Query 008104
Match_columns 577
No_of_seqs 276 out of 1425
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 19:30:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008104.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008104hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 2.4E-58 5.2E-63 497.9 39.0 339 198-566 81-431 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 8.1E-54 1.8E-58 465.6 34.1 324 188-568 109-453 (482)
3 cd05478 pepsin_A Pepsin A, asp 100.0 6.5E-53 1.4E-57 439.5 33.8 302 197-560 6-317 (317)
4 KOG1339 Aspartyl protease [Pos 100.0 2.3E-52 5.1E-57 448.1 36.1 347 190-564 35-397 (398)
5 cd05490 Cathepsin_D2 Cathepsin 100.0 4E-52 8.6E-57 435.0 34.2 307 197-560 2-325 (325)
6 cd05486 Cathespin_E Cathepsin 100.0 9.3E-52 2E-56 430.6 31.9 300 202-560 1-316 (316)
7 cd05472 cnd41_like Chloroplast 100.0 2.1E-51 4.6E-56 424.5 32.4 294 201-563 1-299 (299)
8 cd05477 gastricsin Gastricsins 100.0 4E-51 8.8E-56 426.1 34.4 304 199-561 1-318 (318)
9 cd05475 nucellin_like Nucellin 100.0 1.8E-51 3.8E-56 419.9 30.8 273 200-563 1-273 (273)
10 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.6E-51 5.6E-56 429.1 32.8 296 200-564 2-326 (326)
11 cd05488 Proteinase_A_fungi Fun 100.0 4.5E-51 9.8E-56 426.2 33.2 304 196-560 5-320 (320)
12 cd05487 renin_like Renin stimu 100.0 4.7E-51 1E-55 427.2 33.0 306 196-561 3-326 (326)
13 cd06098 phytepsin Phytepsin, a 100.0 9.8E-51 2.1E-55 423.1 33.1 297 196-560 5-317 (317)
14 cd05485 Cathepsin_D_like Cathe 100.0 6.3E-50 1.4E-54 419.1 33.3 306 196-560 6-329 (329)
15 PTZ00147 plasmepsin-1; Provisi 100.0 9.1E-50 2E-54 430.8 33.9 309 188-562 128-450 (453)
16 PTZ00013 plasmepsin 4 (PM4); P 100.0 5.1E-49 1.1E-53 424.3 33.8 310 188-562 127-449 (450)
17 cd05473 beta_secretase_like Be 100.0 6.8E-49 1.5E-53 416.9 32.5 326 201-569 3-353 (364)
18 cd05489 xylanase_inhibitor_I_l 100.0 9.6E-48 2.1E-52 406.6 32.2 330 208-561 2-361 (362)
19 cd05476 pepsin_A_like_plant Ch 100.0 1.4E-47 3E-52 389.5 28.8 253 201-563 1-265 (265)
20 cd06097 Aspergillopepsin_like 100.0 3.3E-47 7.1E-52 389.4 27.0 266 202-560 1-278 (278)
21 PF00026 Asp: Eukaryotic aspar 100.0 2.1E-46 4.5E-51 388.8 23.3 302 201-561 1-317 (317)
22 cd05474 SAP_like SAPs, pepsin- 100.0 1.8E-45 3.8E-50 379.1 29.8 271 201-561 2-295 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 7.3E-43 1.6E-47 356.0 29.7 269 202-560 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 99.9 1E-26 2.2E-31 219.5 17.0 159 202-377 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 5.7E-23 1.2E-27 193.4 15.0 155 398-560 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 1.9E-21 4E-26 170.6 12.9 108 204-338 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.0 3.2E-05 6.9E-10 65.3 7.9 93 201-340 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.5 0.032 7E-07 49.9 10.7 95 198-339 8-102 (121)
29 PF13650 Asp_protease_2: Aspar 95.2 0.29 6.4E-06 40.3 10.6 88 205-339 2-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 92.4 1.1 2.5E-05 40.0 9.6 90 200-339 15-106 (124)
31 PF11925 DUF3443: Protein of u 91.4 2.2 4.8E-05 45.0 11.5 53 283-340 83-148 (370)
32 cd05479 RP_DDI RP_DDI; retrope 87.5 3 6.6E-05 37.2 8.1 26 533-558 99-124 (124)
33 cd05484 retropepsin_like_LTR_2 87.5 0.61 1.3E-05 39.1 3.4 28 202-231 1-28 (91)
34 cd06095 RP_RTVL_H_like Retrope 81.7 10 0.00022 31.4 8.2 20 212-231 7-26 (86)
35 PF13975 gag-asp_proteas: gag- 81.5 2.5 5.4E-05 33.9 4.3 32 198-231 5-36 (72)
36 PF08284 RVP_2: Retroviral asp 77.7 5.3 0.00012 36.4 5.7 28 534-561 105-132 (135)
37 COG3577 Predicted aspartyl pro 72.5 20 0.00044 34.9 8.3 93 185-318 91-183 (215)
38 PF00077 RVP: Retroviral aspar 70.2 6.3 0.00014 33.3 4.0 27 203-231 7-33 (100)
39 TIGR02281 clan_AA_DTGA clan AA 67.0 9.8 0.00021 33.9 4.7 35 397-444 10-44 (121)
40 PF13650 Asp_protease_2: Aspar 66.2 6.5 0.00014 32.0 3.2 22 423-444 10-31 (90)
41 TIGR03698 clan_AA_DTGF clan AA 66.0 28 0.0006 30.2 7.3 24 533-556 84-107 (107)
42 PF13975 gag-asp_proteas: gag- 55.6 16 0.00035 29.2 3.6 29 406-444 13-41 (72)
43 cd05484 retropepsin_like_LTR_2 55.5 14 0.0003 30.8 3.4 30 405-444 4-33 (91)
44 cd05483 retropepsin_like_bacte 53.2 19 0.00042 29.5 3.9 22 423-444 14-35 (96)
45 cd05482 HIV_retropepsin_like R 52.8 18 0.00038 30.4 3.5 25 205-231 2-26 (87)
46 PF12384 Peptidase_A2B: Ty3 tr 44.7 27 0.00058 32.9 3.7 29 203-231 34-62 (177)
47 cd06095 RP_RTVL_H_like Retrope 43.3 24 0.00051 29.2 2.9 22 423-444 10-31 (86)
48 KOG0012 DNA damage inducible p 41.9 1.1E+02 0.0023 32.5 7.9 40 519-562 307-347 (380)
49 PF12384 Peptidase_A2B: Ty3 tr 33.3 1.4E+02 0.003 28.3 6.4 24 422-445 45-68 (177)
50 PF02160 Peptidase_A3: Caulifl 32.7 48 0.001 32.3 3.5 28 532-560 90-117 (201)
51 PF00077 RVP: Retroviral aspar 31.8 32 0.00068 28.9 1.9 18 423-440 17-34 (100)
52 PF04202 Mfp-3: Foot protein 3 27.4 34 0.00074 26.9 1.2 17 82-98 6-22 (71)
53 cd05481 retropepsin_like_LTR_1 26.5 62 0.0014 27.3 2.8 23 423-445 11-33 (93)
54 TIGR03698 clan_AA_DTGF clan AA 24.2 88 0.0019 27.1 3.4 27 204-230 2-33 (107)
55 COG5550 Predicted aspartyl pro 24.0 48 0.001 29.7 1.7 25 423-447 27-52 (125)
56 PF12508 DUF3714: Protein of u 23.8 2.7E+02 0.0058 27.2 6.9 67 376-451 82-150 (200)
57 PF09668 Asp_protease: Asparty 20.3 1.6E+02 0.0035 26.4 4.3 29 201-231 24-52 (124)
58 PF09668 Asp_protease: Asparty 20.1 1.1E+02 0.0023 27.6 3.1 28 406-443 29-56 (124)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2.4e-58 Score=497.85 Aligned_cols=339 Identities=27% Similarity=0.523 Sum_probs=277.7
Q ss_pred CCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCcc---ccCCCcchhhhhcCCCCCCCCC
Q 008104 198 PDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNI---LPYKDSLCMEIQRNHKPGYCET 274 (577)
Q Consensus 198 ~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sst---v~c~~~~c~~~~~~~~~~~c~~ 274 (577)
.++.|+++|.||||||++.|+|||||+++||+|. +|..|..+.++.|||++|+| ++|.++.|...... ..|..
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~-~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~---~~c~~ 156 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCK-PCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQ---ASCSD 156 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCC-CCcccccCCCCcccCCCCCCCcccCCCCcccccCCCC---CCCCC
Confidence 4679999999999999999999999999999998 99999988899999999987 99999999765432 45766
Q ss_pred CCCceeEEEeCCCCeEEEEEEEEEEEEeecCC-CccccceEEEEEEccCccccccCCccceEEecCCCCCCChHHHHhcC
Q 008104 275 CQQCDYEIEYADHSSSMGVLARDELHLTIENG-SLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQG 353 (577)
Q Consensus 275 ~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g-~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~S~~~qL~~~g 353 (577)
.+.|.|.+.|+||+.+.|.+++|+|+|+...+ ...++++.|||++...+.+. ...+||||||++.+|+++||...
T Consensus 157 ~~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~---~~~~GilGLG~~~~Sl~sql~~~- 232 (431)
T PLN03146 157 ENTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFD---EKGSGIVGLGGGPLSLISQLGSS- 232 (431)
T ss_pred CCCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCcc---CCCceeEecCCCCccHHHHhhHh-
Confidence 66799999999998889999999999943211 14688999999998876542 35899999999999999999764
Q ss_pred CccceEEEEeecC---CCCCeeEEeCCCCCCCC-CceEEeCccCCCCcceEEEEeEEeeCCcceecCccc---CCCccEE
Q 008104 354 IIKNVVGHCLTTN---AGGGGYMFLGHDLVPSW-GMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARN---SQVGWAL 426 (577)
Q Consensus 354 ~i~~~FSl~L~~~---~~~~G~l~fGd~~~~~g-~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~---~~~~~aI 426 (577)
+.++||+||.+. ....|.|+||+..++.+ ++.|+|++......+|.|.|++|+||++.+.++... .+...+|
T Consensus 233 -~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~i 311 (431)
T PLN03146 233 -IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNII 311 (431)
T ss_pred -hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEE
Confidence 556999999752 24589999998655544 599999985432369999999999999988775432 1235799
Q ss_pred EecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCceeeEEEEE
Q 008104 427 FDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHI 505 (577)
Q Consensus 427 iDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~~l 505 (577)
|||||++++||+++|+++.+++ +++..... ......+..|+.... . ..+|.|+|+|+| +.+.|
T Consensus 312 iDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~--~~~~~~~~~C~~~~~------~--~~~P~i~~~F~G------a~~~l 375 (431)
T PLN03146 312 IDSGTTLTLLPSDFYSELESAVEEAIGGERV--SDPQGLLSLCYSSTS------D--IKLPIITAHFTG------ADVKL 375 (431)
T ss_pred EeCCccceecCHHHHHHHHHHHHHHhccccC--CCCCCCCCccccCCC------C--CCCCeEEEEECC------Ceeec
Confidence 9999999999999999999999 76653211 112223556987421 1 248999999996 89999
Q ss_pred CCCccEEEeCCCceEEEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecCCCCC
Q 008104 506 SPEGYLVISKKGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNP 566 (577)
Q Consensus 506 ~p~~yl~~~~~g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~C~~~ 566 (577)
++++|+++..++.+|+++.... +.||||+.|||++|+|||++++|||||+.+|++.
T Consensus 376 ~~~~~~~~~~~~~~Cl~~~~~~-----~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~~ 431 (431)
T PLN03146 376 QPLNTFVKVSEDLVCFAMIPTS-----SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTKM 431 (431)
T ss_pred CcceeEEEcCCCcEEEEEecCC-----CceEECeeeEeeEEEEEECCCCEEeeecCCcCcC
Confidence 9999999877778999987642 4599999999999999999999999999999863
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=8.1e-54 Score=465.59 Aligned_cols=324 Identities=19% Similarity=0.353 Sum_probs=261.9
Q ss_pred eEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCC
Q 008104 188 SIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNH 267 (577)
Q Consensus 188 ~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~ 267 (577)
...||. +|.|.+|+++|+||||||+|+|+|||||++|||+|. .|..|.|..|+.||+++|+| +...
