPLDLAREHGNEEVVK 153
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 14/157 (8%)
Query: 94 LIEIAKKQPKE-----LESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDP 148
LIE A+ K+ +E+G + A ++ + T LH A ++ +VVK+LI +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNA------SDSDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 149 AVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXX 208
V + + G TPL+ AAE G ++++ ++ V + G+T LH AA N +
Sbjct: 62 DVN-AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVK 120
Query: 209 XXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELL 245
++D G TPL A + +LL
Sbjct: 121 LLISKGADVNTSDSD--GRTPLDLAREHGNEEVVKLL 155
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 17/145 (11%)
Query: 59 QILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLG 118
+IL + + + +A G PLH+AA GH +V L L+ G + A ++G
Sbjct: 31 RILMANGADVNATDASGLTPLHLAATYGHLEIVEVL----------LKHGADVNAIDIMG 80
Query: 119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL 178
+T LH A L++V++L+K V + + G+TPL++AA G +++ +L
Sbjct: 81 ------STPLHLAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 179 ENCPSVAHEGPSGKTALHAAAVNIN 203
++ V + GKTA + N N
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGN 158
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 63/158 (39%), Gaps = 38/158 (24%)
Query: 130 EAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGP 189
EA + D V+IL+ V +T+ G TPL++AA G +++ +L+
Sbjct: 20 EAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLK---------- 68
Query: 190 SGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLLNSD 249
H A VN D G TPLH A+ I E+LL
Sbjct: 69 ------HGADVN-------------------AIDIMGSTPLHLAALIGHLEIVEVLLKHG 103
Query: 250 KSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPEC 287
+ + + T LHLAA G L +VE ++ + +
Sbjct: 104 ADVNAV--DTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 19/125 (15%)
Query: 55 EFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTAR 114
E VE +L+ + +++ G PLH+AA GH +V L L+ G + A
Sbjct: 61 EIVEVLLKHGADV-NAIDIMGSTPLHLAALIGHLEIVEVL----------LKHGADVNAV 109
Query: 115 QMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKML 174
G +T LH A L++V++L+K V + + G+T ++ + G E L
Sbjct: 110 DTWG------DTPLHLAAIMGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNED-L 161
Query: 175 TEILE 179
EIL+
Sbjct: 162 AEILQ 166
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 262 MTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIV 321
+T LHLAA G L +VE ++ + + +D G LH A L+ + IV
Sbjct: 48 LTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIMGSTPLHLAA----------LIGHLEIV 96
Query: 322 RNL------INDKDKEGNTPLHLLA 340
L +N D G+TPLHL A
Sbjct: 97 EVLLKHGADVNAVDTWGDTPLHLAA 121
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 110/268 (41%), Gaps = 74/268 (27%)
Query: 77 APLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRS 136
+PLH AA+ GH + L++ A + ++++ T L EA ++
Sbjct: 13 SPLHAAAEAGHVDICHMLVQ----------------AGANIDTCSEDQRTPLMEAAENNH 56
Query: 137 LDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALH 196
L+ VK LIK V + G T L++AA++G +++ +L N
Sbjct: 57 LEAVKYLIKAGALVD-PKDAEGSTCLHLAAKKGHYEVVQYLLSN---------------- 99
Query: 197 AAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIV 256
+++N D GWTP+ +A+ + + +LLL S S I
Sbjct: 100 -GQMDVNC-----------------QDDGGWTPMIWATEYKHVDLVKLLL-SKGSDINIR 140
Query: 257 DNDRKMTALHLAAGQGKLRVVEEIISYCPECCEL--VDGRGWNVLHFAMVSFDASDLKHL 314
DN+ + LH AA G + + E +++ C+L V+ G + LH A
Sbjct: 141 DNEENI-CLHWAAFSGCVDIAEILLA---AKCDLHAVNIHGDSPLHIAARE--------- 187
Query: 315 LNNYPIV------RNLINDKDKEGNTPL 336
N Y V + + K+KEG TPL
Sbjct: 188 -NRYDCVVLFLSRDSDVTLKNKEGETPL 214
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 19/154 (12%)
Query: 66 SLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESG-----VESTARQMLGMT 120
+L+ +A+G LH+AAK GH VV L+ + + G + +T + + +
Sbjct: 68 ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV 127
Query: 121 -------------NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAE 167
++E+N LH A +D+ +IL+ + ++ N G++PL++AA
Sbjct: 128 KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAAR 186
Query: 168 RGFEKMLTEILENCPSVAHEGPSGKTALHAAAVN 201
+ L V + G+T L A++N
Sbjct: 187 ENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLN 220
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 17/105 (16%)
Query: 75 GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
G PLH+AA+ GH VV L LE+G + A+ G T LH A ++
Sbjct: 2 GRTPLHLAARNGHLEVVKLL----------LEAGADVNAKDKNG------RTPLHLAARN 45
Query: 135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE 179
L+VVK+L++ V + + G TPL++AA G +++ +LE
Sbjct: 46 GHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 36.6 bits (83), Expect = 0.036, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 158 GETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXX 217
G TPL++AA G +++ +LE V + +G+T LH AA N
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR--NGHLEVVKLLLEAGA 59
Query: 218 XXGETDRYGWTPLHYASYFDRNIIAELLLNS 248
D+ G TPLH A+ + +LLL +
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 263 TALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVR 322
T LHLAA G L VV+ ++ + D G LH A + +K LL V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV- 61
Query: 323 NLINDKDKEGNTPLHLLA 340
N KDK G TPLHL A
Sbjct: 62 ---NAKDKNGRTPLHLAA 76
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 190 SGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLLNSD 249
+G+T LH AA N D+ G TPLH A+ + +LLL +
Sbjct: 1 NGRTPLHLAARN--GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 250 KSLAYIVDNDRKMTALHLAAGQGKLRVVEEII 281
+ N R T LHLAA G L VV+ ++
Sbjct: 59 ADVNAKDKNGR--TPLHLAARNGHLEVVKLLL 88
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 96/224 (42%), Gaps = 53/224 (23%)
Query: 120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS-TNGCGETPLYMAAERGFEKMLTEIL 178
T+ + TALH A ++V+ L++ VP + + G +PL++AA G ++++ +L
Sbjct: 37 TDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 179 ENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDR 238
GK A AVN N G TPLHYA+ +R
Sbjct: 95 ------------GKGA-QVNAVNQN----------------------GCTPLHYAASKNR 119
Query: 239 NIIAELLL----NSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGR 294
+ IA +LL N D Y + TA+H AA +G L+++ I+ Y + D
Sbjct: 120 HEIAVMLLEGGANPDAKDHY------EATAMHRAAAKGNLKMI-HILLYYKASTNIQDTE 172
Query: 295 GWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
G LH A + K L++ I ++KE TPL +
Sbjct: 173 GNTPLHLACDEERVEEAKLLVSQGAS----IYIENKEEKTPLQV 212
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 89/221 (40%), Gaps = 32/221 (14%)
Query: 55 EFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTAR 114
E E IL SL + LH A GH +V L++
Sbjct: 22 ELKESILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------------------ 62
Query: 115 QMLGMTNDEKNTA----LHEAMQHRSLDVVKILIKEDPAV-PYSTNGCGETPLYMAAERG 169
LG+ ++K+ A LH A ++VK L+ + V + NGC TPL+ AA +
Sbjct: 63 --LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGC--TPLHYAASKN 118
Query: 170 FEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTP 229
++ +LE + + TA+H AA N +T+ G TP
Sbjct: 119 RHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTE--GNTP 176
Query: 230 LHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAG 270
LH A +R A+LL++ S+ ++N + T L +A G
Sbjct: 177 LHLACDEERVEEAKLLVSQGASI--YIENKEEKTPLQVAKG 215
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 45/124 (36%), Gaps = 40/124 (32%)
Query: 248 SDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFD 307
+DKSLA D D + TALH A G +VE ++
Sbjct: 29 ADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQL------------------------ 63
Query: 308 ASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNI 367
P+ NDKD G +PLH+ A+ RD + + G AVN+
Sbjct: 64 ---------GVPV-----NDKDDAGWSPLHIAASAGRDEIVKAL-LGKGAQVNAVNQNGC 108
Query: 368 SVKH 371
+ H
Sbjct: 109 TPLH 112
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 96/224 (42%), Gaps = 53/224 (23%)
Query: 120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS-TNGCGETPLYMAAERGFEKMLTEIL 178
T+ + TALH A ++V+ L++ VP + + G +PL++AA G ++++ +L
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 179 ENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDR 238
GK A AVN N G TPLHYA+ +R
Sbjct: 94 ------------GKGA-QVNAVNQN----------------------GCTPLHYAASKNR 118
Query: 239 NIIAELLL----NSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGR 294
+ IA +LL N D Y + TA+H AA +G L+++ I+ Y + D
Sbjct: 119 HEIAVMLLEGGANPDAKDHY------EATAMHRAAAKGNLKMI-HILLYYKASTNIQDTE 171
Query: 295 GWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
G LH A + K L++ I ++KE TPL +
Sbjct: 172 GNTPLHLACDEERVEEAKLLVSQGAS----IYIENKEEKTPLQV 211
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 89/221 (40%), Gaps = 32/221 (14%)
Query: 55 EFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTAR 114
E E IL SL + LH A GH +V L++
Sbjct: 21 ELKESILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------------------ 61
Query: 115 QMLGMTNDEKNTA----LHEAMQHRSLDVVKILIKEDPAV-PYSTNGCGETPLYMAAERG 169
LG+ ++K+ A LH A ++VK L+ + V + NGC TPL+ AA +
Sbjct: 62 --LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGC--TPLHYAASKN 117
Query: 170 FEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTP 229
++ +LE + + TA+H AA N +T+ G TP
Sbjct: 118 RHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTE--GNTP 175
Query: 230 LHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAG 270
LH A +R A+LL++ S+ ++N + T L +A G
Sbjct: 176 LHLACDEERVEEAKLLVSQGASI--YIENKEEKTPLQVAKG 214
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 45/124 (36%), Gaps = 40/124 (32%)
Query: 248 SDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFD 307
+DKSLA D D + TALH A G +VE ++
Sbjct: 28 ADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQL------------------------ 62
Query: 308 ASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNI 367
P+ NDKD G +PLH+ A+ RD + + G AVN+
Sbjct: 63 ---------GVPV-----NDKDDAGWSPLHIAASAGRDEIVKAL-LGKGAQVNAVNQNGC 107
Query: 368 SVKH 371
+ H
Sbjct: 108 TPLH 111
