BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008104
(577 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 87/403 (21%), Positives = 153/403 (37%), Gaps = 55/403 (13%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKP---RMGNILPYKDS 258
Y T + P L +D G W+ CD + Y+P R
Sbjct: 22 YVTTINQRTPLVSENLVVDLGGRFLWVDCDQ------NYVSSTYRPVRCRTSQCSLSGSI 75
Query: 259 LCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGS-----LTKPNV 313
C + +PG C + ++++ G +A D + + +GS +T P
Sbjct: 76 ACGDCFNGPRPG-CNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRF 134
Query: 314 VFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGIIKNVVGHCLTTNAGGGGYM 373
+F CA LL N G+ GL R +++LPSQ AS K CL+ + +
Sbjct: 135 IFSCA--PTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVI 192
Query: 374 FLGHD--------LVPSWGMAWVPMLDSPF------------MELY-HTEILKINYGSSP 412
G+D +V + + P+L +P +E + + +KIN
Sbjct: 193 IFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVA 252
Query: 413 LN---LGARNSQVGWALFDTGSSYTYFTKQAYSELI-ASLKEVSSDGLVLDASDPTLPVC 468
LN L ++ +G T + YT Y + A +KE ++ + AS C
Sbjct: 253 LNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGAC 312
Query: 469 WRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSE 528
F +I+ + ++ Q S + I+ +V +CLG++DG
Sbjct: 313 ----FSTDNILSTRLGPSVPSIDL--VLQSESVVWTITGSNSMVYINDNVVCLGVVDGGS 366
Query: 529 VHNGSTIILGDISLRGQLVVYDNVNKRIGW------AKSHCMN 565
+ ++I++G L LV +D R+G+ +++ C N
Sbjct: 367 -NLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCAN 408
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 87/403 (21%), Positives = 153/403 (37%), Gaps = 55/403 (13%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKP---RMGNILPYKDS 258
Y T + P L +D G W+ CD + Y+P R
Sbjct: 22 YVTTINQRTPLVSENLVVDLGGRFLWVDCDQ------NYVSSTYRPVRCRTSQCSLSGSI 75
Query: 259 LCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGS-----LTKPNV 313
C + +PG C + ++++ G +A D + + +GS +T P
Sbjct: 76 ACGDCFNGPRPG-CNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRF 134
Query: 314 VFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGIIKNVVGHCLTTNAGGGGYM 373
+F CA LL N G+ GL R +++LPSQ AS K CL+ + +
Sbjct: 135 IFSCA--PTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVI 192
Query: 374 FLGHD--------LVPSWGMAWVPMLDSPF------------MELY-HTEILKINYGSSP 412
G+D +V + + P+L +P +E + + +KIN
Sbjct: 193 IFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVA 252
Query: 413 LN---LGARNSQVGWALFDTGSSYTYFTKQAYSELI-ASLKEVSSDGLVLDASDPTLPVC 468
LN L ++ +G T + YT Y + A +KE ++ + AS C
Sbjct: 253 LNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGAC 312
Query: 469 WRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSE 528
F +I+ + ++ Q S + I+ +V +CLG++DG
Sbjct: 313 ----FSTDNILSTRLGPSVPSIDL--VLQSESVVWTITGSNSMVYINDNVVCLGVVDGGS 366
Query: 529 VHNGSTIILGDISLRGQLVVYDNVNKRIGW------AKSHCMN 565
+ ++I++G L LV +D R+G+ +++ C N
Sbjct: 367 -NLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCAN 408
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 85/384 (22%), Positives = 151/384 (39%), Gaps = 64/384 (16%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M++G PP+ + +DTGS S+ A P I Y D+
Sbjct: 15 YYLEMLIGTPPQKLQILVDTGS-----------SNFAVAGTP-----HSYIDTYFDTERS 58
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + D ++Y S G + D +TI G T V ++
Sbjct: 59 STYRS---------KGFDVTVKYT-QGSWTGFVGED--LVTIPKGFNTSFLVNIATIFES 106
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPSQ--------LASQGIIKNV-------VGHCLTTN 366
+ L +K +GILGL+ A ++ PS L +Q I NV G + +
Sbjct: 107 ENFFLPG-IKWNGILGLAYATLAKPSSSLETFFDSLVTQANIPNVFSMQMCGAGLPVAGS 165
Query: 367 AGGGGYMFLGHDLVPSW--GMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGW 424
GG + LG + PS G W + + Y EILK+ G LNL R
Sbjct: 166 GTNGGSLVLG-GIEPSLYKGDIWYTPIKEEWY--YQIEILKLEIGGQSLNLDCREYNADK 222
Query: 425 ALFDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASD----PTLPVCW-RAKFPIRSIV 479
A+ D+G++ ++ + ++ ++ S L+ + SD + CW ++ P
Sbjct: 223 AIVDSGTTLLRLPQKVFDAVVEAVARAS---LIPEFSDGFWTGSQLACWTNSETPW---- 275
Query: 480 DVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHNGSTIILGD 539
+F ++++ + S + I P+ Y+ + + + +++G
Sbjct: 276 ---SYFPKISIYLRDENSSRSFRITILPQLYIQPMMGAGLNYECYRFGISPSTNALVIGA 332
Query: 540 ISLRGQLVVYDNVNKRIGWAKSHC 563
+ G V++D KR+G+A S C
Sbjct: 333 TVMEGFYVIFDRAQKRVGFAASPC 356
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 128/316 (40%), Gaps = 75/316 (23%)
Query: 287 HSSSMGVLARDELHLTIENGS-------LTKPNVVFGCAYD---QQGLLLNTLVKTDGIL 336
+ +G L D L + GS +T P +F CA Q+GL NT G+
Sbjct: 104 QQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNT----QGVA 159
Query: 337 GLSRAKVSLPSQLASQGIIKNVVGHCLTTNAGGGGYMFLG---------------HDLVP 381
GL A +SLP+QLAS ++ CL+ G + G HDL
Sbjct: 160 GLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDL-- 217
Query: 382 SWGMAWVPMLDSPFMELYHTEI--LKINYGSS-PLNLGARN---SQVGWALFDTGSSYTY 435
A+ P+ + E Y+ + ++IN S PLN + S G + T + +
Sbjct: 218 ----AFTPLTITLQGE-YNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMV 272
Query: 436 FTK---QAYSELI-------ASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFF 485
+ QA++++ A +K V+ GL +++ +P +V K
Sbjct: 273 LQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSNKIN-------AYPSVDLVMDKP-- 323
Query: 486 KTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHNGSTIILGDISLRGQ 545
G W+ IS E +V ++ G CLG+++G + + I LG L
Sbjct: 324 ------NGPVWR-------ISGEDLMVQAQPGVTCLGVMNGG-MQPRAEITLGARQLEEN 369
Query: 546 LVVYDNVNKRIGWAKS 561
LVV+D R+G++ S
Sbjct: 370 LVVFDLARSRVGFSTS 385
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 90/377 (23%), Positives = 145/377 (38%), Gaps = 69/377 (18%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
Y D YF + +G PP+ + + DTGS W+ C S A ++ + P
Sbjct: 9 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVP-SVYCQSQACTSHSRFNP--------- 58
Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFG 316
+ Y Q + ++Y S + G D L + S+ PN FG
Sbjct: 59 ---------SESSTYSTNGQ--TFSLQYGSGSLT-GFFGYDTLTVQ----SIQVPNQEFG 102
Query: 317 CAYDQQGLLLNTLVKTDGILGLSRAKVSL-PSQLASQGIIKN------VVGHCLTTNAG- 368
+ ++ G + DGI+GL+ +S+ + A QG+++ V L+ G
Sbjct: 103 LSENEPGTNF-VYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGS 161
Query: 369 -GGGYMFLGHDLVPSWG-MAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWAL 426
GG +F G D G + W P+ + ++ E L S + G + A+
Sbjct: 162 SGGAVVFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQ------AI 215
Query: 427 FDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFK 486
DTG+S +Q S L+ + G D L C + Q
Sbjct: 216 VDTGTSLLTVPQQYMSALL------QATGAQEDEYGQFLVNC-----------NSIQNLP 258
Query: 487 TLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGS-EVHNGSTI-ILGDISLRG 544
+LT I +F + P Y ++S G +G+ NG + ILGD+ LR
Sbjct: 259 SLTFI------INGVEFPLPPSSY-ILSNNGYCTVGVEPTYLSSQNGQPLWILGDVFLRS 311
Query: 545 QLVVYDNVNKRIGWAKS 561
VYD N R+G+A +
Sbjct: 312 YYSVYDLGNNRVGFATA 328
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 88/400 (22%), Positives = 151/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 73
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ D+
Sbjct: 74 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANIAAITESDK 123
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+N +GILGL+ A+++ P L Q + N+ G L +
Sbjct: 124 --FFING-SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 180
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 181 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 236
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + +AS+K SS DG L VCW+A
Sbjct: 237 NYDKSIVDSGTTNLRLPKKVFEAAVASIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 292
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 293 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 343
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 344 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 383
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 148/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y+ L
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHRY--YQRQLSS 78
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
+ K Y CQ G L D + + + N+ A +
Sbjct: 79 TYRDLRKGVYVPYCQ-----------GKWEGELGTDLVSIPHGPNVTVRANI---AAITE 124
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+GILGL+ A+++ P L Q + N+ G L +
Sbjct: 125 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 184
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 185 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 240
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 241 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 296
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 297 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 347
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 348 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 387
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 76/369 (20%), Positives = 133/369 (36%), Gaps = 48/369 (13%)
Query: 217 LDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGY-CETC 275
L +D L W CD G P + +P C+ PG +C
Sbjct: 26 LVLDVAGPLVWSTCD--------GGQPPAE------IPCSSPTCLLANAYPAPGCPAPSC 71
Query: 276 ------QQCD-YEIEYADHSSSMGVLARDELHLTIENGS--LTKPNVVFGCAYDQQGLLL 326
+ C Y + + G L+ +GS ++K NV A LL
Sbjct: 72 GSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLA 131
Query: 327 NTLVKTDGILGLSRAKVSLPSQLASQGIIKNVVGHCLTTNAGGGGYMFLGHDLVP----S 382
+ + G+ GL+ + ++LP+Q+AS + N CL T GG G G VP +
Sbjct: 132 SLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPT--GGPGVAIFGGGPVPWPQFT 189
Query: 383 WGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYS 442
M + P++ ++ I G + + + G + T Y Y
Sbjct: 190 QSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYR 249
Query: 443 ELIASLKEV-----SSDGLVLDASDPTLP--VCWRAKFPIRSIVDVKQFFKTLTLHFGSK 495
L+ + + ++ V A + P VC+ K ++ L L GS
Sbjct: 250 PLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSD 309
Query: 496 WQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHNGS----TIILGDISLRGQLVVYDN 551
W + + +V K+G C+ ++ V G +ILG + ++ +D
Sbjct: 310 WTMTG-------KNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDM 362
Query: 552 VNKRIGWAK 560
KR+G+++
Sbjct: 363 EKKRLGFSR 371
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/375 (21%), Positives = 148/375 (39%), Gaps = 72/375 (19%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
Y D YF + +G P + + + DTGS W+ P C+
Sbjct: 53 YLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWV----PSVYCS------------------ 90
Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSM-GVLARDELHLTIENGSLTKPNVVF 315
SL P T + E+ + SM G+L D T++ G ++ N +F
Sbjct: 91 -SLACSDHNQFNPDDSSTFEATSQELSITYGTGSMTGILGYD----TVQVGGISDTNQIF 145
Query: 316 GCAYDQQGLLLNTLVKTDGILGLSRAKVSLP------SQLASQGII-KNVVGHCLTTNAG 368
G + + G L DGILGL+ +S L QG++ +++ L++N
Sbjct: 146 GLSETEPGSFL-YYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDD 204
Query: 369 GGGYMFLG--HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWAL 426
G + LG + + WVP+ + ++ I ++ + + G + A+
Sbjct: 205 SGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSI-TMDGETIACSGGCQ------AI 257
Query: 427 FDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFK 486
DTG+S + +++ + SD + SD + + + I S+ D+
Sbjct: 258 VDTGTSL-------LTGPTSAIANIQSDIGASENSDGEMVISCSS---IDSLPDI----- 302
Query: 487 TLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEV--HNGSTIILGDISLRG 544
+ I ++ +SP Y++ + + C +G +V +G ILGD+ +R
Sbjct: 303 --------VFTIDGVQYPLSPSAYIL--QDDDSCTSGFEGMDVPTSSGELWILGDVFIRQ 352
Query: 545 QLVVYDNVNKRIGWA 559
V+D N ++G A
Sbjct: 353 YYTVFDRANNKVGLA 367
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/375 (21%), Positives = 148/375 (39%), Gaps = 72/375 (19%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
Y D YF + +G P + + + DTGS W+ P C+
Sbjct: 53 YLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWV----PSVYCS------------------ 90
Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSM-GVLARDELHLTIENGSLTKPNVVF 315
SL P T + E+ + SM G+L D T++ G ++ N +F
Sbjct: 91 -SLACSDHNQFNPDDSSTFEATXQELSITYGTGSMTGILGYD----TVQVGGISDTNQIF 145
Query: 316 GCAYDQQGLLLNTLVKTDGILGLSRAKVSLP------SQLASQGII-KNVVGHCLTTNAG 368
G + + G L DGILGL+ +S L QG++ +++ L++N
Sbjct: 146 GLSETEPGSFL-YYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDD 204
Query: 369 GGGYMFLG--HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWAL 426
G + LG + + WVP+ + ++ I ++ + + G + A+
Sbjct: 205 SGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSI-TMDGETIACSGGCQ------AI 257
Query: 427 FDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFK 486
DTG+S + +++ + SD + SD + + + I S+ D+
Sbjct: 258 VDTGTSL-------LTGPTSAIANIQSDIGASENSDGEMVISCSS---IDSLPDI----- 302
Query: 487 TLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEV--HNGSTIILGDISLRG 544
+ I ++ +SP Y++ + + C +G +V +G ILGD+ +R
Sbjct: 303 --------VFTIDGVQYPLSPSAYIL--QDDDSCTSGFEGMDVPTSSGELWILGDVFIRQ 352
Query: 545 QLVVYDNVNKRIGWA 559
V+D N ++G A
Sbjct: 353 YYTVFDRANNKVGLA 367