T Consensus 109 ~~~~l~--n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~-~C~~~~C~~~~~yd~s~SST----------y~~~- 174 (482)
T PTZ00165 109 LQQDLL--NFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSK-ECKSGGCAPHRKFDPKKSST----------YTKL- 174 (482)
T ss_pred cceecc--cccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEch-hcCcccccccCCCCccccCC----------cEec-
Confidence 445554 578999999999999999999999999999999998 89988888899999999995 2110
Q ss_pred CCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCC----
Q 008104 268 KPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV---- 343 (577)
Q Consensus 268 ~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~---- 343 (577)
|.......+.++||+| .+.|.+++|+|+| |++.+++|.||+++..++..+. ...+|||||||++.+
T Consensus 175 ----~~~~~~~~~~i~YGsG-s~~G~l~~DtV~i----g~l~i~~q~FG~a~~~s~~~f~-~~~~DGILGLg~~~~s~~s 244 (482)
T PTZ00165 175 ----KLGDESAETYIQYGTG-ECVLALGKDTVKI----GGLKVKHQSIGLAIEESLHPFA-DLPFDGLVGLGFPDKDFKE 244 (482)
T ss_pred ----CCCCccceEEEEeCCC-cEEEEEEEEEEEE----CCEEEccEEEEEEEeccccccc-cccccceeecCCCcccccc
Confidence 0000112577999999 7889999999999 8899999999999987654332 467899999999753
Q ss_pred -----CChHHHHhcCCc-cceEEEEeecCCCCCeeEEeCCC--CCC--CCCceEEeCccCCCCcceEEEEeEEeeCCcce
Q 008104 344 -----SLPSQLASQGII-KNVVGHCLTTNAGGGGYMFLGHD--LVP--SWGMAWVPMLDSPFMELYHTEILKINYGSSPL 413 (577)
Q Consensus 344 -----S~~~qL~~~g~i-~~~FSl~L~~~~~~~G~l~fGd~--~~~--~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l 413 (577)
+++++|++||+| +++||+||.++...+|+|+||+. .++ .++++|+|+... .+|+|++++|.||++.+
T Consensus 245 ~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~---~yW~i~l~~i~vgg~~~ 321 (482)
T PTZ00165 245 SKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIST---DYWEIEVVDILIDGKSL 321 (482)
T ss_pred cCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcccc---ceEEEEeCeEEECCEEe
Confidence 478999999999 99999999977677899999953 333 468999999875 59999999999999877
Q ss_pred ecCcccCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEE
Q 008104 414 NLGARNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHF 492 (577)
Q Consensus 414 ~i~~~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F 492 (577)
... .....+|+||||+++++|++++++|.+++ +.. .|+.. +.+|+|+|+|
T Consensus 322 ~~~---~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~~---------------~C~~~-----------~~lP~itf~f 372 (482)
T PTZ00165 322 GFC---DRKCKAAIDTGSSLITGPSSVINPLLEKIPLEE---------------DCSNK-----------DSLPRISFVL 372 (482)
T ss_pred eec---CCceEEEEcCCCccEeCCHHHHHHHHHHcCCcc---------------ccccc-----------ccCCceEEEE
Confidence 653 24578999999999999999999999988 321 27543 2379999999
Q ss_pred cccCceeeEEEEECCCccEEEe----CCCceEE-EEEcCCCC-CCCCceEeChhhhccEEEEEECCCCEEEEEecCCCCC
Q 008104 493 GSKWQIVSTKFHISPEGYLVIS----KKGNICL-GILDGSEV-HNGSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNP 566 (577)
Q Consensus 493 ~gg~~~~~~~~~l~p~~yl~~~----~~g~~Cl-~i~~~~~~-~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~C~~~ 566 (577)
++. .+..+.|.|+|++|+++. ..+..|+ ++...... ..++.||||++|||+||+|||.+++|||||+++|+..
T Consensus 373 ~g~-~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~ 451 (482)
T PTZ00165 373 EDV-NGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQS 451 (482)
T ss_pred CCC-CCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCCC
Confidence 862 122358999999999973 3456895 56543311 2346899999999999999999999999999999876
Q ss_pred CC
Q 008104 567 GR 568 (577)
Q Consensus 567 ~~ 568 (577)
..
T Consensus 452 ~~ 453 (482)
T PTZ00165 452 GP 453 (482)
T ss_pred CC
Confidence 65
No 3
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=6.5e-53 Score=439.50 Aligned_cols=302 Identities=22% Similarity=0.423 Sum_probs=253.4
Q ss_pred CCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCCC
Q 008104 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQ 276 (577)
Q Consensus 197 ~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~ 276 (577)
+.+..|+++|.||||+|++.|+|||||+++||+|. .|..|.|..++.|+|++|+| +...
T Consensus 6 ~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~-~C~~~~c~~~~~f~~~~Sst----------~~~~---------- 64 (317)
T cd05478 6 YLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSV-YCSSQACSNHNRFNPRQSST----------YQST---------- 64 (317)
T ss_pred ccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecC-CCCcccccccCcCCCCCCcc----------eeeC----------
Confidence 45889999999999999999999999999999998 89988888899999999985 2222
Q ss_pred CceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCC------CChHHHH
Q 008104 277 QCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV------SLPSQLA 350 (577)
Q Consensus 277 ~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~------S~~~qL~ 350 (577)
.+.|++.|++| .+.|.+++|+|+| |+..++++.|||+....+.+.. ...+|||||||++.. +++++|+
T Consensus 65 ~~~~~~~yg~g-s~~G~~~~D~v~i----g~~~i~~~~fg~~~~~~~~~~~-~~~~dGilGLg~~~~s~~~~~~~~~~L~ 138 (317)
T cd05478 65 GQPLSIQYGTG-SMTGILGYDTVQV----GGISDTNQIFGLSETEPGSFFY-YAPFDGILGLAYPSIASSGATPVFDNMM 138 (317)
T ss_pred CcEEEEEECCc-eEEEEEeeeEEEE----CCEEECCEEEEEEEecCccccc-cccccceeeeccchhcccCCCCHHHHHH
Confidence 47899999999 5899999999999 8888999999999887665432 346899999998653 4899999
Q ss_pred hcCCc-cceEEEEeecCCCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCcccCCCccEEE
Q 008104 351 SQGII-KNVVGHCLTTNAGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALF 427 (577)
Q Consensus 351 ~~g~i-~~~FSl~L~~~~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~~~~~~aIi 427 (577)
++|+| +++||+||.++...+|+|+||+ ..++.|+++|+|+... .+|.|.+++|.||++.+.. .....+||
T Consensus 139 ~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~---~~w~v~l~~v~v~g~~~~~----~~~~~~ii 211 (317)
T cd05478 139 SQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAE---TYWQITVDSVTINGQVVAC----SGGCQAIV 211 (317)
T ss_pred hCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCC---cEEEEEeeEEEECCEEEcc----CCCCEEEE
Confidence 99999 8999999998766789999994 5678899999999764 5999999999999998754 23468999
Q ss_pred ecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCceeeEEEEEC
Q 008104 428 DTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHIS 506 (577)
Q Consensus 428 DSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~~l~ 506 (577)
||||+++++|+++|++|++++ +..... ....++ |+.. ..+|.|+|+|+| +.|.|+
T Consensus 212 DTGts~~~lp~~~~~~l~~~~~~~~~~~------~~~~~~-C~~~-----------~~~P~~~f~f~g------~~~~i~ 267 (317)
T cd05478 212 DTGTSLLVGPSSDIANIQSDIGASQNQN------GEMVVN-CSSI-----------SSMPDVVFTING------VQYPLP 267 (317)
T ss_pred CCCchhhhCCHHHHHHHHHHhCCccccC------CcEEeC-CcCc-----------ccCCcEEEEECC------EEEEEC
Confidence 999999999999999999999 543211 112234 7643 237999999976 899999
Q ss_pred CCccEEEeCCCceEEEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEe
Q 008104 507 PEGYLVISKKGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAK 560 (577)
Q Consensus 507 p~~yl~~~~~g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~ 560 (577)
|++|+.+. +.+|+..+...+ ..+.||||++|||++|+|||++++|||||+
T Consensus 268 ~~~y~~~~--~~~C~~~~~~~~--~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 268 PSAYILQD--QGSCTSGFQSMG--LGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred HHHheecC--CCEEeEEEEeCC--CCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 99999864 678976444331 246799999999999999999999999996
No 4
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-52 Score=448.08 Aligned_cols=347 Identities=32% Similarity=0.631 Sum_probs=283.0
Q ss_pred eeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCC-CCCCCCCCcCCCCCCcc---ccCCCcchhhhhc
Q 008104 190 FPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCS-SCAKGANPLYKPRMGNI---LPYKDSLCMEIQR 265 (577)
Q Consensus 190 ~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~-~C~~~~~~~ydps~Sst---v~c~~~~c~~~~~ 265 (577)
++.....+.++.|+++|.||||||+|.|+|||||+++||+|. +|. .|..+.++.|+|++|+| +.|.++.|.....
T Consensus 35 ~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~-~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~ 113 (398)
T KOG1339|consen 35 LPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCA-PCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQ 113 (398)
T ss_pred cccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccc-cccccccccCCCccCccccccccccCCCCcccccccc
Confidence 334445567789999999999999999999999999999998 998 78765556699999987 9999999987754
Q ss_pred CCCCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCCCC
Q 008104 266 NHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSL 345 (577)
Q Consensus 266 ~~~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~S~ 345 (577)
.|...+.|.|.+.|++|+.+.|++++|+|+|+..+ ....+++.|||+..+.+. +....++|||||||++.+++
T Consensus 114 -----~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~ 186 (398)
T KOG1339|consen 114 -----SCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT-SLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSV 186 (398)
T ss_pred -----CcccCCcCceEEEeCCCCceeEEEEEEEEEEcccc-ccccccEEEEeeecCccc-cccccccceEeecCCCCccc
Confidence 27788899999999998799999999999993211 277788999999999876 33125789999999999999
Q ss_pred hHHHHhcCCccceEEEEeecCCC---CCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCccc-
Q 008104 346 PSQLASQGIIKNVVGHCLTTNAG---GGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARN- 419 (577)
Q Consensus 346 ~~qL~~~g~i~~~FSl~L~~~~~---~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~- 419 (577)
..|+...+...++||+||.+... .+|.|+||+ ...+.+.++|+||+.... .+|.|.|.+|.|+++. .++...
T Consensus 187 ~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~-~~y~v~l~~I~vgg~~-~~~~~~~ 264 (398)
T KOG1339|consen 187 PSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS-TYYQVNLDGISVGGKR-PIGSSLF 264 (398)
T ss_pred eeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC-ccEEEEEeEEEECCcc-CCCcceE
Confidence 99999988877799999998643 589999995 466778899999998863 4999999999999865 333221
Q ss_pred -CCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCc
Q 008104 420 -SQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQ 497 (577)
Q Consensus 420 -~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~ 497 (577)
.+...+|+||||++++||+++|++|.+++ +++. . .......+..|+...... ..+|.|+|+|+++
T Consensus 265 ~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~---~-~~~~~~~~~~C~~~~~~~-------~~~P~i~~~f~~g-- 331 (398)
T KOG1339|consen 265 CTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVS---V-VGTDGEYFVPCFSISTSG-------VKLPDITFHFGGG-- 331 (398)
T ss_pred ecCCCCEEEECCcceeeccHHHHHHHHHHHHhhee---c-cccCCceeeecccCCCCc-------ccCCcEEEEECCC--
Confidence 12488999999999999999999999999 6531 0 000111233588764321 4589999999976
Q ss_pred eeeEEEEECCCccEEEeCCCce-EEEEEcCCCCCCCCceEeChhhhccEEEEEECC-CCEEEEEe--cCCC
Q 008104 498 IVSTKFHISPEGYLVISKKGNI-CLGILDGSEVHNGSTIILGDISLRGQLVVYDNV-NKRIGWAK--SHCM 564 (577)
Q Consensus 498 ~~~~~~~l~p~~yl~~~~~g~~-Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~-~~rIGfA~--~~C~ 564 (577)
+.|.+++++|+++...+.. |++++...+.. ..||||+.||++++++||.. ++|||||+ ..|.
T Consensus 332 ---~~~~l~~~~y~~~~~~~~~~Cl~~~~~~~~~--~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 332 ---AVFSLPPKNYLVEVSDGGGVCLAFFNGMDSG--PLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred ---cEEEeCccceEEEECCCCCceeeEEecCCCC--ceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 9999999999998765555 99988876321 58999999999999999999 99999999 6675
No 5
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=4e-52 Score=435.01 Aligned_cols=307 Identities=24% Similarity=0.420 Sum_probs=247.1
Q ss_pred CCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCC--CCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCC
Q 008104 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSC--AKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCET 274 (577)
Q Consensus 197 ~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C--~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~ 274 (577)
|.+.+|+++|.||||||++.|+|||||+++||+|. .|..| .|..++.|+|++|+| +...
