Query 008102
Match_columns 577
No_of_seqs 459 out of 4112
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 18:09:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008102.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008102hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 6.8E-54 2.3E-58 446.7 33.0 349 4-386 15-365 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 2.1E-53 7.1E-58 443.1 31.3 351 3-387 47-399 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 6.2E-42 2.1E-46 343.7 23.8 292 34-362 24-330 (337)
4 3utm_A Tankyrase-1; tankyrase, 100.0 1.8E-42 6.1E-47 349.4 19.8 309 30-386 19-330 (351)
5 1wdy_A 2-5A-dependent ribonucl 100.0 1.9E-41 6.4E-46 331.4 23.8 265 74-364 4-284 (285)
6 4g8k_A 2-5A-dependent ribonucl 100.0 3E-40 1E-44 331.4 28.0 289 4-328 26-330 (337)
7 2fo1_E LIN-12 protein; beta-ba 100.0 1.4E-41 4.7E-46 345.5 15.5 315 3-358 37-371 (373)
8 1wdy_A 2-5A-dependent ribonucl 100.0 4E-40 1.4E-44 321.9 25.2 265 34-330 4-284 (285)
9 3utm_A Tankyrase-1; tankyrase, 100.0 8.7E-40 3E-44 329.7 25.2 318 4-374 25-347 (351)
10 3d9h_A CDNA FLJ77766, highly s 100.0 3.8E-39 1.3E-43 315.0 21.4 271 71-361 11-282 (285)
11 3d9h_A CDNA FLJ77766, highly s 100.0 6.5E-39 2.2E-43 313.3 21.1 253 121-386 12-274 (285)
12 2xai_A ASB-9, ankyrin repeat a 100.0 1.9E-38 6.6E-43 306.0 23.2 244 123-381 2-254 (261)
13 2xai_A ASB-9, ankyrin repeat a 100.0 8.5E-39 2.9E-43 308.5 20.2 253 74-352 2-258 (261)
14 2fo1_E LIN-12 protein; beta-ba 100.0 1.1E-39 3.9E-44 331.4 14.0 308 36-386 38-367 (373)
15 3ljn_A Hypothetical protein; a 100.0 2.5E-39 8.4E-44 328.3 11.7 263 67-353 12-310 (364)
16 1yyh_A HN1;, notch 1, ankyrin 100.0 6.4E-38 2.2E-42 301.0 18.8 220 117-344 3-235 (253)
17 1oy3_D Transcription factor in 100.0 1.4E-37 4.7E-42 303.6 20.8 263 68-374 2-266 (282)
18 1yyh_A HN1;, notch 1, ankyrin 100.0 5E-37 1.7E-41 294.7 21.7 229 68-317 3-245 (253)
19 1k1a_A B-cell lymphoma 3-encod 100.0 8.9E-37 3E-41 290.7 20.8 231 117-356 2-239 (241)
20 3b7b_A Euchromatic histone-lys 100.0 1.5E-36 5E-41 288.5 21.8 219 117-344 4-222 (237)
21 1oy3_D Transcription factor in 100.0 2.6E-37 9E-42 301.6 17.0 241 117-386 2-246 (282)
22 3ljn_A Hypothetical protein; a 100.0 2.8E-37 9.4E-42 313.3 17.7 258 117-386 13-311 (364)
23 3aji_A 26S proteasome non-ATPa 100.0 1.2E-36 4.1E-41 287.9 19.4 228 121-358 3-230 (231)
24 1k1a_A B-cell lymphoma 3-encod 100.0 3E-36 1E-40 287.0 21.8 232 68-317 2-238 (241)
25 3b7b_A Euchromatic histone-lys 100.0 1.3E-35 4.3E-40 282.0 24.6 228 67-316 3-231 (237)
26 3aji_A 26S proteasome non-ATPa 100.0 3.6E-35 1.2E-39 277.7 24.2 225 72-317 3-227 (231)
27 4b93_B Ankyrin repeat domain-c 100.0 1.7E-36 5.9E-41 292.7 14.0 216 119-343 6-229 (269)
28 1s70_B 130 kDa myosin-binding 100.0 2.9E-36 9.8E-41 297.1 15.1 277 81-382 4-281 (299)
29 2dzn_A Probable 26S proteasome 100.0 3.3E-35 1.1E-39 277.3 20.9 211 124-342 2-218 (228)
30 4b93_B Ankyrin repeat domain-c 100.0 6.6E-36 2.2E-40 288.7 15.7 224 70-307 6-230 (269)
31 2dzn_A Probable 26S proteasome 100.0 1.6E-34 5.6E-39 272.5 24.2 220 75-317 2-227 (228)
32 3eu9_A Huntingtin-interacting 100.0 1.6E-34 5.6E-39 274.6 22.7 229 69-317 3-232 (240)
33 1s70_B 130 kDa myosin-binding 100.0 1.2E-35 4.2E-40 292.5 11.5 241 71-343 36-276 (299)
34 2f8y_A Notch homolog 1, transl 100.0 2.8E-34 9.4E-39 270.0 17.5 217 134-359 1-217 (223)
35 3eu9_A Huntingtin-interacting 100.0 7.6E-34 2.6E-38 269.9 20.5 233 118-361 3-238 (240)
36 3kea_A K1L; tropism, ANK repea 100.0 1.2E-34 4.1E-39 283.0 14.8 227 117-364 24-252 (285)
37 3kea_A K1L; tropism, ANK repea 100.0 4.7E-34 1.6E-38 278.8 19.0 229 67-331 23-253 (285)
38 1sw6_A Regulatory protein SWI6 100.0 4.7E-35 1.6E-39 291.7 10.7 276 34-341 22-325 (327)
39 2f8y_A Notch homolog 1, transl 100.0 6.9E-33 2.4E-37 260.5 20.7 197 70-286 20-216 (223)
40 1sw6_A Regulatory protein SWI6 100.0 1.6E-34 5.3E-39 287.9 1.9 260 72-374 20-324 (327)
41 1ikn_D Protein (I-kappa-B-alph 100.0 8.2E-33 2.8E-37 262.4 12.9 214 119-339 3-226 (236)
42 1ikn_D Protein (I-kappa-B-alph 100.0 3.3E-33 1.1E-37 265.1 9.6 219 70-305 3-229 (236)
43 2rfa_A Transient receptor pote 100.0 2.4E-31 8.1E-36 251.6 19.4 204 74-317 2-219 (232)
44 2rfa_A Transient receptor pote 100.0 1E-30 3.4E-35 247.3 21.7 212 123-365 2-229 (232)
45 3hra_A Ankyrin repeat family p 100.0 3.3E-30 1.1E-34 237.9 22.4 192 122-317 3-200 (201)
46 3hra_A Ankyrin repeat family p 100.0 1.5E-30 5.1E-35 240.3 19.7 191 34-248 4-200 (201)
47 2etb_A Transient receptor pote 100.0 2.6E-31 8.9E-36 255.4 12.7 209 34-252 1-247 (256)
48 2pnn_A Transient receptor pote 100.0 8.2E-31 2.8E-35 254.4 15.8 207 31-250 9-257 (273)
49 2pnn_A Transient receptor pote 100.0 4.2E-31 1.4E-35 256.5 13.2 235 67-336 5-271 (273)
50 2etb_A Transient receptor pote 100.0 2E-30 6.9E-35 249.1 13.4 193 74-317 1-243 (256)
51 4gpm_A Engineered protein OR26 100.0 3E-29 1E-33 223.5 19.1 158 77-253 6-163 (169)
52 3jxi_A Vanilloid receptor-rela 100.0 8.1E-30 2.8E-34 245.5 12.5 209 34-252 4-251 (260)
53 4gpm_A Engineered protein OR26 100.0 1.8E-28 6.3E-33 218.4 18.6 156 126-286 6-161 (169)
54 2aja_A Ankyrin repeat family p 100.0 3.8E-32 1.3E-36 273.2 -7.0 280 37-383 67-367 (376)
55 3jxi_A Vanilloid receptor-rela 100.0 3E-29 1E-33 241.5 10.8 200 72-285 2-249 (260)
56 2rfm_A Putative ankyrin repeat 100.0 1.6E-27 5.5E-32 218.2 17.2 165 66-249 26-190 (192)
57 2vge_A RELA-associated inhibit 100.0 4.7E-29 1.6E-33 234.7 6.8 205 140-355 1-211 (229)
58 4hbd_A KN motif and ankyrin re 100.0 1.3E-27 4.4E-32 231.9 17.2 191 75-283 76-272 (276)
59 4hbd_A KN motif and ankyrin re 99.9 9.4E-28 3.2E-32 232.9 12.9 193 34-249 75-273 (276)
60 3v30_A DNA-binding protein rfx 99.9 4.8E-27 1.6E-31 210.9 15.9 169 36-229 3-171 (172)
61 1ihb_A P18-INK4C(INK6), cyclin 99.9 4.4E-27 1.5E-31 208.9 15.1 159 74-251 4-162 (162)
62 2vge_A RELA-associated inhibit 99.9 8.9E-29 3E-33 232.8 4.0 204 91-315 1-208 (229)
63 3v30_A DNA-binding protein rfx 99.9 7.5E-27 2.6E-31 209.7 16.2 158 124-285 2-159 (172)
64 2rfm_A Putative ankyrin repeat 99.9 1.2E-26 4.2E-31 212.3 17.7 164 115-283 26-189 (192)
65 3v31_A Ankyrin repeat family A 99.9 1.3E-26 4.3E-31 207.1 16.7 159 74-251 2-160 (167)
66 2y1l_E Darpin-8.4; hydrolase-i 99.9 2.6E-26 9E-31 205.5 18.2 160 71-249 10-169 (169)
67 3v31_A Ankyrin repeat family A 99.9 4E-26 1.4E-30 203.9 17.6 159 123-286 2-160 (167)
68 1ihb_A P18-INK4C(INK6), cyclin 99.9 3.6E-26 1.2E-30 203.0 15.7 158 123-285 4-161 (162)
69 1awc_B Protein (GA binding pro 99.9 1.3E-25 4.4E-30 197.4 17.8 150 76-245 3-152 (153)
70 3twr_A Tankyrase-2; ankyrin re 99.9 1E-25 3.4E-30 200.8 16.7 161 120-285 4-164 (165)
71 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.7E-25 5.8E-30 200.2 18.1 159 120-283 10-168 (169)
72 3twr_A Tankyrase-2; ankyrin re 99.9 6.4E-26 2.2E-30 202.1 13.9 161 71-250 4-164 (165)
73 3f6q_A Integrin-linked protein 99.9 3.2E-25 1.1E-29 200.4 18.2 161 122-286 3-163 (179)
74 1awc_B Protein (GA binding pro 99.9 3.2E-25 1.1E-29 194.9 17.4 151 124-280 2-152 (153)
75 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.9E-25 1E-29 195.8 17.0 154 75-248 2-155 (156)
76 1ycs_B 53BP2, P53BP2; ankyrin 99.9 7.2E-27 2.5E-31 221.7 6.8 217 121-374 2-226 (239)
77 2aja_A Ankyrin repeat family p 99.9 2.8E-27 9.5E-32 237.8 2.3 253 76-386 66-340 (376)
78 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.4E-26 4.7E-31 219.8 5.6 129 122-253 35-166 (239)
79 1bd8_A P19INK4D CDK4/6 inhibit 99.9 8.6E-25 2.9E-29 192.8 16.7 154 124-283 2-155 (156)
80 3f6q_A Integrin-linked protein 99.9 7.4E-25 2.5E-29 198.0 16.1 167 157-332 4-171 (179)
81 1d9s_A Cyclin-dependent kinase 99.9 2.4E-23 8.2E-28 178.8 12.3 132 66-216 3-135 (136)
82 1bi7_B P16INK4A, MTS1, multipl 99.9 1.2E-23 4.1E-28 185.4 10.3 145 220-373 6-151 (156)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 4.3E-23 1.5E-27 181.9 11.2 142 70-231 7-149 (156)
84 1d9s_A Cyclin-dependent kinase 99.9 6.4E-23 2.2E-27 176.2 11.5 131 117-251 5-136 (136)
85 3t8k_A Uncharacterized protein 99.9 7.6E-24 2.6E-28 191.8 4.7 158 5-183 8-179 (186)
86 3t8k_A Uncharacterized protein 99.9 4.4E-23 1.5E-27 186.8 9.0 155 75-249 6-177 (186)
87 3ui2_A Signal recognition part 99.9 5.4E-23 1.8E-27 195.4 7.7 171 33-249 13-183 (244)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.7E-21 5.7E-26 164.7 16.1 125 74-216 1-125 (126)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 7.6E-22 2.6E-26 169.4 13.3 122 74-213 13-134 (136)
90 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.3E-21 7.9E-26 163.8 15.8 126 123-251 1-126 (126)
91 2jab_A H10-2-G3; HER2, darpin, 99.9 1.6E-21 5.3E-26 167.5 14.3 127 120-249 10-136 (136)
92 3deo_A Signal recognition part 99.9 7.5E-22 2.6E-26 178.8 10.5 142 71-248 40-181 (183)
93 3c5r_A BARD-1, BRCA1-associate 99.8 1.2E-21 4.2E-26 168.3 7.7 124 121-247 7-130 (137)
94 3deo_A Signal recognition part 99.8 5.5E-21 1.9E-25 173.1 11.8 140 121-283 41-181 (183)
95 3c5r_A BARD-1, BRCA1-associate 99.8 4.1E-21 1.4E-25 165.0 9.9 130 153-286 5-134 (137)
96 3ui2_A Signal recognition part 99.8 6.8E-21 2.3E-25 180.9 11.6 143 121-286 42-185 (244)
97 2b0o_E UPLC1; arfgap, structur 99.8 7.9E-20 2.7E-24 178.7 17.4 149 72-239 148-299 (301)
98 3aaa_C Myotrophin, protein V-1 99.8 1.3E-20 4.6E-25 158.5 9.4 109 73-198 5-113 (123)
99 2b0o_E UPLC1; arfgap, structur 99.8 3.6E-20 1.2E-24 181.2 13.1 138 126-273 153-298 (301)
100 3aaa_C Myotrophin, protein V-1 99.8 4.5E-20 1.5E-24 155.3 11.4 115 121-238 4-118 (123)
101 3ehr_A Osteoclast-stimulating 99.8 1.2E-20 4E-25 176.7 8.4 130 70-217 68-198 (222)
102 3ehr_A Osteoclast-stimulating 99.8 8.9E-20 3.1E-24 170.7 9.7 132 119-253 68-200 (222)
103 1dcq_A PYK2-associated protein 99.8 4.2E-18 1.5E-22 164.5 18.3 233 16-251 5-263 (278)
104 1dcq_A PYK2-associated protein 99.8 3.7E-19 1.3E-23 172.0 10.0 124 228-357 132-262 (278)
105 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.7E-18 5.9E-23 137.6 11.1 91 75-182 2-92 (93)
106 3jue_A Arfgap with coiled-coil 99.8 2.3E-18 7.9E-23 172.2 12.7 125 122-249 197-324 (368)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.8 7.9E-18 2.7E-22 133.7 12.3 91 124-216 2-92 (93)
108 3lvq_E ARF-GAP with SH3 domain 99.7 1.3E-17 4.6E-22 175.1 16.4 144 74-236 131-277 (497)
109 3lvq_E ARF-GAP with SH3 domain 99.7 1.1E-17 3.8E-22 175.7 15.1 137 124-270 132-276 (497)
110 3jue_A Arfgap with coiled-coil 99.7 9.1E-18 3.1E-22 167.9 13.1 148 154-305 195-347 (368)
111 2l6b_A NR1C; ankyrin, consensu 99.7 1.9E-18 6.5E-23 143.3 6.7 104 260-369 8-111 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.7 1.4E-17 4.9E-22 138.0 8.8 108 119-229 4-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.6 9E-16 3.1E-20 125.9 9.2 89 120-210 20-108 (110)
114 2zgd_A 3 repeat synthetic anky 99.6 2.2E-15 7.6E-20 123.6 10.6 93 151-245 17-109 (110)
115 4hkr_A Calcium release-activat 70.2 53 0.0018 28.4 12.7 22 472-493 59-80 (214)
116 4ev6_A Magnesium transport pro 47.9 70 0.0024 30.5 9.1 21 514-534 281-301 (339)
117 1gp8_A Protein (scaffolding pr 45.0 7.5 0.00026 23.3 0.9 21 4-24 14-34 (40)
118 2iub_A CORA, divalent cation t 31.8 70 0.0024 30.9 6.2 27 514-540 305-335 (363)
119 2ks1_B Epidermal growth factor 29.6 69 0.0023 20.1 3.6 28 541-568 11-38 (44)
120 2l2t_A Receptor tyrosine-prote 27.1 1.2E+02 0.0041 19.0 4.4 29 541-569 10-38 (44)
121 2jwa_A Receptor tyrosine-prote 25.5 1.3E+02 0.0043 18.9 4.2 26 542-567 13-38 (44)
122 3gvo_A Pumilio 2, pumilio homo 24.2 77 0.0026 30.4 4.9 97 70-179 68-166 (351)
123 3gvo_A Pumilio 2, pumilio homo 21.2 80 0.0027 30.2 4.4 95 72-179 34-130 (351)
124 3ixz_A Potassium-transporting 20.2 2.2E+02 0.0075 31.9 8.2 18 549-566 1004-1021(1034)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=6.8e-54 Score=446.69 Aligned_cols=349 Identities=24% Similarity=0.286 Sum_probs=281.5
Q ss_pred CHHHHHHHHcCCcHHHHHhhhhcCCc-cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHH
Q 008102 4 DPLLYEAAAKGEIEPFKEISNVLGRV-VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVA 82 (577)
Q Consensus 4 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~-~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A 82 (577)
.++|+.|+..|+.+++++|++.+.+. ..+..|.||||+|+..|+ .+++++|++ .+..++.++..|.||||+|
T Consensus 15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~---~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 87 (437)
T 1n11_A 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGH---TEVAKYLLQ----NKAKVNAKAKDDQTPLHCA 87 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTC---HHHHHHHHH----HTCCSSCCCTTSCCHHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC---HHHHHHHHh----CCCCCCCCCCCCCCHHHHH
Confidence 57899999999999999999998877 555689999999999999 999999988 4677888999999999999
Q ss_pred HHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHH
Q 008102 83 AKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPL 162 (577)
Q Consensus 83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL 162 (577)
+..|+.++|++|++.+++. +..+..|.||||+|++.|+.+++++|++++.+.. ..+..|.|||
T Consensus 88 ~~~g~~~~v~~Ll~~ga~~----------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L 150 (437)
T 1n11_A 88 ARIGHTNMVKLLLENNANP----------------NLATTAGHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPL 150 (437)
T ss_dssp HHHTCHHHHHHHHHHTCCT----------------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHH
T ss_pred HHCCCHHHHHHHHhCCCCC----------------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCCHH
Confidence 9999999999999998763 4567778888888888888888888888776654 4566678888
Q ss_pred HHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHH
Q 008102 163 YMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIA 242 (577)
Q Consensus 163 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v 242 (577)
|+|+..|+.+++++|+++|++++..+..|.||||.|+.. ++.+++++|++.+.+ ++..+..|.||||+|+..|+.+++
T Consensus 151 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~ 228 (437)
T 1n11_A 151 HVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH-NNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVA 228 (437)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHT-TCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHH
Confidence 888888888888888888888877777888888888887 788888888887776 566677788888888888888888
Q ss_pred HHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhcccccc
Q 008102 243 ELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVR 322 (577)
Q Consensus 243 ~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~ 322 (577)
++|++.+.+++ ..+..|.||||+|+..|+.+++++|++++++ .+..|..|+||||+|+..++.+++++|+++ |
T Consensus 229 ~~Ll~~g~~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----g 301 (437)
T 1n11_A 229 RSLLQYGGSAN--AESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKH----G 301 (437)
T ss_dssp HHHHHTTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHH----T
T ss_pred HHHHHcCCCCC--CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC----C
Confidence 88888777654 2334677888888888888888888877777 567777788888888888888888888777 7
Q ss_pred ccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh-cCCcchHHHHHH
Q 008102 323 NLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR-YGFPQLEQEIRE 386 (577)
Q Consensus 323 ~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~-~~~~~~~~~l~~ 386 (577)
.++|.+|..|+||||+|+..+ ...+.++|+++|+|+|.+|..|.||+++|. .++.+++++|.+
T Consensus 302 ~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~ 365 (437)
T 1n11_A 302 VMVDATTRMGYTPLHVASHYG-NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365 (437)
T ss_dssp CCTTCCCSSCCCHHHHHHHSS-CSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCCCCCCCCCHHHHHHHcC-cHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHH
Confidence 777777888888888888777 455666777778888888888888888877 677777777776
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.1e-53 Score=443.06 Aligned_cols=351 Identities=24% Similarity=0.278 Sum_probs=324.7
Q ss_pred CCHHHHHHHHcCCcHHHHHhhhhcCCc-cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHH
Q 008102 3 MDPLLYEAAAKGEIEPFKEISNVLGRV-VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHV 81 (577)
Q Consensus 3 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~-~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~ 81 (577)
..++|+.|++.|+.+++++|++.+.++ ..+.+|.||||+|+..|+ .+++++|++. +..++..+..|.||||+
T Consensus 47 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~----ga~~~~~~~~g~t~L~~ 119 (437)
T 1n11_A 47 VETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGH---TNMVKLLLEN----NANPNLATTAGHTPLHI 119 (437)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTC---HHHHHHHHHH----TCCTTCCCTTCCCHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCC---HHHHHHHHhC----CCCCCCCCCCCCcHHHH
Confidence 357899999999999999999998887 556689999999999999 9999999883 66778889999999999
Q ss_pred HHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChH
Q 008102 82 AAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETP 161 (577)
Q Consensus 82 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp 161 (577)
|+..|+.+++++|++.+.+ .+..+..|.||||+|+..|+.+++++|++++.+++ ..+..|.||
T Consensus 120 A~~~g~~~~v~~Ll~~~~~----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~ 182 (437)
T 1n11_A 120 AAREGHVETVLALLEKEAS----------------QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLTP 182 (437)
T ss_dssp HHHHTCHHHHHHHHHTTCC----------------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSCCCH
T ss_pred HHHcCCHHHHHHHHhCCCC----------------CcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCH
Confidence 9999999999999997655 34578889999999999999999999999998875 678889999
Q ss_pred HHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHH
Q 008102 162 LYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNII 241 (577)
Q Consensus 162 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~ 241 (577)
||+|+..|+.+++++|++++++++..+..|.||||.|+.. ++.+++++|++.+.+ .+..+..|.||||+|+..|+.++
T Consensus 183 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~ 260 (437)
T 1n11_A 183 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ-NQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEM 260 (437)
T ss_dssp HHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHHH
Confidence 9999999999999999999999999999999999999999 999999999999987 68889999999999999999999
Q ss_pred HHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccc
Q 008102 242 AELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIV 321 (577)
Q Consensus 242 v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~ 321 (577)
+++|++.+.+.+ ..+..|.||||+|+..|+.+++++|++++.+ ++..|..|+||||+|+..|+.+++++|+++
T Consensus 261 v~~Ll~~~~~~~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---- 333 (437)
T 1n11_A 261 VALLLSKQANGN--LGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQH---- 333 (437)
T ss_dssp HHHHHTTTCCTT--CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHT----
T ss_pred HHHHHhcCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHhc----
Confidence 999999998875 3345799999999999999999999999988 788999999999999999999999999998
Q ss_pred cccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh-cCCcchHHHHHHH
Q 008102 322 RNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR-YGFPQLEQEIREL 387 (577)
Q Consensus 322 ~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~-~~~~~~~~~l~~~ 387 (577)
|+++|.+|..|+||||+|+..+ ...+.++|+++|+|++.+|.+|.||+++|. .++.++++.|+..
T Consensus 334 gad~n~~~~~g~t~L~~A~~~g-~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~ 399 (437)
T 1n11_A 334 QADVNAKTKLGYSPLHQAAQQG-HTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV 399 (437)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHCC-hHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc
Confidence 9999999999999999999999 577788888999999999999999999999 7888888888763
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=6.2e-42 Score=343.68 Aligned_cols=292 Identities=20% Similarity=0.163 Sum_probs=213.4
Q ss_pred CCCccceeeeecCCccchHHHHHHHHHHhhCccccccccC-CCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccch
Q 008102 34 NKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNA-KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVEST 112 (577)
Q Consensus 34 ~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~-~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~ 112 (577)
+|+|+||.|+.+|+ .++|++|++ .+..++.++. .|.||||+|+..|+.++|++|++.|++
T Consensus 24 ~~~t~L~~Av~~g~---~~~V~~LL~----~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~------------ 84 (337)
T 4g8k_A 24 EDNHLLIKAVQNED---VDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD------------ 84 (337)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------
T ss_pred CCChHHHHHHHcCC---HHHHHHHHH----CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc------------
Confidence 45778888888888 888888876 3566666554 478888888888888888888887765
Q ss_pred HHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCC-----
Q 008102 113 ARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE----- 187 (577)
Q Consensus 113 ~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~----- 187 (577)
++.++..+.+|++.++..++.+++..+++.+.+++ ..|..|.||||+|+..|+.+++++|+++|++++..
T Consensus 85 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~ 159 (337)
T 4g8k_A 85 ----PVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 159 (337)
T ss_dssp ----TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-
T ss_pred ----hhhhccCCCchhHHHHhcccchhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcccc
Confidence 34567778888888888888888888887777765 56777888888888888888888888887766542
Q ss_pred -----CCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCc----HHHHHHHhcCCCCccchhcC
Q 008102 188 -----GPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDR----NIIAELLLNSDKSLAYIVDN 258 (577)
Q Consensus 188 -----~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~~~~~~ 258 (577)
+..|.||||.|+.. |+.+++++|+++....++..|..|.||++.++..+. ..++++|+++|++++. .+
T Consensus 160 ~~~~~~~~g~T~L~~A~~~-g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~--~d 236 (337)
T 4g8k_A 160 DQERLRKGGATALMDAAEK-GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV--RG 236 (337)
T ss_dssp ----CTTCSCCHHHHHHHH-TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTC--CC
T ss_pred ccccccCCCCcHHHHHHHC-CCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCC--cC
Confidence 34577888888888 888888888865333367777888888877665433 4577778888777652 23
Q ss_pred CCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHH
Q 008102 259 DRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338 (577)
Q Consensus 259 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~ 338 (577)
..|.||||+|+..|+.++++.|++.....++.+|..|+||||+|+..|+.+++++|+++ |+++|.+ ||||+
T Consensus 237 ~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~----GAd~n~~-----~~L~~ 307 (337)
T 4g8k_A 237 ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR----GASTDCG-----DLVMT 307 (337)
T ss_dssp GGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT----SCSSTTC-----CHHHH
T ss_pred CCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC----CCCCCCC-----CHHHH
Confidence 36778888888888888888888764444777788888888888888888888888877 7766543 48888
Q ss_pred HHHhCCccceeccccCcccchhhh
Q 008102 339 LAALCRDSFHRIVPWNVGGDYQAV 362 (577)
Q Consensus 339 A~~~~~~~~~~~lL~~~g~d~~~~ 362 (577)
|++.+ ...+.++|+++|||+|..
T Consensus 308 A~~~~-~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 308 ARRNY-DHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp HHHTT-CHHHHHHHHHTTCCC---
T ss_pred HHHcC-CHHHHHHHHHCcCCCCCC
Confidence 88877 456667777888887753
No 4
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.8e-42 Score=349.41 Aligned_cols=309 Identities=18% Similarity=0.132 Sum_probs=267.8
Q ss_pred cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccc
Q 008102 30 VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGV 109 (577)
Q Consensus 30 ~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~ 109 (577)
..+..+.++||.|+..|+ .+.++.+ +...+..++.+|..|.||||+|+..|+.++|++|++.|++
T Consensus 19 ~~~~~~~~~L~~A~~~g~---~~~v~~l---l~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--------- 83 (351)
T 3utm_A 19 LTGEYKKDELLEAARSGN---EEKLMAL---LTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD--------- 83 (351)
T ss_dssp HHHHHHHHHHHHHHHHTC---HHHHHHH---CCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC---------
T ss_pred eeccccchhHHHHHHcCC---HHHHHHH---HHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------
Confidence 334467899999999999 9988888 4456777888999999999999999999999999998765
Q ss_pred cchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCC
Q 008102 110 ESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGP 189 (577)
Q Consensus 110 ~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 189 (577)
++.+|..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus 84 -------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 155 (351)
T 3utm_A 84 -------VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC 155 (351)
T ss_dssp -------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred -------CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC
Confidence 46688899999999999999999999999988876 6788899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhh
Q 008102 190 SGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAA 269 (577)
Q Consensus 190 ~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~ 269 (577)
.|.+|++.++.. +..+.+++... .+++..++..++.+.++.++....... ..+..|.||||+|+
T Consensus 156 ~g~~~l~~a~~~-~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~t~L~~A~ 219 (351)
T 3utm_A 156 HGKSAVDMAPTP-ELRERLTYEFK-------------GHSLLQAAREADLAKVKKTLALEIINF--KQPQSHETALHCAV 219 (351)
T ss_dssp TSCCHHHHCSSH-HHHHHHHHHHH-------------HHHHHHHHHTTCHHHHHHHTTTCCTTC--CCTTTCCCHHHHHH
T ss_pred CCCcchHHHhhh-hhHHHHHhhhc-------------ccHHHHHHHhccHHHHHHHHHhhcccc--cCCCCCCCHHHHHH
Confidence 999999999877 66666666543 246778888889999888888765432 33457899999999
Q ss_pred hc---CcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCcc
Q 008102 270 GQ---GKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDS 346 (577)
Q Consensus 270 ~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~ 346 (577)
.. +..+++++|++.+.+ ++.+|..|+||||+|+..++.+++++|+++ |+++|.+|..|+||||+|+..+ ..
T Consensus 220 ~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~n~~d~~g~t~L~~A~~~~-~~ 293 (351)
T 3utm_A 220 ASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKH----GAKMNALDSLGQTALHRAALAG-HL 293 (351)
T ss_dssp HCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHHT-CH
T ss_pred HHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHC----CCCCCCcCCCCCCHHHHHHHcC-cH
Confidence 99 668999999999998 788999999999999999999999999998 9999999999999999999999 57
Q ss_pred ceeccccCcccchhhhhhCCCChHHHHhcCCcchHHHHHH
Q 008102 347 FHRIVPWNVGGDYQAVNKQNISVKHITRYGFPQLEQEIRE 386 (577)
Q Consensus 347 ~~~~lL~~~g~d~~~~n~~G~t~l~~a~~~~~~~~~~l~~ 386 (577)
.+.++|+++|+|++.+|..|+||+++|. ..+.++|.+
T Consensus 294 ~~v~~Ll~~gad~~~~~~~g~tal~~a~---~~~~~~l~~ 330 (351)
T 3utm_A 294 QTCRLLLSYGSDPSIISLQGFTAAQMGN---EAVQQILSE 330 (351)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHSC---HHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCCCCCChhhhhh---HHHHHHHHh
Confidence 7788889999999999999999999984 455566665
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.9e-41 Score=331.37 Aligned_cols=265 Identities=21% Similarity=0.208 Sum_probs=233.7
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccC-CCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCc
Q 008102 74 KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMT-NDEKNTALHEAMQHRSLDVVKILIKEDPAVPY 152 (577)
Q Consensus 74 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~ 152 (577)
+|.||||.|++.|+.+++++|++.+.+. +.. +..|.||||+|+..|+.+++++|++++.++.
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~- 66 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANV----------------NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV- 66 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCT----------------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCc----------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-
Confidence 5789999999999999999999987552 333 7789999999999999999999999988875
Q ss_pred CCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccC----------
Q 008102 153 STNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGET---------- 222 (577)
Q Consensus 153 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~---------- 222 (577)
..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+.. ++.+++++|++.+.+ .+..