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 86/224 (38%), Gaps = 86/224 (38%)
Query: 120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS-TNGCGETPLYMAAERGFEKMLTEIL 178
T+ + TALH A ++V+ L++ VP + + G +PL++AA G ++++ +L
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 179 ENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDR 238
H AVN N G TPLHYA+ +R
Sbjct: 94 -------------VKGAHVNAVNQN----------------------GCTPLHYAASKNR 118
Query: 239 NIIAELLL----NSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGR 294
+ IA +LL N D Y TA+H AA +G L++V
Sbjct: 119 HEIAVMLLEGGANPDAKDHY------DATAMHRAAAKGNLKMV----------------- 155
Query: 295 GWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
H+L Y N+ +D EGNTPLHL
Sbjct: 156 ------------------HILLFYKASTNI---QDTEGNTPLHL 178
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 88/221 (39%), Gaps = 32/221 (14%)
Query: 55 EFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTAR 114
E E+IL SL + LH A GH +V L++
Sbjct: 21 ELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------------------ 61
Query: 115 QMLGMTNDEKNTA----LHEAMQHRSLDVVK-ILIKEDPAVPYSTNGCGETPLYMAAERG 169
LG+ ++K+ A LH A ++VK +L+K + NGC TPL+ AA +
Sbjct: 62 --LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC--TPLHYAASKN 117
Query: 170 FEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTP 229
++ +LE + + TA+H AA N +T+ G TP
Sbjct: 118 RHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE--GNTP 175
Query: 230 LHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAG 270
LH A +R A+ L+ S+ ++N + T L +A G
Sbjct: 176 LHLACDEERVEEAKFLVTQGASI--YIENKEEKTPLQVAKG 214
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 61/148 (41%), Gaps = 24/148 (16%)
Query: 54 TEFVEQILEMCPSLLQSVNAKGDA---PLHVAAKCGHASVVTALIEIAKKQPKELESGVE 110
TE VE +L+ L VN K DA PLH+AA G +V AL L G
Sbjct: 53 TEIVEFLLQ----LGVPVNDKDDAGWSPLHIAASAGXDEIVKAL----------LVKGAH 98
Query: 111 STARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGF 170
A N T LH A ++ +L+ E A P + + T ++ AA +G
Sbjct: 99 VNA------VNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAKDHYDATAMHRAAAKGN 151
Query: 171 EKMLTEILENCPSVAHEGPSGKTALHAA 198
KM+ +L S + G T LH A
Sbjct: 152 LKMVHILLFYKASTNIQDTEGNTPLHLA 179
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 20/131 (15%)
Query: 71 VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
VNAK G PLH+AA+ GH +V L L++G + A+ G T
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVL----------LKAGADVNAKDKDGY------TP 71
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
LH A + L++V++L+K V + + G TPL++AA G +++ +L+ V +
Sbjct: 72 LHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 130
Query: 188 GPSGKTALHAA 198
GKT A
Sbjct: 131 DKFGKTPFDLA 141
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 42/119 (35%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRK-MTALHLAAGQGKLRVVEEII 281
D+ G+TPLH A+ I E+LL K+ A + D+ T LHLAA +G L +VE ++
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 88
Query: 282 SYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLA 340
+ +N KDK+G TPLHL A
Sbjct: 89 KAGAD--------------------------------------VNAKDKDGYTPLHLAA 109
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 162 LYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGE 221
L AA G + + ++ N V + G T LH AA + +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 222 TDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRK-MTALHLAAGQGKLRVVEEI 280
D G+TPLH A+ I E+LL K+ A + D+ T LHLAA +G L +VE +
Sbjct: 66 KD--GYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 281 I 281
+
Sbjct: 121 L 121
Score = 28.5 bits (62), Expect = 9.5, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 325 INDKDKEGNTPLHLLAALCRDSFHRIVP--WNVGGDYQAVNKQNISVKHI 372
+N KDK+G TPLHL A R+ IV G D A +K + H+
Sbjct: 28 VNAKDKDGYTPLHLAA---REGHLEIVEVLLKAGADVNAKDKDGYTPLHL 74
Score = 28.5 bits (62), Expect = 9.5, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 325 INDKDKEGNTPLHLLAALCRDSFHRIVP--WNVGGDYQAVNKQNISVKHI 372
+N KDK+G TPLHL A R+ IV G D A +K + H+
Sbjct: 61 VNAKDKDGYTPLHLAA---REGHLEIVEVLLKAGADVNAKDKDGYTPLHL 107
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 68 LQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
+ + ++ G PLH AAK GH +V LI G + A+ + + T
Sbjct: 30 VNASDSDGRTPLHYAAKEGHKEIVKLLI----------SKGADVNAK------DSDGRTP 73
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
LH A + ++VK+LI + V + + G TPL+ AA+ G ++++ ++ V
Sbjct: 74 LHYAAKEGHKEIVKLLISKGADVN-AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTS 132
Query: 188 GPSGKTALHAA 198
G+T L A
Sbjct: 133 DSDGRTPLDLA 143
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
L EA ++ + D VK LI E+ A +++ G TPL+ AA+ G ++++ ++ V +
Sbjct: 8 LIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 188 GPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLLN 247
G+T LH AA + ++D G TPLHYA+ I +LL++
Sbjct: 67 DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD--GRTPLHYAAKEGHKEIVKLLIS 124
Query: 248 SDKSLAYIVDNDRKMTALHLAAGQGKLRVVE 278
+ D+D + T L LA G +V+
Sbjct: 125 KGADVN-TSDSDGR-TPLDLAREHGNEEIVK 153
Score = 32.0 bits (71), Expect = 0.94, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 257 DNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLN 316
D+D + T LH AA +G +V+ +IS + D G LH+A +K L++
Sbjct: 34 DSDGR-TPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLIS 91
Query: 317 NYPIVRNLINDKDKEGNTPLHLLA 340
V N KD +G TPLH A
Sbjct: 92 KGADV----NAKDSDGRTPLHYAA 111
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 18/102 (17%)
Query: 78 PLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSL 137
PLH+AA GHA++V L L+ G + A+ ML MT ALH A +H
Sbjct: 70 PLHMAASEGHANIVEVL----------LKHGADVNAKDMLKMT------ALHWATEHNHQ 113
Query: 138 DVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE 179
+VV++LIK V + C +T ++ + G E L EIL+
Sbjct: 114 EVVELLIKYGADVHTQSKFC-KTAFDISIDNGNED-LAEILQ 153
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 222 TDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEII 281
TD G +PLH A+ + E+LL + S DR T LH+AA +G +VE ++
Sbjct: 30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR--TPLHMAASEGHANIVEVLL 87
Query: 282 SYCPEC 287
+ +
Sbjct: 88 KHGADV 93
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 64/159 (40%), Gaps = 41/159 (25%)
Query: 130 EAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGP 189
EA + D V+IL+ P++T+ G +PL++AA+ G TE+L V+ +
Sbjct: 8 EAARAGQDDEVRILMAN--GAPFTTDWLGTSPLHLAAQYGHFST-TEVLLRA-GVSRDAR 63
Query: 190 SGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLLNSD 249
+ + DR TPLH A+ I E+LL
Sbjct: 64 T------------------------------KVDR---TPLHMAASEGHANIVEVLL--- 87
Query: 250 KSLAYIVDNDR-KMTALHLAAGQGKLRVVEEIISYCPEC 287
K A + D KMTALH A VVE +I Y +
Sbjct: 88 KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 17/136 (12%)
Query: 59 QILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLG 118
+IL + + + +A G PLH+AA GH +V L L+ G + A + G
Sbjct: 31 RILMANGADVNATDASGLTPLHLAATYGHLEIVEVL----------LKHGADVNAIDIXG 80
Query: 119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL 178
+T LH A L++V++L+K V + + G+TPL++AA G +++ +L
Sbjct: 81 ------STPLHLAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 179 ENCPSVAHEGPSGKTA 194
++ V + GKTA
Sbjct: 134 KHGADVNAQDKFGKTA 149
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 130 EAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGP 189
EA + D V+IL+ V +T+ G TPL++AA G +++ +L++ V
Sbjct: 20 EAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI 78
Query: 190 SGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLL 246
G T LH AA + D +G TPLH A+ I E+LL
Sbjct: 79 XGSTPLHLAA--LIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 19/125 (15%)
Query: 55 EFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTAR 114
E VE +L+ + +++ G PLH+AA GH +V L L+ G + A
Sbjct: 61 EIVEVLLKHGADV-NAIDIXGSTPLHLAALIGHLEIVEVL----------LKHGADVNAV 109
Query: 115 QMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKML 174
G +T LH A L++V++L+K V + + G+T ++ + G E L
Sbjct: 110 DTWG------DTPLHLAAIMGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNED-L 161
Query: 175 TEILE 179
EIL+
Sbjct: 162 AEILQ 166
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 262 MTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIV 321
+T LHLAA G L +VE ++ + + +D G LH A L+ + IV
Sbjct: 48 LTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIXGSTPLHLAA----------LIGHLEIV 96
Query: 322 RNL------INDKDKEGNTPLHLLA 340
L +N D G+TPLHL A
Sbjct: 97 EVLLKHGADVNAVDTWGDTPLHLAA 121
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 86/224 (38%), Gaps = 86/224 (38%)
Query: 120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS-TNGCGETPLYMAAERGFEKMLTEIL 178
T+ + TALH A ++V+ L++ VP + + G +PL++AA G ++++ +L
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 179 ENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDR 238
H AVN N G TPLHYA+ +R
Sbjct: 94 -------------VKGAHVNAVNQN----------------------GCTPLHYAASKNR 118
Query: 239 NIIAELLL----NSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGR 294
+ IA +LL N D Y TA+H AA +G L++V
Sbjct: 119 HEIAVMLLEGGANPDAKDHY------DATAMHRAAAKGNLKMV----------------- 155
Query: 295 GWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
H+L Y N+ +D EGNTPLHL
Sbjct: 156 ------------------HILLFYKASTNI---QDTEGNTPLHL 178
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 88/221 (39%), Gaps = 32/221 (14%)
Query: 55 EFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTAR 114
E E+IL SL + LH A GH +V L++
Sbjct: 21 ELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------------------ 61
Query: 115 QMLGMTNDEKNTA----LHEAMQHRSLDVVK-ILIKEDPAVPYSTNGCGETPLYMAAERG 169
LG+ ++K+ A LH A ++VK +L+K + NGC TPL+ AA +
Sbjct: 62 --LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGC--TPLHYAASKN 117
Query: 170 FEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTP 229
++ +LE + + TA+H AA N +T+ G TP
Sbjct: 118 RHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE--GNTP 175
Query: 230 LHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAG 270
LH A +R A+ L+ S+ ++N + T L +A G