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 150/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 76
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ D+
Sbjct: 77 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANIAAITESDK 126
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+N +GILGL+ A+++ P L Q + N+ G L +
Sbjct: 127 --FFING-SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 183
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 184 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 239
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 240 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 295
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 296 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 346
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 347 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 386
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 150/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 78
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ D+
Sbjct: 79 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANIAAITESDK 128
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+N +GILGL+ A+++ P L Q + N+ G L +
Sbjct: 129 --FFING-SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 185
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 186 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 241
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 242 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 297
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 298 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 348
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 349 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 388
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 150/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 73
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ D+
Sbjct: 74 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANIAAITESDK 123
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+N +GILGL+ A+++ P L Q + N+ G L +
Sbjct: 124 --FFING-SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 180
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 181 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 236
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 237 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 292
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 293 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 343
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 344 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 383
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 150/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 32 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 75
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ D+
Sbjct: 76 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANIAAITESDK 125
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+N +GILGL+ A+++ P L Q + N+ G L +
Sbjct: 126 --FFING-SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 182
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 183 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 238
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 239 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 294
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 295 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 345
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 346 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 385
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 150/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 54 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 97
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ D+
Sbjct: 98 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANIAAITESDK 147
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+N +GILGL+ A+++ P L Q + N+ G L +
Sbjct: 148 --FFING-SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 204
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 205 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 260
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 261 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 316
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 317 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 367
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 368 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 407
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 150/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 37 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 80
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ D+
Sbjct: 81 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANIAAITESDK 130
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+N +GILGL+ A+++ P L Q + N+ G L +
Sbjct: 131 --FFING-SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 187
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 188 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 243
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 244 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 299
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 300 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 350
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 351 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 390
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 150/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 76
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ D+
Sbjct: 77 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANIAAITESDK 126
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+N +GILGL+ A+++ P L Q + N+ G L +
Sbjct: 127 --FFING-SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 183
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 184 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 239
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 240 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 295
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 296 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 346
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 347 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 386
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 150/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 76
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ D+
Sbjct: 77 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANIAAITESDK 126
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+N +GILGL+ A+++ P L Q + N+ G L +
Sbjct: 127 --FFING-SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 183
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 184 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 239
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 240 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 295
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 296 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 346
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 347 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 386
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/375 (21%), Positives = 144/375 (38%), Gaps = 72/375 (19%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
Y D YF + +G P + + + DTGS W+ P + Y
Sbjct: 9 YLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWV------------------PSV-----YC 45
Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSM-GVLARDELHLTIENGSLTKPNVVF 315
SL P T + E+ + SM G+L D T++ G ++ N +F
Sbjct: 46 SSLACSDHNQFNPDDSSTFEATSQELSITYGTGSMTGILGYD----TVQVGGISDTNQIF 101
Query: 316 GCAYDQQGLLLNTLVKTDGILGLSRAKVSLPS------QLASQGII-KNVVGHCLTTNAG 368
G + + G L DGILGL+ +S L QG++ +++ L++N
Sbjct: 102 GLSETEPGSFL-YYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDD 160
Query: 369 GGGYMFLG--HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWAL 426
G + LG + + WVP+ + ++ I ++ + + G + A+
Sbjct: 161 SGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSI-TMDGETIACSGGCQ------AI 213
Query: 427 FDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFK 486
DTG+S A + + SD + SD + + + + IV
Sbjct: 214 VDTGTSLLTGPTSA-------IANIQSDIGASENSDGEMVISCSSIASLPDIV------- 259
Query: 487 TLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEV--HNGSTIILGDISLRG 544
+ I ++ +SP Y++ + + C +G +V +G ILGD+ +R
Sbjct: 260 ---------FTINGVQYPLSPSAYIL--QDDDSCTSGFEGMDVPTSSGELWILGDVFIRQ 308
Query: 545 QLVVYDNVNKRIGWA 559
V+D N ++G A
Sbjct: 309 YYTVFDRANNKVGLA 323
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 150/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 77
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ D+
Sbjct: 78 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANIAAITESDK 127
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+N +GILGL+ A+++ P L Q + N+ G L +
Sbjct: 128 --FFING-SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 184
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 185 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 240
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 241 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 296
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 297 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 347
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 348 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 387
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 150/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 77
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ D+
Sbjct: 78 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANIAAITESDK 127
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+N +GILGL+ A+++ P L Q + N+ G L +
Sbjct: 128 --FFING-SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 184
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 185 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 240
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 241 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 296
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 297 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 347
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 348 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 387
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 150/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 73
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ D+
Sbjct: 74 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANIAAITESDK 123
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+N +GILGL+ A+++ P L Q + N+ G L +
Sbjct: 124 --FFING-SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 180
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 181 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 236
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 237 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 292
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 293 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 343
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 344 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 383
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 150/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 78
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ D+
Sbjct: 79 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANIAAITESDK 128
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+N +GILGL+ A+++ P L Q + N+ G L +
Sbjct: 129 --FFING-SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 185
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 186 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 241
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 242 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 297
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 298 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 348
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 349 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 388
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 150/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 31 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 74
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ D+
Sbjct: 75 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANIAAITESDK 124
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+N +GILGL+ A+++ P L Q + N+ G L +
Sbjct: 125 --FFING-SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 181
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 182 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 237
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 238 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 293