T Consensus 67 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~-~~~~~~~~~~~~~~ 144 (285)
T 1wdy_A 67 LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY-GKVKALKFLYKRGAN-VNLRRKTKEDQERL 144 (285)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCCCCHHHHHT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHh-CCHHHHHHHHHhCCC-cccccccHHHHHhh
Confidence 6788899999999999999999999999999999999999999999999 999999999999877 3444
Q ss_pred CCCCCcHHHHHHhcCcHHHHHHHhcC-CCCccchhcCCCCCcchhHhhhcCc----HHHHHHHHhhCCcccccccCCCCc
Q 008102 223 DRYGWTPLHYASYFDRNIIAELLLNS-DKSLAYIVDNDRKMTALHLAAGQGK----LRVVEEIISYCPECCELVDGRGWN 297 (577)
Q Consensus 223 d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~tpL~~A~~~g~----~~iv~~Ll~~~~~~~~~~d~~g~t 297 (577)
+..|.||||.|+..|+.+++++|++. +.+++ ..+..|.||||.|+..++ .+++++|++++.+ ++.+|..|+|
T Consensus 145 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~-~~~~~~~g~t 221 (285)
T 1wdy_A 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVN--ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKT 221 (285)
T ss_dssp TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT--CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCC
T ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCC--ccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC-CCCcCCCCCc
Confidence 77899999999999999999999987 77664 334478999999999998 8999999999988 7888999999
Q ss_pred hhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhh
Q 008102 298 VLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNK 364 (577)
Q Consensus 298 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~ 364 (577)
|||+|+..++.+++++|+++ .+.++|.+|.+|+||||+|+..+ ...+.++|+++|++++.+|.
T Consensus 222 ~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~l~~A~~~~-~~~i~~~Ll~~Ga~~~~~d~ 284 (285)
T 1wdy_A 222 PLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLAVELK-LKKIAELLCKRGASTDCGDL 284 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHHSSCSCCSSC
T ss_pred HHHHHHHcCCHHHHHHHHhc---cCCCccccCCCCCcHHHHHHHcC-cHHHHHHHHHcCCCCCcccc
Confidence 99999999999999999983 28899999999999999999998 67778888999999998773
No 6
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=3e-40 Score=331.35 Aligned_cols=289 Identities=20% Similarity=0.176 Sum_probs=252.7
Q ss_pred CHHHHHHHHcCCcHHHHHhhhhcCCc--cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHH
Q 008102 4 DPLLYEAAAKGEIEPFKEISNVLGRV--VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHV 81 (577)
Q Consensus 4 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~--~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~ 81 (577)
++.|+.|++.|++++|++|++.|.++ ..+..|.||||+|+.+|+ .+++++|++ .+..++.++..+.++++.
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~---~~iv~~Ll~----~ga~~~~~~~~~~~~~~~ 98 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR---EDIVELLLR----HGADPVLRKKNGATPFIL 98 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC---HHHHHHHHH----TTCCTTCCCTTCCCHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCC---HHHHHHHHH----cCCchhhhccCCCchhHH
Confidence 46799999999999999999999887 344469999999999999 999999988 578888999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCc---------
Q 008102 82 AAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPY--------- 152 (577)
Q Consensus 82 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~--------- 152 (577)
++..++..++..+++.+.+ ++..|..|.||||+|+..|+.+++++|++++++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~----------------~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~ 162 (337)
T 4g8k_A 99 AAIAGSVKLLKLFLSKGAD----------------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE 162 (337)
T ss_dssp HHHHTCHHHHHHHHTTTCC----------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC----
T ss_pred HHhcccchhhHHhhhccch----------------hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccc
Confidence 9999999999999887654 567899999999999999999999999999887642
Q ss_pred CCCCCCChHHHHHHHhCCHHHHHHHHH-hCCCCCCCCCCCCCHHHHHHHcCCC---HHHHHHHHhhCCCccccCCCCCCc
Q 008102 153 STNGCGETPLYMAAERGFEKMLTEILE-NCPSVAHEGPSGKTALHAAAVNINS---IDVVKLLLDKKKSLIGETDRYGWT 228 (577)
Q Consensus 153 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~---~~~~~~Ll~~~~~~~~~~d~~g~t 228 (577)
..+..|.||||+|+..|+.+++++|++ .|++++..+..|.|++|.++..... .+++++|++.+.+ ++.+|..|+|
T Consensus 163 ~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad-~n~~d~~g~t 241 (337)
T 4g8k_A 163 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKT 241 (337)
T ss_dssp -CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC-TTCCCGGGCC
T ss_pred cccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC-CCCcCCCCCC
Confidence 234568999999999999999999996 4899999999999999998876222 4688999999988 7889999999
Q ss_pred HHHHHHhcCcHHHHHHHhcC-CCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCC
Q 008102 229 PLHYASYFDRNIIAELLLNS-DKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFD 307 (577)
Q Consensus 229 pL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~ 307 (577)
|||+|+..|+.++++.|++. +.+++ ..+..|.||||+|+..|+.+++++|+++|++ + ++.+|||+|+.+++
T Consensus 242 ~L~~a~~~~~~~~v~~Ll~~~~~~vn--~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd-~-----n~~~~L~~A~~~~~ 313 (337)
T 4g8k_A 242 PLILAVEKKHLGLVQRLLEQEHIEIN--DTDSDGKTALLLAVELKLKKIAELLCKRGAS-T-----DCGDLVMTARRNYD 313 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHTSTTCCTT--CBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS-S-----TTCCHHHHHHHTTC
T ss_pred HHHHHHHhhhhHHHHHHHHhcCCccc--CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-C-----CCCCHHHHHHHcCC
Confidence 99999999999999999985 55554 3345899999999999999999999999987 3 34679999999999
Q ss_pred hhHHHHHHhccccccccccCC
Q 008102 308 ASDLKHLLNNYPIVRNLINDK 328 (577)
Q Consensus 308 ~~~v~~Ll~~~~~~~~~~n~~ 328 (577)
.+++++|+++ |+++|..
T Consensus 314 ~~iv~~Ll~~----GA~~d~~ 330 (337)
T 4g8k_A 314 HSLVKVLLSH----GAKEDFH 330 (337)
T ss_dssp HHHHHHHHHT----TCCC---
T ss_pred HHHHHHHHHC----cCCCCCC
Confidence 9999999999 8888754
No 7
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-41 Score=345.54 Aligned_cols=315 Identities=18% Similarity=0.150 Sum_probs=221.6
Q ss_pred CCHHHHHHHHcCCcHHHHHhhhhcCCccccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHH
Q 008102 3 MDPLLYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVA 82 (577)
Q Consensus 3 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A 82 (577)
+.++|..|+..|+.+.+..+++....... -.++++-+...|+ .+++++++. +..+..|.||||+|
T Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~---~~~~~~~~~---------~~~~~~g~t~L~~A 101 (373)
T 2fo1_E 37 SQHSLLEASYDGYIKRQRNELQHYSLYPN---PQGYGNGNDFLGD---FNHTNLQIP---------TEPEPESPIKLHTE 101 (373)
T ss_dssp ------------------------------------------------------------------------CCCHHHHH
T ss_pred cccccccccCCccccchhhhhhhhccccC---ccccCCCCCcccc---ccccccccc---------cCCCCCCccHHHHH
Confidence 56778888888898888888875443321 1345667788888 888777643 35688999999999
Q ss_pred HHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCC-CCCCcHhHHHHHcCCHHHHHHHH--------hcCCCCCcC
Q 008102 83 AKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTN-DEKNTALHEAMQHRSLDVVKILI--------KEDPAVPYS 153 (577)
Q Consensus 83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll--------~~~~~~~~~ 153 (577)
+..++ +++++|+.. .++..| ..|.||||+|+..|+.+++++|+ +.|.+++ .
T Consensus 102 a~~~~-~~~~~L~~~------------------~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn-~ 161 (373)
T 2fo1_E 102 AAGSY-AITEPITRE------------------SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN-A 161 (373)
T ss_dssp HHSSS-CCCSCCSTT------------------TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT-C
T ss_pred hcCCc-hHHHHhccc------------------cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCc-C
Confidence 99654 777777542 145566 78999999999999998887776 6777775 6
Q ss_pred CCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCC--CccccCCCCCCcHHH
Q 008102 154 TNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKK--SLIGETDRYGWTPLH 231 (577)
Q Consensus 154 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~--~~~~~~d~~g~tpL~ 231 (577)
.|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+++++|++.+. ...+..|..|.||||
T Consensus 162 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~ 240 (373)
T 2fo1_E 162 MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN-RDFGMMVYMLNSTKLKGDIEELDRNGMTALM 240 (373)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT-TCHHHHHHHTTSHHHHHTTSCCCTTSCCHHH
T ss_pred CCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHC-CCHHHHHHHHhcCccccChhhcCCCCCCHHH
Confidence 788899999999999999999999999999999999999999999999 99999999999872 236888999999999
Q ss_pred HHHhcC---cHHHHHHHhcCCCCccch------hcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHH
Q 008102 232 YASYFD---RNIIAELLLNSDKSLAYI------VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFA 302 (577)
Q Consensus 232 ~A~~~g---~~~~v~~Ll~~~~~~~~~------~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A 302 (577)
+|+..+ +.+++++|++.+.+++.. ..+..|.||||+|+..|+.+++++|+++++..++.+|..|+||||+|
T Consensus 241 ~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A 320 (373)
T 2fo1_E 241 IVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA 320 (373)
T ss_dssp HHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHH
T ss_pred HHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHH
Confidence 999988 899999999998887531 12347899999999999999999999888555888999999999999
Q ss_pred HhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccc
Q 008102 303 MVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGD 358 (577)
Q Consensus 303 ~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d 358 (577)
+..|+.+++++|+++ |+++|.+|..|+||||+|+..+ ...+.++|+++|++
T Consensus 321 ~~~g~~~iv~~Ll~~----gad~~~~d~~g~t~l~~A~~~g-~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 321 AQEGRIEVVMYLIQQ----GASVEAVDATDHTARQLAQANN-HHNIVDIFDRCRPE 371 (373)
T ss_dssp HHHTCHHHHHHHHHT----TCCSSCCCSSSCCHHHHHHHTT-CHHHHHHHHTTC--
T ss_pred HHcCCHHHHHHHHHc----CCCccCCCCCCCCHHHHHHHcC-CHHHHHHHHhcCcc
Confidence 999999999999998 8999999999999999999998 56677777777765
No 8
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4e-40 Score=321.88 Aligned_cols=265 Identities=22% Similarity=0.215 Sum_probs=234.6
Q ss_pred CCCccceeeeecCCccchHHHHHHHHHHhhCccccccc-cCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccch
Q 008102 34 NKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSV-NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVEST 112 (577)
Q Consensus 34 ~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~-~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~ 112 (577)
+|+|+||.|+..|+ .+++++|++ .+..++.. +..|.||||+|+..|+.+++++|++.+++
T Consensus 4 ~g~~~L~~A~~~g~---~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------ 64 (285)
T 1wdy_A 4 EDNHLLIKAVQNED---VDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD------------ 64 (285)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------
T ss_pred ccchHHHHHHHcCC---HHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------------
Confidence 46789999999999 999999977 34555555 78899999999999999999999998765
Q ss_pred HHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCC-----
Q 008102 113 ARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE----- 187 (577)
Q Consensus 113 ~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~----- 187 (577)
++.+|.+|.||||+|+..|+.+++++|++++.++. ..+..|.||||+|+..|+.+++++|+++|++++..
T Consensus 65 ----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~ 139 (285)
T 1wdy_A 65 ----PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139 (285)
T ss_dssp ----TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCH
T ss_pred ----CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHH
Confidence 35678899999999999999999999999988875 67888999999999999999999999999988876
Q ss_pred -----CCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCc----HHHHHHHhcCCCCccchhcC
Q 008102 188 -----GPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDR----NIIAELLLNSDKSLAYIVDN 258 (577)
Q Consensus 188 -----~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~~~~~~ 258 (577)
+..|.||||.|+.. ++.+++++|++.....++..|..|.||||.|+..++ .+++++|++.+.+++ ..+
T Consensus 140 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~--~~~ 216 (285)
T 1wdy_A 140 DQERLRKGGATALMDAAEK-GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN--VRG 216 (285)
T ss_dssp HHHHTTCCCCCHHHHHHHH-TCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS--CCC
T ss_pred HHHhhccCCCcHHHHHHHc-CCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCC--CcC
Confidence 77899999999999 999999999998444478899999999999999999 899999999998875 334
Q ss_pred CCCCcchhHhhhcCcHHHHHHHHh-hCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCC
Q 008102 259 DRKMTALHLAAGQGKLRVVEEIIS-YCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDK 330 (577)
Q Consensus 259 ~~g~tpL~~A~~~g~~~iv~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~ 330 (577)
..|.||||+|+..|+.+++++|++ .+.+ ++.+|..|+||||+|+..++.+++++|+++ |++++.+|.
T Consensus 217 ~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~----Ga~~~~~d~ 284 (285)
T 1wdy_A 217 ERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKR----GASTDCGDL 284 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH----SSCSCCSSC
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhccCCC-ccccCCCCCcHHHHHHHcCcHHHHHHHHHc----CCCCCcccc
Confidence 579999999999999999999999 5555 888999999999999999999999999998 999998874
No 9
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=8.7e-40 Score=329.71 Aligned_cols=318 Identities=21% Similarity=0.161 Sum_probs=265.2
Q ss_pred CHHHHHHHHcCCcHHHHHhhhh-cCCc-cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHH
Q 008102 4 DPLLYEAAAKGEIEPFKEISNV-LGRV-VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHV 81 (577)
Q Consensus 4 ~~~L~~Aa~~g~~~~v~~Ll~~-~~~~-~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~ 81 (577)
.++|+.|++.|+.+.+++|+.. +.+. ..+..|.||||+|+.+|+ .+++++|++ .+..++.++..|.||||+
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~----~g~~~~~~~~~g~t~L~~ 97 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNR---VRIVQLLLQ----HGADVHAKDKGGLVPLHN 97 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTC---HHHHHHHHH----TTCCTTCCCTTCCCHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC---HHHHHHHHH----cCCCCCccCCCCCcHHHH
Confidence 4689999999999999999986 4555 555689999999999999 999999987 577889999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChH
Q 008102 82 AAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETP 161 (577)
Q Consensus 82 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp 161 (577)
|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|++++.+.. ..+..|.+|
T Consensus 98 A~~~g~~~iv~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~~~ 160 (351)
T 3utm_A 98 ACSYGHYEVTELLLKHGAC----------------VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LVNCHGKSA 160 (351)
T ss_dssp HHHTTCHHHHHHHHHTTCC----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCH
T ss_pred HHHCCCHHHHHHHHHCCCC----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCcc
Confidence 9999999999999998766 46688999999999999999999999999998875 678889999
Q ss_pred HHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhc---Cc
Q 008102 162 LYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYF---DR 238 (577)
Q Consensus 162 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~---g~ 238 (577)
+++|+..+..+.+++.... +++..++.. ++.+.++.++..... ....+..|.||||+|+.. ++
T Consensus 161 l~~a~~~~~~~~~~~~~~~------------~~~~~~~~~-~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~ 226 (351)
T 3utm_A 161 VDMAPTPELRERLTYEFKG------------HSLLQAARE-ADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKR 226 (351)
T ss_dssp HHHCSSHHHHHHHHHHHHH------------HHHHHHHHT-TCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTH
T ss_pred hHHHhhhhhHHHHHhhhcc------------cHHHHHHHh-ccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCccH
Confidence 9999999988888887753 467778888 889999888887665 456778899999999999 66
Q ss_pred HHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhcc
Q 008102 239 NIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNY 318 (577)
Q Consensus 239 ~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~ 318 (577)
.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|++++.+ ++.+|..|+||||+|+..++.+++++|+++
T Consensus 227 ~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~- 302 (351)
T 3utm_A 227 KQVAELLLRKGANVN--EKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSY- 302 (351)
T ss_dssp HHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-
T ss_pred HHHHHHHHHcCCCcC--CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-
Confidence 899999999998875 3345899999999999999999999999988 788999999999999999999999999998
Q ss_pred ccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh
Q 008102 319 PIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR 374 (577)
Q Consensus 319 ~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~ 374 (577)
|++++.+|..|+||+|+|. ..+.++|.+.+. .....+.+++..|+
T Consensus 303 ---gad~~~~~~~g~tal~~a~-----~~~~~~l~~~~~---~~~~~~~~~l~~A~ 347 (351)
T 3utm_A 303 ---GSDPSIISLQGFTAAQMGN-----EAVQQILSESTP---MRTSDVDYRLLEAS 347 (351)
T ss_dssp ---TCCTTCCCTTSCCHHHHSC-----HHHHHHHHHC-------------------
T ss_pred ---CCCCCCcCCCCCChhhhhh-----HHHHHHHHhccc---cccCcceeehhhhh
Confidence 9999999999999999983 334445544332 23334445555444
No 10
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.8e-39 Score=315.01 Aligned_cols=271 Identities=18% Similarity=0.106 Sum_probs=196.9
Q ss_pred ccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCC
Q 008102 71 VNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAV 150 (577)
Q Consensus 71 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~ 150 (577)
....|.|+||+|+..|+.+.+..++..+........ .....++.+|..|.||||+|+..|+.+++++|++.+.++
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~ 85 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIR-----LLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV 85 (285)
T ss_dssp -------------------------------CCSEE-----CCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchh-----hhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 456789999999999998877777766533111000 001125678999999999999999999999999999887
Q ss_pred CcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHH
Q 008102 151 PYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPL 230 (577)
Q Consensus 151 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL 230 (577)
+ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+++++|++.+.+. +. +..|.|||
T Consensus 86 ~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~-~~-~~~g~t~L 161 (285)
T 3d9h_A 86 N-IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS-GSWDCVNLLLQHGASV-QP-ESDLASPI 161 (285)
T ss_dssp C-EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCS-SC-SCTTSCHH
T ss_pred C-CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CHHHHHHHHHHCCCCC-CC-CCCCCCHH
Confidence 5 6788899999999999999999999999999999999999999999999 9999999999998873 33 44599999
Q ss_pred HHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhH
Q 008102 231 HYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASD 310 (577)
Q Consensus 231 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~ 310 (577)
|+|+..|+.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|++.+++ ++ .|..|+||||+|+..++.++
T Consensus 162 ~~A~~~g~~~~v~~Ll~~g~~~~--~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~-~~~~g~t~L~~A~~~~~~~~ 237 (285)
T 3d9h_A 162 HEAARRGHVECVNSLIAYGGNID--HKISHLGTPLYLACENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVVRTASEEL 237 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTT--CCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC-TT-CCBTTBCHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC-CC-CCCCCCCHHHHHHHcCCHHH
Confidence 99999999999999999988775 3344788999999999999999999999888 44 48889999999999999999
Q ss_pred HHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCc-ccchhh
Q 008102 311 LKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNV-GGDYQA 361 (577)
Q Consensus 311 v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~-g~d~~~ 361 (577)
+++|+++ |++++.+|.+|+||||+|+.. ..+.++|+++ |+++..
T Consensus 238 v~~Ll~~----gad~~~~d~~g~t~l~~A~~~---~~~~~~Ll~~~~a~l~~ 282 (285)
T 3d9h_A 238 ACLLMDF----GADTQAKNAEGKRPVELVPPE---SPLAQLFLEREGASLPK 282 (285)
T ss_dssp HHHHHHT----TCCTTCCCTTSCCGGGGSCTT---SHHHHHHHHHC------
T ss_pred HHHHHHC----CCCCCCcCCCCCCHHHHhcCc---cHHHHHHHHhhccCCCC
Confidence 9999988 889999999999999999833 3344444444 666543
No 11
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.5e-39 Score=313.34 Aligned_cols=253 Identities=19% Similarity=0.162 Sum_probs=206.3
Q ss_pred CCCCCcHhHHHHHcCCHHHHHHHHhcCCC----------CCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCC
Q 008102 121 NDEKNTALHEAMQHRSLDVVKILIKEDPA----------VPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPS 190 (577)
Q Consensus 121 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~----------~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 190 (577)
...|.|+||+|+..|+.+.+..++..++. .....+..|.||||+|+..|+.+++++|++.|++++.++..
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~ 91 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD 91 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTT
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence 45789999999999998777776654322 23457888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhh
Q 008102 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAG 270 (577)
Q Consensus 191 g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~ 270 (577)
|.||||+|+.. |+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+.++. .+ ..|.||||+|+.
T Consensus 92 g~t~L~~A~~~-g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~-~~g~t~L~~A~~ 166 (285)
T 3d9h_A 92 HVSPLHEACLG-GHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PE-SDLASPIHEAAR 166 (285)
T ss_dssp CCCHHHHHHHT-TCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CS-CTTSCHHHHHHH
T ss_pred CCCHHHHHHHC-CcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CC-CCCCCHHHHHHH
Confidence 99999999999 999999999999887 78899999999999999999999999999998874 23 369999999999
Q ss_pred cCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceec
Q 008102 271 QGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRI 350 (577)
Q Consensus 271 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~ 350 (577)
.|+.+++++|++.+++ ++.+|..|+||||+|+..++.+++++|+++ |+++|. |..|+||||+|+..+ ...+.+
T Consensus 167 ~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~----ga~~~~-~~~g~t~L~~A~~~~-~~~~v~ 239 (285)
T 3d9h_A 167 RGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLES----GADVNQ-GKGQDSPLHAVVRTA-SEELAC 239 (285)
T ss_dssp HTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHT----TCCTTC-CBTTBCHHHHHHHTT-CHHHHH
T ss_pred cCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHC----CCCCCC-CCCCCCHHHHHHHcC-CHHHHH
Confidence 9999999999999998 788999999999999999999999999998 888885 899999999999999 567778
Q ss_pred cccCcccchhhhhhCCCChHHHHhcCCcchHHHHHH
Q 008102 351 VPWNVGGDYQAVNKQNISVKHITRYGFPQLEQEIRE 386 (577)
Q Consensus 351 lL~~~g~d~~~~n~~G~t~l~~a~~~~~~~~~~l~~ 386 (577)
+|+++|+|++.+|..|+||+++|. ++.++++.|.+
T Consensus 240 ~Ll~~gad~~~~d~~g~t~l~~A~-~~~~~~~~Ll~ 274 (285)
T 3d9h_A 240 LLMDFGADTQAKNAEGKRPVELVP-PESPLAQLFLE 274 (285)
T ss_dssp HHHHTTCCTTCCCTTSCCGGGGSC-TTSHHHHHHHH
T ss_pred HHHHCCCCCCCcCCCCCCHHHHhc-CccHHHHHHHH
Confidence 888999999999999999999998 45677777776
No 12
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=306.02 Aligned_cols=244 Identities=19% Similarity=0.129 Sum_probs=216.4
Q ss_pred CCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcC
Q 008102 123 EKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNI 202 (577)
Q Consensus 123 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 202 (577)
+|+||||+|+..|+.+++++|++++.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~- 79 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVN-IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS- 79 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-
Confidence 58999999999999999999999998875 7888899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHh
Q 008102 203 NSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282 (577)
Q Consensus 203 ~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~ 282 (577)
++.+++++|++.+.+. + .+..|.||||+|+..|+.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|++
T Consensus 80 ~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 155 (261)
T 2xai_A 80 GSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYGGNID--HKISHLGTPLYLACENQQRACVKKLLE 155 (261)
T ss_dssp TCHHHHHHHHHTTCCS-S-CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC--cCCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999873 3 35569999999999999999999999998875 334579999999999999999999999
Q ss_pred hCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCccc-----
Q 008102 283 YCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGG----- 357 (577)
Q Consensus 283 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~----- 357 (577)
++++ ++ .|..|+||||+|+..++.+++++|+++ |++++.+|.+|+||||+|+..+ .+.++|++++.
T Consensus 156 ~g~~-~~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~----gad~~~~d~~g~tpl~~A~~~~---~~~~~ll~~~~~~~l~ 226 (261)
T 2xai_A 156 SGAD-VN-QGKGQDSPLHAVARTASEELACLLMDF----GADTQAKNAEGKRPVELVPPES---PLAQLFLEREGPPSLM 226 (261)
T ss_dssp HTCC-TT-CCBTTBCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCCGGGGSCTTC---THHHHHHHC-CCCCHH
T ss_pred cCCC-CC-CCCCCCChHHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCCChhhhccccc---cHHHHHHhccCCccHH
Confidence 9998 44 388999999999999999999999998 9999999999999999999654 35556665554
Q ss_pred ---chhhhhhCCCChHHHHh-cCCcchH
Q 008102 358 ---DYQAVNKQNISVKHITR-YGFPQLE 381 (577)
Q Consensus 358 ---d~~~~n~~G~t~l~~a~-~~~~~~~ 381 (577)
+++.+|..|.||++.+. ...++.+
T Consensus 227 ~~~~~~~r~~~g~t~l~~~~~~~~p~~l 254 (261)
T 2xai_A 227 QLCRLRIRKCFGIQQHHKITKLVLPEDL 254 (261)
T ss_dssp HHHHHHHHTTSCTTCGGGGGGSSSCHHH
T ss_pred HHHHHHHHHHhchhccccCcccCCcHHH
Confidence 67899999999999998 3344433
No 13
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=8.5e-39 Score=308.51 Aligned_cols=253 Identities=19% Similarity=0.175 Sum_probs=222.5
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcC
Q 008102 74 KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS 153 (577)
Q Consensus 74 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~ 153 (577)
+|.||||+|+..|+.+++++|++.+.+ ++.+|.+|.||||+|+..|+.+++++|++++.+++ .
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~ 64 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWA----------------VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN-G 64 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC----------------SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-C
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCC----------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-C
Confidence 689999999999999999999998655 46789999999999999999999999999998875 6
Q ss_pred CCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHH
Q 008102 154 TNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYA 233 (577)
Q Consensus 154 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A 233 (577)
.|..|.||||+|+..|+.+++++|+++|++++. +..|.||||.|+.. ++.+++++|++.+.+ ++..|..|.||||+|
T Consensus 65 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A 141 (261)
T 2xai_A 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARR-GHVECVNSLIAYGGN-IDHKISHLGTPLYLA 141 (261)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCBTTTBCHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHc-CcHHHHHHHHHcCCC-CCcCCCCCCCHHHHH
Confidence 788999999999999999999999999999875 45699999999999 999999999999988 788999999999999
Q ss_pred HhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHH
Q 008102 234 SYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKH 313 (577)
Q Consensus 234 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~ 313 (577)
+..|+.+++++|++.+.+++ . +..|.||||+|+..|+.+++++|++++++ ++.+|..|+||+|+|+.+ .+++++
T Consensus 142 ~~~~~~~~v~~Ll~~g~~~~--~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpl~~A~~~--~~~~~~ 215 (261)
T 2xai_A 142 CENQQRACVKKLLESGADVN--Q-GKGQDSPLHAVARTASEELACLLMDFGAD-TQAKNAEGKRPVELVPPE--SPLAQL 215 (261)
T ss_dssp HHTTCHHHHHHHHHHTCCTT--C-CBTTBCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGSCTT--CTHHHH
T ss_pred HHhCCHHHHHHHHHcCCCCC--C-CCCCCChHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCChhhhcccc--ccHHHH
Confidence 99999999999999999886 2 44899999999999999999999999998 789999999999999954 458888
Q ss_pred HHhccccc----cccccCCCCCCCcHHHHHHHhCCccceeccc
Q 008102 314 LLNNYPIV----RNLINDKDKEGNTPLHLLAALCRDSFHRIVP 352 (577)
Q Consensus 314 Ll~~~~~~----~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL 352 (577)
|+++.... ...++.+|..|+||||+|.+......+..+|
T Consensus 216 ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~~l 258 (261)
T 2xai_A 216 FLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFL 258 (261)
T ss_dssp HHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCHHHHHHH
T ss_pred HHhccCCccHHHHHHHHHHHHhchhccccCcccCCcHHHHHHH
Confidence 88862211 2356788999999999999876544444433
No 14
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-39 Score=331.36 Aligned_cols=308 Identities=15% Similarity=0.097 Sum_probs=222.4
Q ss_pred CccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHH
Q 008102 36 NTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQ 115 (577)
Q Consensus 36 ~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~ 115 (577)
..+|+.++..|+ .+.++.+++.... +. .-.+++.-+...|+.+++++++..
T Consensus 38 ~~~l~~~~~~~~---~~~~~~~~~~~~~----~~----~~~~~~~~~~~~g~~~~~~~~~~~------------------ 88 (373)
T 2fo1_E 38 QHSLLEASYDGY---IKRQRNELQHYSL----YP----NPQGYGNGNDFLGDFNHTNLQIPT------------------ 88 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccCCcc---ccchhhhhhhhcc----cc----CccccCCCCCcccccccccccccc------------------
Confidence 456777777788 7777666542111 10 223456677788888888887653
Q ss_pred hhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHH--------HhCCCCCCC
Q 008102 116 MLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL--------ENCPSVAHE 187 (577)
Q Consensus 116 ~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll--------~~~~~~~~~ 187 (577)
.++..|.||||+|+..++ ++++.|+.. +++...+..|.||||+|+..|+.+++++|+ +.|++++..
T Consensus 89 ---~~~~~g~t~L~~Aa~~~~-~~~~~L~~~--~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~ 162 (373)
T 2fo1_E 89 ---EPEPESPIKLHTEAAGSY-AITEPITRE--SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM 162 (373)
T ss_dssp --------CCCHHHHHHHSSS-CCCSCCSTT--TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC
T ss_pred ---CCCCCCccHHHHHhcCCc-hHHHHhccc--cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Confidence 357889999999999665 788888654 343233378999999999999988877776 789999999
Q ss_pred CCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCC---CCccchhcCCCCCcc
Q 008102 188 GPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSD---KSLAYIVDNDRKMTA 264 (577)
Q Consensus 188 ~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~---~~~~~~~~~~~g~tp 264 (577)
|..|.||||+|+.. |+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+ .+++ ..+..|.||
T Consensus 163 d~~g~TpL~~A~~~-g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~--~~d~~g~t~ 238 (373)
T 2fo1_E 163 DCDENTPLMLAVLA-RRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE--ELDRNGMTA 238 (373)
T ss_dssp CTTSCCHHHHHHHH-TCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTS--CCCTTSCCH
T ss_pred CCCCCCHHHHHHHc-ChHHHHHHHHHCCCC-CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChh--hcCCCCCCH
Confidence 99999999999999 999999999999988 6889999999999999999999999999987 3443 334589999
Q ss_pred hhHhhhcC---cHHHHHHHHhhCCcccc-------cccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCc
Q 008102 265 LHLAAGQG---KLRVVEEIISYCPECCE-------LVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNT 334 (577)
Q Consensus 265 L~~A~~~g---~~~iv~~Ll~~~~~~~~-------~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T 334 (577)
||+|+..+ +.+++++|++++++... ..|..|+||||+|+..|+.+++++|+++ .+.++|.+|.+|+|
T Consensus 239 L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~---~~~~~n~~d~~g~T 315 (373)
T 2fo1_E 239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE---KGSNKDKQDEDGKT 315 (373)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHH---SCCCTTCCCTTCCC
T ss_pred HHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHh---cCCCccCcCCCCCC
Confidence 99999998 89999999999988321 3677999999999999999999999987 24899999999999
Q ss_pred HHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh-cCCcchHHHHHH
Q 008102 335 PLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR-YGFPQLEQEIRE 386 (577)
Q Consensus 335 pLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~-~~~~~~~~~l~~ 386 (577)
|||+|+..| ...+.++|+++|+|++.+|..|+||+++|. .++.+++++|.+
T Consensus 316 pL~~A~~~g-~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~ 367 (373)
T 2fo1_E 316 PIMLAAQEG-RIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 367 (373)
T ss_dssp HHHHHHHHT-CHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHcC-CHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 999999999 567778888999999999999999999999 889999998887
No 15
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.5e-39 Score=328.34 Aligned_cols=263 Identities=20% Similarity=0.131 Sum_probs=200.1
Q ss_pred ccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhc
Q 008102 67 LLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKE 146 (577)
Q Consensus 67 ~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~ 146 (577)
..+..|..|.||||+|+..|+.++|++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.