Sbjct: 176 LHLACDEERVEEAKFLVTQGASI--YIENKEEKTPLQVAKG 214
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 61/148 (41%), Gaps = 24/148 (16%)
Query: 54 TEFVEQILEMCPSLLQSVNAKGDA---PLHVAAKCGHASVVTALIEIAKKQPKELESGVE 110
TE VE +L+ L VN K DA PLH+AA G +V AL L G
Sbjct: 53 TEIVEFLLQ----LGVPVNDKDDAGWSPLHIAASAGRDEIVKAL----------LVKGAH 98
Query: 111 STARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGF 170
A N T LH A ++ +L+ E A P + + T ++ AA +G
Sbjct: 99 VNA------VNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAKDHYDATAMHRAAAKGN 151
Query: 171 EKMLTEILENCPSVAHEGPSGKTALHAA 198
KM+ +L S + G T LH A
Sbjct: 152 LKMVHILLFYKASTNIQDTEGNTPLHLA 179
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 53/142 (37%), Gaps = 43/142 (30%)
Query: 230 LHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCE 289
L Y+ D + E +L +DKSLA D D + TALH A G +VE ++
Sbjct: 13 LAYSGKLDE--LKERIL-ADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQL------ 62
Query: 290 LVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHR 349
P+ NDKD G +PLH+ A+ RD +
Sbjct: 63 ---------------------------GVPV-----NDKDDAGWSPLHIAASAGRDEIVK 90
Query: 350 IVPWNVGGDYQAVNKQNISVKH 371
+ G AVN+ + H
Sbjct: 91 ALLVK-GAHVNAVNQNGCTPLH 111
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 138 DVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHA 197
D V+IL+ V +T+ G TPL++AA G +++ +L+N V +G T LH
Sbjct: 20 DEVRILMANGADV-NATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHL 78
Query: 198 AAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLL 246
AA + + DR GWTPLH A+ + I E+LL
Sbjct: 79 AAYDGHLEIVEVLLKHGADVNA--YDRAGWTPLHLAALSGQLEIVEVLL 125
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 258 NDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNN 317
+D +T LHLAA G+L +VE ++ + D G LH A ++ LL +
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGAD-VNASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 318 YPIVRNLINDKDKEGNTPLHLLA 340
V N D+ G TPLHL A
Sbjct: 95 GADV----NAYDRAGWTPLHLAA 113
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 26/174 (14%)
Query: 7 LYEAAAKGEIEPFKEI-SNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCP 65
L EAAA G+ + + + +N T +N T LH+ + E VE +L+
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANG------QLEIVEVLLKNGA 63
Query: 66 SLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKN 125
+ + ++ G PLH+AA GH +V L L+ G + A G
Sbjct: 64 DV-NASDSAGITPLHLAAYDGHLEIVEVL----------LKHGADVNAYDRAGW------ 106
Query: 126 TALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE 179
T LH A L++V++L+K V + + G T ++ +G E L EIL+
Sbjct: 107 TPLHLAALSGQLEIVEVLLKHGADV-NAQDALGLTAFDISINQGQED-LAEILQ 158
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 75 GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
G PLH+AA GH +V L L +G + A G T LH A
Sbjct: 35 GRTPLHMAAAVGHLEIVEVL----------LRNGADVNAVDTNG------TTPLHLAASL 78
Query: 135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTA 194
L++V++L+K V + + G TPLY+AA G +++ +L++ V + GKTA
Sbjct: 79 GHLEIVEVLLKYGADVN-AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTA 137
Query: 195 L 195
Sbjct: 138 F 138
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
D YG TPLH A+ I E+LL + + + N T LHLAA G L +VE ++
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG--TTPLHLAASLGHLEIVEVLLK 89
Query: 283 Y 283
Y
Sbjct: 90 Y 90
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
L EA + D V+IL+ + A + + G TPL+MAA G +++ +L N V
Sbjct: 6 LLEAARAGQDDEVRILMA-NGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV 64
Query: 188 GPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLL 246
+G T LH AA D G TPL+ A+Y+ I E+LL
Sbjct: 65 DTNGTTPLHLAAS--LGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLL 121
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 18/112 (16%)
Query: 68 LQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
+ +V+ G PLH+AA GH +V L L+ G + A+ G+ T
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVL----------LKYGADVNAKDATGI------TP 104
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE 179
L+ A L++V++L+K V + + G+T ++ + G E L EIL+
Sbjct: 105 LYLAAYWGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDIGNED-LAEILQ 154
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 17/129 (13%)
Query: 75 GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
G PLH+AAK GH +V L L+ G + A G T LH A +
Sbjct: 47 GHTPLHLAAKTGHLEIVEVL----------LKYGADVNAWDNYGA------TPLHLAADN 90
Query: 135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTA 194
L++V++L+K V + + G TPL++AA G +++ +L+ V + GKTA
Sbjct: 91 GHLEIVEVLLKHGADVN-AKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 195 LHAAAVNIN 203
+ N N
Sbjct: 150 FDISIDNGN 158
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
L EA + D V+IL+ V +T+ G TPL++AA+ G +++ +L+ V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAW 76
Query: 188 GPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLL 246
G T LH AA N D G+TPLH A+Y I E+LL
Sbjct: 77 DNYGATPLHLAA--DNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLL 133
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 39/84 (46%), Gaps = 17/84 (20%)
Query: 263 TALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVR 322
T LHLAA G L +VE ++ Y + D G LH A+D HL IV
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYGAD-VNAWDNYGATPLHL------AADNGHL----EIVE 97
Query: 323 NL------INDKDKEGNTPLHLLA 340
L +N KD EG TPLHL A
Sbjct: 98 VLLKHGADVNAKDYEGFTPLHLAA 121
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 17/145 (11%)
Query: 59 QILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLG 118
+IL + + +V+ G PLH+AA GH +V L L+ G + A + G
Sbjct: 31 RILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVL----------LKHGADVDAADVYG 80
Query: 119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL 178
T LH A L++V++L+K V + + G TPL++AA+ G +++ +L
Sbjct: 81 FT------PLHLAAMTGHLEIVEVLLKYGADVN-AFDMTGSTPLHLAADEGHLEIVEVLL 133
Query: 179 ENCPSVAHEGPSGKTALHAAAVNIN 203
+ V + GKTA + N N
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGN 158
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 66/164 (40%), Gaps = 46/164 (28%)
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
L EA + D V+ILI V N G TPL++AA G +++ +L+
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDN-TGLTPLHLAAVSGHLEIVEVLLK-------- 68
Query: 188 GPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLLN 247
H A V+ D YG+TPLH A+ I E+LL
Sbjct: 69 --------HGADVD-------------------AADVYGFTPLHLAAMTGHLEIVEVLLK 101
Query: 248 SDKSLAYIVD-NDRKMTA---LHLAAGQGKLRVVEEIISYCPEC 287
Y D N MT LHLAA +G L +VE ++ Y +
Sbjct: 102 ------YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADV 139
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 256 VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLL 315
VDN +T LHLAA G L +VE ++ + + + D G+ LH A ++ ++ LL
Sbjct: 43 VDN-TGLTPLHLAAVSGHLEIVEVLLKHGADV-DAADVYGFTPLHLAAMTGHLEIVEVLL 100
Query: 316 NNYPIVRNLINDKDKEGNTPLHLLA 340
V N D G+TPLHL A
Sbjct: 101 KYGADV----NAFDMTGSTPLHLAA 121
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 222 TDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEII 281
+D+ GWTPLH A+Y I E+LL + + + + T LHLAA G L +VE ++
Sbjct: 76 SDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAM--DYQGYTPLHLAAEDGHLEIVEVLL 133
Query: 282 SYCPEC 287
Y +
Sbjct: 134 KYGADV 139
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 70 SVNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNT 126
VNA G PLH+ GH ++ L++ A +SG T
Sbjct: 39 DVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGW----------------T 82
Query: 127 ALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAH 186
LH A L++V++L+K V + + G TPL++AAE G +++ +L+ V
Sbjct: 83 PLHLAAYRGHLEIVEVLLKYGADVN-AMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNA 141
Query: 187 EGPSGKTALHAAAVNIN 203
+ GKTA + N N
Sbjct: 142 QDKFGKTAFDISIDNGN 158
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 262 MTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIV 321
+T LHL G L ++E ++ Y + D GW LH A ++ LL V
Sbjct: 48 ITPLHLVVNNGHLEIIEVLLKYAAD-VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV 106
Query: 322 RNLINDKDKEGNTPLHLLA 340
N D +G TPLHL A
Sbjct: 107 ----NAMDYQGYTPLHLAA 121
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 17/145 (11%)
Query: 59 QILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLG 118
+IL + + + +A G PLH+AA GH +V L L++G + A G
Sbjct: 31 RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVL----------LKNGADVNAVDHAG 80
Query: 119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL 178
MT L A L++V++L+K V + + G TPL++AA G +++ +L
Sbjct: 81 MT------PLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLL 133
Query: 179 ENCPSVAHEGPSGKTALHAAAVNIN 203
+N V + GKTA + N N
Sbjct: 134 KNGADVNAQDKFGKTAFDISIDNGN 158
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 53/142 (37%), Gaps = 41/142 (28%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
D GWTPLH A++ I E+LL + + + + MT L LAA G L +VE ++
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV--DHAGMTPLRLAALFGHLEIVEVLLK 101
Query: 283 YCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAAL 342
+ +N D EG+TPLHL A
Sbjct: 102 NGAD--------------------------------------VNANDMEGHTPLHLAAMF 123
Query: 343 CRDSFHRIVPWNVGGDYQAVNK 364
++ N G D A +K
Sbjct: 124 GHLEIVEVLLKN-GADVNAQDK 144
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 55 EFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTAR 114
E VE +L+ + +V+ G PL +AA GH +V L L++G + A
Sbjct: 61 EIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVL----------LKNGADVNAN 109
Query: 115 QMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKML 174
M E +T LH A L++V++L+K V + + G+T ++ + G E L
Sbjct: 110 DM------EGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNED-L 161
Query: 175 TEILE 179
EIL+
Sbjct: 162 AEILQ 166
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 105 LESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYM 164
L++G ++ ++ G T LH A+ ++ V +IL++ + G TPL +
Sbjct: 71 LDAGADANSQDNTG------RTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLIL 124
