Citrus Sinensis ID: 008103

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------
Protein Sequence
MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQTNQSGDILCLGGSGSRSTPFDHLLSPSMGSSSSSFRPPQSLASTPFFMQESNQNYHEEQQQHQQGLLPNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSNSSSTNSLSNSNSNNNNNNASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNLFTNNLISDHQISSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSSNNNTASLLRSFGGSSSSSGSKPNNNNNNFGGAGNVFGGPGSSENDNSSSIHDLMNPFAATNSSIFGTGSNDQVNAFSGQDQNHHRRHHHHHPNYEAKLHHNMNAGMGGSDRMTRDFLGVGQIVRSVSGGFQQREKQQQQHGGVIDVSSLDSERNITAPTSQSFGGGGGGGGGGGSFH
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHHccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccHHHHHHHcccccccccccHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEccccccHHHHHHHHHcccccccHEcccccHHHcEEEEEccccccccccccHHHccHHHHHHHHcccccccccEcccccccEEEEccHHHHHcccccEEEEcccccccccccccHHHHHHHHHHHHHcccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHcccccccccccHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHccccccccccccccccHHHcccccEEEEcccccccccccccccccccccccccHHHHHcccccccccccccccccccccc
Coil and Loop (DISEMBL)
MATNRFICEVCNKgfqreqnlqlhrrghnlpwklkqktTKEVKrkvylcpeptcvhhdpsralgdltgikkhysrkhgekkwkcekcskryavqsdwkahsktcgtreyrcdcgtlfsrrdsfITHRAFCDALAQEsarhqpslsaigSHLYASTNNMALglsqvgpqlssikdhhqtnqsgdilclggsgsrstpfdhllspsmgsssssfrppqslastpffmqesnQNYHEEQQQHqqgllpnkpppfhglmqfadlqnnpnnsnpvtnsaAAANNLFNLSFlsnssstnslsnsnsnnnnnnaSNLMLsaagghhhhfnnneqngtastgtggvdhhqgtnnnlftnnlisdhqissgavpslfstssvhqnetmvPHMSATALLQKAAQmgstssnnnTASLLRSfggsssssgskpnnnnnnfggagnvfggpgssendnsssihdlmnpfaatnssifgtgsndqvnafsgqdqnhhrrhhhhhpnyeaklhhnmnagmggsdrmtrdFLGVGQIVRSVSGGFQQREKQQqqhggvidvssldsernitaptsqsfgggggggggggsfh
Flexible Loop (DISEMBL)
matnrficEVCNkgfqreqnlqlhrrghnlpwklkqkttkeVKRKVYLcpeptcvhhdpsralgdlTGIKKHysrkhgekkwkcekcskryavqsdwkahsktcgtreyrcdCGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQTNQSGDILCLGGSGSRSTPFDHLLSPSMGSSSSSFRPPQSLASTPFFMQESNQNYHEEQQQHQQGLLPNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSNSSSTNSLSNSNSNNNNNNASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNLFTNNLISDHQISSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSSNNNTASLLRSFGGSSSSSGSKPNNNNNNFGGAGNVFGGPGSSENDNSSSIHDLMNPFAATNSSIFGTGSNDQVNAFSGQDQNHHRRHHHHHPNYEAKLHHNMNAGMGGSDRMTRDFLGVGQIVRSVSGGFQQREKQQQQHGGVIDVSSLDSERNItaptsqsfgggggggggggsfh
Low Complexity Region (SEG)
MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQTNQSGDILCLGGSGSRSTPFDHllspsmgsssssfrppqslasTPFFMqesnqnyheeqqqhqqGLLPNKPPPFHGLMQFADLQnnpnnsnpvtnsaaaannlfnlsflsnssstnslsnsnsnnnnnnasnlmlsaagghhhhfnnneqngTASTGTGGVDHHQGTNNNLFTNNLISDHQISSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGstssnnntASLLRsfggsssssgskpnnnnnnfggagnvfggpgssENDNSSSIHDLMNPFAATNSSIFGTGSNDQVNAFSGQDQNhhrrhhhhhPNYEAKLHHNMNAGMGGSDRMTRDFLGVGQIVRSVSggfqqrekqqqqhggVIDVSSLDSERNITAPTSQSFgggggggggggSFH
Disordered region (IsUnstruct)
****RFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALA***************HLYA**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************FLGVGQIVR*****************************************************
Disordered Region (DISOPRED)
MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLK*****EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESA*************YASTNNMAL**********************D*L*L**************************************************************************************************************************************************************************************************************************************************************************************************************************************RDFLGVGQ********************************************************
Disordered Region (DISEMBL)
MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKK************CEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALA*********LSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQTNQSGDILCLGGSGSRSTPFDHLLS**************SLASTPFFMQESNQ************LLPNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSN************NNNNNNASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNLFTNNLISDHQISSGAVPSLFSTSSVHQNETMVPHMSATALLQ**********NNNTASLLRS***********PNNNNNNFGGAGNVFGGP********SSIHDLMNPFAATNSSIFGTGSNDQVNAFS**************PNYEAKLHHNMNAGMGGSDRMTRDFLGVGQIVRSVSG**************VIDVSSLDSERNITAPTSQSFGG************
Disordered Region (DISPRO)
***NRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESAR***************************************************GSRSTPFDHLLS********************************************KPPPFHGLMQFADLQNNPNNSNPVTNS******LFNLSFLSNSSS**SLSNSNSNNNNNNASNLMLSAAGG***********************************************************ETMVPHMSATALLQKAAQMGS**************************************************SSIHDLMNPFAATNSSIFGTGSNDQVNAFSGQDQNHHRRHHHHHPNYEA*********MGGSDRMTRDFLGVGQIVRSVSG*F***********************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQTNQSGDILCLGGSGSRSTPFDHLLSPSMGSSSSSFRPPQSLASTPFFMQESNQNYHEEQQQHQQGLLPNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSNSSSTNSLSNSNSNNNNNNASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNLFTNNLISDHQISSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSSNNNTASLLRSFGGSSSSSGSKPNNNNNNFGGAGNVFGGPGSSENDNSSSIHDLMNPFAATNSSIFGTGSNDQVNAFSGQDQNHHRRHHHHHPNYEAKLHHNMNAGMGGSDRMTRDFLGVGQIVRSVSGGFQQREKQQQQHGGVIDVSSLDSERNITAPTSQSFGGGGGGGGGGGSFH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	577	2.2.26 [Sep-21-2011]
Q9ZWA6	506	Zinc finger protein MAGPI	no	no	0.183	0.209	0.856	4e-77
Q700D2	503	Zinc finger protein JACKD	no	no	0.240	0.276	0.857	2e-75
Q9FFH3	466	Zinc finger protein NUTCR	no	no	0.240	0.298	0.856	3e-75
Q9C8N5	499	Protein SENSITIVE TO PROT	no	no	0.223	0.258	0.342	1e-18
Q943I6	522	Zinc finger protein STOP1	no	no	0.223	0.247	0.340	1e-18
Q2QX40	465	Zinc finger protein STAR3	no	no	0.223	0.277	0.333	6e-17
Q8VWG3	303	Protein TRANSPARENT TESTA	no	no	0.213	0.405	0.368	9e-15
O43313	823	ATM interactor OS=Homo sa	yes	no	0.206	0.144	0.322	2e-11
Q6P9S1	818	ATM interactor OS=Mus mus	yes	no	0.201	0.141	0.315	2e-10
Q6ZN06	617	Zinc finger protein 813 O	no	no	0.188	0.176	0.290	2e-06

>sp|Q9ZWA6|MGP_ARATH Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1

 Score =  289 bits (739), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 119/139 (85%), Positives = 135/139 (97%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS 60
           MATNRF+CE+C KGFQR+QNLQLHRRGHNLPWKLKQ+T+KEV+++VY+CPE +CVHH P+
Sbjct: 65  MATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPT 124

Query: 61  RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 120
           RALGDLTGIKKH+ RKHGEKKWKCEKC+KRYAVQSDWKAHSKTCGTREYRCDCGT+FSRR
Sbjct: 125 RALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRR 184

Query: 121 DSFITHRAFCDALAQESAR 139
           DSFITHRAFCDALA+E+AR
Sbjct: 185 DSFITHRAFCDALAEETAR 203

Probable transcription factor that regulates tissue boundaries and asymmetric cell division. Might be involved in the sequestration of 'SHORT-ROOT' to the nucleus.
Arabidopsis thaliana (taxid: 3702)

>sp|Q700D2|JKD_ARATH Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1

 Score =  283 bits (725), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 120/140 (85%), Positives = 133/140 (95%), Gaps = 1/140 (0%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEV-KRKVYLCPEPTCVHHDP 59
           MATNRF+CE+CNKGFQR+QNLQLHRRGHNLPWKLKQ++ +EV K+KVY+CP  TCVHHD 
Sbjct: 77  MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKKVYICPIKTCVHHDA 136

Query: 60  SRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSR 119
           SRALGDLTGIKKHYSRKHGEKKWKCEKCSK+YAVQSDWKAH+KTCGTREY+CDCGTLFSR
Sbjct: 137 SRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSR 196

Query: 120 RDSFITHRAFCDALAQESAR 139
           +DSFITHRAFCDAL +E AR
Sbjct: 197 KDSFITHRAFCDALTEEGAR 216

Probable transcription factor that regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action. Required for radial patterning and stem cell maintenance. Counteracted by 'MAGPIE' (MGP).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH3|NUC_ARATH Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1

 Score =  283 bits (724), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 119/139 (85%), Positives = 133/139 (95%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS 60
           MATNRF+CEVC KGFQR+QNLQLHRRGHNLPWKLKQ+T+KEV+++VY+CPE TCVHH  S
Sbjct: 61  MATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSS 120

Query: 61  RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 120
           RALGDLTGIKKH+ RKHGEKKW CEKC+KRYAVQSDWKAHSKTCGTREYRCDCGT+FSRR
Sbjct: 121 RALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRR 180

Query: 121 DSFITHRAFCDALAQESAR 139
           DSFITHRAFCDALA+E+A+
Sbjct: 181 DSFITHRAFCDALAEETAK 199

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8N5|STOP1_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 14/143 (9%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKV----------YLCP 50
           +A +   C +C KGF+R+ NL++H RGH   +K      K  K  V          Y CP
Sbjct: 239 LAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSEPMLIKRYSCP 298

Query: 51  EPTCV---HHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC-SKRYAVQSDWKAHSKTCGT 106
              C     H   + L  +  +K HY R H +K + C +C +K+++V +D K H K CG 
Sbjct: 299 FLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTHEKHCGK 358

Query: 107 REYRCDCGTLFSRRDSFITHRAF 129
            ++ C CGT FSR+D    H A 
Sbjct: 359 NKWLCSCGTTFSRKDKLFGHIAL 381

Probable transcription factor. Plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q943I6|STOP1_ORYSJ Zinc finger protein STOP1 homolog OS=Oryza sativa subsp. japonica GN=Os01g0871200 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 12/141 (8%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKV--------YLCPEP 52
           +A +   C +C KGF+R+ NL++H RGH   +K      K  K           Y CP  
Sbjct: 277 LAPHTHFCLICGKGFKRDANLRMHMRGHGDEYKTAAALAKPSKDSSLESAPVTRYSCPYV 336

Query: 53  TCV---HHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC-SKRYAVQSDWKAHSKTCGTRE 108
            C     H   + L  +  +K HY R H +K + C +C +K+++V +D K H K CG  +
Sbjct: 337 GCKRNKEHKKFQPLKTILCVKNHYKRSHCDKSYTCSRCNTKKFSVIADLKTHEKHCGRDK 396

Query: 109 YRCDCGTLFSRRDSFITHRAF 129
           + C CGT FSR+D    H A 
Sbjct: 397 WLCSCGTTFSRKDKLFGHVAL 417

Probable transcription factor that may be involved in aluminum tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QX40|ART1_ORYSJ Zinc finger protein STAR3 OS=Oryza sativa subsp. japonica GN=STAR3 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 15/144 (10%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWK-----------LKQKTTKEVKRKVYLC 49
           +A +   C +C KGF+R+ NL++H RGH   +K            + +       + Y C
Sbjct: 224 LAPHTHFCGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQPPQPERRYSC 283

Query: 50  PEPTCVH---HDPSRALGDLTGIKKHYSRKHGEKKWKCEKC-SKRYAVQSDWKAHSKTCG 105
           P   C     H   + L  +  +K HY R H EK+  C +C +KR++V +D K H K CG
Sbjct: 284 PHAGCKRNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMADLKTHEKHCG 343

Query: 106 TREYRCDCGTLFSRRDSFITHRAF 129
              + C CGT FSR+D    H A 
Sbjct: 344 RDRWLCSCGTSFSRKDKLFAHVAL 367

Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VWG3|TT1_ARATH Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 66/133 (49%), Gaps = 10/133 (7%)

Query: 6   FICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYL-CPEPTCVH-------H 57
           F C VC K F R  NLQ+H  GH   ++   ++ K  + +  L  P   CV        H
Sbjct: 145 FSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAMLGIPCYCCVEGCRNHIDH 204

Query: 58  DPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLF 117
             S+ L D   ++ HY RKHG K + C  C K  AV+ DW+ H K CG R + C CG+ F
Sbjct: 205 PRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTHEKNCGKR-WVCVCGSDF 263

Query: 118 SRRDSFITH-RAF 129
             + S   H +AF
Sbjct: 264 KHKRSLKDHVKAF 276

May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat.

Arabidopsis thaliana (taxid: 3702)

>sp|O43313|ATMIN_HUMAN ATM interactor OS=Homo sapiens GN=ATMIN PE=1 SV=2

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 8/127 (6%)

Query: 6   FICEV--CNKGFQREQNLQLHR-RGHNLPWKLKQKTT-KEVKR--KVYLCPEPTCVHHDP 59
            +C V  C K       L +H  + H L   +   T  K++K   K Y CP   C    P
Sbjct: 84  ILCTVRGCGKILPNSPALNMHLVKSHRLQDGIVNPTIRKDLKTGPKFYCCPIEGC-PRGP 142

Query: 60  SRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSR 119
            R     + +K+H+ + H EKK KC KCS  Y  + D K H++ CG + +RC CG  ++ 
Sbjct: 143 ERPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGTEWDLKRHAEDCG-KTFRCTCGCPYAS 201

Query: 120 RDSFITH 126
           R +  +H
Sbjct: 202 RTALQSH 208

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Homo sapiens (taxid: 9606)

>sp|Q6P9S1|ATMIN_MOUSE ATM interactor OS=Mus musculus GN=Atmin PE=2 SV=2

 Score = 67.8 bits (164), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 14/130 (10%)

Query: 6   FICEV--CNKGFQREQNLQLHR-RGHNL------PWKLKQKTTKEVKRKVYLCPEPTCVH 56
            +C V  C K       L +H  + H L      P   K  TT     K Y CP   C  
Sbjct: 80  ILCTVRGCGKILPNSPALNMHLVKSHRLQDGIVNPTIRKDLTTAP---KFYCCPIKGC-P 135

Query: 57  HDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTL 116
             P R     + +K+H+ + H EKK KC KCS  Y  + D K H + CG + ++C CG  
Sbjct: 136 RGPDRPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGTEWDLKRHEEDCG-KTFQCTCGCP 194

Query: 117 FSRRDSFITH 126
           ++ R +  +H
Sbjct: 195 YASRTALQSH 204

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Mus musculus (taxid: 10090)

>sp|Q6ZN06|ZN813_HUMAN Zinc finger protein 813 OS=Homo sapiens GN=ZNF813 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 22/131 (16%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS 60
           +   ++ C+VC K F R++NL  HRR H                K Y C E         
Sbjct: 238 LGEKQYKCDVCGKVFNRKRNLVCHRRCH-------------TGEKPYRCNE-------CG 277

Query: 61  RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC-DCGTLFS 118
           +       +  H     GEK +KCE+C K ++ +S+ K H +   G + Y+C +CG  FS
Sbjct: 278 KTFSQTYSLTCHRRLHTGEKPYKCEECDKAFSFKSNLKRHRRIHAGEKPYKCNECGKTFS 337

Query: 119 RRDSFITHRAF 129
           +  S   HR  
Sbjct: 338 QTSSLTCHRRL 348

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	577
225425944	603	PREDICTED: uncharacterized protein LOC10	0.885	0.847	0.605	1e-170
255561737	589	nucleic acid binding protein, putative [	0.873	0.855	0.627	1e-159
302398697	601	C2H2L domain class transcription factor	0.883	0.848	0.567	1e-141
225425946	587	PREDICTED: uncharacterized protein LOC10	0.876	0.862	0.568	1e-139
449445278	618	PREDICTED: uncharacterized protein LOC10	0.896	0.836	0.552	1e-135
224108165	530	predicted protein [Populus trichocarpa]	0.809	0.881	0.536	1e-134
255561735	571	zinc finger protein, putative [Ricinus c	0.821	0.830	0.532	1e-131
356523372	533	PREDICTED: zinc finger protein NUTCRACKE	0.774	0.838	0.502	1e-131
356575478	567	PREDICTED: zinc finger protein MAGPIE-li	0.811	0.825	0.538	1e-128
356536373	571	PREDICTED: zinc finger protein MAGPIE-li	0.798	0.807	0.532	1e-125

>gi|225425944|ref|XP_002268279.1| PREDICTED: uncharacterized protein LOC100251079 [Vitis vinifera]

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 358/591 (60%), Positives = 421/591 (71%), Gaps = 80/591 (13%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS 60
           MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEV+RKVYLCPEP CVHHDP+
Sbjct: 65  MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVRRKVYLCPEPGCVHHDPA 124

Query: 61  RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 120
           RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR
Sbjct: 125 RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 184

Query: 121 DSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQTNQ 180
           DSFITHRAFCDALAQESARH   +S IGSHLY S+ NM LGLSQVGPQ+SS+ D  Q++Q
Sbjct: 185 DSFITHRAFCDALAQESARHPTPMSTIGSHLYGSS-NMGLGLSQVGPQISSMPD--QSHQ 241

Query: 181 SGDILCLGGSGSRSTPFDHLLSPSMGSSSSSFRPPQSLASTPFFMQESNQNYHEEQQQHQ 240
            GD+L LG  G+R+  FDHL+ P++G  SSSFR PQ + S  F++ E NQ +HE+QQ   
Sbjct: 242 PGDMLRLG--GARAGQFDHLIPPAIG--SSSFRTPQPMPSQAFYIPEPNQEFHEDQQSQH 297

Query: 241 QGLLPNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSNSSSTNSLSNSNS 300
            GLL NK  PFHGL+   DLQNN       TN+ ++A NLFNLSF SNSS+TNS+ ++ +
Sbjct: 298 GGLLTNK--PFHGLVHLPDLQNN-------TNNPSSAANLFNLSFFSNSSNTNSMLSNTN 348

Query: 301 NNNNNN---ASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNLFTNNLISDH 357
           N NN+    +S L++S            +Q  T + G+G         NNLF +N+I D 
Sbjct: 349 NANNSTNMPSSGLLIS------------DQFNTVNGGSG------SERNNLFPSNIIGD- 389

Query: 358 QISSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSSNNNTASLLRSFGGSSSS 417
           QISSG VPSLFSTS   QNE  V HMSATALLQKAAQMGSTSS NN+ASLLR F GSSS+
Sbjct: 390 QISSG-VPSLFSTSL--QNENAVSHMSATALLQKAAQMGSTSS-NNSASLLRGFAGSSSA 445

Query: 418 SG-SKPNNNNNNFGGAGNVFGGPGSSENDNSSSIHDLMNPFAATNSSIFGTGSNDQVNAF 476
           +  S       NFGG   VFG       +N S + DLMN      SS    G +  VNA+
Sbjct: 446 NAKSDRPLVGPNFGG---VFG-------ENESHLQDLMN-SLGGGSSSIFGGGSGGVNAY 494

Query: 477 SG-QDQNHH----------------RRHHHHHPNY----EAKLHHNMNAGMGGSDRMTRD 515
           SG +++N +                ++ H H PN+    E KLH N+ A MGGSDR+TRD
Sbjct: 495 SGHENENTYGGFNANRSTLEQQQQQQQQHRHGPNFCNIDEIKLHQNLTANMGGSDRLTRD 554

Query: 516 FLGVGQIVRSVSGGFQQREKQQQQHGGVIDVSSLDSERNITAPTSQSFGGG 566
           FLGVGQ+VR++SGGF QR+         I++S+LDSER+ +A TSQ+FGGG
Sbjct: 555 FLGVGQMVRTISGGFSQRDLPPPG----INISTLDSERS-SAQTSQAFGGG 600

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561737|ref|XP_002521878.1| nucleic acid binding protein, putative [Ricinus communis] gi|223538916|gb|EEF40514.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 366/583 (62%), Positives = 417/583 (71%), Gaps = 79/583 (13%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS 60
           MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS
Sbjct: 67  MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS 126

Query: 61  RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 120
           RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR
Sbjct: 127 RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 186

Query: 121 DSFITHRAFCDALAQESARHQPS-LSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQTN 179
           DSFITHRAFCDALAQESAR+ P+ L+ IGSHLY  + NM+LGLSQV  Q+SS++D     
Sbjct: 187 DSFITHRAFCDALAQESARNPPTNLNTIGSHLYGGS-NMSLGLSQVNTQISSMQD----- 240

Query: 180 QSGDILCLGGSGSRSTPFDHLLSPSMGSSSSSFR--PPQSLASTPFFMQESNQNYHEEQQ 237
           QS DIL LGG GSR+  FDHLL  SMG  S SFR  PPQ + S  FFMQE NQNYH+E Q
Sbjct: 241 QSSDILRLGG-GSRTGQFDHLLPSSMG-GSVSFRPSPPQPMPSPAFFMQEPNQNYHDEHQ 298

Query: 238 QHQQGLLPNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSNSSSTNSLSN 297
             QQGLL NK P  HGLMQFA+L N  N + P       A+N+FNLSFLSNSS+T+  S 
Sbjct: 299 A-QQGLLQNK-PFHHGLMQFAELHNTTNTNPP-------ASNIFNLSFLSNSSTTS--SI 347

Query: 298 SNSNNNNNNASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNLFTNNLISDH 357
           +NSNN NN+ ++L++S      + F+N  QNG +  G G         + +F+N+++ DH
Sbjct: 348 TNSNNANNSNNSLLMS------NQFSN--QNGASGGGDG---------STMFSNHIMGDH 390

Query: 358 QISSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSSNNNTASLLRSFGGSSSS 417
              +  VPSLF TSSV ++ T VPHMSATALLQKAAQMGSTSS   T S        SSS
Sbjct: 391 HQMNSGVPSLF-TSSVQKDNT-VPHMSATALLQKAAQMGSTSS---TYSASLLRSFGSSS 445

Query: 418 SGSKPNNNNNNFGGAGNVFGGPGSSENDNSSSIHDLMNPFAAT-NSSIFGTGSNDQVNAF 476
           S +   +   NF   G +F     SEND  +++HDLMN FAAT NSSIFG G  +     
Sbjct: 446 SSTGMKSAAANF---GEIF-----SENDQ-NNLHDLMNSFAATGNSSIFGHGQENPYGTS 496

Query: 477 SGQDQNHHRRHHHHHPNYEAKLHHNMNAGMGGSDRMTRDFLGVGQIVRSVSGGFQQREKQ 536
            G  +             EAK+H  +NA +GGSDR+TRDFLGVGQ+VRS+SGGF QREKQ
Sbjct: 497 GGNLE-------------EAKMHQGLNASIGGSDRLTRDFLGVGQVVRSMSGGFSQREKQ 543

Query: 537 QQQHGGV-----IDV--SSLDSERNI-----TAPTSQSFGGGG 567
           +Q          ID+  SSLDSERNI      APTSQSFGG G
Sbjct: 544 RQPPQQQQQQQGIDMGGSSLDSERNIAAAAAAAPTSQSFGGSG 586

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398697|gb|ADL36643.1| C2H2L domain class transcription factor [Malus x domestica]

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 333/587 (56%), Positives = 392/587 (66%), Gaps = 77/587 (13%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS 60
           MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKE KRKVYLCPEPTCVHHDPS
Sbjct: 69  MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPS 128

Query: 61  RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 120
           RALGDLTGIKKHY RKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR
Sbjct: 129 RALGDLTGIKKHYFRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 188

Query: 121 DSFITHRAFCDALAQESARHQPSLSAIGSHLYA--STNNMALGLSQ--VGP--QLSSIKD 174
           DSFITHRAFCDALAQESARH PSL+ IGS LY   S +N  LGLS   VGP  QLSS+ D
Sbjct: 189 DSFITHRAFCDALAQESARHPPSLTTIGSSLYGGGSLSNTGLGLSHQVVGPPHQLSSL-D 247

Query: 175 HHQTNQSGDILCLGGS-----GSRSTPFDHLLS-PSMGSSSSSFRPPQSLASTPFFMQES 228
           H  +NQ  DIL LGGS       R+  FDHLLS PSMGSS   FR  QS A++ F    S
Sbjct: 248 H--SNQPSDILRLGGSSGAAAADRAGQFDHLLSSPSMGSS---FRLAQSSAASFFMTGAS 302

Query: 229 NQNYHEEQQQHQQGLLPNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSN 288
           + +   +QQ H Q         FHGLMQF        + +P  + + A  NLFN+ F+SN
Sbjct: 303 DHDQSNQQQYHDQ------DKSFHGLMQF-------THHSPHQHHSGAGTNLFNVPFVSN 349

Query: 289 SSSTNSLSNSNSNNNNNNASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNL 348
           S+++NS SNS+S  + N               HFN N  NG+AS G   V      +NNL
Sbjct: 350 STNSNSASNSHSLISPN---------------HFNTNA-NGSASGGGNEV------SNNL 387

Query: 349 FTNNLISDHQISSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSSNNNTAS-L 407
           F  +++      S  VPSL+S +   Q + +  HMSATALLQKAAQMGS +SNNN  + L
Sbjct: 388 FAGHIMGGGDHMSSGVPSLYSNNGNSQQQAISSHMSATALLQKAAQMGSNTSNNNNTTSL 447

Query: 408 LRSFGGSSSSSGSKPNNNNNNFGGA-GNVFGGPGSSENDNSSSIHDLMNPFAATNSS--I 464
           LRSFG SSS++ +KP+        + G +FG    S+  + S + DLMN FA+      I
Sbjct: 448 LRSFGSSSSTT-TKPDRPGTLVPSSLGRMFG----SDQTDQSHLQDLMNSFASGGGGSSI 502

Query: 465 FGTGSNDQVNAFSGQDQNHHRRHHHHHPNYEAKL--HHNMNAGMGGSDRMTRDFLGVGQI 522
           FG  +  + +A + +  N            +AKL  H  +N   GGSDR+TRDFLGVGQ+
Sbjct: 503 FGNAAFGRYDASANRAINME----------DAKLQQHIGLNNIGGGSDRLTRDFLGVGQV 552

Query: 523 VRSVSGGFQQREKQQQQHGGVIDVSSLDSERN--ITAPTSQSFGGGG 567
           VRS+SGGF   ++ +QQHGG+  +SSLDSE N    AP++QSFGGGG
Sbjct: 553 VRSMSGGFSH-QRSEQQHGGMEMLSSLDSESNGAAAAPSTQSFGGGG 598

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425946|ref|XP_002273614.1| PREDICTED: uncharacterized protein LOC100257993 [Vitis vinifera]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 328/577 (56%), Positives = 399/577 (69%), Gaps = 71/577 (12%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS 60
           MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKL+QKTTKEV+RKVYLCPEPTCVHHDPS
Sbjct: 66  MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLRQKTTKEVRRKVYLCPEPTCVHHDPS 125

Query: 61  RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 120
           RALGDLTGIKKHYSRKHGEKKWKC+KCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR
Sbjct: 126 RALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 185

Query: 121 DSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQTNQ 180
           DSFITHRAFCDALAQESAR+ PSL+ +G HLY  T+ M LGLSQVG Q++S+  H Q + 
Sbjct: 186 DSFITHRAFCDALAQESARNPPSLTNMGGHLYG-TSQMTLGLSQVGSQIASL--HDQNHP 242

Query: 181 SGDILCLGGSGSRSTPFDHLLSPSMGSSSSSF-RPPQSLASTPFFMQESNQNYHEEQQQH 239
           S +IL L  +G+    ++HLL PS    + SF +PPQ + S+ F+M +SNQ Y E Q  H
Sbjct: 243 SSNILRLDSAGAAK--YEHLLPPS----NPSFGKPPQPMPSSAFYMPDSNQGYQEHQSHH 296

Query: 240 QQGLLPNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSNSSSTNSLSNSN 299
              LL NKP  FHGLMQF D Q N NNS       +AA NLFNL F  N+S+++S+SNSN
Sbjct: 297 T--LLGNKP--FHGLMQFPDHQGNANNS------PSAAANLFNLGFFPNNSTSSSISNSN 346

Query: 300 SNNNNNNASNLMLSAAGGHHHHFNNNEQ--NGTASTGTGGVDHHQGTNNNLFTNNLISDH 357
           + NN+       L  +G     F + +Q  NG AS          G    LF++++ SDH
Sbjct: 347 NANNSTT-----LPPSG-----FLSPDQFNNGNAS----------GQGTTLFSSSM-SDH 385

Query: 358 QISSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSSNNNTASLLRSFGGSSSS 417
            + SG + SL+STS   Q E++ PHMSATALLQKAAQMG T+S+N ++SLLR  GGSSS+
Sbjct: 386 -VGSG-LSSLYSTS--MQQESLAPHMSATALLQKAAQMGPTTSSN-SSSLLRGLGGSSST 440

Query: 418 SGSKPNNN--NNNFGGAGNVFGGPGSSENDNSSSIHDLMNPFAATNSSIFGTGSNDQVNA 475
            G+K +    ++NF            S+ +N + +  LMN  A  NSSIFG   + Q N 
Sbjct: 441 -GAKSDRQLLSSNFSSL--------RSQMENENHLQGLMNSLANGNSSIFGGSGHAQENN 491

Query: 476 FSGQD-QNHHRRHHHHHPNY----EAKLHHNMNAGMGGSDRMTRDFLGVGQIVRSVSGGF 530
           F G + +       H + N+    +AKLH ++   MGG DR+T DFLGVG +VR+V GGF
Sbjct: 492 FGGFNGRGITLEQQHKNTNFSKVDDAKLHQSLGVSMGGPDRLTLDFLGVGGVVRNVGGGF 551

Query: 531 QQREKQQQQHGGVIDVSSLDSERNITAPT--SQSFGG 565
            QRE   Q+H  V+++SSLDSE    A    S+ FGG
Sbjct: 552 SQRE---QRH--VVEMSSLDSEIKTAAAAQGSRPFGG 583

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445278|ref|XP_004140400.1| PREDICTED: uncharacterized protein LOC101219959 [Cucumis sativus] gi|449487889|ref|XP_004157851.1| PREDICTED: uncharacterized protein LOC101227194 [Cucumis sativus]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 328/594 (55%), Positives = 398/594 (67%), Gaps = 77/594 (12%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS 60
           MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQK+TKE KRKVYLCPEPTCVHHDPS
Sbjct: 73  MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPS 132

Query: 61  RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 120
           RALGDLTGIKKHYSRKHGEKKWKC+KCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR
Sbjct: 133 RALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 192

Query: 121 DSFITHRAFCDALAQESARHQPSL-SAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQTN 179
           DSFITHRAFCDALAQESARH P+L +AIGSHLY   +N+ L LSQV PQ+SS++DH    
Sbjct: 193 DSFITHRAFCDALAQESARHPPNLGTAIGSHLYGGNSNVGLTLSQV-PQMSSLQDHSNIT 251

Query: 180 QSG-DILCLGGSGSRSTPFDHLLSPSMGSSSSSFRPP--QSLAST--PFF--MQESNQN- 231
           QS  D+L LG  G R+  F HLL PS+G   SSFRPP  Q++ S+   FF    ++NQN 
Sbjct: 252 QSPHDVLRLG--GGRTGQFTHLLPPSIG---SSFRPPPQQAMPSSNAAFFGLSDQTNQNS 306

Query: 232 YHEE--QQQHQQGLLPNKPPPFHGLMQF-ADLQNNPNNSNPVTNSAAAANNLFNLSFLSN 288
           +HE+  Q Q QQGL  NK  PFHGLMQF +D+Q +        N+  +A+NLFNLSF+SN
Sbjct: 307 FHEDHHQSQSQQGLFGNK--PFHGLMQFPSDIQTH------ANNNNNSASNLFNLSFISN 358

Query: 289 SSSTNSLSNSNSNNNNNNASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNL 348
            +  N+ + +N+N+ N N SN   +         NN   +           ++ G  +N+
Sbjct: 359 PTGDNTSNMNNNNDTNTNNSNSSSNNN-------NNLPSSLLNQFNGTNNGNNDGPASNI 411

Query: 349 FTNNLISDHQISSGAVPSLFSTSS------VHQNETMVPHMSATALLQKAAQMG-STSSN 401
           F  N++ D QI+S AVPSL+S ++             +PHMSATALLQKAAQ+G +TSS+
Sbjct: 412 FAVNIMGD-QINSAAVPSLYSNTAPGGCSSGTSGGGAIPHMSATALLQKAAQLGSTTSSS 470

Query: 402 NNTASLLRSFGGSSSSSGSKPNNNNNNFGGAGNVFGGPGSSENDNSSSIHDLMNPFAATN 461
           N TA+LLR+FG SS+SSG   +         G VFG       +N S++ DLMN FA  +
Sbjct: 471 NTTATLLRTFGSSSTSSGKASDRTLFPPSYGGVVFG-------ENESNLQDLMNSFANAS 523

Query: 462 SSIFGTGSNDQVNAFSGQDQNHHRRHHHHHPNYEAKLHHNMNAGM--GGSDRMTRDFLGV 519
           S   G+G        S +D                KL  N++     GG+DR+TRDFLGV
Sbjct: 524 S---GSGMFGSFGVESLED--------------PTKLQQNLSTVSMGGGTDRLTRDFLGV 566

Query: 520 GQIVRSVS-----GGFQQREKQQQQHGGVIDVSSLDSERNITAPTSQSFGGGGG 568
           GQIVRS+S     GG+ QRE +Q   G V++     +E N TAP+S +FGGG G
Sbjct: 567 GQIVRSMSGGGGGGGYTQREHKQGGQGIVME----GNESN-TAPSSNAFGGGNG 615

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108165|ref|XP_002314745.1| predicted protein [Populus trichocarpa] gi|222863785|gb|EEF00916.1| predicted protein [Populus trichocarpa]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 288/537 (53%), Positives = 358/537 (66%), Gaps = 70/537 (13%)

Query: 5   RFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALG 64
           +FICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALG
Sbjct: 53  KFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALG 112

Query: 65  DLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFI 124
           DLTGIKKHY RKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFI
Sbjct: 113 DLTGIKKHYFRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFI 172

Query: 125 THRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQTNQSGDI 184
           THRAFCDALAQESARH  SL+ IGSHLY + N+M+LG SQVG Q+S ++DHH +    ++
Sbjct: 173 THRAFCDALAQESARHPTSLNTIGSHLYGN-NHMSLGFSQVGSQISHLQDHHPSGN--NM 229

Query: 185 LCLGGSGSRSTPFDHLLSPSMGSSSSSFRPPQSLASTPFFMQESNQNYHEEQQQHQQGLL 244
           L LG +G+ +  F+HL+ P    S         +  + FFM ++N           QG  
Sbjct: 230 LRLGSAGAAN--FEHLIPPPNPPSMP------MMPPSGFFMGDAN-----------QGPF 270

Query: 245 PNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSNSSSTNSLSNSNSNNNN 304
           PNK    HGLMQ  DLQ+N       TN+ ++A+NLFN  F SN+S+T   SN+++ N  
Sbjct: 271 PNK--SLHGLMQLPDLQSN-------TNNPSSASNLFNFGFFSNNSNTGRTSNNDNANTG 321

Query: 305 NNASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNLFTNNLISDHQISSGAV 364
           +  +NL   A+ G  +    N  NG             G   ++F  N+  DH  S  A+
Sbjct: 322 STTTNL---ASPGLLNATQFNNVNGA------------GQRTSVFPTNMSGDHVGS--AM 364

Query: 365 PSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSSNNNTASLLRSFGGSSSSSGSKPNN 424
            S F+TS   Q E + PH+SATALLQKAAQMGST+S+N+ + LLRS  GSSS++G+K   
Sbjct: 365 SSFFNTS--MQQENITPHVSATALLQKAAQMGSTTSSNSPSGLLRSL-GSSSTTGAKSIR 421

Query: 425 N--NNNFGGA---GNVFGGPGSSENDNSSSIHDLMNPFAATNSSIFGTGSNDQVNAFSGQ 479
              + NFG +    NV G    +  ++ S +  LMN  A  +SSIFG   N+Q N+++G 
Sbjct: 422 PLVSTNFGSSFSNANV-GESLETHMESESQLQGLMNSLANGSSSIFG---NEQDNSYTGF 477

Query: 480 DQNHHRRHHHHHPNYEAKLHHNMNAGMGGSDRMTRDFLGVGQIVRSVSGGFQQREKQ 536
           D +          ++      NM+ G+ GSD++T DFLGVG  VR++ GGF QR++Q
Sbjct: 478 DSS----------SFSKADEGNMHQGLAGSDKLTLDFLGVGGRVRNIGGGFPQRQQQ 524

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561735|ref|XP_002521877.1| zinc finger protein, putative [Ricinus communis] gi|223538915|gb|EEF40513.1| zinc finger protein, putative [Ricinus communis]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 301/565 (53%), Positives = 370/565 (65%), Gaps = 91/565 (16%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS 60
           MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHD S
Sbjct: 75  MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDAS 134

Query: 61  RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 120
           RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR
Sbjct: 135 RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 194

Query: 121 DSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQTNQ 180
           DSFITHRAFCDALAQESARH   L+ IGSHLY + N+M+LGLSQVG  +SS++D  Q + 
Sbjct: 195 DSFITHRAFCDALAQESARHPTGLNTIGSHLYGN-NHMSLGLSQVGSPISSLQD--QNHS 251

Query: 181 SGDILCLGGSGSRSTPFDHLLSPSMGSSSSSFRPPQSLASTPFFMQESNQNYHEEQQQHQ 240
           S ++L LG +G  +  F+H++ PS  +S        ++ ++ FFM ++N           
Sbjct: 252 SSNLLRLGSAG--AAKFEHIIPPSNSTSLP------TMPASAFFMSDAN----------- 292

Query: 241 QGLLPNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSNSSSTNSLSNSNS 300
           QG   NK  P HGLMQ  DLQ+        TN+++ A NLFNLSF SN+S  N +SNS++
Sbjct: 293 QGSFSNK--PLHGLMQLPDLQS-------ATNNSSVATNLFNLSFFSNNSPGNRISNSDN 343

Query: 301 NNNNNNASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNLFTNNLISDHQIS 360
            N++  A+NL+ S         + N  NG    G GG    QG+   +F NN+     + 
Sbjct: 344 GNSSTAATNLVNSG------FLSPNPFNG----GNGG----QGS--TIFANNM--GDPVG 385

Query: 361 SGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSSNNNTASLLRSFGGSSSSSGS 420
           SG +PSL+S S   Q E + PHMSATALLQKAAQMGST+S+NN ++LLR   GSSSS+G+
Sbjct: 386 SG-IPSLYSNS--MQQENITPHMSATALLQKAAQMGSTTSSNNNSTLLRGL-GSSSSTGN 441

Query: 421 KPNNN---NNNFGGA-GNV---------FGGPGSSENDNSSSIHDLMNPFAATNSSIFGT 467
           K + +   + NFG + GN           G    SEN     +  LMN  A   SSIFG 
Sbjct: 442 KSDRSPLVSANFGSSFGNAKIGDHHHQGLGTQIESENQ----LQGLMNSLANGGSSIFG- 496

Query: 468 GSNDQVNAFSGQDQNHHRRHHHHHPNYEAKLHHNMNAGMGGSDRMTRDFLGVGQIVRSVS 527
           G + Q N F G   +       H+    + +          ++++T DFLGVG +VR++ 
Sbjct: 497 GGHGQDNGFGGFTSSGISLEQPHNSTSFSNVDE--------ANKLTLDFLGVGGMVRNIG 548

Query: 528 GGFQQREKQQQQHGGVIDVSSLDSE 552
           G          QHG  I++S+LD+E
Sbjct: 549 G----------QHG--INLSALDTE 561

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523372|ref|XP_003530314.1| PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 294/585 (50%), Positives = 349/585 (59%), Gaps = 138/585 (23%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS 60
           MATNRF+CEVCNKGFQREQNLQLHRRGHNLPWKLKQKT KE KRKVYLCPEPTCVHHDPS
Sbjct: 66  MATNRFLCEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPS 125

Query: 61  RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 120
           RALGDLTGIKKHYSRKHGEKKWKC+KCSK+YAVQSDWKAHSKTCGTREYRCDCGTLFSRR
Sbjct: 126 RALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 185

Query: 121 DSFITHRAFCDALAQESARHQPS--LSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQT 178
           DSFITHRAFCDALAQESAR QP    SAI + LY ++NN++LGLSQ+GPQ+ SI  H Q 
Sbjct: 186 DSFITHRAFCDALAQESARDQPPNLSSAISNQLYGNSNNISLGLSQMGPQIPSI--HDQN 243

Query: 179 NQSGDILCLGGSGSRSTPFDHLLSPSMGSSSSSFRPPQSLASTPFFMQESNQNYHEEQQQ 238
           +QS D+L  GG+  R+  FDH+L P++ +SSS FRP  S+ + PFFMQE NQ YH+  + 
Sbjct: 244 HQSSDLLHFGGA-PRTGQFDHILPPNI-ASSSPFRP--SMQTPPFFMQEPNQTYHDSNK- 298

Query: 239 HQQGLLPNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSNSSSTNSLSNS 298
                      PF GL+Q +DL N         N+A + +N FNL FLSN +        
Sbjct: 299 -----------PFQGLIQLSDLNN---------NNAPSGSNFFNLPFLSNRA-------- 330

Query: 299 NSNNNNNNASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNLFTNNLISDHQ 358
              N NNN S             FN  E++   S  T                N+ +DHQ
Sbjct: 331 ---NKNNNYSE--------EQQQFNTAEESNFFSESTM---------------NIGTDHQ 364

Query: 359 I-SSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSSNN-------------NT 404
             S+   PSLFST+S+    T + HMSATALLQKAAQMGSTSS+N             + 
Sbjct: 365 ANSTTTAPSLFSTNSLQ--NTNISHMSATALLQKAAQMGSTSSSNHNIINNNTTNNNPSA 422

Query: 405 ASLLRSFGGSSSSSGSKPNNNNNNFGGAGNVFGGPGSSENDNSSSIHDLMNPFAATNSSI 464
           +S+LRS    S                   + GG G+     ++S+ ++M+         
Sbjct: 423 SSILRSLASKSDQR---------------QLGGGAGNYATIFNNSVQEMMD--------- 458

Query: 465 FGTGSNDQVNAFSGQDQNHHRRHHHHHPNYEAKLHHNMNAGMGGSDRMTRDFLGVGQIVR 524
                   ++ F   D       HH   N E KL      G+GGSDR+TRDFLGV Q  +
Sbjct: 459 --------ISGFEAYD-------HHGGMNKEQKL------GVGGSDRLTRDFLGVAQQQQ 497

Query: 525 SVSGGFQQREKQQQQHGGVIDVSSLDSER--NITAPTSQSFGGGG 567
                   RE       G   VSSL+SE   N  AP+ QSFG  G
Sbjct: 498 QQQ-----RE-------GFNLVSSLESETNNNNAAPSGQSFGSDG 530

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575478|ref|XP_003555867.1| PREDICTED: zinc finger protein MAGPIE-like [Glycine max]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 303/563 (53%), Positives = 357/563 (63%), Gaps = 95/563 (16%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS 60
           MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKE KRKVYLCPEPTCVHHDPS
Sbjct: 66  MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPS 125

Query: 61  RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 120
           RALGDLTGIKKHYSRKHGEKKWKC+KCSK+YAVQSDWKAHSKTCGTREYRCDCGTLFSRR
Sbjct: 126 RALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 185

Query: 121 DSFITHRAFCDALAQESARHQPSLSA--IGSHLYASTNNMALGLSQVGPQLSSIKDHHQT 178
           DSFITHRAFCDALAQESAR  PSLS   IGSHLY ST NMAL LSQVG Q+S+++D +  
Sbjct: 186 DSFITHRAFCDALAQESARQPPSLSGGGIGSHLYGSTTNMALNLSQVGSQISTMQDPNA- 244

Query: 179 NQSGDILCLGGSGSRSTPFDHLLSPSMGSSSSSFRPP-QSLASTPFFMQ-ESNQNYHEEQ 236
            Q  ++L LG +  R+  FDH+L        S FRP  Q     PFFM  E NQ YH   
Sbjct: 245 -QPTELLRLGAASGRTGQFDHILG-------SPFRPSNQQQQQQPFFMSSEPNQTYHH-- 294

Query: 237 QQHQQGLLPNKPPPFH-GLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSNSSSTNSL 295
                   P++  PF  GLMQ +D          + N++   N+ F+L FLSN++S  S 
Sbjct: 295 --------PDQNKPFQQGLMQLSDH---------LNNNSHHNNSPFSLPFLSNNTSNASF 337

Query: 296 SNSNSNNNNNNASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNLFTNNLIS 355
           S                        HFNN    G  +                  NN   
Sbjct: 338 S-----------------------EHFNNANGGGGNNNNN---------------NNNEG 359

Query: 356 DHQISSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSSNNNTASLLRSFGGSS 415
            +  ++ + PSLFS S    N + + HMSATALLQKAAQMG+T+SN  TASLL+SFG +S
Sbjct: 360 TNYFATSSAPSLFSNSV---NASALSHMSATALLQKAAQMGATTSNGGTASLLKSFGSAS 416

Query: 416 SSSGSKPNNNNNNFGGAGNVFGGPGSSENDNSSSIHDLMNPFAAT-NSSIFGTGSNDQVN 474
           SSSG   +   N       +FGG       ++S++ DLMN FA   NSSIF     D   
Sbjct: 417 SSSGGGGSKLVNAANYVSGMFGGNNHVNEQSNSNLQDLMNSFAVGGNSSIF----EDGFE 472

Query: 475 AFSGQDQNHHRRHHHHHPNYEAKLH--HNMNAGMGGSDRMTRDFLGVGQIVRSVSG--GF 530
           A+          H +++ N + K+H     ++ +GGSDR+TRDFLGVGQIVR +SG  G 
Sbjct: 473 AY---------EHSNNNSNRDPKVHAMSGSSSSIGGSDRLTRDFLGVGQIVRGMSGSGGV 523

Query: 531 QQREKQQQQHGGVIDVSSLDSER 553
            QRE QQQQHG   ++SSL++ER
Sbjct: 524 AQRE-QQQQHG--FNLSSLEAER 543

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536373|ref|XP_003536713.1| PREDICTED: zinc finger protein MAGPIE-like [Glycine max]

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 304/571 (53%), Positives = 351/571 (61%), Gaps = 110/571 (19%)

Query: 1   MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS 60
           MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKE KRKVYLCPEPTCVHHDPS
Sbjct: 67  MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPS 126

Query: 61  RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 120
           RALGDLTGIKKHYSRKHGEKKWKC+KCSK+YAVQSDWKAHSKTCGTREYRCDCGTLFSRR
Sbjct: 127 RALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 186

Query: 121 DSFITHRAFCDALAQESARHQPSLS--AIGSHLYASTNNMALGLSQVGPQLSSIKDHHQT 178
           DSFITHRAFCDALAQESAR  PSLS   IGSHLY ST NMAL LSQVG Q+    +   T
Sbjct: 187 DSFITHRAFCDALAQESARQPPSLSGGGIGSHLYGSTTNMALNLSQVGSQIQDPSNAQPT 246

Query: 179 NQSGDILCLGGSGSRSTPFDHLLSPSMGSSSSSFRPPQSLASTPFFMQES-NQNYHEEQQ 237
               ++L LG +  R+  FDH+L        S FRP       PFFM E  NQ YH    
Sbjct: 247 ----ELLRLGATSGRTGHFDHIL-------GSPFRPSNQ-QQQPFFMSEQPNQTYHH--- 291

Query: 238 QHQQGLLPNKPPPF-HGLM-QFADLQNNPNNSNPVTNSAAAANNLFNLSFLSNSSSTNSL 295
                  P++  PF  GLM Q +D  +  NN++P           FNL FLS++++  S 
Sbjct: 292 -------PDQNKPFQQGLMQQLSDHHHLNNNNSP-----------FNLPFLSSNTANASF 333

Query: 296 SNSNSNNNNNNASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNLFTNNLIS 355
           S                        HFNN    G  +    G ++               
Sbjct: 334 S-----------------------EHFNNANGGGNNNNNNEGTNY--------------- 355

Query: 356 DHQISSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSSNNNTASLLRSFGGSS 415
               ++ + PSLFS S+      +  HMSATALLQKAAQMG+TSS N TASLL+SFG +S
Sbjct: 356 ---FATSSAPSLFSNSANANANALS-HMSATALLQKAAQMGATSS-NGTASLLKSFGSAS 410

Query: 416 SSSGSK----------PNNNNNNFGGAGNVFGGPGSSENDNSSSIHDLMNPFAA-TNSSI 464
           SSSG            P  N  N+   G +FGG   +E  ++S++ DLMN FA   NSSI
Sbjct: 411 SSSGGGSKSEQQHRVPPLVNAANY--VGGMFGGNHVNEQQSNSNLQDLMNSFAVGGNSSI 468

Query: 465 FGTGSNDQVNAFSGQDQNHHRRHHHHHPNYEAKLHHNMNAGMGGSDRMTRDFLGVGQIVR 524
           F  G       F   D  H   +++  P   A    N    +GGSDR+TRDFLGVGQIVR
Sbjct: 469 FEAG------GFEAYD--HSNNNNNRDPKVLAMSGSN---SVGGSDRLTRDFLGVGQIVR 517

Query: 525 SV--SGGFQQREKQQQQHGGVIDVSSLDSER 553
            +  SGG  QRE QQQQHG   ++SSL++ER
Sbjct: 518 GMSGSGGVAQRE-QQQQHG--FNLSSLEAER 545

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	577
TAIR|locus:2051698	602	IDD5 "AT2G02070" [Arabidopsis	0.318	0.305	0.787	5.6e-103
TAIR|locus:2051688	516	IDD4 "indeterminate(ID)-domain	0.298	0.333	0.780	9.2e-86
TAIR|locus:2173624	500	IDD1 "AT5G66730" [Arabidopsis	0.242	0.28	0.85	1.1e-82
TAIR|locus:2024193	506	MGP "AT1G03840" [Arabidopsis t	0.259	0.296	0.802	1.7e-82
TAIR|locus:2078262	446	AT3G45260 "AT3G45260" [Arabido	0.311	0.403	0.698	1.3e-80
TAIR|locus:2204503	467	AT1G14580 "AT1G14580" [Arabido	0.249	0.308	0.889	1.7e-80
TAIR|locus:2143543	503	JKD "AT5G03150" [Arabidopsis t	0.273	0.314	0.783	2.2e-80
TAIR|locus:2167608	466	NUC "AT5G44160" [Arabidopsis t	0.308	0.381	0.706	2.2e-80
TAIR|locus:2205672	455	IDD7 "AT1G55110" [Arabidopsis	0.305	0.386	0.712	1.2e-79
TAIR|locus:2101739	452	IDD2 "AT3G50700" [Arabidopsis	0.251	0.320	0.834	2.4e-79

TAIR|locus:2051698 IDD5 "AT2G02070" [Arabidopsis thaliana (taxid:3702)]

 Score = 823 (294.8 bits), Expect = 5.6e-103, Sum P(3) = 5.6e-103
 Identities = 159/202 (78%), Positives = 172/202 (85%)

Query:     1 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS 60
             MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQK+TKEVKRKVYLCPEP+CVHHDPS
Sbjct:    76 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRKVYLCPEPSCVHHDPS 135

Query:    61 RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 120
             RALGDLTGIKKHY RKHGEKKWKC+KCSKRYAVQSDWKAHSKTCGT+EYRCDCGTLFSRR
Sbjct:   136 RALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTLFSRR 195

Query:   121 DSFITHRAFCDALAQESARHQPSLSAIGSHLYA---STNN-------MALGLSQVG-PQL 169
             DSFITHRAFCDALAQESARH  SL+++ SH +    +TNN       M LGLS +G PQ 
Sbjct:   196 DSFITHRAFCDALAQESARHPTSLTSLPSHHFPYGQNTNNSNNNASSMILGLSHMGAPQ- 254

Query:   170 SSIKDHHQTNQSGDILCLGGSG 191
              ++ DH    Q GD+L LG  G
Sbjct:   255 -NL-DH----QPGDVLRLGSGG 270

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006417 "regulation of translation" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2051688 IDD4 "indeterminate(ID)-domain 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 762 (273.3 bits), Expect = 9.2e-86, Sum P(2) = 9.2e-86
 Identities = 139/178 (78%), Positives = 158/178 (88%)

Query:     1 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS 60
             MATNRFIC+VCNKGFQREQNLQLHRRGHNLPWKLKQK+TKEVKRKVYLCPEPTCVHHDPS
Sbjct:    78 MATNRFICDVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRKVYLCPEPTCVHHDPS 137

Query:    61 RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 120
             RALGDLTGIKKHY RKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGT+EYRCDCGT+FSRR
Sbjct:   138 RALGDLTGIKKHYYRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTIFSRR 197

Query:   121 DSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALG--LSQVGPQLSSIKDHH 176
             DS+ITHRAFCDAL QE+AR+ P++S   + + A+++ +  G    ++G   S++  HH
Sbjct:   198 DSYITHRAFCDALIQETARN-PTVSF--TSMTAASSGVGSGGIYGRLGGG-SALSHHH 251

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2173624 IDD1 "AT5G66730" [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 1.1e-82, Sum P(4) = 1.1e-82
 Identities = 119/140 (85%), Positives = 135/140 (96%)

Query:     1 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS 60
             MATNRF+CE+CNKGFQR+QNLQLHRRGHNLPWKL+Q++TKEV++KVY+CP   CVHHDPS
Sbjct:    56 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTKEVRKKVYVCPVSGCVHHDPS 115

Query:    61 RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 120
             RALGDLTGIKKH+ RKHGEKKWKCEKCSK+YAVQSDWKAHSK CGT+EY+CDCGTLFSRR
Sbjct:   116 RALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRR 175

Query:   121 DSFITHRAFCDALAQESARH 140
             DSFITHRAFCDALA+ESA++
Sbjct:   176 DSFITHRAFCDALAEESAKN 195

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009937 "regulation of gibberellic acid mediated signaling pathway" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010431 "seed maturation" evidence=IMP

TAIR|locus:2024193 MGP "AT1G03840" [Arabidopsis thaliana (taxid:3702)]

 Score = 712 (255.7 bits), Expect = 1.7e-82, Sum P(3) = 1.7e-82
 Identities = 126/157 (80%), Positives = 145/157 (92%)