T Consensus 12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~----------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 75 (364)
T 3ljn_A 12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVS----------------PTIQNRFGCTALHLACKFGCVDTAKYLASV 75 (364)
T ss_dssp ----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTCCCHHHHHHHHCCHHHHHHHHHH
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHC
Confidence 3456788889999999999999999999987655 466788899999999999999999999999
Q ss_pred CCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHh----CCCCCC-----------------CCCCCCCHHHHHHHcCC--
Q 008102 147 DPAVPYSTNGCGETPLYMAAERGFEKMLTEILEN----CPSVAH-----------------EGPSGKTALHAAAVNIN-- 203 (577)
Q Consensus 147 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~----~~~~~~-----------------~~~~g~t~L~~A~~~~~-- 203 (577)
+++. .+..|.||||+|+..|+.+++++|++. +.+++. .+..|.||||+|+.. |
T Consensus 76 g~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-g~~ 151 (364)
T 3ljn_A 76 GEVH---SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGL-GPE 151 (364)
T ss_dssp CCCC---CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHS-CGG
T ss_pred CCCc---cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHc-CCc
Confidence 8854 334688999999999999999999998 666655 667788888888888 7
Q ss_pred CHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCC-----ccchhcCCCCCcchhHhhhcCcHHHHH
Q 008102 204 SIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKS-----LAYIVDNDRKMTALHLAAGQGKLRVVE 278 (577)
Q Consensus 204 ~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~~~g~tpL~~A~~~g~~~iv~ 278 (577)
+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+++ ++ ..+..|.||||+|+..|+.++++
T Consensus 152 ~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--~~~~~g~t~L~~A~~~g~~~~v~ 228 (364)
T 3ljn_A 152 YLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLD--YANKQGNSHLHWAILINWEDVAM 228 (364)
T ss_dssp GHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTT--CCCTTCCCTTHHHHTTTCHHHHH
T ss_pred hHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccc--ccCCCCCcHHHHHHHcCCHHHHH
Confidence 78888888888776 677788888888888888888888888887766 43 23346888888888888888888
Q ss_pred HHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccc--------cccccCCCCCCCcHHHHHHHhCCccceec
Q 008102 279 EIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIV--------RNLINDKDKEGNTPLHLLAALCRDSFHRI 350 (577)
Q Consensus 279 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~--------~~~~n~~d~~G~TpLh~A~~~~~~~~~~~ 350 (577)
+|++++++ ++.+|..|+||||+|+..|+.+++++|+++.... .......+..|+|||+.|+..++...+..
T Consensus 229 ~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ 307 (364)
T 3ljn_A 229 RFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQ 307 (364)
T ss_dssp HHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHH
T ss_pred HHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHH
Confidence 88888877 6778888888888888888888888888762111 11111245566777777776664444444
Q ss_pred ccc
Q 008102 351 VPW 353 (577)
Q Consensus 351 lL~ 353 (577)
+|.
T Consensus 308 ll~ 310 (364)
T 3ljn_A 308 LLQ 310 (364)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 16
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=6.4e-38 Score=300.96 Aligned_cols=220 Identities=20% Similarity=0.207 Sum_probs=153.3
Q ss_pred hccCCCCCCcHhHHHHHcC-------------CHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCC
Q 008102 117 LGMTNDEKNTALHEAMQHR-------------SLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPS 183 (577)
Q Consensus 117 l~~~~~~g~t~Lh~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 183 (577)
++.+|.+|.||||+|+..| +.+++++|++.++++....|..|.||||+|+..|+.+++++|+++|++
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 5678999999999999987 889999999999888777788899999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCc
Q 008102 184 VAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMT 263 (577)
Q Consensus 184 ~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t 263 (577)
++..+..|.||||+|+.. ++.+++++|++.+....+..+..|.||||+|+..|+.+++++|++.+.+++ ..+..|.|
T Consensus 83 ~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~d~~g~t 159 (253)
T 1yyh_A 83 ANIQDNMGRTPLHAAVSA-DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN--AVDDLGKS 159 (253)
T ss_dssp TTCCCTTSCCHHHHHHHH-TCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT--CBCTTSCB
T ss_pred CCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC--CcCCCCCC
Confidence 999999999999999999 899999999998875578888888888888888888888888888887765 23346778
Q ss_pred chhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhC
Q 008102 264 ALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALC 343 (577)
Q Consensus 264 pL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~ 343 (577)
|||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..++.+++++|+++ |++++.+|..|+||||+|++.|
T Consensus 160 ~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~----ga~~~~~d~~g~tpl~~A~~~g 234 (253)
T 1yyh_A 160 ALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDH----FANRDITDHMDRLPRDIAQERM 234 (253)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHc----CCCccccccCCCCHHHHHHHcC
Confidence 88888888888888888887777 667777788888888888888888888877 7777778888888888887777
Q ss_pred C
Q 008102 344 R 344 (577)
Q Consensus 344 ~ 344 (577)
+
T Consensus 235 ~ 235 (253)
T 1yyh_A 235 H 235 (253)
T ss_dssp C
T ss_pred C
Confidence 4
No 17
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.4e-37 Score=303.61 Aligned_cols=263 Identities=20% Similarity=0.143 Sum_probs=146.0
Q ss_pred cccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcC
Q 008102 68 LQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKED 147 (577)
Q Consensus 68 ~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 147 (577)
++.+|.+|.||||+|+..|+.++|++|++.+++. ..++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-------------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 68 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH-------------EYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS-------------GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-------------ccccccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 4678899999999999999999999999987652 125678899999999999999999999999999
Q ss_pred CCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCC
Q 008102 148 PAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGW 227 (577)
Q Consensus 148 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~ 227 (577)
++++ ..+..|.||||+|+..|+.+++++|++++++......... +. .. .......+.
T Consensus 69 a~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~--~~-----------------~~---~~~~~~~~~ 125 (282)
T 1oy3_D 69 AGVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY--LT-----------------QS---QDCTPDTSH 125 (282)
T ss_dssp CCSS-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------------------------------
T ss_pred CCCC-CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHH--hh-----------------cc---cccCcchhc
Confidence 8876 6788899999999999999999999998876432211100 00 00 001112233
Q ss_pred cHHHHHHhcCcHHHH-HHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccC-CCCchhhHHHhc
Q 008102 228 TPLHYASYFDRNIIA-ELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDG-RGWNVLHFAMVS 305 (577)
Q Consensus 228 tpL~~A~~~g~~~~v-~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~ 305 (577)
++++.++..+..... ..+...+.+++ ..+..|.||||+|+..|+.+++++|++++++ ++..+. .|+||||+|+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~ 202 (282)
T 1oy3_D 126 APAAVDSQPNPENEEEPRDEDWRLQLE--AENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEA 202 (282)
T ss_dssp ------------------CCCGGGGTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHT
T ss_pred chhhhccccccchhhhhhhhhhhhcCC--CcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHc
Confidence 333333333222111 11212222221 1222455555555555555555555555554 333332 255555555555
Q ss_pred CChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh
Q 008102 306 FDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR 374 (577)
Q Consensus 306 ~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~ 374 (577)
++.+++++|+++ |+++|.+|..|+||||+|+..+ ...+.++|+++|++++.+|..|.||+++|.
T Consensus 203 ~~~~~v~~Ll~~----gad~~~~d~~g~tpL~~A~~~~-~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~ 266 (282)
T 1oy3_D 203 QAASVLELLLKA----GADPTARMYGGRTPLGSALLRP-NPILARLLRAHGAPEPEDGGDKLSPCSSSG 266 (282)
T ss_dssp TCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHTSS-CHHHHHHHHHTTCCCCCCC-----------
T ss_pred CCHHHHHHHHHc----CCCCcccccCCCCHHHHHHHcC-CcHHHHHHHHcCCCcCcCCCcccccccccC
Confidence 555555555554 5555555555555555555555 344444555555555555555555555554
No 18
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=5e-37 Score=294.72 Aligned_cols=229 Identities=21% Similarity=0.247 Sum_probs=181.1
Q ss_pred cccccCCCCcHHHHHHHhC-------------CHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHc
Q 008102 68 LQSVNAKGDAPLHVAAKCG-------------HASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134 (577)
Q Consensus 68 ~~~~~~~g~t~Lh~A~~~g-------------~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~ 134 (577)
++.+|.+|.||||+|+..| +.+++++|++.+++. ....|..|.||||+|+..
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~---------------~~~~d~~g~t~L~~A~~~ 67 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL---------------HNQTDRTGETALHLAARY 67 (253)
T ss_dssp ----------------------------------------------------------------CCCTTSCCHHHHHHHT
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCc---------------ccccCCCCCcHHHHHHHc
Confidence 4667788888888888876 899999999987663 234688999999999999
Q ss_pred CCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCC-CCCCCCCCCCCHHHHHHHcCCCHHHHHHHHh
Q 008102 135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCP-SVAHEGPSGKTALHAAAVNINSIDVVKLLLD 213 (577)
Q Consensus 135 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~ 213 (577)
|+.+++++|++++.+++ ..+..|.||||+|+..|+.+++++|++++. +++..+..|.||||.|+.. ++.+++++|++
T Consensus 68 g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~ 145 (253)
T 1yyh_A 68 SRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-AVEGMLEDLIN 145 (253)
T ss_dssp TCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHH-TCSSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHc-ChHHHHHHHHH
Confidence 99999999999998876 678889999999999999999999999996 8899999999999999999 99999999999
Q ss_pred hCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccC
Q 008102 214 KKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDG 293 (577)
Q Consensus 214 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~ 293 (577)
.+.+ ++..|..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|++++++ ++.+|.
T Consensus 146 ~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~ 221 (253)
T 1yyh_A 146 SHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDH 221 (253)
T ss_dssp TTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCT
T ss_pred cCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-cccccc
Confidence 9888 78899999999999999999999999999999876 3345899999999999999999999999999 788999
Q ss_pred CCCchhhHHHhcCChhHHHHHHhc
Q 008102 294 RGWNVLHFAMVSFDASDLKHLLNN 317 (577)
Q Consensus 294 ~g~t~Lh~A~~~~~~~~v~~Ll~~ 317 (577)
.|+||+|+|+.+|+.+++++|...
T Consensus 222 ~g~tpl~~A~~~g~~~i~~~l~~~ 245 (253)
T 1yyh_A 222 MDRLPRDIAQERMHHDIVRLLDLE 245 (253)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999876
No 19
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=8.9e-37 Score=290.67 Aligned_cols=231 Identities=19% Similarity=0.136 Sum_probs=199.5
Q ss_pred hccCCCCCCcHhHHHHHcCCHHHHHHHHh----cCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCC
Q 008102 117 LGMTNDEKNTALHEAMQHRSLDVVKILIK----EDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGK 192 (577)
Q Consensus 117 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~ 192 (577)
++.+|.+|.||||+|++.|+.+++++|++ .+.++ ...|..|.||||+|+..|+.+++++|++.|++++..+..|.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 80 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ 80 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Confidence 35689999999999999999999999997 45554 47788899999999999999999999999999999999999
Q ss_pred CHHHHHHHcCCCHHHHHHHHhhCCC---ccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhh
Q 008102 193 TALHAAAVNINSIDVVKLLLDKKKS---LIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAA 269 (577)
Q Consensus 193 t~L~~A~~~~~~~~~~~~Ll~~~~~---~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~ 269 (577)
||||.|+.. ++.+++++|++.+.. ..+..|..|.||||+|+..|+.+++++|++.+.+++.. +...|.||||+|+
T Consensus 81 t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~~g~t~L~~A~ 158 (241)
T 1k1a_A 81 TAAHLACEH-RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV-DIKSGRSPLIHAV 158 (241)
T ss_dssp CHHHHHHHT-TCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTTCCCHHHHHH
T ss_pred CHHHHHHHc-CCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-cccCCCcHHHHHH
Confidence 999999999 999999999999872 36788899999999999999999999999999887532 2247899999999
Q ss_pred hcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCcccee
Q 008102 270 GQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHR 349 (577)
Q Consensus 270 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~ 349 (577)
..|+.+++++|++++++ ++..|..|+||||+|+..++.+++++|+++ |++++.+|..|+||||+|+..+ ...+.
T Consensus 159 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----ga~~~~~~~~g~tpl~~A~~~~-~~~i~ 232 (241)
T 1k1a_A 159 ENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRS----GADSSLKNCHNDTPLMVARSRR-VIDIL 232 (241)
T ss_dssp HTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCCTTTTCSSHH-HHHHH
T ss_pred HcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhc----CCCCCCcCCCCCCHHHHHHhcC-cHHHH
Confidence 99999999999999988 788899999999999999999999999998 9999999999999999999888 45555
Q ss_pred ccccCcc
Q 008102 350 IVPWNVG 356 (577)
Q Consensus 350 ~lL~~~g 356 (577)
+.|.+.+
T Consensus 233 ~~l~~~~ 239 (241)
T 1k1a_A 233 RGKATRP 239 (241)
T ss_dssp TC-----
T ss_pred hhhccCC
Confidence 5555544
No 20
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.5e-36 Score=288.47 Aligned_cols=219 Identities=24% Similarity=0.347 Sum_probs=182.5
Q ss_pred hccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHH
Q 008102 117 LGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALH 196 (577)
Q Consensus 117 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~ 196 (577)
++.+|.+|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 82 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH 82 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence 46688889999999999999999999999988775 66778999999999999999999999999998888889999999
Q ss_pred HHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHH
Q 008102 197 AAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRV 276 (577)
Q Consensus 197 ~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~i 276 (577)
.|+.. ++.+++++|++.++...+..+..|.||||+|+..|+.+++++|++.+.+++ ..+..|.||||+|+..|+.++
T Consensus 83 ~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~ 159 (237)
T 3b7b_A 83 LAAKK-GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN--IRDNEENICLHWAAFSGCVDI 159 (237)
T ss_dssp HHHHT-TCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHCCHHH
T ss_pred HHHHc-CCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--ccCCCCCCHHHHHHHCCCHHH
Confidence 99998 899999999998865577888888888888888888888888888887764 233467788888888888888
Q ss_pred HHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCC
Q 008102 277 VEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCR 344 (577)
Q Consensus 277 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~ 344 (577)
+++|++.+++ ++..|..|+||||+|+..++.+++++|+++ |++++.+|.+|+||||+|+..++
T Consensus 160 ~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----gad~~~~d~~g~t~l~~A~~~~~ 222 (237)
T 3b7b_A 160 AEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSR----DSDVTLKNKEGETPLQCASLNSQ 222 (237)
T ss_dssp HHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT----TCCTTCCCTTSCCHHHHSCTTCH
T ss_pred HHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHHc----CCCCCccCCCCCCHHHHHHHHHH
Confidence 8888888777 667777788888888888888888888877 77778888888888888877763
No 21
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.6e-37 Score=301.62 Aligned_cols=241 Identities=21% Similarity=0.166 Sum_probs=183.0
Q ss_pred hccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCC--CcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCH
Q 008102 117 LGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAV--PYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTA 194 (577)
Q Consensus 117 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~ 194 (577)
++.+|.+|.||||+|++.|+.+++++|++.+++. ....+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 81 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA 81 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 4678999999999999999999999999988763 34778889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcH
Q 008102 195 LHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKL 274 (577)
Q Consensus 195 L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~ 274 (577)
||+|+.. ++.+++++|++.++..... ... +. +..... .....+.++++.++..+..
T Consensus 82 L~~A~~~-~~~~~v~~Ll~~~~~~~~~-~~~--~~----------------~~~~~~----~~~~~~~~~~~~~~~~~~~ 137 (282)
T 1oy3_D 82 LHLACRV-RAHTCACVLLQPRPSHPRD-ASD--TY----------------LTQSQD----CTPDTSHAPAAVDSQPNPE 137 (282)
T ss_dssp HHHHTTT-TCHHHHHHHSSSCCSSCCC-C---------------------------------------------------
T ss_pred HHHHHHc-CCcchhHhhhccCCCCchh-hHH--HH----------------hhcccc----cCcchhcchhhhccccccc
Confidence 9999999 9999999999987762211 110 00 000111 1112466778877776655
Q ss_pred HHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCC-CCcHHHHHHHhCCccceecccc
Q 008102 275 RVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKE-GNTPLHLLAALCRDSFHRIVPW 353 (577)
Q Consensus 275 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~-G~TpLh~A~~~~~~~~~~~lL~ 353 (577)
.....++......++..|..|+||||+|+..|+.+++++|+++ |+++|.+|.. |+||||+|+..+ ...+.++|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~~g~tpL~~A~~~~-~~~~v~~Ll 212 (282)
T 1oy3_D 138 NEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA----GADLNKPEPTCGRTPLHLAVEAQ-AASVLELLL 212 (282)
T ss_dssp ------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH----TCCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHH
T ss_pred hhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc----CCCCCCCCCCCCcCHHHHHHHcC-CHHHHHHHH
Confidence 5554444444344788899999999999999999999999998 9999999865 999999999999 567778888
Q ss_pred CcccchhhhhhCCCChHHHHh-cCCcchHHHHHH
Q 008102 354 NVGGDYQAVNKQNISVKHITR-YGFPQLEQEIRE 386 (577)
Q Consensus 354 ~~g~d~~~~n~~G~t~l~~a~-~~~~~~~~~l~~ 386 (577)
++|+|++.+|..|.||+++|. .++.+++++|.+
T Consensus 213 ~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~ 246 (282)
T 1oy3_D 213 KAGADPTARMYGGRTPLGSALLRPNPILARLLRA 246 (282)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHH
T ss_pred HcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHH
Confidence 999999999999999999999 888899999887
No 22
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.8e-37 Score=313.26 Aligned_cols=258 Identities=17% Similarity=0.112 Sum_probs=224.0
Q ss_pred hccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHH
Q 008102 117 LGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALH 196 (577)
Q Consensus 117 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~ 196 (577)
.+..|.+|.||||+|+..|+.+++++|++++.+++ ..|..|.||||+|+..|+.+++++|+++|++++. ..|.||||
T Consensus 13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~ 89 (364)
T 3ljn_A 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPT-IQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIH 89 (364)
T ss_dssp ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHH
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHH
Confidence 45678899999999999999999999999998875 7888999999999999999999999999996553 57999999
Q ss_pred HHHHcCCCHHHHHHHHhh----CCCcccc-----------------CCCCCCcHHHHHHhcC--cHHHHHHHhcCCCCcc
Q 008102 197 AAAVNINSIDVVKLLLDK----KKSLIGE-----------------TDRYGWTPLHYASYFD--RNIIAELLLNSDKSLA 253 (577)
Q Consensus 197 ~A~~~~~~~~~~~~Ll~~----~~~~~~~-----------------~d~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~ 253 (577)
+|+.. ++.+++++|++. +.+ .+. .|..|.||||+|+..| +.+++++|++.+.+++
T Consensus 90 ~A~~~-g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~ 167 (364)
T 3ljn_A 90 LAVMA-NKTDLVVALVEGAKERGQM-PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT 167 (364)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHTCC-HHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT
T ss_pred HHHHc-CCHHHHHHHHHhccccCCC-HHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc
Confidence 99999 999999999998 444 333 7788999999999999 9999999999998875
Q ss_pred chhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcc----cccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCC
Q 008102 254 YIVDNDRKMTALHLAAGQGKLRVVEEIISYCPEC----CELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKD 329 (577)
Q Consensus 254 ~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~----~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d 329 (577)
..+..|.||||+|+..|+.+++++|++++++. ++..|..|+||||+|+..|+.+++++|+++ |+++|.+|
T Consensus 168 --~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----gad~~~~d 241 (364)
T 3ljn_A 168 --AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM----GIDVNMED 241 (364)
T ss_dssp --CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT----TCCTTCCC
T ss_pred --ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc----CCCCCCCC
Confidence 33458999999999999999999999998874 678899999999999999999999999998 99999999
Q ss_pred CCCCcHHHHHHHhCCccceeccccCcccchhh------------hhhCCCChHHHHh-cCCcchH-HHHHH
Q 008102 330 KEGNTPLHLLAALCRDSFHRIVPWNVGGDYQA------------VNKQNISVKHITR-YGFPQLE-QEIRE 386 (577)
Q Consensus 330 ~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~------------~n~~G~t~l~~a~-~~~~~~~-~~l~~ 386 (577)
.+|+||||+|+..+ ...+.++|+++|++++. .+..|.||+..|. .++.+.+ +.|.+
T Consensus 242 ~~g~tpL~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~ 311 (364)
T 3ljn_A 242 NEHTVPLYLSVRAA-MVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQE 311 (364)
T ss_dssp TTSCCHHHHHHHTC-CHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhC-hHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHH
Confidence 99999999999999 67778888888988766 5567788888777 4444433 44443
No 23
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.2e-36 Score=287.89 Aligned_cols=228 Identities=25% Similarity=0.298 Sum_probs=207.5
Q ss_pred CCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHH
Q 008102 121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAV 200 (577)
Q Consensus 121 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~ 200 (577)
+..++||||.|++.|+.+.+++|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+.
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 82 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS 82 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHH
Confidence 45688999999999999999999999887777889999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHH
Q 008102 201 NINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEI 280 (577)
Q Consensus 201 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~L 280 (577)
. ++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|
T Consensus 83 ~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~L 158 (231)
T 3aji_A 83 A-GXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYDATAMHRAAAKGNLKMVHIL 158 (231)
T ss_dssp H-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred c-CHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 9 999999999999888 68889999999999999999999999999988875 3344789999999999999999999
Q ss_pred HhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccc
Q 008102 281 ISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGD 358 (577)
Q Consensus 281 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d 358 (577)
++++.+ ++.+|..|+||||+|+..++.+++++|+++ |++++.+|..|.||||+|+..+ ...+.++|.++|++
T Consensus 159 l~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----ga~~~~~~~~g~t~l~~A~~~~-~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 159 LFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQ----GASIYIENKEEKTPLQVAKGGL-GLILKRLAEGEEAS 230 (231)
T ss_dssp HHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TCCSCCCCTTSCCHHHHSCHHH-HHHHHHHHHHHHHC
T ss_pred HhcCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHhhH-HHHHHHHHcccccc
Confidence 999888 788899999999999999999999999998 8999999999999999998876 56777777777665
No 24
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=3e-36 Score=286.96 Aligned_cols=232 Identities=24% Similarity=0.315 Sum_probs=204.2
Q ss_pred cccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcC
Q 008102 68 LQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKED 147 (577)
Q Consensus 68 ~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 147 (577)
++.+|.+|.||||+|+..|+.+++++|++...... ..++.+|..|.||||+|+..|+.+++++|++.+
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 69 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGG------------RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTT------------CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcC------------CCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 46789999999999999999999999998643321 225678999999999999999999999999999
Q ss_pred CCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCC----CCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCC
Q 008102 148 PAVPYSTNGCGETPLYMAAERGFEKMLTEILENCP----SVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETD 223 (577)
Q Consensus 148 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d 223 (577)
.++. ..+..|.||||+|+..|+.+++++|++.++ +++..+..|.||||.|+.. ++.+++++|++.+.+ .+..+
T Consensus 70 ~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~-~~~~~ 146 (241)
T 1k1a_A 70 ASPM-ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT-ECQETVQLLLERGAD-IDAVD 146 (241)
T ss_dssp CCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCC-TTCCC
T ss_pred CCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHc-CCHHHHHHHHHcCCC-ccccc
Confidence 8875 678889999999999999999999999997 7888999999999999999 999999999999988 56666
Q ss_pred -CCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHH
Q 008102 224 -RYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFA 302 (577)
Q Consensus 224 -~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A 302 (577)
..|.||||+|+..|+.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|
T Consensus 147 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A 223 (241)
T 1k1a_A 147 IKSGRSPLIHAVENNSLSMVQLLLQHGANVN--AQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVA 223 (241)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCTTTTC
T ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCcCCCCCCHHHHH
Confidence 889999999999999999999999998875 3345899999999999999999999999998 788999999999999
Q ss_pred HhcCChhHHHHHHhc
Q 008102 303 MVSFDASDLKHLLNN 317 (577)
Q Consensus 303 ~~~~~~~~v~~Ll~~ 317 (577)
+..++.++++.|.++
T Consensus 224 ~~~~~~~i~~~l~~~ 238 (241)
T 1k1a_A 224 RSRRVIDILRGKATR 238 (241)
T ss_dssp SSHHHHHHHTC----
T ss_pred HhcCcHHHHhhhccC
Confidence 999999999999876
No 25
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.3e-35 Score=281.99 Aligned_cols=228 Identities=26% Similarity=0.329 Sum_probs=202.3
Q ss_pred ccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhc
Q 008102 67 LLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKE 146 (577)
Q Consensus 67 ~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~ 146 (577)
.++..+..|.||||+|+..|+.+++++|++.|.+ ++..+..|.||||+|+..|+.+++++|+++
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 66 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN----------------IDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC----------------cCccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence 3567888999999999999999999999998665 456788899999999999999999999999
Q ss_pred CCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhC-CCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCC
Q 008102 147 DPAVPYSTNGCGETPLYMAAERGFEKMLTEILENC-PSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRY 225 (577)
Q Consensus 147 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~ 225 (577)
+.++. ..+..|.||||+|+..|+.+++++|++++ .+++..+..|.||||.|+.. ++.+++++|++.+.+ ++..|..
T Consensus 67 g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~-~~~~~~~ 143 (237)
T 3b7b_A 67 GALVD-PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY-KHVDLVKLLLSKGSD-INIRDNE 143 (237)
T ss_dssp TCCCC-CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTT
T ss_pred CCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCC-CCccCCC
Confidence 88765 67788999999999999999999999998 78888899999999999999 999999999998887 6888999
Q ss_pred CCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhc
Q 008102 226 GWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVS 305 (577)
Q Consensus 226 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 305 (577)
|.||||+|+..|+.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+.+
T Consensus 144 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~~~ 220 (237)
T 3b7b_A 144 ENICLHWAAFSGCVDIAEILLAAKCDLH--AVNIHGDSPLHIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCASLN 220 (237)
T ss_dssp SCCHHHHHHHHCCHHHHHHHHTTTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHSCTT
T ss_pred CCCHHHHHHHCCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC-CCccCCCCCCHHHHHHHH
Confidence 9999999999999999999999998875 3345799999999999999999999999988 788899999999999999
Q ss_pred CChhHHHHHHh
Q 008102 306 FDASDLKHLLN 316 (577)
Q Consensus 306 ~~~~~v~~Ll~ 316 (577)
++.+.+..+++
T Consensus 221 ~~~~~~~~l~~ 231 (237)
T 3b7b_A 221 SQVWSALQMSK 231 (237)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98876666554
No 26
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=3.6e-35 Score=277.67 Aligned_cols=225 Identities=20% Similarity=0.232 Sum_probs=208.3
Q ss_pred cCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCC
Q 008102 72 NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVP 151 (577)
Q Consensus 72 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~ 151 (577)
+..+.||||.|++.|+.++++.|++.+.. .++..|..|.||||+|+..|+.+++++|++.+.+++
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~---------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~ 67 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKS---------------LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGG---------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchh---------------hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC
Confidence 34678999999999999999999997432 256789999999999999999999999999998875
Q ss_pred cCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHH
Q 008102 152 YSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLH 231 (577)
Q Consensus 152 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~ 231 (577)
..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+.. ++.+++++|++.+.+ ++..|..|.||||
T Consensus 68 -~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~ 144 (231)
T 3aji_A 68 -DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGAN-PDAKDHYDATAMH 144 (231)
T ss_dssp -CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred -CcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC-CCCcCCCCCcHHH
Confidence 6788899999999999999999999999999999999999999999999 999999999999888 7888999999999
Q ss_pred HHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHH
Q 008102 232 YASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDL 311 (577)
Q Consensus 232 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v 311 (577)
+|+..|+.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|++++++ ++.+|..|+||+|+|+..++.+++
T Consensus 145 ~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~ 221 (231)
T 3aji_A 145 RAAAKGNLKMVHILLFYKASTN--IQDTEGNTPLHLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVAKGGLGLILK 221 (231)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHSCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCCCcc--ccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhhHHHHHH
Confidence 9999999999999999998875 3345899999999999999999999999998 788999999999999999999999
Q ss_pred HHHHhc
Q 008102 312 KHLLNN 317 (577)
Q Consensus 312 ~~Ll~~ 317 (577)
++|.++
T Consensus 222 ~lL~~~ 227 (231)
T 3aji_A 222 RLAEGE 227 (231)
T ss_dssp HHHHHH
T ss_pred HHHccc
Confidence 999987
No 27
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-36 Score=292.74 Aligned_cols=216 Identities=19% Similarity=0.187 Sum_probs=171.0
Q ss_pred cCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCC-------CcCCCCCCChHHHHHHHhCCH-HHHHHHHHhCCCCCCCCCC
Q 008102 119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAV-------PYSTNGCGETPLYMAAERGFE-KMLTEILENCPSVAHEGPS 190 (577)
Q Consensus 119 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-------~~~~~~~g~tpL~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~ 190 (577)
.+|..+.+||+.|++.|+.++|++|++.+.+. ....+..|.|||+.|+..+.. .+++.|++.|++++..|.+
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~ 85 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD 85 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence 46778889999999999999999999987653 234566789999999988775 4889999999999999999
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhh
Q 008102 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAG 270 (577)
Q Consensus 191 g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~ 270 (577)
|.||||+|+.. |+.+++++|++.+.+ ++..+..|.||+|.|+..++.+++++|++.+.+++ ..+..|.||||+|+.
T Consensus 86 G~TpLh~A~~~-g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n--~~d~~g~TpL~~A~~ 161 (269)
T 4b93_B 86 GSSPLHVAALH-GRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN--KKDLSGNTPLIYACS 161 (269)
T ss_dssp SCCHHHHHHHT-TCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTCCCHHHHHHH
T ss_pred CCCHHHHHHHc-CcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHH
Confidence 99999999999 999999999999988 78889999999999999999999999999998886 334589999999999
Q ss_pred cCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhC
Q 008102 271 QGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALC 343 (577)
Q Consensus 271 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~ 343 (577)
.|+.+++++|++++++ ++..|..|+||||+|+.+|+.+++++|+++ |+++|.+|.+|+||||+|++++
T Consensus 162 ~g~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~----Gad~~~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 162 GGHHELVALLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLLH----GASVQVLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp TTCGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHT----TCCSCCCCTTSCCSGGGSCTTC
T ss_pred CCCHHHHHHHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHHC----CCCCCCcCCCCCCHHHHHHhCC
Confidence 9999999999999998 788999999999999999999999999998 9999999999999999998776
No 28
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.9e-36 Score=297.06 Aligned_cols=277 Identities=19% Similarity=0.133 Sum_probs=227.3
Q ss_pred HHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCCh
Q 008102 81 VAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGET 160 (577)
Q Consensus 81 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t 160 (577)
.++..++.+.++.++............ ......+..|.||||.|+..|+.+++++|++++.+++ ..|..|.|
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t 75 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVK-------RKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLT 75 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCC-------CSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-CBCTTCCB
T ss_pred hHHHHHHHHHHHHHHcccccccccccc-------CcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCC
Confidence 567788888888888765432211110 0012234568899999999999999999999998876 67888999
Q ss_pred HHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHH
Q 008102 161 PLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNI 240 (577)
Q Consensus 161 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~ 240 (577)
|||+|+..|+.+++++|+++|++++..+..|.||||+|+.. |+.+++++|++.+.+ ++..|..|.||||+|+..++.+
T Consensus 76 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~-g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~ 153 (299)
T 1s70_B 76 ALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC-GYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEE 153 (299)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999 999999999999988 7888999999999999999999
Q ss_pred HHHHHhcC-CCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccc
Q 008102 241 IAELLLNS-DKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYP 319 (577)
Q Consensus 241 ~v~~Ll~~-~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~ 319 (577)
+++.++.. +.+... ... .+.+++ ...++.++..+.......+..|.||||+|+..|+.+++++|+++
T Consensus 154 ~~~~ll~~~~~~~~~-~~~-~~~~~~--------~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-- 221 (299)
T 1s70_B 154 LLQNEVNRQGVDIEA-ARK-EEERIM--------LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-- 221 (299)
T ss_dssp HHHHHHHHHTCCHHH-HHH-HHHHHH--------HHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT--
T ss_pred HHHHHHhhcCCCchh-hhh-hhhhHH--------HHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc--
Confidence 99988874 333221 111 122222 23456667777665667788999999999999999999999998
Q ss_pred cccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHhcCCcchHH
Q 008102 320 IVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITRYGFPQLEQ 382 (577)
Q Consensus 320 ~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~~~~~~~~~ 382 (577)
|+++|.+|.+|+||||+|+..+ ...+.++|+++|+|++.+|..|+||+++|..+..+.++
T Consensus 222 --g~d~~~~d~~g~tpL~~A~~~~-~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l~ 281 (299)
T 1s70_B 222 --RYDVNIKDYDGWTPLHAAAHWG-KEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLE 281 (299)
T ss_dssp --TCCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHH
T ss_pred --CCCCCCcCCCCCcHHHHHHhcC-CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999 56778888999999999999999999999754333333
No 29
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=3.3e-35 Score=277.28 Aligned_cols=211 Identities=20% Similarity=0.269 Sum_probs=175.4
Q ss_pred CCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhC--CCCCC-CCCCCCCHHHHHHH
Q 008102 124 KNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENC--PSVAH-EGPSGKTALHAAAV 200 (577)
Q Consensus 124 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~--~~~~~-~~~~g~t~L~~A~~ 200 (577)
|+||||+|++.|+.+++++|++.+++.....+..|.||||+|+..|+.+++++|+++| .+++. .+..|.||||.|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 6899999999999999999999998877778889999999999999999999999999 55555 77889999999999
Q ss_pred cCCCHHHHHHHHhhC--CCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHH
Q 008102 201 NINSIDVVKLLLDKK--KSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVE 278 (577)
Q Consensus 201 ~~~~~~~~~~Ll~~~--~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~ 278 (577)
. ++.+++++|++.+ .+ .+..+..|.||||.|+..|+.+++++|++++.+++ ..+..|.||||+|+..|+.++++
T Consensus 82 ~-~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~ 157 (228)
T 2dzn_A 82 V-GNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR--IKDKFNQIPLHRAASVGSLKLIE 157 (228)
T ss_dssp H-CCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHHHHHHTTCHHHHH
T ss_pred c-CCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc--ccCCCCCCHHHHHHHcCCHHHHH
Confidence 8 8999999999887 44 67778888888888888888888888888887765 33446888888888888888888
Q ss_pred HHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHH-hccccccccccCCCCCCCcHHHHHHHh
Q 008102 279 EIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLL-NNYPIVRNLINDKDKEGNTPLHLLAAL 342 (577)
Q Consensus 279 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll-~~~~~~~~~~n~~d~~G~TpLh~A~~~ 342 (577)
+|++.++..++.+|..|+||||+|+..++.+++++|+ +. |++++.+|.+|+||||+|+..