Query: 165 AAERGFEKMLTEILENCPSVAHEGPSGKTALH-AAAVN 201
AA E M+ +++ + SGKTALH AAAVN
Sbjct: 125 AARLAIEGMVEDLITADADINAADNSGKTALHWAAAVN 162
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 121 NDEK-NTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE 179
ND K NT LH A + L++V++L+K V N G TPL++AA G +++ +L+
Sbjct: 43 NDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND-GSTPLHLAALFGHLEIVEVLLK 101
Query: 180 NCPSVAHEGPSGKTALHAAAVNIN 203
+ V + GKTA + N N
Sbjct: 102 HGADVNAQDKFGKTAFDISIDNGN 125
Score = 37.4 bits (85), Expect = 0.021, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
DR G TPLH A+ +D I E+LL + DND T LHLAA G L +VE ++
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGADVN-AHDNDGS-TPLHLAALFGHLEIVEVLLK 101
Query: 283 Y 283
+
Sbjct: 102 H 102
Score = 33.5 bits (75), Expect = 0.32, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 21/112 (18%)
Query: 71 VNA---KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
VNA KG+ PLH+AA H +V L L+ G + A +++ +T
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVL----------LKHGADVNAH------DNDGSTP 83
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE 179
LH A L++V++L+K V + + G+T ++ + G E L EIL+
Sbjct: 84 LHLAALFGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNED-LAEILQ 133
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 17/100 (17%)
Query: 75 GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
G+ PLH AAK GHA V L L G + AR G NT LH A ++
Sbjct: 9 GNTPLHNAAKNGHAEEVKKL----------LSKGADVNARSKDG------NTPLHLAAKN 52
Query: 135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKML 174
++VK+L+ + V + G TP ++A + G +++
Sbjct: 53 GHAEIVKLLLAKGADVNARSKD-GNTPEHLAKKNGHHEIV 91
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 19/76 (25%)
Query: 71 VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
VNA+ G+ PLH+AAK GHA +V L L G + AR G NT
Sbjct: 35 VNARSKDGNTPLHLAAKNGHAEIVKLL----------LAKGADVNARSKDG------NTP 78
Query: 128 LHEAMQHRSLDVVKIL 143
H A ++ ++VK+L
Sbjct: 79 EHLAKKNGHHEIVKLL 94
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 125 NTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSV 184
NT LH A ++ + VK L+ + V + G TPL++AA+ G +++ +L V
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 185 AHEGPSGKTALHAAAVN 201
G T H A N
Sbjct: 69 NARSKDGNTPEHLAKKN 85
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 158 GETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVN 201
G TPL+ AA+ G + + ++L V G T LH AA N
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN 52
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 299 LHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNV--G 356
LH A + A ++K LL+ V N + K+GNTPLHL A ++ IV + G
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADV----NARSKDGNTPLHLAA---KNGHAEIVKLLLAKG 65
Query: 357 GDYQAVNKQNISVKHITR 374
D A +K + +H+ +
Sbjct: 66 ADVNARSKDGNTPEHLAK 83
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 96/227 (42%), Gaps = 16/227 (7%)
Query: 123 EKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCP 182
E N L +A+Q+ +D+V+ L++ V + G TPL+ A + E ++ +L +
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 183 SVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIA 242
+G T AA I E D YG+T A+ + +
Sbjct: 64 DPVLRKKNGATPFLLAA--IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121
Query: 243 ELLLN--SDKSLAYIVDNDRKM------TALHLAAGQGKLRVVEEIISYCPECCELVDGR 294
+ L ++ +L D++ TAL AA +G + V++ ++ D
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181
Query: 295 GWNVLHFAMVSFDASDLK---HLLNNYPIVRNLINDKDKEGNTPLHL 338
G N L A++S D SD++ HLL ++ +N + + G TPL L
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPLIL 225
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 52 VSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVES 111
V ++F+ Q SL + G+ LH+AA+ + L LE+ ++
Sbjct: 6 VISDFIYQ----GASLHNQTDRTGETALHLAARYSRSDAAKRL----------LEASADA 51
Query: 112 TARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFE 171
+ +G T LH A+ + V +ILI+ + G TPL +AA E
Sbjct: 52 NIQDNMG------RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 105
Query: 172 KMLTEILENCPSVAHEGPSGKTALH 196
ML +++ + V GK+ALH
Sbjct: 106 GMLEDLINSHADVNAVDDLGKSALH 130
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 139 VVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAA 198
V+ I + ++ T+ GET L++AA +LE + G+T LHAA
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 52 VSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVES 111
V ++F+ Q SL + G+ LH+AA+ + L LE+ ++
Sbjct: 3 VISDFIYQ----GASLHNQTDRTGETALHLAARYSRSDAAKRL----------LEASADA 48
Query: 112 TARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFE 171
+ +G T LH A+ + V +IL++ + G TPL +AA E
Sbjct: 49 XIQDNMG------RTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALE 102
Query: 172 KMLTEILENCPSVAHEGPSGKTALH 196
ML +++ + V GK+ALH
Sbjct: 103 GMLEDLINSHADVNAVDDLGKSALH 127
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 139 VVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAA 198
V+ I + ++ T+ GET L++AA +LE + G+T LHAA
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 95/225 (42%), Gaps = 16/225 (7%)
Query: 123 EKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCP 182
E N L +A+Q+ +D+V+ L++ V + G TPL+ A + E ++ +L +
Sbjct: 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 83
Query: 183 SVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIA 242
+G T AA I E D YG+T A+ + +
Sbjct: 84 DPVLRKKNGATPFILAA--IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 141
Query: 243 ELLLN--SDKSLAYIVDNDRKM------TALHLAAGQGKLRVVEEIISYCPECCELVDGR 294
+ L ++ +L D++ TAL AA +G + V++ ++ D
Sbjct: 142 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 201
Query: 295 GWNVLHFAMVSFDASDLK---HLLNNYPIVRNLINDKDKEGNTPL 336
G N L A++S D SD++ HLL ++ +N + + G TPL
Sbjct: 202 GRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPL 243
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 52 VSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVES 111
V ++F+ Q SL + G+ LH+AA+ + L LE+ ++
Sbjct: 38 VISDFIYQ----GASLHNQTDRTGETALHLAARYSRSDAAKRL----------LEASADA 83
Query: 112 TARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFE 171
+ +G T LH A+ + V +ILI+ + G TPL +AA E
Sbjct: 84 NIQDNMG------RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 137
Query: 172 KMLTEILENCPSVAHEGPSGKTALH 196
ML +++ + V GK+ALH
Sbjct: 138 GMLEDLINSHADVNAVDDLGKSALH 162
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 139 VVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAA 198
V+ I + ++ T+ GET L++AA +LE + G+T LHAA
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 52 VSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVES 111
V ++F+ Q SL + G+ LH+AA+ + L LE+ ++
Sbjct: 39 VISDFIYQ----GASLHNQTDRTGETALHLAARYSRSDAAKRL----------LEASADA 84
Query: 112 TARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFE 171
+ +G T LH A+ + V +ILI+ + G TPL +AA E
Sbjct: 85 NIQDNMG------RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 138
Query: 172 KMLTEILENCPSVAHEGPSGKTALH 196
ML +++ + V GK+ALH
Sbjct: 139 GMLEDLINSHADVNAVDDLGKSALH 163
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 139 VVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAA 198
V+ I + ++ T+ GET L++AA +LE + G+T LHAA
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 98
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 90/212 (42%), Gaps = 22/212 (10%)
Query: 75 GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
GD PLH+A G+ V L+ + ++ +EL+ + N+ + T LH A+
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD------------IYNNLRQTPLHLAVIT 56
Query: 135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCP----SVAHEGPS 190
VV++L+ A P + + G+T ++A E L +L++ +
Sbjct: 57 TLPSVVRLLVTAG-ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD 115
Query: 191 GKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLLNSDK 250
G TALH AVN + G +PL +A + + +LLL
Sbjct: 116 GLTALH-VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174
Query: 251 SL-AYIVDNDRKMTALHLAAGQGKLRVVEEII 281
++ A + +ALH A+G+G L +V ++
Sbjct: 175 NVNAQMYSGS---SALHSASGRGLLPLVRTLV 203
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 89/201 (44%), Gaps = 24/201 (11%)
Query: 4 DPLLYEAAAKGEIEPFKEISNVL---GRV--VTHNNKNTILHVNIISRDRETIVSTEFVE 58
D L+ A +G + + N+ GR + +N + T LH+ +I+ + V
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT-------TLPSVV 62
Query: 59 QILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLG 118
++L + +++ G H+A + + + AL++ A +LE AR G
Sbjct: 63 RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE------ARNYDG 116
Query: 119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL 178
+T ALH A+ + V++L++ + G +PL A E M+ +L
Sbjct: 117 LT------ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 170
Query: 179 ENCPSVAHEGPSGKTALHAAA 199
++ +V + SG +ALH+A+
Sbjct: 171 QHGANVNAQMYSGSSALHSAS 191
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILEN 180
+D T LH A + L++V++L+K V +++ G TPL++AA G +++ +LE
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASDSWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 181 CPSVAHEGPSGKTALHAAAVNIN 203
V + GKTA + N N
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGN 125
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
L EA + D V+IL+ V + + G TPL++AA+RG +++ +L++ V
Sbjct: 18 LLEATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 188 GPSGKTALHAAA 199
G+T LH AA
Sbjct: 77 DSWGRTPLHLAA 88
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 21/112 (18%)
Query: 71 VNAKGDA---PLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
VNA DA PLH+AAK GH +V L L+ G + A G T
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVL----------LKHGADVNASDSWG------RTP 83
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE 179
LH A L++V++L++ V + + G+T ++ + G E L EIL+
Sbjct: 84 LHLAATVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGNED-LAEILQ 133
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
D G TPLH A+ I E+LL + + T LHLAA G L +VE ++
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVN--ASDSWGRTPLHLAATVGHLEIVEVLLE 101