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~C~~~~~y~~~~SsT----------~~~~-------- 62 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSV-HCSLLDIACWLHHKYNSSKSST----------YVKN-------- 62 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcC-CCCCCCccccCcCcCCcccCcc----------eeeC--------
Confidence 56789999999999999999999999999999998 89743 456788999999985 2211
Q ss_pred CCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCC------CChHH
Q 008104 275 CQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV------SLPSQ 348 (577)
Q Consensus 275 ~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~------S~~~q 348 (577)
.|.|.+.|++| .+.|.+++|+|+| |+..++++.|||++.+.+..+. ...++||||||++.. +++++
T Consensus 63 --~~~~~i~Yg~G-~~~G~~~~D~v~~----g~~~~~~~~Fg~~~~~~~~~~~-~~~~dGilGLg~~~~s~~~~~~~~~~ 134 (325)
T cd05490 63 --GTEFAIQYGSG-SLSGYLSQDTVSI----GGLQVEGQLFGEAVKQPGITFI-AAKFDGILGMAYPRISVDGVTPVFDN 134 (325)
T ss_pred --CcEEEEEECCc-EEEEEEeeeEEEE----CCEEEcCEEEEEEeeccCCccc-ceeeeEEEecCCccccccCCCCHHHH
Confidence 47899999999 6899999999999 8888999999999887654322 356899999999754 46789
Q ss_pred HHhcCCc-cceEEEEeecCC--CCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCcccCCCc
Q 008104 349 LASQGII-KNVVGHCLTTNA--GGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVG 423 (577)
Q Consensus 349 L~~~g~i-~~~FSl~L~~~~--~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~~~~~ 423 (577)
|+++|.| +++||+||.++. ..+|+|+||+ ..++.+++.|+|+... .+|.|++++|.||+..... ....
T Consensus 135 l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~---~~w~v~l~~i~vg~~~~~~----~~~~ 207 (325)
T cd05490 135 IMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRK---AYWQIHMDQVDVGSGLTLC----KGGC 207 (325)
T ss_pred HHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcc---eEEEEEeeEEEECCeeeec----CCCC
Confidence 9999999 999999998643 3479999994 5678899999999764 5999999999999864321 2346
Q ss_pred cEEEecccccccccHHHHHHHHHHHHhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCceeeEEE
Q 008104 424 WALFDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKF 503 (577)
Q Consensus 424 ~aIiDSGTt~i~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~ 503 (577)
.+||||||+++++|++++++|.+++.... .....+.++ |+.. ..+|+|+|+|+| +.|
T Consensus 208 ~aiiDSGTt~~~~p~~~~~~l~~~~~~~~-----~~~~~~~~~-C~~~-----------~~~P~i~f~fgg------~~~ 264 (325)
T cd05490 208 EAIVDTGTSLITGPVEEVRALQKAIGAVP-----LIQGEYMID-CEKI-----------PTLPVISFSLGG------KVY 264 (325)
T ss_pred EEEECCCCccccCCHHHHHHHHHHhCCcc-----ccCCCEEec-cccc-----------ccCCCEEEEECC------EEE
Confidence 89999999999999999999999992221 011122334 7643 247999999977 899
Q ss_pred EECCCccEEEeC--CCceEEEEEcCCCC--CCCCceEeChhhhccEEEEEECCCCEEEEEe
Q 008104 504 HISPEGYLVISK--KGNICLGILDGSEV--HNGSTIILGDISLRGQLVVYDNVNKRIGWAK 560 (577)
Q Consensus 504 ~l~p~~yl~~~~--~g~~Cl~i~~~~~~--~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~ 560 (577)
.|+|++|+++.. ...+|+..+...+. .....||||++|||++|+|||.+++|||||+
T Consensus 265 ~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 265 PLTGEDYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred EEChHHeEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 999999998753 23589754432211 1346899999999999999999999999995
No 6
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=9.3e-52 Score=430.60 Aligned_cols=300 Identities=22% Similarity=0.411 Sum_probs=246.3
Q ss_pred EEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCCCCceeE
Q 008104 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDYE 281 (577)
Q Consensus 202 Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~~~~~~ 281 (577)
|+++|+||||||+++|+|||||+++||+|. .|..+.|..++.|+|++|+| +.. ..|.|+
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~-~C~~~~C~~~~~y~~~~SsT----------~~~----------~~~~~~ 59 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSI-YCTSQACTKHNRFQPSESST----------YVS----------NGEAFS 59 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCcccCccceECCCCCcc----------ccc----------CCcEEE
Confidence 899999999999999999999999999998 89876667889999999985 222 258899
Q ss_pred EEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCCC------ChHHHHhcCCc
Q 008104 282 IEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVS------LPSQLASQGII 355 (577)
Q Consensus 282 i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~S------~~~qL~~~g~i 355 (577)
+.|++| .+.|.+++|+|+| |+..++++.|||+..+.+..+. ...+|||||||++..+ ++++|++||+|
T Consensus 60 i~Yg~g-~~~G~~~~D~v~i----g~~~~~~~~fg~~~~~~~~~~~-~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i 133 (316)
T cd05486 60 IQYGTG-SLTGIIGIDQVTV----EGITVQNQQFAESVSEPGSTFQ-DSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLV 133 (316)
T ss_pred EEeCCc-EEEEEeeecEEEE----CCEEEcCEEEEEeeccCccccc-ccccceEeccCchhhccCCCCCHHHHHHhcCCC
Confidence 999999 7899999999999 8888999999999877654332 3578999999997644 68999999999
Q ss_pred -cceEEEEeecCC--CCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCcccCCCccEEEecc
Q 008104 356 -KNVVGHCLTTNA--GGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTG 430 (577)
Q Consensus 356 -~~~FSl~L~~~~--~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~~~~~~aIiDSG 430 (577)
.++||+||.+++ ..+|.|+||+ ..++.|++.|+|+... .+|.|.+++|.|+++.+.. .....+|||||
T Consensus 134 ~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~---~~w~v~l~~i~v~g~~~~~----~~~~~aiiDTG 206 (316)
T cd05486 134 ELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQ---GYWQIQLDNIQVGGTVIFC----SDGCQAIVDTG 206 (316)
T ss_pred CCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCc---eEEEEEeeEEEEecceEec----CCCCEEEECCC
Confidence 899999998643 3589999994 5778899999999865 6999999999999987653 23468999999
Q ss_pred cccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCceeeEEEEECCCc
Q 008104 431 SSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEG 509 (577)
Q Consensus 431 Tt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~~l~p~~ 509 (577)
|+++++|++++++|.+++ +.... ..+.++ |+.. +.+|+|+|+|+| +.++|+|++
T Consensus 207 Ts~~~lP~~~~~~l~~~~~~~~~~-------~~~~~~-C~~~-----------~~~p~i~f~f~g------~~~~l~~~~ 261 (316)
T cd05486 207 TSLITGPSGDIKQLQNYIGATATD-------GEYGVD-CSTL-----------SLMPSVTFTING------IPYSLSPQA 261 (316)
T ss_pred cchhhcCHHHHHHHHHHhCCcccC-------CcEEEe-cccc-----------ccCCCEEEEECC------EEEEeCHHH
Confidence 999999999999998888 43211 112234 7543 247999999976 899999999
Q ss_pred cEEEe--CCCceEEEEEcCCCC--CCCCceEeChhhhccEEEEEECCCCEEEEEe
Q 008104 510 YLVIS--KKGNICLGILDGSEV--HNGSTIILGDISLRGQLVVYDNVNKRIGWAK 560 (577)
Q Consensus 510 yl~~~--~~g~~Cl~i~~~~~~--~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~ 560 (577)
|++.. ....+|+..+...+. ..++.||||++|||++|+|||.+++|||||+
T Consensus 262 y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 262 YTLEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred eEEecccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 99864 345689754332211 2345799999999999999999999999995
No 7
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=2.1e-51 Score=424.53 Aligned_cols=294 Identities=32% Similarity=0.561 Sum_probs=240.3
Q ss_pred eEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCCCCcee
Q 008104 201 LYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDY 280 (577)
Q Consensus 201 ~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~~~~~ 280 (577)
+|+++|.||||||++.|+|||||+++||+|. +| |.|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~-~c-------------------------------------------~~~ 36 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQ-PC-------------------------------------------CLY 36 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCC-CC-------------------------------------------Cee
Confidence 5999999999999999999999999999876 44 348
Q ss_pred EEEeCCCCeEEEEEEEEEEEEeecCCCc-cccceEEEEEEccCccccccCCccceEEecCCCCCCChHHHHhcCCccceE
Q 008104 281 EIEYADHSSSMGVLARDELHLTIENGSL-TKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGIIKNVV 359 (577)
Q Consensus 281 ~i~YgdGs~~~G~~~~D~v~l~~~~g~~-~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~S~~~qL~~~g~i~~~F 359 (577)
.+.|++|+.++|.+++|+|+| |+. .++++.|||+...++.+ ...+||||||+...+++.||..+ .+++|
T Consensus 37 ~i~Yg~Gs~~~G~~~~D~v~i----g~~~~~~~~~Fg~~~~~~~~~----~~~~GilGLg~~~~s~~~ql~~~--~~~~F 106 (299)
T cd05472 37 QVSYGDGSYTTGDLATDTLTL----GSSDVVPGFAFGCGHDNEGLF----GGAAGLLGLGRGKLSLPSQTASS--YGGVF 106 (299)
T ss_pred eeEeCCCceEEEEEEEEEEEe----CCCCccCCEEEECCccCCCcc----CCCCEEEECCCCcchHHHHhhHh--hcCce
Confidence 999999977899999999999 676 78999999999876643 36899999999999999998765 47899
Q ss_pred EEEeecCC-CCCeeEEeCCCCCCCCCceEEeCccCCC-CcceEEEEeEEeeCCcceecCcccCCCccEEEeccccccccc
Q 008104 360 GHCLTTNA-GGGGYMFLGHDLVPSWGMAWVPMLDSPF-MELYHTEILKINYGSSPLNLGARNSQVGWALFDTGSSYTYFT 437 (577)
Q Consensus 360 Sl~L~~~~-~~~G~l~fGd~~~~~g~l~~~pl~~~~~-~~~w~V~l~~I~vgg~~l~i~~~~~~~~~aIiDSGTt~i~lP 437 (577)
|+||.+.. ..+|+|+||+.+...+++.|+|++..+. ..+|.|+|++|+||++.+.++........+||||||++++||
T Consensus 107 S~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp 186 (299)
T cd05472 107 SYCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLP 186 (299)
T ss_pred EEEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecC
Confidence 99998754 6689999996544489999999987542 368999999999999987654322345789999999999999
Q ss_pred HHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCceeeEEEEECCCccEEEe-C
Q 008104 438 KQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVIS-K 515 (577)
Q Consensus 438 ~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~~l~p~~yl~~~-~ 515 (577)
+++|++|.+++ +++... ........++.|+.... .....+|+|+|+|+++ +.|.|++++|++.. .