T Consensus 158 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~----ga~~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY----GAEYDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp HHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH----CCCSCCBCTTSCBGGGGCSST
T ss_pred HHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc----CCCCCccCCCCCcHHHHHHHH
Confidence 8888884447778888888888888888888888888 55 788888888888888888543
No 30
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.6e-36 Score=288.68 Aligned_cols=224 Identities=22% Similarity=0.241 Sum_probs=172.7
Q ss_pred cccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCH-HHHHHHHhcCC
Q 008102 70 SVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSL-DVVKILIKEDP 148 (577)
Q Consensus 70 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~~~ 148 (577)
.+|.++.+||+.||+.|+.++|++|++.++....+ ....++..+..|.||||.|+..++. .+++.|++.|.
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~--------~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Ga 77 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLED--------AEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGL 77 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC------------------------------------------------CCC
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccc--------ccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCC
Confidence 46777889999999999999999999976653221 1223566788999999999998876 48899999998
Q ss_pred CCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCc
Q 008102 149 AVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWT 228 (577)
Q Consensus 149 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t 228 (577)
+++ .+|..|.||||+|+..|+.+++++|++.+++++..+..|.||+|.|+.. ++.++++.|++.+.+ ++.+|..|+|
T Consensus 78 dvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~-~~~~~~~~Ll~~g~~-~n~~d~~g~T 154 (269)
T 4b93_B 78 GVN-VTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQ-GHFQVVKCLLDSNAK-PNKKDLSGNT 154 (269)
T ss_dssp CTT-CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCC-SCCCCTTCCC
T ss_pred CCC-CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCcccccccc-ChHHHHHHHHHCCCC-CCCCCCCCCC
Confidence 886 7888999999999999999999999999999999999999999999999 999999999999988 7899999999
Q ss_pred HHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCC
Q 008102 229 PLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFD 307 (577)
Q Consensus 229 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~ 307 (577)
|||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+++++
T Consensus 155 pL~~A~~~g~~~~v~~Ll~~gadvn--~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 155 PLIYACSGGHHELVALLLQHGASIN--ASNNKGNTALHEAVIEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp HHHHHHHTTCGGGHHHHHHTTCCTT--CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGSCTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCC--ccccCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHhCCc
Confidence 9999999999999999999999886 3445899999999999999999999999998 78999999999999988764
No 31
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.6e-34 Score=272.55 Aligned_cols=220 Identities=21% Similarity=0.293 Sum_probs=197.2
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcC--CCCCc
Q 008102 75 GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKED--PAVPY 152 (577)
Q Consensus 75 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~~ 152 (577)
|+||||.|++.|+.+++++|++.+... ....|..|.||||+|+..|+.+++++|++.+ .++..
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~ 66 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSL---------------LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD 66 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGG---------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGG
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccc---------------cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccc
Confidence 789999999999999999999986542 3457899999999999999999999999998 55554
Q ss_pred CCCCCCChHHHHHHHhCCHHHHHHHHHhC--CCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHH
Q 008102 153 STNGCGETPLYMAAERGFEKMLTEILENC--PSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPL 230 (577)
Q Consensus 153 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL 230 (577)
..+..|.||||+|+..|+.+++++|+++| ++++..+..|.||||.|+.. ++.+++++|++.+.+ ++..|..|.|||
T Consensus 67 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~-~~~~~~~g~t~L 144 (228)
T 2dzn_A 67 YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK-KWFEVSQFLIENGAS-VRIKDKFNQIPL 144 (228)
T ss_dssp CCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCC-SCCCCTTSCCHH
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHc-CCHhHHHHHHHcCCC-ccccCCCCCCHH
Confidence 47889999999999999999999999999 88899999999999999999 999999999999888 788999999999
Q ss_pred HHHHhcCcHHHHHHHhcCC-CCccchhcCCCCCcchhHhhhcCcHHHHHHHH-hhCCcccccccCCCCchhhHHHhcCCh
Q 008102 231 HYASYFDRNIIAELLLNSD-KSLAYIVDNDRKMTALHLAAGQGKLRVVEEII-SYCPECCELVDGRGWNVLHFAMVSFDA 308 (577)
Q Consensus 231 ~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll-~~~~~~~~~~d~~g~t~Lh~A~~~~~~ 308 (577)
|+|+..|+.+++++|++.+ .+++ ..+..|.||||+|+..|+.+++++|+ +.+.+ ++.+|..|+||+|+|+..
T Consensus 145 ~~A~~~~~~~~v~~Ll~~g~~~~~--~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~-~~~~~~~g~t~l~~A~~~--- 218 (228)
T 2dzn_A 145 HRAASVGSLKLIELLCGLGKSAVN--WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKAEDVALNE--- 218 (228)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCCSC--CCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC-SCCBCTTSCBGGGGCSST---
T ss_pred HHHHHcCCHHHHHHHHhcCccccc--CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCcHHHHHHHH---
Confidence 9999999999999999999 6554 33458999999999999999999999 88888 789999999999999654
Q ss_pred hHHHHHHhc
Q 008102 309 SDLKHLLNN 317 (577)
Q Consensus 309 ~~v~~Ll~~ 317 (577)
++.++|+++
T Consensus 219 ~~~~~l~~~ 227 (228)
T 2dzn_A 219 QVKKFFLNN 227 (228)
T ss_dssp THHHHHHTT
T ss_pred HHHHHHHhc
Confidence 667777654
No 32
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=274.59 Aligned_cols=229 Identities=23% Similarity=0.262 Sum_probs=203.0
Q ss_pred ccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCC
Q 008102 69 QSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDP 148 (577)
Q Consensus 69 ~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~ 148 (577)
+..|..|.||||.|+..|+.+++++|++.+.+ ++.++..|.||||+|+..|+.+++++|+++++
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYD----------------VRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCC----------------cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 45678899999999999999999999997655 45678889999999999999999999999999
Q ss_pred CCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCc
Q 008102 149 AVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWT 228 (577)
Q Consensus 149 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t 228 (577)
+.....+..|.||||+|+..|+.+++++|++.|++++..+..|.||||.|+.. ++.+++++|++.+.+ ++..+..|.|
T Consensus 67 ~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~~~~-~~~~~~~g~t 144 (240)
T 3eu9_A 67 IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF-GHTSIVAYLIAKGQD-VDMMDQNGMT 144 (240)
T ss_dssp CTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred cchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CHHHHHHHHHhcCCC-ccccCCCCCc
Confidence 88877777899999999999999999999999999999999999999999999 999999999999887 6888899999
Q ss_pred HHHHHHhcCc-HHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCC
Q 008102 229 PLHYASYFDR-NIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFD 307 (577)
Q Consensus 229 pL~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~ 307 (577)
|||.|+..++ .+++++|++.+.+++.. +...|.||||+|+..|+.+++++|++++++ ++..|..|+||||+|+..++
T Consensus 145 ~l~~a~~~~~~~~~~~~L~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~ 222 (240)
T 3eu9_A 145 PLMWAAYRTHSVDPTRLLLTFNVSVNLG-DKYHKNTALHWAVLAGNTTVISLLLEAGAN-VDAQNIKGESALDLAKQRKN 222 (240)
T ss_dssp HHHHHHHHCCSSTTHHHHHHTTCCTTCC-CTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCBCTTSCBHHHHHHHTTC
T ss_pred HHHHHHHhCChHHHHHHHHhcCCCcchh-hccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCc
Confidence 9999997666 78899999998887533 223688999999999999999999999888 67888999999999999999
Q ss_pred hhHHHHHHhc
Q 008102 308 ASDLKHLLNN 317 (577)
Q Consensus 308 ~~~v~~Ll~~ 317 (577)
.+++++|++.
T Consensus 223 ~~~v~~L~~~ 232 (240)
T 3eu9_A 223 VWMINHLQEA 232 (240)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999887
No 33
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-35 Score=292.50 Aligned_cols=241 Identities=22% Similarity=0.237 Sum_probs=205.7
Q ss_pred ccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCC
Q 008102 71 VNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAV 150 (577)
Q Consensus 71 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~ 150 (577)
.+.+|.||||.||..|+.++|++|++.|++ ++..|.+|.||||+|+..|+.+++++|+++|+++
T Consensus 36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~ 99 (299)
T 1s70_B 36 VKFDDGAVFLAACSSGDTEEVLRLLERGAD----------------INYANVDGLTALHQACIDDNVDMVKFLVENGANI 99 (299)
T ss_dssp CEECHHHHHHHHHHHTCHHHHHHHHHHCCC----------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred cccCCccHHHHHHHcCCHHHHHHHHHcCCC----------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 455778999999999999999999998765 4668899999999999999999999999999887
Q ss_pred CcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHH
Q 008102 151 PYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPL 230 (577)
Q Consensus 151 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL 230 (577)
+ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.++++.++.......+..+..+.+++
T Consensus 100 ~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 177 (299)
T 1s70_B 100 N-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE-AMEELLQNEVNRQGVDIEAARKEEERIM 177 (299)
T ss_dssp T-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH-HHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred C-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhc-chHHHHHHHHhhcCCCchhhhhhhhhHH
Confidence 6 6788899999999999999999999999999999999999999999999 9999999988765543333222233333
Q ss_pred HHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhH
Q 008102 231 HYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASD 310 (577)
Q Consensus 231 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~ 310 (577)
+ ..++.++..+..... ..+..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.++
T Consensus 178 ~--------~~~~~~l~~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~ 247 (299)
T 1s70_B 178 L--------RDARQWLNSGHINDV-RHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEA 247 (299)
T ss_dssp H--------HHHHHHHHHTCCCCC-CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHH
T ss_pred H--------HHHHHHHhccCcchh-hhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHH
Confidence 2 334455555544432 2334799999999999999999999999988 78899999999999999999999
Q ss_pred HHHHHhccccccccccCCCCCCCcHHHHHHHhC
Q 008102 311 LKHLLNNYPIVRNLINDKDKEGNTPLHLLAALC 343 (577)
Q Consensus 311 v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~ 343 (577)
+++|+++ |++++.+|..|+||||+|+...
T Consensus 248 v~~Ll~~----gad~~~~d~~g~t~l~~A~~~~ 276 (299)
T 1s70_B 248 CRILVEN----LCDMEAVNKVGQTAFDVADEDI 276 (299)
T ss_dssp HHHHHHT----TCCTTCCCTTSCCTTTSCCSGG
T ss_pred HHHHHHc----CCCCCCcCCCCCCHHHHHHHHH
Confidence 9999998 9999999999999999996543
No 34
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2.8e-34 Score=270.04 Aligned_cols=217 Identities=19% Similarity=0.164 Sum_probs=191.3
Q ss_pred cCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHh
Q 008102 134 HRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLD 213 (577)
Q Consensus 134 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~ 213 (577)
.|+.+++++|+++++++....|..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+.. ++.+++++|++
T Consensus 1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~ 79 (223)
T 2f8y_A 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA-DAQGVFQILIR 79 (223)
T ss_dssp ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHH
T ss_pred CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHH
Confidence 36788899999999998877788999999999999999999999999999999999999999999999 99999999999
Q ss_pred hCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccC
Q 008102 214 KKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDG 293 (577)
Q Consensus 214 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~ 293 (577)
.++...+..+..|.||||+|+..|+.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|++++++ ++.+|.
T Consensus 80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~ 156 (223)
T 2f8y_A 80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN--AVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNN 156 (223)
T ss_dssp BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT
T ss_pred cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc--CcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCC
Confidence 9886688889999999999999999999999999988875 3344789999999999999999999999888 778899
Q ss_pred CCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccch
Q 008102 294 RGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDY 359 (577)
Q Consensus 294 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~ 359 (577)
.|+||||+|+..++.+++++|+++ |++++.+|..|.||||+|+..+ ...+.++|+++|+..
T Consensus 157 ~g~t~L~~A~~~~~~~~v~~Ll~~----ga~~~~~~~~g~t~l~~A~~~~-~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 157 REETPLFLAAREGSYETAKVLLDH----FANRDITDHMDRLPRDIAQERM-HHDIVRLLDEYNLVR 217 (223)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHHTTCSS
T ss_pred CCcCHHHHHHHcCCHHHHHHHHHc----CCCCccccccCCCHHHHHHHhc-chHHHHHHHHcCCCc
Confidence 999999999999999999999998 8899999999999999999998 566677777777653
No 35
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=7.6e-34 Score=269.95 Aligned_cols=233 Identities=17% Similarity=0.154 Sum_probs=188.2
Q ss_pred ccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCC-CCCCCHHH
Q 008102 118 GMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEG-PSGKTALH 196 (577)
Q Consensus 118 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~ 196 (577)
+..|..|.||||.|++.|+.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|++++++++..+ ..|.||||
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~ 81 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVR-QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH 81 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence 3467788899999999999999999999887765 667789999999999999999999999998776544 44889999
Q ss_pred HHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCc-HH
Q 008102 197 AAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGK-LR 275 (577)
Q Consensus 197 ~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~-~~ 275 (577)
.|+.. ++.+++++|++.+.+ ++..+..|.||||.|+..|+.+++++|++.+.++. ..+..|.||||.|+..++ .+
T Consensus 82 ~A~~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~--~~~~~g~t~l~~a~~~~~~~~ 157 (240)
T 3eu9_A 82 WATRQ-GHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD--MMDQNGMTPLMWAAYRTHSVD 157 (240)
T ss_dssp HHHHH-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHCCSST
T ss_pred HHHHc-CCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc--ccCCCCCcHHHHHHHhCChHH
Confidence 99998 899999999988877 67788888999999999999999999998887765 334478888888886555 78
Q ss_pred HHHHHHhhCCcccccccC-CCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccC
Q 008102 276 VVEEIISYCPECCELVDG-RGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWN 354 (577)
Q Consensus 276 iv~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~ 354 (577)
++++|++.+++ ++..+. .|+||||+|+.+++.+++++|+++ |++++.+|..|+||||+|++.+ ...+.++|++
T Consensus 158 ~~~~L~~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~l~~A~~~~-~~~~v~~L~~ 231 (240)
T 3eu9_A 158 PTRLLLTFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLEA----GANVDAQNIKGESALDLAKQRK-NVWMINHLQE 231 (240)
T ss_dssp THHHHHHTTCC-TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH----TCCTTCBCTTSCBHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHhcCCC-cchhhccCCCcHHHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcC-cHHHHHHHHH
Confidence 88888888887 555565 788888888888888888888887 8888888888888888888888 5566666666
Q ss_pred cccchhh
Q 008102 355 VGGDYQA 361 (577)
Q Consensus 355 ~g~d~~~ 361 (577)
.|++...
T Consensus 232 ~~~~~~~ 238 (240)
T 3eu9_A 232 ARQAKGY 238 (240)
T ss_dssp HC-----
T ss_pred hhhccCc
Confidence 6665543
No 36
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.2e-34 Score=283.01 Aligned_cols=227 Identities=17% Similarity=0.107 Sum_probs=182.4
Q ss_pred hccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHH
Q 008102 117 LGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALH 196 (577)
Q Consensus 117 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~ 196 (577)
++.+|.+|.||||+|+..|+.+++++|++++.+++.. +|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus 24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~ 100 (285)
T 3kea_A 24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY 100 (285)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH
Confidence 4668888999999999999999999999988776533 4889999999999999999999999988888888999999
Q ss_pred HHHHcCCCHHHHHHHHhhCCCccccCCCCC-CcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHH
Q 008102 197 AAAVNINSIDVVKLLLDKKKSLIGETDRYG-WTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLR 275 (577)
Q Consensus 197 ~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g-~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~ 275 (577)
+|+.. ++.+++++|++.+.+ ++..+..| .||||+|+..|+.+++++|++++++.. +...|.||||+|+..|+.+
T Consensus 101 ~A~~~-g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~g~~~ 175 (285)
T 3kea_A 101 YAVDS-GNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF---DLAILLSCIHITIKNGHVD 175 (285)
T ss_dssp HHHHT-TCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC---CCSTHHHHHHHHHHTTCHH
T ss_pred HHHHc-CCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc---cccCCccHHHHHHHcChHH
Confidence 99988 889999999988877 67778888 788888888888888888888877652 2226778888888888888
Q ss_pred HHHHHHhhCCcccccccCCCCch-hhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccC
Q 008102 276 VVEEIISYCPECCELVDGRGWNV-LHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWN 354 (577)
Q Consensus 276 iv~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~ 354 (577)
++++|++++++ ++.+|..|+|| ||+|+..++.+++++|+++ |+++|.+|. .|+..+ ...+.++|++
T Consensus 176 ~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~----gad~~~~~~-------~a~~~~-~~~iv~~Ll~ 242 (285)
T 3kea_A 176 MMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFKY----DINIYSANL-------ENVLLD-DAEIAKMIIE 242 (285)
T ss_dssp HHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS----CBCSTTTTG-------GGGTTT-CHHHHHHHHH
T ss_pred HHHHHHHcCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHc----CCCCCCCCh-------hhhhcC-CHHHHHHHHH
Confidence 88888888777 67778888886 8888888888888888887 778877773 344455 5666677777
Q ss_pred cccchhhhhh
Q 008102 355 VGGDYQAVNK 364 (577)
Q Consensus 355 ~g~d~~~~n~ 364 (577)
+|++++..+.
T Consensus 243 ~g~~~~~~~~ 252 (285)
T 3kea_A 243 KHVEYKSDSY 252 (285)
T ss_dssp HHHHHTTCTT
T ss_pred cCCCCCCccc
Confidence 7777665443
No 37
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=4.7e-34 Score=278.75 Aligned_cols=229 Identities=17% Similarity=0.174 Sum_probs=201.6
Q ss_pred ccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhc
Q 008102 67 LLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKE 146 (577)
Q Consensus 67 ~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~ 146 (577)
.++.+|..|.||||+|+..|+.++|++|++.|++. +.. +|.||||+|+..|+.+++++|+++
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~----------------~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK----------------NLL--ENEFPLHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG----------------SCC--TTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC----------------CCC--CCCCHHHHHHHcCCHHHHHHHHHC
Confidence 47889999999999999999999999999987662 333 489999999999999999999999
Q ss_pred CCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCC-CCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCC
Q 008102 147 DPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSG-KTALHAAAVNINSIDVVKLLLDKKKSLIGETDRY 225 (577)
Q Consensus 147 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g-~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~ 225 (577)
|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..| .||||.|+.. ++.+++++|++.+++..+ ...
T Consensus 85 ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~--~~~ 160 (285)
T 3kea_A 85 GLDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML-NDVSIVSYFLSEIPSTFD--LAI 160 (285)
T ss_dssp TCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHT-TCHHHHHHHHTTSCTTCC--CST
T ss_pred CCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc-CCHHHHHHHHhCCCcccc--ccC
Confidence 99876 678899999999999999999999999999999999999 8999999999 999999999999876422 128
Q ss_pred CCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcc-hhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHh
Q 008102 226 GWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTA-LHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMV 304 (577)
Q Consensus 226 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tp-L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 304 (577)
|.||||+|+..|+.+++++|+++|++++ ..+..|.|| ||+|+..|+.+++++|+++|++ ++..| +.|+.
T Consensus 161 g~t~L~~A~~~g~~~~v~~Ll~~gad~n--~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad-~~~~~-------~~a~~ 230 (285)
T 3kea_A 161 LLSCIHITIKNGHVDMMILLLDYMTSTN--TNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN-IYSAN-------LENVL 230 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC--TTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC-STTTT-------GGGGT
T ss_pred CccHHHHHHHcChHHHHHHHHHcCCCCC--cccCCCCChHHHHHHHcCCHHHHHHHHHcCCC-CCCCC-------hhhhh
Confidence 9999999999999999999999988875 334478897 9999999999999999999988 55555 46788
Q ss_pred cCChhHHHHHHhccccccccccCCCCC
Q 008102 305 SFDASDLKHLLNNYPIVRNLINDKDKE 331 (577)
Q Consensus 305 ~~~~~~v~~Ll~~~~~~~~~~n~~d~~ 331 (577)
.++.+++++|+++ |.+++..+..
T Consensus 231 ~~~~~iv~~Ll~~----g~~~~~~~~~ 253 (285)
T 3kea_A 231 LDDAEIAKMIIEK----HVEYKSDSYT 253 (285)
T ss_dssp TTCHHHHHHHHHH----HHHHTTCTTT
T ss_pred cCCHHHHHHHHHc----CCCCCCcccc
Confidence 9999999999998 7777655443
No 38
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=4.7e-35 Score=291.66 Aligned_cols=276 Identities=13% Similarity=0.023 Sum_probs=182.0
Q ss_pred CCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccch-
Q 008102 34 NKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVEST- 112 (577)
Q Consensus 34 ~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~- 112 (577)
...+|+|. .. .+++++|++ .|..++..+..|.|+++ |+.++|+.|++.|.++...........
T Consensus 22 ~~~~~~~~----~~---~dlv~~ll~----~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~ 85 (327)
T 1sw6_A 22 RTAGPIIT----FT---HDLTSDFLS----SPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNND 85 (327)
T ss_dssp ---CCEEE----CC---TTCCCSTTT----SSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------
T ss_pred ccccchhh----hc---CchHHHHhh----CCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcc
Confidence 44566663 44 567777766 78889999999999987 999999999999987432100000000
Q ss_pred HHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCC
Q 008102 113 ARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGK 192 (577)
Q Consensus 113 ~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~ 192 (577)
...--........+.+|.|+..+..++++.|++.+.+++...|..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~ 165 (327)
T 1sw6_A 86 SSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE 165 (327)
T ss_dssp ------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCC
T ss_pred cccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 00000001112234468888888899999999999988755899999999999999999999999999999999999999
Q ss_pred CHHHHHHHcCCC---HHHHHHHHhhCCCccccCCCCCCcHHHHHHh----cCcHHHHHHHhcCCC---------------
Q 008102 193 TALHAAAVNINS---IDVVKLLLDKKKSLIGETDRYGWTPLHYASY----FDRNIIAELLLNSDK--------------- 250 (577)
Q Consensus 193 t~L~~A~~~~~~---~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~----~g~~~~v~~Ll~~~~--------------- 250 (577)
||||+|+.. ++ .++++.|++.+...++..|..|+||||+|+. .|+.+++++|++.+.
T Consensus 166 TpLh~A~~~-g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~ 244 (327)
T 1sw6_A 166 SCLVKAVKS-VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 244 (327)
T ss_dssp CHHHHHHHS-SHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-
T ss_pred CHHHHHHHh-cccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhh
Confidence 999999998 77 6778888887754578899999999999999 899999999998743
Q ss_pred -----CccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccc
Q 008102 251 -----SLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLI 325 (577)
Q Consensus 251 -----~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~ 325 (577)
+++ ..+..|.||||.|+. +++|++++ ++.+|..|+||||+|+.+|+.+++++|+++ |+++
T Consensus 245 ~~~g~~~~--~~~~~g~t~L~~a~~------~~~Ll~~~---~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~----Gad~ 309 (327)
T 1sw6_A 245 NEKESKPN--DKNGERKDSILENLD------LKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLDY----GADP 309 (327)
T ss_dssp -----------------CHHHHHCS------HHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHT----TCCT
T ss_pred hcccCCcc--cccccCCChhHHHHH------HHHHHHhC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCC
Confidence 222 122345555555553 45555542 344455555555555555555555555554 5555
Q ss_pred cCCCCCCCcHHHHHHH
Q 008102 326 NDKDKEGNTPLHLLAA 341 (577)
Q Consensus 326 n~~d~~G~TpLh~A~~ 341 (577)
|.+|.+|+||||+|++
T Consensus 310 ~~~d~~G~TpL~~A~~ 325 (327)
T 1sw6_A 310 FIANKSGLRPVDFGAG 325 (327)
T ss_dssp TCCCTTSCCGGGGTCC
T ss_pred cccCCCCCCHHHHHHh
Confidence 5555555555555543
No 39
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=6.9e-33 Score=260.47 Aligned_cols=197 Identities=23% Similarity=0.292 Sum_probs=128.1
Q ss_pred cccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCC
Q 008102 70 SVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPA 149 (577)
Q Consensus 70 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~ 149 (577)
..+..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.++.
T Consensus 20 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 83 (223)
T 2f8y_A 20 QTDRTGETALHLAARYSRSDAAKRLLEASAD----------------ANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 83 (223)
T ss_dssp CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTS
T ss_pred ccCCCCCchHHHHHHcCCHHHHHHHHHcCCC----------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 3466677777777777777777777765544 344566677777777777777777777776664
Q ss_pred CCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcH
Q 008102 150 VPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTP 229 (577)
Q Consensus 150 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tp 229 (577)
.....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+++++|++.+.+ ++..|..|.||
T Consensus 84 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~ 161 (223)
T 2f8y_A 84 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV-NNVDAAVVLLKNGAN-KDMQNNREETP 161 (223)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTCCCH
T ss_pred CcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHc-CCHHHHHHHHHcCCC-CCCcCCCCcCH
Confidence 4445666667777777777777777777777766666666677777777666 667777777666655 45666666666
Q ss_pred HHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCc
Q 008102 230 LHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPE 286 (577)
Q Consensus 230 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 286 (577)
||+|+..|+.+++++|++++++++ ..+..|.||+|+|+..|+.+++++|++++..
T Consensus 162 L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 162 LFLAAREGSYETAKVLLDHFANRD--ITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216 (223)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCc--cccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence 666666666666666666666553 2233556666666666666666666665544
No 40
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.6e-34 Score=287.93 Aligned_cols=260 Identities=14% Similarity=0.085 Sum_probs=201.7
Q ss_pred cCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCC
Q 008102 72 NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVP 151 (577)
Q Consensus 72 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~ 151 (577)
+..+.+|+| ..+.++|++|++.|++ ++..+..|.|+++ |+.++++.|+++|.+..
T Consensus 20 ~~~~~~~~~----~~~~dlv~~ll~~ga~----------------i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~ 74 (327)
T 1sw6_A 20 NDRTAGPII----TFTHDLTSDFLSSPLK----------------IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPE 74 (327)
T ss_dssp -----CCEE----ECCTTCCCSTTTSSCC----------------CEECBCCCCCCCH-----HHHHHHHHHHHHHHC--
T ss_pred ccccccchh----hhcCchHHHHhhCCcc----------------cccCCCCCCcccC-----chhHHHHHHHHhccCCc
Confidence 345567776 3566789999998776 5668889999988 99999999999875532
Q ss_pred cC----------------CCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCC-CCCCCCCHHHHHHHcCCCHHHHHHHHhh
Q 008102 152 YS----------------TNGCGETPLYMAAERGFEKMLTEILENCPSVAH-EGPSGKTALHAAAVNINSIDVVKLLLDK 214 (577)
Q Consensus 152 ~~----------------~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~~Ll~~ 214 (577)
.. ......+.+|.|+..+..++++.|++.|++++. .+..|.||||+|+.. |+.+++++|++.
T Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~-g~~~~v~~Ll~~ 153 (327)
T 1sw6_A 75 IQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI-ANLELVKHLVKH 153 (327)
T ss_dssp -----------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHT-TCHHHHHHHHHT
T ss_pred cccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHc
Confidence 10 111122345888888889999999999999999 899999999999999 999999999999
Q ss_pred CCCccccCCCCCCcHHHHHHhcCc---HHHHHHHhcCC-CCccchhcCCCCCcchhHhhh----cCcHHHHHHHHhh---
Q 008102 215 KKSLIGETDRYGWTPLHYASYFDR---NIIAELLLNSD-KSLAYIVDNDRKMTALHLAAG----QGKLRVVEEIISY--- 283 (577)
Q Consensus 215 ~~~~~~~~d~~g~tpL~~A~~~g~---~~~v~~Ll~~~-~~~~~~~~~~~g~tpL~~A~~----~g~~~iv~~Ll~~--- 283 (577)
+.+ ++.+|..|+||||+|+..|+ .++++.|++.+ .+++ ..+..|.||||+|+. .|+.+++++|++.
T Consensus 154 Gad-~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~--~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~ 230 (327)
T 1sw6_A 154 GSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI--LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMG 230 (327)
T ss_dssp TCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGG--EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred CCC-CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcccc--CCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHH
Confidence 988 78999999999999999998 56777777765 3332 344589999999999 9999999999987
Q ss_pred -----------------CCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCcc
Q 008102 284 -----------------CPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDS 346 (577)
Q Consensus 284 -----------------~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~ 346 (577)
+.+ ++.+|..|+||||.|+. +++|+++ ++|.+|.+|+||||+|+..+ ..
T Consensus 231 ~~~~~~~~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~Ll~~------~~n~~d~~G~TpLh~A~~~g-~~ 296 (327)
T 1sw6_A 231 WIVKKQNRPIQSGTNEKESK-PNDKNGERKDSILENLD------LKWIIAN------MLNAQDSNGDTCLNIAARLG-NI 296 (327)
T ss_dssp HHHHGGGCCEEEC-----------------CHHHHHCS------HHHHHHH------TTTCCCTTSCCHHHHHHHHC-CH
T ss_pred HHhcccchHHHhhhhcccCC-cccccccCCChhHHHHH------HHHHHHh------CCCCCCCCCCCHHHHHHHcC-CH
Confidence 455 67889999999999986 8888875 58999999999999999999 56
Q ss_pred ceeccccCcccchhhhhhCCCChHHHHh
Q 008102 347 FHRIVPWNVGGDYQAVNKQNISVKHITR 374 (577)
Q Consensus 347 ~~~~lL~~~g~d~~~~n~~G~t~l~~a~ 374 (577)
.+.++|+++|+|++.+|..|+||+++|+
T Consensus 297 ~~v~~Ll~~Gad~~~~d~~G~TpL~~A~ 324 (327)
T 1sw6_A 297 SIVDALLDYGADPFIANKSGLRPVDFGA 324 (327)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred HHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 7778888999999999999999999997
No 41
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.98 E-value=8.2e-33 Score=262.41 Aligned_cols=214 Identities=19% Similarity=0.153 Sum_probs=148.0
Q ss_pred cCCCCCCcHhHHHHHcCCHHHHHHHHhcCCC---CCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHH
Q 008102 119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPA---VPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTAL 195 (577)
Q Consensus 119 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L 195 (577)
.+|.+|.||||+|+..|+.+++++|++.+.. .....+..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 4688999999999999999999999988653 2346788899999999999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHhhCCC-----ccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhh
Q 008102 196 HAAAVNINSIDVVKLLLDKKKS-----LIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAG 270 (577)
Q Consensus 196 ~~A~~~~~~~~~~~~Ll~~~~~-----~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~ 270 (577)
|+|+.. ++.+++++|++.+.. ..+..+..|.||||+|+..|+.+++++|++.+++++.. +...|.||||+|+.