Query:     1 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS 60
             MATNRF+CE+C KGFQR+QNLQLHRRGHNLPWKLKQ+T+KEV+++VY+CPE +CVHH P+
Sbjct:    65 MATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPT 124

Query:    61 RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 120
             RALGDLTGIKKH+ RKHGEKKWKCEKC+KRYAVQSDWKAHSKTCGTREYRCDCGT+FSRR
Sbjct:   125 RALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRR 184

Query:   121 DSFITHRAFCDALAQESARHQPSLSAIGSHL--YAST 155
             DSFITHRAFCDALA+E+AR    L+A  SHL  +A+T
Sbjct:   185 DSFITHRAFCDALAEETAR----LNA-ASHLKSFAAT 216

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2078262 AT3G45260 "AT3G45260" [Arabidopsis thaliana (taxid:3702)]

 Score = 710 (255.0 bits), Expect = 1.3e-80, Sum P(3) = 1.3e-80
 Identities = 130/186 (69%), Positives = 152/186 (81%)

Query:     1 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKE-VKRKVYLCPEPTCVHHDP 59
             M TNRFICEVCNKGF+R+QNLQLHRRGHNLPWKLKQ+T KE VK+KVY+CPE TCVHHDP
Sbjct:    63 MTTNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQRTNKEQVKKKVYICPEKTCVHHDP 122

Query:    60 SRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSR 119
             +RALGDLTGIKKH+SRKHGEKKWKC+KCSK+YAV SDWKAHSK CGT+EYRCDCGTLFSR
Sbjct:   123 ARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVMSDWKAHSKICGTKEYRCDCGTLFSR 182

Query:   120 RDSFITHRAFCDALAQESARH---QPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDHH 176
             +DSFITHRAFCDALA+ESAR     P+ + + + L    N+  +  +    QL++     
Sbjct:   183 KDSFITHRAFCDALAEESARFVSVPPAPAYLNNALDVEVNHGNINQNHQQRQLNTTSS-- 240

Query:   177 QTNQSG 182
             Q +Q G
Sbjct:   241 QLDQPG 246

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2204503 AT1G14580 "AT1G14580" [Arabidopsis thaliana (taxid:3702)]

 Score = 744 (267.0 bits), Expect = 1.7e-80, Sum P(2) = 1.7e-80
 Identities = 129/145 (88%), Positives = 141/145 (97%)

Query:     1 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS 60
             MATNRF+CEVCNKGFQREQNLQLHRRGHNLPWKLKQK+ KEV+RKVYLCPEP+CVHHDP+
Sbjct:    77 MATNRFLCEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEVRRKVYLCPEPSCVHHDPA 136

Query:    61 RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 120
             RALGDLTGIKKHY RKHGEKKWKC+KCSKRYAVQSDWKAHSKTCGT+EYRCDCGT+FSRR
Sbjct:   137 RALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTIFSRR 196

Query:   121 DSFITHRAFCDALAQESARHQPSLS 145
             DS+ITHRAFCDAL QESAR+ P++S
Sbjct:   197 DSYITHRAFCDALIQESARN-PTVS 220

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2143543 JKD "AT5G03150" [Arabidopsis thaliana (taxid:3702)]

 Score = 708 (254.3 bits), Expect = 2.2e-80, Sum P(3) = 2.2e-80
 Identities = 127/162 (78%), Positives = 143/162 (88%)

Query:     1 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEV-KRKVYLCPEPTCVHHDP 59
             MATNRF+CE+CNKGFQR+QNLQLHRRGHNLPWKLKQ++ +EV K+KVY+CP  TCVHHD 
Sbjct:    77 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKKVYICPIKTCVHHDA 136

Query:    60 SRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSR 119
             SRALGDLTGIKKHYSRKHGEKKWKCEKCSK+YAVQSDWKAH+KTCGTREY+CDCGTLFSR
Sbjct:   137 SRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSR 196

Query:   120 RDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALG 161
             +DSFITHRAFCDAL +E AR   SLS   ++   ST N+  G
Sbjct:   197 KDSFITHRAFCDALTEEGAR-MSSLS--NNNPVISTTNLNFG 235

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010075 "regulation of meristem growth" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0048364 "root development" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IMP

GO:0045604 "regulation of epidermal cell differentiation" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2167608 NUC "AT5G44160" [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 2.2e-80, Sum P(3) = 2.2e-80
 Identities = 130/184 (70%), Positives = 148/184 (80%)

Query:     1 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS 60
             MATNRF+CEVC KGFQR+QNLQLHRRGHNLPWKLKQ+T+KEV+++VY+CPE TCVHH  S
Sbjct:    61 MATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSS 120

Query:    61 RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 120
             RALGDLTGIKKH+ RKHGEKKW CEKC+KRYAVQSDWKAHSKTCGTREYRCDCGT+FSRR
Sbjct:   121 RALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRR 180

Query:   121 DSFITHRAFCDALAQESAR-----HQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDH 175
             DSFITHRAFCDALA+E+A+     H   L+A G+    + N   L +    P L      
Sbjct:   181 DSFITHRAFCDALAEETAKINAVSHLNGLAAAGAPGSVNLNYQYL-MGTFIPPLQPFVPQ 239

Query:   176 HQTN 179
              QTN
Sbjct:   240 PQTN 243

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0010260 "organ senescence" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2205672 IDD7 "AT1G55110" [Arabidopsis thaliana (taxid:3702)]

 Score = 713 (256.0 bits), Expect = 1.2e-79, Sum P(3) = 1.2e-79
 Identities = 129/181 (71%), Positives = 149/181 (82%)

Query:     1 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEV-KRKVYLCPEPTCVHHDP 59
             MATNRFICEVCNKGFQR+QNLQLH+RGHNLPWKLKQ++ K+V ++KVY+CPEP CVHH P
Sbjct:    87 MATNRFICEVCNKGFQRDQNLQLHKRGHNLPWKLKQRSNKDVVRKKVYVCPEPGCVHHHP 146

Query:    60 SRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSR 119
             SRALGDLTGIKKH+ RKHGEKKWKCEKCSK+YAVQSDWKAH+KTCGT+EY+CDCGTLFSR
Sbjct:   147 SRALGDLTGIKKHFFRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTKEYKCDCGTLFSR 206

Query:   120 RDSFITHRAFCDALAQESARHQPS---LSAIGS-HLYASTNNMALGLSQVGPQLSSIKDH 175
             RDSFITHRAFCDALA+ESAR  P+   + A  S H +       +G S     + S  + 
Sbjct:   207 RDSFITHRAFCDALAEESARAMPNPIMIQASNSPHHHHHQTQQNIGFSSSSQNIISNSNL 266

Query:   176 H 176
             H
Sbjct:   267 H 267

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2101739 IDD2 "AT3G50700" [Arabidopsis thaliana (taxid:3702)]

 Score = 713 (256.0 bits), Expect = 2.4e-79, Sum P(3) = 2.4e-79
 Identities = 121/145 (83%), Positives = 137/145 (94%)

Query:     1 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS 60
             +ATNRF+CE+CNKGFQR+QNLQLHRRGHNLPWKL+QK+ KEVK+KVY+CPE +CVHHDPS
Sbjct:    58 LATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQKSNKEVKKKVYVCPEVSCVHHDPS 117

Query:    61 RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 120
             RALGDLTGIKKH+ RKHGEKKWKC+KCSK+YAVQSDWKAHSK CGT+EY+CDCGTLFSRR
Sbjct:   118 RALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRR 177

Query:   121 DSFITHRAFCDALAQESARHQPSLS 145
             DSFITHRAFCDALA+E+AR   S S
Sbjct:   178 DSFITHRAFCDALAEENARSHHSQS 202

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	577
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.87
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.81
KOG3576	267	consensus Ovo and related transcription factors [T	99.63
KOG3608	467	consensus Zn finger proteins [General function pre	99.55
KOG3608	467	consensus Zn finger proteins [General function pre	99.52
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.44
KOG3576	267	consensus Ovo and related transcription factors [T	99.42
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.39
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.36
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.31
PLN03086	567	PRLI-interacting factor K; Provisional	99.03
PHA00733	128	hypothetical protein	98.88
PLN03086	567	PRLI-interacting factor K; Provisional	98.83
PHA00733	128	hypothetical protein	98.73
KOG3993	500	consensus Transcription factor (contains Zn finger	98.35
KOG3993	500	consensus Transcription factor (contains Zn finger	98.33
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.17
PHA02768	55	hypothetical protein; Provisional	98.16
PHA02768	55	hypothetical protein; Provisional	98.09
COG5189	423	SFP1 Putative transcriptional repressor regulating	98.01
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.76
PHA00616	44	hypothetical protein	97.62
PHA00732	79	hypothetical protein	97.45
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.21
PHA00616	44	hypothetical protein	97.18
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	97.08
PHA00732	79	hypothetical protein	97.06
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	96.98
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.81
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	96.79
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	96.75
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.72
COG5048	467	FOG: Zn-finger [General function prediction only]	96.72
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.63
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	96.62
COG5236	493	Uncharacterized conserved protein, contains RING Z	96.44
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	95.97
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	95.96
KOG1146	1406	consensus Homeobox protein [General function predi	95.92
smart00355	26	ZnF_C2H2 zinc finger.	95.77
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	95.62
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.0
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	94.52
smart00355	26	ZnF_C2H2 zinc finger.	93.94
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	93.94
PRK04860	160	hypothetical protein; Provisional	93.79
COG5048	467	FOG: Zn-finger [General function prediction only]	93.72
PRK04860	160	hypothetical protein; Provisional	93.36
COG5236	493	Uncharacterized conserved protein, contains RING Z	93.25
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	92.2
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	92.1
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	91.66
KOG4124	442	consensus Putative transcriptional repressor regul	91.61
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	90.78
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	90.07
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	90.02
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	89.94
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	89.85
KOG1146	1406	consensus Homeobox protein [General function predi	89.5
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	88.36
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	88.3
KOG4124	442	consensus Putative transcriptional repressor regul	87.07
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	85.11
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	83.46
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	83.22
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	80.99

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.87  E-value=3.9e-23  Score=206.74  Aligned_cols=136  Identities=18%  Similarity=0.399  Sum_probs=126.4

Q ss_pred             CCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCccc
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKW   82 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpy   82 (577)
                      ..+|+|.+|+|.|.+..+|.+|+.+|.          .-..++.+.|+.  |     +|.|.....|+.|+|+|+  -++
T Consensus       128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~----------~~~s~ka~~C~~--C-----~K~YvSmpALkMHirTH~--l~c  188 (279)
T KOG2462|consen  128 HPRYKCPECGKSYSTSSNLSRHKQTHR----------SLDSKKAFSCKY--C-----GKVYVSMPALKMHIRTHT--LPC  188 (279)
T ss_pred             CCceeccccccccccccccchhhcccc----------cccccccccCCC--C-----CceeeehHHHhhHhhccC--CCc
Confidence            357999999999999999999999995          334578899999  9     999999999999999997  689


Q ss_pred             ccCcCCCcccchhhhhhhccc-cCCceeecC-CCCCcCChhHHHHHHHHhccchhhhccCCCCcccccCcccccCccccc
Q 008103           83 KCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMAL  160 (577)
Q Consensus        83 kC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~~~s~L~~H~r~h~~~~~~s~~~~~~l~~~~~~~y~c~~~C~~  160 (577)
                      +|.+|+|.|.+.-.|+.|+|+ +|||||.|. |+|.|..+++|+.|+++|                ...+.|.|.. |.|
T Consensus       189 ~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTH----------------S~~K~~qC~~-C~K  251 (279)
T KOG2462|consen  189 ECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTH----------------SDVKKHQCPR-CGK  251 (279)
T ss_pred             ccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhh----------------cCCccccCcc-hhh
Confidence            999999999999999999999 999999999 999999999999999999                6778999999 999


Q ss_pred             cccccchhhhhhhh
Q 008103          161 GLSQVGPQLSSIKD  174 (577)
Q Consensus       161 ~fs~~ssl~~H~k~  174 (577)
                      .|+.++.|.+|...
T Consensus       252 sFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  252 SFALKSYLNKHSES  265 (279)
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999999999753

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.81  E-value=1.2e-20  Score=189.00  Aligned_cols=108  Identities=26%  Similarity=0.529  Sum_probs=101.9

Q ss_pred             CCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCccc
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKW   82 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpy   82 (577)
                      .+-+.|++|+|.|.+.-.|+.|+|+|+               -+++|.+  |     +|.|...=.|+-|+|+|||||||
T Consensus       159 ~ka~~C~~C~K~YvSmpALkMHirTH~---------------l~c~C~i--C-----GKaFSRPWLLQGHiRTHTGEKPF  216 (279)
T KOG2462|consen  159 KKAFSCKYCGKVYVSMPALKMHIRTHT---------------LPCECGI--C-----GKAFSRPWLLQGHIRTHTGEKPF  216 (279)
T ss_pred             cccccCCCCCceeeehHHHhhHhhccC---------------CCccccc--c-----cccccchHHhhcccccccCCCCc
Confidence            577999999999999999999999996               5788999  8     99999999999999999999999


Q ss_pred             ccCcCCCcccchhhhhhhccc-cCCceeecC-CCCCcCChhHHHHHHHHhcc
Q 008103           83 KCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDA  132 (577)
Q Consensus        83 kC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~~~s~L~~H~r~h~~  132 (577)
                      .|..|+|.|..+++|+.|+++ .+.|+|.|. |+|.|.+++.|.+|...-|-
T Consensus       217 ~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES~C~  268 (279)
T KOG2462|consen  217 SCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSESACL  268 (279)
T ss_pred             cCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhhccc
Confidence            999999999999999999999 678999999 99999999999999887644

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.63  E-value=7.1e-17  Score=155.17  Aligned_cols=110  Identities=27%  Similarity=0.612  Sum_probs=102.8

Q ss_pred             CCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCccc
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKW   82 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpy   82 (577)
                      ...|.|.+|+|.|.-...|.+|++.|.             ..+.|.|..  |     +|.|.+.-.|++|+|+|++.+||
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kch~-------------~vkr~lct~--c-----gkgfndtfdlkrh~rthtgvrpy  174 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKCHS-------------DVKRHLCTF--C-----GKGFNDTFDLKRHTRTHTGVRPY  174 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhhcc-------------HHHHHHHhh--c-----cCcccchhhhhhhhccccCcccc
Confidence            356899999999999999999999996             778899999  9     99999999999999999999999


Q ss_pred             ccCcCCCcccchhhhhhhccc-cC-----------CceeecC-CCCCcCChhHHHHHHHHhcc
Q 008103           83 KCEKCSKRYAVQSDWKAHSKT-CG-----------TREYRCD-CGTLFSRRDSFITHRAFCDA  132 (577)
Q Consensus        83 kC~~C~K~F~sks~L~~H~r~-hg-----------eKpy~C~-Cgk~F~~~s~L~~H~r~h~~  132 (577)
                      +|..|+|.|..+..|..|.+. |+           +|.|.|+ |+..-.+...+..|++.|++
T Consensus       175 kc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp  237 (267)
T KOG3576|consen  175 KCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP  237 (267)
T ss_pred             chhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence            999999999999999999887 74           4789999 99999999999999999865

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.55  E-value=4.5e-15  Score=152.49  Aligned_cols=161  Identities=18%  Similarity=0.320  Sum_probs=94.2

Q ss_pred             CCCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcc
Q 008103            2 ATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKK   81 (577)
Q Consensus         2 ~~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKp   81 (577)
                      +||...|+.|++-|.++..|-.|.+.-+           .....+|.|..  |     .|+|.++..|+.|++.|-  .-
T Consensus       204 ~eKvvACp~Cg~~F~~~tkl~DH~rRqt-----------~l~~n~fqC~~--C-----~KrFaTeklL~~Hv~rHv--n~  263 (467)
T KOG3608|consen  204 NEKVVACPHCGELFRTKTKLFDHLRRQT-----------ELNTNSFQCAQ--C-----FKRFATEKLLKSHVVRHV--NC  263 (467)
T ss_pred             CCeEEecchHHHHhccccHHHHHHHhhh-----------hhcCCchHHHH--H-----HHHHhHHHHHHHHHHHhh--hc
Confidence            5666777777777777777777766543           12344666666  6     666666666666666663  34


Q ss_pred             cccCcCCCcccchhhhhhhccc-c-CCceeecC-CCCCcCChhHHHHHHHHhcc--------chhhhccCCCCccc----
Q 008103           82 WKCEKCSKRYAVQSDWKAHSKT-C-GTREYRCD-CGTLFSRRDSFITHRAFCDA--------LAQESARHQPSLSA----  146 (577)
Q Consensus        82 ykC~~C~K~F~sks~L~~H~r~-h-geKpy~C~-Cgk~F~~~s~L~~H~r~h~~--------~~~~s~~~~~~l~~----  146 (577)
                      |+|+.|+.+....+.|.+|++. | .+|||+|+ |.+.|.+.++|.+|..+|.+        .|.++++....+..    
T Consensus       264 ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r~~~q~~~H~~e  343 (467)
T KOG3608|consen  264 YKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVRTYTQMRRHFLE  343 (467)
T ss_pred             ccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccceecCCCCCcHHHHHHHHHHHHHHH
Confidence            6666666666666666666665 3 34666666 66666666666666665521        12222222111111    


Q ss_pred             ----ccCcccccCccccccccccchhhhhhhhhcCCCCCcc
Q 008103          147 ----IGSHLYASTNNMALGLSQVGPQLSSIKDHHQTNQSGD  183 (577)
Q Consensus       147 ----~~~~~y~c~~~C~~~fs~~ssl~~H~k~hh~~~kp~~  183 (577)
                          ...-+|.|-. |++.|..-.+|-.|+++.|.=.-|+.
T Consensus       344 vhEg~np~~Y~CH~-Cdr~ft~G~~L~~HL~kkH~f~~PsG  383 (467)
T KOG3608|consen  344 VHEGNNPILYACHC-CDRFFTSGKSLSAHLMKKHGFRLPSG  383 (467)
T ss_pred             hccCCCCCceeeec-chhhhccchhHHHHHHHhhcccCCCC
Confidence                2233577766 77777777777777766655444443

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.52  E-value=6.2e-15  Score=151.45  Aligned_cols=173  Identities=18%  Similarity=0.312  Sum_probs=132.0

Q ss_pred             ccc--cccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccc
Q 008103            6 FIC--EVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWK   83 (577)
Q Consensus         6 y~C--~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpyk   83 (577)
                      |.|  +.|+..|.+...|..|+..|..-....+.......+..+.|.|..|     -+.|.+++.|++|++.|++||-..
T Consensus       135 f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~C-----t~~~~~k~~LreH~r~Hs~eKvvA  209 (467)
T KOG3608|consen  135 FRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMC-----TKHMGNKYRLREHIRTHSNEKVVA  209 (467)
T ss_pred             hccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhh-----hhhhccHHHHHHHHHhcCCCeEEe
Confidence            556  6799999999999999998863212221222222345689999888     899999999999999999999999


Q ss_pred             cCcCCCcccchhhhhhhccc---cCCceeecC-CCCCcCChhHHHHHHHHh-----ccchhhhccCCCCccc------cc
Q 008103           84 CEKCSKRYAVQSDWKAHSKT---CGTREYRCD-CGTLFSRRDSFITHRAFC-----DALAQESARHQPSLSA------IG  148 (577)
Q Consensus        84 C~~C~K~F~sks~L~~H~r~---hgeKpy~C~-Cgk~F~~~s~L~~H~r~h-----~~~~~~s~~~~~~l~~------~~  148 (577)
                      |+.|+..|.++..|-.|.+.   -...+|.|. |.|+|.++..|+.|++.|     |+.|+..+.....|..      ..
T Consensus       210 Cp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~ssL~~H~r~rHs~  289 (467)
T KOG3608|consen  210 CPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSASSLTTHIRYRHSK  289 (467)
T ss_pred             cchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChHHHHHHHHhhhcc
Confidence            99999999999999999887   356799999 999999999999999977     5555555554444332      45


Q ss_pred             CcccccCccccccccccchhhhhhhhhcCCCCCccccc
Q 008103          149 SHLYASTNNMALGLSQVGPQLSSIKDHHQTNQSGDILC  186 (577)
Q Consensus       149 ~~~y~c~~~C~~~fs~~ssl~~H~k~hh~~~kp~~c~~  186 (577)
                      .++++|.. |++.|...+.|.+|...|.  +.-|.|..
T Consensus       290 dkpfKCd~-Cd~~c~~esdL~kH~~~HS--~~~y~C~h  324 (467)
T KOG3608|consen  290 DKPFKCDE-CDTRCVRESDLAKHVQVHS--KTVYQCEH  324 (467)
T ss_pred             CCCccccc-hhhhhccHHHHHHHHHhcc--ccceecCC
Confidence            66677776 7777777777777776552  33455555

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.44  E-value=4.8e-14  Score=157.59  Aligned_cols=85  Identities=18%  Similarity=0.352  Sum_probs=63.3

Q ss_pred             ccCcCCCcccchhhhhhhccc-cCCceeecC-CCCCcCChhHHHHHHHHhccchhhhccCCCCcccccCcccccC---cc
Q 008103           83 KCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYAST---NN  157 (577)
Q Consensus        83 kC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~~~s~L~~H~r~h~~~~~~s~~~~~~l~~~~~~~y~c~---~~  157 (577)
                      +|-+|.++..-++.|+.|.|+ +|||||+|+ |++.|.++-.|+.|+-+|....            --.-.+.|.   + 
T Consensus       607 qCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p------------~~R~q~ScP~~~i-  673 (958)
T KOG1074|consen  607 QCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKP------------PARVQFSCPSTFI-  673 (958)
T ss_pred             ceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCc------------cccccccCCchhh-
Confidence            388888888888888888888 788899998 9999988888888888883211            011244555   5 


Q ss_pred             ccccccccchhhhhhhhhcCCCC
Q 008103          158 MALGLSQVGPQLSSIKDHHQTNQ  180 (577)
Q Consensus       158 C~~~fs~~ssl~~H~k~hh~~~k  180 (577)
                      |-+-|...-.|-.|+++|.....
T Consensus       674 c~~kftn~V~lpQhIriH~~~~~  696 (958)
T KOG1074|consen  674 CQKKFTNAVTLPQHIRIHLGGQI  696 (958)
T ss_pred             hcccccccccccceEEeecCCCC
Confidence            77778887778888888764433

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.42  E-value=4.7e-14  Score=135.88  Aligned_cols=122  Identities=22%  Similarity=0.423  Sum_probs=107.8

Q ss_pred             cCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-CCCCcCCh
Q 008103           43 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRR  120 (577)
Q Consensus        43 ~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~~~  120 (577)
                      +...|.|.+  |     +|.|....-|.+|++.|...|.|-|..|+|.|...-+|++|+|+ ++.|||+|. |+|.|..+
T Consensus       114 d~d~ftCrv--C-----gK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqr  186 (267)
T KOG3576|consen  114 DQDSFTCRV--C-----GKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQR  186 (267)
T ss_pred             CCCeeeeeh--h-----hhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhh
Confidence            456799999  9     99999999999999999999999999999999999999999999 899999999 99999999


Q ss_pred             hHHHHHHHHhccc-hhhhccCCCCcccccCcccccCccccccccccchhhhhhhhhcCC
Q 008103          121 DSFITHRAFCDAL-AQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQT  178 (577)
Q Consensus       121 s~L~~H~r~h~~~-~~~s~~~~~~l~~~~~~~y~c~~~C~~~fs~~ssl~~H~k~hh~~  178 (577)
                      -+|..|.+..|.. .++..+.      ...++|.|++ |+..-.....+..|++.||+.
T Consensus       187 csleshl~kvhgv~~~yayke------rr~kl~vced-cg~t~~~~e~~~~h~~~~hp~  238 (267)
T KOG3576|consen  187 CSLESHLKKVHGVQHQYAYKE------RRAKLYVCED-CGYTSERPEVYYLHLKLHHPF  238 (267)
T ss_pred             ccHHHHHHHHcCchHHHHHHH------hhhheeeecc-cCCCCCChhHHHHHHHhcCCC
Confidence            9999999865553 3344333      5678999999 999888888889999988664

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.39  E-value=7.5e-14  Score=153.70  Aligned_cols=106  Identities=25%  Similarity=0.587  Sum_probs=95.6

Q ss_pred             ccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccC-------
Q 008103            6 FICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG-------   78 (577)
Q Consensus         6 y~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htg-------   78 (577)
                      ..|+.|.+.+++...|+.|++..+           ...+.-|.|..  |     .+.|.++..|.+|+.+|.-       
T Consensus       211 ltcpycdrgykrltslkeHikyrh-----------ekne~nfsC~l--C-----sytFAyRtQLErhm~~hkpg~dqa~s  272 (1007)
T KOG3623|consen  211 LTCPYCDRGYKRLTSLKEHIKYRH-----------EKNEPNFSCML--C-----SYTFAYRTQLERHMQLHKPGGDQAIS  272 (1007)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHH-----------hhCCCCCcchh--h-----hhhhhhHHHHHHHHHhhcCCCccccc
Confidence            579999999999999999988643           24567789999  9     9999999999999998862       


Q ss_pred             ------CcccccCcCCCcccchhhhhhhccc-cCCceeecC-CCCCcCChhHHHHHHHH
Q 008103           79 ------EKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAF  129 (577)
Q Consensus        79 ------eKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~~~s~L~~H~r~  129 (577)
                            .++|||.+|+|.|+.+.+|+.|+|+ .|||||.|+ |.|+|...-++..|+-.
T Consensus       273 ltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  273 LTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             ccchhhhccccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccc
Confidence                  4789999999999999999999999 799999999 99999999999999864

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.36  E-value=4.3e-13  Score=150.12  Aligned_cols=105  Identities=24%  Similarity=0.470  Sum_probs=86.0

Q ss_pred             CCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc--
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK--   80 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK--   80 (577)
                      +.|-+|.+|-|+...++.|+.|.|+|+             +|+||+|.+  |     +|+|.++.+|+.|+.+|.-..  
T Consensus       603 TdPNqCiiC~rVlSC~saLqmHyrtHt-------------GERPFkCKi--C-----gRAFtTkGNLkaH~~vHka~p~~  662 (958)
T KOG1074|consen  603 TDPNQCIICLRVLSCPSALQMHYRTHT-------------GERPFKCKI--C-----GRAFTTKGNLKAHMSVHKAKPPA  662 (958)
T ss_pred             CCccceeeeeecccchhhhhhhhhccc-------------CcCcccccc--c-----cchhccccchhhcccccccCccc
Confidence            456789999999999999999999997             999999999  9     999999999999999997543  


Q ss_pred             --ccccC---cCCCcccchhhhhhhccccC-----------Cce---eecC-CCCCcCChhHHHHHH
Q 008103           81 --KWKCE---KCSKRYAVQSDWKAHSKTCG-----------TRE---YRCD-CGTLFSRRDSFITHR  127 (577)
Q Consensus        81 --pykC~---~C~K~F~sks~L~~H~r~hg-----------eKp---y~C~-Cgk~F~~~s~L~~H~  127 (577)
                        +|.|+   +|-+.|...-.|..|+++|-           +..   -.|. |.|.|.....+..++
T Consensus       663 R~q~ScP~~~ic~~kftn~V~lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~  729 (958)
T KOG1074|consen  663 RVQFSCPSTFICQKKFTNAVTLPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQI  729 (958)
T ss_pred             cccccCCchhhhcccccccccccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhh
Confidence              47899   99999999999999999842           111   2466 777776655555553

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.31  E-value=3.7e-13  Score=148.30  Aligned_cols=79  Identities=23%  Similarity=0.639  Sum_probs=69.1

Q ss_pred             cCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-CCCCcCCh
Q 008103           43 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRR  120 (577)
Q Consensus        43 ~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~~~  120 (577)
                      .+..|.|+.  |     .|.|...+.|.+|...|+|.+||+|.+|.|.|+.+.+|+.|+|. .|||||.|+ |+|+|...
T Consensus       891 e~gmyaCDq--C-----DK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHS  963 (1007)
T KOG3623|consen  891 EDGMYACDQ--C-----DKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHS  963 (1007)
T ss_pred             ccccchHHH--H-----HHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccc
Confidence            557788888  8     88888888888998889999999999999999999999999888 788999998 99999888


Q ss_pred             hHHHHHHH
Q 008103          121 DSFITHRA  128 (577)
Q Consensus       121 s~L~~H~r  128 (577)
                      -++..||.
T Consensus       964 GSYSQHMN  971 (1007)
T KOG3623|consen  964 GSYSQHMN  971 (1007)
T ss_pred             cchHhhhc
Confidence            88888875

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.03  E-value=3.7e-10  Score=125.53  Aligned_cols=104  Identities=22%  Similarity=0.491  Sum_probs=87.6

Q ss_pred             CCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCccc
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKW   82 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpy   82 (577)
                      ++.+.|+.|++.|. ...|..|+++|+               ++|.|+   |     ++.+ .+..|..|+.+|..+|++
T Consensus       451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H---------------kpv~Cp---C-----g~~~-~R~~L~~H~~thCp~Kpi  505 (567)
T PLN03086        451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH---------------EPLQCP---C-----GVVL-EKEQMVQHQASTCPLRLI  505 (567)
T ss_pred             ccCccCCCCCCccc-hHHHHHHHHhcC---------------CCccCC---C-----CCCc-chhHHHhhhhccCCCCce
Confidence            46789999999996 678999999874               678997   7     7654 678999999999999999


Q ss_pred             ccCcCCCccc----------chhhhhhhccccCCceeecC-CCCCcCChhHHHHHHHHhcc
Q 008103           83 KCEKCSKRYA----------VQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFITHRAFCDA  132 (577)
Q Consensus        83 kC~~C~K~F~----------sks~L~~H~r~hgeKpy~C~-Cgk~F~~~s~L~~H~r~h~~  132 (577)
                      .|++|++.|.          ....|+.|..+++.+++.|. |++.|..+ .+..|+..+|.
T Consensus       506 ~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        506 TCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             eCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeeeeh-hHHHHHHHhhc
Confidence            9999999985          24589999999999999999 99999776 47888876643

>PHA00733 hypothetical protein

Probab=98.88  E-value=1.4e-09  Score=100.01  Aligned_cols=84  Identities=14%  Similarity=0.271  Sum_probs=70.1

Q ss_pred             cCceeeCCCCCccCCCCCCccCChhhHHhH------hhhccCCcccccCcCCCcccchhhhhhhccccCCceeecC-CCC
Q 008103           43 KRKVYLCPEPTCVHHDPSRALGDLTGIKKH------YSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD-CGT  115 (577)
Q Consensus        43 ~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H------~r~HtgeKpykC~~C~K~F~sks~L~~H~r~hgeKpy~C~-Cgk  115 (577)
                      ..+++.|.+  |     .+.|.....|..|      +.. +.++||+|++|++.|.....|..|++.+ +++|.|+ |++
T Consensus        37 ~~~~~~~~~--~-----~~~~~~~~~l~~~~~l~~~~~~-~~~kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~~CgK  107 (128)
T PHA00733         37 EQKRLIRAV--V-----KTLIYNPQLLDESSYLYKLLTS-KAVSPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCPVCGK  107 (128)
T ss_pred             hhhhHHHHH--H-----hhhccChhhhcchHHHHhhccc-CCCCCccCCCCCCcCCCHHHHHHHHhcC-CcCccCCCCCC
Confidence            568899999  8     6666665555444      333 4589999999999999999999999975 5689999 999


Q ss_pred             CcCChhHHHHHHHHhccchh
Q 008103          116 LFSRRDSFITHRAFCDALAQ  135 (577)
Q Consensus       116 ~F~~~s~L~~H~r~h~~~~~  135 (577)
                      .|.....|.+|++..|.+|.
T Consensus       108 ~F~~~~sL~~H~~~~h~~~~  127 (128)
T PHA00733        108 EFRNTDSTLDHVCKKHNICV  127 (128)
T ss_pred             ccCCHHHHHHHHHHhcCccc
Confidence            99999999999999988774

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.83  E-value=1e-08  Score=114.26  Aligned_cols=137  Identities=17%  Similarity=0.303  Sum_probs=100.9

Q ss_pred             ccccccccccCChHHHHHHHHhcCC-Ccc-----ccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCC
Q 008103            6 FICEVCNKGFQREQNLQLHRRGHNL-PWK-----LKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE   79 (577)
Q Consensus         6 y~C~~CgK~F~~~s~L~~H~r~H~~-p~~-----~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htge   79 (577)
                      -.|+-|.+... ...|..|...... ...     |....+....++.+.|+.  |     ++.|. ...|++|+++|+  
T Consensus       408 V~C~NC~~~i~-l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~--C-----gk~f~-~s~LekH~~~~H--  476 (567)
T PLN03086        408 VECRNCKHYIP-SRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEK--C-----GQAFQ-QGEMEKHMKVFH--  476 (567)
T ss_pred             EECCCCCCccc-hhHHHHHHhhCCCcceeCCcccccceeeccccccCccCCC--C-----CCccc-hHHHHHHHHhcC--
Confidence            46999988655 4667789866542 111     333445555677889999  8     88885 678999999985  


Q ss_pred             cccccCcCCCcccchhhhhhhccc-cCCceeecC-CCCCcCC----------hhHHHHHHHHhccchhhhccCCCCcccc
Q 008103           80 KKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSR----------RDSFITHRAFCDALAQESARHQPSLSAI  147 (577)
Q Consensus        80 KpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~~----------~s~L~~H~r~h~~~~~~s~~~~~~l~~~  147 (577)
                      ++|.|+ |++.+ .+..|..|+++ +.+|++.|. |++.|..          .+.|..|..+|                 
T Consensus       477 kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-----------------  537 (567)
T PLN03086        477 EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-----------------  537 (567)
T ss_pred             CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-----------------
Confidence            889999 99765 66899999988 889999999 9999952          45788888876                 


Q ss_pred             cCcccccCccccccccccchhhhhhhh
Q 008103          148 GSHLYASTNNMALGLSQVGPQLSSIKD  174 (577)
Q Consensus       148 ~~~~y~c~~~C~~~fs~~ssl~~H~k~  174 (577)
                      +.+++.|.. |++.+.... +..|+..
T Consensus       538 G~rt~~C~~-Cgk~Vrlrd-m~~H~~~  562 (567)
T PLN03086        538 GSRTAPCDS-CGRSVMLKE-MDIHQIA  562 (567)
T ss_pred             CCcceEccc-cCCeeeehh-HHHHHHH
Confidence            566788866 887765543 3455543

>PHA00733 hypothetical protein

Probab=98.73  E-value=7e-09  Score=95.48  Aligned_cols=85  Identities=20%  Similarity=0.258  Sum_probs=72.1

Q ss_pred             CCCcccccccccccCChHHHHHH--HHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCC
Q 008103            2 ATNRFICEVCNKGFQREQNLQLH--RRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE   79 (577)
Q Consensus         2 ~~kpy~C~~CgK~F~~~s~L~~H--~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htge   79 (577)
                      +.++++|.+|.+.|.....|..|  ++.|.         .. ..+++|.|+.  |     ++.|.....|..|++.|  +
T Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~---------~~-~~~kPy~C~~--C-----gk~Fss~s~L~~H~r~h--~   97 (128)
T PHA00733         37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLL---------TS-KAVSPYVCPL--C-----LMPFSSSVSLKQHIRYT--E   97 (128)
T ss_pred             hhhhHHHHHHhhhccChhhhcchHHHHhhc---------cc-CCCCCccCCC--C-----CCcCCCHHHHHHHHhcC--C
Confidence            35789999999999998888887  33331         12 3578999999  9     99999999999999987  4


Q ss_pred             cccccCcCCCcccchhhhhhhccc-cC
Q 008103           80 KKWKCEKCSKRYAVQSDWKAHSKT-CG  105 (577)
Q Consensus        80 KpykC~~C~K~F~sks~L~~H~r~-hg  105 (577)
                      ++|+|++|++.|.....|.+|++. |+
T Consensus        98 ~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         98 HSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             cCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            689999999999999999999987 64

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.35  E-value=2e-07  Score=98.81  Aligned_cols=83  Identities=18%  Similarity=0.476  Sum_probs=69.7

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccccCC------------------
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGT------------------  106 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~hge------------------  106 (577)
                      .-|.|..  |     ...|.+.-.|.+|...-.-...|+|++|+|+|.-..+|..|.|||.-                  
T Consensus       266 GdyiCqL--C-----K~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~  338 (500)
T KOG3993|consen  266 GDYICQL--C-----KEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVET  338 (500)
T ss_pred             HHHHHHH--H-----HHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhh
Confidence            3489999  8     88999999999997654444459999999999999999999998621                  


Q ss_pred             ----------------ceeecC-CCCCcCChhHHHHHHHHhccch
Q 008103          107 ----------------REYRCD-CGTLFSRRDSFITHRAFCDALA  134 (577)
Q Consensus       107 ----------------Kpy~C~-Cgk~F~~~s~L~~H~r~h~~~~  134 (577)
                                      -.|.|. |+|.|++...|++|+.+|+...
T Consensus       339 rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~  383 (500)
T KOG3993|consen  339 RAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAP  383 (500)
T ss_pred             hhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccc
Confidence                            138999 9999999999999999996643

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.33  E-value=7.9e-08  Score=101.74  Aligned_cols=153  Identities=18%  Similarity=0.278  Sum_probs=104.0

Q ss_pred             ccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccC-------
Q 008103            6 FICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG-------   78 (577)
Q Consensus         6 y~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htg-------   78 (577)
                      |+|..|...|.+...|.+|+-...             -..-|+|++  |     +|.|....+|..|.|+|.-       
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~RI-------------V~vEYrCPE--C-----~KVFsCPANLASHRRWHKPR~eaa~a  327 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPRI-------------VHVEYRCPE--C-----DKVFSCPANLASHRRWHKPRPEAAKA  327 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCee-------------EEeeecCCc--c-----cccccCchhhhhhhcccCCchhhhhc
Confidence            899999999999999999864321             235699999  9     9999999999999999852       


Q ss_pred             -C-------------------------cccccCcCCCcccchhhhhhhccccCCce------------------eecC-C
Q 008103           79 -E-------------------------KKWKCEKCSKRYAVQSDWKAHSKTCGTRE------------------YRCD-C  113 (577)
Q Consensus        79 -e-------------------------KpykC~~C~K~F~sks~L~~H~r~hgeKp------------------y~C~-C  113 (577)
                       .                         --|.|.+|+|.|.++..|++|+.+|.+++                  +.|+ |
T Consensus       328 ~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~  407 (500)
T KOG3993|consen  328 GSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAV  407 (500)
T ss_pred             CCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhccccccccccc
Confidence             1                         13889999999999999999987742211                  3455 6


Q ss_pred             CCCcCChhHHHHHHHHh-----ccchhhhccC---CCCc-----ccccCcccccCccccccccccchhhhhhhhhcCCC
Q 008103          114 GTLFSRRDSFITHRAFC-----DALAQESARH---QPSL-----SAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQTN  179 (577)
Q Consensus       114 gk~F~~~s~L~~H~r~h-----~~~~~~s~~~---~~~l-----~~~~~~~y~c~~~C~~~fs~~ssl~~H~k~hh~~~  179 (577)
                      ...+...+.--.|..++     +..+.+....   ....     ..+..+.+.|++ |.-.|...-.|.+|+.+-|..+
T Consensus       408 a~h~~a~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky-~~atfyss~~ltrhin~~Hpse  485 (500)
T KOG3993|consen  408 ATHSSASDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKY-CPATFYSSPGLTRHINKCHPSE  485 (500)
T ss_pred             ccccccccccccceeeeeccccccCCCCCCCCcccCCCCCccccccchhhcccccc-chHhhhcCcchHhHhhhcChHH
Confidence            66665554433333332     1111111111   0000     014456788886 8888888888888887765544

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.17  E-value=7.7e-07  Score=59.53  Aligned_cols=26  Identities=31%  Similarity=0.797  Sum_probs=23.6

Q ss_pred             hHHhHhhhccCCcccccCcCCCcccc
Q 008103           68 GIKKHYSRKHGEKKWKCEKCSKRYAV   93 (577)
Q Consensus        68 ~Lk~H~r~HtgeKpykC~~C~K~F~s   93 (577)
                      +|++|+++|+++|||+|++|++.|..
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            48899999999999999999999863

...

>PHA02768 hypothetical protein; Provisional

Probab=98.16  E-value=9e-07  Score=69.48  Aligned_cols=44  Identities=16%  Similarity=0.376  Sum_probs=34.6

Q ss_pred             eeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhh
Q 008103           46 VYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWK   98 (577)
Q Consensus        46 py~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~   98 (577)
                      -|.|+.  |     +|.|.....|.+|+++|+  |+|+|..|+|.|.+.+.|.
T Consensus         5 ~y~C~~--C-----GK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPI--C-----GEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcch--h-----CCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            367888  7     888888888888888887  6788888888887776664

>PHA02768 hypothetical protein; Provisional

Probab=98.09  E-value=2e-06  Score=67.56  Aligned_cols=46  Identities=17%  Similarity=0.317  Sum_probs=40.1

Q ss_pred             CCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHH
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIK   70 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk   70 (577)
                      ---|+|++|+|.|.+..+|..|+++|+               ++|+|..  |     +|.|...+.|.
T Consensus         3 ~~~y~C~~CGK~Fs~~~~L~~H~r~H~---------------k~~kc~~--C-----~k~f~~~s~l~   48 (55)
T PHA02768          3 LLGYECPICGEIYIKRKSMITHLRKHN---------------TNLKLSN--C-----KRISLRTGEYI   48 (55)
T ss_pred             ccccCcchhCCeeccHHHHHHHHHhcC---------------CcccCCc--c-----cceecccceeE
Confidence            346999999999999999999999995               5899998  8     99998777654

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=98.01  E-value=2.1e-06  Score=88.20  Aligned_cols=29  Identities=28%  Similarity=0.575  Sum_probs=24.4

Q ss_pred             ccCceeeCCCCCccCCCCCCccCChhhHHhHhhh
Q 008103           42 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSR   75 (577)
Q Consensus        42 ~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~   75 (577)
                      .++|||+|++++|     .|.|+....|+.|+..
T Consensus       345 ~d~KpykCpV~gC-----~K~YknqnGLKYH~lh  373 (423)
T COG5189         345 KDGKPYKCPVEGC-----NKKYKNQNGLKYHMLH  373 (423)
T ss_pred             ecCceecCCCCCc-----hhhhccccchhhhhhc
Confidence            3468999999888     8999999999998764

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.76  E-value=6e-06  Score=85.01  Aligned_cols=51  Identities=29%  Similarity=0.643  Sum_probs=45.5

Q ss_pred             CCcccccCc--CCCcccchhhhhhhccc-c-------------------CCceeecC-CCCCcCChhHHHHHHH
Q 008103           78 GEKKWKCEK--CSKRYAVQSDWKAHSKT-C-------------------GTREYRCD-CGTLFSRRDSFITHRA  128 (577)
Q Consensus        78 geKpykC~~--C~K~F~sks~L~~H~r~-h-------------------geKpy~C~-Cgk~F~~~s~L~~H~r  128 (577)
                      ++|||+|++  |+|.|+....|+.|+.. |                   ..|||+|+ |+|+|+...-|+.|++
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            359999988  99999999999999876 5                   34999999 9999999999998875

>PHA00616 hypothetical protein

Probab=97.62  E-value=2.3e-05  Score=58.88  Aligned_cols=34  Identities=15%  Similarity=0.251  Sum_probs=30.9

Q ss_pred             cccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCC
Q 008103            5 RFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE   51 (577)
Q Consensus         5 py~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~   51 (577)
                      ||+|+.||+.|..++.|.+|++.|+             +++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~h-------------g~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVH-------------KQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhc-------------CCCccceeE
Confidence            7999999999999999999999997             778888764

>PHA00732 hypothetical protein

Probab=97.45  E-value=9.8e-05  Score=62.58  Aligned_cols=49  Identities=20%  Similarity=0.500  Sum_probs=32.5

Q ss_pred             cccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccC
Q 008103            5 RFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG   78 (577)
Q Consensus         5 py~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htg   78 (577)
                      ||+|++|++.|.+...|+.|++.++               .++.|+.  |     ++.|.   .|..|++.+.+
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H---------------~~~~C~~--C-----gKsF~---~l~~H~~~~~~   49 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNH---------------TLTKCPV--C-----NKSYR---RLNQHFYSQYD   49 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhccc---------------CCCccCC--C-----CCEeC---ChhhhhcccCC
Confidence            5778888888888888887776432               1246777  7     77776   46677765543

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.21  E-value=0.00016  Score=46.35  Aligned_cols=23  Identities=39%  Similarity=0.899  Sum_probs=21.7

Q ss_pred             ccccccccccCChHHHHHHHHhc
Q 008103            6 FICEVCNKGFQREQNLQLHRRGH   28 (577)
Q Consensus         6 y~C~~CgK~F~~~s~L~~H~r~H   28 (577)
                      |+|++|++.|.++..|+.|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PHA00616 hypothetical protein

Probab=97.18  E-value=0.00012  Score=54.99  Aligned_cols=39  Identities=18%  Similarity=0.334  Sum_probs=30.9

Q ss_pred             eeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcc
Q 008103           46 VYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRY   91 (577)
Q Consensus        46 py~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F   91 (577)
                      ||+|+.  |     ++.|..++.|.+|++.|++++++.|++--..|
T Consensus         1 pYqC~~--C-----G~~F~~~s~l~~H~r~~hg~~~~~~~~~y~~f   39 (44)
T PHA00616          1 MYQCLR--C-----GGIFRKKKEVIEHLLSVHKQNKLTLEYFYIYF   39 (44)
T ss_pred             CCccch--h-----hHHHhhHHHHHHHHHHhcCCCccceeEEEEEE
Confidence            578888  8     88888888888888888888888887643333

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.00058  Score=77.66  Aligned_cols=114  Identities=21%  Similarity=0.372  Sum_probs=75.3

Q ss_pred             cccccccccc---------------CChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCC----CCCCccCCh
Q 008103            6 FICEVCNKGF---------------QREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHH----DPSRALGDL   66 (577)
Q Consensus         6 y~C~~CgK~F---------------~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~----~~~k~F~~~   66 (577)
                      +.|.+|.+.|               .....|+.|+..-+               +.+.|.+  |.+.    .+.+..-+.
T Consensus       100 ~~C~~C~~~~~~~~~~~~~~~c~~~~s~~~Lk~H~~~~H---------------~~~~c~l--C~~~~kif~~e~k~Yt~  162 (669)
T KOG2231|consen  100 HSCHICDRRFRALYNKKECLHCTEFKSVENLKNHMRDQH---------------KLHLCSL--CLQNLKIFINERKLYTR  162 (669)
T ss_pred             hhcCccccchhhhcccCCCccccchhHHHHHHHHHHHhh---------------hhhcccc--ccccceeeeeeeehehH
Confidence            4567776666               37788999985433               3344555  3211    112334456


Q ss_pred             hhHHhHhhhcc-CCc----ccccCcCCCcccchhhhhhhccccCCceeecC----CCCCcCChhHHHHHHHHhccchhh
Q 008103           67 TGIKKHYSRKH-GEK----KWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD----CGTLFSRRDSFITHRAFCDALAQE  136 (577)
Q Consensus        67 s~Lk~H~r~Ht-geK----pykC~~C~K~F~sks~L~~H~r~hgeKpy~C~----Cgk~F~~~s~L~~H~r~h~~~~~~  136 (577)
                      ..|..|+..-. +++    .-.|..|...|.....|.+|++.+.+-.+.|+    |...|...+.|..|-|..|.+|.+
T Consensus       163 ~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR~~HflCE~  241 (669)
T KOG2231|consen  163 AELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFRKGHFLCEE  241 (669)
T ss_pred             HHHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhccceeheeecCcccccchhcccchHHHHHhhhcCccccc
Confidence            67778876422 222    24699999999999999999998434444552    667889999999999988776653

>PHA00732 hypothetical protein

Probab=97.06  E-value=0.00042  Score=58.73  Aligned_cols=45  Identities=29%  Similarity=0.562  Sum_probs=32.9

Q ss_pred             eeeCCCCCccCCCCCCccCChhhHHhHhhh-ccCCcccccCcCCCcccchhhhhhhccc
Q 008103           46 VYLCPEPTCVHHDPSRALGDLTGIKKHYSR-KHGEKKWKCEKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        46 py~C~~~~C~~~~~~k~F~~~s~Lk~H~r~-HtgeKpykC~~C~K~F~sks~L~~H~r~  103 (577)
                      ||.|+.  |     ++.|.....|++|++. |.   +++|++|++.|.   .|..|.++
T Consensus         1 py~C~~--C-----gk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPI--C-----GFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCC--C-----CCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhcc
Confidence            467777  7     8888888888888874 54   357888888886   46677755

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=96.98  E-value=0.00087  Score=52.48  Aligned_cols=52  Identities=27%  Similarity=0.520  Sum_probs=32.8

Q ss_pred             cccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhcc
Q 008103            5 RFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKH   77 (577)
Q Consensus         5 py~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Ht   77 (577)
                      -|.|+.|++ ..+...|..|....+.           ...+.+.||+  |     .+.+.  .+|.+|+..++
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~-----------~~~~~v~CPi--C-----~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHR-----------SESKNVVCPI--C-----SSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCc-----------CCCCCccCCC--c-----hhhhh--hHHHHHHHHhc
Confidence            478888888 4556778888665431           1335678888  7     44433  36777776654

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.81  E-value=0.00052  Score=58.74  Aligned_cols=23  Identities=22%  Similarity=0.564  Sum_probs=0.0

Q ss_pred             cccccccccCChHHHHHHHHhcC
Q 008103            7 ICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         7 ~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      +|..|+..|.+...|..|+...+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H   23 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKH   23 (100)
T ss_dssp             -----------------------
T ss_pred             Ccccccccccccccccccccccc
Confidence            58888888888888888876543

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=96.79  E-value=0.00068  Score=45.29  Aligned_cols=25  Identities=40%  Similarity=0.832  Sum_probs=22.1

Q ss_pred             HHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccC
Q 008103           20 NLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALG   64 (577)
Q Consensus        20 ~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~   64 (577)
                      +|.+|+++|+             +++||+|+.  |     ++.|.
T Consensus         1 ~l~~H~~~H~-------------~~k~~~C~~--C-----~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHT-------------GEKPYKCPY--C-----GKSFS   25 (26)
T ss_dssp             HHHHHHHHHS-------------SSSSEEESS--S-----SEEES
T ss_pred             CHHHHhhhcC-------------CCCCCCCCC--C-----cCeeC
Confidence            5889999986             999999999  9     88886

...

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=96.75  E-value=0.0012  Score=51.61  Aligned_cols=47  Identities=23%  Similarity=0.500  Sum_probs=24.6

Q ss_pred             eeCCCCCccCCCCCCccCChhhHHhHhhhc-cCC-cccccCcCCCcccchhhhhhhccc
Q 008103           47 YLCPEPTCVHHDPSRALGDLTGIKKHYSRK-HGE-KKWKCEKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        47 y~C~~~~C~~~~~~k~F~~~s~Lk~H~r~H-tge-KpykC~~C~K~F~sks~L~~H~r~  103 (577)
                      |.||+  |     ++ ..+...|.+|.... ..+ +.+.|++|.+.+.  .+|..|++.
T Consensus         3 f~CP~--C-----~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~   51 (54)
T PF05605_consen    3 FTCPY--C-----GK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNS   51 (54)
T ss_pred             cCCCC--C-----CC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHH
Confidence            56666  6     55 34455666665543 222 3466666665433  255555544

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.72  E-value=0.00089  Score=42.56  Aligned_cols=24  Identities=38%  Similarity=0.893  Sum_probs=20.4

Q ss_pred             ccccccccccCChHHHHHHHHhcC
Q 008103            6 FICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         6 y~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      |+|++|++.|.++..|+.|+++|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            789999999999999999999873

...