T Consensus 187 ~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~C~~~~~------~~~~~~P~i~f~f~~g-----~~~~l~~~~y~~~~~~ 253 (299)
T cd05472 187 PSAYAALRDAFRAAMAAY--PRAPGFSILDTCYDLSG------FRSVSVPTVSLHFQGG-----ADVELDASGVLYPVDD 253 (299)
T ss_pred HHHHHHHHHHHHHHhccC--CCCCCCCCCCccCcCCC------CcCCccCCEEEEECCC-----CEEEeCcccEEEEecC
Confidence 99999999999 665421 11122234456875421 1123589999999965 89999999999843 4
Q ss_pred CCceEEEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecCC
Q 008104 516 KGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSHC 563 (577)
Q Consensus 516 ~g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~C 563 (577)
.+.+|+++..... ..+.||||+.|||++|+|||++++|||||+++|
T Consensus 254 ~~~~C~~~~~~~~--~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 254 SSQVCLAFAGTSD--DGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CCCEEEEEeCCCC--CCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 5678998876531 246799999999999999999999999999999
No 8
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=4e-51 Score=426.14 Aligned_cols=304 Identities=23% Similarity=0.404 Sum_probs=250.0
Q ss_pred CceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCCCCc
Q 008104 199 DGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQC 278 (577)
Q Consensus 199 ~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~~~ 278 (577)
|..|+++|.||||||++.|+|||||+++||+|. .|..|.|..++.|+|++|+| +.. ..|
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~-~C~~~~C~~~~~f~~~~SsT----------~~~----------~~~ 59 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSV-LCQSQACTNHTKFNPSQSST----------YST----------NGE 59 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccC-CCCCccccccCCCCcccCCC----------ceE----------CCc
Confidence 458999999999999999999999999999998 89887777889999999985 222 258
Q ss_pred eeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCC------CCChHHHHhc
Q 008104 279 DYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAK------VSLPSQLASQ 352 (577)
Q Consensus 279 ~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~------~S~~~qL~~~ 352 (577)
.|++.|++| .+.|.+++|+|+| |+..++++.|||++...+..+. ....+||||||++. .+++++|+++
T Consensus 60 ~~~~~Yg~G-s~~G~~~~D~i~~----g~~~i~~~~Fg~~~~~~~~~~~-~~~~~GilGLg~~~~s~~~~~~~~~~L~~~ 133 (318)
T cd05477 60 TFSLQYGSG-SLTGIFGYDTVTV----QGIIITNQEFGLSETEPGTNFV-YAQFDGILGLAYPSISAGGATTVMQGMMQQ 133 (318)
T ss_pred EEEEEECCc-EEEEEEEeeEEEE----CCEEEcCEEEEEEEeccccccc-ccceeeEeecCcccccccCCCCHHHHHHhc
Confidence 999999999 6899999999999 8889999999999986553221 34679999999853 5689999999
Q ss_pred CCc-cceEEEEeecC-CCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCcccCCCccEEEe
Q 008104 353 GII-KNVVGHCLTTN-AGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFD 428 (577)
Q Consensus 353 g~i-~~~FSl~L~~~-~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~~~~~~aIiD 428 (577)
|.| +++||+||.++ ...+|.|+||+ ..++.+++.|+|+... .+|.|.+++|.|+++.+.+. .....+|||
T Consensus 134 g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~---~~w~v~l~~i~v~g~~~~~~---~~~~~~iiD 207 (318)
T cd05477 134 NLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSE---TYWQIGIQGFQINGQATGWC---SQGCQAIVD 207 (318)
T ss_pred CCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCc---eEEEEEeeEEEECCEEeccc---CCCceeeEC
Confidence 999 99999999975 34579999994 5678899999999765 59999999999999877542 234679999
Q ss_pred cccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCceeeEEEEECC
Q 008104 429 TGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISP 507 (577)
Q Consensus 429 SGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~~l~p 507 (577)
|||+++++|++++++|++++ +...... .+.++ |+.. ..+|.|+|+|++ +++.|++
T Consensus 208 SGtt~~~lP~~~~~~l~~~~~~~~~~~~------~~~~~-C~~~-----------~~~p~l~~~f~g------~~~~v~~ 263 (318)
T cd05477 208 TGTSLLTAPQQVMSTLMQSIGAQQDQYG------QYVVN-CNNI-----------QNLPTLTFTING------VSFPLPP 263 (318)
T ss_pred CCCccEECCHHHHHHHHHHhCCccccCC------CEEEe-CCcc-----------ccCCcEEEEECC------EEEEECH
Confidence 99999999999999999999 5543211 12233 7643 247999999977 8999999
Q ss_pred CccEEEeCCCceEE-EEEcCCC--CCCCCceEeChhhhccEEEEEECCCCEEEEEec
Q 008104 508 EGYLVISKKGNICL-GILDGSE--VHNGSTIILGDISLRGQLVVYDNVNKRIGWAKS 561 (577)
Q Consensus 508 ~~yl~~~~~g~~Cl-~i~~~~~--~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~ 561 (577)
++|+... ..+|+ ++..... ......||||+.|||++|+|||++++|||||++
T Consensus 264 ~~y~~~~--~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 264 SAYILQN--NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred HHeEecC--CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 9999864 45795 6654211 112357999999999999999999999999985
No 9
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.8e-51 Score=419.95 Aligned_cols=273 Identities=58% Similarity=1.091 Sum_probs=233.2
Q ss_pred ceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCCCCce
Q 008104 200 GLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCD 279 (577)
Q Consensus 200 ~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~~~~ 279 (577)
+.|+++|.||||||++.|+|||||+++||+|..+|..| .|.
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c---------------------------------------~c~ 41 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC---------------------------------------QCD 41 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC---------------------------------------cCc
Confidence 47999999999999999999999999999985367666 267
Q ss_pred eEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCCCChHHHHhcCCccceE
Q 008104 280 YEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGIIKNVV 359 (577)
Q Consensus 280 ~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~S~~~qL~~~g~i~~~F 359 (577)
|++.|+||+.+.|.+++|+|+|...+++..++++.|||+..+.+.+......+|||||||+...++++||.++++|+++|
T Consensus 42 ~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~F 121 (273)
T cd05475 42 YEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVI 121 (273)
T ss_pred cEeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceE
Confidence 99999988899999999999997666667788999999988765443224578999999999999999999999889999
Q ss_pred EEEeecCCCCCeeEEeCCCCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCcccCCCccEEEecccccccccHH
Q 008104 360 GHCLTTNAGGGGYMFLGHDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQ 439 (577)
Q Consensus 360 Sl~L~~~~~~~G~l~fGd~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~~~~~~aIiDSGTt~i~lP~~ 439 (577)
|+||.+ ..+|.|+||+..++.+++.|+|+...+...+|.|++.+|+||++.+. .....+||||||+++++|++
T Consensus 122 s~~l~~--~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~-----~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 122 GHCLSS--NGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG-----GKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred EEEccC--CCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc-----CCCceEEEECCCceEEcCCc
Confidence 999985 45799999988778899999999876333699999999999998432 34578999999999999998
Q ss_pred HHHHHHHHHHhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCceeeEEEEECCCccEEEeCCCce
Q 008104 440 AYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNI 519 (577)
Q Consensus 440 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~~l~p~~yl~~~~~g~~ 519 (577)
+| +|+|+|+|++.+ ..+.++|+|++|++....+..
T Consensus 195 ~y-------------------------------------------~p~i~~~f~~~~--~~~~~~l~~~~y~~~~~~~~~ 229 (273)
T cd05475 195 AY-------------------------------------------FKPLTLKFGKGW--RTRLLEIPPENYLIISEKGNV 229 (273)
T ss_pred cc-------------------------------------------cccEEEEECCCC--ceeEEEeCCCceEEEcCCCCE
Confidence 76 257899998731 127999999999997666779
Q ss_pred EEEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecCC
Q 008104 520 CLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSHC 563 (577)
Q Consensus 520 Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~C 563 (577)
|++++...+...++.||||+.|||++|+|||++++|||||+++|
T Consensus 230 Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 230 CLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred EEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 99998765433356899999999999999999999999999999
No 10
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.6e-51 Score=429.12 Aligned_cols=296 Identities=26% Similarity=0.424 Sum_probs=243.6
Q ss_pred ceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCcc---ccCCCcchhhhhcCCCCCCCCCCC
Q 008104 200 GLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNI---LPYKDSLCMEIQRNHKPGYCETCQ 276 (577)
Q Consensus 200 ~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sst---v~c~~~~c~~~~~~~~~~~c~~~~ 276 (577)
+.|+++|.||||+|++.|+|||||+++||+|. .|..|.++.++.|+|++|+| +.|++..|.. ...|. ++
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~------~~~~~-~~ 73 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCS-QCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY------CLSCL-NN 73 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecC-CCCCcCCCCCCCcCcccccccccccCCCccccc------cCcCC-CC
Confidence 58999999999999999999999999999999 99999988889999999987 8899998841 13454 35
Q ss_pred CceeEEEeCCCCeEEEEEEEEEEEEeecCCCccc-------cceEEEEEEccCccccccCCccceEEecCCCCCC----C
Q 008104 277 QCDYEIEYADHSSSMGVLARDELHLTIENGSLTK-------PNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVS----L 345 (577)
Q Consensus 277 ~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~-------~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~S----~ 345 (577)
.|.|.+.|++|+.+.|.+++|+|+| |+... .++.|||+..+.+.+. ....+||||||+...+ .
T Consensus 74 ~~~~~i~Y~~gs~~~G~~~~D~v~l----g~~~~~~~~~~~~~~~fg~~~~~~~~~~--~~~~~GilGLg~~~~~~~~~~ 147 (326)
T cd06096 74 KCEYSISYSEGSSISGFYFSDFVSF----ESYLNSNSEKESFKKIFGCHTHETNLFL--TQQATGILGLSLTKNNGLPTP 147 (326)
T ss_pred cCcEEEEECCCCceeeEEEEEEEEe----ccCCCCccccccccEEeccCccccCccc--ccccceEEEccCCcccccCch
Confidence 7999999999988999999999999 44433 3578999998876654 3578999999997642 3
Q ss_pred hHHHHhcCCc-c--ceEEEEeecCCCCCeeEEeCC--CCCCC----------CCceEEeCccCCCCcceEEEEeEEeeCC
Q 008104 346 PSQLASQGII-K--NVVGHCLTTNAGGGGYMFLGH--DLVPS----------WGMAWVPMLDSPFMELYHTEILKINYGS 410 (577)
Q Consensus 346 ~~qL~~~g~i-~--~~FSl~L~~~~~~~G~l~fGd--~~~~~----------g~l~~~pl~~~~~~~~w~V~l~~I~vgg 410 (577)
..+|.+++.+ . ++||+||.+ .+|.|+||+ ..++. +++.|+|+... .+|.|.+++|+|++
T Consensus 148 ~~~l~~~~~~~~~~~~FS~~l~~---~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~---~~y~v~l~~i~vg~ 221 (326)
T cd06096 148 IILLFTKRPKLKKDKIFSICLSE---DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK---YYYYVKLEGLSVYG 221 (326)
T ss_pred hHHHHHhcccccCCceEEEEEcC---CCeEEEECccChhhhcccccccccccCCceEEeccCC---ceEEEEEEEEEEcc
Confidence 4456677666 4 999999994 479999995 34444 78999999876 59999999999999
Q ss_pred cceecCcccCCCccEEEecccccccccHHHHHHHHHHHHhhcCCCceecCCCCCCccccccCCCccccccccccceeEEE
Q 008104 411 SPLNLGARNSQVGWALFDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTL 490 (577)
Q Consensus 411 ~~l~i~~~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f 490 (577)
+..... ......+||||||++++||+++|++|.+++ |+|+|
T Consensus 222 ~~~~~~--~~~~~~aivDSGTs~~~lp~~~~~~l~~~~-------------------------------------P~i~~ 262 (326)
T cd06096 222 TTSNSG--NTKGLGMLVDSGSTLSHFPEDLYNKINNFF-------------------------------------PTITI 262 (326)
T ss_pred ccccee--cccCCCEEEeCCCCcccCCHHHHHHHHhhc-------------------------------------CcEEE
Confidence 861111 134578999999999999999999887765 47899
Q ss_pred EEcccCceeeEEEEECCCccEEEeCCCceEEEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecCCC
Q 008104 491 HFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSHCM 564 (577)
Q Consensus 491 ~F~gg~~~~~~~~~l~p~~yl~~~~~g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~C~ 564 (577)
.|+++ ++|+++|++|++...+..+|+++.. . .+.||||++|||++|+|||++++|||||+++|.
T Consensus 263 ~f~~g-----~~~~i~p~~y~~~~~~~~c~~~~~~-~----~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 263 IFENN-----LKIDWKPSSYLYKKESFWCKGGEKS-V----SNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred EEcCC-----cEEEECHHHhccccCCceEEEEEec-C----CCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 99965 8999999999997544445555443 2 357999999999999999999999999999994
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=4.5e-51 Score=426.19 Aligned_cols=304 Identities=27% Similarity=0.444 Sum_probs=250.4
Q ss_pred CCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCC
Q 008104 196 IYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETC 275 (577)
Q Consensus 196 ~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~ 275 (577)
++.+..|+++|.||||+|++.|+|||||+++||+|. .|..+.|..++.|++++|+| +..