Query: 283 Y 283
Y
Sbjct: 102 Y 102
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 221 ETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEI 280
+ D +G++PLH+A R+ + E+L+ + + D T LHLAA G +V+++
Sbjct: 34 QGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD--TPLHLAASHGHRDIVQKL 91
Query: 281 ISY 283
+ Y
Sbjct: 92 LQY 94
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 57 VEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIE 96
V ++L M + + +N D PLH+AA GH +V L++
Sbjct: 54 VVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ 93
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 117 LGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTE 176
L +D + LH A + VV++LI + G +TPL++AA G ++ +
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG-DDTPLHLAASHGHRDIVQK 90
Query: 177 ILENCPSVAHEGPSGKTALHAA 198
+L+ + G LH A
Sbjct: 91 LLQYKADINAVNEHGNVPLHYA 112
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 221 ETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEI 280
+ D +G++PLH+A R+ + E+L+ + + D T LHLAA G +V+++
Sbjct: 29 QGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD--TPLHLAASHGHRDIVQKL 86
Query: 281 ISY 283
+ Y
Sbjct: 87 LQY 89
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 57 VEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIE 96
V ++L M + + +N D PLH+AA GH +V L++
Sbjct: 49 VVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ 88
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 117 LGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTE 176
L +D + LH A + VV++LI + G +TPL++AA G ++ +
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG-DDTPLHLAASHGHRDIVQK 85
Query: 177 ILENCPSVAHEGPSGKTALHAA 198
+L+ + G LH A
Sbjct: 86 LLQYKADINAVNEHGNVPLHYA 107
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 21/112 (18%)
Query: 71 VNAKGDA---PLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
VNA DA PLH+AAK GH +V L L+ G + AR + G T
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVL----------LKHGADVNARDIWG------RTP 83
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE 179
LH A L++V++L++ V + + G+T ++ + G E L EIL+
Sbjct: 84 LHLAATVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGNED-LAEILQ 133
Score = 35.8 bits (81), Expect = 0.076, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILEN 180
+D T LH A + L++V++L+K V + + G TPL++AA G +++ +LE
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ARDIWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 181 CPSVAHEGPSGKTALHAAAVNIN 203
V + GKTA + N N
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGN 125
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
L EA + D V+IL+ V + + G TPL++AA+RG +++ +L++ V
Sbjct: 18 LLEATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 188 GPSGKTALHAAA 199
G+T LH AA
Sbjct: 77 DIWGRTPLHLAA 88
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKM---TALHLAAGQGKLRVVEE 279
D G TPLH A+ I E+LL + N R + T LHLAA G L +VE
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADV-----NARDIWGRTPLHLAATVGHLEIVEV 98
Query: 280 IISY 283
++ Y
Sbjct: 99 LLEY 102
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 126 TALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVA 185
T LH A Q L++V++L+K V N G TPL++AA RG +++ +L++ V
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYGADVNAEDN-FGITPLHLAAIRGHLEIVEVLLKHGADVN 107
Query: 186 HEGPSGKTALHAAAVNIN 203
+ GKTA + N N
Sbjct: 108 AQDKFGKTAFDISIDNGN 125
Score = 35.4 bits (80), Expect = 0.099, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 18/112 (16%)
Query: 68 LQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
+ +++ G PLH+AA+ GH +V L L+ G + A G+ T
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVL----------LKYGADVNAEDNFGI------TP 83
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE 179
LH A L++V++L+K V + + G+T ++ + G E L EIL+
Sbjct: 84 LHLAAIRGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNED-LAEILQ 133
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
D G TPLH A+ I E+LL + +++ +T LHLAA +G L +VE ++
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGADVN--AEDNFGITPLHLAAIRGHLEIVEVLLK 101
Query: 283 Y 283
+
Sbjct: 102 H 102
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
L EA + D V+IL+ V + + G TPL++AA+ G +++ +L+ V E
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE 76
Query: 188 GPSGKTALHAAAV 200
G T LH AA+
Sbjct: 77 DNFGITPLHLAAI 89
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 36.6 bits (83), Expect = 0.039, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILEN 180
+D T LH A + L++V++L+K V +++ G TPL++AA G +++ +LE
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASDIWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 181 CPSVAHEGPSGKTALHAAAVNIN 203
V + GKTA + N N
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGN 125
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 21/112 (18%)
Query: 71 VNAKGDA---PLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
VNA DA PLH+AAK GH +V L L+ G + A + G T
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVL----------LKHGADVNASDIWG------RTP 83
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE 179
LH A L++V++L++ V + + G+T ++ + G E L EIL+
Sbjct: 84 LHLAATVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGNED-LAEILQ 133
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
L EA + D V+IL+ V + + G TPL++AA+RG +++ +L++ V
Sbjct: 18 LLEATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 188 GPSGKTALHAAA 199
G+T LH AA
Sbjct: 77 DIWGRTPLHLAA 88
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
D G TPLH A+ I E+LL + + T LHLAA G L +VE ++
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVN--ASDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 283 Y 283
Y
Sbjct: 102 Y 102
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 19/215 (8%)
Query: 48 RETIVSTEF--VEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKEL 105
+ + EF V+++L PSLL + G PLH + A +T+ + ++K + L
Sbjct: 7 HQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-QAHEITSFL-LSKMENVNL 64
Query: 106 ESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKE--DPAVPYSTNGCGETPLY 163
+ +D T H A +L+VVK L P + TN G T L+
Sbjct: 65 DD-----------YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLH 112
Query: 164 MAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETD 223
+A + + ++ ++EN SV + + LH AA ++ D
Sbjct: 113 LAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA-SVGSLKLIELLCGLGKSAVNWQD 171
Query: 224 RYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDN 258
+ GWTPL +A A LL+ + +VDN
Sbjct: 172 KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 75/210 (35%), Gaps = 11/210 (5%)
Query: 125 NTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAE---RGFEKMLTEILENC 181
N LH+A V+ L+ P++ + G PL+ + L +EN
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 182 PSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYA---SYFDR 238
+ SG T H A N + G T LH A +F+
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE- 121
Query: 239 NIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNV 298
+++ L+ + S+ + + LH AA G L+++E + D +GW
Sbjct: 122 --VSQFLIENGASVR--IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 299 LHFAMVSFDASDLKHLLNNYPIVRNLINDK 328
L A+ L+ Y +L+++K
Sbjct: 178 LFHALAEGHGDAAVLLVEKYGAEYDLVDNK 207
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 19/215 (8%)
Query: 48 RETIVSTEF--VEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKEL 105
+ + EF V+++L PSLL + G PLH + A +T+ + ++K + L
Sbjct: 7 HQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-QAHEITSFL-LSKMENVNL 64
Query: 106 ESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKE--DPAVPYSTNGCGETPLY 163
+ +D T H A +L+VVK L P + TN G T L+
Sbjct: 65 DD-----------YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLH 112
Query: 164 MAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETD 223
+A + + ++ ++EN SV + + LH AA ++ D
Sbjct: 113 LAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA-SVGSLKLIELLCGLGKSAVNWQD 171
Query: 224 RYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDN 258
+ GWTPL +A A LL+ + +VDN
Sbjct: 172 KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 75/210 (35%), Gaps = 11/210 (5%)
Query: 125 NTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAE---RGFEKMLTEILENC 181
N LH+A V+ L+ P++ + G PL+ + L +EN
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 182 PSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYA---SYFDR 238
+ SG T H A N + G T LH A +F+
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE- 121
Query: 239 NIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNV 298
+++ L+ + S+ + + LH AA G L+++E + D +GW
Sbjct: 122 --VSQFLIENGASVR--IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 299 LHFAMVSFDASDLKHLLNNYPIVRNLINDK 328
L A+ L+ Y +L+++K
Sbjct: 178 LFHALAEGHGDAAVLLVEKYGAEYDLVDNK 207
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 3/161 (1%)
Query: 122 DEKN-TALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILEN 180
D++N T LH A + +D+VK I + V TPL+ A +G M+ ++++
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98
Query: 181 CPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNI 240
+ G + +H AA + D+ G TPL +A+Y ++
Sbjct: 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM--MDQNGMTPLMWAAYRTHSV 156
Query: 241 IAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEII 281
LL + + D K TALH A G V+ ++
Sbjct: 157 DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL 197
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 18/134 (13%)
Query: 65 PSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEK 124
PSL ++ +G + +H+AA+ GH S+V L IAK Q ++ M +
Sbjct: 102 PSL---IDGEGCSCIHLAAQFGHTSIVAYL--IAKGQDVDM-------------MDQNGM 143
Query: 125 NTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSV 184
+ A + S+D ++L+ + +V T L+ A G +++ +LE +V
Sbjct: 144 TPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV 203
Query: 185 AHEGPSGKTALHAA 198
+ G++AL A
Sbjct: 204 DAQNIKGESALDLA 217
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 19/215 (8%)