T Consensus 83 ~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~g~tpL~~A~~ 160 (236)
T 1ikn_D 83 HLACEQ-GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ-EPCNGRTALHLAVD 160 (236)
T ss_dssp HHHHHH-TCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTTCCCHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCCHHHHHHH
Confidence 999999 999999999988753 23455566666666666666666666666666555321 11145666666666
Q ss_pred cCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhcccccccccc--CCCCCCCcHHHHH
Q 008102 271 QGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLIN--DKDKEGNTPLHLL 339 (577)
Q Consensus 271 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n--~~d~~G~TpLh~A 339 (577)
.|+.+++++|++++++ ++.+|..|+||||+|+.+++.+++++|+++ |++.. .++.+|.||.+.+
T Consensus 161 ~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~----ga~~~~~~~~~~~~~~~~~~ 226 (236)
T 1ikn_D 161 LQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQL----TLENLQMLPESEDEESYDTE 226 (236)
T ss_dssp TTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTT----SCGGGSSCCCCCTTTCCCCC
T ss_pred cCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHccCchHHHHHHHHc----chhhhhcCCccchHHHHhhh
Confidence 6666666666666555 455566666666666666666666666655 44333 4555555555443
No 42
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.98 E-value=3.3e-33 Score=265.13 Aligned_cols=219 Identities=20% Similarity=0.268 Sum_probs=155.2
Q ss_pred cccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCC
Q 008102 70 SVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPA 149 (577)
Q Consensus 70 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~ 149 (577)
.+|.+|.||||+|+..|+.+++++|++.+.... ..++..|..|.||||+|+..|+.+++++|+++|.+
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 70 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL------------AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 70 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----C------------CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccH------------HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 456777888888888888888888877765321 12456777788888888888888888888877776
Q ss_pred CCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCC------CCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCC
Q 008102 150 VPYSTNGCGETPLYMAAERGFEKMLTEILENCPS------VAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETD 223 (577)
Q Consensus 150 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~------~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d 223 (577)
++ ..+..|.||||+|+..|+.+++++|++.+++ .+..+..|.||||+|+.. ++.+++++|++.+.+ ++..+
T Consensus 71 ~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~-~~~~~ 147 (236)
T 1ikn_D 71 PE-LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH-GYLGIVELLVSLGAD-VNAQE 147 (236)
T ss_dssp SC-CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHT-TCHHHHHHHHHHTCC-TTCCC
T ss_pred CC-CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC-CCCCC
Confidence 64 5667778888888888888888888887755 345666788888888887 788888888887777 56666
Q ss_pred C-CCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCccc-ccccCCCCchhhH
Q 008102 224 R-YGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECC-ELVDGRGWNVLHF 301 (577)
Q Consensus 224 ~-~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~-~~~d~~g~t~Lh~ 301 (577)
. .|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++++++.. ...+..|.|+.+.
T Consensus 148 ~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~ 225 (236)
T 1ikn_D 148 PCNGRTALHLAVDLQNPDLVSLLLKCGADVN--RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDT 225 (236)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC--CCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--cccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhh
Confidence 5 78888888888888888888888877765 334467888888888888888888888887633 3567777777776
Q ss_pred HHhc
Q 008102 302 AMVS 305 (577)
Q Consensus 302 A~~~ 305 (577)
+...
T Consensus 226 ~~~~ 229 (236)
T 1ikn_D 226 ESEF 229 (236)
T ss_dssp C---
T ss_pred hccc
Confidence 5543
No 43
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=2.4e-31 Score=251.62 Aligned_cols=204 Identities=21% Similarity=0.245 Sum_probs=143.9
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHH-HHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCC-
Q 008102 74 KGDAPLHVAAKCGHASVVTALIEI-AKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVP- 151 (577)
Q Consensus 74 ~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~- 151 (577)
.|+||||.|++.|+.+++++|++. +.+ ++.+|..|.||||+|+..|+.+++++|++.+++..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~ 65 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCE----------------VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCC----------------cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcc
Confidence 478999999999999999999986 433 46678889999999999999999999999887653
Q ss_pred ---cCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCc
Q 008102 152 ---YSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWT 228 (577)
Q Consensus 152 ---~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t 228 (577)
...|..|.||||+|+..|+.+++++|+++|++++..+... .++ ...+..|..|.|
T Consensus 66 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~--~~~--------------------~~~~~~~~~g~t 123 (232)
T 2rfa_A 66 EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGS--VFH--------------------YRPHNLIYYGEH 123 (232)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSG--GGS--------------------CCTTCSCCCCSS
T ss_pred ccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCc--cee--------------------ecccccccCCCC
Confidence 3456688999999999999999999999998887765421 000 002334455666
Q ss_pred HHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHH----HHHHhhCCccc-----ccccCCCCchh
Q 008102 229 PLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVV----EEIISYCPECC-----ELVDGRGWNVL 299 (577)
Q Consensus 229 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv----~~Ll~~~~~~~-----~~~d~~g~t~L 299 (577)
|||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++ ++|++.+++.. +.+|..|+|||
T Consensus 124 ~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl 201 (232)
T 2rfa_A 124 PLSFAACVGSEEIVRLLIEHGADIR--AQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPF 201 (232)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHH
Confidence 6666666666666666666665553 2233566666666666666655 66666665522 46677777777
Q ss_pred hHHHhcCChhHHHHHHhc
Q 008102 300 HFAMVSFDASDLKHLLNN 317 (577)
Q Consensus 300 h~A~~~~~~~~v~~Ll~~ 317 (577)
|+|+.+|+.+++++|+++
T Consensus 202 ~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 202 KLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhc
Confidence 777777777777777776
No 44
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=1e-30 Score=247.30 Aligned_cols=212 Identities=21% Similarity=0.186 Sum_probs=156.5
Q ss_pred CCCcHhHHHHHcCCHHHHHHHHhc-CCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCC-----CCCCCCCCCHHH
Q 008102 123 EKNTALHEAMQHRSLDVVKILIKE-DPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSV-----AHEGPSGKTALH 196 (577)
Q Consensus 123 ~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~-----~~~~~~g~t~L~ 196 (577)
.|+||||+|++.|+.+++++|++. +.++ ...|..|.||||+|+..|+.+++++|+++++++ +..+..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 467777777777777777777776 4444 356777777777777777777777777777665 445556777777
Q ss_pred HHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHH
Q 008102 197 AAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRV 276 (577)
Q Consensus 197 ~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~i 276 (577)
+|+.. ++.+++++|++.+.+ .+..+... .+.. .. ...+..|.||||+|+..|+.++
T Consensus 81 ~A~~~-~~~~~v~~Ll~~g~~-~~~~~~~~--~~~~------------------~~--~~~~~~g~t~L~~A~~~~~~~~ 136 (232)
T 2rfa_A 81 IAVIN-QNVNLVRALLARGAS-VSARATGS--VFHY------------------RP--HNLIYYGEHPLSFAACVGSEEI 136 (232)
T ss_dssp HHHHT-TCHHHHHHHHHTTCC-TTCCCCSG--GGSC------------------CT--TCSCCCCSSHHHHHHHHTCHHH
T ss_pred HHHHc-CCHHHHHHHHhCCCC-CCcccCCc--ceee------------------cc--cccccCCCCHHHHHHHcCCHHH
Confidence 77777 777777777776655 33333221 1100 00 0122379999999999999999
Q ss_pred HHHHHhhCCcccccccCCCCchhhHHHhcCChhHH----HHHHhccccccccc------cCCCCCCCcHHHHHHHhCCcc
Q 008102 277 VEEIISYCPECCELVDGRGWNVLHFAMVSFDASDL----KHLLNNYPIVRNLI------NDKDKEGNTPLHLLAALCRDS 346 (577)
Q Consensus 277 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v----~~Ll~~~~~~~~~~------n~~d~~G~TpLh~A~~~~~~~ 346 (577)
+++|++++++ ++.+|..|+||||+|+..++.+++ ++|++. +++. +.+|.+|+||||+|+..+ ..
T Consensus 137 v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~----g~~~~~~~~~~~~~~~g~tpl~~A~~~g-~~ 210 (232)
T 2rfa_A 137 VRLLIEHGAD-IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSY----DGGDHLKSLELVPNNQGLTPFKLAGVEG-NI 210 (232)
T ss_dssp HHHHHHTTCC-TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHT----TCSCSSCCGGGCCCTTSCCHHHHHHHHT-CH
T ss_pred HHHHHHCCCC-CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhc----CCchhhhhhhccCCCCCCCHHHHHHHcC-CH
Confidence 9999999998 788999999999999999999988 889988 6666 689999999999999999 67
Q ss_pred ceeccccCcccchhhhhhC
Q 008102 347 FHRIVPWNVGGDYQAVNKQ 365 (577)
Q Consensus 347 ~~~~lL~~~g~d~~~~n~~ 365 (577)
.+.++|+++|.+.......
T Consensus 211 ~~v~~Ll~~g~~~~~~~~~ 229 (232)
T 2rfa_A 211 VMFQHLMQKRKHIAAAHHH 229 (232)
T ss_dssp HHHHHHHHHHHHC------
T ss_pred HHHHHHHhcCccchhhhcc
Confidence 7788888998877665443
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=3.3e-30 Score=237.94 Aligned_cols=192 Identities=18% Similarity=0.205 Sum_probs=156.4
Q ss_pred CCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHc
Q 008102 122 DEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVN 201 (577)
Q Consensus 122 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~ 201 (577)
..+.||||.|+..|+.+.++.|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 46789999999999999999999988744557788899999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCC-CCccchhcCCCCCcchhHhhhcCc-----HH
Q 008102 202 INSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSD-KSLAYIVDNDRKMTALHLAAGQGK-----LR 275 (577)
Q Consensus 202 ~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~g~tpL~~A~~~g~-----~~ 275 (577)
++.+++++|++.+....+..|..|.||||+|+..|+.+++++|++.+ .+++ ..+..|.||||+|+..++ .+
T Consensus 83 -~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~L~~A~~~~~~~~~~~~ 159 (201)
T 3hra_A 83 -GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID--FQNDFGYTALIEAVGLREGNQLYQD 159 (201)
T ss_dssp -TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT--CCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred -CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC--CCCCCCCCHHHHHHHhccchhhHHH
Confidence 99999999997666557788888888888888888888888888877 4443 223367777777777776 77
Q ss_pred HHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhc
Q 008102 276 VVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNN 317 (577)
Q Consensus 276 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 317 (577)
++++|++++++ ++.+|..|+||||+|+.+++.+++++|+++
T Consensus 160 ~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 160 IVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred HHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 77777777777 566777777777777777777777777765
No 46
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=1.5e-30 Score=240.29 Aligned_cols=191 Identities=21% Similarity=0.261 Sum_probs=90.6
Q ss_pred CCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchH
Q 008102 34 NKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTA 113 (577)
Q Consensus 34 ~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~ 113 (577)
.+.||||.|+..|+ .+.++.+++ ..+..++..+..|.||||+|+..|+.+++++|++.|++
T Consensus 4 ~~~~~L~~A~~~g~---~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------- 64 (201)
T 3hra_A 4 YEVGALLEAANQRD---TKKVKEILQ---DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD------------- 64 (201)
T ss_dssp CCTTHHHHHHHTTC---HHHHHHHHT---CTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------------
T ss_pred ccccHHHHHHHhcc---HHHHHHHHH---cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------------
Confidence 34445555555555 444444422 23334444444555555555555555555555544333
Q ss_pred HHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhC-CCCCCCCCCCC
Q 008102 114 RQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENC-PSVAHEGPSGK 192 (577)
Q Consensus 114 ~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~ 192 (577)
++.+|..|.||||+|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|+++| .+++.++..|.
T Consensus 65 ---~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~ 141 (201)
T 3hra_A 65 ---INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGY 141 (201)
T ss_dssp ---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSC
T ss_pred ---CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCC
Confidence 23344445555555555555555555553333222344444555555555555555555555554 44444444555
Q ss_pred CHHHHHHHcCCC-----HHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcC
Q 008102 193 TALHAAAVNINS-----IDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNS 248 (577)
Q Consensus 193 t~L~~A~~~~~~-----~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 248 (577)
||||.|+.. ++ .+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|+++
T Consensus 142 t~L~~A~~~-~~~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 142 TALIEAVGL-REGNQLYQDIVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp CHHHHHHHS-SCCSHHHHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred CHHHHHHHh-ccchhhHHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 555555544 33 4445555544444 344444444444444444444444444443
No 47
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=2.6e-31 Score=255.35 Aligned_cols=209 Identities=23% Similarity=0.209 Sum_probs=173.2
Q ss_pred CCCccceeeeecCCccchHHHHHHHHHHhhCcccccc----ccCCCCcHHHHHHHh---CCHHHHHHHHHHHHcCCchhh
Q 008102 34 NKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQS----VNAKGDAPLHVAAKC---GHASVVTALIEIAKKQPKELE 106 (577)
Q Consensus 34 ~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~----~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~ 106 (577)
.|+||||.|+..|+ .+.++.+++.+...+..++. .+..|.||||+|+.. |+.+++++|++.+++......
T Consensus 1 ~G~t~L~~A~~~g~---~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~ 77 (256)
T 2etb_A 1 FDRDRLFSVVSRGV---PEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP 77 (256)
T ss_dssp CCHHHHHHHHHHTC---GGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC
T ss_pred CCccHHHHHHHcCC---HHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh
Confidence 47899999999999 98777776655556777777 899999999999999 999999999999987532000
Q ss_pred ccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCC-------------CChHHHHHHHhCCHHH
Q 008102 107 SGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGC-------------GETPLYMAAERGFEKM 173 (577)
Q Consensus 107 ~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-------------g~tpL~~A~~~g~~~~ 173 (577)
........+|..|.||||+|+..|+.+++++|+++|++++ ..+.. |.||||+|+..|+.++
T Consensus 78 -----~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~ 151 (256)
T 2etb_A 78 -----LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 151 (256)
T ss_dssp -----GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHH
T ss_pred -----hcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence 0000112355789999999999999999999999998876 44443 9999999999999999
Q ss_pred HHHHHH---hCCCCCCCCCCCCCHHHHHHH--cCCCHH-------HHHHHHhhCCCcc------ccCCCCCCcHHHHHHh
Q 008102 174 LTEILE---NCPSVAHEGPSGKTALHAAAV--NINSID-------VVKLLLDKKKSLI------GETDRYGWTPLHYASY 235 (577)
Q Consensus 174 v~~Ll~---~~~~~~~~~~~g~t~L~~A~~--~~~~~~-------~~~~Ll~~~~~~~------~~~d~~g~tpL~~A~~ 235 (577)
+++|++ +|++++.+|..|+||||+|+. . ++.+ ++++|++.+.+.. +.+|..|.||||+|+.
T Consensus 152 v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~-~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~ 230 (256)
T 2etb_A 152 VTYLLENPHQPASLEATDSLGNTVLHALVMIAD-NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAK 230 (256)
T ss_dssp HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHH
T ss_pred HHHHHhccccCCCcCccCCCCCCHHHHHHHccc-CCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHH
Confidence 999999 899999999999999999998 6 7888 9999999887731 7788888888888888
Q ss_pred cCcHHHHHHHhcCCCCc
Q 008102 236 FDRNIIAELLLNSDKSL 252 (577)
Q Consensus 236 ~g~~~~v~~Ll~~~~~~ 252 (577)
.|+.+++++|++++.+.
T Consensus 231 ~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 231 EGKIEIFRHILQREFSG 247 (256)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHhCCCCC
Confidence 88888888888877654
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=8.2e-31 Score=254.42 Aligned_cols=207 Identities=21% Similarity=0.253 Sum_probs=169.8
Q ss_pred ccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccc----cccCCCCcHHHHHHHh---CCHHHHHHHHHHHHcCCc
Q 008102 31 THNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQ----SVNAKGDAPLHVAAKC---GHASVVTALIEIAKKQPK 103 (577)
Q Consensus 31 ~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~----~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~ 103 (577)
.+..|.||||.|+..|+ .++++.|++.....+..++ ..+..|.||||+|+.. |+.++|++|++.+++...
T Consensus 9 ~d~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~ 85 (273)
T 2pnn_A 9 PRLYDRRSIFDAVAQSN---CQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS 85 (273)
T ss_dssp --CCCHHHHHHHHHTTC---SSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred CCcccchHHHHHHHcCC---HHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence 44589999999999999 9999999886555555554 4588999999999987 999999999999986432
Q ss_pred hhhccccchHHHhhcc----CCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCC-------------CCCChHHHHHH
Q 008102 104 ELESGVESTARQMLGM----TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTN-------------GCGETPLYMAA 166 (577)
Q Consensus 104 ~~~~~~~~~~~~~l~~----~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-------------~~g~tpL~~A~ 166 (577)
...+++. .|..|.||||+|+..|+.+++++|+++|++++...+ ..|.||||+|+
T Consensus 86 ---------~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~ 156 (273)
T 2pnn_A 86 ---------LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAA 156 (273)
T ss_dssp ---------HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHH
T ss_pred ---------hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHH
Confidence 1222332 677899999999999999999999999988864333 26999999999
Q ss_pred HhCCHHHHHHHHH---hCCCCCCCCCCCCCHHHHHHHcCCC---------HHHHHHHHhhCCCcc------ccCCCCCCc
Q 008102 167 ERGFEKMLTEILE---NCPSVAHEGPSGKTALHAAAVNINS---------IDVVKLLLDKKKSLI------GETDRYGWT 228 (577)
Q Consensus 167 ~~g~~~~v~~Ll~---~~~~~~~~~~~g~t~L~~A~~~~~~---------~~~~~~Ll~~~~~~~------~~~d~~g~t 228 (577)
..|+.+++++|++ .|++++.+|..|+||||+|+.. ++ .+++++|++.+.+.. +.+|..|.|
T Consensus 157 ~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~-~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~T 235 (273)
T 2pnn_A 157 CTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEV-ADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLT 235 (273)
T ss_dssp HTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCC
T ss_pred HcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHc-cCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCC
Confidence 9999999999999 8899999999999999999988 66 788888888877632 247778888
Q ss_pred HHHHHHhcCcHHHHHHHhcCCC
Q 008102 229 PLHYASYFDRNIIAELLLNSDK 250 (577)
Q Consensus 229 pL~~A~~~g~~~~v~~Ll~~~~ 250 (577)
|||+|+..|+.+++++|+++|+
T Consensus 236 pL~~A~~~g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 236 PLALAASSGKIGVLAYILQREI 257 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhChHHHHHHHHHCCC
Confidence 8888888888888888888777
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=4.2e-31 Score=256.46 Aligned_cols=235 Identities=17% Similarity=0.148 Sum_probs=140.5
Q ss_pred ccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHc---CCHHHHHHH
Q 008102 67 LLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH---RSLDVVKIL 143 (577)
Q Consensus 67 ~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~---g~~~~v~~L 143 (577)
..+..+..|.||||.|++.|+.++|+.|++.+.+...++.. .....|..|.||||+|+.. |+.+++++|
T Consensus 5 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--------~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~L 76 (273)
T 2pnn_A 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTD--------SEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76 (273)
T ss_dssp ------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTS--------GGGSCTTTCCCHHHHHHHSCBTTBCHHHHHH
T ss_pred cCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCC--------cccccCcCCCCHHHHHHHHHhcCChHHHHHH
Confidence 34568899999999999999999999999987654322110 0114588999999999987 999999999
Q ss_pred HhcCCCCC----------cCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHh
Q 008102 144 IKEDPAVP----------YSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLD 213 (577)
Q Consensus 144 l~~~~~~~----------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~ 213 (577)
++.+++.. ...|..|.||||+|+..|+.+++++|+++|++++..+..+. ..
T Consensus 77 l~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~-------~~------------ 137 (273)
T 2pnn_A 77 LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF-------FK------------ 137 (273)
T ss_dssp HHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGG-------GS------------
T ss_pred HHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccc-------cc------------
Confidence 99875421 12566899999999999999999999999999888776210 00
Q ss_pred hCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhc---CCCCccchhcCCCCCcchhHhhhcCc---------HHHHHHHH
Q 008102 214 KKKSLIGETDRYGWTPLHYASYFDRNIIAELLLN---SDKSLAYIVDNDRKMTALHLAAGQGK---------LRVVEEII 281 (577)
Q Consensus 214 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~---~~~~~~~~~~~~~g~tpL~~A~~~g~---------~~iv~~Ll 281 (577)
.......+..|.||||+|+..|+.+++++|++ .+.+++ ..+..|.||||+|+..|+ .+++++|+
T Consensus 138 --~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~--~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll 213 (273)
T 2pnn_A 138 --KTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS--ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEIL 213 (273)
T ss_dssp --SCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTT--CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred --cccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCce--eeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHH
Confidence 00012223344444444444444444444444 444432 122244455555554444 45555555
Q ss_pred hhCCccc------ccccCCCCchhhHHHhcCChhHHHHHHhccccccc-cccCCCCCCCcHH
Q 008102 282 SYCPECC------ELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRN-LINDKDKEGNTPL 336 (577)
Q Consensus 282 ~~~~~~~------~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~-~~n~~d~~G~TpL 336 (577)
+++++.. +.+|..|+||||+|+..|+.+++++|+++ |+ ++...+..+.+|-
T Consensus 214 ~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~----ga~dp~~~~~~~~~~~ 271 (273)
T 2pnn_A 214 ILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR----EIHEPECRHAAAHHHH 271 (273)
T ss_dssp HHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH----HTC-------------
T ss_pred HhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHC----CCCCchhhhhhhhhcc
Confidence 5555421 24566666666666666666666666666 55 5555555555543
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=2e-30 Score=249.13 Aligned_cols=193 Identities=21% Similarity=0.214 Sum_probs=133.5
Q ss_pred CCCcHHHHHHHhCCHHHH----HHHHHHHHcCCchhhccccchHHHhhcc----CCCCCCcHhHHHHHc---CCHHHHHH
Q 008102 74 KGDAPLHVAAKCGHASVV----TALIEIAKKQPKELESGVESTARQMLGM----TNDEKNTALHEAMQH---RSLDVVKI 142 (577)
Q Consensus 74 ~g~t~Lh~A~~~g~~~iv----~~Ll~~~~~~~~~~~~~~~~~~~~~l~~----~~~~g~t~Lh~A~~~---g~~~~v~~ 142 (577)
.|+||||.|+..|+.+.| ++|++.+.+ ++. +|..|.||||+|+.. |+.+++++
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~----------------i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~ 64 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY----------------LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC----------------TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHH
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC----------------cccccccCCCCCCCHHHHHHHccccchHHHHHH
Confidence 378999999999999854 555555544 344 789999999999999 99999999
Q ss_pred HHhcCCCCCcC----------CCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCC-------------CCCHHHHHH
Q 008102 143 LIKEDPAVPYS----------TNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPS-------------GKTALHAAA 199 (577)
Q Consensus 143 Ll~~~~~~~~~----------~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-------------g~t~L~~A~ 199 (577)
|++.+++.... .|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+
T Consensus 65 Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~ 144 (256)
T 2etb_A 65 LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAA 144 (256)
T ss_dssp HHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHH
T ss_pred HHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHH
Confidence 99987665422 3467999999999999999999999999999888775 555555555
Q ss_pred HcCCCHHHHHHHHh---hCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHH-
Q 008102 200 VNINSIDVVKLLLD---KKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLR- 275 (577)
Q Consensus 200 ~~~~~~~~~~~Ll~---~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~- 275 (577)
.. ++.+++++|++ .+.+ ++..|..|+||||+|+..+ .++.+
T Consensus 145 ~~-~~~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~---------------------------------~~~~~~ 189 (256)
T 2etb_A 145 CT-KQWDVVTYLLENPHQPAS-LEATDSLGNTVLHALVMIA---------------------------------DNSPEN 189 (256)
T ss_dssp HT-TCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHC---------------------------------CSCHHH
T ss_pred Hc-CCHHHHHHHHhccccCCC-cCccCCCCCCHHHHHHHcc---------------------------------cCCchh
Confidence 55 55555555555 3333 3444455555555554400 44444
Q ss_pred ------HHHHHHhhCCccc------ccccCCCCchhhHHHhcCChhHHHHHHhc
Q 008102 276 ------VVEEIISYCPECC------ELVDGRGWNVLHFAMVSFDASDLKHLLNN 317 (577)
Q Consensus 276 ------iv~~Ll~~~~~~~------~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 317 (577)
++++|++++++.. +.+|..|+||||+|+..|+.+++++|+++
T Consensus 190 ~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 243 (256)
T 2etb_A 190 SALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence 5555555555521 55666666666666666666666666665
No 51
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=3e-29 Score=223.52 Aligned_cols=158 Identities=31% Similarity=0.431 Sum_probs=126.3
Q ss_pred cHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCC
Q 008102 77 APLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNG 156 (577)
Q Consensus 77 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 156 (577)
++|+.||+.|+.++|+.|++.|++ ++.+|.+|.||||+|+..++.++++.|++.+.+++ .+|.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gad----------------vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~ 68 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGAD----------------VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDS 68 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC----------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhcc
Confidence 468888888888888888887766 45678888888888888888888888888887765 6777
Q ss_pred CCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhc
Q 008102 157 CGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYF 236 (577)
Q Consensus 157 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~ 236 (577)
.|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.. |+.+++++|++.+.+ ++.+|.+|+||||+|+..
T Consensus 69 ~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~-g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~ 146 (169)
T 4gpm_A 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN-GHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREH 146 (169)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHc
Confidence 788888888888888888888888888888888888888888888 888888888888777 677888888888888888
Q ss_pred CcHHHHHHHhcCCCCcc
Q 008102 237 DRNIIAELLLNSDKSLA 253 (577)
Q Consensus 237 g~~~~v~~Ll~~~~~~~ 253 (577)
|+.+++++|+++|+++.
T Consensus 147 g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 147 GNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp TCHHHHHHHHTC-----
T ss_pred CCHHHHHHHHHCCCCcC
Confidence 88888888888887764
No 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=8.1e-30 Score=245.52 Aligned_cols=209 Identities=22% Similarity=0.214 Sum_probs=172.1
Q ss_pred CCCccceeeeecCCccchHHHHHHHHHHhhCcccccccc----CCCCcHHHHHH---HhCCHHHHHHHHHHHHcCCchhh
Q 008102 34 NKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVN----AKGDAPLHVAA---KCGHASVVTALIEIAKKQPKELE 106 (577)
Q Consensus 34 ~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~----~~g~t~Lh~A~---~~g~~~iv~~Ll~~~~~~~~~~~ 106 (577)
.++++||.|+..|+ .+.++.|++.+...+..++..+ ..|.||||+|+ +.|+.+++++|++.+++......
T Consensus 4 ~~~~~L~~A~~~g~---~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~ 80 (260)
T 3jxi_A 4 FNRPILFDIVSRGS---PDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE 80 (260)
T ss_dssp CCHHHHHHHHHHTC---GGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHhCC---HHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence 67899999999999 9988888776555666666554 77999999999 67999999999999987432100
Q ss_pred ccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCC--------------CCCChHHHHHHHhCCHH
Q 008102 107 SGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTN--------------GCGETPLYMAAERGFEK 172 (577)
Q Consensus 107 ~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~--------------~~g~tpL~~A~~~g~~~ 172 (577)
.....++..|..|.||||+|+..|+.+++++|+++|++++ ..+ ..|.||||+|+..|+.+
T Consensus 81 -----~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~ 154 (260)
T 3jxi_A 81 -----FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH 154 (260)
T ss_dssp -----HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHH
T ss_pred -----hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccccccccCcccccccccCCCCHHHHHHHcCCHH
Confidence 0011234456689999999999999999999999998886 444 57999999999999999
Q ss_pred HHHHHHH---hCCCCCCCCCCCCCHHHHHHHcCCC---------HHHHHHHHhhCCCcc------ccCCCCCCcHHHHHH
Q 008102 173 MLTEILE---NCPSVAHEGPSGKTALHAAAVNINS---------IDVVKLLLDKKKSLI------GETDRYGWTPLHYAS 234 (577)
Q Consensus 173 ~v~~Ll~---~~~~~~~~~~~g~t~L~~A~~~~~~---------~~~~~~Ll~~~~~~~------~~~d~~g~tpL~~A~ 234 (577)
++++|++ .|++++.+|..|.||||+|+.. ++ .+++++|++.+.+.. +..|..|.||||+|+
T Consensus 155 ~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~-~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~ 233 (260)
T 3jxi_A 155 IVHYLTENGHKQADLRRQDSRGNTVLHALVAI-ADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAA 233 (260)
T ss_dssp HHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH-CCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred HHHHHHhccccCCCCcccCCCCCcHHHHHHHh-ccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHH
Confidence 9999999 8999999999999999999987 65 689999999887631 568888888888888
Q ss_pred hcCcHHHHHHHhcCCCCc
Q 008102 235 YFDRNIIAELLLNSDKSL 252 (577)
Q Consensus 235 ~~g~~~~v~~Ll~~~~~~ 252 (577)
..|+.+++++|++++.+.
T Consensus 234 ~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 234 KTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhCCCc
Confidence 888888888888887655
No 53
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=1.8e-28 Score=218.44 Aligned_cols=156 Identities=30% Similarity=0.391 Sum_probs=94.2
Q ss_pred cHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCH
Q 008102 126 TALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSI 205 (577)
Q Consensus 126 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~ 205 (577)
++|+.|++.|+.++|+.|+++|++++ .+|..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+.. ++.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn-~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~-g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVN-ASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN-GHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHc-CCH
Confidence 45666666666666666666666654 5566666666666666666666666666666666666666666666666 666
Q ss_pred HHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCC
Q 008102 206 DVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCP 285 (577)
Q Consensus 206 ~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~ 285 (577)
+++++|++.+.+ ++.+|.+|+||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|+
T Consensus 84 ~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA 160 (169)
T 4gpm_A 84 EVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN--TSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160 (169)
T ss_dssp HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred HHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 666666666655 45556666666666666666666666666555543 222345555555555555555555555555
Q ss_pred c
Q 008102 286 E 286 (577)
Q Consensus 286 ~ 286 (577)
+
T Consensus 161 ~ 161 (169)
T 4gpm_A 161 W 161 (169)
T ss_dssp -
T ss_pred C
Confidence 4
No 54
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=3.8e-32 Score=273.16 Aligned_cols=280 Identities=18% Similarity=0.128 Sum_probs=177.6
Q ss_pred ccceeeee-cCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHH
Q 008102 37 TILHVNII-SRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQ 115 (577)
Q Consensus 37 t~Lh~A~~-~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~ 115 (577)
+.+++|.. .++ .+.++++++ .+.++.||||+|++.|+.++|++|++.++...
T Consensus 67 l~~~~a~~~~~~---~~~~~~l~~-----------~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~------------- 119 (376)
T 2aja_A 67 LCLYYAHYNRNA---KQLWSDAHK-----------KGIKSEVICFVAAITGCSSALDTLCLLLTSDE------------- 119 (376)
T ss_dssp HHHHHHHTTTTC---TTHHHHHHH-----------HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCS-------------
T ss_pred HHHHHHHhcCCC---HHHHHHHHH-----------cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHH-------------
Confidence 34454444 344 555655543 34455689999999999999999888765211
Q ss_pred hhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCC--cCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCC--CCCCC
Q 008102 116 MLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVP--YSTNGCGETPLYMAAERGFEKMLTEILENCPSVAH--EGPSG 191 (577)
Q Consensus 116 ~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~g 191 (577)
.....+..|.||||+|++.|+.+++++|++++++.. ...+.+ .||||+|+..|+.+++++|+++|++++. .+..|
T Consensus 120 ~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g 198 (376)
T 2aja_A 120 IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAEN 198 (376)
T ss_dssp SCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCC
Confidence 012244567789999999999999999988886421 112222 7889999999999999999988888766 77778
Q ss_pred CCHHHHHH-HcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhh
Q 008102 192 KTALHAAA-VNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAG 270 (577)
Q Consensus 192 ~t~L~~A~-~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~ 270 (577)
.||||.|+ .. |+.+++++|++.+. .|.||||.|+..|+.+++++|++.+++... ..++++.|+.
T Consensus 199 ~TpL~~Aa~~~-G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~------~~~~l~~A~~ 263 (376)
T 2aja_A 199 YYAFRWAAVGR-GHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNRLKE------MHDAFKLSNP 263 (376)
T ss_dssp HHHHHHHHSTT-CCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHH------HHTTTTTTSS
T ss_pred CCHHHHHHHHC-CCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCccccc------ccHHHHHHHH
Confidence 88888888 88 88888888888543 277888888888888888888888766531 2247788888
Q ss_pred cCcHHHH------------HHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhcccccccc--ccCCCCCCCcHH
Q 008102 271 QGKLRVV------------EEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNL--INDKDKEGNTPL 336 (577)
Q Consensus 271 ~g~~~iv------------~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~--~n~~d~~G~TpL 336 (577)
+|+.+++ +.++..+.. +..+.+++|++. +..... ....++.++|||
T Consensus 264 ~g~~~vv~~~~~~~~~~~~~~li~~~~~-------------------~~~~~~~~Ll~~-~~vk~l~~~g~~~n~~~~~L 323 (376)
T 2aja_A 264 DGVFDLVTKSECLQGFYMLRNLIRRNDE-------------------VLLDDIRFLLSI-PGIKALAPTATIPGDANELL 323 (376)
T ss_dssp SSCCCCSSHHHHHHHHHHHHHHHHHCCG-------------------GGHHHHHHHHTS-TTTGGGSSCCSSTTCCCHHH
T ss_pred CCChhhhcHHhhhhhHHHHHHHHHcchh-------------------hHHHHHHHHHhC-hhhhhhhccCCCCCCccHHH
Confidence 8877643 333433211 123445555543 111111 122345678999
Q ss_pred HHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh-cCCcchHHH
Q 008102 337 HLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR-YGFPQLEQE 383 (577)
Q Consensus 337 h~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~-~~~~~~~~~ 383 (577)
|+|+..| ...+.++|++. ...++..|+|+++++. .|+.++.+.