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=96.72  E-value=0.00059  Score=71.90  Aligned_cols=139  Identities=17%  Similarity=0.198  Sum_probs=85.0

Q ss_pred             CcccccccccccCChHHHHHHHH--hcCCCccccccccccccC--ceeeCCCCCccCCCCCCccCChhhHHhHhhhccCC
Q 008103            4 NRFICEVCNKGFQREQNLQLHRR--GHNLPWKLKQKTTKEVKR--KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE   79 (577)
Q Consensus         4 kpy~C~~CgK~F~~~s~L~~H~r--~H~~p~~~~~h~~~~~~e--kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htge   79 (577)
                      .++.|..|.+.|.+...|.+|.+  .|.             .+  +++.|++..|     .+.|.....++.|..+|+..
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~-------------~~~~~~~~~p~~~~-----~~~~~~~~~~~~~~~~~~~~  349 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHS-------------GESLKPFSCPYSLC-----GKLFSRNDALKRHILLHTSI  349 (467)
T ss_pred             cCCCCccccCCccccccccccccccccc-------------cccCCceeeeccCC-----CccccccccccCCcccccCC
Confidence            36777788888888888877777  554             55  7777773226     78888888888888888777


Q ss_pred             cccccCc--CCCcccchhhhh----hh-ccc-cCCceeecC---CCCCcCChhHHHHHHHHhccchhhhccCCCCccccc
Q 008103           80 KKWKCEK--CSKRYAVQSDWK----AH-SKT-CGTREYRCD---CGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIG  148 (577)
Q Consensus        80 KpykC~~--C~K~F~sks~L~----~H-~r~-hgeKpy~C~---Cgk~F~~~s~L~~H~r~h~~~~~~s~~~~~~l~~~~  148 (577)
                      ++++|..  |.+.+.....-.    .+ ... ...+.+.|.   |-+.+.+...+..|...+..              ..
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~  415 (467)
T COG5048         350 SPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLS--------------FR  415 (467)
T ss_pred             CccccccccCccccccccCCCCccchhhccCccCCccccccccchhhhhccccccccccccccc--------------cC
Confidence            7776644  444444433311    11 111 445566665   66666666666666555521              11


Q ss_pred             CcccccCccccccccccchhhhhhhhh
Q 008103          149 SHLYASTNNMALGLSQVGPQLSSIKDH  175 (577)
Q Consensus       149 ~~~y~c~~~C~~~fs~~ssl~~H~k~h  175 (577)
                      ...+.+.. |.+.+...-.+..|++.+
T Consensus       416 ~~~~~~~~-~~~~~~~~~~~~~~~~~~  441 (467)
T COG5048         416 PYNCKNPP-CSKSFNRHYNLIPHKKIH  441 (467)
T ss_pred             CcCCCCCc-chhhccCccccccccccc
Confidence            22333334 667777777777776665

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.63  E-value=0.00099  Score=44.37  Aligned_cols=25  Identities=36%  Similarity=0.727  Sum_probs=23.6

Q ss_pred             cccccccccccCChHHHHHHHHhcC
Q 008103            5 RFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         5 py~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      ||+|.+|++.|.+...|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            6999999999999999999999884

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.62  E-value=0.0013  Score=42.12  Aligned_cols=22  Identities=32%  Similarity=0.748  Sum_probs=15.0

Q ss_pred             eecC-CCCCcCChhHHHHHHHHh
Q 008103          109 YRCD-CGTLFSRRDSFITHRAFC  130 (577)
Q Consensus       109 y~C~-Cgk~F~~~s~L~~H~r~h  130 (577)
                      |.|+ |++.|.++..|.+|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            5676 777777777777776653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.44  E-value=0.005  Score=64.56  Aligned_cols=138  Identities=14%  Similarity=0.280  Sum_probs=73.0

Q ss_pred             ccccc--cccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCcc------CChhhHHhHhhhcc
Q 008103            6 FICEV--CNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRAL------GDLTGIKKHYSRKH   77 (577)
Q Consensus         6 y~C~~--CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F------~~~s~Lk~H~r~Ht   77 (577)
                      |.|+.  |.........|+.|.+..+               ..+.|.+  |+.+  .+.|      -++..|..|...-.
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H---------------~~~~C~~--C~~n--Kk~F~~E~~lF~~~~Lr~H~~~G~  212 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQH---------------GFVLCSE--CIGN--KKDFWNEIRLFRSSTLRDHKNGGL  212 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhc---------------CcEEhHh--hhcC--cccCccceeeeecccccccccCCc
Confidence            66765  6666666677777877643               2344544  4211  1222      23445555554433


Q ss_pred             CCccc----ccCcCCCcccchhhhhhhccccCCceeecC-C----CCCcCChhHHHHHHHHhccchhhhccCCCCccccc
Q 008103           78 GEKKW----KCEKCSKRYAVQSDWKAHSKTCGTREYRCD-C----GTLFSRRDSFITHRAFCDALAQESARHQPSLSAIG  148 (577)
Q Consensus        78 geKpy----kC~~C~K~F~sks~L~~H~r~hgeKpy~C~-C----gk~F~~~s~L~~H~r~h~~~~~~s~~~~~~l~~~~  148 (577)
                      .+.-|    .|..|.+.|..-..|.+|.|.-.|+.|.|+ -    ..-|.....|.+|.+.-|-.|.             
T Consensus       213 ~e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~~hy~ct-------------  279 (493)
T COG5236         213 EEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFRNAHYCCT-------------  279 (493)
T ss_pred             cccCcCCCchhhhccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhhcCceEEE-------------
Confidence            33222    377777777777777777776445666665 2    2336666677777653322111             


Q ss_pred             CcccccCccccccccccchhhhhhhhhcC
Q 008103          149 SHLYASTNNMALGLSQVGPQLSSIKDHHQ  177 (577)
Q Consensus       149 ~~~y~c~~~C~~~fs~~ssl~~H~k~hh~  177 (577)
                        .-.|.++--..|.....|+.|+...|.
T Consensus       280 --~qtc~~~k~~vf~~~~el~~h~~~~h~  306 (493)
T COG5236         280 --FQTCRVGKCYVFPYHTELLEHLTRFHK  306 (493)
T ss_pred             --EEEEecCcEEEeccHHHHHHHHHHHhh
Confidence              001112122346667777888766554

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=95.97  E-value=0.0058  Score=38.72  Aligned_cols=22  Identities=23%  Similarity=0.656  Sum_probs=13.4

Q ss_pred             eecC-CCCCcCChhHHHHHHHHh
Q 008103          109 YRCD-CGTLFSRRDSFITHRAFC  130 (577)
Q Consensus       109 y~C~-Cgk~F~~~s~L~~H~r~h  130 (577)
                      |.|+ |++.|.++..|.+|++.|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            5666 777777777777776655

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=95.96  E-value=0.0029  Score=42.11  Aligned_cols=24  Identities=29%  Similarity=0.650  Sum_probs=16.2

Q ss_pred             eeecC-CCCCcCChhHHHHHHHHhc
Q 008103          108 EYRCD-CGTLFSRRDSFITHRAFCD  131 (577)
Q Consensus       108 py~C~-Cgk~F~~~s~L~~H~r~h~  131 (577)
                      ||.|+ |++.|.....|.+|++.|+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            46676 7777777777777766654

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=95.92  E-value=0.0054  Score=73.70  Aligned_cols=77  Identities=18%  Similarity=0.294  Sum_probs=51.5

Q ss_pred             cCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-CCCCcCCh
Q 008103           43 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRR  120 (577)
Q Consensus        43 ~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~~~  120 (577)
                      ..+.|+|+.  |     .+.|++...|..|+|..+-+-.-  .+|. .+.....+.+=... .+.++|.|+ |...+..+
T Consensus       462 ~~kt~~cpk--c-----~~~yk~a~~L~vhmRskhp~~~~--~~c~-~gq~~~~~arg~~~~~~~~p~~C~~C~~stttn  531 (1406)
T KOG1146|consen  462 FFKTLKCPK--C-----NWHYKLAQTLGVHMRSKHPESQS--AYCK-AGQNHPRLARGEVYRCPGKPYPCRACNYSTTTN  531 (1406)
T ss_pred             ccccccCCc--c-----chhhhhHHHhhhcccccccccch--hHhH-hccccccccccccccCCCCcccceeeeeeeecc
Confidence            448899999  8     89999999999999975533211  3331 11111111111111 566899999 99999999


Q ss_pred             hHHHHHHHH
Q 008103          121 DSFITHRAF  129 (577)
Q Consensus       121 s~L~~H~r~  129 (577)
                      -.|.+|+..
T Consensus       532 g~LsihlqS  540 (1406)
T KOG1146|consen  532 GNLSIHLQS  540 (1406)
T ss_pred             hHHHHHHHH
Confidence            999999874

>smart00355 ZnF_C2H2 zinc finger

Probab=95.77  E-value=0.0071  Score=38.70  Aligned_cols=24  Identities=33%  Similarity=0.685  Sum_probs=22.3

Q ss_pred             ccccccccccCChHHHHHHHHhcC
Q 008103            6 FICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         6 y~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      |+|.+|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            789999999999999999999774

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=95.62  E-value=0.0077  Score=51.43  Aligned_cols=72  Identities=18%  Similarity=0.340  Sum_probs=21.1

Q ss_pred             eCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccccCCceeecC-CCCCcCChhHHHHH
Q 008103           48 LCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFITH  126 (577)
Q Consensus        48 ~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~hgeKpy~C~-Cgk~F~~~s~L~~H  126 (577)
                      +|..  |     +..|.....|..|+...++-..   . ..+.+.....+..+.+..-...+.|. |++.|.....|..|
T Consensus         1 ~C~~--C-----~~~f~~~~~l~~H~~~~H~~~~---~-~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~H   69 (100)
T PF12756_consen    1 QCLF--C-----DESFSSVDDLLQHMKKKHGFDI---P-DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEH   69 (100)
T ss_dssp             -----------------------------------------------------------SSEEBSSSS-EESSHHHHHHH
T ss_pred             Cccc--c-----cccccccccccccccccccccc---c-cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHH
Confidence            3777  7     8999999999999987665321   1 11222233444444444333479999 99999999999999


Q ss_pred             HHHh
Q 008103          127 RAFC  130 (577)
Q Consensus       127 ~r~h  130 (577)
                      ++.+
T Consensus        70 m~~~   73 (100)
T PF12756_consen   70 MRSK   73 (100)
T ss_dssp             HHHT
T ss_pred             HcCc
Confidence            9975

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.00  E-value=0.0099  Score=46.07  Aligned_cols=31  Identities=13%  Similarity=0.226  Sum_probs=17.0

Q ss_pred             CCcccccCcCCCcccchhhhhhhccc-cCCce
Q 008103           78 GEKKWKCEKCSKRYAVQSDWKAHSKT-CGTRE  108 (577)
Q Consensus        78 geKpykC~~C~K~F~sks~L~~H~r~-hgeKp  108 (577)
                      .++|-.|++|+..+.+..+|++|+++ |+.||
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            35666777777777777777777766 66654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=94.52  E-value=0.017  Score=37.60  Aligned_cols=23  Identities=43%  Similarity=0.986  Sum_probs=21.4

Q ss_pred             ccccccccccCChHHHHHHHHhc
Q 008103            6 FICEVCNKGFQREQNLQLHRRGH   28 (577)
Q Consensus         6 y~C~~CgK~F~~~s~L~~H~r~H   28 (577)
                      |.|++|++.|.++..|+.|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            78999999999999999999865

>smart00355 ZnF_C2H2 zinc finger

Probab=93.94  E-value=0.043  Score=34.91  Aligned_cols=22  Identities=32%  Similarity=0.825  Sum_probs=17.4

Q ss_pred             eecC-CCCCcCChhHHHHHHHHh
Q 008103          109 YRCD-CGTLFSRRDSFITHRAFC  130 (577)
Q Consensus       109 y~C~-Cgk~F~~~s~L~~H~r~h  130 (577)
                      |.|. |++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            5687 888888888888888765

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.94  E-value=0.05  Score=62.37  Aligned_cols=110  Identities=13%  Similarity=0.208  Sum_probs=65.0

Q ss_pred             ccCChhhHHhHhhhccCCcccccCcC---------CCcccchhhhhhhccc--cCCce----eecC-CCCCcCChhHHHH
Q 008103           62 ALGDLTGIKKHYSRKHGEKKWKCEKC---------SKRYAVQSDWKAHSKT--CGTRE----YRCD-CGTLFSRRDSFIT  125 (577)
Q Consensus        62 ~F~~~s~Lk~H~r~HtgeKpykC~~C---------~K~F~sks~L~~H~r~--hgeKp----y~C~-Cgk~F~~~s~L~~  125 (577)
                      .|...-.|+.|++..++  .+.|.+|         .....++..|..|+..  .+++-    -.|. |...|.....|.+
T Consensus       123 ~~~s~~~Lk~H~~~~H~--~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~r  200 (669)
T KOG2231|consen  123 EFKSVENLKNHMRDQHK--LHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYR  200 (669)
T ss_pred             chhHHHHHHHHHHHhhh--hhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhhccHHHHHH
Confidence            34477889999964332  3566554         2223456678888876  43322    3589 9999999999999


Q ss_pred             HHHHhccchhhh---------ccCCCCccc-ccCcccccCcc-cccc-ccccchhhhhhh
Q 008103          126 HRAFCDALAQES---------ARHQPSLSA-IGSHLYASTNN-MALG-LSQVGPQLSSIK  173 (577)
Q Consensus       126 H~r~h~~~~~~s---------~~~~~~l~~-~~~~~y~c~~~-C~~~-fs~~ssl~~H~k  173 (577)
                      |++++|..|...         +..-..|.. .....|.|.+. |... |...-.+..+++
T Consensus       201 H~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR~~HflCE~~~C~~~~f~~~~~~ei~lk  260 (669)
T KOG2231|consen  201 HLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFRKGHFLCEEEFCRTKKFYVAFELEIELK  260 (669)
T ss_pred             hhccceeheeecCcccccchhcccchHHHHHhhhcCccccccccccceeeehhHHHHHHH
Confidence            999765443332         122222222 45567888742 4332 333334445555

>PRK04860 hypothetical protein; Provisional

Probab=93.79  E-value=0.035  Score=53.28  Aligned_cols=35  Identities=29%  Similarity=0.757  Sum_probs=17.7

Q ss_pred             ccccCcCCCcccchhhhhhhccc-cCCceeecC-CCCCcCC
Q 008103           81 KWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSR  119 (577)
Q Consensus        81 pykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~~  119 (577)
                      +|+|. |++   ....+.+|.++ .++++|.|. |++.|..
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF  155 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence            35554 554   33444555555 455555555 5555543

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=93.72  E-value=0.027  Score=59.29  Aligned_cols=115  Identities=20%  Similarity=0.250  Sum_probs=69.2

Q ss_pred             Cccccc--ccccccCChHHHHHHHHhcCCCccccc----------------------cccccccCceeeCCCCCccCCCC
Q 008103            4 NRFICE--VCNKGFQREQNLQLHRRGHNLPWKLKQ----------------------KTTKEVKRKVYLCPEPTCVHHDP   59 (577)
Q Consensus         4 kpy~C~--~CgK~F~~~s~L~~H~r~H~~p~~~~~----------------------h~~~~~~ekpy~C~~~~C~~~~~   59 (577)
                      +|+.|+  .|++.|.+...+..|...|......+.                      ........+.+.|....|     
T Consensus       320 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  394 (467)
T COG5048         320 KPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSC-----  394 (467)
T ss_pred             CceeeeccCCCccccccccccCCcccccCCCccccccccCccccccccCCCCccchhhccCccCCccccccccch-----
Confidence            899999  799999999999999999972211100                      001111233444444444     


Q ss_pred             CCccCChhhHHhHhhhccCCc--ccccCcCCCcccchhhhhhhccccCC-ceeecCCCCCcCChhHH
Q 008103           60 SRALGDLTGIKKHYSRKHGEK--KWKCEKCSKRYAVQSDWKAHSKTCGT-REYRCDCGTLFSRRDSF  123 (577)
Q Consensus        60 ~k~F~~~s~Lk~H~r~HtgeK--pykC~~C~K~F~sks~L~~H~r~hge-Kpy~C~Cgk~F~~~s~L  123 (577)
                      .+.+.....+..|...|...+  .++|..|.+.|.....+..|++.+.. .++.|.+-+.|.....+
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (467)
T COG5048         395 IRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDLDL  461 (467)
T ss_pred             hhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccccCCceeeccccccchhhhh
Confidence            566666666666666666555  34455677777777777777777333 34444444444444433

>PRK04860 hypothetical protein; Provisional

Probab=93.36  E-value=0.029  Score=53.81  Aligned_cols=41  Identities=20%  Similarity=0.602  Sum_probs=33.9

Q ss_pred             CceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchh
Q 008103           44 RKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQS   95 (577)
Q Consensus        44 ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks   95 (577)
                      .-+|.|.   |     ++   ....+.+|.++|+++++|+|..|++.|....
T Consensus       117 ~~~Y~C~---C-----~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        117 TFPYRCK---C-----QE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEEcC---C-----CC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            3579995   7     55   6677899999999999999999999887654

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.25  E-value=0.047  Score=57.54  Aligned_cols=80  Identities=28%  Similarity=0.591  Sum_probs=59.5

Q ss_pred             eeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCC---Ccc------cchhhhhhhccc-cCCcee----ec
Q 008103           46 VYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCS---KRY------AVQSDWKAHSKT-CGTREY----RC  111 (577)
Q Consensus        46 py~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~---K~F------~sks~L~~H~r~-hgeKpy----~C  111 (577)
                      .|.||...|     ..+......|+.|.+..++  .+-|.+|-   |.|      .++..|..|... -.+.-|    .|
T Consensus       151 ~F~CP~skc-----~~~C~~~k~lk~H~K~~H~--~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C  223 (493)
T COG5236         151 SFKCPKSKC-----HRRCGSLKELKKHYKAQHG--FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLC  223 (493)
T ss_pred             HhcCCchhh-----hhhhhhHHHHHHHHHhhcC--cEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchh
Confidence            478998777     7788888999999998665  36777762   334      456677778776 322222    59


Q ss_pred             C-CCCCcCChhHHHHHHHHhcc
Q 008103          112 D-CGTLFSRRDSFITHRAFCDA  132 (577)
Q Consensus       112 ~-Cgk~F~~~s~L~~H~r~h~~  132 (577)
                      . |.+.|..-++|.+|+|..|.
T Consensus       224 ~FC~~~FYdDDEL~~HcR~~HE  245 (493)
T COG5236         224 IFCKIYFYDDDELRRHCRLRHE  245 (493)
T ss_pred             hhccceecChHHHHHHHHhhhh
Confidence            9 99999999999999997644

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=92.20  E-value=0.038  Score=36.97  Aligned_cols=24  Identities=33%  Similarity=0.818  Sum_probs=20.9

Q ss_pred             cccccccccccCChHHHHHHHHhc
Q 008103            5 RFICEVCNKGFQREQNLQLHRRGH   28 (577)
Q Consensus         5 py~C~~CgK~F~~~s~L~~H~r~H   28 (577)
                      .|.|.+|++.|.+...|+.|++..
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk   24 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSK   24 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccC
Confidence            378999999999999999998753

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.10  E-value=0.085  Score=41.03  Aligned_cols=33  Identities=18%  Similarity=0.436  Sum_probs=24.8

Q ss_pred             ccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcc
Q 008103           42 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKK   81 (577)
Q Consensus        42 ~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKp   81 (577)
                      ..+.|..|++  |     +..+....+|++|+.++++.||
T Consensus        20 ~S~~PatCP~--C-----~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPI--C-----GAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TT--T-------EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCc--c-----hhhccchhhHHHHHHHHhcccC
Confidence            5788999999  9     9999999999999999888776

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=91.66  E-value=0.3  Score=51.68  Aligned_cols=66  Identities=11%  Similarity=0.114  Sum_probs=43.9

Q ss_pred             eecC-CCCCcCChhHHHHHHHHhccchhhhccCCCCccc-----------ccCcccccCccccccccccchhhhhhhhh
Q 008103          109 YRCD-CGTLFSRRDSFITHRAFCDALAQESARHQPSLSA-----------IGSHLYASTNNMALGLSQVGPQLSSIKDH  175 (577)
Q Consensus       109 y~C~-Cgk~F~~~s~L~~H~r~h~~~~~~s~~~~~~l~~-----------~~~~~y~c~~~C~~~fs~~ssl~~H~k~h  175 (577)
                      .+|- |...+-+...|..|++..|..--........|.-           ...+..+|-. |...|-....|+.||-.+
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~-cd~~F~~e~~l~~hm~e~  357 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAE-CDLSFWKEPGLLIHMVED  357 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhcccccc-ccccccCcchhhhhcccc
Confidence            4799 9999999999999999765533322222222211           2234456666 888888888888887644

>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]

Probab=91.61  E-value=0.032  Score=58.84  Aligned_cols=49  Identities=31%  Similarity=0.688  Sum_probs=31.6

Q ss_pred             CcccccCc--CCCcccchhhhhhhccc-c-------------------CCceeecC-CCCCcCChhHHHHHH
Q 008103           79 EKKWKCEK--CSKRYAVQSDWKAHSKT-C-------------------GTREYRCD-CGTLFSRRDSFITHR  127 (577)
Q Consensus        79 eKpykC~~--C~K~F~sks~L~~H~r~-h-------------------geKpy~C~-Cgk~F~~~s~L~~H~  127 (577)
                      +|+|+|.+  |+|.++....|+.|... |                   ..|+|+|+ |.|+++....|+-|+
T Consensus       347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~~~s~~~~ph~~~~~~nk~~r~~i~~~~~k~~~~l~~~~  418 (442)
T KOG4124|consen  347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQGFVVENKPYRCEVCSKRYKNLNGLKYHR  418 (442)
T ss_pred             cCCCCCCCCcchhhcccCcceeeccccCcCCCCCCCCCCCCCcceeeeccCcccChhhhhhhccCCCCCcee
Confidence            35677755  77777777777776654 3                   13667777 777776655555443

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=90.78  E-value=0.15  Score=34.05  Aligned_cols=22  Identities=27%  Similarity=0.742  Sum_probs=17.9

Q ss_pred             cccCcCCCcccchhhhhhhccc
Q 008103           82 WKCEKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        82 ykC~~C~K~F~sks~L~~H~r~  103 (577)
                      |.|++|++.|.....|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6788888888888888888775

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=90.07  E-value=0.12  Score=33.48  Aligned_cols=21  Identities=19%  Similarity=0.725  Sum_probs=11.0

Q ss_pred             cccCcCCCcccchhhhhhhcc
Q 008103           82 WKCEKCSKRYAVQSDWKAHSK  102 (577)
Q Consensus        82 ykC~~C~K~F~sks~L~~H~r  102 (577)
                      |.|++|++.|.....|+.|++
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCCcCCHHHHHHHHC
Confidence            345555555555555555544

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=90.02  E-value=0.15  Score=32.92  Aligned_cols=23  Identities=26%  Similarity=0.608  Sum_probs=18.8

Q ss_pred             ccccccccccCChHHHHHHHHhcC
Q 008103            6 FICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         6 y~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      |+|+.|..... +..|.+|++.|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            78999999988 999999999864

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.94  E-value=0.087  Score=52.03  Aligned_cols=82  Identities=21%  Similarity=0.443  Sum_probs=66.5

Q ss_pred             cCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc-c----------CCceeec
Q 008103           43 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-C----------GTREYRC  111 (577)
Q Consensus        43 ~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-h----------geKpy~C  111 (577)
                      ....+.|++-+|     ...|.....+..|..+-++   -.|.+|.+.|.+...|..|+.. |          |.-.|.|
T Consensus        76 ~~~~~~cqvagc-----~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~C  147 (253)
T KOG4173|consen   76 RVPAFACQVAGC-----CQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQC  147 (253)
T ss_pred             ccccccccccch-----HHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHH
Confidence            346688999888     8999988888888866544   3899999999999999999876 5          3345999


Q ss_pred             C---CCCCcCChhHHHHHHHHhcc
Q 008103          112 D---CGTLFSRRDSFITHRAFCDA  132 (577)
Q Consensus       112 ~---Cgk~F~~~s~L~~H~r~h~~  132 (577)
                      -   |+..|.+....++|+-..|+
T Consensus       148 lvEgCt~KFkT~r~RkdH~I~~Hk  171 (253)
T KOG4173|consen  148 LVEGCTEKFKTSRDRKDHMIRMHK  171 (253)
T ss_pred             HHHhhhhhhhhhhhhhhHHHHhcc
Confidence            4   99999999999999864433

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=89.85  E-value=0.27  Score=31.69  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=12.7

Q ss_pred             eecC-CCCCcCChhHHHHHHHHhc
Q 008103          109 YRCD-CGTLFSRRDSFITHRAFCD  131 (577)
Q Consensus       109 y~C~-Cgk~F~~~s~L~~H~r~h~  131 (577)
                      |+|+ |..... +..|.+|++.++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            5666 666665 666677766654

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=89.50  E-value=0.18  Score=61.17  Aligned_cols=90  Identities=9%  Similarity=0.102  Sum_probs=64.3

Q ss_pred             cCcCCCcccchhhhhhhccc--cCCceeecC-CCCCcCChhHHHHHHHHhccchhh--------hccCCC-CcccccCcc
Q 008103           84 CEKCSKRYAVQSDWKAHSKT--CGTREYRCD-CGTLFSRRDSFITHRAFCDALAQE--------SARHQP-SLSAIGSHL  151 (577)
Q Consensus        84 C~~C~K~F~sks~L~~H~r~--hgeKpy~C~-Cgk~F~~~s~L~~H~r~h~~~~~~--------s~~~~~-~l~~~~~~~  151 (577)
                      |..|+..+.++..+..|++.  ...|.|+|+ |...|+....|..|+|..|..-..        .++... ....-..++
T Consensus       439 ~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p  518 (1406)
T KOG1146|consen  439 LTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKP  518 (1406)
T ss_pred             ccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCc
Confidence            45566777777777777776  455899999 999999999999999974332211        111111 111145678


Q ss_pred             cccCccccccccccchhhhhhhh
Q 008103          152 YASTNNMALGLSQVGPQLSSIKD  174 (577)
Q Consensus       152 y~c~~~C~~~fs~~ssl~~H~k~  174 (577)
                      |.|.. |...++..+.|..|++.
T Consensus       519 ~~C~~-C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  519 YPCRA-CNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             cccee-eeeeeecchHHHHHHHH
Confidence            99988 99999999999999874

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=88.36  E-value=0.5  Score=50.75  Aligned_cols=163  Identities=14%  Similarity=0.222  Sum_probs=97.1

Q ss_pred             cccccccccccCChHHHHHHHHhcCCCcccccc----------------------cc--ccccCceeeCCCCCccCCCCC
Q 008103            5 RFICEVCNKGFQREQNLQLHRRGHNLPWKLKQK----------------------TT--KEVKRKVYLCPEPTCVHHDPS   60 (577)
Q Consensus         5 py~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h----------------------~~--~~~~ekpy~C~~~~C~~~~~~   60 (577)
                      -|+|.-|...|.+...-+.|.++-.-.|.+++.                      ..  ....+.++.|..  |     .
T Consensus         3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~--c-----~   75 (390)
T KOG2785|consen    3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEA--C-----N   75 (390)
T ss_pred             cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHH--h-----h
Confidence            389999999999999999999875422222210                      11  134567899999  9     9


Q ss_pred             CccCChhhHHhHhhhccC-----------------Ccccc-------------cCcCCCcccchhhhhhhccc-------
Q 008103           61 RALGDLTGIKKHYSRKHG-----------------EKKWK-------------CEKCSKRYAVQSDWKAHSKT-------  103 (577)
Q Consensus        61 k~F~~~s~Lk~H~r~Htg-----------------eKpyk-------------C~~C~K~F~sks~L~~H~r~-------  103 (577)
                      |.|........|+.....                 ++.+.             |..|-..+........+...       
T Consensus        76 k~~~s~~a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~~~~p~~l~~~~e~e~~~~E~~~~~d~~~e~~~dd~~Edi~  155 (390)
T KOG2785|consen   76 KSFASPKAHENHLKSKKHVENLSNHQRSEEGDSAKISQLPSRRPSNLQNKGESELKWYEVDSDEDSSEEEEEDDEEEDIE  155 (390)
T ss_pred             ccccChhhHHHHHHHhhcchhhhhhhccccccchhhhhccccCccccccCCCcccchhhcccccccchhhccCcchhhhh
Confidence            999998888888753211                 11222             33333333332222222221       


Q ss_pred             ------cCCceeecC-CCCCcCChhHHHHHHHHhccchhhhc---cCCCC-cccccCc--c-cccCcccc---ccccccc
Q 008103          104 ------CGTREYRCD-CGTLFSRRDSFITHRAFCDALAQESA---RHQPS-LSAIGSH--L-YASTNNMA---LGLSQVG  166 (577)
Q Consensus       104 ------hgeKpy~C~-Cgk~F~~~s~L~~H~r~h~~~~~~s~---~~~~~-l~~~~~~--~-y~c~~~C~---~~fs~~s  166 (577)
                            -..-|-.|- |.+.|..-..-.+||..+|.....-.   ..... +..++.+  . +.|-. |.   ..|....
T Consensus       156 ~d~~~e~e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~-CN~~~~~f~sle  234 (390)
T KOG2785|consen  156 EDGDDEDELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLF-CNELGRPFSSLE  234 (390)
T ss_pred             hccchhcccCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEE-eccccCcccccH
Confidence                  112456788 99999999999999998877322111   11111 2223332  2 33333 66   6777777


Q ss_pred             hhhhhhhhh
Q 008103          167 PQLSSIKDH  175 (577)
Q Consensus       167 sl~~H~k~h  175 (577)
                      +-..||...
T Consensus       235 avr~HM~~K  243 (390)
T KOG2785|consen  235 AVRAHMRDK  243 (390)
T ss_pred             HHHHHHhhc
Confidence            777888643

>smart00451 ZnF_U1 U1-like zinc finger

Probab=88.30  E-value=0.31  Score=34.07  Aligned_cols=25  Identities=32%  Similarity=0.773  Sum_probs=22.1

Q ss_pred             CcccccccccccCChHHHHHHHHhc
Q 008103            4 NRFICEVCNKGFQREQNLQLHRRGH   28 (577)
Q Consensus         4 kpy~C~~CgK~F~~~s~L~~H~r~H   28 (577)
                      .+|.|++|++.|.+...+..|++..
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~gk   26 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLKGK   26 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHChH
Confidence            3689999999999999999998764

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]

Probab=87.07  E-value=0.18  Score=53.45  Aligned_cols=55  Identities=36%  Similarity=0.721  Sum_probs=44.5

Q ss_pred             CceeeCCCCCccCCCCCCccCChhhHHhHhhh---------------cc----CCcccccCcCCCcccchhhhhhhccc
Q 008103           44 RKVYLCPEPTCVHHDPSRALGDLTGIKKHYSR---------------KH----GEKKWKCEKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        44 ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~---------------Ht----geKpykC~~C~K~F~sks~L~~H~r~  103 (577)
                      .++|+|++|.|     .+.++....|+.|...               |+    ..|+|+|++|.|+++....|+.|...
T Consensus       347 ~~~~~~~vp~~-----~~~~~n~ng~~~~~~~~h~s~i~~~s~~~~ph~~~~~~nk~~r~~i~~~~~k~~~~l~~~~~~  420 (442)
T KOG4124|consen  347 DKPYKCPVPNC-----DKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQGFVVENKPYRCEVCSKRYKNLNGLKYHRTH  420 (442)
T ss_pred             cCCCCCCCCcc-----hhhcccCcceeeccccCcCCCCCCCCCCCCCcceeeeccCcccChhhhhhhccCCCCCceeeh
Confidence            58999999999     8999988888888643               22    25899999999999888878776654

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=85.11  E-value=0.75  Score=48.77  Aligned_cols=25  Identities=32%  Similarity=0.610  Sum_probs=22.5

Q ss_pred             CcccccccccccCChHHHHHHHHhc
Q 008103            4 NRFICEVCNKGFQREQNLQLHRRGH   28 (577)
Q Consensus         4 kpy~C~~CgK~F~~~s~L~~H~r~H   28 (577)
                      .+++|-.|.|.|+++.-|+.||+..
T Consensus       194 ~r~~CLyCekifrdkntLkeHMrkK  218 (423)
T KOG2482|consen  194 ERLRCLYCEKIFRDKNTLKEHMRKK  218 (423)
T ss_pred             hhheeeeeccccCCcHHHHHHHHhc
Confidence            3688999999999999999999874

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=83.46  E-value=0.88  Score=30.15  Aligned_cols=20  Identities=35%  Similarity=0.908  Sum_probs=12.9

Q ss_pred             ecC-CCCCcCChhHHHHHHHHh
Q 008103          110 RCD-CGTLFSRRDSFITHRAFC  130 (577)
Q Consensus       110 ~C~-Cgk~F~~~s~L~~H~r~h  130 (577)
                      .|+ |++.| ..+.|.+|++++
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~~C   24 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEKIC   24 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHHhc
Confidence            466 77777 556677776654

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=83.22  E-value=0.97  Score=29.94  Aligned_cols=21  Identities=24%  Similarity=0.656  Sum_probs=18.2

Q ss_pred             ccccccccccCChHHHHHHHHh
Q 008103            6 FICEVCNKGFQREQNLQLHRRG   27 (577)
Q Consensus         6 y~C~~CgK~F~~~s~L~~H~r~   27 (577)
                      .+|+.|++.| ....|.+|+++
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            5799999999 67889999875

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=80.99  E-value=1.6  Score=47.09  Aligned_cols=53  Identities=19%  Similarity=0.213  Sum_probs=42.6

Q ss_pred             cccccCcCCCcccchhhhhhhccc-cCC-----------------------ceeecC-CC---CCcCChhHHHHHHHH--
Q 008103           80 KKWKCEKCSKRYAVQSDWKAHSKT-CGT-----------------------REYRCD-CG---TLFSRRDSFITHRAF--  129 (577)
Q Consensus        80 KpykC~~C~K~F~sks~L~~H~r~-hge-----------------------Kpy~C~-Cg---k~F~~~s~L~~H~r~--  129 (577)
                      -|-.|-.|++.+.....-..||.. |+-                       +-|.|- |.   +.|......+.||.-  
T Consensus       165 ~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~K~  244 (390)
T KOG2785|consen  165 IPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRDKG  244 (390)
T ss_pred             CCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhhcc
Confidence            356799999999999998999988 641                       237788 88   999999999999974  


Q ss_pred             hcc
Q 008103          130 CDA  132 (577)
Q Consensus       130 h~~  132 (577)
                      ||+
T Consensus       245 HCk  247 (390)
T KOG2785|consen  245 HCK  247 (390)
T ss_pred             Ccc
Confidence            544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	577
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		5e-08
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		7e-05

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 22/124 (17%)
Query: 6   FICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGD 65
           + C  C K F +  NL+ H+R H                K Y CPE  C      ++   
Sbjct: 78  YKCPECGKSFSQRANLRAHQRTH-------------TGEKPYACPE--C-----GKSFSQ 117
Query: 66  LTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC-DCGTLFSRRDSF 123
           L  ++ H     GEK +KC +C K ++ + +   H +T  G + Y+C +CG  FSRRD+ 
Sbjct: 118 LAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDAL 177
Query: 124 ITHR 127
             H+
Sbjct: 178 NVHQ 181

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 45  KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT- 103
           K Y CPE  C      ++    + ++KH     GEK +KC +C K ++  SD + H +T 
Sbjct: 3   KPYKCPE--C-----GKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH 55
Query: 104 CGTREYRC-DCGTLFSRRDSFITHR 127
            G + Y+C +CG  FSR D    H+
Sbjct: 56  TGEKPYKCPECGKSFSRSDHLSRHQ 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	577
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-09
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-05
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-08
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-06
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	1e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	3e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	5e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	1e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	5e-06
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	8e-06
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-05
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-04
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-05
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	4e-04
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-05
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-04
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	4e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	4e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	9e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-04
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	2e-04
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-04
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	6e-04
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	9e-04
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	7e-04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	9e-04

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 54.4 bits (132), Expect = 2e-09
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 26/128 (20%)

Query: 6   FICE--VCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRAL 63
           F+C    CNK + +  +LQ+H R H          T E   K Y C    C      R  
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKH----------TGE---KPYQCDFKDC-----ERRF 48

Query: 64  GDLTGIKKHYSRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC---DCGTLFS 118
                +K+H  R+H G K ++C+ C ++++     K H++T  G + + C    C   F+
Sbjct: 49  SRSDQLKRH-QRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107

Query: 119 RRDSFITH 126
           R D  + H
Sbjct: 108 RSDELVRH 115

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 11/88 (12%)

Query: 45  KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKH-GEKKWKCEK--CSKRYAVQSDWKAHS 101
           + ++C  P C     ++    L+ ++ H SRKH GEK ++C+   C +R++     K H 
Sbjct: 5   RPFMCAYPGC-----NKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ 58

Query: 102 KT-CGTREYRCD-CGTLFSRRDSFITHR 127
           +   G + ++C  C   FSR D   TH 
Sbjct: 59  RRHTGVKPFQCKTCQRKFSRSDHLKTHT 86

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 21/96 (21%)

Query: 11  CNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIK 70
           C K + R +NL+ H R H          T E   K Y+C    C     S+A  + +   
Sbjct: 75  CRKSYSRLENLKTHLRSH----------TGE---KPYMCEHEGC-----SKAFSNASDRA 116

Query: 71  KHYSRKH-GEKKWKCEK--CSKRYAVQSDWKAHSKT 103
           KH +R H  EK + C+   C+KRY   S  + H KT
Sbjct: 117 KHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 20/126 (15%)

Query: 8   CEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLT 67
            + C++ F  ++ L  H    ++         +    K ++C           R      
Sbjct: 6   WDGCSQEFDSQEQLVHHINSEHI-------HGER---KEFVCHW--GGCSRELRPFKAQY 53

Query: 68  GIKKHYSRKH-GEKKWKC--EKCSKRYAVQSDWKAHSKT-CGTREYRC---DCGTLFSRR 120
            +  H  R+H GEK  KC  E C K Y+   + K H ++  G + Y C    C   FS  
Sbjct: 54  MLVVHM-RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNA 112

Query: 121 DSFITH 126
                H
Sbjct: 113 SDRAKH 118

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 21/95 (22%)

Query: 6   FICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGD 65
           F C +C + F R  +L  H R H          T E   K + C    C      R    
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTH----------TGE---KPFACDI--C-----GRKFAR 43

Query: 66  LTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAH 100
               K+H            +K  +  +     +  
Sbjct: 44  SDERKRH-RDIQHILPILEDKVEELLSKNYHLENE 77

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 20/96 (20%)

Query: 8   CEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLT 67
            E C K F++   L++H+  H          T++     Y CP   C      +     +
Sbjct: 6   FENCGKAFKKHNQLKVHQFSH----------TQQ---LPYECPHEGC-----DKRFSLPS 47

Query: 68  GIKKHYSRKH-GEKKWKCEKCSKRYAVQSDWKAHSK 102
            +K+H  + H G    K + CS      + +  H  
Sbjct: 48  RLKRHE-KVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 44.5 bits (106), Expect = 5e-06
 Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 22/101 (21%)

Query: 6   FICEV--CNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRAL 63
             C+   C K + +  +L+ H R H          T E   K Y C    C         
Sbjct: 16  HYCDYPGCTKVYTKSSHLKAHLRTH----------TGE---KPYKCTWEGC-----DWRF 57

Query: 64  GDLTGIKKHYSRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT 103
                + +HY RKH G K ++C  C++ ++       H K 
Sbjct: 58  ARSDELTRHY-RKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 11/97 (11%)

Query: 36  QKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKH-GEKKWKC--EKCSKRYA 92
                  KR+++ C  P C     ++     + +K H  R H GEK +KC  E C  R+A
Sbjct: 5   SSGPDLEKRRIHYCDYPGC-----TKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFA 58

Query: 93  VQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHR 127
              +   H +   G + ++C  C   FSR D    H 
Sbjct: 59  RSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 46.4 bits (111), Expect = 5e-06
 Identities = 31/126 (24%), Positives = 39/126 (30%), Gaps = 26/126 (20%)

Query: 9   EVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTG 68
           E C KGF    +L  H   H          T E   K + C    C              
Sbjct: 48  EGCEKGFTSLHHLTRHSLTH----------TGE---KNFTCDSDGC-----DLRFTTKAN 89

Query: 69  IKKHYSRKHGEKKW--KC--EKCSKRYAVQSDWKAHSKT-CGTREYRC---DCGTLFSRR 120
           +KKH++R H  K     C  E C K +   +  K H  +      Y C    C   FS  
Sbjct: 90  MKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLP 149

Query: 121 DSFITH 126
                H
Sbjct: 150 SRLKRH 155

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 32/134 (23%), Positives = 48/134 (35%), Gaps = 32/134 (23%)

Query: 5   RFICEV--CNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRA 62
           R+IC    C   + +   LQ H   H          T E   K + C E  C      + 
Sbjct: 12  RYICSFADCGAAYNKNWKLQAHLCKH----------TGE---KPFPCKEEGC-----EKG 53

Query: 63  LGDLTGIKKHYSRKH-GEKKWKCE--KCSKRYAVQSDWKAHSKTCGTRE----YRC---D 112
              L  + +H S  H GEK + C+   C  R+  +++ K H            Y C   +
Sbjct: 54  FTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR-FHNIKICVYVCHFEN 111

Query: 113 CGTLFSRRDSFITH 126
           CG  F + +    H
Sbjct: 112 CGKAFKKHNQLKVH 125

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 42.9 bits (102), Expect = 8e-06
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 75  RKH-GEKKWKCEKCSKRYAVQSDWKAHSKTC---GTREYRC-DCGTLFSRRDSFITHR 127
               GE  ++C+ CS+ Y   S++  H  T      + Y C  C   F+R+D+   H 
Sbjct: 3   FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 42.8 bits (102), Expect = 1e-05
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 45  KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT 103
           + Y CP  +C      R       + +H  R H G+K ++C  C + ++       H +T
Sbjct: 3   RPYACPVESC-----DRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56

Query: 104 -CGTREYRCD-CGTLFSRRDSFITHR 127
             G + + CD CG  F+R D    H 
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHT 82

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 24/101 (23%)

Query: 6   FICEV--CNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRAL 63
           + C V  C++ F +  +L  H R H          T +   K + C    C      R  
Sbjct: 5   YACPVESCDRRFSQSGSLTRHIRIH----------TGQ---KPFQCRI--C-----MRNF 44

Query: 64  GDLTGIKKHYSRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT 103
                +  H  R H GEK + C+ C +++A   + K H+K 
Sbjct: 45  SRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRHTKI 84

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 31/109 (28%), Positives = 40/109 (36%), Gaps = 23/109 (21%)

Query: 8   CEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLT 67
           C    K F+ +  L  H R H          T E   K + CP P C      +      
Sbjct: 65  CPREGKSFKAKYKLVNHIRVH----------TGE---KPFPCPFPGC-----GKIFARSE 106

Query: 68  GIKKHYSRKH-GEKKWKC--EKCSKRYAVQSDWKAHSKT-CGTREYRCD 112
            +K H  R H GEK +KC  E C +R+A  SD K H       +     
Sbjct: 107 NLKIHK-RTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 21/129 (16%)

Query: 6   FICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS-RALG 64
              + C++ F     L  H                  ++  ++C    C     S +A  
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTME---------HVGGPEQNNHVCYWEECPREGKSFKAKY 76

Query: 65  DLTGIKKHYSRKH-GEKKWKC--EKCSKRYAVQSDWKAHSKT-CGTREYRC---DCGTLF 117
            L     H  R H GEK + C    C K +A   + K H +T  G + ++C    C   F
Sbjct: 77  KL---VNH-IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRF 132

Query: 118 SRRDSFITH 126
           +       H
Sbjct: 133 ANSSDRKKH 141

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 45  KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT- 103
           +   CP   C     ++   D + ++KH    HG +   C +C K +   S  K H    
Sbjct: 4   RTIACPHKGC-----TKMFRDNSAMRKHL-HTHGPRVHVCAECGKAFVESSKLKRHQLVH 57

Query: 104 CGTREYRC---DCGTLFSRRDSFITH 126
            G + ++C    CG  FS   +  TH
Sbjct: 58  TGEKPFQCTFEGCGKRFSLDFNLRTH 83

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 29/126 (23%)

Query: 8   CEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLT 67
            + C K F+    ++ H   H                +V++C E  C      +A  + +
Sbjct: 10  HKGCTKMFRDNSAMRKHLHTHG--------------PRVHVCAE--C-----GKAFVESS 48

Query: 68  GIKKHYSRKH-GEKKWKC--EKCSKRYAVQSDWKAHSKT-CGTREYRC---DCGTLFSRR 120
            +K+H    H GEK ++C  E C KR+++  + + H +   G R Y C    C   F++ 
Sbjct: 49  KLKRH-QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQS 107

Query: 121 DSFITH 126
            +  +H
Sbjct: 108 TNLKSH 113

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 41.7 bits (99), Expect = 4e-05
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 20/97 (20%)

Query: 8   CEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLT 67
              C K + +  +L+ H R H          T E   K Y C    C             
Sbjct: 10  YAGCGKTYTKSSHLKAHLRTH----------TGE---KPYHCDWDGC-----GWKFARSD 51

Query: 68  GIKKHYSRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT 103
            + +HY RKH G + ++C+KC + ++       H K 
Sbjct: 52  ELTRHY-RKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 6/62 (9%)

Query: 70  KKHYSRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT---CGTREYRCD-CGTLFSRRDSFI 124
                R H GEK ++C  C  R+      K H          ++ C  C T+ +R+    
Sbjct: 4   GSSG-RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62

Query: 125 TH 126
            H
Sbjct: 63  VH 64

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 40.9 bits (97), Expect = 4e-05
 Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 75  RKH-GEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRA 128
                    KC +CS   + ++  + H +  C  R ++C+ C     +  +   H  
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 40.1 bits (94), Expect = 9e-05
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 5/55 (9%)

Query: 78  GEKKWKCEKCSKRYAVQSDWKAHSKT----CGTREYRCD-CGTLFSRRDSFITHR 127
           G    +CE C      ++    H +          + C+ CG  F + DS   HR
Sbjct: 4   GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 14/98 (14%), Positives = 24/98 (24%), Gaps = 45/98 (45%)

Query: 6   FICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGD 65
             CE+C    +++ +L  H+R H                                     
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKH------------------------------------- 30

Query: 66  LTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT 103
                   +      ++ CE C KR+       AH   
Sbjct: 31  --------AETVAALRFPCEFCGKRFEKPDSVAAHRSK 60

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 3/67 (4%)

Query: 66  LTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFI 124
            +G   H   +   +   C+ C          K H   CG R   C  CG     +D   
Sbjct: 2   SSGSSGHEETECPLRLAVCQHCDLEL-SILKLKEHEDYCGARTELCGNCGRNVLVKD-LK 59

Query: 125 THRAFCD 131
           TH   C 
Sbjct: 60  THPEVCG 66

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 40.9 bits (97), Expect = 3e-04
 Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 26/124 (20%)

Query: 8   CEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLT 67
           C  C K F  +++L  H+R H          T E   K Y CPE  C      ++     
Sbjct: 52  CPECGKSFSDKKDLTRHQRTH----------TGE---KPYKCPE--C-----GKSFSQRA 91

Query: 68  GIKKHYSRKH-GEKKWKCEKCSKRYAVQSDWKAHSKTCGTRE--YRC-DCGTLFSRRDSF 123
            ++ H  R H GEK + C +C K ++  +  +AH +T  T E  Y+C +CG  FSR D+ 
Sbjct: 92  NLRAHQ-RTHTGEKPYACPECGKSFSQLAHLRAHQRT-HTGEKPYKCPECGKSFSREDNL 149

Query: 124 ITHR 127
            TH+
Sbjct: 150 HTHQ 153

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 40.1 bits (95), Expect = 6e-04
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 24/122 (19%)

Query: 8   CEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLT 67
           C  C K F R  +L  H+R H          T E   K Y CPE  C      ++  D  
Sbjct: 24  CPECGKSFSRSDHLAEHQRTH----------TGE---KPYKCPE--C-----GKSFSDKK 63

Query: 68  GIKKHYSRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC-DCGTLFSRRDSFI 124
            + +H  R H GEK +KC +C K ++ +++ +AH +T  G + Y C +CG  FS+     
Sbjct: 64  DLTRHQ-RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLR 122

Query: 125 TH 126
            H
Sbjct: 123 AH 124

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 39.7 bits (94), Expect = 9e-04
 Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 24/122 (19%)

Query: 8   CEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLT 67
           C  C K F +  NL+ H+R H          T E   K Y CPE  C      ++   L 
Sbjct: 80  CPECGKSFSQRANLRAHQRTH----------TGE---KPYACPE--C-----GKSFSQLA 119

Query: 68  GIKKHYSRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC-DCGTLFSRRDSFI 124
            ++ H  R H GEK +KC +C K ++ + +   H +T  G + Y+C +CG  FSRRD+  
Sbjct: 120 HLRAHQ-RTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALN 178

Query: 125 TH 126
            H
Sbjct: 179 VH 180

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 37.5 bits (88), Expect = 7e-04
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 23/90 (25%)

Query: 6  FICEV--CNKGFQREQNLQLHRR-GHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRA 62
            C+   C + F   Q L  H++  H            +   K + CPEP C      ++
Sbjct: 8  MPCDFPGCGRIFSNRQYLNHHKKYQH----------IHQ---KSFSCPEPAC-----GKS 49

Query: 63 LGDLTGIKKHYSRKH-GEKKWKCEKCSKRY 91
                +K+H  + H   + + CE      
Sbjct: 50 FNFKKHLKEH-MKLHSDTRDYICEFSGPSS 78

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 36.6 bits (84), Expect = 9e-04
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 81  KWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRA 128
           K+ CE+C  R    S  K H +T    R Y C  C   F  + +   H  
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	577
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.93
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.91
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.89
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.88
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.86
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.86
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.84
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.82
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.82
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.81
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.78
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.78
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.77
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.76
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.72
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.71
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.69
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.69
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.67
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.65
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.65
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.64
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.64
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.63
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.63
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.62
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.62
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.62
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.61
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.61
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.59
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.58
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.58
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.58
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.57
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.54
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.53
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.5
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.5
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.49
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.49
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.43
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.43
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.43
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.42
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.39
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.38
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.37
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.37
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.35
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.35
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.35
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.33
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.31
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.31
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.3
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.27
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.27
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.26
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.23
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.23
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.21
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.21
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.21
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.2
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.17
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.17
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.15
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.13
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.13
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.12
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.11
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.09
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.08
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.07
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.06
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.03
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.03
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.0
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.98
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.94
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.93
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.92
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.9
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.9
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.9
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.89
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.88
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.88
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.88
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.88
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.88
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.88
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.88
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.87
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.87
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.87
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.87
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.87
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.86
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.86
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.86
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.86
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.86
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.86
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.86
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.86
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.86
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.86
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.86
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.86
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.85
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.85
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.85
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.85
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.85
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.85
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.85
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.85
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.84
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.84
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.84
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.84
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.83
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.82
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.82
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.82
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.81
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.81
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.81
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.78
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.78
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.77
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.77
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.77
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.77
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.77
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.77
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.76
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.76
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.76
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.76
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.76
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.76
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.76
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.76
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.76
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.76
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.76
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.75
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.75
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.75
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.75
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.75
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.75
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.75
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.75
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.75
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.75
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.75
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.75
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.75
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.75
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.75
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.74
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.74
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.74
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.74
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.74
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.74
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.74
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.74
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.74
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.74
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.74
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.74
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.74
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.73
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.73
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.73
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.73
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.73
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.73
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.73
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.73
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.73
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.73
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.72
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.72
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.72
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.72
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.72
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.72
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.72
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.72
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.72
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.72
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.72
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.71
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.71
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.71
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.71
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.71
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.71
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.71
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.7
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.7
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.7
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.7
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.7
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.7
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.7
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.69
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.69
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.69
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.69
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.69
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.69
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.68
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.68
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.67
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.66
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.66
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.66
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.65
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.65
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.65
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.64
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.64
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.63
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.63
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.61
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.6
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.58
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.58
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.57
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.57
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.57
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.57
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.57
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.56
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.56
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.56
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.56
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.56
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.56
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.55
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.55
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.55
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.55
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.55
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.55
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.54
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.54
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.54
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.54
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.54
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.54
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.53
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.53
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.53
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.52
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.52
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.51
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.51
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.51
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.5
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.5
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.49
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.49
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.48
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.48
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.47
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.47
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.47
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.46
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.45
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.45
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.45
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.45
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.45
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.43
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.43
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.41
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.41
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.39
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.36
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.36
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.36
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.28
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.27
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.23
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.21
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.21
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.16
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.15
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.09
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.05
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.04
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.04
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.95
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.92
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.9
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.89
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.88
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.85
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.85
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	97.84
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.83
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.83
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.81
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.81
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.78
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.78
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.78
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.77
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	97.77
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.77
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.73
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	97.73
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.73
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.7
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.86
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.68
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.65
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.65
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.64
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.64
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.61
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.6
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.6
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.59
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.56
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.53
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.53
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.53
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.52
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.51
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.5
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.5
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.49
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.62
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.61
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.48
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.47
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.46
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.46
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.43
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.39
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.35
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.32
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.32
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.28
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.25
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.25
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.25
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.2
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.18
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.24
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.12
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.09
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.07
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.05
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.95
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.92
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	95.94
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	95.93
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	96.86
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	96.77
1paa_A	30	Yeast transcription factor ADR1; transcription reg	96.76
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	96.24
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.16
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.62
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.16
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	94.5
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	94.28
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	92.8
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	91.25
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	88.17
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	82.77

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.93  E-value=2.6e-26  Score=218.17  Aligned_cols=152  Identities=27%  Similarity=0.570  Sum_probs=115.3

Q ss_pred             CCCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcc
Q 008103            2 ATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKK   81 (577)
Q Consensus         2 ~~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKp   81 (577)
                      +++||+|++|++.|.+...|..|++.|.             ++++|.|+.  |     ++.|.....|.+|+++|+++++
T Consensus        18 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~--C-----~~~f~~~~~l~~H~~~h~~~~~   77 (190)
T 2i13_A           18 GEKPYACPECGKSFSRSDHLAEHQRTHT-------------GEKPYKCPE--C-----GKSFSDKKDLTRHQRTHTGEKP   77 (190)
T ss_dssp             -------------CCSSHHHHHGGGCC----------------CCEECTT--T-----CCEESSHHHHHHHHHHHHCCCC
T ss_pred             CCCCCcCCCCccccCCHHHHHHHHHHcC-------------CCCCccCCC--c-----CchhCCHHHHHHHHHhcCCCCC
Confidence            5789999999999999999999999986             677888888  8     8888888888888888888888


Q ss_pred             cccCcCCCcccchhhhhhhccc-cCCceeecC-CCCCcCChhHHHHHHHHhccchhhhccCCCCcccccCcccccCcccc
Q 008103           82 WKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMA  159 (577)
Q Consensus        82 ykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~~~s~L~~H~r~h~~~~~~s~~~~~~l~~~~~~~y~c~~~C~  159 (577)
                      |+|++|++.|.....|..|+++ +++++|.|+ |++.|.....|.+|+++|                .++++|.|.. |+
T Consensus        78 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h----------------~~~~~~~C~~-C~  140 (190)
T 2i13_A           78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH----------------TGEKPYKCPE-CG  140 (190)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHH----------------HCCCCEECTT-TC
T ss_pred             ccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHh----------------CCCCCeECCC-CC
Confidence            8888888888888888888888 788888888 888888888888888887                4566788887 88


Q ss_pred             ccccccchhhhhhhhhcCCCCCccccccCCCC
Q 008103          160 LGLSQVGPQLSSIKDHHQTNQSGDILCLGGSG  191 (577)
Q Consensus       160 ~~fs~~ssl~~H~k~hh~~~kp~~c~~cG~s~  191 (577)
                      +.|.....|..|+++| .+++||.|..|++..
T Consensus       141 ~~f~~~~~L~~H~~~H-~~~~~~~C~~C~~~f  171 (190)
T 2i13_A          141 KSFSREDNLHTHQRTH-TGEKPYKCPECGKSF  171 (190)
T ss_dssp             CEESCHHHHHHHHHHH-HCCCCEECTTTCCEE
T ss_pred             cccCCHHHHHHHHHhc-CCCCCeECCCCCCcc
Confidence            8888888888888876 456788888888753

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.91  E-value=2.7e-25  Score=211.12  Aligned_cols=142  Identities=27%  Similarity=0.632  Sum_probs=130.1

Q ss_pred             CCCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcc
Q 008103            2 ATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKK   81 (577)
Q Consensus         2 ~~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKp   81 (577)
                      ++++|+|++|++.|.+...|..|+++|.             ++++|.|++  |     ++.|.....|..|+++|+++++
T Consensus        46 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~--C-----~~~f~~~~~l~~H~~~h~~~~~  105 (190)
T 2i13_A           46 GEKPYKCPECGKSFSDKKDLTRHQRTHT-------------GEKPYKCPE--C-----GKSFSQRANLRAHQRTHTGEKP  105 (190)
T ss_dssp             --CCEECTTTCCEESSHHHHHHHHHHHH-------------CCCCEECTT--T-----CCEESCHHHHHHHHHHHHTCCC
T ss_pred             CCCCccCCCcCchhCCHHHHHHHHHhcC-------------CCCCccCcc--c-----CCccCCHHHHHHHHHhcCCCCC
Confidence            5789999999999999999999999986             789999999  9     9999999999999999999999


Q ss_pred             cccCcCCCcccchhhhhhhccc-cCCceeecC-CCCCcCChhHHHHHHHHhccchhhhccCCCCcccccCcccccCcccc
Q 008103           82 WKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMA  159 (577)
Q Consensus        82 ykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~~~s~L~~H~r~h~~~~~~s~~~~~~l~~~~~~~y~c~~~C~  159 (577)
                      |+|++|++.|.....|..|+++ +++++|.|+ |++.|.++..|.+|+++|                .++++|.|.. |+
T Consensus       106 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H----------------~~~~~~~C~~-C~  168 (190)
T 2i13_A          106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH----------------TGEKPYKCPE-CG  168 (190)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHH----------------HCCCCEECTT-TC
T ss_pred             CcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhc----------------CCCCCeECCC-CC
Confidence            9999999999999999999999 899999999 999999999999999999                5677899999 99