T Consensus 5 n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~-~C~~~~C~~~~~y~~~~Sst----------~~~---------- 63 (320)
T cd05488 5 NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSV-KCGSIACFLHSKYDSSASST----------YKA---------- 63 (320)
T ss_pred ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcC-CCCCcccCCcceECCCCCcc----------eee----------
Confidence 356789999999999999999999999999999998 89877777788999999984 222
Q ss_pred CCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCCC------ChHHH
Q 008104 276 QQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVS------LPSQL 349 (577)
Q Consensus 276 ~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~S------~~~qL 349 (577)
+.|.|.+.|++| .+.|.+++|+|+| |+..++++.|||++...+..+. ...+|||||||++..+ .+.+|
T Consensus 64 ~~~~~~~~y~~g-~~~G~~~~D~v~i----g~~~~~~~~f~~a~~~~g~~~~-~~~~dGilGLg~~~~s~~~~~~~~~~l 137 (320)
T cd05488 64 NGTEFKIQYGSG-SLEGFVSQDTLSI----GDLTIKKQDFAEATSEPGLAFA-FGKFDGILGLAYDTISVNKIVPPFYNM 137 (320)
T ss_pred CCCEEEEEECCc-eEEEEEEEeEEEE----CCEEECCEEEEEEecCCCccee-eeeeceEEecCCccccccCCCCHHHHH
Confidence 258899999999 5899999999999 8888999999999877654322 3568999999997654 45689
Q ss_pred HhcCCc-cceEEEEeecCCCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCcccCCCccEE
Q 008104 350 ASQGII-KNVVGHCLTTNAGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWAL 426 (577)
Q Consensus 350 ~~~g~i-~~~FSl~L~~~~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~~~~~~aI 426 (577)
+++|.| +++||+||.+....+|.|+||+ ..++.++++|+|++.. .+|.|++++|.||++.+.. ....++
T Consensus 138 ~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~w~v~l~~i~vg~~~~~~-----~~~~~i 209 (320)
T cd05488 138 INQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRK---AYWEVELEKIGLGDEELEL-----ENTGAA 209 (320)
T ss_pred HhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcC---cEEEEEeCeEEECCEEecc-----CCCeEE
Confidence 999999 9999999998666789999995 4678899999999864 5999999999999987654 246799
Q ss_pred EecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCceeeEEEEE
Q 008104 427 FDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHI 505 (577)
Q Consensus 427 iDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~~l 505 (577)
|||||+++++|++++++|.+++ +.... ...+.++ |+.. ..+|.|+|+|+| +++.|
T Consensus 210 vDSGtt~~~lp~~~~~~l~~~~~~~~~~------~~~~~~~-C~~~-----------~~~P~i~f~f~g------~~~~i 265 (320)
T cd05488 210 IDTGTSLIALPSDLAEMLNAEIGAKKSW------NGQYTVD-CSKV-----------DSLPDLTFNFDG------YNFTL 265 (320)
T ss_pred EcCCcccccCCHHHHHHHHHHhCCcccc------CCcEEee-cccc-----------ccCCCEEEEECC------EEEEE
Confidence 9999999999999999999988 44321 1122244 7643 247999999986 89999
Q ss_pred CCCccEEEeCCCceEEEEEcCCCC--CCCCceEeChhhhccEEEEEECCCCEEEEEe
Q 008104 506 SPEGYLVISKKGNICLGILDGSEV--HNGSTIILGDISLRGQLVVYDNVNKRIGWAK 560 (577)
Q Consensus 506 ~p~~yl~~~~~g~~Cl~i~~~~~~--~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~ 560 (577)
+|++|+++. ..+|++.+...+. ..+..||||+.|||++|+|||.+++|||||+
T Consensus 266 ~~~~y~~~~--~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 266 GPFDYTLEV--SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CHHHheecC--CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 999999853 3579766554321 1235799999999999999999999999996
No 12
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=4.7e-51 Score=427.16 Aligned_cols=306 Identities=23% Similarity=0.414 Sum_probs=247.8
Q ss_pred CCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCC--CCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCC
Q 008104 196 IYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSC--AKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCE 273 (577)
Q Consensus 196 ~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C--~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~ 273 (577)
++.+..|+++|.||||+|+++|+|||||+++||+|. .|..| .|..++.|+|++|+| +...
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~~~~~y~~~~SsT----------~~~~------- 64 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSS-KCSPLYTACVTHNLYDASDSST----------YKEN------- 64 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccC-CCcCcchhhcccCcCCCCCCee----------eeEC-------
Confidence 456889999999999999999999999999999998 89764 566788999999985 2221
Q ss_pred CCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCC------CChH
Q 008104 274 TCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV------SLPS 347 (577)
Q Consensus 274 ~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~------S~~~ 347 (577)
.|.|++.|++| .+.|.+++|+|+| |+..+ ++.||++.......+. ...+|||||||++.. ++++
T Consensus 65 ---~~~~~~~Yg~g-~~~G~~~~D~v~~----g~~~~-~~~fg~~~~~~~~~~~-~~~~dGilGLg~~~~s~~~~~~~~~ 134 (326)
T cd05487 65 ---GTEFTIHYASG-TVKGFLSQDIVTV----GGIPV-TQMFGEVTALPAIPFM-LAKFDGVLGMGYPKQAIGGVTPVFD 134 (326)
T ss_pred ---CEEEEEEeCCc-eEEEEEeeeEEEE----CCEEe-eEEEEEEEeccCCccc-eeecceEEecCChhhcccCCCCHHH
Confidence 58899999999 6999999999999 77766 4789999875432111 346899999998654 4788
Q ss_pred HHHhcCCc-cceEEEEeecCC--CCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCcccCCC
Q 008104 348 QLASQGII-KNVVGHCLTTNA--GGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQV 422 (577)
Q Consensus 348 qL~~~g~i-~~~FSl~L~~~~--~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~~~~ 422 (577)
+|++||.| +++||+||.++. ..+|.|+||+ ..++.|+++|+|+... .+|+|++++|.|+++.+.. ...
T Consensus 135 ~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~---~~w~v~l~~i~vg~~~~~~----~~~ 207 (326)
T cd05487 135 NIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKT---GFWQIQMKGVSVGSSTLLC----EDG 207 (326)
T ss_pred HHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcC---ceEEEEecEEEECCEEEec----CCC
Confidence 99999999 999999999753 4589999994 5778899999999764 5999999999999987653 234
Q ss_pred ccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCceeeE
Q 008104 423 GWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVST 501 (577)
Q Consensus 423 ~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~ 501 (577)
..+||||||+++++|.++++++++++ +.... ..+.++ |+.. ..+|+|+|+|++ .
T Consensus 208 ~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~~-------~~y~~~-C~~~-----------~~~P~i~f~fgg------~ 262 (326)
T cd05487 208 CTAVVDTGASFISGPTSSISKLMEALGAKERL-------GDYVVK-CNEV-----------PTLPDISFHLGG------K 262 (326)
T ss_pred CEEEECCCccchhCcHHHHHHHHHHhCCcccC-------CCEEEe-cccc-----------CCCCCEEEEECC------E
Confidence 78999999999999999999999999 44321 112234 7653 247999999976 8
Q ss_pred EEEECCCccEEEeCC--CceEE-EEEcCCCC-CCCCceEeChhhhccEEEEEECCCCEEEEEec
Q 008104 502 KFHISPEGYLVISKK--GNICL-GILDGSEV-HNGSTIILGDISLRGQLVVYDNVNKRIGWAKS 561 (577)
Q Consensus 502 ~~~l~p~~yl~~~~~--g~~Cl-~i~~~~~~-~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~ 561 (577)
.++|++++|+++..+ +..|+ ++...... ..++.||||++|||++|+|||++++|||||++
T Consensus 263 ~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 263 EYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred EEEeCHHHhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 999999999997533 56896 45433211 23458999999999999999999999999985
No 13
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=9.8e-51 Score=423.14 Aligned_cols=297 Identities=25% Similarity=0.412 Sum_probs=240.2
Q ss_pred CCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCC-CCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCC
Q 008104 196 IYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCS-SCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCET 274 (577)
Q Consensus 196 ~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~-~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~ 274 (577)
++.+..|+++|.||||||++.|+|||||+++||+|. .|. ...|..++.|+|++|+| +...
T Consensus 5 n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~C~~~~~C~~~~~y~~~~SsT----------~~~~-------- 65 (317)
T cd06098 5 NYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSS-KCYFSIACYFHSKYKSSKSST----------YKKN-------- 65 (317)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEECCCccceEEecC-CCCCCccccccCcCCcccCCC----------cccC--------
Confidence 467889999999999999999999999999999998 895 22345678999999985 2111
Q ss_pred CCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCC------CChHH
Q 008104 275 CQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV------SLPSQ 348 (577)
Q Consensus 275 ~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~------S~~~q 348 (577)
.+.+.+.|++| .+.|.+++|+|+| |+..++++.||+++.+.+..+. ...+|||||||++.. +++.+
T Consensus 66 --~~~~~i~Yg~G-~~~G~~~~D~v~i----g~~~v~~~~f~~~~~~~~~~~~-~~~~dGilGLg~~~~s~~~~~~~~~~ 137 (317)
T cd06098 66 --GTSASIQYGTG-SISGFFSQDSVTV----GDLVVKNQVFIEATKEPGLTFL-LAKFDGILGLGFQEISVGKAVPVWYN 137 (317)
T ss_pred --CCEEEEEcCCc-eEEEEEEeeEEEE----CCEEECCEEEEEEEecCCcccc-ccccceeccccccchhhcCCCCHHHH
Confidence 46789999999 6899999999999 8888999999999876543222 357899999999654 36789
Q ss_pred HHhcCCc-cceEEEEeecCC--CCCeeEEeC--CCCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCcccCCCc
Q 008104 349 LASQGII-KNVVGHCLTTNA--GGGGYMFLG--HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVG 423 (577)
Q Consensus 349 L~~~g~i-~~~FSl~L~~~~--~~~G~l~fG--d~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~~~~~ 423 (577)
|+++|+| +++||+||.+.. ..+|.|+|| |..++.|+++|+|+... .+|.|++++|.|+++.+... ....
T Consensus 138 l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~---~~w~v~l~~i~v~g~~~~~~---~~~~ 211 (317)
T cd06098 138 MVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRK---GYWQFEMGDVLIGGKSTGFC---AGGC 211 (317)
T ss_pred HHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcC---cEEEEEeCeEEECCEEeeec---CCCc
Confidence 9999999 899999998643 358999999 56788899999999765 59999999999999876553 2457
Q ss_pred cEEEecccccccccHHHHHHHHHHHHhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCceeeEEE
Q 008104 424 WALFDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKF 503 (577)
Q Consensus 424 ~aIiDSGTt~i~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~ 503 (577)
.+||||||+++++|+++++++. +.++ |+... .+|+|+|+|+| +.|
T Consensus 212 ~aivDTGTs~~~lP~~~~~~i~-----------------~~~~-C~~~~-----------~~P~i~f~f~g------~~~ 256 (317)
T cd06098 212 AAIADSGTSLLAGPTTIVTQIN-----------------SAVD-CNSLS-----------SMPNVSFTIGG------KTF 256 (317)
T ss_pred EEEEecCCcceeCCHHHHHhhh-----------------ccCC-ccccc-----------cCCcEEEEECC------EEE
Confidence 8999999999999998766543 1233 76432 37999999976 899
Q ss_pred EECCCccEEEeCC--CceEEEEEcCCCC--CCCCceEeChhhhccEEEEEECCCCEEEEEe
Q 008104 504 HISPEGYLVISKK--GNICLGILDGSEV--HNGSTIILGDISLRGQLVVYDNVNKRIGWAK 560 (577)
Q Consensus 504 ~l~p~~yl~~~~~--g~~Cl~i~~~~~~--~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~ 560 (577)
.|+|++|+++..+ ...|++.+...+. ..+..||||++|||++|+|||++++|||||+
T Consensus 257 ~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 257 ELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred EEChHHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 9999999987532 3589654332211 1345799999999999999999999999995
No 14
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=6.3e-50 Score=419.12 Aligned_cols=306 Identities=22% Similarity=0.386 Sum_probs=247.2
Q ss_pred CCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCC--CCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCC
Q 008104 196 IYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSC--AKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCE 273 (577)
Q Consensus 196 ~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C--~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~ 273 (577)
++.+..|+++|.||||+|++.|+|||||+++||+|. .|..| .|..++.|+|++|+| +..
T Consensus 6 n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~~~~~y~~~~Sst----------~~~-------- 66 (329)
T cd05485 6 NYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSK-KCSWTNIACLLHNKYDSTKSST----------YKK-------- 66 (329)
T ss_pred eccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCCCccccCCCeECCcCCCC----------eEE--------
Confidence 467889999999999999999999999999999998 89743 345678999999985 222
Q ss_pred CCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCCC------ChH
Q 008104 274 TCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVS------LPS 347 (577)
Q Consensus 274 ~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~S------~~~ 347 (577)
..|.|.+.|++| .+.|.+++|+|+| |+..++++.|||+..+.+..+. ...++||||||+...+ ++.