T Consensus 324 ~~A~~~g-~~e~v~lLl~~---~~v~~~~~~~~~~~~~~~~~~~~~~~ 367 (376)
T 2aja_A 324 RLALRLG-NQGACALLLSI---PSVLALTKANNYYINETGGRLDLRAV 367 (376)
T ss_dssp HHHHHHT-CTTHHHHHTTS---HHHHHSCC------------------
T ss_pred HHHHHcC-cHHHHHHHHcC---hHHHHHHHHhccccccccccccHHHH
Confidence 9999999 45666666665 4889999999999998 777777654
No 55
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=3e-29 Score=241.54 Aligned_cols=200 Identities=22% Similarity=0.212 Sum_probs=134.9
Q ss_pred cCCCCcHHHHHHHhCCHHHHHHHHH----HHHcCCchhhccccchHHHhhccCCCCCCcHhHHHH---HcCCHHHHHHHH
Q 008102 72 NAKGDAPLHVAAKCGHASVVTALIE----IAKKQPKELESGVESTARQMLGMTNDEKNTALHEAM---QHRSLDVVKILI 144 (577)
Q Consensus 72 ~~~g~t~Lh~A~~~g~~~iv~~Ll~----~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~---~~g~~~~v~~Ll 144 (577)
+..|.|+||.|++.|+.+.++.|++ .+.+.+.. -...|..|.||||+|+ +.|+.+++++|+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~------------~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll 69 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDE------------EFREPSTGKTCLPKALLNLSAGRNDTIPILL 69 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG------------GGSCTTTCCCHHHHHHTSCBTTBCTHHHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchh------------hhhccCCCCcHHHHHHHHhhcCCHHHHHHHH
Confidence 4578899999999999997666666 54432110 0124578999999999 779999999999
Q ss_pred hcCCCC----------CcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCC--------------CCCCCHHHHHHH
Q 008102 145 KEDPAV----------PYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEG--------------PSGKTALHAAAV 200 (577)
Q Consensus 145 ~~~~~~----------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~--------------~~g~t~L~~A~~ 200 (577)
+.+.+. ....|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus 70 ~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~ 149 (260)
T 3jxi_A 70 DIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAAC 149 (260)
T ss_dssp HHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHH
T ss_pred HhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHH
Confidence 986432 12345579999999999999999999999999998887 456777777777
Q ss_pred cCCCHHHHHHHHh---hCCCccccCCCCCCcHHHHHHhcCc---------HHHHHHHhcCCCCccc-----hhcCCCCCc
Q 008102 201 NINSIDVVKLLLD---KKKSLIGETDRYGWTPLHYASYFDR---------NIIAELLLNSDKSLAY-----IVDNDRKMT 263 (577)
Q Consensus 201 ~~~~~~~~~~Ll~---~~~~~~~~~d~~g~tpL~~A~~~g~---------~~~v~~Ll~~~~~~~~-----~~~~~~g~t 263 (577)
. ++.+++++|++ .+.+ ++.+|..|+||||+|+..++ .+++++|++.|++++. ...+..|.|
T Consensus 150 ~-g~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~t 227 (260)
T 3jxi_A 150 T-NQPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLS 227 (260)
T ss_dssp T-TCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCC
T ss_pred c-CCHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCC
Confidence 6 66777777776 5555 56666666666666666554 4555555555544421 112224444
Q ss_pred chhHhhhcCcHHHHHHHHhhCC
Q 008102 264 ALHLAAGQGKLRVVEEIISYCP 285 (577)
Q Consensus 264 pL~~A~~~g~~~iv~~Ll~~~~ 285 (577)
|||+|+..|+.+++++|+++++
T Consensus 228 pL~~A~~~g~~~~v~~Ll~~g~ 249 (260)
T 3jxi_A 228 PLMMAAKTGKIGIFQHIIRREI 249 (260)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhCC
Confidence 4444444444444444444443
No 56
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=1.6e-27 Score=218.20 Aligned_cols=165 Identities=25% Similarity=0.304 Sum_probs=144.2
Q ss_pred cccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHh
Q 008102 66 SLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIK 145 (577)
Q Consensus 66 ~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~ 145 (577)
..++.+|..|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++
T Consensus 26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 89 (192)
T 2rfm_A 26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK----------------LEDKDIEGSTALIWAVKNNRLGIAEKLLS 89 (192)
T ss_dssp HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc----------------cccccccCccHHHHHHHcCCHHHHHHHHH
Confidence 34577888999999999999999999999998765 45678889999999999999999999999
Q ss_pred cCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCC
Q 008102 146 EDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRY 225 (577)
Q Consensus 146 ~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~ 225 (577)
.+++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+++++|++.+.+ ++.+|..
T Consensus 90 ~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~-~~~~~~~ 166 (192)
T 2rfm_A 90 KGSNVN-TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY-GRSEIVKKLLELGAD-ISARDLT 166 (192)
T ss_dssp HTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCC-TTCBCTT
T ss_pred CCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCC
Confidence 988775 6778899999999999999999999999999999999999999999998 899999999998877 6788888
Q ss_pred CCcHHHHHHhcCcHHHHHHHhcCC
Q 008102 226 GWTPLHYASYFDRNIIAELLLNSD 249 (577)
Q Consensus 226 g~tpL~~A~~~g~~~~v~~Ll~~~ 249 (577)
|.||||+|+..|+.+++++|++.+
T Consensus 167 g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 167 GLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp SCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCcHHHHHHHHhcc
Confidence 999999999999999998888754
No 57
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=4.7e-29 Score=234.69 Aligned_cols=205 Identities=15% Similarity=0.176 Sum_probs=162.6
Q ss_pred HHHHHhcCCCCC--cCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCC
Q 008102 140 VKILIKEDPAVP--YSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKS 217 (577)
Q Consensus 140 v~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~ 217 (577)
++.|++++.+.. ...+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++++|++.+.+
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~ga~ 79 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICG-ANYSIVDFLITAGAN 79 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCC
Confidence 456777766554 34456678889999999999999999999999999999999999999999 999999999999887
Q ss_pred ccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHh--hhcCcHHHHHHHHhhCCcccccccCCC
Q 008102 218 LIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLA--AGQGKLRVVEEIISYCPECCELVDGRG 295 (577)
Q Consensus 218 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A--~~~g~~~iv~~Ll~~~~~~~~~~d~~g 295 (577)
++..|..|+||||+|+..|+.+++++|++.+++++. .++..|.||||+| +..|+.+++++|++.+++ ++..|..|
T Consensus 80 -~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~ 156 (229)
T 2vge_A 80 -VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA-TTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGA 156 (229)
T ss_dssp -TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC-CCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGE
T ss_pred -CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-ccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCc
Confidence 788899999999999999999999999999888753 2334789999999 899999999999999888 67788888
Q ss_pred CchhhHHHhcCChhHHHHHHhcccccccc--ccCCCCCCCcHHHHHHHhCCccceeccccCc
Q 008102 296 WNVLHFAMVSFDASDLKHLLNNYPIVRNL--INDKDKEGNTPLHLLAALCRDSFHRIVPWNV 355 (577)
Q Consensus 296 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~--~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~ 355 (577)
.+++|.++..+.. ++|++. |++ ++.+|.+|+||||+|+..|+...+.+.+++.
T Consensus 157 ~~~l~~~~~~~~~---~~ll~~----ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l~~ 211 (229)
T 2vge_A 157 VYALWDYSAEFGD---ELSFRE----GESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGL 211 (229)
T ss_dssp EEESSCBCCSSTT---BCCBCT----TCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGEES
T ss_pred hHHHHHHhhcccc---ccCccc----cccccccccCCCcccHHHHHHHcCCcceeehhhhhh
Confidence 8998866554433 455665 555 7888999999999999998777776655543
No 58
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=231.89 Aligned_cols=191 Identities=23% Similarity=0.265 Sum_probs=111.5
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCC
Q 008102 75 GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYST 154 (577)
Q Consensus 75 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~ 154 (577)
+.+++|.|+..|+.+.++.+++.+.+ ..++.+|.+|.||||+|+..|+.+++++|++.++......
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~--------------~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~ 141 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLD--------------YVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQ 141 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHH--------------HHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHh--------------hcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCC
Confidence 34556666666666666666665432 2355566666666666666666666666666666333456
Q ss_pred CCCCChHHHHHH-----HhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcH
Q 008102 155 NGCGETPLYMAA-----ERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTP 229 (577)
Q Consensus 155 ~~~g~tpL~~A~-----~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tp 229 (577)
+..|.||||+|+ ..++.+++++|++.|.+.+..+..|.||||+|+.. |+.+++++|++.+.+ ++..|..|+||
T Consensus 142 ~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~-g~~~~v~~Ll~~gad-~n~~d~~G~Tp 219 (276)
T 4hbd_A 142 NRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSH-GRVDVVKALLACEAD-VNVQDDDGSTA 219 (276)
T ss_dssp CTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred CCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHhCCCC-CCCCCCCCCCH
Confidence 666666666666 44566666666666665555566666666666666 666666666666555 45555556666
Q ss_pred HHHHHhcCcHHHHHHHhc-CCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhh
Q 008102 230 LHYASYFDRNIIAELLLN-SDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISY 283 (577)
Q Consensus 230 L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~ 283 (577)
||+|+..|+.+++++|++ .+.+++ ..+..|.||||+|+..|+.+++++|+++
T Consensus 220 Lh~A~~~g~~~iv~~Ll~~~gad~~--~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 220 LMCACEHGHKEIAGLLLAVPSCDIS--LTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp HHHHHHHTCHHHHHHHHTSTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhcCCCCCc--CcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 666555555555555555 444443 1222445555555555555555555443
No 59
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=9.4e-28 Score=232.86 Aligned_cols=193 Identities=20% Similarity=0.250 Sum_probs=172.8
Q ss_pred CCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchH
Q 008102 34 NKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTA 113 (577)
Q Consensus 34 ~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~ 113 (577)
...+++|.|+..|+ .+.++.+++... ...++.+|.+|.||||+|+..|+.++|++|++.++..
T Consensus 75 ~~~~~l~~a~~~~~---~~~~~~l~~~~~--~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~------------ 137 (276)
T 4hbd_A 75 ACRSDAHPELVRRH---LVTFRAMSARLL--DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK------------ 137 (276)
T ss_dssp HHSTTCCHHHHHHH---HHHHHHHCHHHH--HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCC------------
T ss_pred HhccCCCHHHHHHH---HHHHHHHHHHHH--hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc------------
Confidence 34689999999999 999988866321 2347889999999999999999999999999987621
Q ss_pred HHhhccCCCCCCcHhHHHH-----HcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCC
Q 008102 114 RQMLGMTNDEKNTALHEAM-----QHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEG 188 (577)
Q Consensus 114 ~~~l~~~~~~g~t~Lh~A~-----~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~ 188 (577)
++..|..|.||||+|+ ..++.++++.|++.+.... ..+..|.||||+|+..|+.+++++|+++|++++.+|
T Consensus 138 ---~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d 213 (276)
T 4hbd_A 138 ---VDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEADVNVQD 213 (276)
T ss_dssp ---TTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred ---CCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Confidence 4678999999999999 6689999999999986654 678889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHcCCCHHHHHHHHh-hCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCC
Q 008102 189 PSGKTALHAAAVNINSIDVVKLLLD-KKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSD 249 (577)
Q Consensus 189 ~~g~t~L~~A~~~~~~~~~~~~Ll~-~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~ 249 (577)
..|.||||+|+.. ++.+++++|++ .+.+ ++.+|..|.||||+|+..|+.+++++|+++.
T Consensus 214 ~~G~TpLh~A~~~-g~~~iv~~Ll~~~gad-~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 214 DDGSTALMCACEH-GHKEIAGLLLAVPSCD-ISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp TTSCCHHHHHHHH-TCHHHHHHHHTSTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHC-CCHHHHHHHHhcCCCC-CcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 9999999999999 99999999999 5666 7899999999999999999999999999864
No 60
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=4.8e-27 Score=210.95 Aligned_cols=169 Identities=19% Similarity=0.205 Sum_probs=94.3
Q ss_pred CccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHH
Q 008102 36 NTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQ 115 (577)
Q Consensus 36 ~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~ 115 (577)
.+|||.|+..|+ .++++.+++ ..+..++.++..|.||||+|+..|+.+++++|++.+++
T Consensus 3 ~~~L~~A~~~g~---~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--------------- 61 (172)
T 3v30_A 3 SLSIHQLAAQGE---LDQLKEHLR---KGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD--------------- 61 (172)
T ss_dssp -CCHHHHHHTTC---HHHHHHHHT---TCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC---------------
T ss_pred hhhHHHHHHcCC---HHHHHHHHH---cCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------------
Confidence 456666666666 666655533 23344555566666666666666666666666665443
Q ss_pred hhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHH
Q 008102 116 MLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTAL 195 (577)
Q Consensus 116 ~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L 195 (577)
++..|..|.||||+|+..|+.+++++|++++.+++ ..|..|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus 62 -~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l 139 (172)
T 3v30_A 62 -PHILAKERESALSLASTGGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPM 139 (172)
T ss_dssp -TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred -chhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence 23455556666666666666666666666655543 4455566666666666666666666666666666666666666
Q ss_pred HHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcH
Q 008102 196 HAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTP 229 (577)
Q Consensus 196 ~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tp 229 (577)
|+|+.. ++.+++++|++++.+ ....+..|.||
T Consensus 140 ~~A~~~-~~~~~~~~L~~~~~~-~~~~~~~~~~p 171 (172)
T 3v30_A 140 DLAVAL-GYRKVQQVIENHILK-LFQSNLVPADP 171 (172)
T ss_dssp HHHHHH-TCHHHHHHHHHHHHH-HSCC-------
T ss_pred HHHHHh-CcHHHHHHHHHHHHH-HhcccCCCCCC
Confidence 666666 666666666665554 33444444443
No 61
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=4.4e-27 Score=208.92 Aligned_cols=159 Identities=23% Similarity=0.265 Sum_probs=120.6
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcC
Q 008102 74 KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS 153 (577)
Q Consensus 74 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~ 153 (577)
...||||.|+..|+.+++++|++.+.+ ++.+|..|.||||+|+. |+.+++++|++.+.+++ .
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~----------------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~ 65 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVN----------------VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD-L 65 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCC----------------TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT-C
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCC----------------ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC-C
Confidence 345788888888888888888775443 35567778888888877 88888888888777664 5
Q ss_pred CCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHH
Q 008102 154 TNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYA 233 (577)
Q Consensus 154 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A 233 (577)
++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.. ++.+++++|++.+.+..+..|..|.||||+|
T Consensus 66 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A 144 (162)
T 1ihb_A 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE-GHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144 (162)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHccCCCCCCcCCCCCcHHHHH
Confidence 677778888888888888888888888888877788888888888877 7888888888877765577777777888888
Q ss_pred HhcCcHHHHHHHhcCCCC
Q 008102 234 SYFDRNIIAELLLNSDKS 251 (577)
Q Consensus 234 ~~~g~~~~v~~Ll~~~~~ 251 (577)
+..|+.+++++|+++|++
T Consensus 145 ~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 145 RLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HHTTCHHHHHHHHHTC--
T ss_pred HHcCCHHHHHHHHHhCCC
Confidence 877777888877777653
No 62
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=8.9e-29 Score=232.77 Aligned_cols=204 Identities=18% Similarity=0.064 Sum_probs=169.3
Q ss_pred HHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCC
Q 008102 91 VTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGF 170 (577)
Q Consensus 91 v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 170 (577)
++.|++.+.++.. .+..+..|.||||.|+..|+.+++++|++.+.+++ ..|..|.||||+|+..|+
T Consensus 1 v~~ll~~~~~~~~-------------~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~tpLh~A~~~g~ 66 (229)
T 2vge_A 1 MRSVLRKAGSPRK-------------ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS-QPNEEGITALHNAICGAN 66 (229)
T ss_dssp ---------CCCC-------------CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTC
T ss_pred CeehhccCCCCcc-------------ccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHHcCC
Confidence 4567777766432 24466778899999999999999999999998876 688899999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCC-CCCCcHHHHH--HhcCcHHHHHHHhc
Q 008102 171 EKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETD-RYGWTPLHYA--SYFDRNIIAELLLN 247 (577)
Q Consensus 171 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d-~~g~tpL~~A--~~~g~~~~v~~Ll~ 247 (577)
.+++++|++.|++++..|..|.||||+|+.. ++.+++++|++.+.+ ++..+ ..|.||||+| +..|+.+++++|++
T Consensus 67 ~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~ 144 (229)
T 2vge_A 67 YSIVDFLITAGANVNSPDSHGWTPLHCAASC-NDTVICMALVQHGAA-IFATTLSDGATAFEKCDPYREGYADCATYLAD 144 (229)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTTTCC-TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHhcChHHHHHHHHH
Confidence 9999999999999999999999999999999 999999999999988 45554 7999999999 99999999999999
Q ss_pred CCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcc-cccccCCCCchhhHHHhcCChhHHHHHH
Q 008102 248 SDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPEC-CELVDGRGWNVLHFAMVSFDASDLKHLL 315 (577)
Q Consensus 248 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~-~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll 315 (577)
.|++++. .+..+.+|++.++..+.. +.|++.+++. ++.+|..|+||||+|+.+|+.++++..+
T Consensus 145 ~ga~~~~--~~~~~~~~l~~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~ 208 (229)
T 2vge_A 145 VEQSMGL--MNSGAVYALWDYSAEFGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208 (229)
T ss_dssp HHHHTTT--SGGGEEEESSCBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred cCCCccc--ccCCchHHHHHHhhcccc---ccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence 9988753 334688999977666544 5667777763 5678999999999999999999998643
No 63
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.94 E-value=7.5e-27 Score=209.67 Aligned_cols=158 Identities=25% Similarity=0.254 Sum_probs=107.4
Q ss_pred CCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCC
Q 008102 124 KNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNIN 203 (577)
Q Consensus 124 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~ 203 (577)
+.||||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. +
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG-G 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT-T
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC-C
Confidence 457888888888888888888888775567788888888888888888888888888888888888888888888887 7
Q ss_pred CHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhh
Q 008102 204 SIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISY 283 (577)
Q Consensus 204 ~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~ 283 (577)
+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|+++
T Consensus 81 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (172)
T 3v30_A 81 YTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT--TEADSGYTPMDLAVALGYRKVQQVIENH 157 (172)
T ss_dssp CHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence 88888888777666 45566666666666666666666665555554442 1122344444444444444444444444
Q ss_pred CC
Q 008102 284 CP 285 (577)
Q Consensus 284 ~~ 285 (577)
++
T Consensus 158 ~~ 159 (172)
T 3v30_A 158 IL 159 (172)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 64
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.94 E-value=1.2e-26 Score=212.29 Aligned_cols=164 Identities=20% Similarity=0.187 Sum_probs=134.8
Q ss_pred HhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCH
Q 008102 115 QMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTA 194 (577)
Q Consensus 115 ~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~ 194 (577)
..++.+|..|.||||+|+..|+.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 104 (192)
T 2rfm_A 26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTP 104 (192)
T ss_dssp HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccc-cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence 3467788899999999999999999999999887765 677789999999999999999999999999888888889999
Q ss_pred HHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcH
Q 008102 195 LHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKL 274 (577)
Q Consensus 195 L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~ 274 (577)
||+|+.. ++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+.++. ..+..|.||+|+|+..|+.
T Consensus 105 L~~A~~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~~A~~~~~~ 180 (192)
T 2rfm_A 105 LMWSIIF-GYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS--ARDLTGLTAEASARIFGRQ 180 (192)
T ss_dssp HHHHHHH-TCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CBCTTSCBHHHHHHHTTCH
T ss_pred HHHHHHc-CCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHHHHHHhCcH
Confidence 9999988 888999998888877 67778888888888888888888888888777664 2334677777777777777
Q ss_pred HHHHHHHhh
Q 008102 275 RVVEEIISY 283 (577)
Q Consensus 275 ~iv~~Ll~~ 283 (577)
+++++|++.
T Consensus 181 ~~v~~Ll~~ 189 (192)
T 2rfm_A 181 EVIKIFTEV 189 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777777764
No 65
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=1.3e-26 Score=207.14 Aligned_cols=159 Identities=19% Similarity=0.241 Sum_probs=117.5
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcC
Q 008102 74 KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS 153 (577)
Q Consensus 74 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~ 153 (577)
.|.||||.|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++++.+++ .
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~ 64 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV----------------INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-L 64 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC----------------cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-C
Confidence 467777888887888877777776533 45567777777777777777777777777776654 5
Q ss_pred CCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHH
Q 008102 154 TNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYA 233 (577)
Q Consensus 154 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A 233 (577)
.+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+.. ++.+++++|++.+.+ ++..|..|.||||+|
T Consensus 65 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A 142 (167)
T 3v31_A 65 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG-NHVKCVKMLLESGAD-PTIETDSGYNSMDLA 142 (167)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHH
Confidence 566777777777777777777777777777777777777777777777 777777777777666 566777777777777
Q ss_pred HhcCcHHHHHHHhcCCCC
Q 008102 234 SYFDRNIIAELLLNSDKS 251 (577)
Q Consensus 234 ~~~g~~~~v~~Ll~~~~~ 251 (577)
+..|+.+++++|++++.+
T Consensus 143 ~~~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 143 VALGYRSVQQVIESHLLK 160 (167)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHH
Confidence 777777777777765443
No 66
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=2.6e-26 Score=205.47 Aligned_cols=160 Identities=25% Similarity=0.353 Sum_probs=115.0
Q ss_pred ccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCC
Q 008102 71 VNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAV 150 (577)
Q Consensus 71 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~ 150 (577)
....+.|+||.|++.|+.++|++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++++.++
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 73 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGAD----------------VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCC----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 344556777777777777777777776544 3456677777777777777777777777777665
Q ss_pred CcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHH
Q 008102 151 PYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPL 230 (577)
Q Consensus 151 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL 230 (577)
+ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+.. ++.+++++|++.+.+ ++..|..|.|||
T Consensus 74 ~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~l 150 (169)
T 2y1l_E 74 N-AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF-GHLEIVEVLLKNGAD-VNAQDKFGKTAF 150 (169)
T ss_dssp T-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred C-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC-CCCcCCCCCCHH
Confidence 4 5566677777777777777777777777777777777777777777777 777777777777766 566677777777
Q ss_pred HHHHhcCcHHHHHHHhcCC
Q 008102 231 HYASYFDRNIIAELLLNSD 249 (577)
Q Consensus 231 ~~A~~~g~~~~v~~Ll~~~ 249 (577)
|+|+..|+.+++++|++.|
T Consensus 151 ~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 151 DISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHHHHTTCHHHHHHHHTC-
T ss_pred HHHHHhCCHHHHHHHHHcC
Confidence 7777777777777777653
No 67
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=4e-26 Score=203.88 Aligned_cols=159 Identities=25% Similarity=0.292 Sum_probs=127.9
Q ss_pred CCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcC
Q 008102 123 EKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNI 202 (577)
Q Consensus 123 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 202 (577)
.|.||||.|+..|+.+++++|++.+.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~- 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVIN-HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSK- 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc-
Confidence 57889999999999999999998887654 6777888999999999999999999988888888888888888888888
Q ss_pred CCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHh
Q 008102 203 NSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282 (577)
Q Consensus 203 ~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~ 282 (577)
++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++++.++. ..+..|.||||+|+..|+.+++++|++
T Consensus 80 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 80 GYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT--IETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp TCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 888888888888777 67777788888888888888888888887777664 233467777777777777777777777
Q ss_pred hCCc
Q 008102 283 YCPE 286 (577)
Q Consensus 283 ~~~~ 286 (577)
++++
T Consensus 157 ~~~~ 160 (167)
T 3v31_A 157 HLLK 160 (167)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 68
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=3.6e-26 Score=203.01 Aligned_cols=158 Identities=23% Similarity=0.247 Sum_probs=120.2
Q ss_pred CCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcC
Q 008102 123 EKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNI 202 (577)
Q Consensus 123 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 202 (577)
...||||.|++.|+.+++++|++++.+++ ..+..|.||||+|+. |+.+++++|+++|++++.++..|.||||.|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~- 80 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA- 80 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCcc-ccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-
Confidence 35688888888888888888888887764 667778888888888 888888888888888888888888888888888
Q ss_pred CCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHh
Q 008102 203 NSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282 (577)
Q Consensus 203 ~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~ 282 (577)
++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+++.... .+..|.||||+|+..|+.+++++|++
T Consensus 81 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~ 158 (162)
T 1ihb_A 81 GFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH-RNHKGDTACDLARLYGRNEVVSLMQA 158 (162)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCC-cCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 888888888887766 5677777777777777777777777777776654222 22356667777776666677766666
Q ss_pred hCC
Q 008102 283 YCP 285 (577)
Q Consensus 283 ~~~ 285 (577)
+|+
T Consensus 159 ~GA 161 (162)
T 1ihb_A 159 NGA 161 (162)
T ss_dssp TC-
T ss_pred hCC
Confidence 664
No 69
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=1.3e-25 Score=197.40 Aligned_cols=150 Identities=23% Similarity=0.270 Sum_probs=116.2
Q ss_pred CcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCC
Q 008102 76 DAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTN 155 (577)
Q Consensus 76 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~ 155 (577)
.||||.|++.|+.+++++|++.+.+. + .+..|.||||+|+..|+.+++++|++.+.+++ ..+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~----------------~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~ 64 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPF----------------T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ART 64 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCC----------------C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCC----------------C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCC
Confidence 47788888888888888888776531 1 46677888888888888888888888777664 566
Q ss_pred CCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHh
Q 008102 156 GCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASY 235 (577)
Q Consensus 156 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~ 235 (577)
..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+++++|++.+.+ ++.+|..|.||||+|+.
T Consensus 65 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~ 142 (153)
T 1awc_B 65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH-NHQEVVELLIKYGAD-VHTQSKFCKTAFDISID 142 (153)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred CCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHH
Confidence 7788888888888888888888888888887788888888888887 788888888887776 56777778888888888
Q ss_pred cCcHHHHHHH
Q 008102 236 FDRNIIAELL 245 (577)
Q Consensus 236 ~g~~~~v~~L 245 (577)
.|+.+++++|
T Consensus 143 ~~~~~i~~~L 152 (153)
T 1awc_B 143 NGNEDLAEIL 152 (153)
T ss_dssp TTCHHHHHHH
T ss_pred cCCHHHHHHh
Confidence 8887777765
No 70
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=1e-25 Score=200.82 Aligned_cols=161 Identities=24% Similarity=0.282 Sum_probs=138.9
Q ss_pred CCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Q 008102 120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAA 199 (577)
Q Consensus 120 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~ 199 (577)
.|.+|.||||.|++.|+.++++.|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC 83 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence 56778999999999999999999999776666677888999999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHH
Q 008102 200 VNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEE 279 (577)
Q Consensus 200 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~ 279 (577)
.. ++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++++.+++ ..+..|.||+|+|+. |+.+++++
T Consensus 84 ~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~~a~~-~~~~i~~~ 158 (165)
T 3twr_A 84 SY-GHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT--KKNRDGNTPLDLVKD-GDTDIQDL 158 (165)
T ss_dssp HT-TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCTGGGSCT-TCHHHHHH
T ss_pred Hc-CcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCChhHhHhc-CChHHHHH
Confidence 99 999999999999887 68888889999999999999999999999888775 334578888888766 77888888
Q ss_pred HHhhCC
Q 008102 280 IISYCP 285 (577)
Q Consensus 280 Ll~~~~ 285 (577)
|+++++
T Consensus 159 L~~~gA 164 (165)
T 3twr_A 159 LRGDAA 164 (165)
T ss_dssp HHTC--
T ss_pred Hhhccc
Confidence 887654
No 71
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.93 E-value=1.7e-25 Score=200.17 Aligned_cols=159 Identities=26% Similarity=0.377 Sum_probs=107.9
Q ss_pred CCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Q 008102 120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAA 199 (577)
Q Consensus 120 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~ 199 (577)
....+.++|+.|++.|+.+++++|++++.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 88 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGADVN-AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA 88 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence 34455677777777777777777777776664 56667777777777777777777777777777777777777777777
Q ss_pred HcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHH
Q 008102 200 VNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEE 279 (577)
Q Consensus 200 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~ 279 (577)
.. ++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+..|+.+++++
T Consensus 89 ~~-~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~~A~~~~~~~~~~~ 164 (169)
T 2y1l_E 89 LF-GHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN--AQDKFGKTAFDISIDNGNEDLAEI 164 (169)
T ss_dssp HT-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred Hc-CCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHhCCHHHHHH
Confidence 77 777777777777666 56666666667666666666666666666665553 223356666666666666666666
Q ss_pred HHhh
Q 008102 280 IISY 283 (577)
Q Consensus 280 Ll~~ 283 (577)
|++.
T Consensus 165 L~~~ 168 (169)
T 2y1l_E 165 LQKL 168 (169)
T ss_dssp HHTC
T ss_pred HHHc
Confidence 6554
No 72
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=6.4e-26 Score=202.08 Aligned_cols=161 Identities=25% Similarity=0.271 Sum_probs=144.9
Q ss_pred ccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCC
Q 008102 71 VNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAV 150 (577)
Q Consensus 71 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~ 150 (577)
.|.+|.||||.|++.|+.++++.|++.+.. ..+..+..|.||||+|+..|+.+++++|++++.++
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~---------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 68 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSV---------------NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 68 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTT---------------TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCC---------------CccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC
Confidence 467789999999999999999999985322 24557788999999999999999999999999887
Q ss_pred CcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHH
Q 008102 151 PYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPL 230 (577)
Q Consensus 151 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL 230 (577)
+ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+++++|++.+.+ ++.+|..|.|||
T Consensus 69 ~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~-~~~~~~~g~t~l 145 (165)
T 3twr_A 69 H-AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK-GKYEICKLLLQHGAD-PTKKNRDGNTPL 145 (165)
T ss_dssp T-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTSCCTG
T ss_pred C-ccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC-CcccCCCCCChh
Confidence 5 6788899999999999999999999999999999999999999999999 999999999999888 789999999999
Q ss_pred HHHHhcCcHHHHHHHhcCCC
Q 008102 231 HYASYFDRNIIAELLLNSDK 250 (577)
Q Consensus 231 ~~A~~~g~~~~v~~Ll~~~~ 250 (577)
|+|+. |+.+++++|++.|+
T Consensus 146 ~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 146 DLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp GGSCT-TCHHHHHHHHTC--
T ss_pred HhHhc-CChHHHHHHhhccc
Confidence 99777 99999999998874
No 73
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.93 E-value=3.2e-25 Score=200.44 Aligned_cols=161 Identities=19% Similarity=0.231 Sum_probs=133.5
Q ss_pred CCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHc
Q 008102 122 DEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVN 201 (577)
Q Consensus 122 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~ 201 (577)
.++.++||.|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH 82 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 35678999999999999999999987666667888899999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHH
Q 008102 202 INSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEII 281 (577)
Q Consensus 202 ~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll 281 (577)
++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++++++. ..+..|.|||++|+..++.+++++|+
T Consensus 83 -~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~~A~~~~~~~~~~~L~ 158 (179)
T 3f6q_A 83 -GHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS--ICNKYGEMPVDKAKAPLRELLRERAE 158 (179)
T ss_dssp -TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS--BCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc--hhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 899999999998877 67788888888888888888888888888887764 33446778888887777777777777
Q ss_pred hhCCc
Q 008102 282 SYCPE 286 (577)
Q Consensus 282 ~~~~~ 286 (577)
+.+++
T Consensus 159 ~~g~~ 163 (179)
T 3f6q_A 159 KMGQN 163 (179)
T ss_dssp HTTCC
T ss_pred HhhcC
Confidence 77776
No 74
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.93 E-value=3.2e-25 Score=194.90 Aligned_cols=151 Identities=24% Similarity=0.312 Sum_probs=120.2
Q ss_pred CCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCC
Q 008102 124 KNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNIN 203 (577)
Q Consensus 124 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~ 203 (577)
..||||.|++.|+.+++++|++.+++.. .+..|.||||+|+..|+.+++++|++.|++++..+..|.||||.|+.. +
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~ 78 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE-G 78 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH-T
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-C
Confidence 3578999999999999999998887654 577788999999999999999999988888888888888888888888 8
Q ss_pred CHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHH
Q 008102 204 SIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEI 280 (577)
Q Consensus 204 ~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~L 280 (577)
+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|
T Consensus 79 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 79 HANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH--TQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 88888888888776 57777778888888888777777777777776654 2333566777777777777776654
No 75
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=2.9e-25 Score=195.79 Aligned_cols=154 Identities=23% Similarity=0.261 Sum_probs=126.6
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCC
Q 008102 75 GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYST 154 (577)
Q Consensus 75 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~ 154 (577)
+.||||.|+..|+.+++++|++. ... .++..|..|.||||+ +..|+.+++++|++.|.+++ ..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~--------------~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~ 64 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR-ELV--------------HPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQ 64 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-TCC--------------CTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CC
T ss_pred cchHHHHHHHhCCHHHHHHHHHh-hCc--------------CccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-Cc
Confidence 45888888888888888888886 210 145677888888888 88888888888888887765 67
Q ss_pred CCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHH
Q 008102 155 NGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYAS 234 (577)
Q Consensus 155 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~ 234 (577)
|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+++++|++. .+ ++..|..|.||||+|+
T Consensus 65 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~ 141 (156)
T 1bd8_A 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE-GHTAVVSFLAAE-SD-LHRRDARGLTPLELAL 141 (156)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH-TCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHh-ChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHH
Confidence 77888888888888888888888888888888888888888888888 888888888887 44 6778888888888888
Q ss_pred hcCcHHHHHHHhcC
Q 008102 235 YFDRNIIAELLLNS 248 (577)
Q Consensus 235 ~~g~~~~v~~Ll~~ 248 (577)
..|+.+++++|+++
T Consensus 142 ~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 142 QRGAQDLVDILQGH 155 (156)
T ss_dssp HSCCHHHHHHHHTT
T ss_pred HcCcHHHHHHHHhh
Confidence 88888888888764
No 76
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=7.2e-27 Score=221.71 Aligned_cols=217 Identities=16% Similarity=0.143 Sum_probs=120.5
Q ss_pred CCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHH
Q 008102 121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAV 200 (577)
Q Consensus 121 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~ 200 (577)
+..|.||||.|++.|+.+.++.|+++|.++.. +..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+.