Q ss_pred             ccccccchhhhhhhhhcCCCCC
Q 008103          160 LGLSQVGPQLSSIKDHHQTNQS  181 (577)
Q Consensus       160 ~~fs~~ssl~~H~k~hh~~~kp  181 (577)
                      +.|.....|..|+++|+ +++|
T Consensus       169 ~~f~~~~~L~~H~~~H~-~~k~  189 (190)
T 2i13_A          169 KSFSRRDALNVHQRTHT-GKKT  189 (190)
T ss_dssp             CEESSHHHHHHHHTTC------
T ss_pred             CccCCHHHHHHHHHhcC-CCCC
Confidence            99999999999999874 4444

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.89  E-value=4.4e-23  Score=195.85  Aligned_cols=150  Identities=21%  Similarity=0.412  Sum_probs=135.9

Q ss_pred             CCCcccc--cccccccCChHHHHHHHHhcCCCccccccccccccCceeeC--CCCCccCCCCCCccCChhhHHhHhhhcc
Q 008103            2 ATNRFIC--EVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLC--PEPTCVHHDPSRALGDLTGIKKHYSRKH   77 (577)
Q Consensus         2 ~~kpy~C--~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C--~~~~C~~~~~~k~F~~~s~Lk~H~r~Ht   77 (577)
                      .+++|+|  ++|++.|.+...|..|+++|.             ++++|.|  +.  |     ++.|.....|.+|+++|+
T Consensus         9 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~-------------~~~~~~C~~~~--C-----~~~f~~~~~l~~H~~~h~   68 (190)
T 1tf6_A            9 VYKRYICSFADCGAAYNKNWKLQAHLCKHT-------------GEKPFPCKEEG--C-----EKGFTSLHHLTRHSLTHT   68 (190)
T ss_dssp             -CCCCBCSSTTTCCBCSSHHHHHHHHHHHH-------------CCCSSCCSSTT--C-----CCCCSSHHHHHHHHTTTT
T ss_pred             CCcceeCCCCCCcchhCCHHHHHHHHHhcC-------------CCCCccCCCCC--C-----ChhhCCHHHHHHHHHHcc
Confidence            4689999  689999999999999999996             7899999  66  8     999999999999999999


Q ss_pred             CCcccccC--cCCCcccchhhhhhhccc-c--CCceeec--C-CCCCcCChhHHHHHHHHhccchhhhccCCCCcccccC
Q 008103           78 GEKKWKCE--KCSKRYAVQSDWKAHSKT-C--GTREYRC--D-CGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGS  149 (577)
Q Consensus        78 geKpykC~--~C~K~F~sks~L~~H~r~-h--geKpy~C--~-Cgk~F~~~s~L~~H~r~h~~~~~~s~~~~~~l~~~~~  149 (577)
                      ++++|+|+  +|++.|..+..|..|++. |  ++++|.|  + |++.|.+...|.+|+++|                .++
T Consensus        69 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H----------------~~~  132 (190)
T 1tf6_A           69 GEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH----------------TQQ  132 (190)
T ss_dssp             TCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGG----------------SSS
T ss_pred             CCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHh----------------CCC
Confidence            99999999  899999999999999954 6  5789999  8 999999999999999998                567


Q ss_pred             cccccC-ccccccccccchhhhhhhhhcCCCCCccccc---cCCCC
Q 008103          150 HLYAST-NNMALGLSQVGPQLSSIKDHHQTNQSGDILC---LGGSG  191 (577)
Q Consensus       150 ~~y~c~-~~C~~~fs~~ssl~~H~k~hh~~~kp~~c~~---cG~s~  191 (577)
                      ++|.|. ..|++.|.....|..|+++|..    +.|..   |++..
T Consensus       133 ~~~~C~~~~C~k~F~~~~~L~~H~~~H~~----~~C~~~~~C~~~f  174 (190)
T 1tf6_A          133 LPYECPHEGCDKRFSLPSRLKRHEKVHAG----YPCKKDDSCSFVG  174 (190)
T ss_dssp             CSSBCCSSSCCCBCSSHHHHHHHHTSSCS----CCCCSTTTCCCCC
T ss_pred             CCccCCCCCCCchhcCHHHHHHHHHHhCC----CcCCCCCcCCCcc
Confidence            889996 3599999999999999998854    88888   88764

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=5.5e-23  Score=188.11  Aligned_cols=146  Identities=21%  Similarity=0.351  Sum_probs=130.3

Q ss_pred             CCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCccc
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKW   82 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpy   82 (577)
                      |.+|+|++|++.|.++..|..|++.++          .+.++++|.|++  |.|..|++.|.....|++|+++|++++||
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h----------~h~~~~~~~C~~--c~C~~c~~~f~~~~~l~~H~~~h~~~~~~   68 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEH----------IHGERKEFVCHW--GGCSRELRPFKAQYMLVVHMRRHTGEKPH   68 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHT----------SSSCSSCCCCCB--TTCTTTTCCCSSHHHHHHHTHHHHCCCCC
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhc----------cCCCCcceeCCC--CCccchhhhhhhHHHHHHHHHhcCCCCCc
Confidence            578999999999999999999998421          224789999998  54455679999999999999999999999


Q ss_pred             ccCc--CCCcccchhhhhhhccc-cCCceeecC---CCCCcCChhHHHHHH-HHhccchhhhccCCCCcccccCcccccC
Q 008103           83 KCEK--CSKRYAVQSDWKAHSKT-CGTREYRCD---CGTLFSRRDSFITHR-AFCDALAQESARHQPSLSAIGSHLYAST  155 (577)
Q Consensus        83 kC~~--C~K~F~sks~L~~H~r~-hgeKpy~C~---Cgk~F~~~s~L~~H~-r~h~~~~~~s~~~~~~l~~~~~~~y~c~  155 (577)
                      +|++  |++.|.....|..|+++ +++++|.|+   |++.|.++..|.+|+ ++|                .++++|.|.
T Consensus        69 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H----------------~~~~~~~C~  132 (155)
T 2gli_A           69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH----------------SNEKPYVCK  132 (155)
T ss_dssp             CCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTT----------------CSCCCEECC
T ss_pred             cCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhc----------------CCCCCeeCC
Confidence            9985  99999999999999999 789999997   999999999999999 677                566789997


Q ss_pred             c-cccccccccchhhhhhhhhc
Q 008103          156 N-NMALGLSQVGPQLSSIKDHH  176 (577)
Q Consensus       156 ~-~C~~~fs~~ssl~~H~k~hh  176 (577)
                      . .|++.|.....|..|++.||
T Consensus       133 ~~~C~~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A          133 LPGCTKRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             STTTCCEESSHHHHHHHHHHSC
T ss_pred             CCCCccccCCHHHHHHHHHhhc
Confidence            4 59999999999999999885

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.86  E-value=4e-22  Score=174.17  Aligned_cols=112  Identities=29%  Similarity=0.700  Sum_probs=105.5

Q ss_pred             CCCCcccccc--cccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccC
Q 008103            1 MATNRFICEV--CNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG   78 (577)
Q Consensus         1 t~~kpy~C~~--CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htg   78 (577)
                      ++++||+|++  |++.|.+...|..|+++|.             ++++|.|+++.|     ++.|.....|.+|+++|++
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-----~~~f~~~~~l~~H~~~h~~   63 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHT-------------GEKPYQCDFKDC-----ERRFSRSDQLKRHQRRHTG   63 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHH-------------TTCCEECCSTTC-----CCEESSHHHHHHHHHHHHC
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhC-------------CCCCccCCCCCC-----cCccCCHHHHHHHHHHcCC
Confidence            4789999997  9999999999999999986             788999994338     9999999999999999999


Q ss_pred             CcccccCcCCCcccchhhhhhhccc-cCCceeec--C-CCCCcCChhHHHHHHHHh
Q 008103           79 EKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC--D-CGTLFSRRDSFITHRAFC  130 (577)
Q Consensus        79 eKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C--~-Cgk~F~~~s~L~~H~r~h  130 (577)
                      +++|+|++|++.|.....|..|+++ +++++|.|  + |++.|.++..|.+|+++|
T Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           64 VKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             CCCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            9999999999999999999999999 89999999  7 999999999999999876

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=9.6e-22  Score=172.69  Aligned_cols=112  Identities=21%  Similarity=0.549  Sum_probs=105.0

Q ss_pred             CCCCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhh---cc
Q 008103            1 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSR---KH   77 (577)
Q Consensus         1 t~~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~---Ht   77 (577)
                      +++++|+|++|++.|.+...|..|+++|.             ++++|.|++  |     ++.|..+..|.+|++.   |.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~--C-----~~~f~~~~~l~~H~~~~~~~~   62 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHT-------------GEKPFECPK--C-----GKCYFRKENLLEHEARNCMNR   62 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHS-------------SCCSCBCTT--T-----CCBCSSHHHHHHHHHHCCCCS
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCC-------------CCCCeECCC--C-----CchhcCHHHHHHHHhhhhcCC
Confidence            47899999999999999999999999996             789999999  9     9999999999999995   57


Q ss_pred             CCcccccCcCCCcccchhhhhhhccc-cCCceeecC-CCCCcCChhHHHHHHHHhcc
Q 008103           78 GEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDA  132 (577)
Q Consensus        78 geKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~~~s~L~~H~r~h~~  132 (577)
                      ++++|+|++|++.|.....|..|+++ ++++||.|+ |++.|.++..|.+|++.+|.
T Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  119 (124)
T 2dlq_A           63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS  119 (124)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSS
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCC
Confidence            89999999999999999999999999 899999999 99999999999999986543

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.84  E-value=3.1e-21  Score=183.11  Aligned_cols=139  Identities=23%  Similarity=0.440  Sum_probs=124.1

Q ss_pred             CCCcccc--cccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHh-hhc-c
Q 008103            2 ATNRFIC--EVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHY-SRK-H   77 (577)
Q Consensus         2 ~~kpy~C--~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~-r~H-t   77 (577)
                      +++||+|  ++|++.|.+...|..|+++|.             ++++|.|+.+.|     ++.|..+..|++|+ +.| .
T Consensus        39 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-----~~~f~~~~~l~~H~~~~h~~  100 (190)
T 1tf6_A           39 GEKPFPCKEEGCEKGFTSLHHLTRHSLTHT-------------GEKNFTCDSDGC-----DLRFTTKANMKKHFNRFHNI  100 (190)
T ss_dssp             CCCSSCCSSTTCCCCCSSHHHHHHHHTTTT-------------TCCCEECCSSSC-----CCEESCHHHHHHHHHTTSST
T ss_pred             CCCCccCCCCCCChhhCCHHHHHHHHHHcc-------------CCCceeCCCCCC-----CCccCCHHHHHHHHHHhcCC
Confidence            5789999  889999999999999999996             789999993238     99999999999999 677 4


Q ss_pred             CCccccc--CcCCCcccchhhhhhhccc-cCCceeec--C-CCCCcCChhHHHHHHHHhccchhhhccCCCCcccccCcc
Q 008103           78 GEKKWKC--EKCSKRYAVQSDWKAHSKT-CGTREYRC--D-CGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHL  151 (577)
Q Consensus        78 geKpykC--~~C~K~F~sks~L~~H~r~-hgeKpy~C--~-Cgk~F~~~s~L~~H~r~h~~~~~~s~~~~~~l~~~~~~~  151 (577)
                      ++++|+|  ++|++.|.....|..|+++ ++++||.|  + |++.|.++..|.+|+++|..                   
T Consensus       101 ~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~-------------------  161 (190)
T 1tf6_A          101 KICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG-------------------  161 (190)
T ss_dssp             TTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS-------------------
T ss_pred             CcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC-------------------
Confidence            7899999  8999999999999999999 78999999  5 99999999999999999843                   


Q ss_pred             cccCc--cccccccccchhhhhhhhhcC
Q 008103          152 YASTN--NMALGLSQVGPQLSSIKDHHQ  177 (577)
Q Consensus       152 y~c~~--~C~~~fs~~ssl~~H~k~hh~  177 (577)
                      |.|..  .|++.|.....|..|+++|+.
T Consensus       162 ~~C~~~~~C~~~f~~~~~l~~H~~~h~~  189 (190)
T 1tf6_A          162 YPCKKDDSCSFVGKTWTLYLKHVAECHQ  189 (190)
T ss_dssp             CCCCSTTTCCCCCSCHHHHHHHHTTCC-
T ss_pred             CcCCCCCcCCCccccHHHHHHHHHhhcC
Confidence            55554  289999999999999998853

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.82  E-value=9.2e-21  Score=167.21  Aligned_cols=111  Identities=27%  Similarity=0.618  Sum_probs=101.5

Q ss_pred             CCCCccccc--ccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccC
Q 008103            1 MATNRFICE--VCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG   78 (577)
Q Consensus         1 t~~kpy~C~--~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htg   78 (577)
                      +++++|+|+  .|++.|.+...|..|+++|              ++++|.|++  |     ++.|.....|.+|+++|++
T Consensus         1 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h--------------~~~~~~C~~--C-----~~~f~~~~~l~~H~~~h~~   59 (124)
T 1ubd_C            1 MEPRTIACPHKGCTKMFRDNSAMRKHLHTH--------------GPRVHVCAE--C-----GKAFVESSKLKRHQLVHTG   59 (124)
T ss_dssp             ----CEECCSTTCCCEESSHHHHHHHHGGG--------------SCCCEECTT--T-----CCEESSHHHHHHHGGGTSC
T ss_pred             CCCCcccCCCCCCcCccCCHHHHHHHHHHc--------------CCCCeECCC--C-----CchhCCHHHHHHHHHHcCC
Confidence            578999999  8999999999999999987              468999999  9     9999999999999999999


Q ss_pred             CcccccCc--CCCcccchhhhhhhccc-cCCceeec--C-CCCCcCChhHHHHHHHHhcc
Q 008103           79 EKKWKCEK--CSKRYAVQSDWKAHSKT-CGTREYRC--D-CGTLFSRRDSFITHRAFCDA  132 (577)
Q Consensus        79 eKpykC~~--C~K~F~sks~L~~H~r~-hgeKpy~C--~-Cgk~F~~~s~L~~H~r~h~~  132 (577)
                      +++|+|.+  |++.|.....|..|+++ +++++|.|  + |++.|.++..|.+|+++|..
T Consensus        60 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~  119 (124)
T 1ubd_C           60 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK  119 (124)
T ss_dssp             CCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-
T ss_pred             CCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcc
Confidence            99999986  99999999999999999 89999999  6 99999999999999999954

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.82  E-value=3.1e-21  Score=176.12  Aligned_cols=102  Identities=25%  Similarity=0.442  Sum_probs=93.5

Q ss_pred             CCCCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103            1 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus         1 t~~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      .|+++|+|++|++.|.+...|..|+++|.             ++++|.|++  |     ++.|..+..|.+|+++|++++
T Consensus        18 ~Gek~y~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~k   77 (133)
T 2lt7_A           18 DGRVYYICIVCKRSYVCLTSLRRHFNIHS-------------WEKKYPCRY--C-----EKVFPLAEYRTKHEIHHTGER   77 (133)
T ss_dssp             TTEEEEEETTTCCEESCHHHHHHHHHHHH-------------CCSCEECSS--S-----SCEESSHHHHHHHHHHHHTCC
T ss_pred             CCCcCeECCCCCCCcCCHHHHHHHHHHcC-------------CCCCeeCCc--c-----CeecccccchhhhccccCCCc
Confidence            37899999999999999999999999996             889999999  9     999999999999999999999


Q ss_pred             ccccCcCCCcccchhhhhhhccc-cCC------ceeecC-CCCCcCChhH
Q 008103           81 KWKCEKCSKRYAVQSDWKAHSKT-CGT------REYRCD-CGTLFSRRDS  122 (577)
Q Consensus        81 pykC~~C~K~F~sks~L~~H~r~-hge------Kpy~C~-Cgk~F~~~s~  122 (577)
                      ||+|++|++.|..+..|..|+++ |++      ++|+|. |++.|.+...
T Consensus        78 ~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~~  127 (133)
T 2lt7_A           78 RYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYA  127 (133)
T ss_dssp             CEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCCH
T ss_pred             cccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhccc
Confidence            99999999999999999999998 765      468999 9999987543

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.81  E-value=2.7e-20  Score=170.71  Aligned_cols=117  Identities=21%  Similarity=0.335  Sum_probs=101.3

Q ss_pred             CCCcccccccccccCChHHHHHHHHh-cCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103            2 ATNRFICEVCNKGFQREQNLQLHRRG-HNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus         2 ~~kpy~C~~CgK~F~~~s~L~~H~r~-H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      ++++|+|++|++.|.+...|..|++. |.......     ......|.|+.  |     ++.|..+..|.+|+++|++++
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~-----~~~~~~~~C~~--C-----~~~f~~~~~l~~H~~~h~~~~   89 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQN-----NHVCYWEECPR--E-----GKSFKAKYKLVNHIRVHTGEK   89 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCS-----SCCCCBTTCTT--S-----SCCCSSHHHHHHHTHHHHCCC
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCcccC-----CccccccCCCC--c-----ccccCCHHHHHHHHHhcCCCC
Confidence            46789999999999999999999998 54110000     00112378988  8     999999999999999999999


Q ss_pred             ccccCc--CCCcccchhhhhhhccc-cCCceeecC---CCCCcCChhHHHHHHHHh
Q 008103           81 KWKCEK--CSKRYAVQSDWKAHSKT-CGTREYRCD---CGTLFSRRDSFITHRAFC  130 (577)
Q Consensus        81 pykC~~--C~K~F~sks~L~~H~r~-hgeKpy~C~---Cgk~F~~~s~L~~H~r~h  130 (577)
                      +|+|++  |++.|.....|..|+++ +++++|.|+   |++.|.++..|.+|+++|
T Consensus        90 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H  145 (155)
T 2rpc_A           90 PFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH  145 (155)
T ss_dssp             SEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTT
T ss_pred             cccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHh
Confidence            999998  99999999999999999 789999997   999999999999999999

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.78  E-value=2.7e-19  Score=156.95  Aligned_cols=115  Identities=22%  Similarity=0.371  Sum_probs=106.3

Q ss_pred             ccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc----cCCceeecC-CCCC
Q 008103           42 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT----CGTREYRCD-CGTL  116 (577)
Q Consensus        42 ~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~----hgeKpy~C~-Cgk~  116 (577)
                      .++++|.|++  |     ++.|.....|++|+++|+++++|+|++|++.|..+..|..|++.    .++++|.|+ |++.
T Consensus         3 ~~~~~~~C~~--C-----~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~   75 (124)
T 2dlq_A            3 SGSSGVECPT--C-----HKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQET   75 (124)
T ss_dssp             CCCSSCCCTT--T-----CCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCE
T ss_pred             CCCCCCCCCC--C-----CCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCc
Confidence            4678999999  9     99999999999999999999999999999999999999999984    477999999 9999


Q ss_pred             cCChhHHHHHHHHhccchhhhccCCCCcccccCcccccCccccccccccchhhhhhhhhcCCCC
Q 008103          117 FSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQTNQ  180 (577)
Q Consensus       117 F~~~s~L~~H~r~h~~~~~~s~~~~~~l~~~~~~~y~c~~~C~~~fs~~ssl~~H~k~hh~~~k  180 (577)
                      |.++..|.+|+++|                .++++|.|.. |++.|.....|..|++.+|.++.
T Consensus        76 f~~~~~l~~H~~~h----------------~~~~~~~C~~-C~~~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A           76 FRRRMELRLHMVSH----------------TGEMPYKCSS-CSQQFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             ESSHHHHHHHHHHH----------------SSSCSEECSS-SCCEESSHHHHHHHHHHTSSCSS
T ss_pred             cCCHHHHHHHHHHc----------------CCCCCccCCC-ccchhCCHHHHHHHHHHHCCCCC
Confidence            99999999999999                5677899999 99999999999999997766543

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.78  E-value=2.7e-19  Score=156.12  Aligned_cols=112  Identities=21%  Similarity=0.563  Sum_probs=104.5

Q ss_pred             ccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC--cCCCcccchhhhhhhccc-cCCceeecC-CCCCc
Q 008103           42 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE--KCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLF  117 (577)
Q Consensus        42 ~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~--~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F  117 (577)
                      .++++|.|+++.|     ++.|.....|.+|+++|+++++|+|+  .|++.|.....|..|+++ +++++|.|+ |++.|
T Consensus         2 ~~~~~~~C~~~~C-----~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   76 (119)
T 2jp9_A            2 SEKRPFMCAYPGC-----NKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKF   76 (119)
T ss_dssp             CSSCCBCCCSTTS-----CCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred             CCCeeeeCCCCCC-----cchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchh
Confidence            3678999997668     99999999999999999999999999  799999999999999999 899999999 99999


Q ss_pred             CChhHHHHHHHHhccchhhhccCCCCcccccCccccc--Cccccccccccchhhhhhhhh
Q 008103          118 SRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYAS--TNNMALGLSQVGPQLSSIKDH  175 (577)
Q Consensus       118 ~~~s~L~~H~r~h~~~~~~s~~~~~~l~~~~~~~y~c--~~~C~~~fs~~ssl~~H~k~h  175 (577)
                      .++..|.+|+++|                .++++|.|  .. |++.|.....|..|+++|
T Consensus        77 ~~~~~l~~H~~~h----------------~~~~~~~C~~~~-C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           77 SRSDHLKTHTRTH----------------TGEKPFSCRWPS-CQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             SCHHHHHHHHHHH----------------HTCCCEECCSTT-CCCEESSHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHh----------------cCCCCeeCCCCC-CccccCCHHHHHHHHhcC
Confidence            9999999999999                56678999  56 999999999999999875

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=3.5e-19  Score=162.74  Aligned_cols=112  Identities=27%  Similarity=0.538  Sum_probs=102.5

Q ss_pred             CCCccccccc-----ccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhc
Q 008103            2 ATNRFICEVC-----NKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRK   76 (577)
Q Consensus         2 ~~kpy~C~~C-----gK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~H   76 (577)
                      ++++|+|++|     ++.|.+...|..|+++|.             ++++|.|+++.|     ++.|.....|++|+++|
T Consensus        31 ~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-----~~~f~~~~~l~~H~~~h   92 (155)
T 2gli_A           31 ERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT-------------GEKPHKCTFEGC-----RKSYSRLENLKTHLRSH   92 (155)
T ss_dssp             CSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHH-------------CCCCCCCCSTTC-----CCCCSSHHHHHHHHHHT
T ss_pred             CCcceeCCCCCccchhhhhhhHHHHHHHHHhcC-------------CCCCccCCCCCC-----CCcccCHHHHHHHHHHc
Confidence            5789998753     499999999999999986             789999985448     99999999999999999


Q ss_pred             cCCcccccCc--CCCcccchhhhhhhc-cc-cCCceeecC---CCCCcCChhHHHHHHHHhc
Q 008103           77 HGEKKWKCEK--CSKRYAVQSDWKAHS-KT-CGTREYRCD---CGTLFSRRDSFITHRAFCD  131 (577)
Q Consensus        77 tgeKpykC~~--C~K~F~sks~L~~H~-r~-hgeKpy~C~---Cgk~F~~~s~L~~H~r~h~  131 (577)
                      +++++|+|++  |++.|..+..|..|+ ++ .++++|.|+   |++.|.++..|.+|+++|+
T Consensus        93 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A           93 TGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             TTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhc
Confidence            9999999998  999999999999999 66 688999994   9999999999999999985

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.76  E-value=4.2e-19  Score=161.97  Aligned_cols=112  Identities=23%  Similarity=0.378  Sum_probs=98.0

Q ss_pred             ccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           36 QKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        36 ~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      .+.+++.++++|+|++  |     ++.|.....|++|+++|++++||+|++|++.|.....|..|+++ ++++||.|+ |
T Consensus        12 h~~~~h~Gek~y~C~~--C-----~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   84 (133)
T 2lt7_A           12 HYELIVDGRVYYICIV--C-----KRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC   84 (133)
T ss_dssp             EEEEEETTEEEEEETT--T-----CCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSS
T ss_pred             hceeecCCCcCeECCC--C-----CCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCC
Confidence            3456678999999999  9     99999999999999999999999999999999999999999999 799999999 9


Q ss_pred             CCCcCChhHHHHHHHHhccchhhhccCCCCcccccCcccccCcccccccccc
Q 008103          114 GTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQV  165 (577)
Q Consensus       114 gk~F~~~s~L~~H~r~h~~~~~~s~~~~~~l~~~~~~~y~c~~~C~~~fs~~  165 (577)
                      ++.|.+++.|.+|+++|+...+          ....++|.|.. |.+.|...
T Consensus        85 ~k~F~~~~~L~~H~~~hh~~~p----------~~~~k~~~C~~-C~k~~~~~  125 (133)
T 2lt7_A           85 GKSFINYQFMSSHIKSVHSQDP----------SGDSKLYRLHP-CRSLQIRQ  125 (133)
T ss_dssp             CCEESSHHHHHHHHHHHTCCCT----------TSSSCCEEECC-CCSSCCCC
T ss_pred             CCCcCCHHHHHHHhHHhcCCCC----------CCCCCCeecCC-CCchhhhc
Confidence            9999999999999999865321          12345788888 88777543

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.72  E-value=1.2e-17  Score=147.25  Aligned_cols=113  Identities=24%  Similarity=0.498  Sum_probs=100.8

Q ss_pred             cCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC---CCCCcC
Q 008103           43 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD---CGTLFS  118 (577)
Q Consensus        43 ~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~---Cgk~F~  118 (577)
                      .+++|.|++..|     ++.|.....|.+|+++| ++++|+|++|++.|.....|..|+++ +++++|.|.   |++.|.
T Consensus         2 ~~~~~~C~~~~C-----~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~   75 (124)
T 1ubd_C            2 EPRTIACPHKGC-----TKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFS   75 (124)
T ss_dssp             ---CEECCSTTC-----CCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEES
T ss_pred             CCCcccCCCCCC-----cCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccC
Confidence            467899994338     99999999999999999 89999999999999999999999999 789999994   999999


Q ss_pred             ChhHHHHHHHHhccchhhhccCCCCcccccCcccccC-ccccccccccchhhhhhhhhcC
Q 008103          119 RRDSFITHRAFCDALAQESARHQPSLSAIGSHLYAST-NNMALGLSQVGPQLSSIKDHHQ  177 (577)
Q Consensus       119 ~~s~L~~H~r~h~~~~~~s~~~~~~l~~~~~~~y~c~-~~C~~~fs~~ssl~~H~k~hh~  177 (577)
                      +...|.+|+++|                .++++|.|. ..|++.|.....|..|+++|+.
T Consensus        76 ~~~~l~~H~~~h----------------~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~  119 (124)
T 1ubd_C           76 LDFNLRTHVRIH----------------TGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK  119 (124)
T ss_dssp             CHHHHHHHHHHH----------------HCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-
T ss_pred             CHHHHHHHHHHh----------------CCCCceECCCCCCCCccCCHHHHHHHHHHHcc
Confidence            999999999999                556789997 3599999999999999999843

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.71  E-value=1.2e-17  Score=143.45  Aligned_cols=88  Identities=26%  Similarity=0.586  Sum_probs=60.0

Q ss_pred             CCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCccc
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKW   82 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpy   82 (577)
                      +++|+|++|++.|.+...|..|+++|.             ++++|.|++  |     ++.|.....|.+|+++|+++++|
T Consensus        15 ~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~--C-----~~~f~~~~~l~~H~~~h~~~~~~   74 (106)
T 2ee8_A           15 KKEFICKFCGRHFTKSYNLLIHERTHT-------------DERPYTCDI--C-----HKAFRRQDHLRDHRYIHSKEKPF   74 (106)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHHHHC-------------CSCCCBCSS--S-----CCBCSCHHHHHHHGGGSCCCCTT
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHHcC-------------CCCCcCCCC--c-----cchhCCHHHHHHHHHHhCCCCCe
Confidence            456777777777777777777766664             556677766  6     67777777777777777766777


Q ss_pred             ccCcCCCcccchhhhhhhccc-cCCceee
Q 008103           83 KCEKCSKRYAVQSDWKAHSKT-CGTREYR  110 (577)
Q Consensus        83 kC~~C~K~F~sks~L~~H~r~-hgeKpy~  110 (577)
                      +|++|++.|.....|..|+++ +++++|.
T Consensus        75 ~C~~C~~~f~~~~~L~~H~~~H~~~~~~~  103 (106)
T 2ee8_A           75 KCQECGKGFCQSRTLAVHKTLHMQTSSPT  103 (106)
T ss_dssp             SCSSSCCCCSSHHHHHHHHHHTTSCCCCC
T ss_pred             ECCCcCCcccCHHHHHHHHHHhCCCCCCc
Confidence            777777777777777777666 5666654

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=2.4e-17  Score=138.80  Aligned_cols=87  Identities=30%  Similarity=0.575  Sum_probs=69.1

Q ss_pred             CCCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcc
Q 008103            2 ATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKK   81 (577)
Q Consensus         2 ~~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKp   81 (577)
                      +++||+|++|++.|.+...|..|+++|.             .+++|.|++  |     ++.|.....|.+|+++|+++++
T Consensus         5 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~--C-----~~~f~~~~~l~~H~~~h~~~~~   64 (96)
T 2dmd_A            5 SSGPHKCEVCGKCFSRKDKLKTHMRCHT-------------GVKPYKCKT--C-----DYAAADSSSLNKHLRIHSDERP   64 (96)
T ss_dssp             CCCCCCBTTTTBCCCCHHHHHHHGGGCC-------------CCCSEECSS--S-----CCEESSHHHHHHHHHHSCCCCC
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHhcC-------------CCCCEeCCC--C-----CCccCCHHHHHHHHHHhCCCCC
Confidence            5678888888888888888888888775             667788887  7     7888888888888888888888


Q ss_pred             cccCcCCCcccchhhhhhhccc-cCCce
Q 008103           82 WKCEKCSKRYAVQSDWKAHSKT-CGTRE  108 (577)
Q Consensus        82 ykC~~C~K~F~sks~L~~H~r~-hgeKp  108 (577)
                      |+|++|++.|.....|..|+++ +++++
T Consensus        65 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           65 FKCQICPYASRNSSQLTVHLRSHTGDSG   92 (96)
T ss_dssp             EECSSSSCEESSHHHHHHHHTTCCSCCC
T ss_pred             ccCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence            8888888888888888888877 56554

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.69  E-value=4.3e-17  Score=149.33  Aligned_cols=120  Identities=15%  Similarity=0.349  Sum_probs=108.2

Q ss_pred             ccCceeeCCCCCccCCCCCCccCChhhHHhHhhh-ccCCcc--------cccCcCCCcccchhhhhhhccc-cCCceeec
Q 008103           42 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSR-KHGEKK--------WKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  111 (577)
Q Consensus        42 ~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~-HtgeKp--------ykC~~C~K~F~sks~L~~H~r~-hgeKpy~C  111 (577)
                      ..+.+|.|+.  |     ++.|.....|.+|+++ |.++++        |+|++|++.|.....|..|+++ +++++|.|
T Consensus        21 ~~~~~~~C~~--C-----~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   93 (155)
T 2rpc_A           21 EAQLSRPKKS--C-----DRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPC   93 (155)
T ss_dssp             TTCCSSSCCC--C-----CCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEEC
T ss_pred             hhhccccccc--C-----CcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccC
Confidence            4678899999  9     9999999999999998 776655        8999999999999999999999 79999999


Q ss_pred             C---CCCCcCChhHHHHHHHHhccchhhhccCCCCcccccCcccccCc-cccccccccchhhhhhhhhcCCCCCcccc
Q 008103          112 D---CGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTN-NMALGLSQVGPQLSSIKDHHQTNQSGDIL  185 (577)
Q Consensus       112 ~---Cgk~F~~~s~L~~H~r~h~~~~~~s~~~~~~l~~~~~~~y~c~~-~C~~~fs~~ssl~~H~k~hh~~~kp~~c~  185 (577)
                      +   |++.|.++..|.+|+++|                .++++|.|.. .|++.|.....|..|+++| .+++||.|.
T Consensus        94 ~~~~C~~~f~~~~~L~~H~~~h----------------~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H-~~~k~~~c~  154 (155)
T 2rpc_A           94 PFPGCGKIFARSENLKIHKRTH----------------TGEKPFKCEFEGCDRRFANSSDRKKHMHVH-TSDKSGPSS  154 (155)
T ss_dssp             SCTTTCCEESCHHHHHHHHTTT----------------CSSCSBCCSSTTCCCCBSSHHHHHHSSTTT-TSCCCSCSC
T ss_pred             CcCCCCCccCCHHHHHHHHHhh----------------CCCCCccCCCCCCCCccCCHHHHHHHHHHh-cCCCCCCCC
Confidence            6   999999999999999998                5677899995 6999999999999999987 567888874

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.67  E-value=4.5e-17  Score=140.68  Aligned_cols=89  Identities=19%  Similarity=0.268  Sum_probs=70.8

Q ss_pred             CCCCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103            1 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus         1 t~~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      +++++|+|++|++.|.....|..|+++|.               ++|.|++  |     ++.|.....|++|++ |++++
T Consensus        12 ~~~~~~~C~~C~~~f~~~~~l~~H~~~H~---------------~~~~C~~--C-----~~~f~~~~~l~~H~~-H~~~~   68 (107)
T 1wjp_A           12 ENKEVYQCRLCNAKLSSLLEQGSHERLCR---------------NAAVCPY--C-----SLRFFSPELKQEHES-KCEYK   68 (107)
T ss_dssp             CCCCCCBCTTTCCBCSSHHHHHHHHHHHH---------------HSBCCTT--T-----CCCBSSHHHHHHHHH-HCSTG
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHCC---------------CCccCCC--C-----CCccCCHHHHHHHHH-cCCCC
Confidence            35778888888888888888888888763               5788888  7     888888888888885 88888


Q ss_pred             ccccCcCCCcccchhhhhhhcc-c-cCCceeecC
Q 008103           81 KWKCEKCSKRYAVQSDWKAHSK-T-CGTREYRCD  112 (577)
Q Consensus        81 pykC~~C~K~F~sks~L~~H~r-~-hgeKpy~C~  112 (577)
                      ||+|++|++.|..+..|+.|++ + .++++|.|.
T Consensus        69 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           69 KLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             GGEEGGGTEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             CccCccccchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            8888888888888888888886 5 567777764

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.65  E-value=6.7e-17  Score=134.22  Aligned_cols=86  Identities=24%  Similarity=0.579  Sum_probs=62.9

Q ss_pred             CCCccccc--ccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCC
Q 008103            2 ATNRFICE--VCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE   79 (577)
Q Consensus         2 ~~kpy~C~--~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htge   79 (577)
                      +++||+|+  .|++.|.+...|..|+++|.             ++++|.|+.  |     ++.|.....|+.|+++|+++
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~--C-----~~~f~~~~~l~~H~~~h~~~   60 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHT-------------GQKPFQCRI--C-----MRNFSRSDHLTTHIRTHTGE   60 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHH-------------CCCCEECTT--T-----CCEESCHHHHHHHHHHHHCC
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhC-------------CCCCccCCC--C-----CcccCCHHHHHHHHHHcCCC
Confidence            46777886  48888888888888877774             567777777  7     77777777777787777777


Q ss_pred             cccccCcCCCcccchhhhhhhccc-cCCc
Q 008103           80 KKWKCEKCSKRYAVQSDWKAHSKT-CGTR  107 (577)
Q Consensus        80 KpykC~~C~K~F~sks~L~~H~r~-hgeK  107 (577)
                      ++|+|++|++.|..+..|..|+++ +++|
T Consensus        61 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           61 KPFACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            777777777777777777777777 5544

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.65  E-value=1.5e-16  Score=133.68  Aligned_cols=81  Identities=26%  Similarity=0.577  Sum_probs=56.0

Q ss_pred             CCCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCC--
Q 008103            2 ATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE--   79 (577)
Q Consensus         2 ~~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htge--   79 (577)
                      ++++|+|++|++.|.+...|..|+++|.             .+++|.|++  |     ++.|..+..|.+|+++|+++  
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~--C-----~~~f~~~~~l~~H~~~h~~~~~   63 (95)
T 2yt9_A            4 GSSGVACEICGKIFRDVYHLNRHKLSHS-------------GEKPYSCPV--C-----GLRFKRKDRMSYHVRSHDGSVG   63 (95)
T ss_dssp             CCSCEECSSSCCEESSSHHHHHHHHHSC-------------SSCSEECSS--S-----CCEESCHHHHHHHHHHHCCCCC
T ss_pred             CCCCeECCCCCCccCChHHHHHHHHhcC-------------CCCCCcCCC--C-----CCccCCHHHHHHHHHHhcCCCC
Confidence            5667777777777777777777777664             556677776  6     67777777777777777665  


Q ss_pred             cccccCcCCCcccchhhhhhhcc
Q 008103           80 KKWKCEKCSKRYAVQSDWKAHSK  102 (577)
Q Consensus        80 KpykC~~C~K~F~sks~L~~H~r  102 (577)
                      ++|+|++|++.|..+..|..|++
T Consensus        64 ~~~~C~~C~~~f~~~~~L~~H~~   86 (95)
T 2yt9_A           64 KPYICQSCGKGFSRPDHLNGHIK   86 (95)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHHH
T ss_pred             CceECCCccchhCCHHHHHHHHH
Confidence            66666666666666666666665

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.64  E-value=3.1e-16  Score=134.57  Aligned_cols=84  Identities=19%  Similarity=0.526  Sum_probs=80.3

Q ss_pred             ccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-CCCCcCC
Q 008103           42 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSR  119 (577)
Q Consensus        42 ~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~~  119 (577)
                      ..+++|.|++  |     ++.|.....|.+|+++|+++++|+|++|++.|.....|..|+++ +++++|.|+ |++.|.+
T Consensus        13 ~~~~~~~C~~--C-----~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   85 (106)
T 2ee8_A           13 KTKKEFICKF--C-----GRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQ   85 (106)
T ss_dssp             CCCCCCBCSS--S-----CCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSS
T ss_pred             CCCcCeECCC--C-----CCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccC
Confidence            4678999999  9     99999999999999999999999999999999999999999999 789999999 9999999


Q ss_pred             hhHHHHHHHHhcc
Q 008103          120 RDSFITHRAFCDA  132 (577)
Q Consensus       120 ~s~L~~H~r~h~~  132 (577)
                      +..|.+|+++|..
T Consensus        86 ~~~L~~H~~~H~~   98 (106)
T 2ee8_A           86 SRTLAVHKTLHMQ   98 (106)
T ss_dssp             HHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999999944

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.64  E-value=1.5e-16  Score=132.07  Aligned_cols=85  Identities=25%  Similarity=0.631  Sum_probs=78.7

Q ss_pred             cCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-CCCCcCCh
Q 008103           43 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRR  120 (577)
Q Consensus        43 ~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~~~  120 (577)
                      ++++|.|++..|     ++.|.....|.+|+++|+++++|+|++|++.|.....|..|+++ +++++|.|+ |++.|.++
T Consensus         1 ~~k~~~C~~~~C-----~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   75 (90)
T 1a1h_A            1 MERPYACPVESC-----DRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS   75 (90)
T ss_dssp             --CCEECCSSSC-----CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSH
T ss_pred             CCCceECCCCCC-----CCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCH
Confidence            368999985448     99999999999999999999999999999999999999999999 899999999 99999999


Q ss_pred             hHHHHHHHHhcc
Q 008103          121 DSFITHRAFCDA  132 (577)
Q Consensus       121 s~L~~H~r~h~~  132 (577)
                      +.|.+|+++|..
T Consensus        76 ~~l~~H~~~H~~   87 (90)
T 1a1h_A           76 DERKRHTKIHLR   87 (90)
T ss_dssp             HHHHHHHGGGGC
T ss_pred             HHHHHHHHHhcc
Confidence            999999999854

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=3.6e-16  Score=135.26  Aligned_cols=88  Identities=26%  Similarity=0.609  Sum_probs=82.6

Q ss_pred             ccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-CCCCc
Q 008103           40 KEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLF  117 (577)
Q Consensus        40 ~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F  117 (577)
                      .|.++++|.| .  |     ++.|.....|.+|+++|+++++|+|++|++.|.....|..|+++ +++++|.|+ |++.|
T Consensus         4 ~h~~~k~~~C-~--C-----~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   75 (110)
T 2csh_A            4 GSSGDKLYPC-Q--C-----GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF   75 (110)
T ss_dssp             CCCCCCCEEC-T--T-----SCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEE
T ss_pred             CCCCCCCEec-c--C-----CCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchh
Confidence            4568999999 8  9     99999999999999999999999999999999999999999999 789999999 99999


Q ss_pred             CChhHHHHHHHHhccchh
Q 008103          118 SRRDSFITHRAFCDALAQ  135 (577)
Q Consensus       118 ~~~s~L~~H~r~h~~~~~  135 (577)
                      .++..|.+|++.|+....
T Consensus        76 ~~~~~l~~H~~~~~~~~~   93 (110)
T 2csh_A           76 MWRDSFHRHVTSCTKSYE   93 (110)
T ss_dssp             SCHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcccccc
Confidence            999999999999976443

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.63  E-value=2.7e-16  Score=132.33  Aligned_cols=84  Identities=19%  Similarity=0.378  Sum_probs=80.5

Q ss_pred             ccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-CCCCcCC
Q 008103           42 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSR  119 (577)
Q Consensus        42 ~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~~  119 (577)
                      .++++|.|++  |     ++.|.....|.+|+++|+++++|+|++|++.|.....|..|+++ +++++|.|+ |++.|.+
T Consensus         4 ~~~~~~~C~~--C-----~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   76 (96)
T 2dmd_A            4 GSSGPHKCEV--C-----GKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRN   76 (96)
T ss_dssp             CCCCCCCBTT--T-----TBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESS
T ss_pred             CCCcCeECCC--C-----CCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCC
Confidence            4789999999  9     99999999999999999999999999999999999999999999 789999999 9999999


Q ss_pred             hhHHHHHHHHhcc
Q 008103          120 RDSFITHRAFCDA  132 (577)
Q Consensus       120 ~s~L~~H~r~h~~  132 (577)
                      +..|.+|+++|+.
T Consensus        77 ~~~l~~H~~~h~~   89 (96)
T 2dmd_A           77 SSQLTVHLRSHTG   89 (96)
T ss_dssp             HHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999999854

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.62  E-value=1.9e-16  Score=128.99  Aligned_cols=79  Identities=32%  Similarity=0.646  Sum_probs=45.9

Q ss_pred             cccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCccccc
Q 008103            5 RFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKC   84 (577)
Q Consensus         5 py~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC   84 (577)
                      ||+|++|++.|.+...|..|+++|.             ++++|.|+.  |     ++.|..+..|.+|+++|+++++|+|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~--C-----~~~f~~~~~l~~H~~~h~~~~~~~C   60 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHS-------------DTRPYPCQY--C-----GKRFHQKSDMKKHTFIHTGEKPHKC   60 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH-------------TCCCEECSS--S-----CCEESSHHHHHHHHHHHHTCCCEEC
T ss_pred             CccCCCCcccccCchhHHHHHHHcC-------------CCCCeeCCc--C-----ChhhCCHHHHHHHHHHhcCCCCCcC
Confidence            4556666666666666666655553             445556655  5     5556655666666655555555555


Q ss_pred             CcCCCcccchhhhhhhccc
Q 008103           85 EKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        85 ~~C~K~F~sks~L~~H~r~  103 (577)
                      ++|++.|..+..|..|+++
T Consensus        61 ~~C~~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A           61 QVCGKAFSQSSNLITHSRK   79 (82)
T ss_dssp             TTTSCEESSHHHHHHHHHH
T ss_pred             CCcchhhCChHHHHHHHHh
Confidence            5555555555555555554

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=3.1e-16  Score=135.59  Aligned_cols=82  Identities=21%  Similarity=0.463  Sum_probs=78.9

Q ss_pred             CCCCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103            1 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus         1 t~~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      +++++|+| +|++.|.+...|..|++.|.             .+++|.|++  |     ++.|..+..|.+|+++|++++
T Consensus         6 ~~~k~~~C-~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~--C-----~~~f~~~~~l~~H~~~h~~~~   64 (110)
T 2csh_A            6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHL-------------GLRPYGCGV--C-----GKKFKMKHHLVGHMKIHTGIK   64 (110)
T ss_dssp             CCCCCEEC-TTSCEESSHHHHHHHHHHHS-------------CCCSEECTT--T-----SCEESSSHHHHHHHTTTCCCC
T ss_pred             CCCCCEec-cCCCccCCHHHHHHHHHHcC-------------CCcCccCCC--C-----CcccCCHHHHHHHHHHcCCCC
Confidence            47899999 99999999999999999996             788999999  9     999999999999999999999


Q ss_pred             ccccCcCCCcccchhhhhhhccc
Q 008103           81 KWKCEKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        81 pykC~~C~K~F~sks~L~~H~r~  103 (577)
                      +|+|++|++.|..+..|..|+++
T Consensus        65 ~~~C~~C~~~f~~~~~l~~H~~~   87 (110)
T 2csh_A           65 PYECNICAKRFMWRDSFHRHVTS   87 (110)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHH
T ss_pred             CeeCCCCcchhcCHHHHHHHHHH
Confidence            99999999999999999999998

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=5e-16  Score=135.40  Aligned_cols=92  Identities=15%  Similarity=0.243  Sum_probs=83.3

Q ss_pred             ccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhh--ccCCcccc-cCcCCCcc--cchhhhhhhccc-cCCc
Q 008103           34 LKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSR--KHGEKKWK-CEKCSKRY--AVQSDWKAHSKT-CGTR  107 (577)
Q Consensus        34 ~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~--HtgeKpyk-C~~C~K~F--~sks~L~~H~r~-hgeK  107 (577)
                      ++.|++.|.++++|.|++  |     ++.|..+..|++|+++  |.+++++. |++|++.|  ..+..|..|+++ ++++
T Consensus         7 l~~H~~~H~~~~~~~C~~--C-----~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~   79 (115)
T 2dmi_A            7 GKLYGSIFTGASKFRCKD--C-----SAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK   79 (115)
T ss_dssp             CCCCCCCCCCCCSEEBSS--S-----SCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCS
T ss_pred             hhhheeeeCCCCCEECCc--c-----CchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCc
Confidence            455566667999999999  9     9999999999999999  88887755 99999999  999999999999 7899


Q ss_pred             eeecC-CCCCcCChhHHHHHHHHhcc
Q 008103          108 EYRCD-CGTLFSRRDSFITHRAFCDA  132 (577)
Q Consensus       108 py~C~-Cgk~F~~~s~L~~H~r~h~~  132 (577)
                      ||.|+ |++.|.++..|.+|+++|+.
T Consensus        80 ~~~C~~C~k~f~~~~~L~~H~~~hh~  105 (115)
T 2dmi_A           80 VLKCMYCGHSFESLQDLSVHMIKTKH  105 (115)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHHHTTT
T ss_pred             ceECCCCCCccCCHHHHHHHHHHhCC
Confidence            99999 99999999999999999865

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.61  E-value=3.9e-16  Score=127.12  Aligned_cols=79  Identities=25%  Similarity=0.591  Sum_probs=76.4

Q ss_pred             eeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-CCCCcCChhHH
Q 008103           46 VYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSF  123 (577)
Q Consensus        46 py~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~~~s~L  123 (577)
                      ||.|++  |     ++.|.....|.+|+++|+++++|+|++|++.|..+..|..|+++ +++++|.|+ |++.|.+++.|
T Consensus         1 ~~~C~~--C-----~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   73 (82)
T 2kmk_A            1 SFDCKI--C-----GKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL   73 (82)
T ss_dssp             CEECSS--S-----CCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHH
T ss_pred             CccCCC--C-----cccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHH
Confidence            689999  9     99999999999999999999999999999999999999999999 899999999 99999999999


Q ss_pred             HHHHHHhc
Q 008103          124 ITHRAFCD  131 (577)
Q Consensus       124 ~~H~r~h~  131 (577)
                      .+|+++|.
T Consensus        74 ~~H~~~H~   81 (82)
T 2kmk_A           74 ITHSRKHT   81 (82)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhhC
Confidence            99999984

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=3.3e-16  Score=136.54  Aligned_cols=92  Identities=13%  Similarity=0.250  Sum_probs=80.2

Q ss_pred             CCCCcccccccccccCChHHHHHHHHh--cCCCccccccccccccCcee-eCCCCCccCCCCCCcc--CChhhHHhHhhh
Q 008103            1 MATNRFICEVCNKGFQREQNLQLHRRG--HNLPWKLKQKTTKEVKRKVY-LCPEPTCVHHDPSRAL--GDLTGIKKHYSR   75 (577)
Q Consensus         1 t~~kpy~C~~CgK~F~~~s~L~~H~r~--H~~p~~~~~h~~~~~~ekpy-~C~~~~C~~~~~~k~F--~~~s~Lk~H~r~   75 (577)
                      ++++||+|++|++.|.++..|..|+++  |.             .++++ .|++  |     ++.|  ..+..|.+|+++
T Consensus        15 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~-------------~~~~~~~C~~--C-----~~~f~f~~~~~l~~H~~~   74 (115)
T 2dmi_A           15 TGASKFRCKDCSAAYDTLVELTVHMNETGHY-------------RDDNHETDNN--N-----PKRWSKPRKRSLLEMEGK   74 (115)
T ss_dssp             CCCCSEEBSSSSCEESSHHHHHHHHHHTCCC-------------BCSCCCCCCC--C-----CSCCSSCCCCCCCCCCCS
T ss_pred             CCCCCEECCccCchhcCHHHHHHHHHHhCcc-------------ccCCCccCCC--C-----CcccccccHHHHHHHhhc
Confidence            468999999999999999999999998  53             44544 5999  8     8888  899999999999


Q ss_pred             ccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           76 KHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        76 HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      |++++||+|++|++.|..+..|..|+++ +......++
T Consensus        75 H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~  112 (115)
T 2dmi_A           75 EDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP  112 (115)
T ss_dssp             CCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTCSCCC
T ss_pred             cCCCcceECCCCCCccCCHHHHHHHHHHhCCcccCCCC
Confidence            9999999999999999999999999998 655544443

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.59  E-value=1.3e-15  Score=127.78  Aligned_cols=82  Identities=26%  Similarity=0.547  Sum_probs=77.6

Q ss_pred             ccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc-cCC--ceeecC-CCCCc
Q 008103           42 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGT--REYRCD-CGTLF  117 (577)
Q Consensus        42 ~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hge--Kpy~C~-Cgk~F  117 (577)
                      .++++|.|++  |     ++.|.....|.+|+++|+++++|+|++|++.|..+..|..|+++ +++  ++|.|+ |++.|
T Consensus         3 ~~~~~~~C~~--C-----~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f   75 (95)
T 2yt9_A            3 SGSSGVACEI--C-----GKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGF   75 (95)
T ss_dssp             CCCSCEECSS--S-----CCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCB
T ss_pred             CCCCCeECCC--C-----CCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchh
Confidence            4789999999  9     99999999999999999999999999999999999999999999 666  999999 99999


Q ss_pred             CChhHHHHHHH-Hh
Q 008103          118 SRRDSFITHRA-FC  130 (577)
Q Consensus       118 ~~~s~L~~H~r-~h  130 (577)
                      .++..|.+|++ +|
T Consensus        76 ~~~~~L~~H~~~~H   89 (95)
T 2yt9_A           76 SRPDHLNGHIKQVH   89 (95)
T ss_dssp             SSHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHhc
Confidence            99999999997 55

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.58  E-value=1.5e-15  Score=125.80  Aligned_cols=84  Identities=24%  Similarity=0.606  Sum_probs=63.9

Q ss_pred             CCcccccc--cccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103            3 TNRFICEV--CNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus         3 ~kpy~C~~--CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      +++|+|++  |++.|.....|..|+++|.             ++++|.|++..|     ++.|.....|.+|+++|++++
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-----~~~f~~~~~l~~H~~~h~~~~   64 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHT-------------GEKPYHCDWDGC-----GWKFARSDELTRHYRKHTGHR   64 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSC-------------SSCCEECCSTTT-----CCEESSHHHHHHHHHHHHCCC
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcC-------------CCCCcCCCCCCC-----CCccCCHHHHHHHHHHcCCCC
Confidence            46778877  8888888888888887775             667788863337     788888888888888888888


Q ss_pred             ccccCcCCCcccchhhhhhhcccc
Q 008103           81 KWKCEKCSKRYAVQSDWKAHSKTC  104 (577)
Q Consensus        81 pykC~~C~K~F~sks~L~~H~r~h  104 (577)
                      +|+|++|++.|.....|..|+++|
T Consensus        65 ~~~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           65 PFQCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             CEECSSSSCEESSHHHHHHHGGGG
T ss_pred             CccCCCCCcccCCHHHHHHHHHhh
Confidence            888888888888877777777653

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.58  E-value=1e-15  Score=132.04  Aligned_cols=85  Identities=21%  Similarity=0.359  Sum_probs=78.2

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccccCCceeecC-CCC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD-CGT  115 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~hgeKpy~C~-Cgk  115 (577)
                      +.+.+.++++|.|++  |     ++.|.....|++|+++|  +++|+|++|++.|.....|+.|++-+++++|.|+ |++
T Consensus         7 ~~~~h~~~~~~~C~~--C-----~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~H~~~~~~~C~~C~~   77 (107)
T 1wjp_A            7 GASPVENKEVYQCRL--C-----NAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMR   77 (107)
T ss_dssp             CCCCCCCCCCCBCTT--T-----CCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHHHCSTGGGEEGGGTE
T ss_pred             cCcccCCCcCeECCC--C-----CCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHHcCCCCCccCccccc
Confidence            345667899999999  9     99999999999999999  5899999999999999999999953789999999 999


Q ss_pred             CcCChhHHHHHHH-Hh
Q 008103          116 LFSRRDSFITHRA-FC  130 (577)
Q Consensus       116 ~F~~~s~L~~H~r-~h  130 (577)
                      .|.++..|.+|++ +|
T Consensus        78 ~f~~~~~L~~H~~~~H   93 (107)
T 1wjp_A           78 TFKSSFSIWRHQVEVH   93 (107)
T ss_dssp             ECSSHHHHHHHHHHTS
T ss_pred             hhCCHHHHHHHHHHHc
Confidence            9999999999998 66

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.58  E-value=2.2e-15  Score=127.38  Aligned_cols=84  Identities=29%  Similarity=0.651  Sum_probs=58.8