T Consensus 67 --~~~~~~i~Y~~g-~~~G~~~~D~v~i----g~~~~~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~s~~~~~p~~~ 138 (329)
T cd05485 67 --NGTEFAIQYGSG-SLSGFLSTDTVSV----GGVSVKGQTFAEAINEPGLTFV-AAKFDGILGMGYSSISVDGVVPVFY 138 (329)
T ss_pred --CCeEEEEEECCc-eEEEEEecCcEEE----CCEEECCEEEEEEEecCCcccc-ccccceEEEcCCccccccCCCCHHH
Confidence 158899999999 5899999999999 8888999999999877553221 3568999999997654 578
Q ss_pred HHHhcCCc-cceEEEEeecCC--CCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCcccCCC
Q 008104 348 QLASQGII-KNVVGHCLTTNA--GGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQV 422 (577)
Q Consensus 348 qL~~~g~i-~~~FSl~L~~~~--~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~~~~ 422 (577)
+|++||+| +++||+||.++. ..+|+|+||+ ..++.|+++|+|+... .+|.|.+++|.|+++.+. ...
T Consensus 139 ~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~v~~~~i~v~~~~~~-----~~~ 210 (329)
T cd05485 139 NMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRK---GYWQFKMDSVSVGEGEFC-----SGG 210 (329)
T ss_pred HHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCc---eEEEEEeeEEEECCeeec-----CCC
Confidence 99999999 899999998653 3579999995 4677899999999764 699999999999998653 234
Q ss_pred ccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCceeeE
Q 008104 423 GWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVST 501 (577)
Q Consensus 423 ~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~ 501 (577)
..+||||||+++++|++++++|.+++ +.... ...+.++ |+.. ..+|+|+|+|++ +
T Consensus 211 ~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~------~~~~~~~-C~~~-----------~~~p~i~f~fgg------~ 266 (329)
T cd05485 211 CQAIADTGTSLIAGPVDEIEKLNNAIGAKPII------GGEYMVN-CSAI-----------PSLPDITFVLGG------K 266 (329)
T ss_pred cEEEEccCCcceeCCHHHHHHHHHHhCCcccc------CCcEEEe-cccc-----------ccCCcEEEEECC------E
Confidence 68999999999999999999999988 43210 1112234 7643 237999999987 8
Q ss_pred EEEECCCccEEEeC--CCceEEE-EEcCCC-CCCCCceEeChhhhccEEEEEECCCCEEEEEe
Q 008104 502 KFHISPEGYLVISK--KGNICLG-ILDGSE-VHNGSTIILGDISLRGQLVVYDNVNKRIGWAK 560 (577)
Q Consensus 502 ~~~l~p~~yl~~~~--~g~~Cl~-i~~~~~-~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~ 560 (577)
.+.|++++|+++.. ...+|+. +..... ...++.||||++|||++|+|||++++|||||.
T Consensus 267 ~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 267 SFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred EeEEChHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 99999999999753 2468975 443221 12345799999999999999999999999984
No 15
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=9.1e-50 Score=430.81 Aligned_cols=309 Identities=20% Similarity=0.333 Sum_probs=247.1
Q ss_pred eEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCC
Q 008104 188 SIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNH 267 (577)
Q Consensus 188 ~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~ 267 (577)
..+||. ++.+.+|+++|+||||||++.|+|||||+++||+|. .|..|.|..++.|||++|+| +...
T Consensus 128 ~~v~L~--n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~-~C~~~~C~~~~~yd~s~SsT----------~~~~- 193 (453)
T PTZ00147 128 DNVELK--DLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSI-KCTTEGCETKNLYDSSKSKT----------YEKD- 193 (453)
T ss_pred Ceeecc--ccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeec-CCCcccccCCCccCCccCcc----------eEEC-
Confidence 455664 346779999999999999999999999999999998 89988888899999999985 2221
Q ss_pred CCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCcc-ccccCCccceEEecCCCCCC--
Q 008104 268 KPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGL-LLNTLVKTDGILGLSRAKVS-- 344 (577)
Q Consensus 268 ~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~-~~~~~~~~dGIlGLg~~~~S-- 344 (577)
.+.|++.|++| .+.|.+++|+|+| |+.+++ ..|+++....+. .......+|||||||++.++
T Consensus 194 ---------~~~f~i~Yg~G-svsG~~~~DtVti----G~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~ 258 (453)
T PTZ00147 194 ---------GTKVEMNYVSG-TVSGFFSKDLVTI----GNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIG 258 (453)
T ss_pred ---------CCEEEEEeCCC-CEEEEEEEEEEEE----CCEEEE-EEEEEEEeccCcccccccccccceecccCCccccc
Confidence 57899999999 6999999999999 788777 579988876542 11124578999999997653
Q ss_pred ----ChHHHHhcCCc-cceEEEEeecCCCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCc
Q 008104 345 ----LPSQLASQGII-KNVVGHCLTTNAGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGA 417 (577)
Q Consensus 345 ----~~~qL~~~g~i-~~~FSl~L~~~~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~ 417 (577)
++.+|++||.| +++||+||.+....+|.|+||+ ..++.|++.|+|+... .+|.|.++ +.+++..
T Consensus 259 ~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~---~~W~V~l~-~~vg~~~----- 329 (453)
T PTZ00147 259 SVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHD---LYWQVDLD-VHFGNVS----- 329 (453)
T ss_pred cCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCC---ceEEEEEE-EEECCEe-----
Confidence 67899999999 8999999997666789999995 5678899999999754 69999998 5776642
Q ss_pred ccCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccC
Q 008104 418 RNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKW 496 (577)
Q Consensus 418 ~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~ 496 (577)
.....+||||||+++++|+++++++++++ +.... ....... .|+.. .+|+|+|.|+|
T Consensus 330 --~~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~~-----~~~~y~~-~C~~~------------~lP~~~f~f~g-- 387 (453)
T PTZ00147 330 --SEKANVIVDSGTSVITVPTEFLNKFVESLDVFKVP-----FLPLYVT-TCNNT------------KLPTLEFRSPN-- 387 (453)
T ss_pred --cCceeEEECCCCchhcCCHHHHHHHHHHhCCeecC-----CCCeEEE-eCCCC------------CCCeEEEEECC--
Confidence 23478999999999999999999999998 42210 0011112 37642 37999999987
Q ss_pred ceeeEEEEECCCccEEEeC--CCceEEE-EEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecC
Q 008104 497 QIVSTKFHISPEGYLVISK--KGNICLG-ILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSH 562 (577)
Q Consensus 497 ~~~~~~~~l~p~~yl~~~~--~g~~Cl~-i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~ 562 (577)
..++|+|++|+.+.. ....|+. ++... . ..+.||||++|||++|+|||.+++|||||+++
T Consensus 388 ----~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~-~-~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 388 ----KVYTLEPEYYLQPIEDIGSALCMLNIIPID-L-EKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred ----EEEEECHHHheeccccCCCcEEEEEEEECC-C-CCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 799999999997532 3357964 55432 1 23579999999999999999999999999986
No 16
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=5.1e-49 Score=424.25 Aligned_cols=310 Identities=19% Similarity=0.338 Sum_probs=243.8
Q ss_pred eEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCC
Q 008104 188 SIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNH 267 (577)
Q Consensus 188 ~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~ 267 (577)
..+||. ++.+.+|+++|.||||+|++.|+|||||+++||+|. .|..+.|..++.|+|++|+| +..
T Consensus 127 ~~~~l~--d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~-~C~~~~C~~~~~yd~s~SsT----------~~~-- 191 (450)
T PTZ00013 127 DVIELD--DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK-KCDSIGCSIKNLYDSSKSKS----------YEK-- 191 (450)
T ss_pred Cceeee--ccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecc-cCCccccccCCCccCccCcc----------ccc--
Confidence 345554 345679999999999999999999999999999998 89877778889999999985 222
Q ss_pred CCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCcc-ccccCCccceEEecCCCCC---
Q 008104 268 KPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGL-LLNTLVKTDGILGLSRAKV--- 343 (577)
Q Consensus 268 ~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~-~~~~~~~~dGIlGLg~~~~--- 343 (577)
..|.|++.|++| .+.|.+++|+|+| |+.+++ ..|+++....+. .......+|||||||++..
T Consensus 192 --------~~~~~~i~YG~G-sv~G~~~~Dtv~i----G~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~ 257 (450)
T PTZ00013 192 --------DGTKVDITYGSG-TVKGFFSKDLVTL----GHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIG 257 (450)
T ss_pred --------CCcEEEEEECCc-eEEEEEEEEEEEE----CCEEEc-cEEEEEEeccccccceecccccceecccCCccccc
Confidence 157899999999 6999999999999 787776 578888765321 0011346899999999764
Q ss_pred ---CChHHHHhcCCc-cceEEEEeecCCCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCc
Q 008104 344 ---SLPSQLASQGII-KNVVGHCLTTNAGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGA 417 (577)
Q Consensus 344 ---S~~~qL~~~g~i-~~~FSl~L~~~~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~ 417 (577)
+++.+|++||.| +++||+||.+....+|.|+||+ ..++.|++.|+|+... .+|.|.++ +.+|....
T Consensus 258 ~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~---~yW~I~l~-v~~G~~~~---- 329 (450)
T PTZ00013 258 SIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHD---LYWQIDLD-VHFGKQTM---- 329 (450)
T ss_pred cCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcC---ceEEEEEE-EEECceec----
Confidence 468899999999 8999999997656789999995 5778899999999754 59999998 66664322
Q ss_pred ccCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccC
Q 008104 418 RNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKW 496 (577)
Q Consensus 418 ~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~ 496 (577)
....+||||||+++++|+++++++++++ +.... ....+.. .|+.. .+|+|+|.|+|
T Consensus 330 ---~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~~-----~~~~y~~-~C~~~------------~lP~i~F~~~g-- 386 (450)
T PTZ00013 330 ---QKANVIVDSGTTTITAPSEFLNKFFANLNVIKVP-----FLPFYVT-TCDNK------------EMPTLEFKSAN-- 386 (450)
T ss_pred ---cccceEECCCCccccCCHHHHHHHHHHhCCeecC-----CCCeEEe-ecCCC------------CCCeEEEEECC--
Confidence 2467999999999999999999999988 43210 0011122 37542 37999999987
Q ss_pred ceeeEEEEECCCccEEEe--CCCceEEEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecC
Q 008104 497 QIVSTKFHISPEGYLVIS--KKGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSH 562 (577)
Q Consensus 497 ~~~~~~~~l~p~~yl~~~--~~g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~ 562 (577)
.+++|+|++|+.+. .++..|+..+...+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 387 ----~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~-~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 387 ----NTYTLEPEYYMNPLLDVDDTLCMITMLPVDI-DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred ----EEEEECHHHheehhccCCCCeeEEEEEECCC-CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 79999999998753 345689644433221 24689999999999999999999999999875
No 17
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=6.8e-49 Score=416.90 Aligned_cols=326 Identities=20% Similarity=0.315 Sum_probs=243.0
Q ss_pred eEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCCCCcee
Q 008104 201 LYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDY 280 (577)
Q Consensus 201 ~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~~~~~ 280 (577)
.|+++|.||||+|++.|+|||||+++||+|. .|. ..++.|+|++|+| +... .|.|
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~~~----~~~~~f~~~~SsT----------~~~~----------~~~~ 57 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAA-PHP----FIHTYFHRELSST----------YRDL----------GKGV 57 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcC-CCc----cccccCCchhCcC----------cccC----------CceE
Confidence 6999999999999999999999999999987 662 3467899999985 2221 5889
Q ss_pred EEEeCCCCeEEEEEEEEEEEEeecCCCcc--ccceEEEEEEccCccccccCCccceEEecCCCCC--------CChHHHH
Q 008104 281 EIEYADHSSSMGVLARDELHLTIENGSLT--KPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV--------SLPSQLA 350 (577)
Q Consensus 281 ~i~YgdGs~~~G~~~~D~v~l~~~~g~~~--~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~--------S~~~qL~ 350 (577)
++.|++| .+.|.+++|+|+| |+.. ...+.|+++....+.+.. ...+|||||||++.+ +++++|+
T Consensus 58 ~i~Yg~G-s~~G~~~~D~v~i----g~~~~~~~~~~~~~~~~~~~~~~~-~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~ 131 (364)
T cd05473 58 TVPYTQG-SWEGELGTDLVSI----PKGPNVTFRANIAAITESENFFLN-GSNWEGILGLAYAELARPDSSVEPFFDSLV 131 (364)
T ss_pred EEEECcc-eEEEEEEEEEEEE----CCCCccceEEeeEEEeccccceec-ccccceeeeecccccccCCCCCCCHHHHHH
Confidence 9999999 7899999999999 4321 112335566554443321 236799999998754 4778999
Q ss_pred hcCCccceEEEEeec---------CCCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCccc
Q 008104 351 SQGIIKNVVGHCLTT---------NAGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARN 419 (577)
Q Consensus 351 ~~g~i~~~FSl~L~~---------~~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~ 419 (577)
+|+.++++||+||+. ....+|.|+||+ ..++.|++.|+|++.. .+|.|.+++|.|+++.+.++...