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC 79 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 34578888888888888888888888877652 3557788888888888888888888888888888888888888888
Q ss_pred cCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHh--hhcCcHHHHH
Q 008102 201 NINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLA--AGQGKLRVVE 278 (577)
Q Consensus 201 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A--~~~g~~~iv~ 278 (577)
. |+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|++++++++. .+...+.||||+| +..|+.++++
T Consensus 80 ~-g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~~~~t~l~~a~~~~~g~~~~~~ 156 (239)
T 1ycs_B 80 A-GHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA-MTYSDMQTAADKCEEMEEGYTQCSQ 156 (239)
T ss_dssp H-TCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred c-CCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcce-ecCCCCcchHHHHHHhhhccHHHHH
Confidence 8 788888888887766 577777777777777777777777777777666542 2221233666666 5555566666
Q ss_pred HHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccc
Q 008102 279 EIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGD 358 (577)
Q Consensus 279 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d 358 (577)
+|++.+++ .+..+. +......|..|.|+++++.+.|. +..++...+.+
T Consensus 157 ~Ll~~~a~-~~~~~~----------------------------~~~~al~d~~~~~~~eLa~~~G~---~i~vl~~~~~~ 204 (239)
T 1ycs_B 157 FLYGVQEK-MGIMNK----------------------------GVIYALWDYEPQNDDELPMKEGD---CMTIIHREDED 204 (239)
T ss_dssp HHHHHHHH-TTTTGG----------------------------GEEEESSCBCCSSTTBCCBCSSC---EEEECCCCTTS
T ss_pred HHHHhhhc-cccccc----------------------------ceEEEEeccCCCCCCcccccCCC---EEEEEEecCCC
Confidence 66655544 221111 11122336778888888877763 33444444433
Q ss_pred ------hhhhhhCCCChHHHHh
Q 008102 359 ------YQAVNKQNISVKHITR 374 (577)
Q Consensus 359 ------~~~~n~~G~t~l~~a~ 374 (577)
....++.|.+|..+..
T Consensus 205 ~~~Ww~~~~~~~~G~~P~~yv~ 226 (239)
T 1ycs_B 205 EIEWWWARLNDKEGYVPRNLLG 226 (239)
T ss_dssp CSSEEEEEETTEEEEEEGGGEE
T ss_pred CCCEEEEEECCcEEEeehHHee
Confidence 2456778888888775
No 77
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.93 E-value=2.8e-27 Score=237.80 Aligned_cols=253 Identities=11% Similarity=-0.017 Sum_probs=192.2
Q ss_pred CcHHHHHHH-hCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCC--c
Q 008102 76 DAPLHVAAK-CGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVP--Y 152 (577)
Q Consensus 76 ~t~Lh~A~~-~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--~ 152 (577)
.+++++|.. .++.++++++++. +.+++||||+|++.|+.+++++|++++.... .
T Consensus 66 ll~~~~a~~~~~~~~~~~~l~~~-----------------------g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~ 122 (376)
T 2aja_A 66 LLCLYYAHYNRNAKQLWSDAHKK-----------------------GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK 122 (376)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHHH-----------------------TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHc-----------------------CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHH
Confidence 356677666 4677788888765 3345699999999999999999999986321 1
Q ss_pred CCCCCCChHHHHHHHhCCHHHHHHHHHhCCCC---CCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCcccc--CCCCCC
Q 008102 153 STNGCGETPLYMAAERGFEKMLTEILENCPSV---AHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGE--TDRYGW 227 (577)
Q Consensus 153 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~--~d~~g~ 227 (577)
..+..|.||||+|+..|+.+++++|+++|+++ +..+.+ .||||.|+.. |+.+++++|++.+++ .+. .|..|.
T Consensus 123 ~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~-G~~eiv~~Ll~~ga~-~~~~~~d~~g~ 199 (376)
T 2aja_A 123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAEN-GHLHVLNRLCELAPT-EATAMIQAENY 199 (376)
T ss_dssp --CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHT-TCHHHHHHHHHSCGG-GHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHC-CCHHHHHHHHHcCCc-cchhccCCCCC
Confidence 34556889999999999999999999999762 222333 8999999999 999999999999887 444 778899
Q ss_pred cHHHHHH-hcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcC
Q 008102 228 TPLHYAS-YFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSF 306 (577)
Q Consensus 228 tpL~~A~-~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~ 306 (577)
||||+|+ ..|+.+++++|++.+. .|.||||.|+.+|+.+++++|++++++ .+..| ++++.|+.+|
T Consensus 200 TpL~~Aa~~~G~~eiv~~Ll~~ga---------~~~taL~~Aa~~g~~evv~lL~~~ga~-~~~~~----~~l~~A~~~g 265 (376)
T 2aja_A 200 YAFRWAAVGRGHHNVINFLLDCPV---------MLAYAEIHEFEYGEKYVNPFIARHVNR-LKEMH----DAFKLSNPDG 265 (376)
T ss_dssp HHHHHHHSTTCCHHHHHHHTTSHH---------HHHHHHHCTTTTTTTTHHHHHHHHHHH-HHHHH----TTTTTTSSSS
T ss_pred CHHHHHHHHCCCHHHHHHHHhCCC---------ccchHHHHHHHCCCHHHHHHHHhcCcc-ccccc----HHHHHHHHCC
Confidence 9999999 9999999999999653 267999999999999999999999877 33333 5889999999
Q ss_pred ChhHH------------HHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh
Q 008102 307 DASDL------------KHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR 374 (577)
Q Consensus 307 ~~~~v------------~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~ 374 (577)
+.+++ +.++.+ + +.+.++.+.... .....+.+.+.|++++ .+.||+++|.
T Consensus 266 ~~~vv~~~~~~~~~~~~~~li~~----~---------~~~~~~~~~~Ll-~~~~vk~l~~~g~~~n----~~~~~L~~A~ 327 (376)
T 2aja_A 266 VFDLVTKSECLQGFYMLRNLIRR----N---------DEVLLDDIRFLL-SIPGIKALAPTATIPG----DANELLRLAL 327 (376)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHH----C---------CGGGHHHHHHHH-TSTTTGGGSSCCSSTT----CCCHHHHHHH
T ss_pred ChhhhcHHhhhhhHHHHHHHHHc----c---------hhhHHHHHHHHH-hChhhhhhhccCCCCC----CccHHHHHHH
Confidence 88854 334433 1 122333333322 1223455667787775 4558999999
Q ss_pred -cCCcchHHHHHH
Q 008102 375 -YGFPQLEQEIRE 386 (577)
Q Consensus 375 -~~~~~~~~~l~~ 386 (577)
.|+.++++.|.+
T Consensus 328 ~~g~~e~v~lLl~ 340 (376)
T 2aja_A 328 RLGNQGACALLLS 340 (376)
T ss_dssp HHTCTTHHHHHTT
T ss_pred HcCcHHHHHHHHc
Confidence 899999998876
No 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.92 E-value=1.4e-26 Score=219.77 Aligned_cols=129 Identities=19% Similarity=0.165 Sum_probs=104.9
Q ss_pred CCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHc
Q 008102 122 DEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVN 201 (577)
Q Consensus 122 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~ 201 (577)
..|.||||.|+..|+.++++.|++.+++++ ..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..
T Consensus 35 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~ 113 (239)
T 1ycs_B 35 PLPLALLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC 113 (239)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT
T ss_pred chhhHHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence 557788888888888888888888887664 6677888888888888888888888888888888888888888888888
Q ss_pred CCCHHHHHHHHhhCCCccccCCCCCC-cHHHHH--HhcCcHHHHHHHhcCCCCcc
Q 008102 202 INSIDVVKLLLDKKKSLIGETDRYGW-TPLHYA--SYFDRNIIAELLLNSDKSLA 253 (577)
Q Consensus 202 ~~~~~~~~~Ll~~~~~~~~~~d~~g~-tpL~~A--~~~g~~~~v~~Ll~~~~~~~ 253 (577)
++.+++++|++.+.+ ++..+..|. ||||+| +..|+.+++++|++.+++..
T Consensus 114 -~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~ 166 (239)
T 1ycs_B 114 -NNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG 166 (239)
T ss_dssp -TCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTT
T ss_pred -CCHHHHHHHHHcCCC-cceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhccc
Confidence 888888888888877 566666555 888888 67788888888888877654
No 79
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.92 E-value=8.6e-25 Score=192.76 Aligned_cols=154 Identities=23% Similarity=0.310 Sum_probs=113.3
Q ss_pred CCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCC
Q 008102 124 KNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNIN 203 (577)
Q Consensus 124 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~ 203 (577)
+.||||.|+..|+.++++.|++..+......+..|.||||+ +..|+.+++++|+++|++++.++..|.||||.|+.. +
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART-G 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-T
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-C
Confidence 45788888888888888888887333344677778888888 888888888888888888888888888888888888 8
Q ss_pred CHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhh
Q 008102 204 SIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISY 283 (577)
Q Consensus 204 ~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~ 283 (577)
+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++. .+++ ..+..|.||||+|+..|+.+++++|+++
T Consensus 80 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~--~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 80 FLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH--RRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT--CCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC--CcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 88888888887766 567777777777777777777777777776 4443 2233566666666666666666666653
No 80
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.92 E-value=7.4e-25 Score=197.99 Aligned_cols=167 Identities=18% Similarity=0.159 Sum_probs=118.0
Q ss_pred CCChHHHHHHHhCCHHHHHHHHHhC-CCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHh
Q 008102 157 CGETPLYMAAERGFEKMLTEILENC-PSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASY 235 (577)
Q Consensus 157 ~g~tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~ 235 (577)
.+.+||+.|+..|+.+++++|++.+ .+++..+..|.||||.|+.. ++.+++++|++.+.+ ++..|..|.||||+|+.
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACRE-GRSAVVEMLIMRGAR-INVMNRGDDTPLHLAAS 81 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHc-CcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence 3567777888888888887777773 56677777777777777777 777777777777766 56677777777777777
Q ss_pred cCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHH
Q 008102 236 FDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLL 315 (577)
Q Consensus 236 ~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll 315 (577)
.|+.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..++.+++++|+
T Consensus 82 ~~~~~~v~~Ll~~g~~~~--~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~L~ 158 (179)
T 3f6q_A 82 HGHRDIVQKLLQYKADIN--AVNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELLRERAE 158 (179)
T ss_dssp TTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCCC--ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 777777777777776664 2234667777777777777777777777766 5666777777777777777777777777
Q ss_pred hccccccccccCCCCCC
Q 008102 316 NNYPIVRNLINDKDKEG 332 (577)
Q Consensus 316 ~~~~~~~~~~n~~d~~G 332 (577)
+. |++++..+.++
T Consensus 159 ~~----g~~~~~~~~~~ 171 (179)
T 3f6q_A 159 KM----GQNLNRIPYKD 171 (179)
T ss_dssp HT----TCCCSCBCCCC
T ss_pred Hh----hcCcccCCccc
Confidence 76 66666655544
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.90 E-value=2.4e-23 Score=178.84 Aligned_cols=132 Identities=18% Similarity=0.195 Sum_probs=95.9
Q ss_pred cccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHh
Q 008102 66 SLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIK 145 (577)
Q Consensus 66 ~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~ 145 (577)
..++..+..|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+. |+.+++++|++
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~ 65 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD----------------PNALNRFGRRPIQVMMM-GSAQVAELLLL 65 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTCCTTTTTSTT-SCHHHHHHHHH
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC----------------cCCcCCCCCCHHHHHHc-CCHHHHHHHHH
Confidence 34566777777777777777777777777776544 34566777777777777 77777777777
Q ss_pred cCCCCCcCCCCC-CChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCC
Q 008102 146 EDPAVPYSTNGC-GETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKK 216 (577)
Q Consensus 146 ~~~~~~~~~~~~-g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~ 216 (577)
++.+++ .++.. |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.. ++.+++++|++++.
T Consensus 66 ~g~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~-~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 66 HGAEPN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ-GHRDIARYLHAATG 135 (136)
T ss_dssp HTCCSS-CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHH-TCHHHHHHHHHHHC
T ss_pred CCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCC
Confidence 777665 45555 77777777777777777777777777777777777777777777 77777777777654
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.89 E-value=1.2e-23 Score=185.38 Aligned_cols=145 Identities=17% Similarity=0.066 Sum_probs=109.2
Q ss_pred ccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCc-h
Q 008102 220 GETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWN-V 298 (577)
Q Consensus 220 ~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t-~ 298 (577)
...+..|.||||+|+..|+.+++++|++.+.+++ ..+..|.||||+|+ .|+.+++++|++++.+ ++.+|..|+| |
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttp 81 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPN--APNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRP 81 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTT--CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHH
Confidence 4556778899999999999999999999887765 33447899999985 8999999999999888 7888999998 9
Q ss_pred hhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHH
Q 008102 299 LHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHIT 373 (577)
Q Consensus 299 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a 373 (577)
||+|+..++.+++++|+++ |+++|.+|.+|+||||+|+..+ ...+.++|+++|++++.+|..|.||.+-+
T Consensus 82 L~~A~~~~~~~~v~~Ll~~----ga~~~~~d~~g~tpl~~A~~~~-~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 82 VHDAAREGFLDTLVVLHRA----GARLDVRDAWGRLPVDLAEELG-HRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHH----TCCSSCCCTTCCCHHHHHHHHT-CHHHHHHHSSCC-----------------
T ss_pred HHHHHHCCCHHHHHHHHHc----CCCCcccCCCCCCHHHHHHHhC-HHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 9999999999999999998 8999999999999999999998 56777888899999999999999987643
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.89 E-value=4.3e-23 Score=181.85 Aligned_cols=142 Identities=18% Similarity=0.153 Sum_probs=86.5
Q ss_pred cccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCC
Q 008102 70 SVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPA 149 (577)
Q Consensus 70 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~ 149 (577)
..+..|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+ .|+.+++++|++++.+
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~ 69 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGAN----------------PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE 69 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCC----------------TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCC----------------CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC
Confidence 3456667777777777777777777766544 3456667777777764 6777777777777666
Q ss_pred CCcCCCCCCCh-HHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCc
Q 008102 150 VPYSTNGCGET-PLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWT 228 (577)
Q Consensus 150 ~~~~~~~~g~t-pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t 228 (577)
++ .++..|.| |||+|+..|+.+++++|+++|++++.++..|.||||+|+.. ++.+++++|++.+.+ ++..+..|.|
T Consensus 70 ~~-~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~-~~~~~v~~Ll~~ga~-~~~~~~~g~t 146 (156)
T 1bi7_B 70 PN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL-GHRDVARYLRAAAGG-TRGSNHARID 146 (156)
T ss_dssp CC-CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHSSCC-------------
T ss_pred CC-CcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHh-CHHHHHHHHHHcCCC-CCccCcCcCc
Confidence 54 55666666 77777777777777777777777777777777777777777 777777777776666 5666666666
Q ss_pred HHH
Q 008102 229 PLH 231 (577)
Q Consensus 229 pL~ 231 (577)
|.+
T Consensus 147 ~~~ 149 (156)
T 1bi7_B 147 AAE 149 (156)
T ss_dssp ---
T ss_pred ccc
Confidence 655
No 84
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.89 E-value=6.4e-23 Score=176.16 Aligned_cols=131 Identities=18% Similarity=0.241 Sum_probs=118.4
Q ss_pred hccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCC-CCCHH
Q 008102 117 LGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPS-GKTAL 195 (577)
Q Consensus 117 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-g~t~L 195 (577)
++.+|..|.||||+|++.|+.+++++|++++.+++ .++..|.||||+|+. |+.+++++|+++|++++.++.. |.|||
T Consensus 5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L 82 (136)
T 1d9s_A 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPN-ALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPV 82 (136)
T ss_dssp CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence 56788999999999999999999999999988775 678889999999999 9999999999999999999998 89999
Q ss_pred HHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCC
Q 008102 196 HAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKS 251 (577)
Q Consensus 196 ~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 251 (577)
|+|+.. ++.+++++|++.+.+ ++.+|..|.||||+|+..++.+++++|+++|++
T Consensus 83 ~~A~~~-~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 83 HDAARE-GFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHH-TCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHc-CCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999 999999999998887 688888999999999999999999999887653
No 85
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.88 E-value=7.6e-24 Score=191.81 Aligned_cols=158 Identities=13% Similarity=0.067 Sum_probs=129.0
Q ss_pred HHHHHHHHcCCcHHHHHhhhhcCCccccCCCCccceeeeecCCcc-chHHHHHHHHHHhhCccccccccCCCCcHHHHHH
Q 008102 5 PLLYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRE-TIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAA 83 (577)
Q Consensus 5 ~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~g~t~Lh~A~~~g~~~-~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~ 83 (577)
++|+.|++.|+.+.++.+++.+++...+..|.||||+|+.+|+.+ ..+++++|++ .+..++.+|..|.||||+|+
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~----~Gadvn~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN----KGADIKSRTKEGTTLFFPLF 83 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH----TTCCSSCCCTTCCCTHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHH----CCCCCCCCCCCCCcHHHHHH
Confidence 568999999999999999998887766458999999999999811 1348888877 68899999999999999999
Q ss_pred HhCC------HHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCC-cHhHHHHHcC-----CHHHHHHHHh-cCCCC
Q 008102 84 KCGH------ASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKN-TALHEAMQHR-----SLDVVKILIK-EDPAV 150 (577)
Q Consensus 84 ~~g~------~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-t~Lh~A~~~g-----~~~~v~~Ll~-~~~~~ 150 (577)
..|+ .+++++|++.|++ ++.+|..|. ||||+|+..+ +.+++++|++ +|+++
T Consensus 84 ~~~~~~~~~~~~iv~~Ll~~Gad----------------in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~ 147 (186)
T 3t8k_A 84 QGGGNDITGTTELCKIFLEKGAD----------------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL 147 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCC----------------SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT
T ss_pred HcCCcchhhHHHHHHHHHHCCCC----------------CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC
Confidence 9987 6889999998877 567889999 9999999854 3567788887 67766
Q ss_pred CcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCC
Q 008102 151 PYSTNGCGETPLYMAAERGFEKMLTEILENCPS 183 (577)
Q Consensus 151 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 183 (577)
+ .+|..|.||||+|++.|+.+++++|.+...+
T Consensus 148 ~-~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~ 179 (186)
T 3t8k_A 148 L-IKDKWGLTALEFVKRCQKPIALKMMEDYIKK 179 (186)
T ss_dssp T-CCCTTSCCHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred c-ccCCCCCCHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 6777788888888888888888877766543
No 86
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.88 E-value=4.4e-23 Score=186.79 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=114.4
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCC-CCCCcHhHHHHHcCCH----HHHHHHHhcCCC
Q 008102 75 GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTN-DEKNTALHEAMQHRSL----DVVKILIKEDPA 149 (577)
Q Consensus 75 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~ 149 (577)
+.++|+.|++.|+.+.++.+++.+. +..+ ..|.||||+|+..|+. +++++|+++|++
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~------------------~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad 67 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY------------------EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS------------------SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc------------------ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC
Confidence 4567888888888888887776532 1223 5678888888888864 478888888877
Q ss_pred CCcCCCCCCChHHHHHHHhCC------HHHHHHHHHhCCCCCCCCCCCC-CHHHHHHHcC----CCHHHHHHHHh-hCCC
Q 008102 150 VPYSTNGCGETPLYMAAERGF------EKMLTEILENCPSVAHEGPSGK-TALHAAAVNI----NSIDVVKLLLD-KKKS 217 (577)
Q Consensus 150 ~~~~~~~~g~tpL~~A~~~g~------~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~~----~~~~~~~~Ll~-~~~~ 217 (577)
++ .+|..|.||||+|+..|+ .+++++|+++|++++.+|..|. ||||+|+..+ +..+++++|++ .+.+
T Consensus 68 vn-~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad 146 (186)
T 3t8k_A 68 IK-SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ 146 (186)
T ss_dssp SS-CCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC
T ss_pred CC-CCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC
Confidence 75 567778888888888776 5678888888888888888888 8888887741 23457777777 6666
Q ss_pred ccccCCCCCCcHHHHHHhcCcHHHHHHHhcCC
Q 008102 218 LIGETDRYGWTPLHYASYFDRNIIAELLLNSD 249 (577)
Q Consensus 218 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~ 249 (577)
++.+|..|.||||+|++.|+.+++++|.+..
T Consensus 147 -~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~ 177 (186)
T 3t8k_A 147 -LLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177 (186)
T ss_dssp -TTCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred -CcccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 6777777778888777777777777777643
No 87
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=5.4e-23 Score=195.44 Aligned_cols=171 Identities=16% Similarity=0.121 Sum_probs=140.8
Q ss_pred CCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccch
Q 008102 33 NNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVEST 112 (577)
Q Consensus 33 ~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~ 112 (577)
..+.+++.+++..|+ .+.+..+. ......+.+|.||||+|++.|+.++++.|++ +.+
T Consensus 13 ~~~~~~~l~~~~~g~---~~~~~~~~-------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~------------ 69 (244)
T 3ui2_A 13 GEGAMEYLIEWKDGH---SPSWVPSS-------YIAADVVSEYETPWWTAARKADEQALSQLLE-DRD------------ 69 (244)
T ss_dssp TTTEEEEEEEESSCC---CCEEEEGG-------GSCHHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCC------------
T ss_pred CCCccHHHHHHHcCC---Cccccccc-------ccccccccCCCCHHHHHHHcCCHHHHHHHHc-CCC------------
Confidence 367788899999998 44432221 1123345678999999999999999999998 544
Q ss_pred HHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCC
Q 008102 113 ARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGK 192 (577)
Q Consensus 113 ~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~ 192 (577)
++.+|..|.||||+|+..|+.+++++|++++++++...+..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus 70 ----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~ 145 (244)
T 3ui2_A 70 ----VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGL 145 (244)
T ss_dssp ----TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred ----CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence 4668899999999999999999999999999998755558899999999999999999999999999999999999
Q ss_pred CHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCC
Q 008102 193 TALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSD 249 (577)
Q Consensus 193 t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~ 249 (577)
||||+|+.. ++ ...+.||||+|+..|+.+++++|++..
T Consensus 146 t~l~~A~~~-~~------------------~~~~~~~l~~a~~~g~~~iv~~L~~~~ 183 (244)
T 3ui2_A 146 TALELAREI-LK------------------TTPKGNPMQFGRRIGLEKVINVLEGQV 183 (244)
T ss_dssp CHHHHHHHH-HT------------------TCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-Hh------------------ccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence 999999865 21 245778888888888888888888753
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.87 E-value=1.7e-21 Score=164.67 Aligned_cols=125 Identities=36% Similarity=0.561 Sum_probs=85.9
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcC
Q 008102 74 KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS 153 (577)
Q Consensus 74 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~ 153 (577)
+|.||||.|++.|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+.++. .
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~ 63 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD----------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-A 63 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCC----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-C
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCC----------------CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc-c
Confidence 366777777777777777777776544 34456667777777777777777777777666654 4
Q ss_pred CCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCC
Q 008102 154 TNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKK 216 (577)
Q Consensus 154 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~ 216 (577)
++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.. ++.+++++|++++.
T Consensus 64 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGA 125 (126)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHTC
T ss_pred cCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CcHHHHHHHHHcCC
Confidence 566677777777777777777777777777766666777777777776 67777777766654
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.87 E-value=7.6e-22 Score=169.43 Aligned_cols=122 Identities=25% Similarity=0.318 Sum_probs=61.2
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcC
Q 008102 74 KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS 153 (577)
Q Consensus 74 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~ 153 (577)
.+.||||.|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.+.+++ .
T Consensus 13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~ 75 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEVRILMANGAD----------------VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-A 75 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-C
T ss_pred cccHHHHHHHHhCCHHHHHHHHHcCCC----------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-c
Confidence 344555555555555555555554333 23344455555555555555555555555544443 3
Q ss_pred CCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHh
Q 008102 154 TNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLD 213 (577)
Q Consensus 154 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~ 213 (577)
.|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+++++|++
T Consensus 76 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~-~~~~~~~~Ll~ 134 (136)
T 2jab_A 76 VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGN-GNEDLAEILQK 134 (136)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHC-CCHHHHHHHHH
Confidence 444455555555555555555555555555555555555555555555 55555555444
No 90
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.87 E-value=2.3e-21 Score=163.76 Aligned_cols=126 Identities=34% Similarity=0.505 Sum_probs=101.9
Q ss_pred CCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcC
Q 008102 123 EKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNI 202 (577)
Q Consensus 123 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 202 (577)
+|.||||.|++.|+.+++++|++++.++. ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~- 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN- 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc-
Confidence 47788888888888888888888877765 5677788888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCC
Q 008102 203 NSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKS 251 (577)
Q Consensus 203 ~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 251 (577)
++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|++
T Consensus 79 ~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 79 GHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred ChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 888888888887776 577777788888888888888888888877653
No 91
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.87 E-value=1.6e-21 Score=167.46 Aligned_cols=127 Identities=25% Similarity=0.377 Sum_probs=110.9
Q ss_pred CCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Q 008102 120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAA 199 (577)
Q Consensus 120 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~ 199 (577)
....+.||||+|+..|+.+++++|++++.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 45567899999999999999999999988775 67788999999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCC
Q 008102 200 VNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSD 249 (577)
Q Consensus 200 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~ 249 (577)
.. ++.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.|
T Consensus 89 ~~-~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 FI-GHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HH-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred Hc-CCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99 899999999998877 6788888999999999999999999888764
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.86 E-value=7.5e-22 Score=178.83 Aligned_cols=142 Identities=19% Similarity=0.191 Sum_probs=125.0
Q ss_pred ccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCC
Q 008102 71 VNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAV 150 (577)
Q Consensus 71 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~ 150 (577)
.+..|.||||+|+..|+.++++.|++ +.+ ++.+|..|.||||+|+..|+.+++++|+++++++
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~----------------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 102 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRD----------------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 102 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSC----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCC----------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 45678999999999999999999998 544 4668899999999999999999999999999988
Q ss_pred CcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHH
Q 008102 151 PYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPL 230 (577)
Q Consensus 151 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL 230 (577)
+...+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. ++ ...+.+||
T Consensus 103 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~-~~------------------~~~~~~~l 163 (183)
T 3deo_A 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI-LK------------------TTPKGNPM 163 (183)
T ss_dssp TCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH-HH------------------TCCCCSHH
T ss_pred CcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHh-cc------------------CcccccHH
Confidence 755558899999999999999999999999999999999999999999876 21 13467899
Q ss_pred HHHHhcCcHHHHHHHhcC
Q 008102 231 HYASYFDRNIIAELLLNS 248 (577)
Q Consensus 231 ~~A~~~g~~~~v~~Ll~~ 248 (577)
++|+..|+.+++++|.++
T Consensus 164 ~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 164 QFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCHHHHHHHHHHh
Confidence 999999999999998764
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.84 E-value=1.2e-21 Score=168.33 Aligned_cols=124 Identities=27% Similarity=0.337 Sum_probs=57.4
Q ss_pred CCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHH
Q 008102 121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAV 200 (577)
Q Consensus 121 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~ 200 (577)
|.+|.||||+|+..|+.+++++|++.+.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 85 (137)
T 3c5r_A 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPN-VKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK 85 (137)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHH
Confidence 4444444444444444444444444444332 334444444444444444444444444444444444444444444444
Q ss_pred cCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhc
Q 008102 201 NINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLN 247 (577)
Q Consensus 201 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~ 247 (577)
. ++.+++++|++.+.+ ++..|..|.||||+|+..+..+++++|.+
T Consensus 86 ~-~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~l~~l~~ 130 (137)
T 3c5r_A 86 N-GHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEK 130 (137)
T ss_dssp T-TCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred c-CCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence 4 444444444444444 34444444555554444444444444443
No 94
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.84 E-value=5.5e-21 Score=173.07 Aligned_cols=140 Identities=24% Similarity=0.263 Sum_probs=125.9
Q ss_pred CCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCC-CCCCCHHHHHH
Q 008102 121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEG-PSGKTALHAAA 199 (577)
Q Consensus 121 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~ 199 (577)
+.+|.||||+|++.|+.++++.|++ +.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~ 118 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 4568899999999999999999999 76665 688899999999999999999999999999999888 88999999999
Q ss_pred HcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHH
Q 008102 200 VNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEE 279 (577)
Q Consensus 200 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~ 279 (577)
.. ++.+++++|++.+.+ ++.+|..|.||||+|++.++. ..+.+||++|+..|..++++.
T Consensus 119 ~~-~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~-------------------~~~~~~l~~a~~~~~~~i~~~ 177 (183)
T 3deo_A 119 GY-VRPEVVEALVELGAD-IEVEDERGLTALELAREILKT-------------------TPKGNPMQFGRRIGLEKVINV 177 (183)
T ss_dssp HT-TCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHT-------------------CCCCSHHHHHHHHHHHHHHHH
T ss_pred hc-CcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccC-------------------cccccHHHHHHHcCHHHHHHH
Confidence 99 999999999999988 788999999999999875432 256789999999999999999
Q ss_pred HHhh
Q 008102 280 IISY 283 (577)
Q Consensus 280 Ll~~ 283 (577)
|.++
T Consensus 178 L~~~ 181 (183)
T 3deo_A 178 LEGQ 181 (183)
T ss_dssp HHTC
T ss_pred HHHh
Confidence 8764
No 95
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.84 E-value=4.1e-21 Score=165.05 Aligned_cols=130 Identities=25% Similarity=0.194 Sum_probs=116.6
Q ss_pred CCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHH
Q 008102 153 STNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHY 232 (577)
Q Consensus 153 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~ 232 (577)
.+|..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++++|++.+.+ ++..|..|.||||+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~ 82 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKVVELLLQHKAL-VNTTGYQNDSPLHD 82 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCGGGCCHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCc-ccCcCCCCCCHHHH
Confidence 5788899999999999999999999999999999999999999999999 999999999999887 78899999999999
Q ss_pred HHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCc
Q 008102 233 ASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPE 286 (577)
Q Consensus 233 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 286 (577)
|+..|+.+++++|++.+++++ ..+..|.||+|+|+..+..++++++.+....