Q ss_pred             cCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC--cCCCcccchhhhhhhccc-cCCceeecC-CCCCcC
Q 008103           43 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE--KCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFS  118 (577)
Q Consensus        43 ~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~--~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~  118 (577)
                      .+++|.|+++.|     ++.|.....|.+|+++|+++++|+|.  .|++.|.....|..|+++ +++++|.|+ |++.|.
T Consensus        12 ~~~~~~C~~~~C-----~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   86 (100)
T 2ebt_A           12 KRRIHYCDYPGC-----TKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFS   86 (100)
T ss_dssp             SCCCEECCSSSC-----CCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCS
T ss_pred             cCcceEcCCCCC-----CCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccC
Confidence            456677765556     77777777777777777777777774  477777777777777766 666777777 777777


Q ss_pred             ChhHHHHHHHHhc
Q 008103          119 RRDSFITHRAFCD  131 (577)
Q Consensus       119 ~~s~L~~H~r~h~  131 (577)
                      ++..|.+|+++|.
T Consensus        87 ~~~~l~~H~~~H~   99 (100)
T 2ebt_A           87 RSDHLALHMKRHQ   99 (100)
T ss_dssp             SHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhC
Confidence            7777777777663

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.57  E-value=2.5e-15  Score=127.09  Aligned_cols=66  Identities=21%  Similarity=0.493  Sum_probs=55.2

Q ss_pred             ccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhcccc
Q 008103           34 LKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTC  104 (577)
Q Consensus        34 ~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~h  104 (577)
                      +..|++.|.++++|.|++..|     ++.|.....|.+|+++|+++++|+|++|++.|..+..|..|+++|
T Consensus        33 l~~H~~~h~~~~~~~C~~~~C-----~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   98 (100)
T 2ebt_A           33 LKAHLRTHTGEKPYKCTWEGC-----DWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH   98 (100)
T ss_dssp             HHHHHHHHSCCCCEECCSSSC-----CCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCeeCCCCCC-----CCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHHHHHHHh
Confidence            445777888888899974337     899999999999999999999999999999999999999998873

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.54  E-value=4.3e-15  Score=122.99  Aligned_cols=83  Identities=24%  Similarity=0.575  Sum_probs=78.0

Q ss_pred             cCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC--cCCCcccchhhhhhhccc-cCCceeecC-CCCCcC
Q 008103           43 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE--KCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFS  118 (577)
Q Consensus        43 ~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~--~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~  118 (577)
                      ..++|.|+++.|     ++.|.....|.+|+++|+++++|+|+  .|++.|.....|..|+++ +++++|.|+ |++.|.
T Consensus         2 ~~~~~~C~~~~C-----~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   76 (89)
T 2wbs_A            2 RTATHTCDYAGC-----GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFS   76 (89)
T ss_dssp             -CCCEECCSTTT-----CCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEES
T ss_pred             CCCCeeCCCCCC-----CCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccC
Confidence            357899998778     99999999999999999999999997  599999999999999999 899999999 999999


Q ss_pred             ChhHHHHHHHHh
Q 008103          119 RRDSFITHRAFC  130 (577)
Q Consensus       119 ~~s~L~~H~r~h  130 (577)
                      .++.|.+|+++|
T Consensus        77 ~~~~l~~H~~~H   88 (89)
T 2wbs_A           77 RSDHLALHMKRH   88 (89)
T ss_dssp             SHHHHHHHGGGG
T ss_pred             CHHHHHHHHHhh
Confidence            999999999887

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=7.5e-15  Score=119.20  Aligned_cols=74  Identities=23%  Similarity=0.561  Sum_probs=60.4

Q ss_pred             CCCCcccccc--cccccCChHHHHHHHH-hcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhcc
Q 008103            1 MATNRFICEV--CNKGFQREQNLQLHRR-GHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKH   77 (577)
Q Consensus         1 t~~kpy~C~~--CgK~F~~~s~L~~H~r-~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Ht   77 (577)
                      +++++|+|+.  |++.|.++..|+.|++ .|.             ++++|.|+++.|     ++.|..+..|++|+++|+
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~-------------~~~~~~C~~~~C-----~k~f~~~~~L~~H~~~H~   64 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHI-------------HQKSFSCPEPAC-----GKSFNFKKHLKEHMKLHS   64 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGG-------------SCCCEECSCTTT-----CCEESSHHHHHHHHHHHH
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhC-------------CCCCeECCCCCC-----cCccCCHHHHHHHHHHhC
Confidence            4678888886  8888888888888888 564             678888887667     888888888888888888


Q ss_pred             CCcccccCcCCCccc
Q 008103           78 GEKKWKCEKCSKRYA   92 (577)
Q Consensus        78 geKpykC~~C~K~F~   92 (577)
                      +++||+|++|++.|.
T Consensus        65 ~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A           65 DTRDYICEFSGPSSG   79 (79)
T ss_dssp             TSCCCSCCSSSCCCC
T ss_pred             CCCCeeCCCCCCCCC
Confidence            888888888888873

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.50  E-value=1.2e-15  Score=127.25  Aligned_cols=83  Identities=22%  Similarity=0.372  Sum_probs=78.2

Q ss_pred             CceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccccCCceeecC-CCCCcCChhH
Q 008103           44 RKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDS  122 (577)
Q Consensus        44 ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~hgeKpy~C~-Cgk~F~~~s~  122 (577)
                      ++||.|++  |     ++.|.....|.+|+++|++++||+|++|++.|.....|..|++++..++|.|+ |++.|..+..
T Consensus         1 ek~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~   73 (88)
T 1llm_C            1 MKPFQCRI--C-----MRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYH   73 (88)
T ss_dssp             CCCEECTT--T-----CCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCC--C-----CCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhh
Confidence            57999999  9     99999999999999999999999999999999999999999999556999999 9999999999


Q ss_pred             HHHHHHHhccc
Q 008103          123 FITHRAFCDAL  133 (577)
Q Consensus       123 L~~H~r~h~~~  133 (577)
                      |.+|++.++..
T Consensus        74 L~~H~~~~h~~   84 (88)
T 1llm_C           74 LENEVARLKKL   84 (88)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            99999987654

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.50  E-value=1.1e-15  Score=136.04  Aligned_cols=117  Identities=13%  Similarity=0.206  Sum_probs=87.7

Q ss_pred             CCCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCcc-CCCCCCccCChhhHHhHhhhccCCc
Q 008103            2 ATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCV-HHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus         2 ~~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~-~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      +.|+|.|..++...  ...+..|.+.+.          ....++.+.|++  |. .-.+.+.|.....|..|+ .|++++
T Consensus         9 ~~k~~~~~~k~~~~--~~s~ee~~~~~~----------l~~~~~~~~c~~--~~~~~~~~~~~~~~~~l~~h~-~h~~~~   73 (129)
T 2wbt_A            9 GSKKYLSNHKGIFI--HVTLEELKRYHQ----------LTPEQKRLIRAI--VKTLIHNPQLLDESSYLYRLL-ASKAIS   73 (129)
T ss_dssp             TCCGGGGCSSCEEE--ECCHHHHHHHTT----------SCHHHHHHHHHH--HHHHHHCGGGTTTHHHHHHHH-HHHHHC
T ss_pred             cccccccccCCeee--eecHHhhhcccc----------CChhhCcccchh--hhcccCCCcccCCHHHHHHHH-HhCCCC
Confidence            67999887755332  223445544443          112456677877  50 000123445677788887 688999


Q ss_pred             ccccCcCCCcccchhhhhhhccccCCceeecC-CCCCcCChhHHHHHHHHhccch
Q 008103           81 KWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFITHRAFCDALA  134 (577)
Q Consensus        81 pykC~~C~K~F~sks~L~~H~r~hgeKpy~C~-Cgk~F~~~s~L~~H~r~h~~~~  134 (577)
                      ||+|++|++.|.....|..|+++| ++||.|+ |++.|.+++.|.+|+++|+.++
T Consensus        74 ~~~C~~C~k~f~~~~~l~~H~~~H-~~~~~C~~C~k~f~~~~~l~~H~~~h~~~~  127 (129)
T 2wbt_A           74 QFVCPLCLMPFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALDHVCKKHNIC  127 (129)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHHT-CCCCBCTTTCCBCSSHHHHHHHHHHTTCCC
T ss_pred             CeECCCCCcccCCHhHHHHHHHHC-CCCCCCCCCCcccCCHHHHHHHHHHHCCcc
Confidence            999999999999999999999999 9999999 9999999999999999998764

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.49  E-value=2e-15  Score=125.95  Aligned_cols=80  Identities=21%  Similarity=0.387  Sum_probs=76.3

Q ss_pred             CCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCccc
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKW   82 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpy   82 (577)
                      ++||+|++|++.|.....|..|+++|.             ++++|.|++  |     ++.|.....|.+|+++|++ ++|
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~--C-----~k~f~~~~~L~~H~~~h~~-~~~   59 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHT-------------GEKPFACDI--C-----GRKFARSDERKRHRDIQHI-LPI   59 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH-------------CCCCEECTT--T-----CCEESSHHHHHHHHHHHTH-HHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcC-------------CCCCccCCC--C-----CCccCCHHHHHHHHHHhCC-Ccc
Confidence            689999999999999999999999996             789999999  9     9999999999999999984 899


Q ss_pred             ccCcCCCcccchhhhhhhccc
Q 008103           83 KCEKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        83 kC~~C~K~F~sks~L~~H~r~  103 (577)
                      .|+.|++.|.....|..|++.
T Consensus        60 ~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C           60 LEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhhHHHHHH
Confidence            999999999999999999987

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.49  E-value=1.5e-14  Score=114.46  Aligned_cols=58  Identities=26%  Similarity=0.643  Sum_probs=45.4

Q ss_pred             CCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      ||||+|++|+|.|.....|..|+++|+             +++||.|++  |     ++.|.....|.+|+++|++|+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht-------------~ekp~~C~~--C-----~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHL-------------GYRPRSCPE--C-----GKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHH-------------TCCCEECTT--T-----CCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhC-------------CCcCeECCC--C-----CCCcCCHHHHHHHhCccCCCC
Confidence            678888888888888888888888775             777888887  7     788888888888888887764

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.43  E-value=6.7e-14  Score=114.30  Aligned_cols=78  Identities=26%  Similarity=0.599  Sum_probs=57.5

Q ss_pred             cccc--cccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCccc
Q 008103            5 RFIC--EVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKW   82 (577)
Q Consensus         5 py~C--~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpy   82 (577)
                      ||+|  ++|++.|..+..|+.|+++|.             ++++|+|++++|     ++.|.....|++|+++|++   |
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-----~~~f~~~~~l~~H~~~h~~---~   59 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHT-------------QQLPYECPHEGC-----DKRFSLPSRLKRHEKVHAG---Y   59 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHH-------------TTCCEECCSTTC-----CCEESSHHHHHHHHHHHHS---E
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhC-------------CCCCeeCCCCCC-----cCccCCHHHHHHHHHHhCC---C
Confidence            5777  777777777777777777774             567777765556     7777777777777777776   7


Q ss_pred             ccCc---CCCcccchhhhhhhccc
Q 008103           83 KCEK---CSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        83 kC~~---C~K~F~sks~L~~H~r~  103 (577)
                      +|++   |++.|.....|..|+++
T Consensus        60 ~C~~~~~C~~~f~~~~~l~~H~~~   83 (85)
T 2j7j_A           60 PCKKDDSCSFVGKTWTLYLKHVAE   83 (85)
T ss_dssp             ECCSCSSCCCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCCCccCCHHHHHHHHHh
Confidence            7777   77777777777777665

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=7.9e-14  Score=113.13  Aligned_cols=72  Identities=24%  Similarity=0.510  Sum_probs=67.5

Q ss_pred             ccCceeeCCCCCccCCCCCCccCChhhHHhHhh-hccCCcccccCc--CCCcccchhhhhhhccc-cCCceeecC-CCCC
Q 008103           42 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYS-RKHGEKKWKCEK--CSKRYAVQSDWKAHSKT-CGTREYRCD-CGTL  116 (577)
Q Consensus        42 ~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r-~HtgeKpykC~~--C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~  116 (577)
                      .++++|.|+++.|     ++.|..+..|++|++ +|+++++|+|++  |++.|..+..|+.|+++ ++++||.|+ |++.
T Consensus         3 ~~~~~~~C~~~~C-----~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~   77 (79)
T 2dlk_A            3 SGSSGMPCDFPGC-----GRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPS   77 (79)
T ss_dssp             SCCSSEECSSTTT-----CCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCC
T ss_pred             CCCCCccCCCCCC-----cCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCC
Confidence            3678999997778     999999999999999 799999999999  99999999999999999 899999999 9999


Q ss_pred             cC
Q 008103          117 FS  118 (577)
Q Consensus       117 F~  118 (577)
                      |.
T Consensus        78 F~   79 (79)
T 2dlk_A           78 SG   79 (79)
T ss_dssp             CC
T ss_pred             CC
Confidence            94

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=1.3e-13  Score=111.90  Aligned_cols=63  Identities=27%  Similarity=0.625  Sum_probs=37.6

Q ss_pred             ccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeec
Q 008103           42 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  111 (577)
Q Consensus        42 ~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C  111 (577)
                      .++++|.|++  |     ++.|.....|.+|+++|++++||+|++|++.|..+..|..|+++ ++++||.|
T Consensus        14 ~~~~~~~C~~--C-----~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           14 RERRRYKCDE--C-----GKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCSCSSBCSS--S-----CCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCEECCC--C-----CcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            3455566665  5     56666666666666666666666666666666666666666655 55566555

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.42  E-value=8.1e-14  Score=110.26  Aligned_cols=55  Identities=24%  Similarity=0.545  Sum_probs=47.4

Q ss_pred             CceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccccC
Q 008103           44 RKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCG  105 (577)
Q Consensus        44 ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~hg  105 (577)
                      ||||+|++  |     ++.|.....|.+|+++|+++|||+|++|+|.|.....|+.|+++|.
T Consensus         2 EKpy~C~~--C-----~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Ht   56 (60)
T 4gzn_C            2 ERPFFCNF--C-----GKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ   56 (60)
T ss_dssp             CCCEECTT--T-----CCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGS
T ss_pred             CCCccCCC--C-----CCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccC
Confidence            68888888  8     8888888888888888888888888888888888888888888843

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=1.8e-13  Score=119.50  Aligned_cols=71  Identities=18%  Similarity=0.345  Sum_probs=53.5

Q ss_pred             CCCCcccccccccccCChHHHHHHHH-hcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhH-hhhccC
Q 008103            1 MATNRFICEVCNKGFQREQNLQLHRR-GHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKH-YSRKHG   78 (577)
Q Consensus         1 t~~kpy~C~~CgK~F~~~s~L~~H~r-~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H-~r~Htg   78 (577)
                      ++++||+|++|++.|..+..|.+|++ +|..          ..+++||.|++  |     ++.|..+..|++| +++|++
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~----------~~~ekpf~C~~--C-----gk~F~~~~~L~~H~~r~Htg   76 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPN----------VVLNSSYVCVE--C-----NFLTKRYDALSEHNLKYHPG   76 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSS----------CCCSCCEEETT--T-----TEEESSTHHHHTHHHHTSTT
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCC----------CCCCCCcCCCC--C-----CcccCCHHHHHHHHHHhcCC
Confidence            46788888888888888888888876 4630          01567888888  7     8888888888888 778888


Q ss_pred             CcccccCcCC
Q 008103           79 EKKWKCEKCS   88 (577)
Q Consensus        79 eKpykC~~C~   88 (577)
                      +|||+|.++.
T Consensus        77 ekpy~C~~~~   86 (102)
T 2ghf_A           77 EENFKLTMVK   86 (102)
T ss_dssp             CCCEEEEECC
T ss_pred             CCCeeCCccc
Confidence            8888887754

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=3.1e-13  Score=110.95  Aligned_cols=75  Identities=19%  Similarity=0.455  Sum_probs=63.2

Q ss_pred             ccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCC----cccccCcCCCcccchhhhhhhccc-cCCceee
Q 008103           36 QKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE----KKWKCEKCSKRYAVQSDWKAHSKT-CGTREYR  110 (577)
Q Consensus        36 ~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htge----KpykC~~C~K~F~sks~L~~H~r~-hgeKpy~  110 (577)
                      .|+++|.++++|.|++  |     ++.|.....|++|+++|+.+    ++|+|++|++.|..+..|..|+++ ++++++.
T Consensus         5 ~H~~~H~~~k~~~C~~--C-----~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~   77 (86)
T 1x6h_A            5 SSGRTHTGEKPYACSH--C-----DKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVE   77 (86)
T ss_dssp             CCSTTCCCCCCEECSS--S-----SCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCC
T ss_pred             cccceecCCCCCcCCC--C-----CCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcc
Confidence            3445556889999998  8     89999999999998877765    789999999999999999999988 7888999


Q ss_pred             cC-CCCCc
Q 008103          111 CD-CGTLF  117 (577)
Q Consensus       111 C~-Cgk~F  117 (577)
                      |. |+..|
T Consensus        78 ~~~~~~~~   85 (86)
T 1x6h_A           78 GENSGPSS   85 (86)
T ss_dssp             CCCCCCCC
T ss_pred             cCCCCCCC
Confidence            98 88765

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=1.4e-13  Score=117.79  Aligned_cols=73  Identities=15%  Similarity=0.209  Sum_probs=65.4

Q ss_pred             CCccCChhhHHhHhhhccCCcccccCcCCCccc-chhhhhhhccc-cC-CceeecC-CCCCcCChhHHHHHHHHhcc
Q 008103           60 SRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYA-VQSDWKAHSKT-CG-TREYRCD-CGTLFSRRDSFITHRAFCDA  132 (577)
Q Consensus        60 ~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~-sks~L~~H~r~-hg-eKpy~C~-Cgk~F~~~s~L~~H~r~h~~  132 (577)
                      ...+.....+.+|+++|+++++|+|++|++.|. .+..|+.|+++ ++ +++|.|+ |++.|.++..|.+|+++|+.
T Consensus         3 s~s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~   79 (98)
T 2gqj_A            3 SGSSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS   79 (98)
T ss_dssp             CCCCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcC
Confidence            445666677889999999999999999999999 99999999999 67 8999999 99999999999999999865

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.37  E-value=4.3e-13  Score=109.46  Aligned_cols=78  Identities=27%  Similarity=0.626  Sum_probs=70.9

Q ss_pred             eeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCc--CCCcccchhhhhhhccc-cCCceeecC----CCCCcC
Q 008103           46 VYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEK--CSKRYAVQSDWKAHSKT-CGTREYRCD----CGTLFS  118 (577)
Q Consensus        46 py~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~--C~K~F~sks~L~~H~r~-hgeKpy~C~----Cgk~F~  118 (577)
                      ||.|++..|     ++.|.....|++|+++|++++||+|++  |++.|.....|..|+++ ++   |.|+    |++.|.
T Consensus         1 p~~C~~~~C-----~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~   72 (85)
T 2j7j_A            1 MYVCHFENC-----GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGK   72 (85)
T ss_dssp             CEECCSTTC-----CCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEES
T ss_pred             CccCCCCCC-----CcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccC
Confidence            689933239     999999999999999999999999998  99999999999999999 55   8884    999999


Q ss_pred             ChhHHHHHHHHhc
Q 008103          119 RRDSFITHRAFCD  131 (577)
Q Consensus       119 ~~s~L~~H~r~h~  131 (577)
                      +...|.+|+++|+
T Consensus        73 ~~~~l~~H~~~hh   85 (85)
T 2j7j_A           73 TWTLYLKHVAECH   85 (85)
T ss_dssp             SHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHhcC
Confidence            9999999999874

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.35  E-value=7.1e-13  Score=106.76  Aligned_cols=61  Identities=26%  Similarity=0.566  Sum_probs=34.6

Q ss_pred             CCCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcc
Q 008103            2 ATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKK   81 (577)
Q Consensus         2 ~~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKp   81 (577)
                      ++++|+|++|++.|.++..|..|+++|.             ++++|+|++  |     ++.|..+..|.+|+++|+++||
T Consensus        14 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~-------------~~~~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~kp   73 (74)
T 2lce_A           14 SDKPYKCDRCQASFRYKGNLASHKTVHT-------------GEKPYRCNI--C-----GAQFNRPANLKTHTRIHSGEKP   73 (74)
T ss_dssp             CCCSBCCTTSSCCBSCHHHHHHHHHHHC-------------CCCSEECTT--T-----CCEESCHHHHHHHHHHHCCSCC
T ss_pred             CCCCeECCCCCceeCCHHHHHHHHHHcC-------------CCCCEECCC--C-----CchhCCHHHHHHHHHhcCCCCC
Confidence            3455555555555555555555555554             455555555  5     5555555555555555555555


Q ss_pred             c
Q 008103           82 W   82 (577)
Q Consensus        82 y   82 (577)
                      |
T Consensus        74 ~   74 (74)
T 2lce_A           74 Y   74 (74)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=6e-13  Score=108.01  Aligned_cols=63  Identities=29%  Similarity=0.706  Sum_probs=57.3

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-CCCCcCChhHHHHHHHHhccch
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDALA  134 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~~~s~L~~H~r~h~~~~  134 (577)
                      +...+.++++|+|++|++.|.....|..|+++ +++++|.|+ |++.|.++..|.+|+++|....
T Consensus         9 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   73 (77)
T 2cot_A            9 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG   73 (77)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCC
T ss_pred             CcCcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            34567789999999999999999999999999 788999999 9999999999999999997643

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=9.6e-13  Score=107.98  Aligned_cols=75  Identities=17%  Similarity=0.430  Sum_probs=66.0

Q ss_pred             CCCCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103            1 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus         1 t~~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      ++++||+|++|++.|.....|.+|++.|+..         ...+++|.|++  |     ++.|..+..|.+|+++|++++
T Consensus        11 ~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~---------~~~~~~~~C~~--C-----~~~f~~~~~L~~H~~~h~~~~   74 (86)
T 1x6h_A           11 TGEKPYACSHCDKTFRQKQLLDMHFKRYHDP---------NFVPAAFVCSK--C-----GKTFTRRNTMARHADNCAGPD   74 (86)
T ss_dssp             CCCCCEECSSSSCEESSHHHHHHHHHHTTCS---------SCCCCCEECSS--S-----CCEESCHHHHHHHHHHCCCCC
T ss_pred             cCCCCCcCCCCCCccCCHHHHHHHHHHhcCC---------cCCCcceECCC--C-----CChhCCHHHHHHHHHHccCCC
Confidence            4689999999999999999999999987610         01237999999  9     999999999999999999999


Q ss_pred             ccccCcCCCcc
Q 008103           81 KWKCEKCSKRY   91 (577)
Q Consensus        81 pykC~~C~K~F   91 (577)
                      ++.|..|+..|
T Consensus        75 ~~~~~~~~~~~   85 (86)
T 1x6h_A           75 GVEGENSGPSS   85 (86)
T ss_dssp             SCCCCCCCCCC
T ss_pred             CcccCCCCCCC
Confidence            99999998765

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.33  E-value=3.2e-13  Score=109.61  Aligned_cols=64  Identities=20%  Similarity=0.415  Sum_probs=54.0

Q ss_pred             HHhHhhhccCCcccccCcCCCcccchhhhhhhccc-cC--CceeecC-CCCCcCChhHHHHHHHHhcc
Q 008103           69 IKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CG--TREYRCD-CGTLFSRRDSFITHRAFCDA  132 (577)
Q Consensus        69 Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hg--eKpy~C~-Cgk~F~~~s~L~~H~r~h~~  132 (577)
                      |.+|+++|+++|||+|++|++.|..+..|+.|++. |.  +++|.|+ |++.|.++..|.+|+++++.
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            55788889999999999999999999999999874 43  3789998 99999999999999988765

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=4.4e-13  Score=114.61  Aligned_cols=79  Identities=19%  Similarity=0.398  Sum_probs=70.1

Q ss_pred             ccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccC-ChhhHHhHhhhccC-CcccccCcCCCcc
Q 008103           14 GFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALG-DLTGIKKHYSRKHG-EKKWKCEKCSKRY   91 (577)
Q Consensus        14 ~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~-~~s~Lk~H~r~Htg-eKpykC~~C~K~F   91 (577)
                      .+.....+..|+++|.             ++++|.|++  |     ++.|. .+..|++|+++|++ +++|+|++|+|.|
T Consensus         5 s~~~~~~~~~h~~~h~-------------~~~~~~C~~--C-----~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F   64 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIH-------------ERGEAVCPT--C-----NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQF   64 (98)
T ss_dssp             CCCCCCSCSHHHHTTT-------------TTSCCCCTT--T-----CCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCC
T ss_pred             CCCCCCcHHHHHHHhc-------------cCCCcCCCC--C-----CCChhhhHHHHHHHHHHHcCCCCCEECCCCCCcc
Confidence            3455566677877775             889999999  9     99999 99999999999999 9999999999999


Q ss_pred             cchhhhhhhccc-cCCceeecC
Q 008103           92 AVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        92 ~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      ..+..|++|+++ +++||+..+
T Consensus        65 ~~~~~L~~H~~~h~~~kp~~~~   86 (98)
T 2gqj_A           65 KSKAGLNYHTMAEHSAKPSDAE   86 (98)
T ss_dssp             SCHHHHHHHHHHHSCSCSSCCC
T ss_pred             CCHHHHHHHHHHHcCCCCCCCC
Confidence            999999999999 899987654

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=1.1e-12  Score=112.65  Aligned_cols=72  Identities=15%  Similarity=0.271  Sum_probs=66.2

Q ss_pred             CCccCChhhHHhHhhhccCCcccccCcCCCcc-cchhhhhhhccccCCceeecC-CCCCcCChhHHHHH-HHHhc
Q 008103           60 SRALGDLTGIKKHYSRKHGEKKWKCEKCSKRY-AVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFITH-RAFCD  131 (577)
Q Consensus        60 ~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F-~sks~L~~H~r~hgeKpy~C~-Cgk~F~~~s~L~~H-~r~h~  131 (577)
                      ...|.....|..|+++|+++++|+|++|++.| ..+..|+.|+++|+++||.|+ |+|.|.++..|++| +++|.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~   87 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHN   87 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             CCCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCCHHHHHHHhHHhcC
Confidence            45677788899999999999999999999999 999999999999988999999 99999999999999 88883

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.30  E-value=1e-12  Score=105.40  Aligned_cols=61  Identities=28%  Similarity=0.633  Sum_probs=46.4

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-CCCCcCChhHHHHHHHHhcc
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDA  132 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~~~s~L~~H~r~h~~  132 (577)
                      +.++|++++||+|++|++.|.....|+.|+++ ++++||.|+ |++.|.++..|.+|+++|..
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~   67 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS   67 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHS
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            34567777778888888888777778778777 667778887 88888888888888877743

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.27  E-value=1.6e-12  Score=101.97  Aligned_cols=59  Identities=29%  Similarity=0.597  Sum_probs=44.4

Q ss_pred             hhccCCcccccCcCCCcccchhhhhhhccc-c--CCceeecC-CCCCcCChhHHHHHHHHhcc
Q 008103           74 SRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-C--GTREYRCD-CGTLFSRRDSFITHRAFCDA  132 (577)
Q Consensus        74 r~HtgeKpykC~~C~K~F~sks~L~~H~r~-h--geKpy~C~-Cgk~F~~~s~L~~H~r~h~~  132 (577)
                      ++|++++||+|++|++.|.....|..|+++ |  +++||.|+ |++.|.+++.|.+|++.|+.
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            567777777777777777777777777776 5  56777777 77888777788888777754

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.27  E-value=3.2e-12  Score=101.79  Aligned_cols=60  Identities=22%  Similarity=0.440  Sum_probs=32.7

Q ss_pred             CCCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcc
Q 008103            2 ATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKK   81 (577)
Q Consensus         2 ~~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKp   81 (577)
                      +++||+|++|++.|.++..|+.|+++|.             ++++|+|++  |     ++.|..+..|++|+++|++++|
T Consensus         6 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~--C-----~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            6 SGHPEKCSECSYSCSSKAALRIHERIHC-------------TDRPFKCNY--C-----SFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHGGGC-------------CSCSEECSS--S-----SCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCEeCCC--C-----CCccCCHHHHHHHHHHHhCCCC
Confidence            3455555555555555555555555553             445555555  5     5555555555555555555544

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.26  E-value=2.7e-12  Score=110.23  Aligned_cols=77  Identities=16%  Similarity=0.260  Sum_probs=70.2

Q ss_pred             ccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCcc-CChhhHHhHhhhccCCcccccCcCCCc
Q 008103           12 NKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRAL-GDLTGIKKHYSRKHGEKKWKCEKCSKR   90 (577)
Q Consensus        12 gK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F-~~~s~Lk~H~r~HtgeKpykC~~C~K~   90 (577)
                      ...|.....|..|++.|.             .+++|.|+.  |     ++.| ..+..|++|+++| +++||+|++|+|.
T Consensus        13 ~~~~~~~~~~~~~~~~~~-------------~~~~~~C~~--C-----~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~   71 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIV-------------DKGSVSCPT--C-----QAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQ   71 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHH-------------HTSCEECTT--T-----CSCEESSHHHHHHHHHHH-CCCCCCCSSSCCC
T ss_pred             CCCCCCchHHHHHHHHhc-------------CCCCcCCCC--C-----CCCcccCHHHHHHHHHHH-CCCCeECCCCCCe
Confidence            457888889999998885             789999999  9     9999 9999999999999 9999999999999


Q ss_pred             ccchhhhhhh-ccccCCcee
Q 008103           91 YAVQSDWKAH-SKTCGTREY  109 (577)
Q Consensus        91 F~sks~L~~H-~r~hgeKpy  109 (577)
                      |..+..|+.| +++|.++||
T Consensus        72 F~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           72 LRSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             CSSHHHHHHHHHHHTCCCSS
T ss_pred             eCCHHHHHHHhHHhcCCCCC
Confidence            9999999999 777777776

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.23  E-value=4.8e-12  Score=101.86  Aligned_cols=62  Identities=23%  Similarity=0.581  Sum_probs=50.2

Q ss_pred             cccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCcee
Q 008103           41 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREY  109 (577)
Q Consensus        41 ~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy  109 (577)
                      +.++++|+|+.  |     ++.|..+..|++|+++|+++++|+|++|++.|..+..|.+|+++ +++|||
T Consensus        12 ~~~~~~~~C~~--C-----~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           12 THSDKPYKCDR--C-----QASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCSBCCTT--S-----SCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cCCCCCeECCC--C-----CceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            34677888888  7     88888888888888888888888888888888888888888887 677775

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.23  E-value=4.3e-12  Score=110.80  Aligned_cols=67  Identities=16%  Similarity=0.229  Sum_probs=61.1

Q ss_pred             ccCceeeCCCCCccCCCCCCccCChhhHHhHhh-hc---cCCcccccCcCCCcccchhhhhhh-ccc-cCCceeecC-CC
Q 008103           42 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYS-RK---HGEKKWKCEKCSKRYAVQSDWKAH-SKT-CGTREYRCD-CG  114 (577)
Q Consensus        42 ~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r-~H---tgeKpykC~~C~K~F~sks~L~~H-~r~-hgeKpy~C~-Cg  114 (577)
                      .+++||.|+.  |     ++.|..+..|++|++ +|   ++++||+|++|+|.|..+..|..| +++ +++|||.|. +.
T Consensus        14 ~gekpy~C~~--C-----gk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           14 KVEGGYECKY--C-----TFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCSSEECSS--C-----SCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCcCcCCCC--C-----CCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            5789999999  9     999999999999998 58   668999999999999999999999 788 789999998 54


Q ss_pred             C
Q 008103          115 T  115 (577)
Q Consensus       115 k  115 (577)
                      +
T Consensus        87 ~   87 (102)
T 2ghf_A           87 R   87 (102)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.21  E-value=7.1e-12  Score=99.75  Aligned_cols=61  Identities=21%  Similarity=0.349  Sum_probs=41.4

Q ss_pred             cccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCce
Q 008103           41 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTRE  108 (577)
Q Consensus        41 ~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKp  108 (577)
                      +.++++|.|++  |     ++.|..+..|++|+++|+++++|+|++|++.|..+..|..|+++ ++++|
T Consensus         4 ~~~~~~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            4 GSSGHPEKCSE--C-----SYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             CCCCCSEECSS--S-----SCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCeECCC--C-----CcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            34566677766  6     67777777777777777666777777777777776667666666 55555

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.21  E-value=9.8e-12  Score=99.64  Aligned_cols=58  Identities=28%  Similarity=0.518  Sum_probs=44.1

Q ss_pred             cccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc
Q 008103           39 TKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        39 ~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~  103 (577)
                      ++|.++++|.|++  |     ++.|.....|++|+++|++++||+|++|++.|..+..|++|+++
T Consensus         7 ~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~   64 (72)
T 1x6e_A            7 GIHSGEKPYGCVE--C-----GKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI   64 (72)
T ss_dssp             CTTTTCCCEECSS--S-----CCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             cccCCCCCccCCC--C-----CCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHh
Confidence            3455777777777  7     77777777777777777777777777777777777777777777

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.21  E-value=2.2e-12  Score=114.57  Aligned_cols=81  Identities=16%  Similarity=0.293  Sum_probs=70.4

Q ss_pred             CCcccccccccccC------ChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhc
Q 008103            3 TNRFICEVCNKGFQ------REQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRK   76 (577)
Q Consensus         3 ~kpy~C~~CgK~F~------~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~H   76 (577)
                      +++|.|++|.+.|.      ....|..|+ .|+             +++||.|++  |     ++.|.....|++|+++|
T Consensus        39 ~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~-------------~~~~~~C~~--C-----~k~f~~~~~l~~H~~~H   97 (129)
T 2wbt_A           39 QKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASK-------------AISQFVCPL--C-----LMPFSSSVSLKQHIRYT   97 (129)
T ss_dssp             HHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHH-------------HHCSEECTT--T-----CCEESSHHHHHHHHHHT
T ss_pred             hCcccchhhhcccCCCcccCCHHHHHHHH-HhC-------------CCCCeECCC--C-----CcccCCHhHHHHHHHHC
Confidence            35678999887766      666777776 454             789999999  9     99999999999999999


Q ss_pred             cCCcccccCcCCCcccchhhhhhhccc-cCC
Q 008103           77 HGEKKWKCEKCSKRYAVQSDWKAHSKT-CGT  106 (577)
Q Consensus        77 tgeKpykC~~C~K~F~sks~L~~H~r~-hge  106 (577)
                        ++||+|++|++.|..+..|.+|+++ |++
T Consensus        98 --~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           98 --EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             --CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             --CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence              8999999999999999999999998 554

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.20  E-value=8.6e-12  Score=94.82  Aligned_cols=52  Identities=21%  Similarity=0.463  Sum_probs=25.3

Q ss_pred             CcccccCcCCCcccchhhhhhhccc-cCCceeecC-CCCCcCChhHHHHHHHHh
Q 008103           79 EKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFC  130 (577)
Q Consensus        79 eKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~~~s~L~~H~r~h  130 (577)
                      ++||+|++|++.|.....|..|+++ ++++||.|+ |++.|.++..|.+|+++|
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   55 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH   55 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHh
Confidence            3445555555555555555555554 444555555 555555555555555544

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.17  E-value=1.5e-11  Score=93.44  Aligned_cols=56  Identities=30%  Similarity=0.551  Sum_probs=35.6

Q ss_pred             CCCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhcc
Q 008103            2 ATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKH   77 (577)
Q Consensus         2 ~~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Ht   77 (577)
                      +++||+|++|++.|.+...|..|+++|+             ++++|.|++  |     ++.|..+..|.+|+++|+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~--C-----~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHT-------------GEKPYKCEF--C-----EYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHH-------------CCCCEECSS--S-----SCEESSHHHHHHHHHHHC
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcC-------------CCCCcCCCC--C-----cchhCCHHHHHHHHHHhc
Confidence            3566777777777777777777766664             566677766  6     667777777777766665

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1.2e-11  Score=100.27  Aligned_cols=57  Identities=23%  Similarity=0.538  Sum_probs=40.9

Q ss_pred             ccCCcccccCcCCCcccchhhhhhhccc-cC---CceeecC-CCCCcCChhHHHHHHHHhcc
Q 008103           76 KHGEKKWKCEKCSKRYAVQSDWKAHSKT-CG---TREYRCD-CGTLFSRRDSFITHRAFCDA  132 (577)
Q Consensus        76 HtgeKpykC~~C~K~F~sks~L~~H~r~-hg---eKpy~C~-Cgk~F~~~s~L~~H~r~h~~  132 (577)
                      |+++|||+|++|++.|..+..|..|+++ ++   +++|.|+ |++.|.++..|.+|++.++.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   63 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP   63 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTST
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCC
Confidence            6677777777777777777777777776 43   6777777 77777777777777755543

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.15  E-value=4e-11  Score=91.08  Aligned_cols=56  Identities=27%  Similarity=0.546  Sum_probs=44.9

Q ss_pred             cccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103            5 RFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus         5 py~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      ||+|++|++.|.+...|..|+++|.             ++++|.|++  |     ++.|.....|.+|+++|+++|
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~--C-----~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHT-------------DVRPYHCTY--C-----NFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS-------------SCCCEECSS--S-----SCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcC-------------CCCCccCCC--C-----CchhcCHHHHHHHHHHhcccC
Confidence            6788888888888888888888875             677888888  7     788888888888888887765

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.13  E-value=3.4e-11  Score=101.70  Aligned_cols=57  Identities=16%  Similarity=0.427  Sum_probs=38.0

Q ss_pred             ccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc
Q 008103           40 KEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        40 ~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~  103 (577)
                      .+...++|.|++  |     ++.|..+..|++|+++|+++|||+|++|+|.|.++..|++|++.
T Consensus        22 ~~~~~~~h~C~~--C-----gk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~   78 (85)
T 2lv2_A           22 LSASAECHLCPV--C-----GESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK   78 (85)
T ss_dssp             SCCCCTTEECTT--S-----CCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHT
T ss_pred             CCCCCCCEECCC--C-----CCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcc
Confidence            334556667766  6     67777777777777777777777777777777777667666543

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.13  E-value=4.1e-11  Score=101.21  Aligned_cols=59  Identities=20%  Similarity=0.463  Sum_probs=54.4

Q ss_pred             CCCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHh-hhccCCc
Q 008103            2 ATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHY-SRKHGEK   80 (577)
Q Consensus         2 ~~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~-r~HtgeK   80 (577)
                      .+++|+|++|+|.|.++..|.+|+++|+             +++||.|++  |     ++.|..+..|++|+ ++|++|+
T Consensus        25 ~~~~h~C~~Cgk~F~~~~~L~~H~~~H~-------------~~k~~~C~~--C-----~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           25 SAECHLCPVCGESFASKGAQERHLRLLH-------------AAQVFPCKY--C-----PATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CCTTEECTTSCCEESSHHHHHHHHHTTS-------------CSSSEECTT--S-----SCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCEECCCCCCCcCcHHHHhhhhhhcc-------------CCCccCCCC--C-----CCEeCCHHHHHHhCcccCcCCC
Confidence            4688999999999999999999999997             889999999  9     99999999999997 5788774

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=4.3e-11  Score=97.00  Aligned_cols=66  Identities=17%  Similarity=0.332  Sum_probs=40.1

Q ss_pred             CCCCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHh-hhccCC
Q 008103            1 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHY-SRKHGE   79 (577)
Q Consensus         1 t~~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~-r~Htge   79 (577)
                      ++++||+|++|++.|.++..|..|+++|..          ...+++|.|++  |     ++.|..+..|.+|+ +.|.++
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~----------~~~~~~~~C~~--C-----~k~f~~~~~L~~H~~~~H~~~   65 (78)
T 2d9h_A            3 SGSSGLQCEICGFTCRQKASLNWHQRKHAE----------TVAALRFPCEF--C-----GKRFEKPDSVAAHRSKSHPAL   65 (78)
T ss_dssp             CSCCCEECSSSCCEESSHHHHHHHHHHHHH----------HTTTCCEECTT--T-----CCEESSHHHHHHHHHHTSTTT
T ss_pred             CCCcCeECCCCCCeeCCHHHHHHHHHHhhc----------cCCCcccCCCC--C-----CchhCCHHHHHHHHHHhCCCC
Confidence            356667777777777776677777666640          00256666666  6     66666666666666 345555


Q ss_pred             cccc
Q 008103           80 KKWK   83 (577)
Q Consensus        80 Kpyk   83 (577)
                      ++..
T Consensus        66 ~~~~   69 (78)
T 2d9h_A           66 LLAP   69 (78)
T ss_dssp             SSCC
T ss_pred             CCCc
Confidence            5444

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.11  E-value=4.7e-11  Score=96.70  Aligned_cols=65  Identities=20%  Similarity=0.340  Sum_probs=57.7

Q ss_pred             cccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhh-hccCC-cccccCcCCCcccchhhhhhhccc-cCC
Q 008103           35 KQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYS-RKHGE-KKWKCEKCSKRYAVQSDWKAHSKT-CGT  106 (577)
Q Consensus        35 ~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r-~Htge-KpykC~~C~K~F~sks~L~~H~r~-hge  106 (577)
                      ..|+++|.++++|.|++  |     ++.|..+..|++|++ .|.++ ++|+|++|++.|..+..|..|+++ |..
T Consensus         4 ~~H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A            4 GSSGRTHSGEKPYECYI--C-----HARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             CCCCCCCSCCCSEECTT--T-----CCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             CccccccCCCCCeECCC--c-----CchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            44666777999999999  9     999999999999997 67765 899999999999999999999998 543

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=9.3e-11  Score=98.15  Aligned_cols=61  Identities=18%  Similarity=0.219  Sum_probs=42.5

Q ss_pred             cccccccccccCChHHHHHHHHh-cCCCccccccccccccCce--------eeCCCCCccCCCCCCccCChhhHHhHhhh
Q 008103            5 RFICEVCNKGFQREQNLQLHRRG-HNLPWKLKQKTTKEVKRKV--------YLCPEPTCVHHDPSRALGDLTGIKKHYSR   75 (577)
Q Consensus         5 py~C~~CgK~F~~~s~L~~H~r~-H~~p~~~~~h~~~~~~ekp--------y~C~~~~C~~~~~~k~F~~~s~Lk~H~r~   75 (577)
                      .|+|++|++.|.++..|.+|+++ |.             ++++        |.|++  |     ++.|..+..|++|+++
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~-------------~~~~~~~~~c~~~~C~~--C-----~k~f~~~~~L~~H~~~   84 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHV-------------GGPEQNNHVCYWEECPR--E-----GKSFKAKYKLVNHIRV   84 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTT-------------CCTTCSCCCCCCTTCSS--T-----TCCCSSHHHHHHHHHH
T ss_pred             CCcccccccccCCHHHHHHHHHHhcc-------------CCCCCCccceeccCCCC--C-----CcccCCHHHHHHHHHh
Confidence            35677777777777777777776 54             3333        66666  6     7777777777777777


Q ss_pred             ccCCcccccC
Q 008103           76 KHGEKKWKCE   85 (577)
Q Consensus        76 HtgeKpykC~   85 (577)
                      |+++|||+|+
T Consensus        85 H~~~k~~~C~   94 (95)
T 2ej4_A           85 HTGEKSGPSS   94 (95)
T ss_dssp             HHTCCCCSSC
T ss_pred             cCCCCCCCCC
Confidence            7777777775

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=7.3e-13  Score=105.17  Aligned_cols=68  Identities=13%  Similarity=0.235  Sum_probs=57.5

Q ss_pred             ccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceee
Q 008103           32 WKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYR  110 (577)
Q Consensus        32 ~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~  110 (577)
                      ..+..|++.|.++++|.|++  |     ++.|.....|.+       +++|+|++|++.|.....|..|+++ ++++||.
T Consensus         4 ~~l~~H~~~h~~~~~~~C~~--C-----~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~   69 (73)
T 2ctu_A            4 GSSGKRQKIHLGDRSQKCSK--C-----GIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSG   69 (73)
T ss_dssp             CSCCCCCCCCCCCSEEECSS--S-----CCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSS
T ss_pred             hhHHHHHHHhCCCCCeeCCc--c-----cchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCC
Confidence            34667888888889999988  8     888888887776       7889999999999999999999888 7888898


Q ss_pred             cC-C
Q 008103          111 CD-C  113 (577)
Q Consensus       111 C~-C  113 (577)
                      |+ |
T Consensus        70 C~~C   73 (73)
T 2ctu_A           70 PSSG   73 (73)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            87 7

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.07  E-value=6.8e-11  Score=92.62  Aligned_cols=60  Identities=23%  Similarity=0.484  Sum_probs=55.1

Q ss_pred             cccccCceeeCCCCCccCCCCCCccCChhhHHhHhhh-c-cCCcccccCcCCCcccchhhhhhhccc-cC
Q 008103           39 TKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSR-K-HGEKKWKCEKCSKRYAVQSDWKAHSKT-CG  105 (577)
Q Consensus        39 ~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~-H-tgeKpykC~~C~K~F~sks~L~~H~r~-hg  105 (577)
                      +.|.++++|.|+.  |     ++.|..+..|.+|+++ | .+++||+|++|++.|..+..|..|+++ |+
T Consensus         3 ~~h~~~k~~~C~~--C-----~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKV--C-----SRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTT--T-----CCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCC--C-----cchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            3566899999999  9     9999999999999998 7 589999999999999999999999988 64

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.06  E-value=1.6e-10  Score=88.70  Aligned_cols=56  Identities=34%  Similarity=0.718  Sum_probs=39.3

Q ss_pred             CcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHh-hhccCC
Q 008103            4 NRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHY-SRKHGE   79 (577)
Q Consensus         4 kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~-r~Htge   79 (577)
                      |||+|++|++.|.+...|..|+++|+             ++++|.|++  |     ++.|..+..|.+|+ ++|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~--C-----~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT-------------NEKPYPCGL--C-----NRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTT-------------SSCSEECTT--T-----CCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhC-------------CCCCccCCC--C-----CCccCCHHHHHHHHHHHcCCc
Confidence            46777777777777777777777765             566777777  6     77777777777775 556543

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.03  E-value=1.5e-10  Score=87.84  Aligned_cols=55  Identities=20%  Similarity=0.516  Sum_probs=42.1

Q ss_pred             eeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCc
Q 008103           46 VYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTR  107 (577)
Q Consensus        46 py~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeK  107 (577)
                      ||.|++  |     ++.|.....|.+|+++|++++||+|++|++.|.....|..|+++ +++|
T Consensus         1 p~~C~~--C-----~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEE--C-----GIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTT--T-----CCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCC--C-----cCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            577777  7     78888888888888888888888888888888888888888777 4443

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=2e-11  Score=96.81  Aligned_cols=67  Identities=13%  Similarity=0.225  Sum_probs=59.3

Q ss_pred             hhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccccCCceeecC-CCCCcCChhHHHHHHHHhccchhhhc
Q 008103           66 LTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFITHRAFCDALAQESA  138 (577)
Q Consensus        66 ~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~hgeKpy~C~-Cgk~F~~~s~L~~H~r~h~~~~~~s~  138 (577)
                      +..|.+|+++|++++||+|++|++.|.....|..      +++|.|+ |++.|.++..|.+|+++|.....+.+
T Consensus         3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C   70 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGP   70 (73)
T ss_dssp             CCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSC
T ss_pred             chhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCC
Confidence            4568899999999999999999999999998876      8999999 99999999999999999876544443

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.00  E-value=1.9e-10  Score=91.83  Aligned_cols=57  Identities=23%  Similarity=0.602  Sum_probs=31.8

Q ss_pred             ccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc
Q 008103           42 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        42 ~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~  103 (577)
                      .++++|.|++..|     ++.|..+..|.+|+++|+++++|+|++|++.|..+..|.+|+++
T Consensus        15 ~~~~~~~C~~~~C-----~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           15 PKMRPYACPVESC-----DRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             CCCCCEECSSTTB-----CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTT
T ss_pred             CCCCccCCcCCCC-----CCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHh
Confidence            3555555542225     55555555555555555555555555555555555555555544

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.98  E-value=3.4e-10  Score=86.88  Aligned_cols=51  Identities=24%  Similarity=0.650  Sum_probs=39.2

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhcc
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSK  102 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r  102 (577)
                      +||.|++  |     ++.|.....|.+|+++|++++||+|++|++.|..+..|..|++
T Consensus         1 k~~~C~~--C-----~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   51 (60)
T 2adr_A            1 RSFVCEV--C-----TRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ   51 (60)
T ss_dssp             CCBCCTT--T-----CCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHT
T ss_pred             CcCcCCC--C-----ccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHH
Confidence            4677777  7     7778877888888877777777778777777777777777754

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=4.7e-10  Score=88.44  Aligned_cols=52  Identities=17%  Similarity=0.376  Sum_probs=31.9

Q ss_pred             cCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC-cCCCcccchhhhhhhccc
Q 008103           43 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE-KCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        43 ~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~-~C~K~F~sks~L~~H~r~  103 (577)
                      ++++|.|+.  |     ++.|. ...|++|+++ ++++||+|+ +|++.|..+..|..|+++
T Consensus         7 ~~~~~~C~~--C-----~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~   59 (66)
T 2eod_A            7 GKRTQPCTY--C-----TKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKD   59 (66)
T ss_dssp             CCCEEECSS--S-----CCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHT
T ss_pred             CCCCeeccc--c-----CCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHh
Confidence            455666666  5     66666 6666666665 566666666 666666666666666655

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.93  E-value=6.1e-10  Score=88.85  Aligned_cols=57  Identities=23%  Similarity=0.505  Sum_probs=52.8

Q ss_pred             CCCCccccc--ccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhcc
Q 008103            1 MATNRFICE--VCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKH   77 (577)
Q Consensus         1 t~~kpy~C~--~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Ht   77 (577)
                      +++++|+|+  .|++.|..+..|..|+++|.             ++++|.|++  |     ++.|..+..|.+|+++|+
T Consensus        15 ~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~-------------~~~~~~C~~--C-----~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           15 PKMRPYACPVESCDRRFSRSDELTRHIRIHT-------------GQKPFQCRI--C-----MRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCEECSSTTBCCEESSHHHHHHHHHHHH-------------CCCCEECTT--T-----CCEESCHHHHHHHHTTCC
T ss_pred             CCCCccCCcCCCCCCccCCHHHHHHHHHhhC-------------CCCCeECCC--C-----CchhCCHHHHHHHHHhcC
Confidence            368999997  59999999999999999996             789999999  9     999999999999999985

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=6.5e-10  Score=92.93  Aligned_cols=61  Identities=13%  Similarity=0.256  Sum_probs=54.1

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhh-ccCCcc--------cccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSR-KHGEKK--------WKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~-HtgeKp--------ykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      ..|.|+.  |     ++.|.....|.+|+++ |.++++        |+|++|++.|..+..|+.|+++ +++|||.|+
T Consensus        24 ~~~~C~~--C-----~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           24 LSRPKKS--C-----DRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSSCCC--C-----CCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCCcccc--c-----ccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            4466777  7     9999999999999998 888887        8999999999999999999999 789999985

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.90  E-value=4.1e-10  Score=82.04  Aligned_cols=44  Identities=18%  Similarity=0.332  Sum_probs=26.3

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRE--C-----DMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSS--S-----CCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCC--C-----CcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            445555566666665  5     5666666666666666666666666555

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=4.3e-10  Score=81.92  Aligned_cols=44  Identities=20%  Similarity=0.361  Sum_probs=25.9

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNE--C-----GKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTT--T-----CCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCC--C-----CCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            445555556666665  5     5666666666666666666666666555

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.90  E-value=1e-09  Score=87.43  Aligned_cols=58  Identities=24%  Similarity=0.582  Sum_probs=46.9

Q ss_pred             cccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCc--CCCcccchhhhhhhccc
Q 008103           41 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEK--CSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        41 ~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~--C~K~F~sks~L~~H~r~  103 (577)
                      ....++|.|++++|     ++.|.....|++|+++|++++||+|++  |++.|..+..|.+|+++
T Consensus        12 ~~~~~~~~C~~~~C-----~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           12 SSRIRSHICSHPGC-----GKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCCCCCEECSSTTT-----CCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             ccccCceeCCCCCC-----ccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence            44667888877667     888888888888888888888888864  88888888888888765

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.89  E-value=4e-10  Score=82.10  Aligned_cols=44  Identities=20%  Similarity=0.341  Sum_probs=27.3

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNE--C-----GKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSS--S-----CCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CccCCCCCcCcCCCC--C-----cchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            455556666666666  5     6666666666666666666666666655

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.88  E-value=4.5e-10  Score=81.71  Aligned_cols=44  Identities=16%  Similarity=0.222  Sum_probs=26.3

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQ--C-----AKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSS--S-----SCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cccCCCCCCceECCC--C-----CchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            455555566666665  5     5666666666666666666666666555

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.88  E-value=4.2e-10  Score=82.12  Aligned_cols=44  Identities=25%  Similarity=0.367  Sum_probs=27.8

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEKPYECKE--C-----GKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCSCBCSS--S-----CCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCccCCCCceECCC--C-----CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            455566666666666  6     6666666666666666666666666655

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=4e-10  Score=81.96  Aligned_cols=44  Identities=23%  Similarity=0.357  Sum_probs=26.6

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKE--C-----GKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTT--T-----TBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CcccCCCCCCeECCC--C-----CCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            455555566666665  5     6666666666666666666666666555

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=4.2e-10  Score=81.97  Aligned_cols=44  Identities=18%  Similarity=0.289  Sum_probs=28.5

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSV--C-----GKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSS--S-----CCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccCCcCCCCCeeCCC--c-----CCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            555666666666666  6     6666666666666666666666666665

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=4.7e-10  Score=81.59  Aligned_cols=44  Identities=16%  Similarity=0.176  Sum_probs=26.4

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|++|
T Consensus         3 H~~~H~~~~~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRE--C-----GKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTT--T-----CCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CccccCCCCCeeCCC--C-----CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            445555566666665  5     6666666666666666666666666555

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=5.5e-10  Score=81.48  Aligned_cols=44  Identities=20%  Similarity=0.302  Sum_probs=27.3

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTE--C-----GKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSS--S-----CCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCC--C-----CchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            455555666666666  5     6666666666666666666666666655

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.88  E-value=1.6e-09  Score=86.33  Aligned_cols=57  Identities=23%  Similarity=0.517  Sum_probs=52.0

Q ss_pred             CCCcccccc--cccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhc
Q 008103            2 ATNRFICEV--CNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRK   76 (577)
Q Consensus         2 ~~kpy~C~~--CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~H   76 (577)
                      ..++|+|++  |++.|.....|+.|+++|+             ++++|.|+++.|     ++.|..+..|++|+++|
T Consensus        14 ~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~~~C-----~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHT-------------GEKPFSCSWKGC-----ERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCEECSSTTTCCEESSHHHHHHHHHHHS-------------SSCSEECCCTTC-----CCEESSHHHHHHHTTTC
T ss_pred             ccCceeCCCCCCccccCCHHHHHHHHHhcC-------------CCCCccCCCCCC-----CcccCCHHHHHhHhhcC
Confidence            568999998  9999999999999999996             889999975448     99999999999999886

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5.5e-10  Score=81.21  Aligned_cols=44  Identities=23%  Similarity=0.384  Sum_probs=25.0

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNE--C-----GKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTT--T-----CCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCC--C-----CCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            445555555555555  5     5555555555555555555555555554