Query: 48 RETIVSTEF--VEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKEL 105
+ + EF V+++L PSLL + G PLH + A +T+ + ++K + L
Sbjct: 7 HQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-QAHEITSFL-LSKMENVNL 64
Query: 106 ESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKE--DPAVPYSTNGCGETPLY 163
+ +D T H A +L+VVK L P + TN G T L+
Sbjct: 65 DD-----------YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLH 112
Query: 164 MAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETD 223
+A + + ++ ++EN SV + + LH AA ++ D
Sbjct: 113 LAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA-SVGSLKLIELLCGLGKSAVNWQD 171
Query: 224 RYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDN 258
+ GWTPL +A A LL+ + +VDN
Sbjct: 172 KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 75/210 (35%), Gaps = 11/210 (5%)
Query: 125 NTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAE---RGFEKMLTEILENC 181
N LH+A V+ L+ P++ + G PL+ + L +EN
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 182 PSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYA---SYFDR 238
+ SG T H A N + G T LH A +F+
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE- 121
Query: 239 NIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNV 298
+++ L+ + S+ + + LH AA G L+++E + D +GW
Sbjct: 122 --VSQFLIENGASVR--IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 299 LHFAMVSFDASDLKHLLNNYPIVRNLINDK 328
L A+ L+ Y +L+++K
Sbjct: 178 LFHALAEGHGDAAVLLVEKYGAEYDLVDNK 207
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 105 LESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYM 164
+ +G + A +G+T LH A + L++V++L+K V + + GETPL++
Sbjct: 34 MANGADVNAEDKVGLT------PLHLAAMNDHLEIVEVLLKNGADV-NAIDAIGETPLHL 86
Query: 165 AAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNIN 203
A G +++ +L++ V + GKTA + N N
Sbjct: 87 VAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
D+ G TPLH A+ D I E+LL + + I + T LHL A G L +VE ++
Sbjct: 44 DKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI--DAIGETPLHLVAMYGHLEIVEVLLK 101
Query: 283 YCPEC 287
+ +
Sbjct: 102 HGADV 106
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 21/113 (18%)
Query: 70 SVNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNT 126
VNA+ G PLH+AA H +V L L++G + A +G T
Sbjct: 39 DVNAEDKVGLTPLHLAAMNDHLEIVEVL----------LKNGADVNAIDAIG------ET 82
Query: 127 ALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE 179
LH + L++V++L+K V + + G+T ++ + G E L EIL+
Sbjct: 83 PLHLVAMYGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNED-LAEILQ 133
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 20/145 (13%)
Query: 52 VSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVES 111
V ++F+ Q SL + G LH+AA + L LE+ ++
Sbjct: 38 VISDFIYQ----GASLHNQTDRTGATALHLAAAYSRSDAAKRL----------LEASADA 83
Query: 112 TARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFE 171
+ +G T LH A+ + V +ILI+ + G TPL +AA E
Sbjct: 84 NIQDNMG------RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 137
Query: 172 KMLTEILENCPSVAHEGPSGKTALH 196
ML +++ + V GK+ALH
Sbjct: 138 GMLEDLINSHADVNAVDDLGKSALH 162
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 21/112 (18%)
Query: 71 VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
VNA G PLH+AA GH +V L L++G + A T + T
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVL----------LKNGADVNA------TGNTGRTP 83
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE 179
LH A L++V++L+K V + + G+T ++ + G E L EIL+
Sbjct: 84 LHLAAWADHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNED-LAEILQ 133
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
L EA + D V+IL V + + G TPL++AA G +++ +L+N V
Sbjct: 18 LLEAARAGQDDEVRILTANGADVN-ANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNAT 76
Query: 188 GPSGKTALHAAA 199
G +G+T LH AA
Sbjct: 77 GNTGRTPLHLAA 88
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 125 NTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSV 184
+T LH A L++V++L+K V +T G TPL++AA +++ +L++ V
Sbjct: 48 HTPLHLAAMLGHLEIVEVLLKNGADVN-ATGNTGRTPLHLAAWADHLEIVEVLLKHGADV 106
Query: 185 AHEGPSGKTALHAAAVNIN 203
+ GKTA + N N
Sbjct: 107 NAQDKFGKTAFDISIDNGN 125
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
D +G TPLH A+ I E+LL + + + R T LHLAA L +VE ++
Sbjct: 44 DYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGR--TPLHLAAWADHLEIVEVLLK 101
Query: 283 Y 283
+
Sbjct: 102 H 102
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 24/150 (16%)
Query: 70 SVNAKGDAPLHVAAKC-------GHASVVTALIEIAKKQPKELESGVESTARQML--GMT 120
+VN++GD PL +A + + IE A+K+ + + + ARQ L G
Sbjct: 134 AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI---MLRDARQWLNSGHI 190
Query: 121 NDEKN-----TALHEAMQHRSLDVVKILIKEDPAVPYSTN---GCGETPLYMAAERGFEK 172
ND ++ TALH A +V+K+LI+ Y N G TPL+ AA G E+
Sbjct: 191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQ----ARYDVNIKDYDGWTPLHAAAHWGKEE 246
Query: 173 MLTEILENCPSVAHEGPSGKTALHAAAVNI 202
++EN + G+TA A +I
Sbjct: 247 ACRILVENLCDMEAVNKVGQTAFDVADEDI 276
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 84/229 (36%), Gaps = 41/229 (17%)
Query: 165 AAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDR 224
A G + + +LE + + G TALH A ++ N + D
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI--NQPDN 104
Query: 225 YGWTPLHYAS---YFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVE--- 278
GW PLH A+ Y D IAE L++ + + N T L +A + +++
Sbjct: 105 EGWIPLHAAASCGYLD---IAEYLISQGAHVGAV--NSEGDTPLDIAEEEAMEELLQNEV 159
Query: 279 -------EIISYCPECCELVDGRGW----------------NVLHFAMVSFDASDLKHLL 315
E E L D R W LH A LK L+
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219
Query: 316 NNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNK 364
R +N KD +G TPLH A ++ RI+ N+ D +AVNK
Sbjct: 220 Q----ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVNK 263
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 27/138 (19%)
Query: 73 AKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTND--EKNTALHE 130
A G+ LH+AA + L+E A + E MT++ E TALH
Sbjct: 35 AMGETALHIAALYDNLEAAMVLMEAAPELVFE-------------PMTSELYEGQTALHI 81
Query: 131 AMQHRSLDVVKILIKEDPAVPYSTNGC------------GETPLYMAAERGFEKMLTEIL 178
A+ ++++++V+ L+ +V G GE PL AA G E+++ ++
Sbjct: 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141
Query: 179 ENCPSVAHEGPSGKTALH 196
E+ + + G T LH
Sbjct: 142 EHGADIRAQDSLGNTVLH 159
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 159 ETPLYMAAERGFEKMLTEIL--ENCPSVAHEGPSGKTALHAAAVNIN 203
E+PL +AA+ + L+++L E C V G G+TALH AA+ N
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGC-EVHQRGAMGETALHIAALYDN 49
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 75 GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGV-ESTARQMLGMTNDEKN----TALH 129
G P+H+A +V AL+E AK++ + ES + E R++ + + K+ TALH
Sbjct: 84 GQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTALH 143
Query: 130 E--AMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPS 183
+ L+ +KIL++ A P + + ETPL A E + L + PS
Sbjct: 144 WCVGLGPEYLEXIKILVQLG-ASPTAKDKADETPLXRAXEFRNREALDLXXDTVPS 198
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%)
Query: 98 AKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGC 157
++ P+ E + R L N + +T LH A+ H+ ++V++L + C
Sbjct: 132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC 191
Query: 158 GETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNIN 203
G TPL++A E +L +L+ G+T L +A + N
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN 237
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 16/87 (18%)
Query: 34 NKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTA 93
+ +T LHV +I +D E V + + L + G PLH+A + ASV+
Sbjct: 157 DGHTPLHVAVIHKD------AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 94 LIEIAKKQPKELESGVESTARQMLGMT 120
L L++G + TAR G T
Sbjct: 211 L----------LKAGADPTARMYGGRT 227
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%)
Query: 98 AKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGC 157
++ P+ E + R L N + +T LH A+ H+ ++V++L + C
Sbjct: 132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC 191
Query: 158 GETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNIN 203
G TPL++A E +L +L+ G+T L +A + N
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN 237
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 16/87 (18%)
Query: 34 NKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTA 93
+ +T LHV +I +D E V + + L + G PLH+A + ASV+
Sbjct: 157 DGHTPLHVAVIHKD------AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 94 LIEIAKKQPKELESGVESTARQMLGMT 120
L L++G + TAR G T
Sbjct: 211 L----------LKAGADPTARMYGGRT 227
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 24/144 (16%)
Query: 57 VEQILEMCPSLLQSVN-----AKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVES 111
VE + ++C +QSVN + PLH AA SVV L L+ G +
Sbjct: 23 VETVKKLCT--VQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL----------LQHGADV 70
Query: 112 TARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFE 171
A+ G+ LH A + +V ++L+K AV + TPL+ AA +G
Sbjct: 71 HAKDKGGL------VPLHNACSYGHYEVAELLVKHG-AVVNVADLWKFTPLHEAAAKGKY 123
Query: 172 KMLTEILENCPSVAHEGPSGKTAL 195
++ +L++ + G T L
Sbjct: 124 EICKLLLQHGADPTKKNRDGNTPL 147
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
D+ G PLH A + +AELL+ + V + K T LH AA +GK + + ++
Sbjct: 74 DKGGLVPLHNACSYGHYEVAELLVKHGAVVN--VADLWKFTPLHEAAAKGKYEICKLLLQ 131
Query: 283 Y 283
+
Sbjct: 132 H 132
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 19/118 (16%)
Query: 228 TPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPEC 287
TPLH+A+ ++R + E LL + + + LH A G V E ++ +
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVH--AKDKGGLVPLHNACSYGHYEVAELLVKH-GAV 102
Query: 288 CELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLIN------DKDKEGNTPLHLL 339
+ D + LH A Y I + L+ K+++GNTPL L+
Sbjct: 103 VNVADLWKFTPLHEAAAK----------GKYEICKLLLQHGADPTKKNRDGNTPLDLV 150
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 26/161 (16%)
Query: 4 DPLLYEAAAKGEIEPFKEISNVLGRVV--THNNKNTILHVNIISRDRETIVSTEFVEQIL 61
D L EAA G++E K++ V ++T LH +R ++ VE +L
Sbjct: 11 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHF-AAGYNRVSV-----VEYLL 64