T Consensus 132 ~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~---~~~~v~l~~i~vg~~~~~~~~~~ 208 (364)
T cd05473 132 KQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREE---WYYEVIILKLEVGGQSLNLDCKE 208 (364)
T ss_pred hccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcc---eeEEEEEEEEEECCEeccccccc
Confidence 999887899998853 123479999994 5778899999999865 59999999999999988754322
Q ss_pred CCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCce
Q 008104 420 SQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQI 498 (577)
Q Consensus 420 ~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~ 498 (577)
.....+||||||+++++|+++|++|++++ ++.................|+.... .....+|+|+|+|+|.+..
T Consensus 209 ~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~------~~~~~~P~i~~~f~g~~~~ 282 (364)
T cd05473 209 YNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGT------TPWEIFPKISIYLRDENSS 282 (364)
T ss_pred ccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccC------chHhhCCcEEEEEccCCCC
Confidence 23357999999999999999999999999 6543111100000011124875321 1123589999999863222
Q ss_pred eeEEEEECCCccEEEeC---CCceEEEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecCCCCCCCC
Q 008104 499 VSTKFHISPEGYLVISK---KGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRF 569 (577)
Q Consensus 499 ~~~~~~l~p~~yl~~~~---~g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~C~~~~~~ 569 (577)
...++.|+|++|+.... .+..|+++.... ..+.||||+.|||++|+|||.+++|||||+++|.+....
T Consensus 283 ~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~---~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~~~~ 353 (364)
T cd05473 283 QSFRITILPQLYLRPVEDHGTQLDCYKFAISQ---STNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEHDGF 353 (364)
T ss_pred ceEEEEECHHHhhhhhccCCCcceeeEEeeec---CCCceEEeeeeEcceEEEEECCCCEEeeEecccccccCc
Confidence 23688999999998532 246897643322 235699999999999999999999999999999876553
No 18
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=9.6e-48 Score=406.64 Aligned_cols=330 Identities=23% Similarity=0.339 Sum_probs=252.0
Q ss_pred ecCCCce-EEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCC--------CCCCCCCCCc
Q 008104 208 VGNPPRP-YYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHK--------PGYCETCQQC 278 (577)
Q Consensus 208 IGTPpQ~-~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~--------~~~c~~~~~~ 278 (577)
+|||-.+ +.|+|||||+++||+|. +|. ++....++|.+..|........ ...|.. +.|
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~-~~~-----------sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~-~~C 68 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCD-AGH-----------SSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGN-NTC 68 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCC-CCC-----------cCCCCccCcCChhhccccccCCCccccCCCCCCCCC-CcC
Confidence 5788777 99999999999999987 531 1111248999999986543211 124533 358
Q ss_pred eeEEE-eCCCCeEEEEEEEEEEEEeecCCC----ccccceEEEEEEccCccccccCCccceEEecCCCCCCChHHHHhcC
Q 008104 279 DYEIE-YADHSSSMGVLARDELHLTIENGS----LTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQG 353 (577)
Q Consensus 279 ~~~i~-YgdGs~~~G~~~~D~v~l~~~~g~----~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~S~~~qL~~~g 353 (577)
.|... |++|+.+.|++++|+|+|+..+|+ .+++++.|||+........ ...+|||||||++.+|++.||..++
T Consensus 69 ~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~--~~~~dGIlGLg~~~lSl~sql~~~~ 146 (362)
T cd05489 69 TAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL--PPGAQGVAGLGRSPLSLPAQLASAF 146 (362)
T ss_pred eeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC--ccccccccccCCCccchHHHhhhhc
Confidence 88765 889999999999999999765544 3688999999987532211 2458999999999999999999877
Q ss_pred CccceEEEEeecCCCCCeeEEeCCCC--CC------CCCceEEeCccCC-CCcceEEEEeEEeeCCcceecCccc-----
Q 008104 354 IIKNVVGHCLTTNAGGGGYMFLGHDL--VP------SWGMAWVPMLDSP-FMELYHTEILKINYGSSPLNLGARN----- 419 (577)
Q Consensus 354 ~i~~~FSl~L~~~~~~~G~l~fGd~~--~~------~g~l~~~pl~~~~-~~~~w~V~l~~I~vgg~~l~i~~~~----- 419 (577)
.++++||+||.++...+|.|+||+.. .+ .+.++|+||+..+ ...+|.|+|++|+||++.+.+++..
T Consensus 147 ~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~ 226 (362)
T cd05489 147 GVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDR 226 (362)
T ss_pred CCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccc
Confidence 67899999999765668999999643 22 3789999998763 2369999999999999988765321
Q ss_pred CCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcc-cCc
Q 008104 420 SQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGS-KWQ 497 (577)
Q Consensus 420 ~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~g-g~~ 497 (577)
.+...+||||||++++||+++|++|.+++ +++........ .....+.|+..... ...+....+|.|+|+|+| |
T Consensus 227 ~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~-~~~~~~~C~~~~~~--~~~~~~~~~P~it~~f~g~g-- 301 (362)
T cd05489 227 LGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPA-AAVFPELCYPASAL--GNTRLGYAVPAIDLVLDGGG-- 301 (362)
T ss_pred cCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCC-CCCCcCccccCCCc--CCcccccccceEEEEEeCCC--
Confidence 23468999999999999999999999999 77653221111 11112569875321 111223468999999997 6
Q ss_pred eeeEEEEECCCccEEEeCCCceEEEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEec
Q 008104 498 IVSTKFHISPEGYLVISKKGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKS 561 (577)
Q Consensus 498 ~~~~~~~l~p~~yl~~~~~g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~ 561 (577)
++|.|+|++|+++..++.+|+++..... ..+..||||+.|||++|++||.+++|||||++
T Consensus 302 ---~~~~l~~~ny~~~~~~~~~Cl~f~~~~~-~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 302 ---VNWTIFGANSMVQVKGGVACLAFVDGGS-EPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred ---eEEEEcCCceEEEcCCCcEEEEEeeCCC-CCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 9999999999998777789999887542 12457999999999999999999999999975
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1.4e-47 Score=389.52 Aligned_cols=253 Identities=40% Similarity=0.749 Sum_probs=220.3
Q ss_pred eEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCCCCcee
Q 008104 201 LYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDY 280 (577)
Q Consensus 201 ~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~~~~~ 280 (577)
.|+++|+||||||++.|+|||||+++||+| |.|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-----------------------------------------------~~~ 33 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-----------------------------------------------CSY 33 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC-----------------------------------------------Cce
Confidence 499999999999999999999999999974 237
Q ss_pred EEEeCCCCeEEEEEEEEEEEEeecCCCc--cccceEEEEEEccCccccccCCccceEEecCCCCCCChHHHHhcCCccce
Q 008104 281 EIEYADHSSSMGVLARDELHLTIENGSL--TKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGIIKNV 358 (577)
Q Consensus 281 ~i~YgdGs~~~G~~~~D~v~l~~~~g~~--~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~S~~~qL~~~g~i~~~ 358 (577)
.+.|++|+.+.|.+++|+|+| ++. .++++.|||++.+++ +. ...++||||||+...|+++||..++ ++
T Consensus 34 ~~~Y~dg~~~~G~~~~D~v~~----g~~~~~~~~~~Fg~~~~~~~-~~--~~~~~GIlGLg~~~~s~~~ql~~~~---~~ 103 (265)
T cd05476 34 EYSYGDGSSTSGVLATETFTF----GDSSVSVPNVAFGCGTDNEG-GS--FGGADGILGLGRGPLSLVSQLGSTG---NK 103 (265)
T ss_pred EeEeCCCceeeeeEEEEEEEe----cCCCCccCCEEEEecccccC-Cc--cCCCCEEEECCCCcccHHHHhhccc---Ce
Confidence 889999989999999999999 676 789999999999876 32 4688999999999999999999887 89
Q ss_pred EEEEeecC--CCCCeeEEeCC--CCCCCCCceEEeCccCC-CCcceEEEEeEEeeCCcceecCcc-----cCCCccEEEe
Q 008104 359 VGHCLTTN--AGGGGYMFLGH--DLVPSWGMAWVPMLDSP-FMELYHTEILKINYGSSPLNLGAR-----NSQVGWALFD 428 (577)
Q Consensus 359 FSl~L~~~--~~~~G~l~fGd--~~~~~g~l~~~pl~~~~-~~~~w~V~l~~I~vgg~~l~i~~~-----~~~~~~aIiD 428 (577)
||+||.+. ...+|+|+||+ .. +.+++.|+|++..+ ...+|.|++++|+|+++.+.++.. ......+|||
T Consensus 104 Fs~~l~~~~~~~~~G~l~fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~D 182 (265)
T cd05476 104 FSYCLVPHDDTGGSSPLILGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIID 182 (265)
T ss_pred eEEEccCCCCCCCCCeEEECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEe
Confidence 99999975 46689999995 34 78999999998752 126999999999999998764321 2345789999
Q ss_pred cccccccccHHHHHHHHHHHHhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCceeeEEEEECCC
Q 008104 429 TGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPE 508 (577)
Q Consensus 429 SGTt~i~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~~l~p~ 508 (577)
|||++++||+++| |.|+|+|+++ +.|.++++
T Consensus 183 TGTs~~~lp~~~~--------------------------------------------P~i~~~f~~~-----~~~~i~~~ 213 (265)
T cd05476 183 SGTTLTYLPDPAY--------------------------------------------PDLTLHFDGG-----ADLELPPE 213 (265)
T ss_pred CCCcceEcCcccc--------------------------------------------CCEEEEECCC-----CEEEeCcc
Confidence 9999999998887 3689999965 89999999
Q ss_pred ccEEEeCCCceEEEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecCC
Q 008104 509 GYLVISKKGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSHC 563 (577)
Q Consensus 509 ~yl~~~~~g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~C 563 (577)
+|+++...+.+|++++... ..+.||||++|||++|++||.+++|||||+++|
T Consensus 214 ~y~~~~~~~~~C~~~~~~~---~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 214 NYFVDVGEGVVCLAILSSS---SGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred cEEEECCCCCEEEEEecCC---CCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 9999766778999988753 357899999999999999999999999999999
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=3.3e-47 Score=389.37 Aligned_cols=266 Identities=22% Similarity=0.365 Sum_probs=219.9
Q ss_pred EEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCCCCceeE
Q 008104 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDYE 281 (577)
Q Consensus 202 Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~~~~~~ 281 (577)
|+++|+||||||++.|+|||||+++||+|. .|..|.+..+..|++++|+|..+ ...|.|.