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5.2e-10  Score=81.33  Aligned_cols=44  Identities=16%  Similarity=0.311  Sum_probs=25.9

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 H~~~H~~~~~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKPYKCSD--C-----GKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSCBCSS--S-----CCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCccCCc--c-----ChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            445555556666655  5     5666666666666666666666666555

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=7.3e-10  Score=80.80  Aligned_cols=44  Identities=18%  Similarity=0.289  Sum_probs=27.8

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 h~~~h~~~k~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCED--C-----GKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSS--S-----CCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcc--c-----CchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            455566666666666  6     6666666666666666666666666655

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=6.2e-10  Score=81.07  Aligned_cols=44  Identities=23%  Similarity=0.395  Sum_probs=28.2

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCID--C-----GKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTT--T-----CCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCC--C-----CceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            455566666666666  6     6666666666666666666666666665

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=3.2e-10  Score=82.77  Aligned_cols=45  Identities=20%  Similarity=0.353  Sum_probs=29.2

Q ss_pred             ccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           36 QKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        36 ~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      .|++.|.++++|.|++  |     ++.|.....|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNE--C-----GKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSS--S-----CCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccc--c-----CcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            3555666666666666  6     6666666666666666666666666665

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=4.7e-10  Score=81.59  Aligned_cols=45  Identities=22%  Similarity=0.343  Sum_probs=28.1

Q ss_pred             ccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           36 QKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        36 ~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      .|++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDY--C-----GKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSS--S-----CCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCC--C-----ChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            3555566666666666  6     6666666666666666666666666655

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=5.2e-10  Score=81.49  Aligned_cols=44  Identities=20%  Similarity=0.321  Sum_probs=28.3

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNE--C-----GKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSS--S-----CCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCC--C-----CchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            455566666666666  6     6666666666666666666666666665

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=4.6e-10  Score=81.65  Aligned_cols=44  Identities=18%  Similarity=0.284  Sum_probs=26.2

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|+|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 H~~~H~~~~~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNE--C-----GKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETT--T-----TEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCC--c-----ChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            445555566666665  5     5666666666666666666666666555

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=4.8e-10  Score=81.53  Aligned_cols=44  Identities=18%  Similarity=0.257  Sum_probs=27.9

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 H~~~H~~~~~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDE--C-----GKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTT--T-----CCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccccCCCCCCeECCC--c-----CcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            455566666666666  6     6666666666666666666666666655

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=5e-10  Score=81.55  Aligned_cols=44  Identities=20%  Similarity=0.316  Sum_probs=29.1

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHE--C-----GKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTT--T-----CCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCC--C-----CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            455666666666666  6     6666666666666666666666666665

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=4.7e-10  Score=81.70  Aligned_cols=44  Identities=20%  Similarity=0.299  Sum_probs=29.4

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHE--C-----GKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSS--S-----CCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCC--C-----CcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            555666666666666  6     6666666666666666666666666665

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=4.3e-10  Score=81.90  Aligned_cols=45  Identities=20%  Similarity=0.303  Sum_probs=28.6

Q ss_pred             ccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           36 QKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        36 ~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      .|++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAE--C-----GKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSS--S-----CCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCC--C-----ChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3555666666666666  6     6666666666666666666666666655

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=5.6e-10  Score=81.32  Aligned_cols=44  Identities=14%  Similarity=0.233  Sum_probs=28.2

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|++|
T Consensus         3 H~~~H~~~~~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDI--C-----GKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSCCCSS--S-----CCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCcCCCc--C-----CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            555566666666666  6     6666666666666666666666666665

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=5.5e-10  Score=81.33  Aligned_cols=44  Identities=18%  Similarity=0.311  Sum_probs=26.8

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 H~~~H~~~~~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGE--C-----GKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTT--T-----CCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCeECCC--C-----CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            455555666666666  5     6666666666666666666666666655

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.86  E-value=6.3e-10  Score=81.17  Aligned_cols=44  Identities=18%  Similarity=0.314  Sum_probs=27.9

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |+++|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVE--C-----GKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSS--S-----CCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCc--c-----CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            455566666666666  6     6666666666666666666666666655

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.86  E-value=6.3e-10  Score=80.88  Aligned_cols=44  Identities=23%  Similarity=0.302  Sum_probs=28.5

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKE--C-----GKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSS--S-----CCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCc--c-----ccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            555666666666666  6     6666666666666666666666666665

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=7.2e-10  Score=80.85  Aligned_cols=44  Identities=23%  Similarity=0.326  Sum_probs=28.2

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSE--C-----GKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSS--S-----CCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCc--c-----ChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            455566666666666  6     6666666666666666666666666665

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=4.4e-10  Score=81.71  Aligned_cols=45  Identities=16%  Similarity=0.217  Sum_probs=31.2

Q ss_pred             ccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           36 QKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        36 ~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      .|++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNE--C-----GKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSS--S-----CCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCC--C-----ChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3556666677777776  6     7777777777777777777777777666

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=4.6e-10  Score=81.91  Aligned_cols=45  Identities=20%  Similarity=0.253  Sum_probs=29.3

Q ss_pred             ccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           36 QKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        36 ~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      .|++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHE--C-----GRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSS--S-----CCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCc--C-----CCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3555666666666666  6     6666666666666666666666666665

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=4.7e-10  Score=81.70  Aligned_cols=44  Identities=18%  Similarity=0.289  Sum_probs=28.4

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGEKPYECSI--C-----GKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCCCSEECSS--S-----CCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCcCcCCCC--C-----CcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            555566666666666  6     6666666666666666666666666655

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=4.3e-10  Score=81.90  Aligned_cols=44  Identities=18%  Similarity=0.309  Sum_probs=27.3

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNE--C-----GKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSS--S-----CCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCc--C-----CchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            455555666666666  5     6666666666666666666666666655

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=4.6e-10  Score=81.75  Aligned_cols=44  Identities=23%  Similarity=0.373  Sum_probs=29.2

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNE--C-----GKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSS--S-----CCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cccccCCCcCeECCC--C-----CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            555666666666666  6     6666666666666666666666666665

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=7e-10  Score=80.78  Aligned_cols=44  Identities=20%  Similarity=0.252  Sum_probs=29.7

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEE--C-----GKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSS--S-----CCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCC--c-----cchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            455666666677766  6     6677766677777666666666766665

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=5.2e-10  Score=81.49  Aligned_cols=44  Identities=18%  Similarity=0.304  Sum_probs=22.7

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|++|
T Consensus         3 H~~~H~~~~~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGSSGSGEKPFKCEE--C-----GKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCCCCCSEEETT--T-----TEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cccCCCCCCCeeCCC--C-----CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            444445555555555  4     5555555555555555555555555544

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=5.4e-10  Score=81.40  Aligned_cols=44  Identities=20%  Similarity=0.366  Sum_probs=30.0

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|++|
T Consensus         3 H~~~H~~~~~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNE--C-----GKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSS--S-----CCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCc--C-----CCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            556666666777766  6     6777777777777777766677777665

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=6.1e-10  Score=80.34  Aligned_cols=44  Identities=16%  Similarity=0.189  Sum_probs=30.4

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         1 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSC--C-----EKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSS--S-----SCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCC--C-----CcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            345666677777776  6     7777777777777777777777777666

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=4.8e-10  Score=81.65  Aligned_cols=44  Identities=23%  Similarity=0.398  Sum_probs=30.5

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTV--C-----GKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTT--T-----CCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCC--C-----CchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            556666667777776  6     6777777777777777777777777665

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=6e-10  Score=81.15  Aligned_cols=44  Identities=20%  Similarity=0.310  Sum_probs=29.4

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSE--C-----GKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSS--S-----CCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCC--C-----CCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            555666666666666  6     6666666666666666666666666665

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=6.8e-10  Score=80.85  Aligned_cols=44  Identities=25%  Similarity=0.375  Sum_probs=25.5

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAE--C-----GKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCCCSEECSS--S-----CCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCeECCC--C-----CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            445555555666655  5     5666666666666666655556655543

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=6e-10  Score=81.03  Aligned_cols=44  Identities=16%  Similarity=0.172  Sum_probs=28.8

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKPCKCTE--C-----GKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSEECSS--S-----CCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CcccCCCCCCeeCCC--C-----CCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            555666666666666  6     6666666666666666666666666665

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=8.2e-10  Score=80.65  Aligned_cols=44  Identities=23%  Similarity=0.395  Sum_probs=27.5

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 h~~~h~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCME--C-----GKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTT--T-----TBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCC--C-----CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            445556666666666  6     6666666666666666666666666655

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.82  E-value=8.9e-10  Score=80.35  Aligned_cols=44  Identities=14%  Similarity=0.202  Sum_probs=29.2

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |.+.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|++|
T Consensus         3 h~~~h~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQ--C-----EKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSS--S-----SCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCC--C-----CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            455566666666666  6     6666666666666666666666666665

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=1.6e-09  Score=85.30  Aligned_cols=57  Identities=19%  Similarity=0.396  Sum_probs=52.5

Q ss_pred             ccCCcccccCcCCCcccchhhhhhhccccCCceeecC--CCCCcCChhHHHHHHHHhccc
Q 008103           76 KHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD--CGTLFSRRDSFITHRAFCDAL  133 (577)
Q Consensus        76 HtgeKpykC~~C~K~F~sks~L~~H~r~hgeKpy~C~--Cgk~F~~~s~L~~H~r~h~~~  133 (577)
                      +.+++||+|++|++.|. ...|+.|+++++++||.|+  |++.|..++.|.+|+++|++.
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~   63 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNT   63 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHHCSSSEEECTTCCSCCEEETTTHHHHHHTTSSS
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHHcCCcCccCCcccCcccccHHHHHHHHHhhccc
Confidence            34688999999999999 9999999988889999997  999999999999999998764

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.1e-09  Score=79.77  Aligned_cols=44  Identities=25%  Similarity=0.388  Sum_probs=27.6

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhh-hccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYS-RKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r-~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|++ +|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIE--C-----GKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSS--S-----CCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCc--c-----CchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            455566666666666  6     666666666666666 6666666666655

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=8e-10  Score=80.45  Aligned_cols=44  Identities=16%  Similarity=0.291  Sum_probs=29.4

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|+|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 H~~~h~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEK--C-----GKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETT--T-----TEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCC--C-----CCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            455666666666666  6     6666666666666666666666666665

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=6.8e-10  Score=80.86  Aligned_cols=44  Identities=20%  Similarity=0.311  Sum_probs=28.7

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |+++|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 h~~~H~~~~~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNE--C-----GKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETT--T-----TEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCC--C-----CcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            455666666666666  6     6666666666666666666666666665

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.81  E-value=3.7e-10  Score=88.54  Aligned_cols=55  Identities=16%  Similarity=0.358  Sum_probs=34.2

Q ss_pred             cccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhh
Q 008103           35 KQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKA   99 (577)
Q Consensus        35 ~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~   99 (577)
                      ..|++.|.+++||.|+.  |     ++.|.....|.   ++|++++||+|++|++.|.....+..
T Consensus         3 ~~h~~~H~~~k~~~C~~--C-----~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~~   57 (62)
T 1vd4_A            3 ETDERDSTNRASFKCPV--C-----SSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAMP   57 (62)
T ss_dssp             CCCSSSCCSSSEEECSS--S-----CCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCSC
T ss_pred             hhHHHHcCCCCCccCCC--C-----CchhccHHHhH---hhcCCCCCEECCCCCCccccCccccc
Confidence            44556666666666666  6     66666665554   56666666666666666666555543

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=1e-09  Score=79.92  Aligned_cols=44  Identities=18%  Similarity=0.248  Sum_probs=31.1

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|++|
T Consensus         3 h~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEE--C-----GKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSS--S-----CCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCC--C-----CCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            556666677777777  6     7777777777777777777777777766

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=1e-09  Score=79.84  Aligned_cols=44  Identities=16%  Similarity=0.225  Sum_probs=30.3

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 H~~~H~~~~~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRE--C-----GEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTT--T-----CCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccc--c-----ChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            556666667777776  6     6777777777777777777777777665

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=1.3e-09  Score=79.50  Aligned_cols=44  Identities=20%  Similarity=0.254  Sum_probs=31.1

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 h~~~h~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVE--C-----GKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSS--S-----CCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcc--c-----CchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            455666777777777  6     7777777777777777777777777766

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.78  E-value=3.7e-09  Score=80.14  Aligned_cols=47  Identities=17%  Similarity=0.376  Sum_probs=38.5

Q ss_pred             ccccCceeeCCCCCccCCCCCCccCChhhHHhHhh-hccCCcccccCcCCCcccc
Q 008103           40 KEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYS-RKHGEKKWKCEKCSKRYAV   93 (577)
Q Consensus        40 ~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r-~HtgeKpykC~~C~K~F~s   93 (577)
                      .+.++++|.|++  |     ++.|..+..|++|++ +|++++||+|++|++.|.+
T Consensus         6 ~~~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQS--C-----GKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSS--S-----CCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCC--C-----CcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            345778888888  8     888888888888886 8888888888888888865

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=2.1e-09  Score=78.21  Aligned_cols=40  Identities=23%  Similarity=0.462  Sum_probs=20.3

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeec
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  111 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C  111 (577)
                      |+++|++++||+|++|++.|..+..|..|+++ ++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            44445555555555555555555555555544 44455544

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=4.5e-09  Score=76.43  Aligned_cols=43  Identities=23%  Similarity=0.400  Sum_probs=41.0

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 789999998 7

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.6e-09  Score=79.01  Aligned_cols=44  Identities=20%  Similarity=0.310  Sum_probs=28.8

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKE--C-----GKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSS--S-----CCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCEECCc--C-----CchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            455666666666666  6     6666666666666666666666666654

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.77  E-value=4.9e-09  Score=76.22  Aligned_cols=43  Identities=26%  Similarity=0.498  Sum_probs=41.1

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            588999999999999999999999999999999 789999998 7

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=2.2e-09  Score=76.27  Aligned_cols=40  Identities=20%  Similarity=0.500  Sum_probs=27.7

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeec
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  111 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C  111 (577)
                      |+++|++++||+|++|++.|..+..|..|+++ ++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            56666777777777777777777777777766 56666666

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=4.8e-09  Score=76.37  Aligned_cols=43  Identities=26%  Similarity=0.407  Sum_probs=40.8

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      .|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            378999999999999999999999999999999 799999998 7

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=4.4e-09  Score=76.45  Aligned_cols=43  Identities=21%  Similarity=0.377  Sum_probs=40.8

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      .|+++|++++||+|++|+|.|..+..|++|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            378999999999999999999999999999999 789999998 7

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=4.7e-09  Score=76.45  Aligned_cols=43  Identities=23%  Similarity=0.417  Sum_probs=40.9

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      .|+++|++++||+|++|++.|..+..|++|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            488999999999999999999999999999999 789999998 7

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=4.8e-09  Score=76.27  Aligned_cols=43  Identities=21%  Similarity=0.426  Sum_probs=41.1

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            588999999999999999999999999999999 789999998 7

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=4.7e-09  Score=76.31  Aligned_cols=43  Identities=28%  Similarity=0.468  Sum_probs=40.8

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      .|+++|++++||+|++|+|.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            478999999999999999999999999999999 789999998 7

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=4.8e-09  Score=76.14  Aligned_cols=43  Identities=21%  Similarity=0.434  Sum_probs=41.2

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            689999999999999999999999999999999 789999998 7

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=2.1e-09  Score=78.25  Aligned_cols=42  Identities=21%  Similarity=0.365  Sum_probs=21.0

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|+
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            3 SGSSGTGEKPYKCNE--C-----GKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSCBCSS--S-----CCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCcCCCCCcCeECCC--C-----CcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            344444455555554  4     55555555555555555555555544

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.76  E-value=4.7e-09  Score=76.30  Aligned_cols=43  Identities=28%  Similarity=0.492  Sum_probs=41.1

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 899999998 7

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.76  E-value=4.7e-09  Score=76.41  Aligned_cols=43  Identities=21%  Similarity=0.437  Sum_probs=41.2

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|++|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 899999998 7

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.76  E-value=4.7e-09  Score=76.16  Aligned_cols=43  Identities=21%  Similarity=0.441  Sum_probs=41.2

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999 789999998 7

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=4.6e-09  Score=76.51  Aligned_cols=43  Identities=16%  Similarity=0.374  Sum_probs=41.2

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            689999999999999999999999999999999 789999998 7

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.76  E-value=2.2e-09  Score=76.44  Aligned_cols=40  Identities=23%  Similarity=0.493  Sum_probs=20.7

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeec
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  111 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C  111 (577)
                      |+++|++++||+|++|++.|..+..|..|+++ ++++||.|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            34445555555555555555555555555555 44555554

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.1e-09  Score=77.24  Aligned_cols=40  Identities=25%  Similarity=0.413  Sum_probs=23.3

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeec
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  111 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C  111 (577)
                      |+++|++++||+|++|++.|..+..|..|+++ ++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            55555555556666666666666666666555 45555555

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=5e-09  Score=76.17  Aligned_cols=43  Identities=26%  Similarity=0.386  Sum_probs=41.1

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 789999998 7

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=5e-09  Score=76.31  Aligned_cols=43  Identities=26%  Similarity=0.410  Sum_probs=40.8

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      .|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            378999999999999999999999999999999 789999998 7

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=4.6e-09  Score=76.35  Aligned_cols=43  Identities=23%  Similarity=0.403  Sum_probs=41.1

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            689999999999999999999999999999999 789999998 6

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=4.5e-09  Score=76.42  Aligned_cols=43  Identities=26%  Similarity=0.417  Sum_probs=41.0

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      .|+++|++++||+|++|++.|..+..|++|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            488999999999999999999999999999999 789999998 7

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=4.7e-09  Score=76.32  Aligned_cols=43  Identities=23%  Similarity=0.431  Sum_probs=41.1

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            589999999999999999999999999999999 789999998 7

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=4.8e-09  Score=76.26  Aligned_cols=43  Identities=26%  Similarity=0.397  Sum_probs=40.9

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 789999998 7

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.3e-09  Score=77.85  Aligned_cols=42  Identities=17%  Similarity=0.311  Sum_probs=21.6

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|+
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            3 SGSSGTGEKPYECSD--C-----GKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSSCCSS--S-----CCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             cccCCCCCCCcCCCC--C-----CchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            344444555555555  4     55555555555555555555555554

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.75  E-value=5.3e-09  Score=75.90  Aligned_cols=43  Identities=23%  Similarity=0.394  Sum_probs=41.0

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      .|+++|++++||+|++|++.|..+..|++|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            488999999999999999999999999999999 789999998 7

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=4.7e-09  Score=76.18  Aligned_cols=43  Identities=21%  Similarity=0.376  Sum_probs=41.1

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 789999998 7

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=4.5e-09  Score=76.28  Aligned_cols=43  Identities=21%  Similarity=0.390  Sum_probs=41.1

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            589999999999999999999999999999999 889999998 7

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.6e-09  Score=77.79  Aligned_cols=40  Identities=30%  Similarity=0.585  Sum_probs=19.7

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeec
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  111 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C  111 (577)
                      |+++|++++||+|++|++.|..+..|..|+++ ++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCC
Confidence            44444445555555555555555555555444 34444444

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=4.3e-09  Score=76.65  Aligned_cols=43  Identities=21%  Similarity=0.357  Sum_probs=41.3

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|.....|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            689999999999999999999999999999999 899999998 7

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.75  E-value=4.6e-09  Score=76.47  Aligned_cols=43  Identities=28%  Similarity=0.444  Sum_probs=40.9

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      .|+++|++++||+|++|+|.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            488999999999999999999999999999999 899999998 7

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=5.6e-09  Score=75.77  Aligned_cols=43  Identities=23%  Similarity=0.402  Sum_probs=41.1

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 789999998 7

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.2e-09  Score=78.07  Aligned_cols=42  Identities=24%  Similarity=0.381  Sum_probs=22.0

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|+
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNE--C-----GKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCCCTT--T-----TCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             cccccCCCCCeECCc--C-----ChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            444455555555555  5     55555555555555555555555554

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.3e-09  Score=78.00  Aligned_cols=40  Identities=28%  Similarity=0.462  Sum_probs=19.2

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeec
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  111 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C  111 (577)
                      |+++|++++||+|++|++.|..+..|..|+++ ++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSST
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCC
Confidence            44444444444444444444444444444444 34444444

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.1e-09  Score=78.38  Aligned_cols=42  Identities=21%  Similarity=0.355  Sum_probs=21.1

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|+|++  |     ++.|..+..|++|+++|++++||+|+
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            3 SGSSGTGERHYECSE--C-----GKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCCEECSS--S-----CCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             cccCcCCCCCeECCc--C-----CcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            344444455555554  4     55555555555555555555555553

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.6e-09  Score=75.93  Aligned_cols=40  Identities=20%  Similarity=0.360  Sum_probs=20.9

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeec
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  111 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C  111 (577)
                      |+++|++++||+|++|++.|..+..|.+|+++ ++++||.|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            34455555555555555555555555555555 44555554

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=5.3e-09  Score=76.03  Aligned_cols=43  Identities=21%  Similarity=0.434  Sum_probs=41.1

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 889999998 7

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.4e-09  Score=77.75  Aligned_cols=42  Identities=21%  Similarity=0.407  Sum_probs=22.1

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|+
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            3 SGSSGTGEKPYICNE--C-----GKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCSCCSEECSS--S-----CCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCcCEECCC--C-----ChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            344455555555555  5     55555555555555555555555554

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=5.2e-09  Score=75.35  Aligned_cols=42  Identities=24%  Similarity=0.352  Sum_probs=40.2

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      |+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            68899999999999999999999999999999 889999998 7

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.6e-09  Score=77.84  Aligned_cols=42  Identities=19%  Similarity=0.372  Sum_probs=21.2

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|+
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            3 SGSSGMGEKCYKCDV--C-----GKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCCCCBCSS--S-----CCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CccccCCCCCeECCC--C-----CcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            344444555555555  4     55555555555555555555555553

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=5.5e-09  Score=75.96  Aligned_cols=43  Identities=26%  Similarity=0.431  Sum_probs=41.1

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            588999999999999999999999999999999 899999998 7

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=5.4e-09  Score=75.87  Aligned_cols=43  Identities=26%  Similarity=0.461  Sum_probs=41.0

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 789999998 7

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=4.7e-09  Score=76.30  Aligned_cols=43  Identities=23%  Similarity=0.387  Sum_probs=41.2

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            589999999999999999999999999999999 899999998 7

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=5.7e-09  Score=75.74  Aligned_cols=43  Identities=23%  Similarity=0.409  Sum_probs=41.1

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|.....|+.|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999 789999998 7

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=4.9e-09  Score=76.21  Aligned_cols=43  Identities=23%  Similarity=0.389  Sum_probs=41.1

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 799999998 7

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=5.3e-09  Score=76.05  Aligned_cols=43  Identities=26%  Similarity=0.455  Sum_probs=41.1

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 789999998 7

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=5.5e-09  Score=75.93  Aligned_cols=43  Identities=26%  Similarity=0.454  Sum_probs=41.1

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      .|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 899999998 7

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=1.9e-09  Score=78.48  Aligned_cols=42  Identities=24%  Similarity=0.367  Sum_probs=22.8

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|+
T Consensus         3 H~~~H~~~~~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            3 SGSSGTGEKPYECKV--C-----SKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSEECSS--S-----CCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCCcCeECCC--C-----CcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            444555555555555  5     55555555555555555555555554

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=4.7e-09  Score=76.19  Aligned_cols=43  Identities=26%  Similarity=0.455  Sum_probs=41.1

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 789999998 7

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=6.3e-09  Score=75.51  Aligned_cols=43  Identities=30%  Similarity=0.496  Sum_probs=41.1

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|+.|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            589999999999999999999999999999999 889999998 7

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=2.1e-09  Score=78.06  Aligned_cols=42  Identities=24%  Similarity=0.392  Sum_probs=24.8

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|+
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            3 SGSSGTGEKPYKCNE--C-----GKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCEECTT--S-----CCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             ccCCCCCCCCeeccc--c-----CChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            445555556666665  5     56666666666666666666666654

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=3.2e-09  Score=77.44  Aligned_cols=41  Identities=22%  Similarity=0.331  Sum_probs=21.0

Q ss_pred             ccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           38 TTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        38 ~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      ++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|+
T Consensus         4 ~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            4 GSSGTGEKPYKCQV--C-----GKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             SSSCSSCCSCBCSS--S-----CCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCcccCCCC--C-----CcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            34444555555555  4     55555555555555555555555554

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=3.2e-09  Score=77.22  Aligned_cols=42  Identities=17%  Similarity=0.352  Sum_probs=22.8

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|+
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            3 SGSSGTGENPFICSE--C-----GKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCSCCSCBCTT--T-----CCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCEECCc--c-----CcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            444555555555555  5     55555555555555555555555554

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.73  E-value=2.1e-09  Score=78.38  Aligned_cols=42  Identities=19%  Similarity=0.326  Sum_probs=25.7

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|+
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            3 SGSSGTGEKPFECAE--C-----GKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSEECSS--S-----SCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCEECCC--C-----CcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455555666666666  5     66666666666666666666666664

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=2e-09  Score=78.48  Aligned_cols=42  Identities=21%  Similarity=0.449  Sum_probs=22.5

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|+|++  |     ++.|..+..|++|+++|++++||+|+
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSD--C-----GKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSS--S-----CCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cccccCCCCCEECcc--c-----CCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            444455555555555  5     55555555555555555555555554

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=6.3e-09  Score=75.64  Aligned_cols=43  Identities=28%  Similarity=0.489  Sum_probs=40.8

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      .|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            478999999999999999999999999999999 789999998 7

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.72  E-value=7e-09  Score=75.49  Aligned_cols=43  Identities=16%  Similarity=0.287  Sum_probs=40.8

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      .|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478999999999999999999999999999999 789999998 7

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=2.5e-09  Score=77.71  Aligned_cols=42  Identities=24%  Similarity=0.404  Sum_probs=22.7

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|+
T Consensus         3 H~~~H~~~~~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGE--C-----GKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCEECSS--S-----CCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CccCCCCCCCeECCC--C-----CCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            444555555555555  5     55555555555555555555555554

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=2.4e-09  Score=77.02  Aligned_cols=40  Identities=25%  Similarity=0.460  Sum_probs=24.0

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeec
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  111 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C  111 (577)
                      |+++|++++||+|++|++.|..+..|..|+++ ++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            55556666666666666666666666666655 45566655

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=3.1e-09  Score=77.30  Aligned_cols=42  Identities=21%  Similarity=0.350  Sum_probs=23.3

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|+
T Consensus         3 H~~~H~~~~~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            3 SGSSGTGERHYECSE--C-----GKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCCEECSS--S-----CCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCcccCCCCCCCCCC--C-----CcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            444555555555555  5     55555555555555555555555554

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=5.1e-09  Score=76.12  Aligned_cols=43  Identities=26%  Similarity=0.445  Sum_probs=41.1

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 899999998 7

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=2.4e-09  Score=77.73  Aligned_cols=42  Identities=21%  Similarity=0.366  Sum_probs=24.8

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|+
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            3 SGSSGTGEKPFECSE--C-----QKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSEECSS--S-----CCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCcCCCC--C-----CcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            445555556666665  5     56666666666666666666666654

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=5.3e-09  Score=76.29  Aligned_cols=43  Identities=28%  Similarity=0.444  Sum_probs=40.8

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      .|+++|++++||+|++|++.|..+..|++|+++ ++++||.|+ |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            378899999999999999999999999999999 899999998 7

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=6.5e-09  Score=75.43  Aligned_cols=43  Identities=26%  Similarity=0.387  Sum_probs=41.1

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999 789999998 7

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=3.2e-09  Score=77.35  Aligned_cols=42  Identities=19%  Similarity=0.377  Sum_probs=22.4

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|+|++  |     ++.|..+..|.+|+++|++++||+|+
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKE--C-----RKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSS--S-----CCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCcCCCCCcCCCC--c-----CchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            344455555555555  5     55555555555555555555555553

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=2.8e-09  Score=77.68  Aligned_cols=42  Identities=21%  Similarity=0.349  Sum_probs=25.6

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|+|++  |     ++.|..+..|++|+++|+++|||+|+
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            3 SGSSGTGQRPYECIE--C-----GKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCCCSSSEECSS--S-----CCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CccccCCCcCcCCCC--C-----CCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            455555666666666  5     66666666666666666666666664

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=2.5e-09  Score=76.80  Aligned_cols=40  Identities=28%  Similarity=0.537  Sum_probs=19.3

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeec
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  111 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C  111 (577)
                      |+++|++++||+|++|++.|..+..|..|+++ ++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            44444444444444444444444444444444 34444444

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=5.2e-09  Score=76.06  Aligned_cols=43  Identities=35%  Similarity=0.525  Sum_probs=40.8

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      .|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            488999999999999999999999999999999 789999998 7

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=1.9e-09  Score=78.54  Aligned_cols=42  Identities=17%  Similarity=0.210  Sum_probs=21.6

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|+
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNV--C-----GKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             SCCCCSSCCSEEETT--T-----TEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             ccccCCCCCCeECcc--c-----ChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            344444555555555  4     55555555555555555555555553

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=7.1e-09  Score=75.35  Aligned_cols=43  Identities=16%  Similarity=0.221  Sum_probs=40.9

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      .|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            488999999999999999999999999999999 899999998 7

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=4.3e-09  Score=76.64  Aligned_cols=41  Identities=22%  Similarity=0.367  Sum_probs=20.2

Q ss_pred             ccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           38 TTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        38 ~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      ++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|+
T Consensus         4 ~~~h~~~k~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            4 GSSGTGEKPYECDV--C-----RKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSSCBCTT--T-----CCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCcCCCCCcCCCC--c-----CchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            34444445555554  4     45555555555555555555555443

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=3.3e-09  Score=77.26  Aligned_cols=42  Identities=19%  Similarity=0.389  Sum_probs=23.5

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|+
T Consensus         3 h~~~H~~~k~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            3 SGSSGAGKKLFKCNE--C-----KKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCSSCCCBCTT--T-----CCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCCEECCc--c-----CcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            444555555555555  5     55555555555555555555555554

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=6.4e-09  Score=75.59  Aligned_cols=43  Identities=30%  Similarity=0.550  Sum_probs=41.2

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            689999999999999999999999999999999 789999998 7

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=6.7e-09  Score=75.60  Aligned_cols=43  Identities=28%  Similarity=0.434  Sum_probs=40.7

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      .|+++|++++||+|++|++.|..+..|+.|+++ ++++||.|+ |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            378899999999999999999999999999999 799999998 7

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=3.9e-09  Score=75.27  Aligned_cols=40  Identities=25%  Similarity=0.463  Sum_probs=21.1

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeec
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  111 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C  111 (577)
                      |+++|++++||+|++|++.|..+..|+.|+++ ++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            34455555555555555555555555555555 44555544

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=2.8e-09  Score=76.78  Aligned_cols=41  Identities=15%  Similarity=0.250  Sum_probs=20.8

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCccccc
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKC   84 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC   84 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            3 SGSSGHTRKRYECSK--C-----QATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CCSCCCCCSSEECTT--T-----CCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             cccccCCCCCeECCC--C-----CCccCCHHHHHHHHHHcCCCCCcCC
Confidence            344444455555554  4     5555555555555555555555554

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.70  E-value=2.7e-09  Score=80.78  Aligned_cols=51  Identities=16%  Similarity=0.180  Sum_probs=46.2

Q ss_pred             CCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceee
Q 008103           60 SRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYR  110 (577)
Q Consensus        60 ~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~  110 (577)
                      +|.|.....|..|+++|++++||+|++|++.|.....|..|+++ ++++||.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            67888888999999999999999999999999999999999998 7888874

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=8.5e-09  Score=74.93  Aligned_cols=43  Identities=26%  Similarity=0.451  Sum_probs=40.8

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            589999999999999999999999999999999 789999998 5

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=2.9e-09  Score=76.71  Aligned_cols=40  Identities=23%  Similarity=0.407  Sum_probs=20.9

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeec
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  111 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C  111 (577)
                      |+++|++++||+|++|++.|..+..|..|+++ ++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            44555555555555555555555555555555 44455554

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=3e-09  Score=77.23  Aligned_cols=41  Identities=27%  Similarity=0.528  Sum_probs=22.8

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      |+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            45555555555555555555555555555555 455555553

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=6.4e-09  Score=75.60  Aligned_cols=43  Identities=28%  Similarity=0.461  Sum_probs=41.1

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      .|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 889999998 7

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=3.1e-09  Score=75.65  Aligned_cols=40  Identities=28%  Similarity=0.507  Sum_probs=20.3

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeec
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  111 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C  111 (577)
                      |+++|++++||+|++|++.|..+..|..|+++ ++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            34445555555555555555555555555554 44555544

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=4.1e-09  Score=76.61  Aligned_cols=43  Identities=19%  Similarity=0.254  Sum_probs=31.8

Q ss_pred             ccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           38 TTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        38 ~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      .+.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         4 ~~~h~~~~~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDV--C-----HKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSS--S-----CCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCeeCcc--c-----CcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45566777777777  7     7777777777777777777777777776

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.69  E-value=4.6e-09  Score=82.22  Aligned_cols=53  Identities=21%  Similarity=0.370  Sum_probs=47.1

Q ss_pred             HHhHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-CCCCcCChhHHH
Q 008103           69 IKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFI  124 (577)
Q Consensus        69 Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~~~s~L~  124 (577)
                      |..|+++|++++||+|++|++.|.....|.   ++ ++++||.|+ |++.|.....+.
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcccc
Confidence            568999999999999999999999998886   56 789999999 999998876543

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=2.9e-09  Score=77.31  Aligned_cols=42  Identities=24%  Similarity=0.353  Sum_probs=25.5

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|+
T Consensus         3 H~~~H~~~~~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            3 SGSSGTGEKPYNCEE--C-----GKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSSSSSCCCSEECTT--T-----CCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCcCcCCCcCccCCC--C-----CCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            455555566666666  5     66666666666666666666666664

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=1.1e-08  Score=74.45  Aligned_cols=43  Identities=19%  Similarity=0.335  Sum_probs=40.7

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhcc-c-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSK-T-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r-~-hgeKpy~C~-C  113 (577)
                      .|+++|++++||+|++|++.|..+..|..|++ + ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            48899999999999999999999999999999 7 789999998 7

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=3e-09  Score=77.47  Aligned_cols=42  Identities=17%  Similarity=0.330  Sum_probs=21.2

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|+|++  |     ++.|..+..|.+|+++|++++||+|+
T Consensus         3 h~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            3 SGSSGSGERPFKCNE--C-----GKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCSCSSCCCSCCCSS--S-----CCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCcCCCCCCCeECCC--C-----CcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            344444555555555  4     55555555555555555555555543

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.68  E-value=4.3e-09  Score=74.75  Aligned_cols=40  Identities=15%  Similarity=0.390  Sum_probs=19.3

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeec
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  111 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C  111 (577)
                      |+++|++++||+|++|++.|..+..|+.|+++ ++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            34444444455555555555555555555444 44444444

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=2.6e-09  Score=76.99  Aligned_cols=41  Identities=17%  Similarity=0.282  Sum_probs=25.6

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeec
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  111 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C  111 (577)
                      +|+++|++++||+|++|++.|.....|..|+++ ++++||.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            355666666666666666666666666666666 55666665

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=2.6e-09  Score=77.67  Aligned_cols=40  Identities=20%  Similarity=0.325  Sum_probs=19.7

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeec
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  111 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C  111 (577)
                      |+++|++++||+|++|++.|..+..|..|+++ ++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP   43 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSC
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            44444445555555555555555555555444 34444444

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.2e-08  Score=74.19  Aligned_cols=43  Identities=23%  Similarity=0.417  Sum_probs=40.6

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      .|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            488999999999999999999999999999999 899999998 5

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.66  E-value=1e-08  Score=75.49  Aligned_cols=42  Identities=24%  Similarity=0.421  Sum_probs=36.4

Q ss_pred             cccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCC
Q 008103           41 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSK   89 (577)
Q Consensus        41 ~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K   89 (577)
                      +..+++|.|++  |     ++.|.....|.+|+++|++++||+|++|+|
T Consensus         7 ~~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEI--C-----GKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETT--T-----TEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCC--C-----CcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            45778899988  8     899999999999999999999999999876

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.65  E-value=1.5e-08  Score=76.65  Aligned_cols=45  Identities=24%  Similarity=0.499  Sum_probs=41.0

Q ss_pred             CCCCcccccccccccCChHHHHHHHH-hcCCCccccccccccccCceeeCCCCCccCCCCCCccCC
Q 008103            1 MATNRFICEVCNKGFQREQNLQLHRR-GHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGD   65 (577)
Q Consensus         1 t~~kpy~C~~CgK~F~~~s~L~~H~r-~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~   65 (577)
                      ++++||+|++|++.|.++..|++|++ +|.             ++++|+|++  |     ++.|..
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~-------------~~k~~~C~~--C-----~k~F~~   53 (54)
T 2eps_A            8 SVGKPYICQSCGKGFSRPDHLNGHIKQVHT-------------SERPHKCQV--W-----VSGPSS   53 (54)
T ss_dssp             CSSCCEECSSSCCEESSHHHHHHHHHHTSC-------------CCCCCCSSS--S-----CCSSCC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHhcC-------------CCCCccCCC--C-----CCCCCC
Confidence            36899999999999999999999997 886             889999999  9     999975

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=5.5e-09  Score=76.07  Aligned_cols=43  Identities=19%  Similarity=0.329  Sum_probs=30.4

Q ss_pred             ccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           38 TTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        38 ~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      ++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++|
T Consensus         4 ~~~h~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSE--C-----GKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSS--S-----CCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCC--C-----CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34566677777777  6     7777777777777777777777777766

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=7.1e-09  Score=74.76  Aligned_cols=40  Identities=15%  Similarity=0.267  Sum_probs=20.1

Q ss_pred             ccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCccccc
Q 008103           38 TTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKC   84 (577)
Q Consensus        38 ~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC   84 (577)
                      ++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|
T Consensus         4 ~~~h~~~~~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            4 GSSGAAKTTSECQE--C-----GKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             SCSCSSSCCCCCTT--T-----CCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCCCCcCeECCC--C-----CcccCCHHHHHHHHHHHCCCCCCCC
Confidence            34444455555554  4     5555555555555555555555544

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=6.7e-09  Score=74.98  Aligned_cols=40  Identities=28%  Similarity=0.465  Sum_probs=21.9

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeec
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  111 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C  111 (577)
                      |+++|++++||+|++|++.|.....|..|+++ ++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            45555555555555555555555555555555 45555544

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.7e-08  Score=73.36  Aligned_cols=42  Identities=26%  Similarity=0.453  Sum_probs=39.4

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      ++++|++++||+|++|++.|..+..|+.|+++ ++++||.|+ |
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            46789999999999999999999999999999 789999998 7

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=6.1e-09  Score=75.81  Aligned_cols=42  Identities=14%  Similarity=0.237  Sum_probs=27.1

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccC-CcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG-EKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htg-eKpykC~   85 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++ ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNK--C-----EKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCEECSS--S-----CCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CccccCCCCCEECcC--C-----CCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            455566666666666  6     6666666666666666666 6666665

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.63  E-value=8.6e-09  Score=74.65  Aligned_cols=42  Identities=17%  Similarity=0.264  Sum_probs=30.4

Q ss_pred             ccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCC
Q 008103           40 KEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCS   88 (577)
Q Consensus        40 ~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~   88 (577)
                      .|.++++|.|++  |     ++.|..+..|.+|+++|+++++|.|++|+
T Consensus         4 ~h~~~k~~~C~~--C-----~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPV--C-----GLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETT--T-----TEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCC--C-----CcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            456677777777  7     77777777777777777777777777774

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=2.5e-09  Score=87.62  Aligned_cols=63  Identities=24%  Similarity=0.475  Sum_probs=47.8

Q ss_pred             hhHHhHhhhccCCcccccCcCCCcccchhhhhhhccccCCceeecC-CCCCcCChhHHHHHHHHhc
Q 008103           67 TGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFITHRAFCD  131 (577)
Q Consensus        67 s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~hgeKpy~C~-Cgk~F~~~s~L~~H~r~h~  131 (577)
                      ..|.+|+++|.++|||.|++|++.|. ...|..|+..++++||.|+ |++.|.+ ..|..|+++|.
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~~~c~~~~~~C~~C~~~~~~-~~l~~H~~~c~   66 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHEDYCGARTELCGNCGRNVLV-KDLKTHPEVCG   66 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHHHHHHHCEEECSSSCCEEET-TGGGTHHHHBT
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHHHhHcCCCceEcccCCCcCcH-HHHHHHHHHcc
Confidence            35677888888888888888888884 7778888833778888888 8887764 77888887763

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=1.5e-08  Score=73.72  Aligned_cols=41  Identities=22%  Similarity=0.325  Sum_probs=39.0

Q ss_pred             hhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           73 YSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        73 ~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      +++|++++||+|++|++.|..+..|+.|+++ ++++||.|+ |
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5789999999999999999999999999999 789999998 7

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=3e-08  Score=72.33  Aligned_cols=45  Identities=16%  Similarity=0.260  Sum_probs=35.0

Q ss_pred             ccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcC
Q 008103           38 TTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC   87 (577)
Q Consensus        38 ~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C   87 (577)
                      .+.|.++++|.|+++.|     ++.|..+..|.+|+++|+++|||+|++|
T Consensus         4 ~~~H~~~k~~~C~~~~C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGC-----GWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCSSCCCCCEECCSSSC-----CCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCcCCCCCeECCCCCC-----CCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34566788888872227     8888888888888888888888888877

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=3.9e-08  Score=71.44  Aligned_cols=43  Identities=19%  Similarity=0.327  Sum_probs=39.3

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCc
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEK   86 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~   86 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|++
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            3 SGSSGSGEKPFQCEE--C-----GKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSSSBCCSS--S-----CCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             cccCCCCCcCCCCCC--C-----CcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            455667999999999  9     999999999999999999999999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=1.5e-08  Score=73.83  Aligned_cols=41  Identities=15%  Similarity=0.212  Sum_probs=26.5

Q ss_pred             ccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           38 TTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        38 ~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      .+.|.++++|.|++  |     ++.|..+..|++|+++|+++|||+|+
T Consensus         4 ~~~h~~~k~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            4 GSSGHGERGHRCSD--C-----GKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSCCCSS--S-----CCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCCcCCCC--C-----CCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            34555666666666  6     66666666666666666666666665

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=3.1e-08  Score=72.01  Aligned_cols=42  Identities=19%  Similarity=0.445  Sum_probs=39.9

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      .|+++|++++||+|++|++.|..+..|+.|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            488999999999999999999999999999999 899999996

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.57  E-value=3e-08  Score=72.06  Aligned_cols=42  Identities=24%  Similarity=0.515  Sum_probs=39.9

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999999 789999996

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=3.7e-08  Score=71.47  Aligned_cols=42  Identities=26%  Similarity=0.434  Sum_probs=39.9

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            588999999999999999999999999999999 789999996

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=4.1e-08  Score=71.25  Aligned_cols=43  Identities=23%  Similarity=0.404  Sum_probs=39.3

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCc
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEK   86 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~   86 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|++
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNE--C-----GKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSSCSSSCCS--S-----CCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             cccccCCCCCeECCC--C-----CcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            455667999999999  9     999999999999999999999999974

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=3.4e-08  Score=71.65  Aligned_cols=42  Identities=29%  Similarity=0.496  Sum_probs=40.1

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            689999999999999999999999999999999 899999996

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=3.8e-08  Score=71.40  Aligned_cols=42  Identities=24%  Similarity=0.423  Sum_probs=39.8

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      .|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            488999999999999999999999999999999 789999996

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.56  E-value=2.6e-08  Score=72.10  Aligned_cols=41  Identities=24%  Similarity=0.458  Sum_probs=38.8

Q ss_pred             hhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-CC
Q 008103           74 SRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CG  114 (577)
Q Consensus        74 r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cg  114 (577)
                      ..|+++|||+|++|++.|..+..|..|+++ +++++|.|+ |+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            468999999999999999999999999999 899999999 96

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.56  E-value=3.1e-08  Score=72.92  Aligned_cols=39  Identities=26%  Similarity=0.477  Sum_probs=36.4

Q ss_pred             CCCCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCc
Q 008103            1 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTC   54 (577)
Q Consensus         1 t~~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C   54 (577)
                      +.+++|+|++|++.|.+...|.+|+++|+             ++++|.|++  |
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~--C   46 (48)
T 2epr_A            8 RTRKQVACEICGKIFRDVYHLNRHKLSHS-------------GEKPYSSGP--S   46 (48)
T ss_dssp             CCCCSEEETTTTEEESSHHHHHHHGGGSC-------------SCCCCCSCC--C
T ss_pred             CCCcCeeCCCCCcccCCHHHHHHHHHhcC-------------CCCCccCCC--C
Confidence            36899999999999999999999999996             889999999  8

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=3.6e-08  Score=71.64  Aligned_cols=42  Identities=24%  Similarity=0.472  Sum_probs=40.0

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      +|+++|++++||+|++|+|.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999999 789999996

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=3.8e-08  Score=71.62  Aligned_cols=41  Identities=32%  Similarity=0.503  Sum_probs=39.2

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      |+++|++++||+|++|++.|..+..|++|+++ ++++||.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            78899999999999999999999999999999 789999996

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=4.2e-08  Score=71.02  Aligned_cols=42  Identities=24%  Similarity=0.452  Sum_probs=39.9

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            588999999999999999999999999999999 789999996

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=3.8e-08  Score=71.27  Aligned_cols=42  Identities=29%  Similarity=0.502  Sum_probs=40.0

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            588999999999999999999999999999999 889999996

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=1.8e-08  Score=73.57  Aligned_cols=42  Identities=21%  Similarity=0.427  Sum_probs=39.4

Q ss_pred             HhhhccCCcccccC--cCCCcccchhhhhhhccc-cCCceeecC-C
Q 008103           72 HYSRKHGEKKWKCE--KCSKRYAVQSDWKAHSKT-CGTREYRCD-C  113 (577)
Q Consensus        72 H~r~HtgeKpykC~--~C~K~F~sks~L~~H~r~-hgeKpy~C~-C  113 (577)
                      |.++|++++||+|+  +|++.|..+..|..|+++ +++|||.|+ |
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56789999999998  899999999999999999 789999998 7

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=4.8e-08  Score=70.72  Aligned_cols=42  Identities=24%  Similarity=0.457  Sum_probs=40.0

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999999 789999996

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=4e-08  Score=71.14  Aligned_cols=42  Identities=26%  Similarity=0.504  Sum_probs=39.8

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999999 789999995

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=4.6e-08  Score=70.96  Aligned_cols=42  Identities=21%  Similarity=0.455  Sum_probs=39.8

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      .|+++|+++++|+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            488999999999999999999999999999999 789999996

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=4.6e-08  Score=70.95  Aligned_cols=42  Identities=26%  Similarity=0.489  Sum_probs=39.9

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999999 789999996

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=4.1e-08  Score=71.25  Aligned_cols=43  Identities=21%  Similarity=0.367  Sum_probs=39.3

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCc
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEK   86 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~   86 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|++
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            3 SGSSGTGEKPYKCNE--C-----GKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCTTCCSS--S-----CCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCcCCCCCcCeECCC--C-----CcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            455667999999999  9     999999999999999999999999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=4.8e-08  Score=70.95  Aligned_cols=42  Identities=26%  Similarity=0.492  Sum_probs=39.8

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            588999999999999999999999999999999 789999996

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=1.6e-08  Score=73.25  Aligned_cols=41  Identities=17%  Similarity=0.341  Sum_probs=26.4

Q ss_pred             ccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           38 TTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        38 ~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      .+.|.++++|+|++  |     ++.|..+..|++|+++|++++||+|+
T Consensus         4 ~~~h~~~k~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            4 GSSGTGQKPFECTH--C-----GKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCCSCCSEEETT--T-----TEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCCcCccCCC--C-----CCccCChHHHHHHHHHhCCCCCCCCC
Confidence            34555666666666  6     66666666666666666666666665

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=3.7e-08  Score=71.35  Aligned_cols=42  Identities=26%  Similarity=0.502  Sum_probs=39.9

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      .|+++|++++||+|++|++.|..+..|+.|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            488999999999999999999999999999999 899999996

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=4.8e-08  Score=70.98  Aligned_cols=42  Identities=21%  Similarity=0.448  Sum_probs=39.6

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      .|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            378999999999999999999999999999999 789999996

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=4.7e-08  Score=70.76  Aligned_cols=42  Identities=24%  Similarity=0.505  Sum_probs=39.9

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            588999999999999999999999999999999 789999996

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=5e-08  Score=70.86  Aligned_cols=42  Identities=24%  Similarity=0.457  Sum_probs=39.8

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      .|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            488999999999999999999999999999999 889999996

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.53  E-value=5.2e-08  Score=69.16  Aligned_cols=41  Identities=20%  Similarity=0.359  Sum_probs=37.6

Q ss_pred             ccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           38 TTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        38 ~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      ++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|+
T Consensus         2 ~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            2 SSGSSGENPYECSE--C-----GKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CSSSSSCCSEECSS--S-----CCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCccCCC--c-----ChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            44566899999999  9     99999999999999999999999995

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=3.2e-08  Score=70.01  Aligned_cols=38  Identities=18%  Similarity=0.361  Sum_probs=21.0

Q ss_pred             ccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCccccc
Q 008103           40 KEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKC   84 (577)
Q Consensus        40 ~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC   84 (577)
                      .|.++++|.|++  |     ++.|..+..|++|+++|++++||+|
T Consensus         4 ~h~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQE--C-----GKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSS--S-----CCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCC--C-----CCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            344555555555  5     5555555555555555555555554

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=6e-08  Score=70.43  Aligned_cols=41  Identities=22%  Similarity=0.483  Sum_probs=39.0

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      |+++|++++||+|++|++.|..+..|+.|+++ ++++||.|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            77899999999999999999999999999999 789999996

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=5.6e-08  Score=70.60  Aligned_cols=42  Identities=29%  Similarity=0.514  Sum_probs=40.0

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            588999999999999999999999999999999 899999996

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=6.4e-08  Score=68.54  Aligned_cols=41  Identities=17%  Similarity=0.294  Sum_probs=37.5

Q ss_pred             ccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           38 TTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        38 ~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      ++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|.
T Consensus         2 ~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            2 SSGSSGEKPYSCAE--C-----KETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CSSSCSCCSCBCTT--T-----CCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CcCcCCCCCeECCC--C-----CCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            44566899999999  9     99999999999999999999999994

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.51  E-value=6e-08  Score=69.67  Aligned_cols=38  Identities=21%  Similarity=0.369  Sum_probs=34.9

Q ss_pred             CCCCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCC
Q 008103            1 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE   51 (577)
Q Consensus         1 t~~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~   51 (577)
                      ++++||+|++|++.|.++..|..|+++|+             ++++|.|++
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   43 (43)
T 2yrm_A            6 SGNGAFFCNECDCRFSEEASLKRHTLQTH-------------SDKSGPSSG   43 (43)
T ss_dssp             SSSCCBCCSSSCCCBSSHHHHHHHHHHHT-------------CTTCSSSCC
T ss_pred             CCCCCEECCCCCCeeCChHHHHHHHHhhC-------------CCCCccCCC
Confidence            46899999999999999999999999996             889999974

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.50  E-value=6.8e-08  Score=69.13  Aligned_cols=42  Identities=21%  Similarity=0.337  Sum_probs=38.5

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|+
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKPYVCNE--C-----GKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SCCCSSSSSSSCCTT--T-----CCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCcCCCCCcCeECCC--C-----CCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            455667999999999  9     99999999999999999999999995

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.50  E-value=6.9e-08  Score=69.10  Aligned_cols=42  Identities=21%  Similarity=0.368  Sum_probs=38.5

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|+
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEKPYECNE--C-----QKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CSSCCSCCCSEECTT--T-----CCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CccCCCCCCCeECCC--C-----CcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            455667999999999  9     99999999999999999999999995

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=7.8e-08  Score=69.03  Aligned_cols=42  Identities=21%  Similarity=0.428  Sum_probs=39.8

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      .|+++|++++||+|++|++.|.....|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            589999999999999999999999999999999 789999995

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.49  E-value=5.2e-08  Score=70.79  Aligned_cols=42  Identities=21%  Similarity=0.415  Sum_probs=39.9

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999999 789999996

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.48  E-value=5.1e-08  Score=70.82  Aligned_cols=42  Identities=19%  Similarity=0.349  Sum_probs=40.0

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999999 889999996

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=7.3e-08  Score=69.98  Aligned_cols=42  Identities=21%  Similarity=0.369  Sum_probs=39.4

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cC-CceeecC
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CG-TREYRCD  112 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hg-eKpy~C~  112 (577)
                      .|+++|++++||+|++|++.|.....|..|+++ ++ ++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            488999999999999999999999999999999 77 8999995

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.47  E-value=8.2e-08  Score=68.00  Aligned_cols=41  Identities=17%  Similarity=0.295  Sum_probs=37.6

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCccccc
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKC   84 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC   84 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|
T Consensus         2 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQ--C-----GKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTT--T-----TCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCC--c-----cchhCCHHHHHHHHHHhCCCCCCCC
Confidence            445667999999999  9     9999999999999999999999998

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=8.9e-08  Score=68.05  Aligned_cols=41  Identities=20%  Similarity=0.303  Sum_probs=37.6

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCccccc
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKC   84 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC   84 (577)
                      |++.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|
T Consensus         2 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEI--C-----GTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSS--S-----CCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCC--C-----CCccCCHHHHHHHHHhcCCCCCCCC
Confidence            345667999999999  9     9999999999999999999999998

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.47  E-value=6.1e-08  Score=69.49  Aligned_cols=42  Identities=14%  Similarity=0.290  Sum_probs=38.6

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|+
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENPYECCE--C-----GKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SCCSSSSCCSCEETT--T-----TEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CccccCCCcCeeCCC--C-----CCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            456667999999999  9     99999999999999999999999995

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=8e-08  Score=68.99  Aligned_cols=42  Identities=10%  Similarity=0.209  Sum_probs=38.5

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|.
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGENPFKCSK--C-----DRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSCCCSCCCSEECSS--S-----SCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CccccCCCCCeECCC--C-----CchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            455667999999999  9     99999999999999999999999994

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=1e-07  Score=69.32  Aligned_cols=41  Identities=24%  Similarity=0.481  Sum_probs=38.3

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      ++++|++++||+|++|++.|..+..|+.|+++ +++|||.|+
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            36789999999999999999999999999999 899999996

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.45  E-value=2.7e-08  Score=75.22  Aligned_cols=52  Identities=15%  Similarity=0.247  Sum_probs=46.9

Q ss_pred             ccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccc
Q 008103           12 NKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWK   83 (577)
Q Consensus        12 gK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpyk   83 (577)
                      +|.|.....|..|+++|.             ++++|.|++  |     ++.|.....|.+|+++|++++||+
T Consensus         3 ~k~~~~~~~l~~h~~~H~-------------~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQ-------------SEQPATCPI--C-----YAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHT-------------SSCCEECTT--T-----CCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcC-------------CCCCccCCC--C-----CcccCCHHHHHHHHHHhccCCCCC
Confidence            467888888888888886             889999999  9     999999999999999999999984