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 294 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 344
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 345 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 384
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 86/400 (21%), Positives = 148/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 73
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ A +
Sbjct: 74 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANI---AAITE 120
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+GILGL+ A+++ P L Q + N+ G L +
Sbjct: 121 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 180
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 181 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 236
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 237 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 292
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 293 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 343
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 344 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 383
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 81/375 (21%), Positives = 146/375 (38%), Gaps = 72/375 (19%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
Y D YF + +G P + + + DTGS W+ P C+
Sbjct: 9 YLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWV----PSVYCS------------------ 46
Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSM-GVLARDELHLTIENGSLTKPNVVF 315
SL P T + E+ + SM G+L D T++ G ++ N +F
Sbjct: 47 -SLACSDHNQFNPDDSSTFEATSQELSITYGTGSMTGILGYD----TVQVGGISDTNQIF 101
Query: 316 GCAYDQQGLLLNTLVKTDGILGLSRAKVSLP------SQLASQGII-KNVVGHCLTTNAG 368
G + + G L DGILGL+ +S L QG++ +++ L++N
Sbjct: 102 GLSETEPGSFL-YYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDD 160
Query: 369 GGGYMFLG--HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWAL 426
G + LG + + WVP+ + ++ I ++ + + G + A+
Sbjct: 161 SGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSI-TMDGETIACSGGCQ------AI 213
Query: 427 FDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFK 486
DTG+S A + + SD + SD + + + I S+ D+
Sbjct: 214 VDTGTSLLTGPTSA-------IANIQSDIGASENSDGEMVISCSS---IDSLPDI----- 258
Query: 487 TLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEV--HNGSTIILGDISLRG 544
+ I ++ +SP Y++ + + C +G +V +G ILGD+ +R
Sbjct: 259 --------VFTINGVQYPLSPSAYIL--QDDDSCTSGFEGMDVPTSSGELWILGDVFIRQ 308
Query: 545 QLVVYDNVNKRIGWA 559
V+D N ++G A
Sbjct: 309 YYTVFDRANNKVGLA 323
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 86/400 (21%), Positives = 148/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 61
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ A +
Sbjct: 62 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANI---AAITE 108
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+GILGL+ A+++ P L Q + N+ G L +
Sbjct: 109 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 168
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 169 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREWY--YEVIIVRVEINGQDLKMDCKEY 224
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 225 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 280
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 281 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 331
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 332 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 371
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 150/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 58
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ D+
Sbjct: 59 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANIAAITESDK 108
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+N +GILGL+ A+++ P L Q + N+ G L +
Sbjct: 109 --FFING-SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 165
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 166 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREWY--YEVIIVRVEINGQDLKMDCKEY 221
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 222 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 277
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 278 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 328
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 329 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 368
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 150/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 63
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ D+
Sbjct: 64 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANIAAITESDK 113
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+N +GILGL+ A+++ P L Q + N+ G L +
Sbjct: 114 --FFING-SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 170
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 171 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 226
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 227 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 282
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 283 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 333
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 334 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 373
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 86/400 (21%), Positives = 148/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 60
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ A +
Sbjct: 61 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANI---AAITE 107
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+GILGL+ A+++ P L Q + N+ G L +
Sbjct: 108 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 167
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 168 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 223
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 224 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 279
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 280 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 330
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 331 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 370
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 150/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 21 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 64
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ D+
Sbjct: 65 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANIAAITESDK 114
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+N +GILGL+ A+++ P L Q + N+ G L +
Sbjct: 115 --FFING-SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 171
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 172 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 227
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 228 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 283
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 284 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 334
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 335 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 374
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 81/375 (21%), Positives = 146/375 (38%), Gaps = 72/375 (19%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
Y D YF + +G P + + + DTGS W+ P C+
Sbjct: 9 YLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWV----PSVYCS------------------ 46
Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSM-GVLARDELHLTIENGSLTKPNVVF 315
SL P T + E+ + SM G+L D T++ G ++ N +F
Sbjct: 47 -SLACSDHNQFNPDDSSTFEATSQELSITYGTGSMTGILGYD----TVQVGGISDTNQIF 101
Query: 316 GCAYDQQGLLLNTLVKTDGILGLSRAKVSLP------SQLASQGII-KNVVGHCLTTNAG 368
G + + G L DGILGL+ +S L QG++ +++ L++N
Sbjct: 102 GLSETEPGSFL-YYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDD 160
Query: 369 GGGYMFLG--HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWAL 426
G + LG + + WVP+ + ++ I ++ + + G + A+
Sbjct: 161 SGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSI-TMDGETIACSGGCQ------AI 213
Query: 427 FDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFK 486
DTG+S A + + SD + SD + + + I S+ D+
Sbjct: 214 VDTGTSLLTGPTSA-------IANIQSDIGASENSDGEMVISCSS---IDSLPDI----- 258
Query: 487 TLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEV--HNGSTIILGDISLRG 544
+ I ++ +SP Y++ + + C +G +V +G ILGD+ +R
Sbjct: 259 --------VFTIDGVQYPLSPSAYIL--QDDDSCTSGFEGMDVPTSSGELWILGDVFIRQ 308
Query: 545 QLVVYDNVNKRIGWA 559
V+D N ++G A
Sbjct: 309 YYTVFDRANNKVGLA 323
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 86/400 (21%), Positives = 148/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 61
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ A +
Sbjct: 62 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANI---AAITE 108
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+GILGL+ A+++ P L Q + N+ G L +
Sbjct: 109 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 168
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 169 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 224
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 225 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 280
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 281 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 331
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 332 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 371
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 86/400 (21%), Positives = 148/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 61
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ A +
Sbjct: 62 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANI---AAITE 108
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+GILGL+ A+++ P L Q + N+ G L +
Sbjct: 109 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 168
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 169 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 224
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 225 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 280
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 281 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 331
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 332 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 371
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 86/400 (21%), Positives = 148/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 63
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ A +
Sbjct: 64 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANI---AAITE 110
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+GILGL+ A+++ P L Q + N+ G L +
Sbjct: 111 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 170
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 171 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 226
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 227 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 282
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 283 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 333
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 334 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 373
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 81/375 (21%), Positives = 146/375 (38%), Gaps = 72/375 (19%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
Y D YF + +G P + + + DTGS W+ P C+
Sbjct: 9 YLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWV----PSVYCS------------------ 46
Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSM-GVLARDELHLTIENGSLTKPNVVF 315
SL P T + E+ + SM G+L D T++ G ++ N +F
Sbjct: 47 -SLACSDHNQFNPDDSSTFEATXQELSITYGTGSMTGILGYD----TVQVGGISDTNQIF 101
Query: 316 GCAYDQQGLLLNTLVKTDGILGLSRAKVSLP------SQLASQGII-KNVVGHCLTTNAG 368
G + + G L DGILGL+ +S L QG++ +++ L++N
Sbjct: 102 GLSETEPGSFL-YYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDD 160
Query: 369 GGGYMFLG--HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWAL 426
G + LG + + WVP+ + ++ I ++ + + G + A+
Sbjct: 161 SGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSI-TMDGETIACSGGCQ------AI 213
Query: 427 FDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFK 486
DTG+S A + + SD + SD + + + I S+ D+
Sbjct: 214 VDTGTSLLTGPTSA-------IANIQSDIGASENSDGEMVISCSS---IDSLPDI----- 258
Query: 487 TLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEV--HNGSTIILGDISLRG 544
+ I ++ +SP Y++ + + C +G +V +G ILGD+ +R
Sbjct: 259 --------VFTINGVQYPLSPSAYIL--QDDDSCTSGFEGMDVPTSSGELWILGDVFIRQ 308
Query: 545 QLVVYDNVNKRIGWA 559
V+D N ++G A
Sbjct: 309 YYTVFDRANNKVGLA 323
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 86/400 (21%), Positives = 148/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 66
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ A +
Sbjct: 67 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANI---AAITE 113
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+GILGL+ A+++ P L Q + N+ G L +