Query: 62 EMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTN 121
+ + + + G PLH A GH V L++ ++ + +
Sbjct: 65 QHGAD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGA----------------VVNVAD 107
Query: 122 DEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPL 162
K T LHEA ++ K+L++ A P N G TPL
Sbjct: 108 LWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPL 147
Score = 29.3 bits (64), Expect = 5.9, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 268 AAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLIND 327
AA G + V+++ + C ++GR LHFA S +++LL + V +
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV----HA 72
Query: 328 KDKEGNTPLH 337
KDK G PLH
Sbjct: 73 KDKGGLVPLH 82
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 24/144 (16%)
Query: 57 VEQILEMCPSLLQSVN-----AKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVES 111
VE + ++C +QSVN + PLH AA SVV L L+ G +
Sbjct: 21 VETVKKLCT--VQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL----------LQHGADV 68
Query: 112 TARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFE 171
A+ G+ LH A + +V ++L+K AV + TPL+ AA +G
Sbjct: 69 HAKDKGGL------VPLHNACSYGHYEVAELLVKHG-AVVNVADLWKFTPLHEAAAKGKY 121
Query: 172 KMLTEILENCPSVAHEGPSGKTAL 195
++ +L++ + G T L
Sbjct: 122 EICKLLLQHGADPTKKNRDGNTPL 145
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
D+ G PLH A + +AELL+ + V + K T LH AA +GK + + ++
Sbjct: 72 DKGGLVPLHNACSYGHYEVAELLVKHGAVVN--VADLWKFTPLHEAAAKGKYEICKLLLQ 129
Query: 283 Y 283
+
Sbjct: 130 H 130
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 19/118 (16%)
Query: 228 TPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPEC 287
TPLH+A+ ++R + E LL + + + LH A G V E ++ +
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVH--AKDKGGLVPLHNACSYGHYEVAELLVKH-GAV 100
Query: 288 CELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLIN------DKDKEGNTPLHLL 339
+ D + LH A Y I + L+ K+++GNTPL L+
Sbjct: 101 VNVADLWKFTPLHEAAAK----------GKYEICKLLLQHGADPTKKNRDGNTPLDLV 148
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 26/161 (16%)
Query: 4 DPLLYEAAAKGEIEPFKEISNVLGRVV--THNNKNTILHVNIISRDRETIVSTEFVEQIL 61
D L EAA G++E K++ V ++T LH +R ++ VE +L
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHF-AAGYNRVSV-----VEYLL 62
Query: 62 EMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTN 121
+ + + + G PLH A GH V L++ ++ + +
Sbjct: 63 QHGAD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGA----------------VVNVAD 105
Query: 122 DEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPL 162
K T LHEA ++ K+L++ A P N G TPL
Sbjct: 106 LWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPL 145
Score = 29.3 bits (64), Expect = 5.9, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 268 AAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLIND 327
AA G + V+++ + C ++GR LHFA S +++LL + V +
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV----HA 70
Query: 328 KDKEGNTPLH 337
KDK G PLH
Sbjct: 71 KDKGGLVPLH 80
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIV--DNDRKMTALHLAAGQGKLRVVEEI 280
D GWTPLH A + ELLL K+L ND + LH AA G + +V+ +
Sbjct: 40 DHAGWTPLHEACNHGHLKVVELLLQH-KALVNTTGYQND---SPLHDAAKNGHVDIVKLL 95
Query: 281 ISY 283
+SY
Sbjct: 96 LSY 98
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 23/114 (20%)
Query: 31 THNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASV 90
T++ T+LH+ I D I S E++ Q S + G PLH A GH V
Sbjct: 6 TNHRGETLLHIASIKGD---IPSVEYLLQ----NGSDPNVKDHAGWTPLHEACNHGHLKV 58
Query: 91 VTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILI 144
V L++ + ++ T + ++ LH+A ++ +D+VK+L+
Sbjct: 59 VELLLQ----------------HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 24/144 (16%)
Query: 57 VEQILEMCPSLLQSVN-----AKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVES 111
VE + ++C +QSVN + PLH AA SVV L L+ G +
Sbjct: 25 VETVKKLCT--VQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL----------LQHGADV 72
Query: 112 TARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFE 171
A+ G+ LH A + +V ++L+K AV + TPL+ AA +G
Sbjct: 73 HAKDKGGL------VPLHNACSYGHYEVAELLVKHG-AVVNVADLWKFTPLHEAAAKGKY 125
Query: 172 KMLTEILENCPSVAHEGPSGKTAL 195
++ +L++ + G T L
Sbjct: 126 EICKLLLQHGADPTKKNRDGNTPL 149
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
D+ G PLH A + +AELL+ + V + K T LH AA +GK + + ++
Sbjct: 76 DKGGLVPLHNACSYGHYEVAELLVKHGAVVN--VADLWKFTPLHEAAAKGKYEICKLLLQ 133
Query: 283 Y 283
+
Sbjct: 134 H 134
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 19/118 (16%)
Query: 228 TPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPEC 287
TPLH+A+ ++R + E LL + + + LH A G V E ++ +
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVH--AKDKGGLVPLHNACSYGHYEVAELLVKH-GAV 104
Query: 288 CELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLIN------DKDKEGNTPLHLL 339
+ D + LH A Y I + L+ K+++GNTPL L+
Sbjct: 105 VNVADLWKFTPLHEAAAK----------GKYEICKLLLQHGADPTKKNRDGNTPLDLV 152
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 26/161 (16%)
Query: 4 DPLLYEAAAKGEIEPFKEISNVLGRVV--THNNKNTILHVNIISRDRETIVSTEFVEQIL 61
D L EAA G++E K++ V ++T LH +R ++ VE +L
Sbjct: 13 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHF-AAGYNRVSV-----VEYLL 66
Query: 62 EMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTN 121
+ + + + G PLH A GH V L++ ++ + +
Sbjct: 67 QHGAD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGA----------------VVNVAD 109
Query: 122 DEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPL 162
K T LHEA ++ K+L++ A P N G TPL
Sbjct: 110 LWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPL 149
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 268 AAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLIND 327
AA G + V+++ + C ++GR LHFA S +++LL + V +
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV----HA 74
Query: 328 KDKEGNTPLH 337
KDK G PLH
Sbjct: 75 KDKGGLVPLH 84
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 105 LESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYM 164
+ +G + A+ G+T L+ A H L++V++L+K V + + G TPL++
Sbjct: 34 MANGADVNAKDEYGLT------PLYLATAHGHLEIVEVLLKNGADVN-AVDAIGFTPLHL 86
Query: 165 AAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNIN 203
AA G ++ +L++ V + GKTA + N N
Sbjct: 87 AAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGN 125
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
D YG TPL+ A+ I E+LL + + + + T LHLAA G L + E ++
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV--DAIGFTPLHLAAFIGHLEIAEVLLK 101
Query: 283 YCPEC 287
+ +
Sbjct: 102 HGADV 106
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
L EA + D V+IL+ V + + G TPLY+A G +++ +L+N V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 188 GPSGKTALHAAA 199
G T LH AA
Sbjct: 77 DAIGFTPLHLAA 88
>pdb|1UHM|A Chain A, Solution Structure Of The Globular Domain Of Linker
Histone Homolog Hho1p From S. Cerevisiae
Length = 78
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 398 EGVVSMRENKIVKRTSHWKFIDENYIGMKEASEFHLVVATLIATVAFSAAFTLPGG 453
EG+ +++E K R + KFI ENY + AS F L I + F P G
Sbjct: 13 EGLTALKERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQPKG 68
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 159 ETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXX 218
ETP + AA + E+ L+++LE+ A + +G+TAL A +
Sbjct: 46 ETPWWTAARKADEQALSQLLEDRDVDAVD-ENGRTALLFVA-GLGSDKCVRLLAEAGADL 103
Query: 219 XGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLA 268
R G T LH A+ + R + E L+ + V+++R +TAL LA
Sbjct: 104 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE--VEDERGLTALELA 151
>pdb|1UST|A Chain A, Yeast Histone H1 Globular Domain I, Hho1p Gi, Solution Nmr
Structures
Length = 93
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 398 EGVVSMRENKIVKRTSHWKFIDENYIGMKEASEFHLVVATLIATVAFSAAFTLPGG 453
EG+ +++E K R + KFI ENY + AS F L I + F P G
Sbjct: 16 EGLTALKERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQPKG 71
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 13/136 (9%)
Query: 159 ETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXX 218
ETP + AA + E+ L+++LE+ A + +G+TAL A +
Sbjct: 45 ETPWWTAARKADEQALSQLLEDRDVDAVD-ENGRTALLFVA-GLGSDKCVRLLAEAGADL 102
Query: 219 XGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVE 278
R G T LH A+ + R + E L+ + V+++R +TAL LA
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE--VEDERGLTALELA---------R 151
Query: 279 EIISYCPECCELVDGR 294
EI+ P+ + GR
Sbjct: 152 EILKTTPKGNPMQFGR 167
>pdb|1GZ5|A Chain A, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|B Chain B, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|C Chain C, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|D Chain D, Trehalose-6-Phosphate Synthase. Otsa
Length = 456
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 220 GETDRYGWTPLHYAS-YFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQ 271
G+ + GWTPL+Y + +FDR ++ ++ SD L + + + A A Q
Sbjct: 322 GKYGQLGWTPLYYLNQHFDRKLLXKIFRYSDVGLVTPLRDGXNLVAKEYVAAQ 374
>pdb|1P9R|A Chain A, Crystal Structure Of Vibrio Cholerae Putative Ntpase Epse
pdb|1P9W|A Chain A, Crystal Structure Of Vibrio Cholerae Putative Ntpase Epse
Length = 418
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 118 GMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEI 177
G T K+T L+ +Q + IL EDP + + +G G+T + + F + L I
Sbjct: 174 GPTGSGKSTTLYAGLQELNSSERNILTVEDP-IEFDIDGIGQTQVNPRVDXTFARGLRAI 232
Query: 178 LENCPSVAHEG 188
L P V G
Sbjct: 233 LRQDPDVVXVG 243
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Query: 81 VAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVV 140
VA G V +A + + K + + + + G T ALH A Q + +V
Sbjct: 242 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRT------ALHYAAQVSNXPIV 295
Query: 141 KILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAV 200
K L+ E + + G+TP+ +AA+ G +++ +++ SV + TA A
Sbjct: 296 KYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQA 355
Query: 201 N 201
N
Sbjct: 356 N 356
>pdb|1UQU|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQU|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQT|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose.