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=1e-07  Score=68.47  Aligned_cols=41  Identities=17%  Similarity=0.232  Sum_probs=39.0

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      |+++|++++||+|++|++.|.....|..|+++ ++++||.|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            78899999999999999999999999999999 889999995

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.45  E-value=1e-07  Score=67.54  Aligned_cols=41  Identities=12%  Similarity=0.221  Sum_probs=37.6

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCccccc
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKC   84 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC   84 (577)
                      |.+.|.++++|.|++  |     ++.|..+..|++|+++|++++||+|
T Consensus         2 H~~~H~~~~~~~C~~--C-----~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQ--C-----GKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSS--S-----CCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCC--C-----CcccCCHHHHHHHhhhcCCCCCCCC
Confidence            345667999999999  9     9999999999999999999999998

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.45  E-value=8.4e-08  Score=68.06  Aligned_cols=41  Identities=15%  Similarity=0.260  Sum_probs=37.6

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCccccc
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKC   84 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC   84 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|
T Consensus         2 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCET--C-----GARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTT--T-----CCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCC--c-----ChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            345667999999999  9     9999999999999999999999998

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.43  E-value=8.4e-08  Score=69.43  Aligned_cols=43  Identities=19%  Similarity=0.339  Sum_probs=39.1

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCc
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEK   86 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~   86 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|+.
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQ--C-----GKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSSEETT--T-----TEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             cccCCCCCCCeECCC--C-----ChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            455667999999999  9     999999999999999999999999974

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.43  E-value=1.3e-07  Score=67.88  Aligned_cols=40  Identities=18%  Similarity=0.413  Sum_probs=31.2

Q ss_pred             ccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCc
Q 008103           40 KEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEK   86 (577)
Q Consensus        40 ~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~   86 (577)
                      .|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|++
T Consensus         4 ~h~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            4 GSSGNGAFFCNE--C-----DCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CCSSSCCBCCSS--S-----CCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CcCCCCCEECCC--C-----CCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            345778888887  7     888888888888888888888888764

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.41  E-value=1e-07  Score=68.86  Aligned_cols=41  Identities=20%  Similarity=0.479  Sum_probs=38.1

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  112 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~  112 (577)
                      +.++|++++||+|++|+|.|..+..|+.|+++ ++++||.|+
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            45789999999999999999999999999999 789999995

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.41  E-value=8.7e-08  Score=69.47  Aligned_cols=42  Identities=14%  Similarity=0.194  Sum_probs=38.6

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||+|+
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKE--C-----GMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSS--S-----CCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccCCCCCeeCcc--c-----ChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455667999999999  9     99999999999999999999999996

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=9e-08  Score=68.71  Aligned_cols=43  Identities=16%  Similarity=0.310  Sum_probs=39.0

Q ss_pred             ccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           36 QKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        36 ~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      .|++.|.++++|.|++  |     ++.|.....|.+|+++|++++||+|.
T Consensus         2 ~H~~~H~~~~~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNE--C-----GKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETT--T-----TEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcc--c-----CcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3556677999999999  9     99999999999999999999999984

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.36  E-value=4.5e-08  Score=82.79  Aligned_cols=55  Identities=13%  Similarity=0.283  Sum_probs=46.4

Q ss_pred             ccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc
Q 008103           38 TTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        38 ~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~  103 (577)
                      .++|.++++|.|++  |     ++.|.....|++|+++|++++||+|..|.    +...|..|.++
T Consensus        17 ~~~H~~~kpy~C~~--C-----~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~   71 (88)
T 1x6f_A           17 NGPRLQNSTYQCKH--C-----DSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKY   71 (88)
T ss_dssp             CCSCCCCSCEECSS--S-----CCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCC
T ss_pred             ccccCCCCCCcCCC--C-----CCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhcc
Confidence            34566899999999  9     99999999999999999999999998765    45566667766

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=2.4e-07  Score=66.64  Aligned_cols=42  Identities=19%  Similarity=0.183  Sum_probs=38.3

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE   85 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~   85 (577)
                      |++.|.++++|.|++  |     ++.|..+..|.+|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~--C-----~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            3 SGSSGSGEKPYECNE--C-----GKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCSEECSS--S-----CCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCcccCCCcCeECCC--C-----CcccCchHHHHHHHhHhcCCCCCCCC
Confidence            456667999999999  9     99999999999999999999999883

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=2.4e-07  Score=65.45  Aligned_cols=38  Identities=18%  Similarity=0.518  Sum_probs=36.0

Q ss_pred             hhccCCcccccCcCCCcccchhhhhhhccc-cCCceeec
Q 008103           74 SRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  111 (577)
Q Consensus        74 r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C  111 (577)
                      ++|++++||+|++|++.|..+..|+.|+++ ++++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            578999999999999999999999999999 78999998

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=2.8e-07  Score=75.22  Aligned_cols=61  Identities=21%  Similarity=0.483  Sum_probs=53.7

Q ss_pred             ccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhcccc
Q 008103           34 LKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTC  104 (577)
Q Consensus        34 ~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~h  104 (577)
                      +..|.+.+.++++|.|++  |     ++.| ....|..|+ .|.+++||.|+.|++.|. ...|..|++++
T Consensus         5 L~~H~~~~c~~r~~~C~~--C-----~~~~-~~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c   65 (75)
T 2d9k_A            5 SSGHEETECPLRLAVCQH--C-----DLEL-SILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVC   65 (75)
T ss_dssp             CSCCCCCCCCCCCEECSS--S-----CCEE-CHHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHB
T ss_pred             HHhhCcccCCCcccCCcc--c-----ChHh-hHHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHc
Confidence            455666677999999999  9     9999 499999999 999999999999999887 58999999883

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.27  E-value=3.6e-07  Score=63.90  Aligned_cols=36  Identities=22%  Similarity=0.483  Sum_probs=32.5

Q ss_pred             CCCCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeC
Q 008103            1 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLC   49 (577)
Q Consensus         1 t~~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C   49 (577)
                      ++++||+|++|++.|..+..|..|+++|+             ++++|.|
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~~   37 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNVHR-------------RDRARLR   37 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTC-------------CSCTTTT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHHcC-------------CCcccee
Confidence            47899999999999999999999999997             6777765

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.23  E-value=2.6e-07  Score=78.09  Aligned_cols=59  Identities=10%  Similarity=0.315  Sum_probs=48.6

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-CCCCcCChhHHHHHHHHhccc
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDAL  133 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~~~s~L~~H~r~h~~~  133 (577)
                      .|.++|++++||+|++|++.|.....|..|+++ ++++||.|. |.+    +..|..|.++|...
T Consensus        15 ~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~----~~~~~~~~~~~~~~   75 (88)
T 1x6f_A           15 LGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER----RKQLLSKQKYADGA   75 (88)
T ss_dssp             CCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC----CCCCCCCCCCCCCS
T ss_pred             ccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh----HHHHHhhhcccccc
Confidence            446779999999999999999999999999999 789999998 754    44555667766543

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.21  E-value=5.1e-07  Score=61.98  Aligned_cols=32  Identities=19%  Similarity=0.479  Sum_probs=20.4

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhccc
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~  103 (577)
                      |+++|+++|||+|++|++.|..+..|..|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   33 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHH
Confidence            55666666666666666666666666666655

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.21  E-value=8.8e-07  Score=72.15  Aligned_cols=38  Identities=26%  Similarity=0.360  Sum_probs=34.0

Q ss_pred             CCCCcccccc--cccccCChHHHHHHH-HhcCCCccccccccccccCceeeCCC
Q 008103            1 MATNRFICEV--CNKGFQREQNLQLHR-RGHNLPWKLKQKTTKEVKRKVYLCPE   51 (577)
Q Consensus         1 t~~kpy~C~~--CgK~F~~~s~L~~H~-r~H~~p~~~~~h~~~~~~ekpy~C~~   51 (577)
                      +++|||+|.+  |+|.|.+..+|++|+ ++|+             +++||.|..
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHT-------------gEKP~~~~~   63 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHK-------------SDLPAFSAE   63 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSS-------------SCCCCCCCS
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCC-------------CCCCccccc
Confidence            4799999975  999999999999997 6896             899999875

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.16  E-value=1.2e-06  Score=71.33  Aligned_cols=41  Identities=15%  Similarity=0.190  Sum_probs=30.8

Q ss_pred             cccCceeeCCCCCccCCCCCCccCChhhHHhHh-hhccCCcccccCc
Q 008103           41 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHY-SRKHGEKKWKCEK   86 (577)
Q Consensus        41 ~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~-r~HtgeKpykC~~   86 (577)
                      ..++|||+|+++.|     +|+|..+..|++|+ ++|+++|||.|..
T Consensus        22 ~sGEKPYkC~~~~C-----gKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGC-----FAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTC-----CCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCc-----ChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            45778888876557     88888888888886 5788888887754

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.15  E-value=4.7e-07  Score=62.20  Aligned_cols=29  Identities=24%  Similarity=0.489  Sum_probs=12.8

Q ss_pred             hccCCcccccCcCCCcccchhhhhhhccc
Q 008103           75 RKHGEKKWKCEKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        75 ~HtgeKpykC~~C~K~F~sks~L~~H~r~  103 (577)
                      +|++++||+|++|++.|..+..|..|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKT   31 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHH
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHH
Confidence            34444444444444444444444444444

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.09  E-value=1.7e-06  Score=58.51  Aligned_cols=26  Identities=35%  Similarity=0.646  Sum_probs=25.0

Q ss_pred             CcccccccccccCChHHHHHHHHhcC
Q 008103            4 NRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         4 kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      |||+|++|+|.|.....|..|+++|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~   26 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHE   26 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhC
Confidence            68999999999999999999999997

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.05  E-value=1.4e-06  Score=58.81  Aligned_cols=21  Identities=14%  Similarity=0.276  Sum_probs=10.0

Q ss_pred             CCccCChhhHHhHhhhccCCc
Q 008103           60 SRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus        60 ~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      ++.|..+..|.+|+++|++++
T Consensus        14 ~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A           14 LKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCEESSHHHHHHHHHHTSCTT
T ss_pred             cchhCCHHHHHHHHHHHcCCC
Confidence            444444444444444444443

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.04  E-value=2.4e-06  Score=59.55  Aligned_cols=36  Identities=14%  Similarity=0.315  Sum_probs=28.7

Q ss_pred             ccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCccccc
Q 008103           42 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKC   84 (577)
Q Consensus        42 ~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC   84 (577)
                      .++++|.|++  |     ++.|.....|.+|+++|++++||.|
T Consensus         2 ~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            2 WPPRSYTCSF--C-----KREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             CCSSSEECTT--T-----CCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCceECCC--C-----CcccCCHHHHHHHHHHcCCCcccee
Confidence            3677888888  7     8888888888888888888888765

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.04  E-value=1.7e-06  Score=58.56  Aligned_cols=32  Identities=13%  Similarity=0.326  Sum_probs=16.0

Q ss_pred             ccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103           42 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus        42 ~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      .++++|.|++  |     ++.|..+..|.+|+++|++++
T Consensus         3 ~~~k~~~C~~--C-----~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            3 SGKRPFVCRI--C-----LSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             SCCSCEECSS--S-----CCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCcCeeCCC--C-----CcccCCHHHHHHHHHHcCCCC
Confidence            3444555554  4     555555555555555554443

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.95  E-value=3.4e-06  Score=60.21  Aligned_cols=29  Identities=21%  Similarity=0.338  Sum_probs=27.2

Q ss_pred             CCCCcccccc--cccccCChHHHHHHHHhcC
Q 008103            1 MATNRFICEV--CNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         1 t~~kpy~C~~--CgK~F~~~s~L~~H~r~H~   29 (577)
                      +++|||+|++  |+|.|.++..|++|+++|+
T Consensus         5 ~gekp~~C~~~~C~k~F~~~~~L~~H~r~Ht   35 (38)
T 2eln_A            5 SSGILLKCPTDGCDYSTPDKYKLQAHLKVHT   35 (38)
T ss_dssp             SCCCCEECSSSSCCCEESCHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            4799999986  9999999999999999997

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.92  E-value=4.6e-06  Score=53.08  Aligned_cols=27  Identities=22%  Similarity=0.476  Sum_probs=25.4

Q ss_pred             CCcccccccccccCChHHHHHHHHhcC
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      ++||+|++|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            689999999999999999999999984

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.90  E-value=4.1e-06  Score=53.65  Aligned_cols=27  Identities=30%  Similarity=0.696  Sum_probs=25.3

Q ss_pred             CCcccccccccccCChHHHHHHHHhcC
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      ++||+|++|++.|..+..|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            589999999999999999999999883

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.89  E-value=6.5e-06  Score=56.76  Aligned_cols=36  Identities=19%  Similarity=0.452  Sum_probs=26.6

Q ss_pred             ccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCccc
Q 008103           42 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKW   82 (577)
Q Consensus        42 ~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpy   82 (577)
                      .++++|.|+++.|     ++.|..+..|++|+++|++++||
T Consensus         2 ~~~k~~~C~~~~C-----~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            2 SDDKPFLCTAPGC-----GQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TTCCCEECCCTTT-----CCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCcceECCCCCC-----CcccCCHHHHHHHHHHhCCCCCC
Confidence            3667788874337     78888888888888888877776

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.88  E-value=3.3e-06  Score=58.31  Aligned_cols=26  Identities=15%  Similarity=0.324  Sum_probs=12.6

Q ss_pred             hccCCcccccCcCCCcccchhhhhhh
Q 008103           75 RKHGEKKWKCEKCSKRYAVQSDWKAH  100 (577)
Q Consensus        75 ~HtgeKpykC~~C~K~F~sks~L~~H  100 (577)
                      +|+++|||+|++|++.|..+..|..|
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H   28 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRH   28 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHH
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHH
Confidence            34444444444444444444444444

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.85  E-value=1e-05  Score=54.88  Aligned_cols=29  Identities=24%  Similarity=0.606  Sum_probs=27.3

Q ss_pred             CCCCcccccccccccCChHHHHHHHHhcC
Q 008103            1 MATNRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         1 t~~kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      ++++||+|++|+|.|..+..|..|+++|+
T Consensus         5 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elr_A            5 SSGKTHLCDMCGKKFKSKGTLKSHKLLHT   33 (36)
T ss_dssp             CCCSSCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCCCCeecCcCCCCcCchHHHHHHHHHhc
Confidence            46899999999999999999999999996

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.85  E-value=9.4e-06  Score=55.22  Aligned_cols=29  Identities=24%  Similarity=0.539  Sum_probs=27.3

Q ss_pred             CCCCcccccccccccCChHHHHHHHHhcC
Q 008103            1 MATNRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         1 t~~kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      ++++||+|++|++.|.....|..|+++|+
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elq_A            5 SSGKPFKCSLCEYATRSKSNLKAHMNRHS   33 (36)
T ss_dssp             CCCCSEECSSSSCEESCHHHHHHHHHHSS
T ss_pred             CCCCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            46899999999999999999999999996

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=97.84  E-value=8.8e-06  Score=54.86  Aligned_cols=33  Identities=18%  Similarity=0.328  Sum_probs=25.3

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCccccc
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKC   84 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC   84 (577)
                      +||.|++  |     ++.|.....|..|+++|++++||.+
T Consensus         1 kp~~C~~--C-----~k~F~~~~~L~~H~~~H~~~~~~~r   33 (33)
T 1rim_A            1 YKFACPE--C-----PKRFMRSDHLSKHITLHELLGEERR   33 (33)
T ss_dssp             CCCCCSS--S-----CCCCSSHHHHHHHHHHHTTTCCCCC
T ss_pred             CcccCCC--C-----CchhCCHHHHHHHHHHhCCCCCCCC
Confidence            4677877  7     7888888888888888888877753

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.83  E-value=6.7e-06  Score=56.22  Aligned_cols=36  Identities=25%  Similarity=0.512  Sum_probs=32.7

Q ss_pred             cccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcc
Q 008103           39 TKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKK   81 (577)
Q Consensus        39 ~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKp   81 (577)
                      +.|.++++|.|++  |     ++.|..+..|.+|+++|+++||
T Consensus         2 ~~h~~~k~~~C~~--C-----~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPV--C-----EKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETT--T-----TEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCC--C-----CCccCCHHHHHHHHHHHcCCCC
Confidence            3456899999999  9     9999999999999999999875

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.83  E-value=4.5e-06  Score=57.22  Aligned_cols=19  Identities=11%  Similarity=0.154  Sum_probs=8.0

Q ss_pred             CCccCCh-hhHHhHhhhccC
Q 008103           60 SRALGDL-TGIKKHYSRKHG   78 (577)
Q Consensus        60 ~k~F~~~-s~Lk~H~r~Htg   78 (577)
                      ++.|..+ ..|.+|+++|++
T Consensus        16 ~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A           16 DFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             SCEECSSCHHHHHHHHHHHT
T ss_pred             ChhhccCHHHHHHHHHhcCC
Confidence            4444444 444444444433

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.81  E-value=6.6e-06  Score=56.03  Aligned_cols=32  Identities=16%  Similarity=0.279  Sum_probs=15.8

Q ss_pred             cccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCC
Q 008103           41 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE   79 (577)
Q Consensus        41 ~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htge   79 (577)
                      |.++++|+|++  |     ++.|..+..|.+|+++|+++
T Consensus         4 h~~~k~~~C~~--C-----~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            4 GSSGLLYDCHI--C-----ERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             SCCCCCEECSS--S-----CCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCeECCC--C-----CCccCCHHHHHHHHHHhcCC
Confidence            34444555554  4     45555555555555555443

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.81  E-value=8.1e-06  Score=52.14  Aligned_cols=27  Identities=30%  Similarity=0.675  Sum_probs=25.5

Q ss_pred             CCcccccccccccCChHHHHHHHHhcC
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      ++||+|++|+|.|..+..|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            589999999999999999999999985

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.78  E-value=7.8e-06  Score=55.42  Aligned_cols=19  Identities=21%  Similarity=0.240  Sum_probs=8.7

Q ss_pred             CCccCChhhHHhHhhhccC
Q 008103           60 SRALGDLTGIKKHYSRKHG   78 (577)
Q Consensus        60 ~k~F~~~s~Lk~H~r~Htg   78 (577)
                      ++.|..+..|.+|+++|++
T Consensus        16 ~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elt_A           16 SYASAIKANLNVHLRKHTG   34 (36)
T ss_dssp             SCEESSHHHHHHHHHHHTC
T ss_pred             CcccCCHHHHHHHHHHccC
Confidence            4444444444444444443

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.78  E-value=4.5e-06  Score=59.04  Aligned_cols=13  Identities=15%  Similarity=0.284  Sum_probs=4.7

Q ss_pred             CCccCChhhHHhH
Q 008103           60 SRALGDLTGIKKH   72 (577)
Q Consensus        60 ~k~F~~~s~Lk~H   72 (577)
                      +|.|..++.|++|
T Consensus        15 gK~F~~~s~L~~H   27 (36)
T 1fv5_A           15 GIAFSSPSTLEAH   27 (36)
T ss_dssp             TEECSCHHHHHHH
T ss_pred             CCccCCHhHccCc
Confidence            3333333333333

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.78  E-value=1.1e-05  Score=54.83  Aligned_cols=29  Identities=41%  Similarity=0.658  Sum_probs=27.1

Q ss_pred             CCCCcccccccccccCChHHHHHHHHhcC
Q 008103            1 MATNRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         1 t~~kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      ++++||+|++|++.|.....|..|+++|+
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2els_A            5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHT   33 (36)
T ss_dssp             SCCCCEECTTTCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCEECCCCCceeCCHHHHHHHHHHhC
Confidence            36899999999999999999999999996

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.77  E-value=5.9e-06  Score=56.95  Aligned_cols=34  Identities=18%  Similarity=0.449  Sum_probs=28.1

Q ss_pred             ccCCcccccC--cCCCcccchhhhhhhccc-cCCcee
Q 008103           76 KHGEKKWKCE--KCSKRYAVQSDWKAHSKT-CGTREY  109 (577)
Q Consensus        76 HtgeKpykC~--~C~K~F~sks~L~~H~r~-hgeKpy  109 (577)
                      |++++||+|+  .|++.|..+..|++|+++ ++++||
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            5678889998  498888888888888888 677776

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=97.77  E-value=1.6e-05  Score=53.62  Aligned_cols=34  Identities=18%  Similarity=0.443  Sum_probs=30.7

Q ss_pred             hccCCcccccCcCCCcccchhhhhhhccc-cCCce
Q 008103           75 RKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTRE  108 (577)
Q Consensus        75 ~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKp  108 (577)
                      +|++++||+|++|++.|..+..|..|+++ ++++|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            47899999999999999999999999999 66664

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.77  E-value=1.4e-05  Score=53.70  Aligned_cols=34  Identities=18%  Similarity=0.501  Sum_probs=30.8

Q ss_pred             hccCCcccccCcCCCcccchhhhhhhccc-cCCce
Q 008103           75 RKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTRE  108 (577)
Q Consensus        75 ~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKp  108 (577)
                      +|++++||+|++|++.|..+..|..|+++ ++++|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            47889999999999999999999999999 67764

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.73  E-value=1.7e-05  Score=56.54  Aligned_cols=33  Identities=15%  Similarity=0.273  Sum_probs=23.5

Q ss_pred             ccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCC
Q 008103           42 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE   79 (577)
Q Consensus        42 ~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htge   79 (577)
                      .+++||+|+++.|     +|.|..+..|++|+++|+++
T Consensus         5 ~gekp~~C~~~~C-----~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            5 SSGILLKCPTDGC-----DYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SCCCCEECSSSSC-----CCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCC-----CCccCCHHHHHHHHHhcCCC
Confidence            4677777765446     77777777777777777764

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=97.73  E-value=2.1e-05  Score=53.64  Aligned_cols=36  Identities=22%  Similarity=0.403  Sum_probs=32.0

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE   79 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htge   79 (577)
                      |++.|.++++|+|+.  |     ++.|..+..|.+|+++|+++
T Consensus         2 H~~~h~~~k~~~C~~--C-----~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPD--C-----DRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTT--T-----CCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCC--C-----CcccCcHHHHHHHHHHhccC
Confidence            455667999999999  9     99999999999999999874

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.73  E-value=1.7e-05  Score=50.92  Aligned_cols=27  Identities=19%  Similarity=0.543  Sum_probs=25.7

Q ss_pred             CCcccccccccccCChHHHHHHHHhcC
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      ++||+|++|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~   27 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHD   27 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhc
Confidence            589999999999999999999999996

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.70  E-value=1.6e-05  Score=58.55  Aligned_cols=29  Identities=21%  Similarity=0.583  Sum_probs=27.5

Q ss_pred             CCCCcccccccccccCChHHHHHHHH-hcC
Q 008103            1 MATNRFICEVCNKGFQREQNLQLHRR-GHN   29 (577)
Q Consensus         1 t~~kpy~C~~CgK~F~~~s~L~~H~r-~H~   29 (577)
                      +++|||+|.+|+|.|..+..|..|++ +|.
T Consensus         3 t~~kp~~C~~C~k~F~~~~~L~~H~~~~H~   32 (48)
T 3iuf_A            3 DRDKPYACDICGKRYKNRPGLSYHYAHSHL   32 (48)
T ss_dssp             TTTSCEECTTTCCEESSHHHHHHHHHHSSC
T ss_pred             CCCcCEECCCcCcccCCHHHHHHHhhhhcC
Confidence            57899999999999999999999999 886

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.86  E-value=5.7e-06  Score=52.15  Aligned_cols=26  Identities=35%  Similarity=0.760  Sum_probs=24.3

Q ss_pred             CcccccccccccCChHHHHHHHHhcC
Q 008103            4 NRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         4 kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      |||+|++|++.|.....|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            68999999999999999999999873

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.68  E-value=8.1e-06  Score=54.55  Aligned_cols=23  Identities=9%  Similarity=0.013  Sum_probs=11.3

Q ss_pred             CCccCChhhHHhHhhhccCCccc
Q 008103           60 SRALGDLTGIKKHYSRKHGEKKW   82 (577)
Q Consensus        60 ~k~F~~~s~Lk~H~r~HtgeKpy   82 (577)
                      ++.|.....|.+|+++|++++||
T Consensus         9 ~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            9 PKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CcccCCHHHHHHHHHHHccCCCC
Confidence            45555555555555555544443

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.65  E-value=2.7e-05  Score=49.72  Aligned_cols=26  Identities=42%  Similarity=1.013  Sum_probs=24.8

Q ss_pred             CcccccccccccCChHHHHHHHHhcC
Q 008103            4 NRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         4 kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      +||+|++|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhc
Confidence            68999999999999999999999996

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.65  E-value=2.2e-05  Score=62.90  Aligned_cols=40  Identities=10%  Similarity=0.217  Sum_probs=24.2

Q ss_pred             cccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCC
Q 008103           41 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCS   88 (577)
Q Consensus        41 ~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~   88 (577)
                      +..++||+|.+  |     +|.|..+..|++|+++|++++ +.|.+|+
T Consensus         8 ~~~ekpy~C~~--C-----gK~F~~~s~L~~H~r~Htg~~-~~~~~~~   47 (66)
T 2epp_A            8 LREAGILPCGL--C-----GKVFTDANRLRQHEAQHGVTS-LQLGYID   47 (66)
T ss_dssp             CCCCCCCCCTT--T-----CCCCSCHHHHHHHHHHHTTTS-CCCCSCC
T ss_pred             CCCccCcCCCC--C-----CCccCCHHHHHhhhhhhCCCc-ccccccc
Confidence            44566666666  6     666666666666666666543 3444443

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.64  E-value=2.1e-05  Score=55.59  Aligned_cols=25  Identities=28%  Similarity=0.704  Sum_probs=23.8

Q ss_pred             CCCCcccccccccccCChHHHHHHH
Q 008103            1 MATNRFICEVCNKGFQREQNLQLHR   25 (577)
Q Consensus         1 t~~kpy~C~~CgK~F~~~s~L~~H~   25 (577)
                      ++||||+|++|+|.|.++..|++|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            4799999999999999999999998

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.64  E-value=8.4e-06  Score=59.60  Aligned_cols=31  Identities=23%  Similarity=0.612  Sum_probs=15.4

Q ss_pred             hhhccCCcccccC--cCCCcccchhhhhhhccc
Q 008103           73 YSRKHGEKKWKCE--KCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        73 ~r~HtgeKpykC~--~C~K~F~sks~L~~H~r~  103 (577)
                      ...|++++||+|+  +|+|.|..+..|+.|+++
T Consensus        10 ~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~   42 (47)
T 1ncs_A           10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQT   42 (47)
T ss_dssp             SCEEETTTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred             HhccCCCCCeECCCCCCCCccCCHHHHHHHHHH
Confidence            3445555555553  355555555555555544

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.61  E-value=2.8e-05  Score=56.74  Aligned_cols=39  Identities=23%  Similarity=0.468  Sum_probs=32.9

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      +...|.++++|.|+++.|     ++.|..+..|++|+++|+++|
T Consensus         9 ~~~~H~~~k~~~C~~~~C-----~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            9 KYVKEMPDKTFECLFPGC-----TKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GSCEEETTTEEECCCTTC-----CCEECSSSSHHHHHHHHTTTC
T ss_pred             HHhccCCCCCeECCCCCC-----CCccCCHHHHHHHHHHccCCC
Confidence            345577999999974339     999999999999999999875

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.60  E-value=2.3e-05  Score=50.20  Aligned_cols=26  Identities=38%  Similarity=0.696  Sum_probs=24.8

Q ss_pred             CcccccccccccCChHHHHHHHHhcC
Q 008103            4 NRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         4 kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      +||+|++|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHE   26 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGG
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhc
Confidence            68999999999999999999999986

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.60  E-value=3.5e-05  Score=52.28  Aligned_cols=33  Identities=15%  Similarity=0.339  Sum_probs=29.5

Q ss_pred             hhccCCcccccCcCCCcccchhhhhhhccc-cCC
Q 008103           74 SRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGT  106 (577)
Q Consensus        74 r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hge  106 (577)
                      +.|++++||+|++|++.|..+..|..|+++ +++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            2 SSGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CCSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            357889999999999999999999999998 444

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.59  E-value=3.2e-05  Score=49.51  Aligned_cols=26  Identities=19%  Similarity=0.464  Sum_probs=24.8

Q ss_pred             CcccccccccccCChHHHHHHHHhcC
Q 008103            4 NRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         4 kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      +||+|++|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~   26 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHc
Confidence            68999999999999999999999986

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.56  E-value=4.1e-05  Score=51.95  Aligned_cols=32  Identities=25%  Similarity=0.428  Sum_probs=20.0

Q ss_pred             cccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCC
Q 008103           41 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE   79 (577)
Q Consensus        41 ~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htge   79 (577)
                      |.++++|+|++  |     ++.|..+..|.+|+++|+++
T Consensus         4 h~~~k~~~C~~--C-----~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            4 GSSGKPFKCSL--C-----EYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SCCCCSEECSS--S-----SCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCccCCC--C-----CchhCCHHHHHHHHHHhccC
Confidence            34566666666  6     66666666666666666654

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.53  E-value=4.7e-05  Score=50.11  Aligned_cols=27  Identities=30%  Similarity=0.789  Sum_probs=25.6

Q ss_pred             CCccccc--ccccccCChHHHHHHHHhcC
Q 008103            3 TNRFICE--VCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         3 ~kpy~C~--~CgK~F~~~s~L~~H~r~H~   29 (577)
                      ++||+|.  .|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~   29 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHcc
Confidence            5899999  89999999999999999996

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.53  E-value=3.7e-05  Score=52.53  Aligned_cols=34  Identities=24%  Similarity=0.381  Sum_probs=30.3

Q ss_pred             hhccCCcccccCcCCCcccch-hhhhhhccc-cCCc
Q 008103           74 SRKHGEKKWKCEKCSKRYAVQ-SDWKAHSKT-CGTR  107 (577)
Q Consensus        74 r~HtgeKpykC~~C~K~F~sk-s~L~~H~r~-hgeK  107 (577)
                      ++|++++||+|++|++.|..+ ..|..|+++ +++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            578999999999999999999 999999998 5553

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.53  E-value=4.6e-05  Score=51.49  Aligned_cols=33  Identities=24%  Similarity=0.561  Sum_probs=29.6

Q ss_pred             hccCCcccccCcCCCcccchhhhhhhccc-cCCc
Q 008103           75 RKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTR  107 (577)
Q Consensus        75 ~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeK  107 (577)
                      +|++++||+|++|++.|..+..|..|+++ +++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            58899999999999999999999999998 5543

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.52  E-value=3.3e-05  Score=53.13  Aligned_cols=29  Identities=28%  Similarity=0.605  Sum_probs=26.8

Q ss_pred             CCCCcccccc--cccccCChHHHHHHHHhcC
Q 008103            1 MATNRFICEV--CNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         1 t~~kpy~C~~--CgK~F~~~s~L~~H~r~H~   29 (577)
                      ++++||+|.+  |+|.|..+..|..|+++|+
T Consensus         4 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~   34 (37)
T 1va1_A            4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHT   34 (37)
T ss_dssp             SSCCCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            4789999995  9999999999999999986

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.51  E-value=3.1e-05  Score=49.28  Aligned_cols=26  Identities=35%  Similarity=0.609  Sum_probs=24.7

Q ss_pred             CcccccccccccCChHHHHHHHHhcC
Q 008103            4 NRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         4 kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      +||+|++|++.|.....|..|+++|.
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHS   26 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhc
Confidence            68999999999999999999999986

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.50  E-value=4.9e-05  Score=48.14  Aligned_cols=25  Identities=12%  Similarity=0.303  Sum_probs=18.6

Q ss_pred             CceeecC-CCCCcCChhHHHHHHHHh
Q 008103          106 TREYRCD-CGTLFSRRDSFITHRAFC  130 (577)
Q Consensus       106 eKpy~C~-Cgk~F~~~s~L~~H~r~h  130 (577)
                      +|||.|+ |++.|..++.|.+|+++|
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHc
Confidence            4677777 777777777777777765

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.50  E-value=6e-05  Score=50.87  Aligned_cols=33  Identities=18%  Similarity=0.310  Sum_probs=20.9

Q ss_pred             cccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103           41 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus        41 ~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      |.++++|.|++  |     ++.|..+..|.+|+++|++||
T Consensus         4 h~~~~~~~C~~--C-----~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            4 GSSGKTHLCDM--C-----GKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCSSCBCTT--T-----CCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCeecCc--C-----CCCcCchHHHHHHHHHhcCCC
Confidence            34566666666  6     666666666666666666553

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.49  E-value=4.5e-05  Score=47.98  Aligned_cols=25  Identities=28%  Similarity=0.739  Sum_probs=23.2

Q ss_pred             cccccccccccCChHHHHHHHHhcC
Q 008103            5 RFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         5 py~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      ||+|++|+|.|..+..|..|+++|+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcC
Confidence            6999999999999999999999986

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.62  E-value=1.6e-05  Score=51.28  Aligned_cols=27  Identities=30%  Similarity=0.594  Sum_probs=25.5

Q ss_pred             CCcccccccccccCChHHHHHHHHhcC
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      ++||+|++|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            589999999999999999999999986

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.61  E-value=1.6e-05  Score=51.15  Aligned_cols=26  Identities=31%  Similarity=0.625  Sum_probs=24.7

Q ss_pred             CcccccccccccCChHHHHHHHHhcC
Q 008103            4 NRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         4 kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      +||+|++|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHT   26 (29)
Confidence            68999999999999999999999986

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.48  E-value=6.3e-05  Score=49.23  Aligned_cols=26  Identities=42%  Similarity=0.901  Sum_probs=24.7

Q ss_pred             Cccccc--ccccccCChHHHHHHHHhcC
Q 008103            4 NRFICE--VCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         4 kpy~C~--~CgK~F~~~s~L~~H~r~H~   29 (577)
                      +||+|+  +|+|.|.....|..|+++|+
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~   28 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhc
Confidence            689998  99999999999999999996

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.47  E-value=6.2e-05  Score=51.75  Aligned_cols=34  Identities=24%  Similarity=0.534  Sum_probs=22.5

Q ss_pred             ccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103           42 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus        42 ~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      .++++|.|+++.|     ++.|..+..|++|+++|+++|
T Consensus         4 ~~~k~~~C~~~~C-----~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            4 GKKKQHICHIQGC-----GKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSCCCEECCSTTC-----CCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCC-----CCccCCHHHHHHHHHhcCCCC
Confidence            4667777763336     777777777777777776653

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.46  E-value=1.4e-05  Score=53.36  Aligned_cols=30  Identities=23%  Similarity=0.396  Sum_probs=28.0

Q ss_pred             cccccCcCCCcccchhhhhhhccc-cCCcee
Q 008103           80 KKWKCEKCSKRYAVQSDWKAHSKT-CGTREY  109 (577)
Q Consensus        80 KpykC~~C~K~F~sks~L~~H~r~-hgeKpy  109 (577)
                      |||+|++|++.|.....|..|+++ ++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            689999999999999999999999 788887

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.46  E-value=4.5e-05  Score=48.41  Aligned_cols=26  Identities=31%  Similarity=0.557  Sum_probs=24.7

Q ss_pred             CcccccccccccCChHHHHHHHHhcC
Q 008103            4 NRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         4 kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      |||+|++|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHI   26 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhc
Confidence            68999999999999999999999985

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.43  E-value=7.4e-05  Score=50.64  Aligned_cols=32  Identities=19%  Similarity=0.427  Sum_probs=22.1

Q ss_pred             ccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103           42 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus        42 ~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      ..+++|.|++  |     ++.|.....|.+|+++|+++|
T Consensus         5 ~~~k~~~C~~--C-----~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            5 SSGKIFTCEY--C-----NKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             SCCCCEECTT--T-----CCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCEECCC--C-----CceeCCHHHHHHHHHHhCCCC
Confidence            4566777777  6     777777777777777776653

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.39  E-value=4.1e-05  Score=48.79  Aligned_cols=25  Identities=24%  Similarity=0.349  Sum_probs=15.8

Q ss_pred             CceeecC-CCCCcCChhHHHHHHHHh
Q 008103          106 TREYRCD-CGTLFSRRDSFITHRAFC  130 (577)
Q Consensus       106 eKpy~C~-Cgk~F~~~s~L~~H~r~h  130 (577)
                      +|||.|+ |++.|.+++.|.+|+++|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhc
Confidence            3566666 666666666666666554

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.35  E-value=0.0001  Score=50.65  Aligned_cols=34  Identities=15%  Similarity=0.375  Sum_probs=30.2

Q ss_pred             cccccCceeeCCCCCccCCCCCCccCChhhHHhH-hhhccCC
Q 008103           39 TKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKH-YSRKHGE   79 (577)
Q Consensus        39 ~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H-~r~Htge   79 (577)
                      +.|.+++||+|++  |     ++.|..+..|++| +++|+++
T Consensus         2 ~~H~~~k~~~C~~--C-----~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQ--C-----HYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSCEEECSS--S-----SCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCcCeECCC--C-----CcccCCHHHHHHHHHHHccCc
Confidence            3456899999999  9     9999999999999 8999865

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.32  E-value=0.00017  Score=57.67  Aligned_cols=42  Identities=12%  Similarity=0.204  Sum_probs=33.9

Q ss_pred             hccCCcccccCcCCCcccchhhhhhhccccCCceeecC-CCCC
Q 008103           75 RKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTL  116 (577)
Q Consensus        75 ~HtgeKpykC~~C~K~F~sks~L~~H~r~hgeKpy~C~-Cgk~  116 (577)
                      .|.++|||+|.+|+|.|..+..|++|+++|......|. |...
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~~~~~~~~~   49 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQLGYIDLP   49 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSCCCCSCCCC
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCccccccccCC
Confidence            47789999999999999999999999999544445555 5543

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.32  E-value=8.6e-05  Score=47.76  Aligned_cols=26  Identities=31%  Similarity=0.744  Sum_probs=24.2

Q ss_pred             CcccccccccccCChHHHHHH-HHhcC
Q 008103            4 NRFICEVCNKGFQREQNLQLH-RRGHN   29 (577)
Q Consensus         4 kpy~C~~CgK~F~~~s~L~~H-~r~H~   29 (577)
                      +||+|++|++.|.....|..| +++|.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~   27 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHS   27 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHcc
Confidence            689999999999999999999 68886

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.28  E-value=0.0001  Score=46.90  Aligned_cols=26  Identities=23%  Similarity=0.701  Sum_probs=24.6

Q ss_pred             Cccccc--ccccccCChHHHHHHHHhcC
Q 008103            4 NRFICE--VCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         4 kpy~C~--~CgK~F~~~s~L~~H~r~H~   29 (577)
                      +||+|+  +|+|.|.....|..|+++|+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            689999  99999999999999999985

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.25  E-value=0.00013  Score=53.49  Aligned_cols=31  Identities=26%  Similarity=0.576  Sum_probs=17.8

Q ss_pred             ccCceeeCCCCCccCCCCCCccCChhhHHhHhh-hccCC
Q 008103           42 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYS-RKHGE   79 (577)
Q Consensus        42 ~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r-~Htge   79 (577)
                      .++++|.|++  |     +|.|..+..|++|++ +|+++
T Consensus         3 t~~kp~~C~~--C-----~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            3 DRDKPYACDI--C-----GKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             TTTSCEECTT--T-----CCEESSHHHHHHHHHHSSCC-
T ss_pred             CCCcCEECCC--c-----CcccCCHHHHHHHhhhhcCCC
Confidence            3555666665  5     566666666666666 55554

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.25  E-value=0.00016  Score=46.05  Aligned_cols=29  Identities=31%  Similarity=0.599  Sum_probs=20.6

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      ++|.|+.  |     ++.|.....|..|+++|+++|
T Consensus         2 k~~~C~~--C-----~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            2 KPYQCDY--C-----GRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCEECTT--T-----CCEESCHHHHHHHHHTTCCCC
T ss_pred             cCccCCC--C-----CcccCCHHHHHHHHHHhccCC
Confidence            5677777  6     777777777777777776653

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.25  E-value=0.00018  Score=47.17  Aligned_cols=31  Identities=19%  Similarity=0.491  Sum_probs=20.6

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      +||.|+++.|     ++.|.....|.+|+++|++++
T Consensus         2 k~~~C~~~~C-----~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            2 RPYSCDHPGC-----DKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CSBCCCCTTC-----CCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCcCcCCCC-----CCccCCHHHHHHHHHHccCCC
Confidence            5677772226     777777777777777776653

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.20  E-value=0.0002  Score=46.71  Aligned_cols=31  Identities=19%  Similarity=0.544  Sum_probs=22.0

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      +||.|+++.|     ++.|.....|.+|+++|+++|
T Consensus         1 kp~~C~~~~C-----~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYC-----GKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTC-----CCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCC-----CcccCCHhHHHHHHHHhcCCC
Confidence            4677762227     788888888888888887764

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.18  E-value=0.0002  Score=45.59  Aligned_cols=29  Identities=21%  Similarity=0.450  Sum_probs=20.8

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      +||.|+.  |     ++.|.....|..|+++|+++|
T Consensus         1 k~~~C~~--C-----~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPE--C-----PKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSS--S-----SCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCC--C-----CchhCCHHHHHHHHHHhcCCC
Confidence            4677777  7     777777777777777777653

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.24  E-value=6e-05  Score=47.24  Aligned_cols=24  Identities=25%  Similarity=0.688  Sum_probs=15.1

Q ss_pred             ceeecC-CCCCcCChhHHHHHHHHh
Q 008103          107 REYRCD-CGTLFSRRDSFITHRAFC  130 (577)
Q Consensus       107 Kpy~C~-Cgk~F~~~s~L~~H~r~h  130 (577)
                      |||.|+ |++.|.+++.|.+|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            456666 666666666666666654

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.12  E-value=0.00026  Score=44.92  Aligned_cols=29  Identities=31%  Similarity=0.764  Sum_probs=20.1

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      ++|.|++  |     ++.|.....|.+|+++|+++|
T Consensus         1 k~~~C~~--C-----~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEV--C-----TRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTT--T-----CCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCC--C-----CcccCCHHHHHHHHHHhcCCC
Confidence            3567777  6     777777777777777776653

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.09  E-value=0.00027  Score=44.98  Aligned_cols=28  Identities=29%  Similarity=0.583  Sum_probs=19.4

Q ss_pred             eeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103           46 VYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus        46 py~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      +|.|++  |     ++.|.....|..|+++|++++
T Consensus         2 ~~~C~~--C-----~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            2 TYQCQY--C-----EFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCSS--S-----SCCCSCSHHHHHHHHHHTSSC
T ss_pred             CccCCC--C-----CCccCCHHHHHHHHHHHccCC
Confidence            566776  6     777777777777777776654

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.07  E-value=0.00025  Score=44.93  Aligned_cols=29  Identities=28%  Similarity=0.548  Sum_probs=21.5

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      ++|.|++  |     ++.|.....|..|+++|+++|
T Consensus         1 ~~~~C~~--C-----~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRE--C-----GKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTT--T-----SCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCC--C-----CCccCChhHHHHHHHHhcCCC
Confidence            4677777  7     777777777777877777654

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.05  E-value=0.00026  Score=44.73  Aligned_cols=29  Identities=21%  Similarity=0.518  Sum_probs=19.8

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      +||.|++  |     ++.|.....|..|+++|++++
T Consensus         1 k~~~C~~--C-----~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPH--C-----DKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSS--C-----CCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCC--C-----CcccCCHHHHHHHHHHhccCC
Confidence            3567776  6     777777777777777776653

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.95  E-value=0.0011  Score=52.48  Aligned_cols=59  Identities=19%  Similarity=0.202  Sum_probs=40.9

Q ss_pred             cccc--ccccccCChHHHHHHHH-hcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhc
Q 008103            6 FICE--VCNKGFQREQNLQLHRR-GHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRK   76 (577)
Q Consensus         6 y~C~--~CgK~F~~~s~L~~H~r-~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~H   76 (577)
                      |.|.  .|++.|.+...|..|+. .|....       ......+|.|.|.+|     ++.+.....|..|++.+
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~-------~~~~~~~~~C~W~~C-----~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQD-------FKHPMEPLACNWEDC-----DFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCC-------CCCSSCCEECCCSSC-----CCEESSHHHHHHHHHHH
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcc-------cCCCCCCCEeeCCCC-----cCCCCChHHHHhhcccc
Confidence            4554  48888999988998874 664110       001224788888878     88888888888888765

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.92  E-value=0.00071  Score=53.60  Aligned_cols=58  Identities=16%  Similarity=0.303  Sum_probs=36.3

Q ss_pred             eeCCCCCccCCCCCCccCChhhHHhHh-hhccCCcccccCcCCCcccchhhhhhhccccCCceeecC---CCCCcCChhH
Q 008103           47 YLCPEPTCVHHDPSRALGDLTGIKKHY-SRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD---CGTLFSRRDS  122 (577)
Q Consensus        47 y~C~~~~C~~~~~~k~F~~~s~Lk~H~-r~HtgeKpykC~~C~K~F~sks~L~~H~r~hgeKpy~C~---Cgk~F~~~s~  122 (577)
                      +.|.|..|     ++.|.....|..|+ +.|.+.++                     ....++|.|.   |++.+.....
T Consensus         2 l~C~W~~C-----~~~f~~~~~l~~Hv~~~Hv~~~~---------------------~~~~~~~~C~W~~C~~~~~~~~~   55 (64)
T 1zw8_A            2 LKCKWKEC-----PESASSLFDLQRHLLKDHVSQDF---------------------KHPMEPLACNWEDCDFLGDDTAS   55 (64)
T ss_dssp             CCCCCTTC-----CCCCSSHHHHHHHHHHHSCCCCC---------------------CCSSCCEECCCSSCCCEESSHHH
T ss_pred             CeEeeCCC-----CCcCCCHHHHHHHHHhhccCccc---------------------CCCCCCCEeeCCCCcCCCCChHH
Confidence            56777667     88888888888887 46765441                     0011356664   6666666666


Q ss_pred             HHHHHHHh
Q 008103          123 FITHRAFC  130 (577)
Q Consensus       123 L~~H~r~h  130 (577)
                      |.+|+++.
T Consensus        56 L~~Hir~~   63 (64)
T 1zw8_A           56 IVNHINAQ   63 (64)
T ss_dssp             HHHHHHHH
T ss_pred             HHhhcccc
Confidence            66666654

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=95.94  E-value=0.00015  Score=46.48  Aligned_cols=28  Identities=32%  Similarity=0.721  Sum_probs=15.4

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccCC
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE   79 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htge   79 (577)
                      ++|.|+.  |     ++.|.....|.+|+++|+++
T Consensus         2 k~~~C~~--C-----~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIH--C-----QRQFADPGALQRHVRIHTGE   29 (30)
Confidence            4555555  5     55555555555555555543

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=95.93  E-value=0.00015  Score=46.33  Aligned_cols=27  Identities=22%  Similarity=0.498  Sum_probs=16.0

Q ss_pred             eeeCCCCCccCCCCCCccCChhhHHhHhhhccCC
Q 008103           46 VYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE   79 (577)
Q Consensus        46 py~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htge   79 (577)
                      ||.|++  |     ++.|.....|..|+++|+++
T Consensus         2 ~~~C~~--C-----~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVM--C-----GKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            455655  5     66666666666666666554

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=96.86  E-value=0.00054  Score=43.29  Aligned_cols=26  Identities=19%  Similarity=0.530  Sum_probs=14.1

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhcc
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKH   77 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Ht   77 (577)
                      ++|.|++  |     ++.|.....|.+|+++|+
T Consensus         2 k~~~C~~--C-----~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSV--C-----GKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSS--S-----CCEESCHHHHHHHHTTSC
T ss_pred             cCccCCC--C-----CcccCCHHHHHHHHHhcC
Confidence            4455555  5     555555555555555554

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=96.77  E-value=0.00081  Score=41.95  Aligned_cols=26  Identities=19%  Similarity=0.528  Sum_probs=15.4

Q ss_pred             eeeCCCCCccCCCCCCccCChhhHHhHhhhccC
Q 008103           46 VYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG   78 (577)
Q Consensus        46 py~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htg   78 (577)
                      ||+|++  |     ++.|..+..|.+|+++|++
T Consensus         1 ~~~C~~--C-----~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGL--C-----ERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSS--S-----CCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCC--C-----CCcCCCHHHHHHHHHHcCC
Confidence            355665  5     6666666666666666654

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=96.76  E-value=0.00072  Score=43.22  Aligned_cols=27  Identities=26%  Similarity=0.502  Sum_probs=17.0

Q ss_pred             eeeCCCCCccCCCCCCccCChhhHHhH-hhhccCC
Q 008103           46 VYLCPEPTCVHHDPSRALGDLTGIKKH-YSRKHGE   79 (577)
Q Consensus        46 py~C~~~~C~~~~~~k~F~~~s~Lk~H-~r~Htge   79 (577)
                      +|.|+.  |     ++.|.....|.+| +++|+++
T Consensus         2 ~~~C~~--C-----~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGL--C-----NRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTT--T-----CCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCcc--c-----CcccCChHHHHHHHHHHccCC
Confidence            566666  6     6666666666666 5666654

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=96.24  E-value=0.0018  Score=40.81  Aligned_cols=27  Identities=26%  Similarity=0.605  Sum_probs=16.3

Q ss_pred             eeeCCCCCccCCCCCCccCChhhHHhHhhhcc
Q 008103           46 VYLCPEPTCVHHDPSRALGDLTGIKKHYSRKH   77 (577)
Q Consensus        46 py~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Ht   77 (577)
                      +|.|+++.|     ++.|.....|.+|+++|+
T Consensus         2 ~~~C~~~~C-----~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENC-----GRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTT-----CEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcC-----cCccCCHHHHHHHHHHhC
Confidence            566661116     666666666666666664

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.16  E-value=0.0012  Score=59.37  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=16.9

Q ss_pred             CcccccccccccCChHHHHHHH
Q 008103            4 NRFICEVCNKGFQREQNLQLHR   25 (577)
Q Consensus         4 kpy~C~~CgK~F~~~s~L~~H~   25 (577)
                      +++.|.+|+..|.+...+..|.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~   52 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHY   52 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHH
Confidence            5677888888888877777777

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.62  E-value=0.0039  Score=58.08  Aligned_cols=77  Identities=19%  Similarity=0.486  Sum_probs=47.7

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCceeecC-CCCCcCChhH
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDS  122 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~~~s~  122 (577)
                      ....|+..+|     .+.+ ....|..|.. .=.-+++.|+.|+..+ .+..|..|... +..++..|. |+..|..+ .
T Consensus        81 l~v~C~n~GC-----~~~~-~~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~~-~  151 (170)
T 3hcs_A           81 LMVKCPNEGC-----LHKM-ELRHLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAFE-D  151 (170)
T ss_dssp             SEEECCSTTC-----CCEE-EGGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEGG-G
T ss_pred             cccCCCCCCC-----Ccee-cHhHHHHHHh-cCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCHH-H
Confidence            4456665456     4443 3445666653 2234566777777766 45567777755 777777787 87777543 4


Q ss_pred             HHHHHHHh
Q 008103          123 FITHRAFC  130 (577)
Q Consensus       123 L~~H~r~h  130 (577)
                      |..|..++
T Consensus       152 l~~H~~~~  159 (170)
T 3hcs_A          152 KEIHDQNC  159 (170)
T ss_dssp             HHHHHTTC
T ss_pred             HHhHHHhC
Confidence            67777665

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.16  E-value=0.012  Score=43.88  Aligned_cols=27  Identities=19%  Similarity=0.485  Sum_probs=23.9

Q ss_pred             ceeecC-CCCCcCChhHHHHHHHHhccc
Q 008103          107 REYRCD-CGTLFSRRDSFITHRAFCDAL  133 (577)
Q Consensus       107 Kpy~C~-Cgk~F~~~s~L~~H~r~h~~~  133 (577)
                      -+|.|+ |++.|...+.|++|++.+|+.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~   38 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCPE   38 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCTT
T ss_pred             CceeCCcccccccchHHHHhhhhhcCcc
Confidence            578999 999999999999999988663

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=94.50  E-value=0.0079  Score=53.99  Aligned_cols=28  Identities=25%  Similarity=0.393  Sum_probs=25.7

Q ss_pred             CCCCcccccccccccCChHHHHHHHHhc
Q 008103            1 MATNRFICEVCNKGFQREQNLQLHRRGH   28 (577)
Q Consensus         1 t~~kpy~C~~CgK~F~~~s~L~~H~r~H   28 (577)
                      |+++||.|.+|+|.|.+...|..|+++.
T Consensus        46 tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           46 PGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             GGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             CCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            4689999999999999999999998775

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=94.28  E-value=0.011  Score=53.00  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=14.8

Q ss_pred             cCCceeecC-CCCCcCChhHHHHHHH
Q 008103          104 CGTREYRCD-CGTLFSRRDSFITHRA  128 (577)
Q Consensus       104 hgeKpy~C~-Cgk~F~~~s~L~~H~r  128 (577)
                      +++++|.|. |+|.|.+...|..|++
T Consensus        46 tGekpfyC~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           46 PGGGLHRCLACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             GGGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             CCCcceEcccCcchhCCHHHHHHHHh
Confidence            455566665 6666666666666654

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=92.80  E-value=0.026  Score=50.59  Aligned_cols=74  Identities=18%  Similarity=0.277  Sum_probs=52.2

Q ss_pred             CceeeCCCCCccCCCCCCccCChhhHHhHh--hhccCC-cccccCcC------CCcccchhhhhhhccc-cCCceeecC-
Q 008103           44 RKVYLCPEPTCVHHDPSRALGDLTGIKKHY--SRKHGE-KKWKCEKC------SKRYAVQSDWKAHSKT-CGTREYRCD-  112 (577)
Q Consensus        44 ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~--r~Htge-KpykC~~C------~K~F~sks~L~~H~r~-hgeKpy~C~-  112 (577)
                      .+++.|..  |     ...|.+...+..|.  +.|... +.|.+..+      ++.+...    .+... ...+.|.|+ 
T Consensus        30 ~~~~~C~~--C-----~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~C~~   98 (127)
T 1zu1_A           30 FSDTQCKV--C-----SAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAA----PAEISDGEDRSKCCPV   98 (127)
T ss_dssp             BCSSEETT--T-----TEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCC----SSCCSSCCCTTTEETT
T ss_pred             CCCCcCcC--C-----CCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCC----ccccccCCCCCeEcCC
Confidence            36789999  8     99999999999999  566543 45555211      2222211    12223 456789999 


Q ss_pred             CCCCcCChhHHHHHHH
Q 008103          113 CGTLFSRRDSFITHRA  128 (577)
Q Consensus       113 Cgk~F~~~s~L~~H~r  128 (577)
                      |.+.|.....|..|..
T Consensus        99 C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           99 CNMTFSSPVVAESHYI  114 (127)
T ss_dssp             TTEECSSHHHHHHHHT
T ss_pred             CCCEeCCHHHHHHHHC
Confidence            9999999999999985