Sbjct: 114 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 173
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 174 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 229
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 230 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 285
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 286 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 336
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 337 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 376
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 150/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 61
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ D+
Sbjct: 62 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANIAAITESDK 111
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+N +GILGL+ A+++ P L Q + N+ G L +
Sbjct: 112 --FFING-SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 168
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 169 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 224
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 225 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 280
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 281 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 331
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 332 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 371
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 86/400 (21%), Positives = 148/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 61
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ A +
Sbjct: 62 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANI---AAITE 108
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+GILGL+ A+++ P L Q + N+ G L +
Sbjct: 109 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 168
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 169 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 224
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 225 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 280
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 281 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 331
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 332 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 371
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 86/400 (21%), Positives = 148/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 63
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ A +
Sbjct: 64 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANI---AAITE 110
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+GILGL+ A+++ P L Q + N+ G L +
Sbjct: 111 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 170
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 171 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 226
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 227 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 282
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 283 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 333
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 334 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 373
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 86/400 (21%), Positives = 148/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 66
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ A +
Sbjct: 67 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANI---AAITE 113
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+GILGL+ A+++ P L Q + N+ G L +
Sbjct: 114 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 173
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 174 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 229
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 230 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 285
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 286 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 336
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 337 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 376
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 86/400 (21%), Positives = 148/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 58
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ A +
Sbjct: 59 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPQVTVRANI---AAITE 105
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+GILGL+ A+++ P L Q + N+ G L +
Sbjct: 106 SDKFFIQGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLQQS 165
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 166 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 221
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 222 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 277
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 278 WNI------FPVISLYLMGEVTQQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 328
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 329 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 368
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 86/400 (21%), Positives = 148/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 19 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 62
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ A +
Sbjct: 63 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANI---AAITE 109
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+GILGL+ A+++ P L Q + N+ G L +
Sbjct: 110 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 169
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 170 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 225
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 226 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 281
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 282 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 332
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 333 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 372
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 81/375 (21%), Positives = 146/375 (38%), Gaps = 72/375 (19%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
Y D YF + +G P + + + DTGS W+ P C+
Sbjct: 9 YLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWV----PSVYCS------------------ 46
Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSM-GVLARDELHLTIENGSLTKPNVVF 315
SL P T + E+ + SM G+L D T++ G ++ N +F
Sbjct: 47 -SLACSDHNQFNPDDSSTFEATXQELSITYGTGSMTGILGYD----TVQVGGISDTNQIF 101
Query: 316 GCAYDQQGLLLNTLVKTDGILGLSRAKVSLP------SQLASQGII-KNVVGHCLTTNAG 368
G + + G L DGILGL+ +S L QG++ +++ L++N
Sbjct: 102 GLSETEPGSFL-YYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDD 160
Query: 369 GGGYMFLG--HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWAL 426
G + LG + + WVP+ + ++ I ++ + + G + A+
Sbjct: 161 SGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSI-TMDGETIACSGGCQ------AI 213
Query: 427 FDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFK 486
DTG+S A + + SD + SD + + + I S+ D+
Sbjct: 214 VDTGTSLLTGPTSA-------IANIQSDIGASENSDGEMVISCSS---IDSLPDI----- 258
Query: 487 TLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEV--HNGSTIILGDISLRG 544
+ I ++ +SP Y++ + + C +G +V +G ILGD+ +R
Sbjct: 259 --------VFTIDGVQYPLSPSAYIL--QDDDSCTSGFEGMDVPTSSGELWILGDVFIRQ 308
Query: 545 QLVVYDNVNKRIGWA 559
V+D N ++G A
Sbjct: 309 YYTVFDRANNKVGLA 323
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 86/400 (21%), Positives = 148/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 60
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ A +
Sbjct: 61 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPQVTVRANI---AAITE 107
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+GILGL+ A+++ P L Q + N+ G L +
Sbjct: 108 SDKFFIQGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLQQS 167
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 168 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 223
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 224 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 279
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 280 WNI------FPVISLYLMGEVTQQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 330
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 331 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 370
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 86/400 (21%), Positives = 147/400 (36%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 77
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ A +
Sbjct: 78 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANI---AAITE 124
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+GILGL+ A+++ P L Q + N+ G L +
Sbjct: 125 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 184
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 185 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 240
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 241 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 296
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 297 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 347
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
++G + + G VV+D KRIG+A S C F++
Sbjct: 348 SCGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 387
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 107/269 (39%), Gaps = 47/269 (17%)
Query: 333 DGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN---AGGGGYMF 374
+GILGL+ A+++ P L Q + N+ G L + A GG M
Sbjct: 132 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMI 191
Query: 375 LG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTGS 431
+G H L G W + + Y I+++ L + + ++ D+G+
Sbjct: 192 IGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 247
Query: 432 SYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFK 486
+ K+ + + S+K SS DG L VCW+A +I F
Sbjct: 248 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTPWNI------FP 297
Query: 487 TLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHNGSTIILGDISL 542
++L+ + S + I P+ YL ++ + C + + + ++G + +
Sbjct: 298 VISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMGAVIM 354
Query: 543 RGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
G VV+D KRIG+A S C F++
Sbjct: 355 EGFYVVFDRARKRIGFAVSACHVHDEFRT 383
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 86/400 (21%), Positives = 148/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 14 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 57
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ A +
Sbjct: 58 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPQVTVRANI---AAITE 104
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+GILGL+ A+++ P L Q + N+ G L +
Sbjct: 105 SDKFFIQGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLQQS 164
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 165 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 220
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 221 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 276
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 277 WNI------FPVISLYLMGEVTQQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 327
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 328 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 367
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 150/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 76 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 119
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ D+
Sbjct: 120 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANIAAITESDK 169
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+N +GILGL+ A+++ P L Q + N+ G L +
Sbjct: 170 --FFING-SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 226
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 227 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 282
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 283 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 338
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 339 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 389
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 390 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 429
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 107/269 (39%), Gaps = 47/269 (17%)
Query: 333 DGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN---AGGGGYMF 374
+GILGL+ A+++ P L Q + N+ G L + A GG M
Sbjct: 136 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMI 195
Query: 375 LG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTGS 431
+G H L G W + + Y I+++ L + + ++ D+G+
Sbjct: 196 IGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 251
Query: 432 SYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFK 486
+ K+ + + S+K SS DG L VCW+A +I F