pdb|1UQT|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose
Length = 482
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 220 GETDRYGWTPLHYAS-YFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQ 271
G+ + GWTPL+Y + +FDR ++ ++ SD L + + + A A Q
Sbjct: 323 GKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQ 375
>pdb|2WTX|A Chain A, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|B Chain B, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|C Chain C, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|D Chain D, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
Length = 474
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 220 GETDRYGWTPLHYAS-YFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQ 271
G+ + GWTPL+Y + +FDR ++ ++ SD L + + + A A Q
Sbjct: 323 GKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQ 375
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 10/49 (20%)
Query: 72 NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMT 120
N +G+ PL VA+K G + +V L+E+ G + +AR + G+T
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLEL----------GADISARDLTGLT 169
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 22/152 (14%)
Query: 49 ETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIE-IAKKQPKELES 107
E I + + Q L+ + S N PL VA G + + L+E K + K++E
Sbjct: 12 EKIKDEKSINQNLDFLRNYRDSYNR---TPLMVACMLGMENAIDKLVENFDKLEDKDIEG 68
Query: 108 GVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAE 167
+TAL A+++ L + + L+ + V + + G+TPL +
Sbjct: 69 -----------------STALIWAVKNNRLGIAEKLLSKGSNVN-TKDFSGKTPLMWSII 110
Query: 168 RGFEKMLTEILENCPSVAHEGPSGKTALHAAA 199
G+ +M +LE+ +V G+T L A+
Sbjct: 111 FGYSEMSYFLLEHGANVNDRNLEGETPLIVAS 142
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 15/90 (16%)
Query: 123 EKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNG---------C---GETPLYMAAERGF 170
+ ++ALH A++ RSL VK+L++ V G C GE PL +AA
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148
Query: 171 EKMLTEILEN---CPSVAHEGPSGKTALHA 197
++T +LEN S+ G T LHA
Sbjct: 149 WDVVTYLLENPHQPASLEATDSLGNTVLHA 178
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 15/67 (22%)
Query: 72 NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTN-----DEKNT 126
+ G PLH+AA+ GH VV L LE+G + A+ G T D N
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLL----------LEAGADVXAQDKFGKTAFDISIDNGNE 103
Query: 127 ALHEAMQ 133
L E +Q
Sbjct: 104 DLAEILQ 110
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
L EA + D V+IL+ V + + G TPL++AA G +++ +LE V +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 188 GPSGKTALHAAAVNIN 203
GKTA + N N
Sbjct: 87 DKFGKTAFDISIDNGN 102
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 15/67 (22%)
Query: 72 NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTN-----DEKNT 126
+ G PLH+AA+ GH VV L LE+G + A+ G T D N
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLL----------LEAGADVNAQDKFGKTAFDISIDNGNE 85
Query: 127 ALHEAMQ 133
L E +Q
Sbjct: 86 DLAEILQ 92
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
L EA + D V+IL+ V + + G TPL++AA G +++ +LE V +
Sbjct: 10 LLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 188 GPSGKTALHAAAVNIN 203
GKTA + N N
Sbjct: 69 DKFGKTAFDISIDNGN 84
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 35/178 (19%)
Query: 7 LYEAAAKGEIEPFKEISNVLGRVVTHNNK-----NTILHVNIISRDRETIVSTEFVEQIL 61
L AAA+G+++ E+ +L R + H + T L V + V+ E ++Q
Sbjct: 14 LSGAAARGDVQ---EVRRLLHRELVHPDALNRFGKTALQVMMFG---SPAVALELLKQ-- 65
Query: 62 EMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTN 121
P++ +A G +P+H AA+ G + L+ E G + A G
Sbjct: 66 GASPNVQ---DASGTSPVHDAARTGFLDTLKVLV----------EHGADVNALDSTG--- 109
Query: 122 DEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE 179
+ +H A++ VV L E + + G TPL +A +RG + ++ +IL+
Sbjct: 110 ---SLPIHLAIREGHSSVVSFLAPESDL--HHRDASGLTPLELARQRGAQNLM-DILQ 161
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 35/178 (19%)
Query: 7 LYEAAAKGEIEPFKEISNVLGRVVTHNNK-----NTILHVNIISRDRETIVSTEFVEQIL 61
L AAA+G+++ E+ +L R + H + T L V + V+ E ++Q
Sbjct: 12 LSGAAARGDVQ---EVRRLLHRELVHPDALNRFGKTALQVMMFG---SPAVALELLKQ-- 63
Query: 62 EMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTN 121
P++ +A G +P+H AA+ G + L+ E G + A G
Sbjct: 64 GASPNVQ---DASGTSPVHDAARTGFLDTLKVLV----------EHGADVNALDSTG--- 107
Query: 122 DEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE 179
+ +H A++ VV L E + + G TPL +A +RG + ++ +IL+
Sbjct: 108 ---SLPIHLAIREGHSSVVSFLAPESDL--HHRDASGLTPLELARQRGAQNLM-DILQ 159
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 23/94 (24%)
Query: 123 EKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNG---------C---GETPLYMAAERGF 170
+ ++ALH A++ RSL VK+L++ V G C GE PL +AA
Sbjct: 102 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 161
Query: 171 EKMLTEILENCPSVAHEGPS-------GKTALHA 197
++T +LEN H+ S G T LHA
Sbjct: 162 WDVVTYLLEN----PHQPASLEATDSLGNTVLHA 191
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 289 ELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLA 340
+L D G+ V+H A + L+ LL N V N +D EGN PLHL A
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLENQADV----NIEDNEGNLPLHLAA 111
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
DR G+ +H A+ + LL + + I DN+ + LHLAA +G LRVVE ++
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLENQADVN-IEDNEGNL-PLHLAAKEGHLRVVEFLVK 124
Query: 283 Y 283
+
Sbjct: 125 H 125
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 15/88 (17%)
Query: 125 NTALHEAMQHRSLDVVKILIKEDPAVPYSTNG---------C---GETPLYMAAERGFEK 172
++ALH A++ RSL VK+L++ V G C GE PL +AA
Sbjct: 96 HSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQWD 155
Query: 173 MLTEILEN---CPSVAHEGPSGKTALHA 197
+++ +LEN S+ G T LHA
Sbjct: 156 VVSYLLENPHQPASLQATDSQGNTVLHA 183
>pdb|2EB0|A Chain A, Crystal Structure Of Methanococcus Jannaschii Putative
Family Ii Inorganic Pyrophosphatase
pdb|2EB0|B Chain B, Crystal Structure Of Methanococcus Jannaschii Putative
Family Ii Inorganic Pyrophosphatase
Length = 307
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 436 ATLIATVAFSAAFTLPGGNKSEGSPDQG----AAILSKQAAFQAFVISD 480
AT+IA + F A L GG K E PD +AI+S F++ +D
Sbjct: 110 ATVIAELYFKDAIDLIGGKKKELKPDLAGLLLSAIISDTVLFKSPTTTD 158
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 9/54 (16%)
Query: 66 SLLQSVNAKGDAPLHVAAKCGHASVVTALIE------IAKK---QPKELESGVE 110
++L + ++ GD L++AA+ G+ S+V AL++ IA K +P + +G+E
Sbjct: 274 NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 18/71 (25%)
Query: 71 VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTN-----D 122
VNAK G PLH+AA+ GH +V L L++G + A+ G T D
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVL----------LKAGADVNAQDKFGKTAFDISID 77
Query: 123 EKNTALHEAMQ 133
N L E +Q
Sbjct: 78 NGNEDLAEILQ 88
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 29.3 bits (64), Expect = 6.4, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 158 GETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALH 196
G TPL +AA E ML +++ + V GK+ALH
Sbjct: 15 GTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALH 53
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 16/106 (15%)
Query: 321 VRNLIN-DKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITRYGFPQ 379
+R +IN D +EG +HL+ AL D F D ++ + TR +
Sbjct: 150 LRPIINYDFTREGM--VHLVKALTNDGFKI-------DDAMINSRYTYATDEATRKAYVA 200
Query: 380 LEQEIRELS------KYIGSGQYPEGVVSMRENKIVKRTSHWKFID 419
Q IRE ++I Q P VV +++K+V + +KF+D
Sbjct: 201 TMQWIREQGGLFYDPEFIRKVQVPTLVVQGKDDKVVPVETAYKFLD 246
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
DR G+ +H A+ + + LL + I DN+ + LHLAA +G LRVVE ++
Sbjct: 67 DRTGFAVIHDAARAGQLDTLQTLLEFQADVN-IEDNEGNL-PLHLAAKEGHLRVVEFLVK 124
Query: 283 Y 283
+
Sbjct: 125 H 125
Score = 28.9 bits (63), Expect = 7.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 289 ELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLA 340
+L D G+ V+H A + L+ LL + +N +D EGN PLHL A
Sbjct: 64 DLKDRTGFAVIHDAARAGQLDTLQTLLE----FQADVNIEDNEGNLPLHLAA 111
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 28.9 bits (63), Expect = 7.7, Method: Composition-based stats.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 35/178 (19%)
Query: 7 LYEAAAKGEIEPFKEISNVLGRVVTHNNK-----NTILHVNIISRDRETIVSTEFVEQIL 61
L AAA+G+++ E+ +L R + H + T L V + T ++ E ++Q
Sbjct: 6 LSGAAARGDVQ---EVRRLLHRELVHPDALNRFGKTALQVMMFG---STAIALELLKQ-- 57
Query: 62 EMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTN 121
P++ + G +P+H AA+ G + L+ E G + G
Sbjct: 58 GASPNVQ---DTSGTSPVHDAARTGFLDTLKVLV----------EHGADVNVPDGTGA-- 102
Query: 122 DEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE 179
+H A+Q VV L E + + G TPL +A +RG + L +IL+
Sbjct: 103 ----LPIHLAVQEGHTAVVSFLAAESDL--HRRDARGLTPLELALQRGAQD-LVDILQ 153
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 224 RYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVD-----NDRKMTALHLAAGQGKLRVVE 278
R + PL A D ++ E L + + Y VD ND +TALH A G +V+
Sbjct: 30 RVKFNPLPLALLLDSSLEGEFDLV--QRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVK 87
Query: 279 EIISYCPECCELVDGRGWNVLHFA 302
++ + D GW LH A
Sbjct: 88 FLVQFGVN-VNAADSDGWTPLHCA 110
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 126 TALHEAMQHRSLDVVKILIKEDPAVPYSTNG-------------CGETPLYMAAERGFEK 172
TALH A++ R+ +V +L++ V + NG GE PL +AA
Sbjct: 103 TALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162
Query: 173 MLTEILENC---PSVAHEGPSGKTALHA 197
++ +L+N ++ G T LHA
Sbjct: 163 IVKFLLQNSWQPADISARDSVGNTVLHA 190
>pdb|2P91|A Chain A, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
pdb|2P91|B Chain B, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
pdb|2P91|C Chain C, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
pdb|2P91|D Chain D, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
Length = 285
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 375 YGFPQLEQEIRELSKYIGSGQYPEGVVSMRENKIVKRTSHWKFIDENY 422
Y P+LE+ +RE++K GS + VS+ E+ +K KF++EN+
Sbjct: 54 YATPKLEKRVREIAKGFGSDLVVKCDVSLDED--IKNLK--KFLEENW 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,185,932
Number of Sequences: 62578
Number of extensions: 596539
Number of successful extensions: 2191
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 1401
Number of HSP's gapped (non-prelim): 492
length of query: 577
length of database: 14,973,337
effective HSP length: 104
effective length of query: 473
effective length of database: 8,465,225
effective search space: 4004051425
effective search space used: 4004051425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)