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.25  E-value=0.11  Score=38.63  Aligned_cols=24  Identities=33%  Similarity=0.497  Sum_probs=22.3

Q ss_pred             CcccccccccccCChHHHHHHHHh
Q 008103            4 NRFICEVCNKGFQREQNLQLHRRG   27 (577)
Q Consensus         4 kpy~C~~CgK~F~~~s~L~~H~r~   27 (577)
                      .+|.|+.|++.|.....|+.||+-
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            579999999999999999999974

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=88.17  E-value=0.45  Score=43.92  Aligned_cols=57  Identities=21%  Similarity=0.404  Sum_probs=42.9

Q ss_pred             CceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc-cCCcee
Q 008103           44 RKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREY  109 (577)
Q Consensus        44 ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~-hgeKpy  109 (577)
                      -++..|+.  |     ++.+ .+..|..|....-..++..|+.|+..+.. ..|+.|..+ .++.++
T Consensus       108 ~~~v~C~~--C-----~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          108 FALMDCPQ--C-----QRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQNCPLALEH  165 (170)
T ss_dssp             TSEEECTT--T-----CCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTTCCC----
T ss_pred             ceeeECCC--C-----ChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHhCcChhhh
Confidence            35678886  8     7766 67789999988888888999999987754 568899988 776654

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=82.77  E-value=0.53  Score=37.58  Aligned_cols=47  Identities=28%  Similarity=0.685  Sum_probs=30.3

Q ss_pred             Cccccc-CcCCCcccchhhhhhhccc-cCCceeecC-CCCCcCChhHHHHHH
Q 008103           79 EKKWKC-EKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHR  127 (577)
Q Consensus        79 eKpykC-~~C~K~F~sks~L~~H~r~-hgeKpy~C~-Cgk~F~~~s~L~~H~  127 (577)
                      -++..| ..|+..+.+ ..|..|+.. +..++..|. |...|.+. .|..|.
T Consensus        14 ~~~v~C~~~C~~~v~r-~~l~~H~~~~C~~r~v~C~~C~~~~~~~-~l~~H~   63 (76)
T 2yuc_A           14 FNVIPCPNRCPMKLSR-RDLPAHLQHDCPKRRLKCEFCGCDFSGE-AYESHE   63 (76)
T ss_dssp             CSCCBCTTCCSCBCCS-SSSTTTTTTSCTTSCCCCSSSCCCCCHH-HHHHTT
T ss_pred             CcccCCCccccHHhhH-hHHHhhCHhhCCCcceECCCCCCccCHH-HHHHHH
Confidence            345667 467766643 567777774 667777787 87777543 456654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	577
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.004
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.004

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (77), Expect = 0.004
 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 79  EKKWKCEKCSKRYAVQSDWKAHSKTCGTRE--YRCD 112
            K + C+ C K ++       H K   T E  ++C 
Sbjct: 3   GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (76), Expect = 0.004
 Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 3/51 (5%)

Query: 79  EKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRC--DCGTLFSRRDSFITHR 127
           +K + C+ C K +  +S    H              CG  F  +   + H 
Sbjct: 1   DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	577
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.29
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.27
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.81
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.73
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.7
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.67
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.67
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.63
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.63
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.58
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.55
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.52
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.5
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.48
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.42
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.41
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.37
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.33
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.32
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.3
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.27
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.25
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.24
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.24
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.17
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.14
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.14
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.13
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.1
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.07
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.01
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.01
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.0
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.0
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.98
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.91
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	97.9
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.86
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	97.86
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.74
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.73
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.73
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.68
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.27
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.27
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.95
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.85
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.84
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.8
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.64
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.63
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.58
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.55
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.53
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.52
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.37
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.36
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.27
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.25
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.22
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.97
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.94
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	95.9
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.85
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	95.78
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.74
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.71
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	95.6
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	95.59
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.58
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.47
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	95.42
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	95.37
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.13
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.04
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	94.8
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.68
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.55
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	94.38
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.06
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	94.05
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	93.92
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	92.97
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	92.9
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	92.85
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	92.23
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	91.71
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	91.49
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	91.45
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	91.25
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	90.74
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	89.26
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	89.25
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	88.98
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	88.04
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	87.57
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	87.0
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	86.99
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	85.27
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	83.62
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	83.02
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	81.19

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=7.6e-13  Score=100.16  Aligned_cols=53  Identities=19%  Similarity=0.385  Sum_probs=32.8

Q ss_pred             CCcccccccccccCChHHHHHHHHhcCCCccccccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhc
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRK   76 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~H   76 (577)
                      ||||+|+ |+|.|..+..|+.|+++|+             +++||.|++  |     ++.|.....|.+|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht-------------~ekpy~C~~--C-----~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHL-------------GLRPYGCGV--C-----GKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHS-------------CCCSEECTT--T-----SCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccc-------------cccCCcCCC--c-----CCEecCHHHHHHHHhcC
Confidence            4566663 6666666666666666664             556666666  5     66666666666666654

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=8.4e-13  Score=99.90  Aligned_cols=52  Identities=23%  Similarity=0.600  Sum_probs=36.3

Q ss_pred             CceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCcCCCcccchhhhhhhccc
Q 008103           44 RKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        44 ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~  103 (577)
                      ||||+| .  |     ++.|..+..|.+|+++|+++|||+|++|++.|.....|..|+++
T Consensus         1 EK~y~C-~--C-----gk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~   52 (53)
T d2csha1           1 DKLYPC-Q--C-----GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI   52 (53)
T ss_dssp             CCCEEC-T--T-----SCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTT
T ss_pred             CcCCCC-C--C-----CCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhc
Confidence            466777 4  6     77777777777777777777777777777777777777777664

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=9.9e-10  Score=77.71  Aligned_cols=37  Identities=30%  Similarity=0.646  Sum_probs=33.8

Q ss_pred             CCCcccccccccccCChHHHHHHHH-hcCCCccccccccccccCceeeCCC
Q 008103            2 ATNRFICEVCNKGFQREQNLQLHRR-GHNLPWKLKQKTTKEVKRKVYLCPE   51 (577)
Q Consensus         2 ~~kpy~C~~CgK~F~~~s~L~~H~r-~H~~p~~~~~h~~~~~~ekpy~C~~   51 (577)
                      -+|||+|++|+|.|....+|.+|++ +|+             +++||+|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht-------------~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHT-------------SERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSC-------------CCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccC-------------CCcCcCCcC
Confidence            5899999999999999999999976 686             999999974

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.3e-09  Score=76.79  Aligned_cols=33  Identities=24%  Similarity=0.647  Sum_probs=22.2

Q ss_pred             hHhhhccCCcccccCcCCCcccchhhhhhhccc
Q 008103           71 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        71 ~H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~  103 (577)
                      +|+++|++||||+|++|+|.|...+.|..|+++
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~   34 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT   34 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTT
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCcc
Confidence            466666666666666666666666666666666

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=2.2e-09  Score=75.16  Aligned_cols=33  Identities=18%  Similarity=0.452  Sum_probs=23.3

Q ss_pred             HhhhccCCcccccCcCCCcccchhhhhhhcccc
Q 008103           72 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTC  104 (577)
Q Consensus        72 H~r~HtgeKpykC~~C~K~F~sks~L~~H~r~h  104 (577)
                      |.|+|++||||+|++|+|.|.++..|++|+++|
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            566777777777777777777777777776653

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=4.4e-09  Score=74.30  Aligned_cols=37  Identities=22%  Similarity=0.546  Sum_probs=31.3

Q ss_pred             cCceeeCCCCCccCCCCCCccCChhhHHhHhh-hccCCcccccCc
Q 008103           43 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYS-RKHGEKKWKCEK   86 (577)
Q Consensus        43 ~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r-~HtgeKpykC~~   86 (577)
                      .+|||+|++  |     +|.|.....|++|++ +|++||||+|++
T Consensus         2 ~~Kpy~C~~--C-----gk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQS--C-----GKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSS--S-----CCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCC--C-----CCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            468899988  8     899999999999975 799999999874

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=4.3e-09  Score=73.11  Aligned_cols=36  Identities=25%  Similarity=0.661  Sum_probs=33.6

Q ss_pred             eeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccccCc
Q 008103           46 VYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEK   86 (577)
Q Consensus        46 py~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpykC~~   86 (577)
                      .|.|++++|     +|+|..+..|++|+++|++||||+|++
T Consensus         1 tf~C~~~~C-----~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           1 SFSCPEPAC-----GKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             CEECSCTTT-----CCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             CeECCCCCC-----CCeeCChhHhccccCeeCCCCCEeCCC
Confidence            388999999     999999999999999999999999974

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=5.8e-09  Score=71.94  Aligned_cols=29  Identities=24%  Similarity=0.578  Sum_probs=28.1

Q ss_pred             CCCCcccccccccccCChHHHHHHHHhcC
Q 008103            1 MATNRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         1 t~~kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      |+||||+|++|+|.|.++.+|++|+++|+
T Consensus         3 TGekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           3 SGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCccccCCCCCCcccChHHHHHHccccC
Confidence            68999999999999999999999999997

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.4e-09  Score=73.08  Aligned_cols=30  Identities=27%  Similarity=0.553  Sum_probs=19.6

Q ss_pred             hhccCCcccccCcCCCcccchhhhhhhccc
Q 008103           74 SRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        74 r~HtgeKpykC~~C~K~F~sks~L~~H~r~  103 (577)
                      |+|++||||+|++|+|.|..+..|+.|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~   30 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKR   30 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcc
Confidence            456666666666666666666666666666

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1e-08  Score=69.75  Aligned_cols=29  Identities=31%  Similarity=0.559  Sum_probs=28.1

Q ss_pred             CCCCcccccccccccCChHHHHHHHHhcC
Q 008103            1 MATNRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         1 t~~kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      |++|||+|.+|+|.|..+..|..|+++|+
T Consensus         3 Tgekpy~C~~Cgk~F~~~~~L~~H~r~Ht   31 (33)
T d1x6ea1           3 SGEKPYGCVECGKAFSRSSILVQHQRVHT   31 (33)
T ss_dssp             TTCCCEECSSSCCEESSHHHHHHHHHGGG
T ss_pred             CCCCCeeCCCCCCEeCchHHhHhhccccC
Confidence            68999999999999999999999999997

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.1e-08  Score=69.69  Aligned_cols=28  Identities=29%  Similarity=0.603  Sum_probs=14.0

Q ss_pred             ccCCcccccCcCCCcccchhhhhhhccc
Q 008103           76 KHGEKKWKCEKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        76 HtgeKpykC~~C~K~F~sks~L~~H~r~  103 (577)
                      |++||||+|.+|+|.|..+..|+.|+++
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~   29 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRV   29 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHG
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccc
Confidence            4445555555555555555555544444

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1e-08  Score=71.17  Aligned_cols=30  Identities=27%  Similarity=0.543  Sum_probs=20.1

Q ss_pred             hhccCCcccccCcCCCcccchhhhhhhccc
Q 008103           74 SRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        74 r~HtgeKpykC~~C~K~F~sks~L~~H~r~  103 (577)
                      |+|++||||+|++|+|.|.++.+|++|++.
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~   30 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQ   30 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHH
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHccc
Confidence            456677777777777777666666666554

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=1.4e-08  Score=66.58  Aligned_cols=27  Identities=33%  Similarity=0.778  Sum_probs=26.1

Q ss_pred             CCcccccccccccCChHHHHHHHHhcC
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      ||||+|++|+|.|.++.+|.+|+++|+
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCcc
Confidence            799999999999999999999999995

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=2.1e-08  Score=69.13  Aligned_cols=27  Identities=19%  Similarity=0.567  Sum_probs=12.7

Q ss_pred             cCCcccccCcCCCcccchhhhhhhccc
Q 008103           77 HGEKKWKCEKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        77 tgeKpykC~~C~K~F~sks~L~~H~r~  103 (577)
                      ++||||+|++|+|.|.++.+|++|+++
T Consensus         3 TGekPy~C~~C~k~F~~~~~L~~H~r~   29 (35)
T d1srka_           3 SGKRPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCccccCCCCCCcccChHHHHHHccc
Confidence            444444444444444444444444444

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.7e-08  Score=63.86  Aligned_cols=26  Identities=31%  Similarity=0.626  Sum_probs=24.8

Q ss_pred             CcccccccccccCChHHHHHHHHhcC
Q 008103            4 NRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         4 kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      |||+|.+|||.|..++.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            79999999999999999999999983

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.41  E-value=6.4e-08  Score=63.87  Aligned_cols=26  Identities=42%  Similarity=1.013  Sum_probs=25.4

Q ss_pred             CcccccccccccCChHHHHHHHHhcC
Q 008103            4 NRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         4 kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      |||+|++|+|.|.++..|++|+++|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HT   26 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTT
T ss_pred             CcCCCCCCCCCCCCchHcccccCccc
Confidence            79999999999999999999999997

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=9.3e-08  Score=67.00  Aligned_cols=37  Identities=24%  Similarity=0.580  Sum_probs=33.6

Q ss_pred             ccccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCC
Q 008103           36 QKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE   79 (577)
Q Consensus        36 ~h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htge   79 (577)
                      +|+++|.+++||+|++  |     +|.|...+.|.+|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~--C-----gK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDE--C-----GKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSS--S-----CCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCC--C-----CceeeCHHHHHHhCccCCCC
Confidence            3556677999999999  9     99999999999999999987

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.2e-07  Score=63.50  Aligned_cols=31  Identities=19%  Similarity=0.544  Sum_probs=28.8

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      +||.|++++|     +|.|....+|++|+++|++||
T Consensus         1 kpf~C~~~~C-----~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYC-----GKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTC-----CCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCC-----CcCcCChhHhhhhcCcccccC
Confidence            6899999889     999999999999999999986

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.1e-07  Score=62.62  Aligned_cols=26  Identities=35%  Similarity=0.751  Sum_probs=25.3

Q ss_pred             CcccccccccccCChHHHHHHHHhcC
Q 008103            4 NRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         4 kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      |||+|++|+|.|.++++|.+|+++|+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Ht   26 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQ   26 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGG
T ss_pred             CCEECCcCCCeecchHHhhhhcCccC
Confidence            79999999999999999999999997

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=1.2e-07  Score=69.45  Aligned_cols=35  Identities=20%  Similarity=0.479  Sum_probs=24.3

Q ss_pred             cccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103           41 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus        41 ~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      +.+++||+|++++|     +|.|..++.|++|+++|++||
T Consensus        13 h~gekpy~C~~~~C-----~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          13 EMPDKTFECLFPGC-----TKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EETTTEEECCCTTC-----CCEECSSSSHHHHHHHHTTTC
T ss_pred             ccCCCCeECCcCCC-----CccccCchHHHhhcccccCCC
Confidence            55677777766666     777777777777777777664

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.27  E-value=5.5e-08  Score=71.39  Aligned_cols=39  Identities=23%  Similarity=0.450  Sum_probs=31.1

Q ss_pred             hHHhHhhhccCCcccccCc--CCCcccchhhhhhhccc-cCCc
Q 008103           68 GIKKHYSRKHGEKKWKCEK--CSKRYAVQSDWKAHSKT-CGTR  107 (577)
Q Consensus        68 ~Lk~H~r~HtgeKpykC~~--C~K~F~sks~L~~H~r~-hgeK  107 (577)
                      .|.+|++ |++||||+|++  |+|.|.++++|+.|+++ ++||
T Consensus         6 ~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            4566774 88888888877  88888888888888888 6664

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.4e-07  Score=65.33  Aligned_cols=33  Identities=30%  Similarity=0.689  Sum_probs=30.6

Q ss_pred             ccccc--cccccCChHHHHHHHHhcCCCccccccccccccCceeeCCC
Q 008103            6 FICEV--CNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE   51 (577)
Q Consensus         6 y~C~~--CgK~F~~~s~L~~H~r~H~~p~~~~~h~~~~~~ekpy~C~~   51 (577)
                      |+|++  |+|.|.++..|++|+++|+             +++||+|++
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Ht-------------gekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHS-------------DTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHH-------------TSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeC-------------CCCCEeCCC
Confidence            78987  9999999999999999996             999999974

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.4e-07  Score=61.47  Aligned_cols=30  Identities=27%  Similarity=0.500  Sum_probs=27.8

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccCC
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE   79 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htge   79 (577)
                      |||+|++++|     +|+|..++.|++|+++|++|
T Consensus         1 kp~~C~~~gC-----gk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGC-----RKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTC-----CCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCC-----CceECChhHhhhhcCcCcCC
Confidence            6899999999     99999999999999999986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2e-07  Score=61.89  Aligned_cols=30  Identities=17%  Similarity=0.391  Sum_probs=28.0

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccCC
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE   79 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htge   79 (577)
                      |||+|++++|     +|+|...+.|++|+++|++|
T Consensus         1 kp~~C~~~gC-----gk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGC-----GKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTC-----CCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCC-----CceECcHHHcCccccccCCC
Confidence            6899999999     99999999999999999986

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.17  E-value=4.3e-07  Score=59.82  Aligned_cols=29  Identities=31%  Similarity=0.764  Sum_probs=23.3

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      +||.|++  |     +|.|..+..|++|+++|++||
T Consensus         1 kp~~C~~--C-----~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEV--C-----TRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTT--T-----CCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCC--C-----CCCCCCchHcccccCcccCCC
Confidence            5788888  7     888888888888888888875

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=4.9e-07  Score=57.87  Aligned_cols=24  Identities=33%  Similarity=0.863  Sum_probs=20.6

Q ss_pred             ceeecC-CCCCcCChhHHHHHHHHh
Q 008103          107 REYRCD-CGTLFSRRDSFITHRAFC  130 (577)
Q Consensus       107 Kpy~C~-Cgk~F~~~s~L~~H~r~h  130 (577)
                      |||+|. |+|.|.+++.|.+|+|+|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            688888 888888888888888887

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=5.3e-07  Score=62.33  Aligned_cols=35  Identities=20%  Similarity=0.503  Sum_probs=31.5

Q ss_pred             cccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103           39 TKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus        39 ~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      |+|++++||+|.+  |     ++.|..+..|++|+++|+++.
T Consensus         1 R~HTgekPy~C~~--C-----~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKPYACSH--C-----DKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCCCEECSS--S-----SCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCEECCC--C-----CCCcCCHhHHHHhCcccCCCC
Confidence            3567999999999  9     999999999999999998763

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=6.9e-07  Score=62.08  Aligned_cols=35  Identities=23%  Similarity=0.432  Sum_probs=31.6

Q ss_pred             cccccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccC
Q 008103           37 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG   78 (577)
Q Consensus        37 h~~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htg   78 (577)
                      |.|.|++||||+|++  |     +|.|..+..|++|+++|..
T Consensus         2 h~R~HTgeKPy~C~~--C-----~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPD--C-----DRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTT--T-----CCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCC--C-----CCEecCHHHHHHHHhcCcC
Confidence            456777999999999  9     9999999999999999964

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=8.1e-07  Score=58.87  Aligned_cols=26  Identities=35%  Similarity=0.729  Sum_probs=25.1

Q ss_pred             Ccccccc--cccccCChHHHHHHHHhcC
Q 008103            4 NRFICEV--CNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         4 kpy~C~~--CgK~F~~~s~L~~H~r~H~   29 (577)
                      |||+|++  |+|.|.++.+|++|+++|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~Ht   28 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHT   28 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCc
Confidence            7999998  9999999999999999997

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=8.6e-07  Score=58.31  Aligned_cols=29  Identities=28%  Similarity=0.629  Sum_probs=22.6

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      |||.|++  |     +|.|..++.|.+|+++|++||
T Consensus         1 Kpy~C~~--C-----~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPE--C-----PKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTT--T-----TCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCc--C-----CCeecchHHhhhhcCccCCcC
Confidence            5777877  7     788888888888888887775

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=9.9e-07  Score=57.54  Aligned_cols=28  Identities=21%  Similarity=0.503  Sum_probs=18.5

Q ss_pred             CceeeCCCCCccCCCCCCccCChhhHHhHhhhccC
Q 008103           44 RKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG   78 (577)
Q Consensus        44 ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htg   78 (577)
                      ||||+|++  |     +|.|..++.|++|+++|+|
T Consensus         1 EKPy~C~~--C-----~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRI--C-----MRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTT--T-----CCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCC--C-----cCEecccccccccCCCccC
Confidence            46666666  6     6666666666666666654

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.01  E-value=1.6e-06  Score=58.31  Aligned_cols=31  Identities=19%  Similarity=0.492  Sum_probs=26.6

Q ss_pred             CceeeCCCCCccCCCCCCccCChhhHHhHhhhccCC
Q 008103           44 RKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE   79 (577)
Q Consensus        44 ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htge   79 (577)
                      |+||.|++++|     +|.|....+|++|+++|+.+
T Consensus         1 ErP~~C~~pgC-----~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGC-----DKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTC-----CCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCC-----CCeeCCHHHHHHHhhhccCC
Confidence            57899999888     89999999999999998753

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=8.4e-07  Score=58.82  Aligned_cols=26  Identities=38%  Similarity=0.698  Sum_probs=24.9

Q ss_pred             Ccccccc--cccccCChHHHHHHHHhcC
Q 008103            4 NRFICEV--CNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         4 kpy~C~~--CgK~F~~~s~L~~H~r~H~   29 (577)
                      |||+|++  |+|.|.++.+|++|+++|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HT   28 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHT   28 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCCceECcHHHcCccccccC
Confidence            7999987  9999999999999999996

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=1.1e-06  Score=57.77  Aligned_cols=29  Identities=24%  Similarity=0.663  Sum_probs=26.7

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccC
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG   78 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htg   78 (577)
                      |||+|++++|     +|+|...+.|++|+++|+|
T Consensus         1 Kp~~C~~~gC-----~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESC-----DRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTC-----CCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCC-----CcEECchhHhhhhcCccCC
Confidence            6899999999     9999999999999999985

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.98  E-value=1.4e-06  Score=58.48  Aligned_cols=27  Identities=30%  Similarity=0.805  Sum_probs=26.0

Q ss_pred             CCcccccc--cccccCChHHHHHHHHhcC
Q 008103            3 TNRFICEV--CNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         3 ~kpy~C~~--CgK~F~~~s~L~~H~r~H~   29 (577)
                      ||||.|++  |+|.|.+..+|++|+++|+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            79999988  9999999999999999997

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.7e-06  Score=56.33  Aligned_cols=28  Identities=25%  Similarity=0.616  Sum_probs=25.2

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhcc
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKH   77 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Ht   77 (577)
                      +||+|++++|     +|.|....+|++|+++|+
T Consensus         1 rPf~C~~~gC-----~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGC-----NKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTC-----CCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCc-----CCcCCCHHHHHHHHhhcc
Confidence            5899999999     999999999999999885

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.7e-06  Score=58.64  Aligned_cols=34  Identities=26%  Similarity=0.384  Sum_probs=29.2

Q ss_pred             cccccCceeeCCCCCccCCCCCCccCChhhHHhHhhhccCC
Q 008103           39 TKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE   79 (577)
Q Consensus        39 ~~~~~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htge   79 (577)
                      ++|++|+||+|++  |     +|.|..+..|++|++.++.+
T Consensus         1 R~HTgekP~~C~~--C-----~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYI--C-----HARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTT--T-----CCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCC--C-----cccccchHHHHHHcccccCC
Confidence            3567999999999  9     99999999999998765543

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=1.7e-06  Score=56.28  Aligned_cols=26  Identities=35%  Similarity=0.741  Sum_probs=24.6

Q ss_pred             Ccccccc--cccccCChHHHHHHHHhcC
Q 008103            4 NRFICEV--CNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         4 kpy~C~~--CgK~F~~~s~L~~H~r~H~   29 (577)
                      |||+|++  |+|.|.+..+|++|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            7999988  9999999999999999984

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=3.7e-06  Score=56.06  Aligned_cols=26  Identities=42%  Similarity=0.901  Sum_probs=24.5

Q ss_pred             Cccccc--ccccccCChHHHHHHHHhcC
Q 008103            4 NRFICE--VCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         4 kpy~C~--~CgK~F~~~s~L~~H~r~H~   29 (577)
                      |||+|+  .|+|.|.+..+|++|+++|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Ht   28 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccc
Confidence            799996  59999999999999999997

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.74  E-value=3.1e-06  Score=55.56  Aligned_cols=26  Identities=35%  Similarity=0.765  Sum_probs=24.6

Q ss_pred             Ccccccc--cccccCChHHHHHHHHhcC
Q 008103            4 NRFICEV--CNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         4 kpy~C~~--CgK~F~~~s~L~~H~r~H~   29 (577)
                      |||+|++  |+|.|.+..+|++|+++|+
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccC
Confidence            7999988  9999999999999999995

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=6.2e-06  Score=52.33  Aligned_cols=25  Identities=32%  Similarity=0.743  Sum_probs=20.6

Q ss_pred             CceeecC-CCCCcCChhHHHHHHHHh
Q 008103          106 TREYRCD-CGTLFSRRDSFITHRAFC  130 (577)
Q Consensus       106 eKpy~C~-Cgk~F~~~s~L~~H~r~h  130 (577)
                      ||||.|+ |++.|.+.++.++|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            5788888 888888888888888777

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=6.8e-06  Score=50.63  Aligned_cols=25  Identities=44%  Similarity=0.813  Sum_probs=23.8

Q ss_pred             cccccccccccCChHHHHHHHHhcC
Q 008103            5 RFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         5 py~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      |.+|++|+|.|.++..|+.|+|.|+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            6899999999999999999999986

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.68  E-value=8.1e-06  Score=51.79  Aligned_cols=27  Identities=26%  Similarity=0.672  Sum_probs=25.7

Q ss_pred             CCcccccccccccCChHHHHHHHHhcC
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      ||||.|++|++.|.+....++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            799999999999999999999999984

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=5.5e-05  Score=48.65  Aligned_cols=27  Identities=30%  Similarity=0.768  Sum_probs=25.9

Q ss_pred             CCcccccccccccCChHHHHHHHHhcC
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      ||||.|++|...|+++..+..|.+.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshd   27 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHD   27 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHS
T ss_pred             CCCcccchHHHHhhccccceEeeeccc
Confidence            699999999999999999999999996

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=5.3e-05  Score=49.81  Aligned_cols=27  Identities=30%  Similarity=0.646  Sum_probs=24.4

Q ss_pred             CCcccccccccccCChHHHHHHHHhcC
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      .|...|++|+|.|.+...|.+|...|.
T Consensus         3 rk~~~ce~cgk~frdvyhlnrhklshs   29 (35)
T d2epra1           3 RKQVACEICGKIFRDVYHLNRHKLSHS   29 (35)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSC
T ss_pred             chhhhHHHHHHHHHHHHHHHhhhcccC
Confidence            356789999999999999999999997

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00021  Score=45.81  Aligned_cols=25  Identities=20%  Similarity=0.506  Sum_probs=21.7

Q ss_pred             ceeecC---CCCCcCChhHHHHHHHHhc
Q 008103          107 REYRCD---CGTLFSRRDSFITHRAFCD  131 (577)
Q Consensus       107 Kpy~C~---Cgk~F~~~s~L~~H~r~h~  131 (577)
                      |||.|.   |.|.|...++|++|++.+|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            689997   9999999999999998764

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00023  Score=46.70  Aligned_cols=32  Identities=25%  Similarity=0.532  Sum_probs=26.8

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCcccc
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWK   83 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeKpyk   83 (577)
                      +...|+.  |     +|.|.+...|.+|...|++||||.
T Consensus         4 k~~~ce~--c-----gk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           4 KQVACEI--C-----GKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CSEEETT--T-----TEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhhHHH--H-----HHHHHHHHHHHhhhcccCCCCCCC
Confidence            4567888  8     899999999999999999998873

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.0003  Score=45.06  Aligned_cols=29  Identities=34%  Similarity=0.785  Sum_probs=25.1

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccC
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG   78 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htg   78 (577)
                      |||.|..++|     .|.|.+.+.|++|++.++|
T Consensus         1 KPY~Ck~~gC-----~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGC-----TKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTT-----CCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCC-----CcccCCHHHHHHHHHhhCC
Confidence            5899999888     9999999999999987654

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00027  Score=45.36  Aligned_cols=27  Identities=33%  Similarity=0.698  Sum_probs=18.6

Q ss_pred             CceeecC-CCCCcCChhHHHHHHHHhcc
Q 008103          106 TREYRCD-CGTLFSRRDSFITHRAFCDA  132 (577)
Q Consensus       106 eKpy~C~-Cgk~F~~~s~L~~H~r~h~~  132 (577)
                      ||||.|+ |..+|.+++.+..|.|.|..
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            4677777 77777777777777776643

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00048  Score=45.83  Aligned_cols=33  Identities=24%  Similarity=0.393  Sum_probs=28.7

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccCC
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE   79 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htge   79 (577)
                      |.|.|.|.+|  ...++.|..+..|..|+|+|++|
T Consensus         1 k~y~C~W~~C--~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           1 KEFVCHWGGC--SRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             SCCCCCBTTC--TTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCeEEECCCC--CCCCCcchhHHHHHHHHhhcCCC
Confidence            4589999888  56678899999999999999986

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00043  Score=43.29  Aligned_cols=26  Identities=27%  Similarity=0.583  Sum_probs=23.8

Q ss_pred             CcccccccccccCChHHHHHHHHhcC
Q 008103            4 NRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         4 kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      |-..|.+|+|.|...+.|++|+.+|+
T Consensus         1 r~hvc~ecgkaf~essklkrh~lvht   26 (28)
T d1ubdc2           1 RVHVCAECGKAFVESSKLKRHQLVHT   26 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHGGGTS
T ss_pred             CcchHHHHhHHHHHHHHHHHHhhccc
Confidence            34689999999999999999999997

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00058  Score=41.88  Aligned_cols=22  Identities=32%  Similarity=0.687  Sum_probs=11.4

Q ss_pred             cccCcCCCcccchhhhhhhccc
Q 008103           82 WKCEKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        82 ykC~~C~K~F~sks~L~~H~r~  103 (577)
                      ++|++|+|.|.++..|+.|+|.
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~   23 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRC   23 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGG
T ss_pred             CccchhhhHhcchhHHHHHhhc
Confidence            4455555555555555555544

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00071  Score=46.70  Aligned_cols=27  Identities=41%  Similarity=0.901  Sum_probs=23.9

Q ss_pred             cCCceeecC-CCCCcCChhHHHHHHHHh
Q 008103          104 CGTREYRCD-CGTLFSRRDSFITHRAFC  130 (577)
Q Consensus       104 hgeKpy~C~-Cgk~F~~~s~L~~H~r~h  130 (577)
                      ++.|||.|. |+|.|..++++.+|+..|
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~C   28 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTSC   28 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhhh
Confidence            467999999 999999999999998765

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00064  Score=42.36  Aligned_cols=27  Identities=22%  Similarity=0.491  Sum_probs=25.3

Q ss_pred             CCcccccccccccCChHHHHHHHHhcC
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      .|||+|..|...-.+.+.|..|+|+|.
T Consensus         1 vkp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           1 VKPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCCcccccccchhcchhhHhhhhhccc
Confidence            389999999999999999999999995

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.52  E-value=0.00066  Score=42.75  Aligned_cols=27  Identities=22%  Similarity=0.500  Sum_probs=24.4

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhc
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRK   76 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~H   76 (577)
                      .||+|+..+|     ++.|...+.|++|.++|
T Consensus         2 ~py~c~hegc-----dk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGC-----DKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTC-----CCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCc-----cccccCHHHHhhhhhcc
Confidence            5899999888     99999999999999887

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.37  E-value=0.00095  Score=41.99  Aligned_cols=24  Identities=25%  Similarity=0.510  Sum_probs=21.0

Q ss_pred             ceeecC---CCCCcCChhHHHHHHHHh
Q 008103          107 REYRCD---CGTLFSRRDSFITHRAFC  130 (577)
Q Consensus       107 Kpy~C~---Cgk~F~~~s~L~~H~r~h  130 (577)
                      .||+|.   |++.|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            478896   999999999999998887

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.00082  Score=42.19  Aligned_cols=27  Identities=26%  Similarity=0.628  Sum_probs=25.8

Q ss_pred             CCcccccccccccCChHHHHHHHHhcC
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      ||||+|..|...-++.+.|..|+|.|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~ht   27 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHT   27 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCC
T ss_pred             CCcceeeecccccCCchheEEeeeccc
Confidence            699999999999999999999999996

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.27  E-value=0.00096  Score=42.17  Aligned_cols=30  Identities=27%  Similarity=0.596  Sum_probs=27.6

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccCC
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE   79 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htge   79 (577)
                      +||.|.+.+|     .|.|.....|.+|..+|++|
T Consensus         1 ~pfpc~~egc-----~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGC-----EKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSC-----CCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccc-----cccchhhhhhhhhhccccCC
Confidence            5899999999     99999999999999999885

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.25  E-value=0.001  Score=40.38  Aligned_cols=24  Identities=29%  Similarity=0.773  Sum_probs=22.7

Q ss_pred             ccccccccccCChHHHHHHHHhcC
Q 008103            6 FICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         6 y~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      |+|..|.+.|..++.|.+|+++|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            799999999999999999999983

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0014  Score=41.23  Aligned_cols=27  Identities=26%  Similarity=0.535  Sum_probs=24.5

Q ss_pred             eeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103           47 YLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus        47 y~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      |.|+.  |     +......+-|++|+|.|++|+
T Consensus         2 YvC~~--C-----g~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEE--C-----GIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTT--T-----CCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccc--c-----CcccCCHHHHHHHHHHhcCCC
Confidence            78999  8     999999999999999999875

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0019  Score=40.18  Aligned_cols=24  Identities=21%  Similarity=0.506  Sum_probs=20.0

Q ss_pred             ceeecC-CCCCcCChhHHHHHHHHh
Q 008103          107 REYRCD-CGTLFSRRDSFITHRAFC  130 (577)
Q Consensus       107 Kpy~C~-Cgk~F~~~s~L~~H~r~h  130 (577)
                      |||+|. |.+.-...++|.+|+|+|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            688888 888888888888888877

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.94  E-value=0.002  Score=40.58  Aligned_cols=27  Identities=37%  Similarity=0.797  Sum_probs=25.2

Q ss_pred             CCcccccccccccCChHHHHHHHHhcC
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      |.-|.|.+|.+.|+++-.|+.|+..|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvsht   28 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHT   28 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeeccc
Confidence            567999999999999999999999986

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.003  Score=39.73  Aligned_cols=25  Identities=32%  Similarity=0.671  Sum_probs=23.9

Q ss_pred             cccccccccccCChHHHHHHHHhcC
Q 008103            5 RFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         5 py~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      .|.|+.|+......+.|+.|+|.|+
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT   25 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHT   25 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS
T ss_pred             CccccccCcccCCHHHHHHHHHHhc
Confidence            4899999999999999999999997

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0025  Score=39.98  Aligned_cols=29  Identities=17%  Similarity=0.453  Sum_probs=20.4

Q ss_pred             CceeeCCCCCccCCCCCCccCChhhHHhHhhhccCC
Q 008103           44 RKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE   79 (577)
Q Consensus        44 ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htge   79 (577)
                      ++||+|..  |     ...-...+.|..|+|.|+++
T Consensus         1 erpfkcql--c-----sy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQI--C-----PYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSS--S-----SCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeee--c-----ccccCCchheEEeeecccCc
Confidence            46777777  6     66667777777777777763

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.003  Score=39.36  Aligned_cols=27  Identities=33%  Similarity=0.673  Sum_probs=23.0

Q ss_pred             eeeCCCCCccCCCCCCccCChhhHHhHhhhccCC
Q 008103           46 VYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE   79 (577)
Q Consensus        46 py~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htge   79 (577)
                      .+.|.+  |     +|+|...+.|++|..+|++|
T Consensus         2 ~hvc~e--c-----gkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAE--C-----GKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTT--T-----CCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHH--H-----hHHHHHHHHHHHHhhcccCC
Confidence            357888  7     99999999999999999875

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.74  E-value=0.003  Score=38.82  Aligned_cols=26  Identities=31%  Similarity=0.577  Sum_probs=22.2

Q ss_pred             eCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103           48 LCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus        48 ~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      .|+.  |     .|.|.++..|+.|-|.|++||
T Consensus         2 qcp~--c-----~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPT--C-----HKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTT--T-----CCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcc--h-----HHHHHHhHhhhhccccccCCC
Confidence            4777  7     899999999999999999875

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.002  Score=41.54  Aligned_cols=30  Identities=30%  Similarity=0.604  Sum_probs=24.9

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHh-hhccCC
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHY-SRKHGE   79 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~-r~Htge   79 (577)
                      |||.|..++|     .|+|...+.-.+|+ |+|..|
T Consensus         1 kPY~C~~~gC-----~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGC-----SKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTC-----CCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCCh-----hhhhcchhhhhhhccccccCC
Confidence            5899999888     89999888888886 777653

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0023  Score=40.53  Aligned_cols=24  Identities=42%  Similarity=0.671  Sum_probs=12.4

Q ss_pred             cccccCcCCCcccchhhhhhhccc
Q 008103           80 KKWKCEKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        80 KpykC~~C~K~F~sks~L~~H~r~  103 (577)
                      |||.|.+|..+....++|+.|+++
T Consensus         1 kpy~cqyc~yrsadssnlkthikt   24 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CCccccccccccccchhhhhhhhc
Confidence            345555555555555555555544

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0033  Score=43.27  Aligned_cols=28  Identities=18%  Similarity=0.489  Sum_probs=25.3

Q ss_pred             CCCCcccccccccccCChHHHHHHHHhc
Q 008103            1 MATNRFICEVCNKGFQREQNLQLHRRGH   28 (577)
Q Consensus         1 t~~kpy~C~~CgK~F~~~s~L~~H~r~H   28 (577)
                      |+-|||.|.+|+|.|--+..+.+|....
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~C   28 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTSC   28 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhhh
Confidence            6789999999999999999999997653

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.58  E-value=0.0036  Score=38.49  Aligned_cols=23  Identities=35%  Similarity=0.726  Sum_probs=22.1

Q ss_pred             cccccccccCChHHHHHHHHhcC
Q 008103            7 ICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         7 ~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      +|+.|.|.|.++..|+.|-|.|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~ht   24 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHT   24 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHS
T ss_pred             cCcchHHHHHHhHhhhhcccccc
Confidence            79999999999999999999997

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0041  Score=42.19  Aligned_cols=27  Identities=22%  Similarity=0.661  Sum_probs=24.1

Q ss_pred             CCceeecC---CCCCcCChhHHHHHHHHhc
Q 008103          105 GTREYRCD---CGTLFSRRDSFITHRAFCD  131 (577)
Q Consensus       105 geKpy~C~---Cgk~F~~~s~L~~H~r~h~  131 (577)
                      .+|||.|.   |+.+|.+.+.|..|++.|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            47999995   9999999999999999884

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=95.42  E-value=0.0029  Score=38.37  Aligned_cols=22  Identities=23%  Similarity=0.711  Sum_probs=17.7

Q ss_pred             eecC-CCCCcCChhHHHHHHHHh
Q 008103          109 YRCD-CGTLFSRRDSFITHRAFC  130 (577)
Q Consensus       109 y~C~-Cgk~F~~~s~L~~H~r~h  130 (577)
                      |+|. |.+.|..++.|.+|+++|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            6787 888888888888888776

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.37  E-value=0.0037  Score=42.55  Aligned_cols=27  Identities=26%  Similarity=0.588  Sum_probs=25.5

Q ss_pred             CCcccccccccccCChHHHHHHHHhcC
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      .+.|+|.+|+|.|.+-..|--|++.|.
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhc
Confidence            578999999999999999999999996

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.0031  Score=39.78  Aligned_cols=24  Identities=29%  Similarity=0.509  Sum_probs=13.1

Q ss_pred             cccccCcCCCcccchhhhhhhccc
Q 008103           80 KKWKCEKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        80 KpykC~~C~K~F~sks~L~~H~r~  103 (577)
                      +||+|++|.....+.++|..|++.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHH
Confidence            355555555555555555555554

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0043  Score=39.04  Aligned_cols=23  Identities=17%  Similarity=0.572  Sum_probs=11.9

Q ss_pred             ccccCcCCCcccchhhhhhhccc
Q 008103           81 KWKCEKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        81 pykC~~C~K~F~sks~L~~H~r~  103 (577)
                      ||.|..|...|..+.+|..|++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            34555555555555555555543

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.0062  Score=38.32  Aligned_cols=24  Identities=29%  Similarity=0.652  Sum_probs=22.6

Q ss_pred             cccccccccccCChHHHHHHHHhc
Q 008103            5 RFICEVCNKGFQREQNLQLHRRGH   28 (577)
Q Consensus         5 py~C~~CgK~F~~~s~L~~H~r~H   28 (577)
                      ||.|..|.-.|.++.+|..||+..
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            799999999999999999999864

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.68  E-value=0.0049  Score=38.87  Aligned_cols=26  Identities=35%  Similarity=0.699  Sum_probs=23.8

Q ss_pred             Ccccccc--cccccCChHHHHHHHHhcC
Q 008103            4 NRFICEV--CNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         4 kpy~C~~--CgK~F~~~s~L~~H~r~H~   29 (577)
                      |||.|.+  |.|.|.+...|.+|..+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~tht   28 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHT   28 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHH
T ss_pred             CCcCcccccccccchhhhhhhhhhcccc
Confidence            6899965  9999999999999999986

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.0042  Score=40.01  Aligned_cols=24  Identities=25%  Similarity=0.593  Sum_probs=19.8

Q ss_pred             ceeecC---CCCCcCChhHHHHHH-HHh
Q 008103          107 REYRCD---CGTLFSRRDSFITHR-AFC  130 (577)
Q Consensus       107 Kpy~C~---Cgk~F~~~s~L~~H~-r~h  130 (577)
                      |||.|+   |.|.|...+...+|+ |+|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTH   28 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTH   28 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTT
T ss_pred             CCccccCCChhhhhcchhhhhhhccccc
Confidence            688886   888888888888886 666

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.011  Score=40.05  Aligned_cols=30  Identities=20%  Similarity=0.541  Sum_probs=26.9

Q ss_pred             cCceeeCCCCCccCCCCCCccCChhhHHhHhhhcc
Q 008103           43 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKH   77 (577)
Q Consensus        43 ~ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Ht   77 (577)
                      .+|||.|..++|     +.+|.....|..|...|.
T Consensus         3 ddkPF~C~~pGC-----~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGC-----GQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTT-----CCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCc-----cccccchHHHHHhhhhhe
Confidence            479999999999     999999999999988885

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.06  E-value=0.017  Score=35.73  Aligned_cols=24  Identities=33%  Similarity=0.630  Sum_probs=21.6

Q ss_pred             cccccccccccCChHHHHHHHHhc
Q 008103            5 RFICEVCNKGFQREQNLQLHRRGH   28 (577)
Q Consensus         5 py~C~~CgK~F~~~s~L~~H~r~H   28 (577)
                      ||+|..|+|.|-++.+|..|....
T Consensus         1 pf~c~kcgkcyfrkenllehearn   24 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEARN   24 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHHC
T ss_pred             CCccccchhhhhhHhHHHHHHHHh
Confidence            799999999999999999997653

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=94.05  E-value=0.011  Score=37.99  Aligned_cols=23  Identities=30%  Similarity=0.700  Sum_probs=21.3

Q ss_pred             cccccccccccCChHHHHHHHHh
Q 008103            5 RFICEVCNKGFQREQNLQLHRRG   27 (577)
Q Consensus         5 py~C~~CgK~F~~~s~L~~H~r~   27 (577)
                      ||.|.+|++.|.++..|.+|...
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qK   23 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQK   23 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTT
T ss_pred             CcccccccchhhHHHHHHHHHHH
Confidence            89999999999999999999754

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=93.92  E-value=0.0099  Score=38.23  Aligned_cols=21  Identities=43%  Similarity=0.952  Sum_probs=11.2

Q ss_pred             eeecC-CCCCcCChhHHHHHHH
Q 008103          108 EYRCD-CGTLFSRRDSFITHRA  128 (577)
Q Consensus       108 py~C~-Cgk~F~~~s~L~~H~r  128 (577)
                      ||.|. |++.|.+++.|.+|..
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~q   22 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQ   22 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT
T ss_pred             CcccccccchhhHHHHHHHHHH
Confidence            45555 5555555555555543

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.97  E-value=0.031  Score=35.24  Aligned_cols=27  Identities=33%  Similarity=0.614  Sum_probs=23.9

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccC
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG   78 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htg   78 (577)
                      +||.|..  |     ..+..+.++|+.|+++.+.
T Consensus         1 kpy~cqy--c-----~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQY--C-----EFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSS--S-----SCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccc--c-----ccccccchhhhhhhhcccc
Confidence            6899999  9     8999999999999998554

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.90  E-value=0.031  Score=35.17  Aligned_cols=26  Identities=15%  Similarity=0.415  Sum_probs=23.3

Q ss_pred             ceeecC-CCCCcCChhHHHHHHHHhcc
Q 008103          107 REYRCD-CGTLFSRRDSFITHRAFCDA  132 (577)
Q Consensus       107 Kpy~C~-Cgk~F~~~s~L~~H~r~h~~  132 (577)
                      |||+|+ |.-.-.+.+.|.+|++..|.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            699999 99999999999999987653

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.85  E-value=0.024  Score=34.24  Aligned_cols=23  Identities=26%  Similarity=0.631  Sum_probs=21.3

Q ss_pred             cccccccccccCChHHHHHHHHh
Q 008103            5 RFICEVCNKGFQREQNLQLHRRG   27 (577)
Q Consensus         5 py~C~~CgK~F~~~s~L~~H~r~   27 (577)
                      ||+|..|...|-.+..|+.|+..
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999753

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.23  E-value=0.043  Score=33.83  Aligned_cols=21  Identities=29%  Similarity=0.940  Sum_probs=11.2

Q ss_pred             eeecC-CCCCcCChhHHHHHHH
Q 008103          108 EYRCD-CGTLFSRRDSFITHRA  128 (577)
Q Consensus       108 py~C~-Cgk~F~~~s~L~~H~r  128 (577)
                      ||+|. |+|.|-++..|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            35555 5555555555555544

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.71  E-value=0.045  Score=33.00  Aligned_cols=21  Identities=24%  Similarity=0.765  Sum_probs=16.8

Q ss_pred             eeecC-CCCCcCChhHHHHHHH
Q 008103          108 EYRCD-CGTLFSRRDSFITHRA  128 (577)
Q Consensus       108 py~C~-Cgk~F~~~s~L~~H~r  128 (577)
                      ||+|. |...|..+..|..|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            68888 8888888888888864

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.49  E-value=0.056  Score=38.31  Aligned_cols=27  Identities=26%  Similarity=0.557  Sum_probs=24.3

Q ss_pred             CCcccccccccccCChHHHHHHHHhcC
Q 008103            3 TNRFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         3 ~kpy~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      .--|.|..|+|.|.+...|+.|...|-
T Consensus         4 ~~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           4 AGILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             cceeeccccccccCCHHHHhHhHHhcC
Confidence            346899999999999999999999884

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.45  E-value=0.048  Score=32.99  Aligned_cols=23  Identities=30%  Similarity=0.632  Sum_probs=21.2

Q ss_pred             ccccccccccCChHHHHHHHHhc
Q 008103            6 FICEVCNKGFQREQNLQLHRRGH   28 (577)
Q Consensus         6 y~C~~CgK~F~~~s~L~~H~r~H   28 (577)
                      |.|++|-|.|.++.++..|.++-
T Consensus         2 ypcp~cfkeftrkdnm~ahvkii   24 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKII   24 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEEe
Confidence            88999999999999999998863

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.25  E-value=0.051  Score=33.72  Aligned_cols=25  Identities=24%  Similarity=0.436  Sum_probs=23.2

Q ss_pred             cccccccccccCChHHHHHHHHhcC
Q 008103            5 RFICEVCNKGFQREQNLQLHRRGHN   29 (577)
Q Consensus         5 py~C~~CgK~F~~~s~L~~H~r~H~   29 (577)
                      |-+|++|......+..|+.|.|+|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            6689999999999999999999984

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.74  E-value=0.078  Score=33.15  Aligned_cols=29  Identities=21%  Similarity=0.545  Sum_probs=22.1

Q ss_pred             CceeeCCCCCccCCCCCCccCChhhHHhHhhhccCC
Q 008103           44 RKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE   79 (577)
Q Consensus        44 ekpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htge   79 (577)
                      +..|.|..  |     ...|+.+-.|+.|+..|++|
T Consensus         2 eqvftcs~--c-----qe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSV--C-----QETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSS--S-----CCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHH--H-----HHHHHHHHhheeeeecccCC
Confidence            45677877  7     77888888888888888765

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.26  E-value=0.12  Score=34.82  Aligned_cols=29  Identities=17%  Similarity=0.509  Sum_probs=21.4

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccCCc
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK   80 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~HtgeK   80 (577)
                      +.|+|.+  |     .|.|.+-..|--|++.|..++
T Consensus         4 r~~~C~~--C-----~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           4 RSYTCSF--C-----KREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSEECTT--T-----CCEESSHHHHHHHHHTTCCSC
T ss_pred             CccCCCC--C-----CCccCCcccccchHhhhcchH
Confidence            5577777  7     778887777878877776554

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.25  E-value=0.063  Score=33.19  Aligned_cols=23  Identities=30%  Similarity=0.612  Sum_probs=14.7

Q ss_pred             ccccCcCCCcccchhhhhhhccc
Q 008103           81 KWKCEKCSKRYAVQSDWKAHSKT  103 (577)
Q Consensus        81 pykC~~C~K~F~sks~L~~H~r~  103 (577)
                      +|.|+.|+....++++|..|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            35666666666666666666654

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.98  E-value=0.1  Score=32.25  Aligned_cols=24  Identities=29%  Similarity=0.688  Sum_probs=21.8

Q ss_pred             cccccccccccCChHHHHHHHHhc
Q 008103            5 RFICEVCNKGFQREQNLQLHRRGH   28 (577)
Q Consensus         5 py~C~~CgK~F~~~s~L~~H~r~H   28 (577)
                      .|.|++|.....+++.|+.|++.-
T Consensus         2 k~qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CccCCcchhheeehhhhhHHhhhc
Confidence            589999999999999999998853

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=88.04  E-value=0.11  Score=32.99  Aligned_cols=30  Identities=30%  Similarity=0.583  Sum_probs=26.9

Q ss_pred             ceeeCCCCCccCCCCCCccCChhhHHhHhhhccCC
Q 008103           45 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE   79 (577)
Q Consensus        45 kpy~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Htge   79 (577)
                      +.|.|..++|     +..|...-.|..|+..|+||
T Consensus         2 k~~iCsf~dC-----~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADC-----GAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGG-----CCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCc-----chhhccchhhhHHhhhhcCC
Confidence            5689999989     99999989999999999986

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=87.57  E-value=0.2  Score=30.20  Aligned_cols=21  Identities=33%  Similarity=0.778  Sum_probs=11.0

Q ss_pred             eecC-CCCCcCChhHHHHHHHH
Q 008103          109 YRCD-CGTLFSRRDSFITHRAF  129 (577)
Q Consensus       109 y~C~-Cgk~F~~~s~L~~H~r~  129 (577)
                      |.|+ |-|.|.+++.+..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            4455 55555555555555543

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=87.00  E-value=0.16  Score=31.08  Aligned_cols=26  Identities=23%  Similarity=0.488  Sum_probs=23.6

Q ss_pred             eeCCCCCccCCCCCCccCChhhHHhHhhhcc
Q 008103           47 YLCPEPTCVHHDPSRALGDLTGIKKHYSRKH   77 (577)
Q Consensus        47 y~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Ht   77 (577)
                      |.|...+|     +|+|+....|+.|+..|+
T Consensus         2 yvchfe~c-----~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENC-----GKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTC-----CCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCc-----hHHHhhccceEEEeeccc
Confidence            78988889     999999999999998886

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.99  E-value=0.19  Score=32.86  Aligned_cols=27  Identities=26%  Similarity=0.573  Sum_probs=23.4

Q ss_pred             CcccccccccccCChHHHHHHHHhcCC
Q 008103            4 NRFICEVCNKGFQREQNLQLHRRGHNL   30 (577)
Q Consensus         4 kpy~C~~CgK~F~~~s~L~~H~r~H~~   30 (577)
                      -.|.|..|+|.|.++..+.+|.....+
T Consensus         3 ~afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             ceeeecccccchhcchHHHHHhhhcCC
Confidence            358999999999999999999877654

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.27  E-value=0.25  Score=32.31  Aligned_cols=23  Identities=35%  Similarity=0.980  Sum_probs=18.6

Q ss_pred             eeecC-CCCCcCChhHHHHHHHHh
Q 008103          108 EYRCD-CGTLFSRRDSFITHRAFC  130 (577)
Q Consensus       108 py~C~-Cgk~F~~~s~L~~H~r~h  130 (577)
                      .|.|. |+|.|.++..+.+|...|
T Consensus         4 afvcskcgktftrrntm~rha~nc   27 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNC   27 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHC
T ss_pred             eeeecccccchhcchHHHHHhhhc
Confidence            47888 888888888888887766

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.62  E-value=0.39  Score=29.62  Aligned_cols=24  Identities=21%  Similarity=0.355  Sum_probs=16.2

Q ss_pred             eeCCCCCccCCCCCCccCChhhHHhHhhhcc
Q 008103           47 YLCPEPTCVHHDPSRALGDLTGIKKHYSRKH   77 (577)
Q Consensus        47 y~C~~~~C~~~~~~k~F~~~s~Lk~H~r~Ht   77 (577)
                      -+|++  |     .+....+..|+.|.|+|-
T Consensus         3 ekc~e--c-----syscsskaalrvh~rihc   26 (28)
T d1x5wa1           3 EKCSE--C-----SYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             EECSS--S-----SCEESSHHHHHHHHGGGC
T ss_pred             ccCcc--c-----ccccCcHHHHHHhhcccc
Confidence            45666  6     677777777777777764

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.02  E-value=0.37  Score=33.98  Aligned_cols=25  Identities=24%  Similarity=0.550  Sum_probs=22.0

Q ss_pred             ceeecC-CCCCcCChhHHHHHHHHhc
Q 008103          107 REYRCD-CGTLFSRRDSFITHRAFCD  131 (577)
Q Consensus       107 Kpy~C~-Cgk~F~~~s~L~~H~r~h~  131 (577)
                      -.|.|- |+|.|.....|+.|...|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            357899 9999999999999999883

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.19  E-value=0.4  Score=29.65  Aligned_cols=22  Identities=27%  Similarity=0.612  Sum_probs=19.5

Q ss_pred             cccc--cccccCChHHHHHHHHhc
Q 008103            7 ICEV--CNKGFQREQNLQLHRRGH   28 (577)
Q Consensus         7 ~C~~--CgK~F~~~s~L~~H~r~H   28 (577)
                      .|+.  |.|.|++.+.++.|+.+|
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGG
T ss_pred             cCCcccHHHHhhchHHHHHHhhcc
Confidence            4665  999999999999999887