Sbjct: 252 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTPWNI------FP 301
Query: 487 TLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHNGSTIILGDISL 542
++L+ + S + I P+ YL ++ + C + + + ++G + +
Sbjct: 302 VISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMGAVIM 358
Query: 543 RGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
G VV+D KRIG+A S C F++
Sbjct: 359 EGFYVVFDRARKRIGFAVSACHVHDEFRT 387
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 107/269 (39%), Gaps = 47/269 (17%)
Query: 333 DGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN---AGGGGYMF 374
+GILGL+ A+++ P L Q + N+ G L + A GG M
Sbjct: 156 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMI 215
Query: 375 LG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTGS 431
+G H L G W + + Y I+++ L + + ++ D+G+
Sbjct: 216 IGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 271
Query: 432 SYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFK 486
+ K+ + + S+K SS DG L VCW+A +I F
Sbjct: 272 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTPWNI------FP 321
Query: 487 TLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHNGSTIILGDISL 542
++L+ + S + I P+ YL ++ + C + + + ++G + +
Sbjct: 322 VISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMGAVIM 378
Query: 543 RGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
G VV+D KRIG+A S C F++
Sbjct: 379 EGFYVVFDRARKRIGFAVSACHVHDEFRT 407
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 110/280 (39%), Gaps = 24/280 (8%)
Query: 296 RDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGII 355
R + T N +++ NV A LL + + G+ GL+ + ++LPSQ+AS +
Sbjct: 103 RFAANTTDGNKPVSEVNVRVLAACAPSKLLASLPRGSTGVAGLAGSGLALPSQVASAQKV 162
Query: 356 KNVVGHCLTTNAGGGGYMFLGHDLVP----SWGMAWVPMLDSPFMELYHTEILKINYGSS 411
N CL T GG G G +P + M + P++ ++ I ++
Sbjct: 163 PNKFLLCLPT--GGPGVAIFGGGPLPWPQFTQSMDYTPLVAKGGSPAHYISARSIKVENT 220
Query: 412 PLNLGARNSQVGWALFDTGSSYTYFTKQAYSELIASLKEV-----SSDGLVLDASDPTLP 466
+ + R G + T Y + Y L+ + + ++ V A P P
Sbjct: 221 RVPISERALATGGVMLSTRLPYVLLRRDVYRPLVDAFTKALAAQPANGAPVARAVKPVAP 280
Query: 467 --VCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGIL 524
+C+ K + L L GS W + + +V K G C+ +
Sbjct: 281 FELCYDTKTLGNNPGGYWVPNVLLELDGGSDWAMTG-------KNSMVDVKPGTACVAFV 333
Query: 525 D--GSEVHNGS--TIILGDISLRGQLVVYDNVNKRIGWAK 560
+ G + +GS +ILG + ++ +D KR+G+ +
Sbjct: 334 EMKGVDAGDGSAPAVILGGAQMEDFVLDFDMEKKRLGFLR 373
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 107/269 (39%), Gaps = 47/269 (17%)
Query: 333 DGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN---AGGGGYMF 374
+GILGL+ A+++ P L Q + N+ G L + A GG M
Sbjct: 136 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMI 195
Query: 375 LG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTGS 431
+G H L G W + + Y I+++ L + + ++ D+G+
Sbjct: 196 IGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 251
Query: 432 SYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFK 486
+ K+ + + S+K SS DG L VCW+A +I F
Sbjct: 252 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTPWNI------FP 301
Query: 487 TLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHNGSTIILGDISL 542
++L+ + S + I P+ YL ++ + C + + + ++G + +
Sbjct: 302 VISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMGAVIM 358
Query: 543 RGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
G VV+D KRIG+A S C F++
Sbjct: 359 EGFYVVFDRARKRIGFAVSACHVHDEFRT 387
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 150/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 77 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 120
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ D+
Sbjct: 121 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANIAAITESDK 170
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+N +GILGL+ A+++ P L Q + N+ G L +
Sbjct: 171 --FFING-SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 227
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 228 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 283
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 284 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 339
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 340 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 390
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 391 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 430
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 107/269 (39%), Gaps = 47/269 (17%)
Query: 333 DGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN---AGGGGYMF 374
+GILGL+ A+++ P L Q + N+ G L + A GG M
Sbjct: 142 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMI 201
Query: 375 LG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTGS 431
+G H L G W + + Y I+++ L + + ++ D+G+
Sbjct: 202 IGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 257
Query: 432 SYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFK 486
+ K+ + + S+K SS DG L VCW+A +I F
Sbjct: 258 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTPWNI------FP 307
Query: 487 TLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHNGSTIILGDISL 542
++L+ + S + I P+ YL ++ + C + + + ++G + +
Sbjct: 308 VISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMGAVIM 364
Query: 543 RGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
G VV+D KRIG+A S C F++
Sbjct: 365 EGFYVVFDRARKRIGFAVSACHVHDEFRT 393
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 150/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 77 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 120
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ D+
Sbjct: 121 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANIAAITESDK 170
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+N +GILGL+ A+++ P L Q + N+ G L +
Sbjct: 171 --FFING-SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 227
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 228 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 283
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 284 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 339
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 340 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 390
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ ++G + + G VV+D KRIG+A S C F++
Sbjct: 391 STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 430
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 149/400 (37%), Gaps = 76/400 (19%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 77
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ D+
Sbjct: 78 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANIAAITESDK 127
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN 366
+N +GILGL+ A+++ P L Q + N+ G L +
Sbjct: 128 --FFING-SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQS 184
Query: 367 ---AGGGGYMFLG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420
A GG M +G H L G W + + Y I+++ L + +
Sbjct: 185 EVLASVGGSMIIGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEY 240
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPI 475
++ D+G++ K+ + + S+K SS DG L VCW+A
Sbjct: 241 NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTP 296
Query: 476 RSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHN 531
+I F ++L+ + S + I P+ YL ++ + C + +
Sbjct: 297 WNI------FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQS 347
Query: 532 GSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
+ +G + + G VV+D KRIG+A S C F++
Sbjct: 348 STGTCMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRT 387
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 106/269 (39%), Gaps = 47/269 (17%)
Query: 333 DGILGLSRAKVSLPS--------QLASQGIIKNV-------VGHCLTTN---AGGGGYMF 374
+GILGL+ A+++ P L Q + N+ G L + A GG M
Sbjct: 136 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMI 195
Query: 375 LG---HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTGS 431
+G H L G W + + Y I+++ L + + ++ D+G
Sbjct: 196 IGGIDHSLYT--GSLWYTPIRREW--YYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGC 251
Query: 432 SYTYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFK 486
+ K+ + + S+K SS DG L VCW+A +I F
Sbjct: 252 TNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTPWNI------FP 301
Query: 487 TLTLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHNGSTIILGDISL 542
++L+ + S + I P+ YL ++ + C + + + ++G + +
Sbjct: 302 VISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMGAVIM 358
Query: 543 RGQLVVYDNVNKRIGWAKSHCMNPGRFKS 571
G VV+D KRIG+A S C F++
Sbjct: 359 EGFYVVFDRARKRIGFAVSACHVHDEFRT 387
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/377 (22%), Positives = 139/377 (36%), Gaps = 77/377 (20%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
Y D YF + +G PP+ + + DTGS W+ P C K
Sbjct: 8 YLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWV----PSIYC------------------K 45
Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSM-GVLARDELHLTIENGSLTKPNVVF 315
++C R P T + + + SM G L D T+ ++ PN
Sbjct: 46 SNVCKNHHR-FDPRKSSTFRNLGKPLSIHYGTGSMEGFLGYD----TVTVSNIVDPNQTV 100
Query: 316 GCAYDQQGLLLNTLVKTDGILGL------SRAKVSLPSQLASQGIIKNVVGHCLTTNAGG 369
G + +Q G + T + DGILGL S V + + + ++ + G
Sbjct: 101 GLSTEQPGEVF-TYSEFDGILGLAYPSLASEYSVPVFDNMMDRHLVARDLFSVYMDRNGQ 159
Query: 370 GGYMFLGHDLVPSW---GMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVG--W 424
G + LG + PS+ + WVP+ + + + + + IN G + VG
Sbjct: 160 GSMLTLGA-IDPSYYTGSLHWVPVTLQQYWQ-FTVDSVTIN--------GVAVACVGGCQ 209
Query: 425 ALFDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQF 484
A+ DTG+S + ++ ++ + D + L RS+ V
Sbjct: 210 AILDTGTSVLFGPSSDILKIQMAIGATENRYGEFDVNCGNL----------RSMPTV--- 256
Query: 485 FKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHNGSTIILGDISLRG 544
++I + +SP Y SK C G +N ILGD+ +R
Sbjct: 257 ----------VFEINGRDYPLSPSAY--TSKDQGFCTSGFQGD--NNSELWILGDVFIRE 302
Query: 545 QLVVYDNVNKRIGWAKS 561
V+D N R+G AK+
Sbjct: 303 YYSVFDRANNRVGLAKA 319
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 26/102 (25%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ + +G P + + LD DTGS WI C++C G
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWI-ASTLCTNCGSG--------------------- 54
Query: 262 EIQRNHKPGYCETCQQ--CDYEIEYADHSSSMGVLARDELHL 301
Q + P T Q + I Y D SS+ G+LA+D ++L
Sbjct: 55 --QTKYDPNQSSTYQADGRTWSISYGDGSSASGILAKDNVNL 94
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 75/369 (20%), Positives = 131/369 (35%), Gaps = 48/369 (13%)
Query: 217 LDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGY-CETC 275
L +D L W C KG P + +P C+ PG +C
Sbjct: 26 LVLDVAGPLVWSTC--------KGGQPPAE------IPCSSPTCLLANAYPAPGCPAPSC 71
Query: 276 ------QQCD-YEIEYADHSSSMGVLARDELHLTIENGS--LTKPNVVFGCAYDQQGLLL 326
+ C Y + + G L+ +GS ++K NV A LL
Sbjct: 72 GSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLA 131
Query: 327 NTLVKTDGILGLSRAKVSLPSQLASQGIIKNVVGHCLTTNAGGGGYMFLGHDLVP----S 382
+ + G+ GL+ + ++LP+Q+AS + N CL T GG G G VP +
Sbjct: 132 SLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPT--GGPGVAIFGGGPVPWPQFT 189
Query: 383 WGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYS 442
M + P++ ++ I G + + + G + T Y Y
Sbjct: 190 QSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYR 249
Query: 443 ELI----ASLKEVSSDG---LVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSK 495
L+ +L ++G + VC+ K ++ L L GS
Sbjct: 250 PLMDAFTKALAAQHANGAPVARAVVAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSD 309
Query: 496 WQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHNGS----TIILGDISLRGQLVVYDN 551
W + + +V K+G C+ ++ V G +ILG + ++ +D
Sbjct: 310 WTMTG-------KNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDM 362
Query: 552 VNKRIGWAK 560
KR+G+++
Sbjct: 363 EKKRLGFSR 371
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 79/375 (21%), Positives = 144/375 (38%), Gaps = 72/375 (19%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
Y D YF + +G P + + + DTGS W+ P + Y
Sbjct: 9 YLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWV------------------PSV-----YC 45
Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSM-GVLARDELHLTIENGSLTKPNVVF 315
SL P T Q + + SM G+L D T++ G ++ N +F
Sbjct: 46 SSLACTNHNRFNPEDSSTYQSTSETVSITYGTGSMTGILGYD----TVQVGGISDTNQIF 101
Query: 316 GCAYDQQGLLLNTLVKTDGILGLSRAKVS------LPSQLASQGII-KNVVGHCLTTNAG 368
G + + G L DGILGL+ +S + + +QG++ +++ L+ +
Sbjct: 102 GLSETEPGSFL-YYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSADDQ 160
Query: 369 GGGYMFLG--HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWAL 426
G + G + + WVP+ + ++ + + +N + G + A+
Sbjct: 161 SGSVVIFGGIDSSYYTGSLNWVPVTVEGYWQI-TVDSITMNGEAIACAEGCQ------AI 213
Query: 427 FDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFK 486
DTG+S + + + + SD + SD + V A I S+ D+
Sbjct: 214 VDTGTSL-------LTGPTSPIANIQSDIGASENSDGDMVVSCSA---ISSLPDIV---- 259
Query: 487 TLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEV--HNGSTIILGDISLRG 544
+ I ++ + P Y++ S+ C+ G V +G ILGD+ +R
Sbjct: 260 ---------FTINGVQYPVPPSAYILQSEGS--CISGFQGMNVPTESGELWILGDVFIRQ 308