T Consensus 83 A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s 134 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSYGASRN--AVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134 (137)
T ss_dssp HHHTTCHHHHHHHHHTTCCTT--CCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred HHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence 999999999999999998875 4455899999999999999999888776544
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.84 E-value=6.8e-21 Score=180.91 Aligned_cols=143 Identities=24% Similarity=0.257 Sum_probs=125.1
Q ss_pred CCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCC-CCCCCHHHHHH
Q 008102 121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEG-PSGKTALHAAA 199 (577)
Q Consensus 121 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~ 199 (577)
+.+|.||||+|++.|+.++++.|++ +.+++ .+|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~ 119 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 119 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 3568899999999999999999999 76665 688889999999999999999999999999999888 78999999999
Q ss_pred HcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHH
Q 008102 200 VNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEE 279 (577)
Q Consensus 200 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~ 279 (577)
.. ++.+++++|++.+.+ ++..|..|.||||+|+..++ ...+.+|||+|+..|+.+++++
T Consensus 120 ~~-g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~~-------------------~~~~~~~l~~a~~~g~~~iv~~ 178 (244)
T 3ui2_A 120 GY-VRPEVVEALVELGAD-IEVEDERGLTALELAREILK-------------------TTPKGNPMQFGRRIGLEKVINV 178 (244)
T ss_dssp HT-TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHHT-------------------TCCCSSHHHHHHHHHHHHHHHH
T ss_pred Hc-CCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHHh-------------------ccCCCCHHHHHHHcChHHHHHH
Confidence 99 999999999999888 78899999999999986321 1257789999998888888888
Q ss_pred HHhhCCc
Q 008102 280 IISYCPE 286 (577)
Q Consensus 280 Ll~~~~~ 286 (577)
|+++..+
T Consensus 179 L~~~~~~ 185 (244)
T 3ui2_A 179 LEGQVFE 185 (244)
T ss_dssp HHHHHEE
T ss_pred HHHhccc
Confidence 8876544
No 97
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.83 E-value=7.9e-20 Score=178.75 Aligned_cols=149 Identities=19% Similarity=0.125 Sum_probs=119.8
Q ss_pred cCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHc---CCHHHHHHHHhcCC
Q 008102 72 NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH---RSLDVVKILIKEDP 148 (577)
Q Consensus 72 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~ 148 (577)
.....++||.|+..|+.+.++.|++.+.+.+.... -...+..|.||||+|+.. |+.+++++|+++++
T Consensus 148 ~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~----------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga 217 (301)
T 2b0o_E 148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLP----------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG 217 (301)
T ss_dssp CC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEE----------CSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSS
T ss_pred cCchHHHHhhhhhccCHHHHHHHHhcCCcccccCC----------CcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCC
Confidence 33455789999999999999999987766321100 001588899999999997 89999999999998
Q ss_pred CCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCc
Q 008102 149 AVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWT 228 (577)
Q Consensus 149 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t 228 (577)
+++ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. ++.+++++|++.+.+ .|.|
T Consensus 218 dvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~-~~~~iv~~Ll~~ga~-------~g~t 288 (301)
T 2b0o_E 218 HLD-AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK-HHKECEELLEQAQAG-------TFAF 288 (301)
T ss_dssp CTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHH-TCHHHHHHHHHHHHH-------TTSS
T ss_pred CCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHhcCC-------CCCC
Confidence 876 6788899999999999999999999999999999999999999999999 999999999998765 4789
Q ss_pred HHHHHHhcCcH
Q 008102 229 PLHYASYFDRN 239 (577)
Q Consensus 229 pL~~A~~~g~~ 239 (577)
|||+|+.+|+.
T Consensus 289 pLh~A~~~g~~ 299 (301)
T 2b0o_E 289 PLHVDYSWVIS 299 (301)
T ss_dssp CCC--------
T ss_pred hhHHHHhcCCc
Confidence 99999887763
No 98
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.83 E-value=1.3e-20 Score=158.52 Aligned_cols=109 Identities=21% Similarity=0.281 Sum_probs=60.5
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCc
Q 008102 73 AKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPY 152 (577)
Q Consensus 73 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~ 152 (577)
..|.||||.|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.+.+++
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~- 67 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGED----------------VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN- 67 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCC----------------TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT-
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCC----------------cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-
Confidence 3445556666666666666655554433 23445555566666665555555655555555543
Q ss_pred CCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Q 008102 153 STNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAA 198 (577)
Q Consensus 153 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A 198 (577)
.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus 68 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 68 APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence 4455555555555555555555555555555555555555555555
No 99
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.82 E-value=3.6e-20 Score=181.18 Aligned_cols=138 Identities=24% Similarity=0.210 Sum_probs=82.2
Q ss_pred cHhHHHHHcCCHHHHHHHHhcCCCCCcC-----CCCCCChHHHHHHHh---CCHHHHHHHHHhCCCCCCCCCCCCCHHHH
Q 008102 126 TALHEAMQHRSLDVVKILIKEDPAVPYS-----TNGCGETPLYMAAER---GFEKMLTEILENCPSVAHEGPSGKTALHA 197 (577)
Q Consensus 126 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~ 197 (577)
++|+.|+..|+.+.++.|++.+++++.. .+..|.||||+|+.. |+.+++++|+++|++++..|..|.||||+
T Consensus 153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~ 232 (301)
T 2b0o_E 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 232 (301)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHH
T ss_pred HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 4566666666666666666666655432 455666666666665 56666666666666666666666666666
Q ss_pred HHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCc
Q 008102 198 AAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGK 273 (577)
Q Consensus 198 A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~ 273 (577)
|+.. ++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+++ .|.||||+|+..|+
T Consensus 233 A~~~-g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 233 AALY-NQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG--------TFAFPLHVDYSWVI 298 (301)
T ss_dssp HHHT-TCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------TTSSCCC-------
T ss_pred HHHc-CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------CCCChhHHHHhcCC
Confidence 6666 666666666666655 456666666666666666666666666665432 34566666665554
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.82 E-value=4.5e-20 Score=155.29 Aligned_cols=115 Identities=23% Similarity=0.203 Sum_probs=96.6
Q ss_pred CCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHH
Q 008102 121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAV 200 (577)
Q Consensus 121 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~ 200 (577)
+..|.||||+|+..|+.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~ 82 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY 82 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTT-SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence 4567889999999999999999999888765 677789999999999999999999999999988888899999999998
Q ss_pred cCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCc
Q 008102 201 NINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDR 238 (577)
Q Consensus 201 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~ 238 (577)
. ++.+++++|++.+.+ ++.+|..|.||||+|...+.
T Consensus 83 ~-~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~ 118 (123)
T 3aaa_C 83 E-GHVSCVKLLLSKGAD-KTVKGPDGLTAFEATDNQAI 118 (123)
T ss_dssp H-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCCHHH
T ss_pred c-CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHhCCHHH
Confidence 8 889999999988877 67888888888888854433
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.82 E-value=1.2e-20 Score=176.70 Aligned_cols=130 Identities=22% Similarity=0.224 Sum_probs=88.7
Q ss_pred cccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhc-CC
Q 008102 70 SVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKE-DP 148 (577)
Q Consensus 70 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~ 148 (577)
..+..|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++. +.
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~ 131 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVG----------------VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNI 131 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTC
T ss_pred ccccccccccccccccCcHHHHHHHHhCCCC----------------ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCC
Confidence 3455677777777777777777777776544 355677777777777777777777777777 55
Q ss_pred CCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCC
Q 008102 149 AVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKS 217 (577)
Q Consensus 149 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~ 217 (577)
+++ ..|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.. +..++++.|++.+..
T Consensus 132 ~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~-~~~~~l~~l~~~~~~ 198 (222)
T 3ehr_A 132 ELN-QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNA-ACASLLKKKQGTDAV 198 (222)
T ss_dssp CCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSH-HHHHHHC--------
T ss_pred Ccc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcch-hHHHHHHHHhccchh
Confidence 543 5667777777777777777777777777777777777777777777776 777777777766554
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.80 E-value=8.9e-20 Score=170.66 Aligned_cols=132 Identities=21% Similarity=0.256 Sum_probs=114.1
Q ss_pred cCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHh-CCCCCCCCCCCCCHHHH
Q 008102 119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILEN-CPSVAHEGPSGKTALHA 197 (577)
Q Consensus 119 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~ 197 (577)
..+..|.||||+|+..|+.++++.|++.+.+++ ..|..|.||||+|+..|+.+++++|++. |++++..+..|.||||+
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~ 146 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA 146 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHH
T ss_pred ccccccccccccccccCcHHHHHHHHhCCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHH
Confidence 356789999999999999999999999998875 6788899999999999999999999999 89999999999999999
Q ss_pred HHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCcc
Q 008102 198 AAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLA 253 (577)
Q Consensus 198 A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~ 253 (577)
|+.. ++.+++++|++.+.+ ++.+|..|.||||+|+..++.++++.|++.++...
T Consensus 147 A~~~-~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~ 200 (222)
T 3ehr_A 147 AAWK-GYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT 200 (222)
T ss_dssp HHHH-TCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC----------
T ss_pred HHHc-CCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence 9999 999999999999888 78899999999999999999999999999877653
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.78 E-value=4.2e-18 Score=164.53 Aligned_cols=233 Identities=18% Similarity=0.180 Sum_probs=146.7
Q ss_pred cHHHHHhhhhcCCc-cccCCCCccceeeeecCCccchHHHHHHHHHHhhCcccc--ccccCCCCcHHHHHHHhCCHHHHH
Q 008102 16 IEPFKEISNVLGRV-VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLL--QSVNAKGDAPLHVAAKCGHASVVT 92 (577)
Q Consensus 16 ~~~v~~Ll~~~~~~-~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~--~~~~~~g~t~Lh~A~~~g~~~iv~ 92 (577)
.++++.|.+...+. ..+.....|=...+..|-.-+.+|...-..+ ...-..+ -..|..+.+.++.+...|+..+.+
T Consensus 5 ~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~l-g~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~ 83 (278)
T 1dcq_A 5 KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHREL-GVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNE 83 (278)
T ss_dssp HHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHH-CTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHH
T ss_pred HHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhc-CCCcceeeeeecCCCCHHHHHHHHHcCcHHHHH
Confidence 34566666654333 2221223443333344552334555444332 1111212 135677889999999999987766
Q ss_pred HHHHHHHcCCc-hhhcccc-chHHHhh------ccCC-------CCCCcHhHHHHHcCCHHHHHHHHhcCCCCCc-----
Q 008102 93 ALIEIAKKQPK-ELESGVE-STARQML------GMTN-------DEKNTALHEAMQHRSLDVVKILIKEDPAVPY----- 152 (577)
Q Consensus 93 ~Ll~~~~~~~~-~~~~~~~-~~~~~~l------~~~~-------~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~----- 152 (577)
++-........ ....... ......+ .... ....++|+.|+..|+.+.++.+++.+.++..
T Consensus 84 i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~ 163 (278)
T 1dcq_A 84 IMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLA 163 (278)
T ss_dssp HHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCS
T ss_pred HHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhcccc
Confidence 65432111100 0000000 0001111 1001 1123578888888888888888888877532
Q ss_pred CCCCCCChHHHHHHHh---CCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcH
Q 008102 153 STNGCGETPLYMAAER---GFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTP 229 (577)
Q Consensus 153 ~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tp 229 (577)
..+..|.||||+|+.. |+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|++.+.+ ++.+|..|.||
T Consensus 164 ~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~gad-~~~~d~~g~tp 241 (278)
T 1dcq_A 164 NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT-DNAECLKLLLRGKAS-IEIANESGETP 241 (278)
T ss_dssp SCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred ccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC-CCCccCCCCCH
Confidence 3367788888888888 788888888888888888888888888888888 888888888888877 67888888888
Q ss_pred HHHHHhcCcHHHHHHHhcCCCC
Q 008102 230 LHYASYFDRNIIAELLLNSDKS 251 (577)
Q Consensus 230 L~~A~~~g~~~~v~~Ll~~~~~ 251 (577)
||+|+..|+.+++++|++.+++
T Consensus 242 L~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 242 LDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCC
Confidence 8888888888888888887653
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.78 E-value=3.7e-19 Score=172.01 Aligned_cols=124 Identities=21% Similarity=0.199 Sum_probs=71.8
Q ss_pred cHHHHHHhcCcHHHHHHHhcCCCCccch----hcCCCCCcchhHhhhc---CcHHHHHHHHhhCCcccccccCCCCchhh
Q 008102 228 TPLHYASYFDRNIIAELLLNSDKSLAYI----VDNDRKMTALHLAAGQ---GKLRVVEEIISYCPECCELVDGRGWNVLH 300 (577)
Q Consensus 228 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~----~~~~~g~tpL~~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh 300 (577)
++|+.|+..|+.+.++.+++.+.+.... ..+..|.||||+|+.. |+.+++++|++++++ ++.+|..|+||||
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpLh 210 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALH 210 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHH
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHHH
Confidence 4556666666666666666655553211 1123456666666665 566666666666665 5556666666666
Q ss_pred HHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCccc
Q 008102 301 FAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGG 357 (577)
Q Consensus 301 ~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~ 357 (577)
+|+..|+.+++++|+++ |+++|.+|.+|+||||+|+..+ ...+.++|+++|+
T Consensus 211 ~A~~~g~~~~v~~Ll~~----gad~~~~d~~g~tpL~~A~~~~-~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 211 YCCLTDNAECLKLLLRG----KASIEIANESGETPLDIAKRLK-HEHCEELLTQALS 262 (278)
T ss_dssp HHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHc----CCCCCCccCCCCCHHHHHHHcC-CHHHHHHHHHcCC
Confidence 66666666666666665 6666666666666666666665 3444455554443
No 105
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.77 E-value=1.7e-18 Score=137.58 Aligned_cols=91 Identities=34% Similarity=0.546 Sum_probs=55.0
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCC
Q 008102 75 GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYST 154 (577)
Q Consensus 75 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~ 154 (577)
|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++++++++ .+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~ 64 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGAD----------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AK 64 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CC
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCC----------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cc
Confidence 55666666666666666666665443 34455666666666666666666666666665554 45
Q ss_pred CCCCChHHHHHHHhCCHHHHHHHHHhCC
Q 008102 155 NGCGETPLYMAAERGFEKMLTEILENCP 182 (577)
Q Consensus 155 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 182 (577)
|..|.||||+|+..|+.+++++|+++|+
T Consensus 65 d~~g~t~l~~A~~~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 65 DKNGRTPLHLAARNGHLEVVKLLLEAGA 92 (93)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 5556666666666666666666666554
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.76 E-value=2.3e-18 Score=172.19 Aligned_cols=125 Identities=23% Similarity=0.252 Sum_probs=77.7
Q ss_pred CCCCcHhHHHHHc-CCHHHHHHHHhcCCCCCcCCC--CCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Q 008102 122 DEKNTALHEAMQH-RSLDVVKILIKEDPAVPYSTN--GCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAA 198 (577)
Q Consensus 122 ~~g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~~--~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A 198 (577)
..+.|+||.|+.. |+.++++.|+++|.+++. .+ ..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~-~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A 275 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHGADVNW-VNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA 275 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTC-CCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCc-cccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 3455666666666 666666666666665542 33 5566666666666666666666666666666666666666666
Q ss_pred HHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCC
Q 008102 199 AVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSD 249 (577)
Q Consensus 199 ~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~ 249 (577)
+.. ++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+
T Consensus 276 ~~~-g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~ 324 (368)
T 3jue_A 276 TIL-GHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAK 324 (368)
T ss_dssp HHH-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHc-CcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 666 666666666666655 4566666666666666666666666666543
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.75 E-value=7.9e-18 Score=133.72 Aligned_cols=91 Identities=36% Similarity=0.530 Sum_probs=63.0
Q ss_pred CCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCC
Q 008102 124 KNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNIN 203 (577)
Q Consensus 124 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~ 203 (577)
|+||||+|+..|+.+++++|++.+.+++ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. +
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~-~ 79 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-G 79 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-T
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-C
Confidence 6677777777777777777777766654 5566677777777777777777777777777777777777777777776 6
Q ss_pred CHHHHHHHHhhCC
Q 008102 204 SIDVVKLLLDKKK 216 (577)
Q Consensus 204 ~~~~~~~Ll~~~~ 216 (577)
+.+++++|++.+.
T Consensus 80 ~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 80 HLEVVKLLLEAGA 92 (93)
T ss_dssp CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCC
Confidence 7777777766553
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.75 E-value=1.3e-17 Score=175.14 Aligned_cols=144 Identities=20% Similarity=0.151 Sum_probs=116.0
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHH---cCCHHHHHHHHhcCCCC
Q 008102 74 KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQ---HRSLDVVKILIKEDPAV 150 (577)
Q Consensus 74 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~---~g~~~~v~~Ll~~~~~~ 150 (577)
...+.||.|+..|+.+.|+.|++.|++.+.... ....|..|.||||+|++ .|+.+++++|+++|+++
T Consensus 131 ~~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~----------~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v 200 (497)
T 3lvq_E 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLP----------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL 200 (497)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBC----------CSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT
T ss_pred ccHHHHHHHHhccCHHHHHHHHhhcccccCCCC----------CcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC
Confidence 344789999999999999999999876432100 11237889999999977 89999999999999988
Q ss_pred CcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHH
Q 008102 151 PYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPL 230 (577)
Q Consensus 151 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL 230 (577)
+ .+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.. ++.+++++|++.+.+. + .+|+
T Consensus 201 n-~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~-~~~~~~~~Ll~~ga~~-~------~~~~ 271 (497)
T 3lvq_E 201 D-AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK-HHKECEELLEQAQAGT-F------AFPL 271 (497)
T ss_dssp T-CCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHT-TCHHHHHHHHHTCC--------------
T ss_pred C-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHhCCCC-C------CCcc
Confidence 6 7888999999999999999999999999999999999999999999999 9999999999998873 2 2688
Q ss_pred HHHHhc
Q 008102 231 HYASYF 236 (577)
Q Consensus 231 ~~A~~~ 236 (577)
|.+..+
T Consensus 272 h~~~~~ 277 (497)
T 3lvq_E 272 HVDYSW 277 (497)
T ss_dssp ------
T ss_pred eeeccc
Confidence 876554
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.74 E-value=1.1e-17 Score=175.75 Aligned_cols=137 Identities=24% Similarity=0.240 Sum_probs=115.7
Q ss_pred CCcHhHHHHHcCCHHHHHHHHhcCCCCCcC-----CCCCCChHHHHHHH---hCCHHHHHHHHHhCCCCCCCCCCCCCHH
Q 008102 124 KNTALHEAMQHRSLDVVKILIKEDPAVPYS-----TNGCGETPLYMAAE---RGFEKMLTEILENCPSVAHEGPSGKTAL 195 (577)
Q Consensus 124 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~---~g~~~~v~~Ll~~~~~~~~~~~~g~t~L 195 (577)
..+.||.|+..|+.+.++.|++.|++++.. .+..|.||||+|+. .|+.+++++|+++|++++.+|..|.|||
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpL 211 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 211 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHH
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHH
Confidence 346799999999999999999999887633 37789999999976 8999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhh
Q 008102 196 HAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAG 270 (577)
Q Consensus 196 ~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~ 270 (577)
|+|+.. |+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++. .+|+|.+..
T Consensus 212 h~A~~~-g~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~--------~~~~h~~~~ 276 (497)
T 3lvq_E 212 HYAALY-NQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAGTF--------AFPLHVDYS 276 (497)
T ss_dssp HHHTTT-TCHHHHHHHHHTCCC-CSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC--------------------
T ss_pred HHHHHc-CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC--------CCcceeecc
Confidence 999999 999999999999988 78999999999999999999999999999998764 267777654
No 110
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.74 E-value=9.1e-18 Score=167.85 Aligned_cols=148 Identities=17% Similarity=0.138 Sum_probs=117.4
Q ss_pred CCCCCChHHHHHHHh-CCHHHHHHHHHhCCCCCCCC--CCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHH
Q 008102 154 TNGCGETPLYMAAER-GFEKMLTEILENCPSVAHEG--PSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPL 230 (577)
Q Consensus 154 ~~~~g~tpL~~A~~~-g~~~~v~~Ll~~~~~~~~~~--~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL 230 (577)
.+..+.|+||.|+.. |+.++++.|+++|++++..+ ..|.||||+|+.. ++.+++++|++.+.+ ++..|..|+|||
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~-g~~~iv~~LL~~Gad-vn~~d~~G~TpL 272 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAA-NSLLACEFLLQNGAN-VNQADSAGRGPL 272 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHC-CCHHHHHHHHHcCCC-CCCCCCCCCCHH
Confidence 444578999999999 99999999999999999888 8999999999999 999999999999988 789999999999
Q ss_pred HHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcc--cccccCCCCchhhHHHhc
Q 008102 231 HYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPEC--CELVDGRGWNVLHFAMVS 305 (577)
Q Consensus 231 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~--~~~~d~~g~t~Lh~A~~~ 305 (577)
|+|+..|+.+++++|++++++++ ..+..|.||||+|+..|+.+++++|+..+... ....+..+.|+++.+...
T Consensus 273 h~A~~~g~~~~v~~LL~~Gad~~--~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 273 HHATILGHTGLACLFLKRGADLG--ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHHHHcCcHHHHHHHHHCcCCCC--CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 99999999999999999999885 34558999999999999999999999876442 224566788999887654
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.74 E-value=1.9e-18 Score=143.34 Aligned_cols=104 Identities=26% Similarity=0.204 Sum_probs=74.7
Q ss_pred CCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHH
Q 008102 260 RKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLL 339 (577)
Q Consensus 260 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A 339 (577)
.|.||||+|+..|+.+++++|++++++ ++..|..|+||||+|+..++.+++++|+++ |++++.+|.+|+||||+|
T Consensus 8 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 8 DGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAK----GADVNARSKDGNTPEHLA 82 (115)
T ss_dssp SSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTT----TCCTTCCCTTCCCTTHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc----CCCCcccCCCCCCHHHHH
Confidence 567777777777777777777777666 566677777777777777777777777776 777777777777777777
Q ss_pred HHhCCccceeccccCcccchhhhhhCCCCh
Q 008102 340 AALCRDSFHRIVPWNVGGDYQAVNKQNISV 369 (577)
Q Consensus 340 ~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~ 369 (577)
+..+ ...+.++|+++|+|+|.++..|.||
T Consensus 83 ~~~~-~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 83 KKNG-HHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp HTTT-CHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred HHCC-CHHHHHHHHHcCCCCCcCCcccccc
Confidence 7776 4555666677777777777777776
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.71 E-value=1.4e-17 Score=138.00 Aligned_cols=108 Identities=26% Similarity=0.334 Sum_probs=75.5
Q ss_pred cCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Q 008102 119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAA 198 (577)
Q Consensus 119 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A 198 (577)
.+|.+|.||||+|+..|+.+++++|++++.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA 82 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 356677777777777777777777777776654 5566677777777777777777777777777777777777777777
Q ss_pred HHcCCCHHHHHHHHhhCCCccccCCCCCCcH
Q 008102 199 AVNINSIDVVKLLLDKKKSLIGETDRYGWTP 229 (577)
Q Consensus 199 ~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tp 229 (577)
+.. ++.+++++|++.+.+ ++..+..|.+|
T Consensus 83 ~~~-~~~~~~~~Ll~~ga~-~n~~~~~~~~~ 111 (115)
T 2l6b_A 83 KKN-GHHEIVKLLDAKGAD-VNARSWGSSHH 111 (115)
T ss_dssp HTT-TCHHHHHHHHTTSSS-HHHHSCCCC--
T ss_pred HHC-CCHHHHHHHHHcCCC-CCcCCcccccc
Confidence 777 777777777777666 56666666655
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.62 E-value=9e-16 Score=125.91 Aligned_cols=89 Identities=27% Similarity=0.365 Sum_probs=40.9
Q ss_pred CCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Q 008102 120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAA 199 (577)
Q Consensus 120 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~ 199 (577)
.|.+|.||||+|+..|+.+++++|++.+.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~ 98 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI 98 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHH
Confidence 34444444444444444444444444444332 33444444444444444444444444444444444444444444444
Q ss_pred HcCCCHHHHHH
Q 008102 200 VNINSIDVVKL 210 (577)
Q Consensus 200 ~~~~~~~~~~~ 210 (577)
.. ++.+++++
T Consensus 99 ~~-~~~~~~~~ 108 (110)
T 2zgd_A 99 DN-GNEDLAEI 108 (110)
T ss_dssp HH-TCHHHHHH
T ss_pred Hc-CCHHHHHH
Confidence 44 44444443
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.61 E-value=2.2e-15 Score=123.56 Aligned_cols=93 Identities=28% Similarity=0.345 Sum_probs=84.9
Q ss_pred CcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHH
Q 008102 151 PYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPL 230 (577)
Q Consensus 151 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL 230 (577)
....+.+|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+.. ++.+++++|++.+.+ ++..|..|.|||
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~-~~~~~v~~Ll~~ga~-~~~~d~~g~tpl 94 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARN-GHLEVVKLLLEAGAD-VXAQDKFGKTAF 94 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC-ccccccCCCcHH
Confidence 345678899999999999999999999999999999999999999999999 999999999999887 788999999999
Q ss_pred HHHHhcCcHHHHHHH
Q 008102 231 HYASYFDRNIIAELL 245 (577)
Q Consensus 231 ~~A~~~g~~~~v~~L 245 (577)
|+|+..|+.+++++|
T Consensus 95 ~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 95 DISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHh
Confidence 999999999999987
No 115
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=70.22 E-value=53 Score=28.35 Aligned_cols=22 Identities=23% Similarity=0.461 Sum_probs=14.2
Q ss_pred cchhHHHHhHHHHHHHHHHHHH
Q 008102 472 AFQAFVISDAIAMALSLSAVFV 493 (577)
Q Consensus 472 ~f~~F~~~~~~a~~~s~~~~~~ 493 (577)
-+-+|-++-++-+..-+.++++
T Consensus 59 LLi~fav~Ttllv~vml~AlMI 80 (214)
T 4hkr_A 59 MLIAFAICTTLLVAVHMLALMI 80 (214)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777777766666666555
No 116
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=47.91 E-value=70 Score=30.51 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHh
Q 008102 514 FFTLVAMAAMMVAFVTGAYAM 534 (577)
Q Consensus 514 ~~~~~~~~~m~~af~~~~~~~ 534 (577)
.+..++++++..+|++|+|-|
T Consensus 281 ~LTiit~IflP~T~IaGiyGM 301 (339)
T 4ev6_A 281 ILTMVTTIFAVPMWITGIYGM 301 (339)
T ss_dssp HHHHHHHHSSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhhccC
Confidence 355577888999999999965
No 117
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=44.97 E-value=7.5 Score=23.35 Aligned_cols=21 Identities=24% Similarity=0.545 Sum_probs=16.3
Q ss_pred CHHHHHHHHcCCcHHHHHhhh
Q 008102 4 DPLLYEAAAKGEIEPFKEISN 24 (577)
Q Consensus 4 ~~~L~~Aa~~g~~~~v~~Ll~ 24 (577)
+..++.|+..||.+.++.|-.
T Consensus 14 EQqiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 14 RKQMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHH
Confidence 457788888898888887743
No 118
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=31.75 E-value=70 Score=30.89 Aligned_cols=27 Identities=26% Similarity=0.446 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHh----ccCccc
Q 008102 514 FFTLVAMAAMMVAFVTGAYAM----LEPSLG 540 (577)
Q Consensus 514 ~~~~~~~~~m~~af~~~~~~~----~~~~~~ 540 (577)
.+..+|+++|..+|++|+|-| +|...|
T Consensus 305 ~LTiit~IflP~T~IaGiyGMNf~~mPel~~ 335 (363)
T 2iub_A 305 VLTIIATIFMPLTFIAGIYGMNFEYMPELRW 335 (363)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----------
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCcccC
Confidence 455577888999999999854 565444
No 119
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=29.59 E-value=69 Score=20.13 Aligned_cols=28 Identities=18% Similarity=0.314 Sum_probs=15.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 008102 541 LAIVTCIIGLSFFVLVIFMFYKVLSKAD 568 (577)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (577)
.+|+..+++.++.++++..+..++.|+.
T Consensus 11 ~~IA~gVVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 11 PSIATGMVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ceEEeehhHHHHHHHHHHHHHHHHhhhh
Confidence 3677777765555555555444444443
No 120
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=27.07 E-value=1.2e+02 Score=19.02 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=15.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008102 541 LAIVTCIIGLSFFVLVIFMFYKVLSKADE 569 (577)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (577)
.+|...+++.++.++++..+..++.|+++
T Consensus 10 ~aIA~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 36667777655554454444444444443
No 121
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=25.49 E-value=1.3e+02 Score=18.91 Aligned_cols=26 Identities=15% Similarity=0.484 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhh
Q 008102 542 AIVTCIIGLSFFVLVIFMFYKVLSKA 567 (577)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (577)
.++..++|+..++++...+..+.+|+
T Consensus 13 ~Ia~~vVGvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 13 SIISAVVGILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhheehh
Confidence 45555666444444444444444443
No 122
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=24.20 E-value=77 Score=30.37 Aligned_cols=97 Identities=14% Similarity=0.070 Sum_probs=50.5
Q ss_pred cccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhc-CC
Q 008102 70 SVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKE-DP 148 (577)
Q Consensus 70 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~ 148 (577)
..|..|...+.-....++.+....+++.....- .+ -..+..|...+..+......+-...+++. .+
T Consensus 68 ~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~-----------~~--l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~ 134 (351)
T 3gvo_A 68 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHV-----------LP--LALQMYGCRVIQKALESISSDQQSEMVKELDG 134 (351)
T ss_dssp HTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCH-----------HH--HHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTT
T ss_pred HhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhH-----------HH--HhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhh
Confidence 356777777777777777777666666532210 00 12456666667666666665544444443 11
Q ss_pred C-CCcCCCCCCChHHHHHHHhCCHHHHHHHHH
Q 008102 149 A-VPYSTNGCGETPLYMAAERGFEKMLTEILE 179 (577)
Q Consensus 149 ~-~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 179 (577)
. .....|..|...+....+.+.++..+.+++
T Consensus 135 ~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~ 166 (351)
T 3gvo_A 135 HVLKCVKDQNGNHVVQKCIECVQPQSLQFIID 166 (351)
T ss_dssp CHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHH
T ss_pred hHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHH
Confidence 1 111234445555555555444444444443
No 123
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=21.17 E-value=80 Score=30.22 Aligned_cols=95 Identities=14% Similarity=0.087 Sum_probs=57.1
Q ss_pred cCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhc--CCC
Q 008102 72 NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKE--DPA 149 (577)
Q Consensus 72 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~--~~~ 149 (577)
|..|.-.|......++.+-.+.+.+..... ..--..|..|+..+.-....++.+....+++. +.-
T Consensus 34 dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~-------------~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~ 100 (351)
T 3gvo_A 34 DQHGSRFIQQKLERATPAERQIVFNEILQA-------------AYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHV 100 (351)
T ss_dssp SHHHHHHHHHHHHHCCHHHHHHHHHHHGGG-------------HHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCH
T ss_pred CCcchHHHHHHHhhCCHHHHHHHHHHHHHh-------------HHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhH
Confidence 334444555555566666556555543221 11124688899888888888888877777764 222
Q ss_pred CCcCCCCCCChHHHHHHHhCCHHHHHHHHH
Q 008102 150 VPYSTNGCGETPLYMAAERGFEKMLTEILE 179 (577)
Q Consensus 150 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 179 (577)
.....+..|.-.+..+......+-...+++
T Consensus 101 ~~l~~~~~G~rvvQk~le~~~~~~~~~i~~ 130 (351)
T 3gvo_A 101 LPLALQMYGCRVIQKALESISSDQQSEMVK 130 (351)
T ss_dssp HHHHTSTTHHHHHHHHHHHSCHHHHHHHHG
T ss_pred HHHhhCHHhHHHHHHHHHhCCHHHHHHHHH
Confidence 223456667777777777776655555554
No 124
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=20.22 E-value=2.2e+02 Score=31.94 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 008102 549 GLSFFVLVIFMFYKVLSK 566 (577)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~ 566 (577)
+.++.++++.-++|+..|
T Consensus 1004 ~~~~~~~~~~e~~K~~~r 1021 (1034)
T 3ixz_A 1004 PFGLLIFVYDEIRKLGVR 1021 (1034)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444556666776654
Done!