Query: 545 QLVVYDNVNKRIGWA 559
V+D N ++G A
Sbjct: 309 YFTVFDRANNQVGLA 323
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 80/387 (20%), Positives = 141/387 (36%), Gaps = 64/387 (16%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ M VG+PP+ + +DTGS S+ A GA P P + Y
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGS-----------SNFAVGAAP--HPFLHR---YYQRQLS 63
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQ 321
R+ + G Q +E G L D + + + N+ A +
Sbjct: 64 STYRDLRKGVYVPYTQGKWE----------GELGTDLVSIPHGPNVTVRANI---AAITE 110
Query: 322 QGLLLNTLVKTDGILGLSRAKVSLPS--------QLASQGIIKNVVGHCLTTNAGGGGYM 373
+GILGL+ A+++ P L Q + N+ L
Sbjct: 111 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGGGSMIIGG 170
Query: 374 FLGHDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTGSSY 433
+ H L G W + + Y I+++ L + + ++ D+G++
Sbjct: 171 -IDHSLYT--GSLWYTPIRREWY--YEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTN 225
Query: 434 TYFTKQAYSELIASLKEVSS-----DGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTL 488
K+ + + S+K SS DG L VCW+A +I F +
Sbjct: 226 LRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQ----LVCWQAGTTPWNI------FPVI 275
Query: 489 TLHFGSKWQIVSTKFHISPEGYLV----ISKKGNICLGILDGSEVHNGSTIILGDISLRG 544
+L+ + S + I P+ YL ++ + C + + + ++G + + G
Sbjct: 276 SLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMGAVIMEG 332
Query: 545 QLVVYDNVNKRIGWAKSHCMNPGRFKS 571
VV+D KRIG+A S C F++
Sbjct: 333 FYVVFDRARKRIGFAVSACHVHDEFRT 359
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 78/372 (20%), Positives = 144/372 (38%), Gaps = 72/372 (19%)
Query: 199 DGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDS 258
D Y+ + +G PP + + DTGS W+ + CS+ A + +KPR +
Sbjct: 11 DTEYYGVISIGTPPESFKVIFDTGSSNLWVS-SSHCSAQACSNHNKFKPRQSST------ 63
Query: 259 LCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCA 318
Y ET + D + Y G+L +D T+ G + PN G +
Sbjct: 64 ------------YVETGKTVD--LTYGT-GGMRGILGQD----TVSVGGGSDPNQELGES 104
Query: 319 YDQQGLLLNTLVKTDGILGLSRAKVSLPS------QLASQGII-KNVVGHCLTTNAGGGG 371
+ G DGILGL+ ++ + SQ ++ K++ L+ G
Sbjct: 105 QTEPG-PFQAAAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGANGS 163
Query: 372 YMFLG--HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDT 429
+ LG + + + W+P+ + ++ + + +N G + G + A+ DT
Sbjct: 164 EVMLGGVDNSHYTGSIHWIPVTAEKYWQV-ALDGITVN-GQTAACEGCQ------AIVDT 215
Query: 430 GSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLT 489
G+S A + ++ + + G ++ C ++S+ D+ T T
Sbjct: 216 GTSKIVAPVSALANIMKDIGASENQGEMMGN-------CAS----VQSLPDI-----TFT 259
Query: 490 LHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHNGST--IILGDISLRGQLV 547
++ K + P Y I C L S V + ++ I GD+ LR
Sbjct: 260 IN--------GVKQPLPPSAY--IEGDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYT 309
Query: 548 VYDNVNKRIGWA 559
+YD N ++G+A
Sbjct: 310 IYDRTNNKVGFA 321
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 27/149 (18%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
Y + Y+T + +G PP+ + + +DTGS W+ P + C A L+
Sbjct: 10 YLNAQYYTDITLGTPPQNFKVILDTGSSNLWV----PSNECGSLACFLHS---------- 55
Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFG 316
+ +H+ ++ I+Y S G +++D L + G LT P F
Sbjct: 56 -------KYDHEASSSYKANGTEFAIQYG-TGSLEGYISQDTLSI----GDLTIPKQDFA 103
Query: 317 CAYDQQGLLLNTLVKTDGILGLSRAKVSL 345
A + GL K DGILGL +S+
Sbjct: 104 EATSEPGLTF-AFGKFDGILGLGYDTISV 131
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 78/375 (20%), Positives = 144/375 (38%), Gaps = 72/375 (19%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
Y D YF + +G P + + + DTGS W+ P + Y
Sbjct: 9 YLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWV------------------PSV-----YC 45
Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSM-GVLARDELHLTIENGSLTKPNVVF 315
SL P T Q + + SM G+L D T++ G ++ N +F
Sbjct: 46 SSLACTNHNRFNPEDSSTYQSTSETVSITYGTGSMTGILGYD----TVQVGGISDTNQIF 101
Query: 316 GCAYDQQGLLLNTLVKTDGILGLSRAKVS------LPSQLASQGII-KNVVGHCLTTNAG 368
G + + G L DGILGL+ +S + + +QG++ +++ L+ +
Sbjct: 102 GLSETEPGSFL-YYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSADDQ 160
Query: 369 GGGYMFLG--HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWAL 426
G + G + + WVP+ + ++ + + +N + G + A+
Sbjct: 161 SGSVVIFGGIDSSYYTGSLNWVPVTVEGYWQI-TVDSITMNGEAIACAEGCQ------AI 213
Query: 427 FDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFK 486
DTG+S + + + + SD + SD + V A I S+ D+
Sbjct: 214 VDTGTSL-------LTGPTSPIANIQSDIGASENSDGDMVVSCSA---ISSLPDIV---- 259
Query: 487 TLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEV--HNGSTIILGDISLRG 544
+ I ++ + P Y++ S+ C+ G + +G ILGD+ +R
Sbjct: 260 ---------FTINGVQYPVPPSAYILQSEGS--CISGFQGMNLPTESGELWILGDVFIRQ 308
Query: 545 QLVVYDNVNKRIGWA 559
V+D N ++G A
Sbjct: 309 YFTVFDRANNQVGLA 323
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 27/149 (18%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
Y + Y+T + +G PP+ + + +DTGS W+ P + C A L+
Sbjct: 10 YLNAQYYTDITLGTPPQNFKVILDTGSSNLWV----PSNECGSLACFLHS---------- 55
Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFG 316
+ +H+ ++ I+Y S G +++D L + G LT P F
Sbjct: 56 -------KYDHEASSSYKANGTEFAIQYG-TGSLEGYISQDTLSI----GDLTIPKQDFA 103
Query: 317 CAYDQQGLLLNTLVKTDGILGLSRAKVSL 345
A + GL K DGILGL +S+
Sbjct: 104 EATSEPGLTF-AFGKFDGILGLGYDTISV 131
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 27/149 (18%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
Y + Y+T + +G PP+ + + +DTGS W+ P + C A L+
Sbjct: 10 YLNAQYYTDITLGTPPQNFKVILDTGSSNLWV----PSNECGSLACFLHS---------- 55
Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFG 316
+ +H+ ++ I+Y S G +++D L + G LT P F
Sbjct: 56 -------KYDHEASSSYKANGTEFAIQYG-TGSLEGYISQDTLSI----GDLTIPKQDFA 103
Query: 317 CAYDQQGLLLNTLVKTDGILGLSRAKVSL 345
A + GL K DGILGL +S+
Sbjct: 104 EATSEPGLTF-AFGKFDGILGLGYDTISV 131
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 26/102 (25%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y+ + +G P + + LD DTGS WI C++C
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWI-ASTLCTNCG----------------------- 52
Query: 262 EIQRNHKPGYCETCQQ--CDYEIEYADHSSSMGVLARDELHL 301
Q + P T Q + I Y D SS+ G+LA+D ++L
Sbjct: 53 SRQTKYDPNQSSTYQADGRTWSISYGDGSSASGILAKDNVNL 94
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 83/375 (22%), Positives = 149/375 (39%), Gaps = 69/375 (18%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
Y D Y+ + +G PP+ + + DTGS W+ P S C+ R+ Y
Sbjct: 15 YMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWV----PSSKCS---------RLYTACVYH 61
Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFG 316
++K E + Y+ + S G L++D I G +T +FG
Sbjct: 62 KLFDASDSSSYKHNGTE------LTLRYSTGTVS-GFLSQD----IITVGGITVTQ-MFG 109
Query: 317 CAYDQQGLLLNTLVKTDGILGLSRAKVSLP------SQLASQGIIK-NVVGHCLTTNAGG 369
+ L L + DG++G+ + ++ + SQG++K +V ++ G
Sbjct: 110 EVTEMPALPF-MLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSLG 168
Query: 370 GGYMFLGHDLVPSWG-MAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFD 428
G + G D G ++ ++ + ++ ++ ++ GSS L AL D
Sbjct: 169 GQIVLGGSDPQHYEGNFHYINLIKTG---VWQIQMKGVSVGSSTL----LCEDGCLALVD 221
Query: 429 TGSSYTYFTKQAYSELIASL--KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFK 486
TG+SY + + +L+ +L K+ D +V PTLP
Sbjct: 222 TGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPTLP-------------------- 261
Query: 487 TLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEV--HNGSTIILGDISLRG 544
++ H G K +++ ++ E Y SKK +C + ++ G T LG +R
Sbjct: 262 DISFHLGGKEYTLTSADYVFQESY--SSKK--LCTLAIHAMDIPPPTGPTWALGATFIRK 317
Query: 545 QLVVYDNVNKRIGWA 559
+D N RIG+A
Sbjct: 318 FYTEFDRRNNRIGFA 332
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 79/382 (20%), Positives = 143/382 (37%), Gaps = 77/382 (20%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
Y D YF + +G+PP+ + + DTGS W+ C+S A + ++P +
Sbjct: 20 YLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVP-SVYCTSPACKTHSRFQPSQSSTY--- 75
Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFG 316
+PG + I+Y S S G++ D++ + LT FG
Sbjct: 76 ----------SQPGQ-------SFSIQYGTGSLS-GIIGADQVSVE----GLTVVGQQFG 113
Query: 317 CAYDQQGLLLNTLVKT--DGILGLSRAKVSL-------PSQLASQGIIKNVVGHCLTTNA 367
+ + G T V DGILGL +++ + +A + + +++N
Sbjct: 114 ESVTEPG---QTFVDAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNP 170
Query: 368 GGGG---YMFLGHDLVP-SWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVG 423
GG +F G+D S + WVP+ + ++ + I G + + S+
Sbjct: 171 EGGAGSELIFGGYDHSHFSGSLNWVPVTKQAYWQI---ALDNIQVGGTVMFC----SEGC 223
Query: 424 WALFDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQ 483
A+ DTG+S +L ++ DG ++ +
Sbjct: 224 QAIVDTGTSLITGPSDKIKQLQNAIGAAPVDG----------------EYAVEC------ 261
Query: 484 FFKTLTLHFGSKWQIVSTKFHISPEGYLVIS--KKGNICLGILDGSEVH--NGSTIILGD 539
L + + I + +SP Y ++ C G ++H G ILGD
Sbjct: 262 --ANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGD 319
Query: 540 ISLRGQLVVYDNVNKRIGWAKS 561
+ +R V+D N R+G A +
Sbjct: 320 VFIRQFYSVFDRGNNRVGLAPA 341
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYW|B Chain B, Cathepsin D At Ph 7.5
pdb|1LYW|D Chain D, Cathepsin D At Ph 7.5
pdb|1LYW|F Chain F, Cathepsin D At Ph 7.5
pdb|1LYW|H Chain H, Cathepsin D At Ph 7.5
pdb|1LYB|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 241
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 114/271 (42%), Gaps = 46/271 (16%)
Query: 306 GSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVS----LP--SQLASQGII-KNV 358
G + VFG A Q G+ K DGILG++ ++S LP L Q ++ +N+
Sbjct: 1 GGVKVERQVFGEATKQPGITF-IAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNI 59
Query: 359 VGHCLTTN--AGGGGYMFLGHDLVPSW--GMAWVPMLDSPFMELYHTEILKINYGSSPLN 414
L+ + A GG + LG + ++++ + + ++ H + +++ G +
Sbjct: 60 FSFYLSRDPDAQPGGELMLGGTDSKYYKGSLSYLNVTRKAYWQV-HLDQVEVASGLTLCK 118
Query: 415 LGARNSQVGWALFDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFP 474
G A+ DTG+S EL ++ V L + +P + P
Sbjct: 119 EGCE------AIVDTGTSLMVGPVDEVRELQKAIGAVP-----LIQGEYMIPCEKVSTLP 167
Query: 475 IRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGY-LVISKKG-NICLGILDGSEVH-- 530
+TL G K + +SPE Y L +S+ G +CL G ++
Sbjct: 168 ------------AITLKLGGK------GYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPP 209
Query: 531 NGSTIILGDISLRGQLVVYDNVNKRIGWAKS 561
+G ILGD+ + V+D N R+G+A++
Sbjct: 210 SGPLWILGDVFIGRYYTVFDRDNNRVGFAEA 240
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 536 ILGDISLRGQLVVYDNVNKRIGWAK 560
I GD++L+ LVV+D N+R+GWA+
Sbjct: 304 IFGDVALKAALVVFDLGNERLGWAQ 328
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 199 DGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKP 247
D Y T + +G P + LD DTGS W+ S A G + +Y P
Sbjct: 14 DSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSATG-HAIYTP 61
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 67/169 (39%), Gaps = 32/169 (18%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
Y + YF + VG PP+ + + DTGS W+ P + C R YK
Sbjct: 49 YMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWV----PSAKCYFSIACYLHSR------YK 98
Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFG 316
++N KP I+Y S + G + D + + G L + F
Sbjct: 99 AGASSTYKKNGKPA----------AIQYGTGSIA-GYFSEDSVTV----GDLVVKDQEFI 143
Query: 317 CAYDQQGLLLNTLVKTDGILGLSRAKVSLPS------QLASQGIIKNVV 359
A + G+ + K DGILGL ++S+ ++ QG++ + V
Sbjct: 144 EATKEPGITF-LVAKFDGILGLGFKEISVGKAVPVWYKMIEQGLVSDPV 191
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 83/380 (21%), Positives = 148/380 (38%), Gaps = 74/380 (19%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
Y D Y+ + +G PP+ + + DTGS W+ P S C+ R+ Y
Sbjct: 58 YMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWV----PSSKCS---------RLYTACVYH 104
Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFG 316
++K E + Y+ + S G L++D I G +T +FG
Sbjct: 105 KLFDASDSSSYKHNGTELT------LRYSTGTVS-GFLSQD----IITVGGITVTQ-MFG 152
Query: 317 CAYDQQGLLLNTLVKTDGILGLSRAKVSLP------SQLASQGIIKNVV------GHCLT 364
+ L L + DG++G+ + ++ + SQG++K V
Sbjct: 153 EVTEMPALPF-MLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSEN 211
Query: 365 TNAGGGGYMFLGHDLVPSWG-MAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVG 423
+ + GG + G D G ++ ++ + ++ ++ ++ GSS L
Sbjct: 212 SQSLGGQIVLGGSDPQHYEGNFHYINLIKTG---VWQIQMKGVSVGSSTLLC----EDGC 264
Query: 424 WALFDTGSSYTYFTKQAYSELIASL--KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDV 481
AL DTG+SY + + +L+ +L K+ D +V PTLP
Sbjct: 265 LALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPTLP--------------- 309
Query: 482 KQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEV--HNGSTIILGD 539
++ H G K +++ ++ E Y SKK +C + ++ G T LG
Sbjct: 310 -----DISFHLGGKEYTLTSADYVFQESY--SSKK--LCTLAIHAMDIPPPTGPTWALGA 360
Query: 540 ISLRGQLVVYDNVNKRIGWA 559
+R +D N RIG+A
Sbjct: 361 TFIRKFYTEFDRRNNRIGFA 380
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 30/161 (18%)
Query: 199 DGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDS 258
D YF + +G PP+ + + DTGS + W+ +S A A+ +Y+ S
Sbjct: 12 DTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYES----------S 61
Query: 259 LCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCA 318
+ N G I Y S + G ++D + + G L F A
Sbjct: 62 DSSTYKENGTFG----------AIIYGTGSIT-GFFSQDSVTI----GDLVVKEQDFIEA 106
Query: 319 YDQ-QGLLLNTLVKTDGILGLSRAKVSLPS--QLASQGIIK 356
D+ + L+ L DGILGLS +S+P + +QG++K
Sbjct: 107 TDEADNVFLHRLF--DGILGLSFQTISVPVWYNMLNQGLVK 145
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 83/380 (21%), Positives = 148/380 (38%), Gaps = 74/380 (19%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
Y D Y+ + +G PP+ + + DTGS W+ P S C+ R+ Y
Sbjct: 11 YMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWV----PSSKCS---------RLYTACVYH 57
Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFG 316
++K E + Y+ + S G L++D I G +T +FG
Sbjct: 58 KLFDASDSSSYKHNGTELT------LRYSTGTVS-GFLSQD----IITVGGITVTQ-MFG 105
Query: 317 CAYDQQGLLLNTLVKTDGILGLSRAKVSLP------SQLASQGIIKNVV------GHCLT 364
+ L L + DG++G+ + ++ + SQG++K V
Sbjct: 106 EVTEMPALPF-MLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSEN 164
Query: 365 TNAGGGGYMFLGHDLVPSWG-MAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVG 423
+ + GG + G D G ++ ++ + ++ ++ ++ GSS L
Sbjct: 165 SQSLGGQIVLGGSDPQHYEGNFHYINLIKTG---VWQIQMKGVSVGSSTL----LCEDGC 217
Query: 424 WALFDTGSSYTYFTKQAYSELIASL--KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDV 481
AL DTG+SY + + +L+ +L K+ D +V PTLP
Sbjct: 218 LALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPTLP--------------- 262
Query: 482 KQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEV--HNGSTIILGD 539
++ H G K +++ ++ E Y SKK +C + ++ G T LG
Sbjct: 263 -----DISFHLGGKEYTLTSADYVFQESYS--SKK--LCTLAIHAMDIPPPTGPTWALGA 313
Query: 540 ISLRGQLVVYDNVNKRIGWA 559
+R +D N RIG+A
Sbjct: 314 TFIRKFYTEFDRRNNRIGFA 333
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 83/380 (21%), Positives = 148/380 (38%), Gaps = 74/380 (19%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
Y D Y+ + +G PP+ + + DTGS W+ P S C+ R+ Y
Sbjct: 12 YMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWV----PSSKCS---------RLYTACVYH 58
Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFG 316
++K E + Y+ + S G L++D I G +T +FG
Sbjct: 59 KLFDASDSSSYKHNGTELT------LRYSTGTVS-GFLSQD----IITVGGITVTQ-MFG 106
Query: 317 CAYDQQGLLLNTLVKTDGILGLSRAKVSLP------SQLASQGIIKNVV------GHCLT 364
+ L L + DG++G+ + ++ + SQG++K V
Sbjct: 107 EVTEMPALPF-MLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSEN 165
Query: 365 TNAGGGGYMFLGHDLVPSWG-MAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVG 423
+ + GG + G D G ++ ++ + ++ ++ ++ GSS L
Sbjct: 166 SQSLGGQIVLGGSDPQHYEGNFHYINLIKTG---VWQIQMKGVSVGSSTL----LCEDGC 218
Query: 424 WALFDTGSSYTYFTKQAYSELIASL--KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDV 481
AL DTG+SY + + +L+ +L K+ D +V PTLP
Sbjct: 219 LALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPTLP--------------- 263
Query: 482 KQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEV--HNGSTIILGD 539
++ H G K +++ ++ E Y SKK +C + ++ G T LG
Sbjct: 264 -----DISFHLGGKEYTLTSADYVFQESYS--SKK--LCTLAIHAMDIPPPTGPTWALGA 314
Query: 540 ISLRGQLVVYDNVNKRIGWA 559
+R +D N RIG+A
Sbjct: 315 TFIRKFYTEFDRRNNRIGFA 334
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 83/380 (21%), Positives = 148/380 (38%), Gaps = 74/380 (19%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
Y D Y+ + +G PP+ + + DTGS W+ P S C+ R+ Y
Sbjct: 8 YMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWV----PSSKCS---------RLYTACVYH 54
Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFG 316
++K E + Y+ + S G L++D I G +T +FG
Sbjct: 55 KLFDASDSSSYKHNGTELT------LRYSTGTVS-GFLSQD----IITVGGITVTQ-MFG 102
Query: 317 CAYDQQGLLLNTLVKTDGILGLSRAKVSLP------SQLASQGIIKNVV------GHCLT 364
+ L L + DG++G+ + ++ + SQG++K V
Sbjct: 103 EVTEMPALPF-MLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSEN 161
Query: 365 TNAGGGGYMFLGHDLVPSWG-MAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVG 423
+ + GG + G D G ++ ++ + ++ ++ ++ GSS L
Sbjct: 162 SQSLGGQIVLGGSDPQHYEGNFHYINLIKTG---VWQIQMKGVSVGSSTL----LCEDGC 214
Query: 424 WALFDTGSSYTYFTKQAYSELIASL--KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDV 481
AL DTG+SY + + +L+ +L K+ D +V PTLP
Sbjct: 215 LALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPTLP--------------- 259
Query: 482 KQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEV--HNGSTIILGD 539
++ H G K +++ ++ E Y SKK +C + ++ G T LG
Sbjct: 260 -----DISFHLGGKEYTLTSADYVFQESYS--SKK--LCTLAIHAMDIPPPTGPTWALGA 310
Query: 540 ISLRGQLVVYDNVNKRIGWA 559
+R +D N RIG+A
Sbjct: 311 TFIRKFYTEFDRRNNRIGFA 330
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 83/380 (21%), Positives = 148/380 (38%), Gaps = 74/380 (19%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
Y D Y+ + +G PP+ + + DTGS W+ P S C+ R+ Y
Sbjct: 15 YMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWV----PSSKCS---------RLYTACVYH 61
Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFG 316
++K E + Y+ + S G L++D I G +T +FG
Sbjct: 62 KLFDASDSSSYKHNGTELT------LRYSTGTVS-GFLSQD----IITVGGITVTQ-MFG 109
Query: 317 CAYDQQGLLLNTLVKTDGILGLSRAKVSLP------SQLASQGIIKNVV------GHCLT 364
+ L L + DG++G+ + ++ + SQG++K V
Sbjct: 110 EVTEMPALPF-MLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSEN 168
Query: 365 TNAGGGGYMFLGHDLVPSWG-MAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVG 423
+ + GG + G D G ++ ++ + ++ ++ ++ GSS L
Sbjct: 169 SQSLGGQIVLGGSDPQHYEGNFHYINLIKTG---VWQIQMKGVSVGSSTL----LCEDGC 221
Query: 424 WALFDTGSSYTYFTKQAYSELIASL--KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDV 481
AL DTG+SY + + +L+ +L K+ D +V PTLP
Sbjct: 222 LALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPTLP--------------- 266
Query: 482 KQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEV--HNGSTIILGD 539
++ H G K +++ ++ E Y SKK +C + ++ G T LG
Sbjct: 267 -----DISFHLGGKEYTLTSADYVFQESYS--SKK--LCTLAIHAMDIPPPTGPTWALGA 317
Query: 540 ISLRGQLVVYDNVNKRIGWA 559
+R +D N RIG+A
Sbjct: 318 TFIRKFYTEFDRRNNRIGFA 337
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 83/380 (21%), Positives = 148/380 (38%), Gaps = 74/380 (19%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
Y D Y+ + +G PP+ + + DTGS W+ P S C+ R+ Y
Sbjct: 15 YMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWV----PSSKCS---------RLYTACVYH 61
Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFG 316
++K E + Y+ + S G L++D I G +T +FG
Sbjct: 62 KLFDASDSSSYKHNGTELT------LRYSTGTVS-GFLSQD----IITVGGITVTQ-MFG 109
Query: 317 CAYDQQGLLLNTLVKTDGILGLSRAKVSLP------SQLASQGIIKNVV------GHCLT 364
+ L L + DG++G+ + ++ + SQG++K V
Sbjct: 110 EVTEMPALPF-MLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSEN 168
Query: 365 TNAGGGGYMFLGHDLVPSWG-MAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVG 423
+ + GG + G D G ++ ++ + ++ ++ ++ GSS L
Sbjct: 169 SQSLGGQIVLGGSDPQHYEGNFHYINLIKTG---VWQIQMKGVSVGSSTL----LCEDGC 221
Query: 424 WALFDTGSSYTYFTKQAYSELIASL--KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDV 481
AL DTG+SY + + +L+ +L K+ D +V PTLP
Sbjct: 222 LALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPTLP--------------- 266
Query: 482 KQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEV--HNGSTIILGD 539
++ H G K +++ ++ E Y SKK +C + ++ G T LG
Sbjct: 267 -----DISFHLGGKEYTLTSADYVFQESYS--SKK--LCTLAIHAMDIPPPTGPTWALGA 317
Query: 540 ISLRGQLVVYDNVNKRIGWA 559
+R +D N RIG+A
Sbjct: 318 TFIRKFYTEFDRRNNRIGFA 337
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 107/274 (39%), Gaps = 53/274 (19%)
Query: 191 PLRGNIYPDGLYFTYMI-VGNPPRPYYLDMDTGSDLTWI-QCDAPCSSCAKGANPLYKPR 248
P+ ++ + + +T I VG+ + + +DTGS WI + C P ++
Sbjct: 2 PVAVTLHNEAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICI-------PKWRGD 54
Query: 249 MGNILPYKDSLCMEIQRNHKPGYCETCQQCD--YEIEYADHSSSMGVLARDELHLTIENG 306
G+ S + P T Q + ++I+Y D S + G L +D T+ G
Sbjct: 55 KGDFCKSAGS--------YSPASSRTSQNLNTRFDIKYGDGSYAKGKLYKD----TVGIG 102
Query: 307 SLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAK--------VSLPSQLASQGIIKNV 358
++ + +F + GILG+ +LP L +QGII
Sbjct: 103 GVSVRDQLFANVWSTSA--------RKGILGIGFQSGEATEFDYDNLPISLRNQGIIGKA 154
Query: 359 VGHCLTTN---AGGGGYMFLGHDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNL 415
+ L N A G +F G D G ++D P T K+ G +N+
Sbjct: 155 -AYSLYLNSAEASTGQIIFGGIDKAKYSG----SLVDLPI-----TSEKKLTVGLRSVNV 204
Query: 416 GARNSQVGW-ALFDTGSSYTYFTKQAYSELIASL 448
RN L D+G++ +YFT+ ++ ++
Sbjct: 205 RGRNVDANTNVLLDSGTTISYFTRSIVRNILYAI 238
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAK 239
Y D Y+ + +G PP+ + + DTGS W+ P S C++
Sbjct: 15 YMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWV----PSSKCSR 53
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 85/381 (22%), Positives = 131/381 (34%), Gaps = 83/381 (21%)
Query: 208 VGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNH 267
+G P + +YL DTGS TW+ P C + K R
Sbjct: 26 IGTPGQDFYLLFDTGSSDTWV----PHKGCDNSEGCVGK------------------RFF 63
Query: 268 KPGYCETCQQCDY--EIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLL 325
P T ++ DY I Y ++ G+ RD + V G QQ
Sbjct: 64 DPSSSSTFKETDYNLNITYGTGGAN-GIYFRDSI-------------TVGGATVKQQ--- 106
Query: 326 LNTLVKTDGILGLSRAKVSLPSQLASQGIIKNVVGHCLTTNAGGGGYMFLGHDLVPSWGM 385
TL D + G + A+ S S+L GI A G H + G+
Sbjct: 107 --TLAYVDNVSGPT-AEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGL 163
Query: 386 AWVPMLDSPFM---------------------ELYHTEILKINYG----SSPLNLGARNS 420
P+ S +M ++ +T++LK G +P+ G +
Sbjct: 164 ISSPVF-SVYMNTNDGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVT-GVKID 221
Query: 421 QVGWALFDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVD 480
FD ++T T + +S E + DA++ P D
Sbjct: 222 GSDAVSFDGAQAFTIDTGTNFFIAPSSFAEKVVKAALPDATESQQGYT----VPCSKYQD 277
Query: 481 VKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGIL--DGSEVHNGSTIILG 538
K F + GS + IS + L + K G C+ I+ DG G+ I+G
Sbjct: 278 SKTTFSLVLQKSGSSSDTIDVSVPIS-KMLLPVDKSGETCMFIVLPDG-----GNQFIVG 331
Query: 539 DISLRGQLVVYDNVNKRIGWA 559
++ LR + VYD RIG+A
Sbjct: 332 NLFLRFFVNVYDFGKNRIGFA 352
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPR 248
Y D YF + +G PP+ + + DTGS W+ C S A + + PR
Sbjct: 11 YLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVP-SIYCKSNACKNHQRFDPR 61
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPR 248
Y D YF + +G PP+ + + DTGS W+ C S A + + PR
Sbjct: 11 YLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVP-SIYCKSNACKNHQRFDPR 61
>pdb|2PE4|A Chain A, Structure Of Human Hyaluronidase 1, A Hyaluronan
Hydrolyzing Enzyme Involved In Tumor Growth And
Angiogenesis
Length = 424
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 395 FMELYHTEILKINY-GSSPLNLGARNSQVGW------ALFDTGSSYTYFTKQAYSELIAS 447
F + Y+ + L NY G P + A+N Q+GW AL+ + S++
Sbjct: 185 FPDCYNYDFLSPNYTGQCPSGIRAQNDQLGWLWGQSRALYPSIYMPAVLEGTGKSQMYVQ 244
Query: 448 LKEVSSDGLVLDASDPTLPV 467
+ + + + A DP LPV
Sbjct: 245 HRVAEAFRVAVAAGDPNLPV 264
>pdb|1B5F|B Chain B, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|D Chain D, Native Cardosin A From Cynara Cardunculus L
Length = 87
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 496 WQIVSTKFHISPEGYLVISKKGNI--CL-GILDGSEVHNGSTIILGDISLRGQLVVYDNV 552
+ I KF ++PE Y++ KG C+ G G ILGD+ +R V+D
Sbjct: 18 FTIGGKKFGLTPEQYILKVGKGEATQCISGFTAMDATLLGPLWILGDVFMRPYHTVFDYG 77
Query: 553 NKRIGWAKS 561
N +G+A++
Sbjct: 78 NLLVGFAEA 86
>pdb|3OAD|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|B Chain B, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|D Chain D, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 176
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 28/139 (20%)
Query: 425 ALFDTGSSYTYFTKQAYSELIASL--KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVK 482
AL DTG+SY + + +L+ +L K+ D +V PTLP
Sbjct: 53 ALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPTLP---------------- 96
Query: 483 QFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVH--NGSTIILGDI 540
++ H G K +++ ++ E Y SKK +C + ++ G T LG
Sbjct: 97 ----DISFHLGGKEYTLTSADYVFQESY--SSKK--LCTLAIHAMDIPPPTGPTWALGAT 148
Query: 541 SLRGQLVVYDNVNKRIGWA 559
+R +D N RIG+A
Sbjct: 149 FIRKFYTEFDRRNNRIGFA 167
>pdb|1PPL|E Chain E, Crystallographic Analysis Of Transition-State Mimics Bound
To Penicillopepsin: Phosphorus-Containing Peptide
Analogues
pdb|1PPM|E Chain E, Crystallographic Analysis Of Transition-state Mimics Bound
To Penicillopepsin: Phosphorus-containing Peptide
Analogues
pdb|1APT|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APU|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APV|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1APW|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1PPK|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Phosphorous-Containing Peptide
Analogues
pdb|1BXO|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl
Cyclo[(2s)-2-[[(1r)-1-(N-(L-N-(3-
Methylbutanoyl)valyl-L-Aspartyl)amino)-3-Methylbut Yl]
Hydroxyphosphinyloxy]-3-(3-Aminomethyl) Phenylpropanoate
pdb|1BXQ|A Chain A, Acid Proteinase (Penicillopepsin) Complex With Phosphonate
Inhibitor.
pdb|2WEA|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl[cyclo-7[(2r)-((N-Valyl)
Amino)-2-(Hydroxyl-(1s)-1-Methyoxycarbonyl-2-
Phenylethoxy)
Phosphinyloxy-Ethyl]-1-Naphthaleneacetamide], Sodium
Salt
pdb|2WEB|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl(2s)-[1-(((n-formyl)-l-
Valyl)amino-2-(2-naphthyl)ethyl)hydroxyphosphinyloxy]-3-
Phenylpropanoate, Sodium Salt
pdb|2WEC|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl(2s)-[1-(((N-(1-
Naphthaleneacetyl))-L-Valyl)aminomethyl)hydroxy
Phosphinyloxy]-3-Phenylpropanoate, Sodium Salt
pdb|2WED|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Macrocyclic
Inhibitor:methyl[cyclo-7[(2r)-
((n-valyl)amino)-2-(hydroxyl-(1s)-1-methyoxycarbonyl-2-
Phenylethoxy)phosphinyloxy-ethyl]-1-
naphthaleneacetamide], Sodium Salt
pdb|3APP|A Chain A, Structure And Refinement Of Penicillopepsin At 1.8
Angstroms Resolution
Length = 323
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 14/68 (20%)
Query: 503 FHISPEGYLVI----------SKKGNICLGILDGSEVHNGSTI-ILGDISLRGQLVVYDN 551
F +S GY S G+ CLG G + ++G I GDI L+ Q VV+D+
Sbjct: 256 FSVSISGYTATVPGSLINYGPSGDGSTCLG---GIQSNSGIGFSIFGDIFLKSQYVVFDS 312
Query: 552 VNKRIGWA 559
++G+A
Sbjct: 313 DGPQLGFA 320
>pdb|1IBQ|A Chain A, Aspergillopepsin From Aspergillus Phoenicis
pdb|1IBQ|B Chain B, Aspergillopepsin From Aspergillus Phoenicis
Length = 325
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 55/145 (37%), Gaps = 29/145 (20%)
Query: 199 DGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDS 258
D Y T + VG +LD DTGS W+ D SS G + LY P
Sbjct: 13 DEEYLTPVTVGK--STLHLDFDTGSADLWVFSDELPSSEQTG-HDLYTPSS--------- 60
Query: 259 LCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCA 318
GY ++I Y D SS+ G + RD + + G T V +
Sbjct: 61 -----SATKLSGYS-------WDISYGDGSSASGDVYRDTVTV---GGVTTNKQAVEAAS 105
Query: 319 YDQQGLLLNTLVKTDGILGLSRAKV 343
+ +T DG+LGL+ + +
Sbjct: 106 KISSEFVQDT--ANDGLLGLAFSSI 128
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 102/254 (40%), Gaps = 36/254 (14%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWI-QCDAPCSSCAKGANPLYKPRMGNILPYKDSLC 260
Y + VG+ + + +DTGS W+ + C + + G P S
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSAS 73
Query: 261 MEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDEL---HLTIENGSLTKPNVVFGC 317
++ + P ++I Y D SSS G L +D + ++I+N L V
Sbjct: 74 QDL---NTP----------FKIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLAD---VDST 117
Query: 318 AYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGII-KNVVGHCLTT-NAGGGGYMFL 375
+ DQ +L KT+ G + ++P L QG+I KN L + +A G +F
Sbjct: 118 SIDQG--ILGVGYKTNEAGG---SYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQIIFG 172
Query: 376 GHDLVP-SWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTGSSYT 434
G D S + +P+ L+I+ GS ++ N+ L D+G++ T
Sbjct: 173 GVDNAKYSGSLIALPVT--------SDRELRISLGSVEVSGKTINTDNVDVLLDSGTTIT 224
Query: 435 YFTKQAYSELIASL 448
Y + ++I +
Sbjct: 225 YLQQDLADQIIKAF 238
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 101/271 (37%), Gaps = 56/271 (20%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWI-QCDAPCSSCAKGANPLYKPRMGNILPYKDSLC 260
Y + +G+ + + + +DTGS W+ C KPR G +
Sbjct: 14 YAADITIGSNKQKFNVIVDTGSSDLWVPDASVTCD----------KPRPGQSADFCKGKG 63
Query: 261 MEIQRNHKPGYCETCQQCD--YEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCA 318
+ + P T Q + I Y D SSS G L +D + S+TK
Sbjct: 64 I-----YTPKSSTTSQNLGTPFYIGYGDGSSSQGTLYKDTVGF--GGASITKQ------- 109
Query: 319 YDQQGLLLNTLVKT---DGILGLSRAKV-------SLPSQLASQGII-KNVVGHCLTT-N 366
+ + KT GILG+ ++P L +QG+I KN L + N
Sbjct: 110 ------VFADITKTSIPQGILGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYLNSPN 163
Query: 367 AGGGGYMFLGHDLVP-SWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWA 425
A G +F G D S + VP+ + + + + G +
Sbjct: 164 AATGQIIFGGVDKAKYSGSLIAVPVTSDRELRITLNSLKAV---------GKNINGNIDV 214
Query: 426 LFDTGSSYTYFTKQAYSELIASLK-EVSSDG 455
L D+G++ TY + ++I + + E+ SDG
Sbjct: 215 LLDSGTTITYLQQDVAQDIIDAFQAELKSDG 245
>pdb|4FD0|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Baccac_03700) From Bacteroides Caccae Atcc 43185 At
2.07 A Resolution
Length = 404
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 106 TLQDRYKSNN-DDENKESFVFPLYHKFGIREVSQRDAEFKLGRFVDLDGESVVASVNDGI 164
T D YK ++ EN V L F I ++ + + LG +DL G +V +DG
Sbjct: 3 TENDEYKKDSPSAENPAEPVGALLEDFSIEQLPAKTI-YALGENIDLTGLNVTGKYDDGK 61
Query: 165 IRPHK 169
RP K
Sbjct: 62 QRPVK 66
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 99/260 (38%), Gaps = 48/260 (18%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM 261
Y + + VG+ + + +DTGS W+ +G +P + G Y S
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLWVPDSQVSCQAGQGQDPNFCKNEG---TYSPSSSS 70
Query: 262 EIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENG--SLTKPNVVFGCAY 319
Q + P + IEY D ++S G +D TI G S+TK
Sbjct: 71 SSQNLNSP----------FSIEYGDGTTSQGTWYKD----TIGFGGISITK--------- 107
Query: 320 DQQGLLLNTLVKTDGILGLSRAK-------VSLPSQLASQGII-KNVVGHCLTT-NAGGG 370
QQ + + GILG+ ++P L +QGII KN L + A G
Sbjct: 108 -QQFADVTSTSVDQGILGIGYKTHEAEGNYDNVPVTLKNQGIISKNAYSLYLNSRQATSG 166
Query: 371 GYMFLGHDLVPSWG-MAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDT 429
+F G D G + +P+ + + H +K+ +N L D+
Sbjct: 167 QIIFGGVDNAKYSGTLIALPVTSDNELRI-HLNTVKV--AGQSINADVD------VLLDS 217
Query: 430 GSSYTYFTKQAYSELIASLK 449
G++ TY + ++I++
Sbjct: 218 GTTITYLQQGVADQVISAFN 237
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 199 DGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPR 248
D Y T + +G P + LD DTGS W+ +S G +Y P
Sbjct: 14 DDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDG-QTIYTPS 62
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 199 DGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPR 248
D Y T + +G P + LD DTGS W+ +S G +Y P
Sbjct: 14 DDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDG-QTIYTPS 62
>pdb|1WGQ|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Mouse Ethanol Decreased 4 Protein
Length = 109
Score = 28.5 bits (62), Expect = 9.8, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 117 DENKESFVFPLYHKFGIREVSQRDAEFKLGRFVDLDGESVVASVNDG 163
DEN ES VF L HK + V + D R++D E V+ + G
Sbjct: 63 DENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTVSGPSSG 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,277,359
Number of Sequences: 62578
Number of extensions: 714365
Number of successful extensions: 1599
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1388
Number of HSP's gapped (non-prelim): 181
length of query: 577
length of database: 14,973,337
effective HSP length: 104
effective length of query: 473
effective length of database: 8,465,225
effective search space: 4004051425
effective search space used: 4004051425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)