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~c~~~~~~~~~~y~~~~Sst~~~-------------------~~~~~~~ 60 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSS-ETPAAQQGGHKLYDPSKSSTAKL-------------------LPGATWS 60 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeC-CCCchhhccCCcCCCccCcccee-------------------cCCcEEE
Confidence 899999999999999999999999999999 99999988889999999985111 1247899
Q ss_pred EEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCC---------CChHHHHhc
Q 008104 282 IEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV---------SLPSQLASQ 352 (577)
Q Consensus 282 i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~---------S~~~qL~~~ 352 (577)
+.|++|+.+.|.+++|+|+| |+.+++++.||+++...+.+.. ...++||||||++.. +++++|.++
T Consensus 61 i~Y~~G~~~~G~~~~D~v~i----g~~~~~~~~fg~~~~~~~~~~~-~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~ 135 (278)
T cd06097 61 ISYGDGSSASGIVYTDTVSI----GGVEVPNQAIELATAVSASFFS-DTASDGLLGLAFSSINTVQPPKQKTFFENALSS 135 (278)
T ss_pred EEeCCCCeEEEEEEEEEEEE----CCEEECCeEEEEEeecCccccc-cccccceeeeccccccccccCCCCCHHHHHHHh
Confidence 99999977999999999999 8888999999999987654332 467999999999654 467889888
Q ss_pred CCccceEEEEeecCCCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCcccCCCccEEEecc
Q 008104 353 GIIKNVVGHCLTTNAGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTG 430 (577)
Q Consensus 353 g~i~~~FSl~L~~~~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~~~~~~aIiDSG 430 (577)
+. +++||+||.+ ..+|+|+||+ ..++.|+++|+|+.... .+|.|++++|.|+++.... .....+|||||
T Consensus 136 ~~-~~~Fs~~l~~--~~~G~l~fGg~D~~~~~g~l~~~pi~~~~--~~w~v~l~~i~v~~~~~~~----~~~~~~iiDSG 206 (278)
T cd06097 136 LD-APLFTADLRK--AAPGFYTFGYIDESKYKGEISWTPVDNSS--GFWQFTSTSYTVGGDAPWS----RSGFSAIADTG 206 (278)
T ss_pred cc-CceEEEEecC--CCCcEEEEeccChHHcCCceEEEEccCCC--cEEEEEEeeEEECCcceee----cCCceEEeecC
Confidence 65 8999999985 5689999995 56789999999998743 6999999999999984432 34578999999
Q ss_pred cccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCceeeEEEEECCCc
Q 008104 431 SSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEG 509 (577)
Q Consensus 431 Tt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~~l~p~~ 509 (577)
|+++++|++++++|.+++ ..... .....+.++ |... +|+|+|+|
T Consensus 207 Ts~~~lP~~~~~~l~~~l~g~~~~----~~~~~~~~~-C~~~-------------~P~i~f~~----------------- 251 (278)
T cd06097 207 TTLILLPDAIVEAYYSQVPGAYYD----SEYGGWVFP-CDTT-------------LPDLSFAV----------------- 251 (278)
T ss_pred CchhcCCHHHHHHHHHhCcCCccc----CCCCEEEEE-CCCC-------------CCCEEEEE-----------------
Confidence 999999999999999988 33210 011112234 6431 57888877
Q ss_pred cEEEeCCCceEEEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEe
Q 008104 510 YLVISKKGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAK 560 (577)
Q Consensus 510 yl~~~~~g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~ 560 (577)
.||||++|||++|+|||++++|||||+
T Consensus 252 ------------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ------------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ------------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 599999999999999999999999995
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2.1e-46 Score=388.82 Aligned_cols=302 Identities=30% Similarity=0.539 Sum_probs=246.9
Q ss_pred eEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCC-CCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCCCCce
Q 008104 201 LYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSC-AKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCD 279 (577)
Q Consensus 201 ~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C-~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~~~~ 279 (577)
+|+++|.||||+|++.|++||||+++||++. .|..| .|..+..|++++|++ +... .+.
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~-~c~~~~~~~~~~~y~~~~S~t----------~~~~----------~~~ 59 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSS-NCNSCSSCASSGFYNPSKSST----------FSNQ----------GKP 59 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBT-TECSHTHHCTSC-BBGGGSTT----------EEEE----------EEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeecee-ccccccccccccccccccccc----------cccc----------eee
Confidence 5999999999999999999999999999988 89887 667888999998874 2111 467
Q ss_pred eEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCC-------CCCChHHHHhc
Q 008104 280 YEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRA-------KVSLPSQLASQ 352 (577)
Q Consensus 280 ~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~-------~~S~~~qL~~~ 352 (577)
+.+.|++|+ ++|.+++|+|.| |++.+.++.||++....+.... ...++||||||+. ..+++++|+++
T Consensus 60 ~~~~y~~g~-~~G~~~~D~v~i----g~~~~~~~~f~~~~~~~~~~~~-~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~ 133 (317)
T PF00026_consen 60 FSISYGDGS-VSGNLVSDTVSI----GGLTIPNQTFGLADSYSGDPFS-PIPFDGILGLGFPSLSSSSTYPTFLDQLVQQ 133 (317)
T ss_dssp EEEEETTEE-EEEEEEEEEEEE----TTEEEEEEEEEEEEEEESHHHH-HSSSSEEEE-SSGGGSGGGTS-SHHHHHHHT
T ss_pred eeeeccCcc-cccccccceEee----eeccccccceeccccccccccc-cccccccccccCCcccccccCCcceecchhh
Confidence 999999995 999999999999 8999999999999996544322 4688999999974 35789999999
Q ss_pred CCc-cceEEEEeecCCCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCcccCCCccEEEec
Q 008104 353 GII-KNVVGHCLTTNAGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDT 429 (577)
Q Consensus 353 g~i-~~~FSl~L~~~~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~~~~~~aIiDS 429 (577)
|.| +++||+||.+.....|.|+||+ ..++.++++|+|+... .+|.+.+++|.+++..... .....++|||
T Consensus 134 g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~---~~w~v~~~~i~i~~~~~~~----~~~~~~~~Dt 206 (317)
T PF00026_consen 134 GLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSS---GYWSVPLDSISIGGESVFS----SSGQQAILDT 206 (317)
T ss_dssp TSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSST---TTTEEEEEEEEETTEEEEE----EEEEEEEEET
T ss_pred ccccccccceeeeecccccchheeeccccccccCceeccCcccc---ccccccccccccccccccc----ccceeeeccc
Confidence 999 9999999998666789999995 5778899999999944 6999999999999983222 2346799999
Q ss_pred ccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCceeeEEEEECCC
Q 008104 430 GSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPE 508 (577)
Q Consensus 430 GTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~~l~p~ 508 (577)
||+++++|.+++++|++++ ..... . .+.++ |... ..+|.|+|+|++ .++.|+|+
T Consensus 207 gt~~i~lp~~~~~~i~~~l~~~~~~-~------~~~~~-c~~~-----------~~~p~l~f~~~~------~~~~i~~~ 261 (317)
T PF00026_consen 207 GTSYIYLPRSIFDAIIKALGGSYSD-G------VYSVP-CNST-----------DSLPDLTFTFGG------VTFTIPPS 261 (317)
T ss_dssp TBSSEEEEHHHHHHHHHHHTTEEEC-S------EEEEE-TTGG-----------GGSEEEEEEETT------EEEEEEHH
T ss_pred ccccccccchhhHHHHhhhcccccc-e------eEEEe-cccc-----------cccceEEEeeCC------EEEEecch
Confidence 9999999999999999999 55442 1 11223 6443 247999999997 89999999
Q ss_pred ccEEEeCCC--ceEEEEEcCCC-CCCCCceEeChhhhccEEEEEECCCCEEEEEec
Q 008104 509 GYLVISKKG--NICLGILDGSE-VHNGSTIILGDISLRGQLVVYDNVNKRIGWAKS 561 (577)
Q Consensus 509 ~yl~~~~~g--~~Cl~i~~~~~-~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~ 561 (577)
+|++..... ..|+..+...+ ......+|||.+|||++|+|||.+++|||||++
T Consensus 262 ~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 262 DYIFKIEDGNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp HHEEEESSTTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred HhcccccccccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 999986443 38955444311 134678999999999999999999999999986
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.8e-45 Score=379.07 Aligned_cols=271 Identities=27% Similarity=0.391 Sum_probs=227.9
Q ss_pred eEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCCCCcee
Q 008104 201 LYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDY 280 (577)
Q Consensus 201 ~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~~~~~ 280 (577)
.|+++|.||||+|++.|+|||||+++||+ .|
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-------------------------------------------------~~ 32 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-------------------------------------------------DF 32 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-------------------------------------------------ee
Confidence 79999999999999999999999999997 17
Q ss_pred EEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCC-----------CChHHH
Q 008104 281 EIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV-----------SLPSQL 349 (577)
Q Consensus 281 ~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~-----------S~~~qL 349 (577)
++.|++|+.+.|.+++|+|+| |+..++++.|||++.. ...+||||||+... +|+++|
T Consensus 33 ~~~Y~~g~~~~G~~~~D~v~~----g~~~~~~~~fg~~~~~--------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L 100 (295)
T cd05474 33 SISYGDGTSASGTWGTDTVSI----GGATVKNLQFAVANST--------SSDVGVLGIGLPGNEATYGTGYTYPNFPIAL 100 (295)
T ss_pred EEEeccCCcEEEEEEEEEEEE----CCeEecceEEEEEecC--------CCCcceeeECCCCCcccccCCCcCCCHHHHH
Confidence 889999889999999999999 7788899999999884 35799999999775 689999
Q ss_pred HhcCCc-cceEEEEeecCCCCCeeEEeCC--CCCCCCCceEEeCccCCC---CcceEEEEeEEeeCCcceecCcccCCCc
Q 008104 350 ASQGII-KNVVGHCLTTNAGGGGYMFLGH--DLVPSWGMAWVPMLDSPF---MELYHTEILKINYGSSPLNLGARNSQVG 423 (577)
Q Consensus 350 ~~~g~i-~~~FSl~L~~~~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~---~~~w~V~l~~I~vgg~~l~i~~~~~~~~ 423 (577)
.++|.| +++||+||.+....+|.|+||+ ..++.++++|+|+..... ..+|.|.+++|.++++.+..+. .....
T Consensus 101 ~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~-~~~~~ 179 (295)
T cd05474 101 KKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTL-LSKNL 179 (295)
T ss_pred HHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccc-cCCCc
Confidence 999999 8999999997656789999994 567889999999987642 2689999999999998865321 23457
Q ss_pred cEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCceeeEE
Q 008104 424 WALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTK 502 (577)
Q Consensus 424 ~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~ 502 (577)
.+||||||++++||.+++++|++++ +.+... ...+.. .|+... . |.|+|+|+| ++
T Consensus 180 ~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~-----~~~~~~-~C~~~~-----------~-p~i~f~f~g------~~ 235 (295)
T cd05474 180 PALLDSGTTLTYLPSDIVDAIAKQLGATYDSD-----EGLYVV-DCDAKD-----------D-GSLTFNFGG------AT 235 (295)
T ss_pred cEEECCCCccEeCCHHHHHHHHHHhCCEEcCC-----CcEEEE-eCCCCC-----------C-CEEEEEECC------eE
Confidence 8999999999999999999999999 655421 112223 376532 2 899999987 89
Q ss_pred EEECCCccEEEeC----CCceE-EEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEec
Q 008104 503 FHISPEGYLVISK----KGNIC-LGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKS 561 (577)
Q Consensus 503 ~~l~p~~yl~~~~----~g~~C-l~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~ 561 (577)
+.|++++|+++.. .+.+| +++.... .+.||||++|||++|++||.+++|||||++
T Consensus 236 ~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~----~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 236 ISVPLSDLVLPASTDDGGDGACYLGIQPST----SDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EEEEHHHhEeccccCCCCCCCeEEEEEeCC----CCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 9999999998753 36788 5666543 268999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=7.3e-43 Score=355.98 Aligned_cols=269 Identities=31% Similarity=0.539 Sum_probs=221.7
Q ss_pred EEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCc--CCCCCCccccCCCcchhhhhcCCCCCCCCCCCCce
Q 008104 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPL--YKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCD 279 (577)
Q Consensus 202 Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~--ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~~~~ 279 (577)
|+++|.||||+|++.|+|||||+++||+|. .|..|.+..... |++..|++ . ....|.
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~-~c~~~~~~~~~~~~~~~~~s~~----------~----------~~~~~~ 59 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSS-NCTSCSCQKHPRFKYDSSKSST----------Y----------KDTGCT 59 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecC-CCCccccccCCCCccCccCCce----------e----------ecCCCE
Confidence 789999999999999999999999999999 999887766555 56655542 1 123689
Q ss_pred eEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCC------CCChHHHHhcC
Q 008104 280 YEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAK------VSLPSQLASQG 353 (577)
Q Consensus 280 ~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~------~S~~~qL~~~g 353 (577)
|++.|++| .+.|.+++|+|+| ++..++++.|||++...+.+. ...++||||||+.. .+++++|.+++
T Consensus 60 ~~~~Y~~g-~~~g~~~~D~v~~----~~~~~~~~~fg~~~~~~~~~~--~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~ 132 (283)
T cd05471 60 FSITYGDG-SVTGGLGTDTVTI----GGLTIPNQTFGCATSESGDFS--SSGFDGILGLGFPSLSVDGVPSFFDQLKSQG 132 (283)
T ss_pred EEEEECCC-eEEEEEEEeEEEE----CCEEEeceEEEEEeccCCccc--ccccceEeecCCcccccccCCCHHHHHHHCC
Confidence 99999998 8999999999999 777799999999999875332 46899999999987 78999999999
Q ss_pred Cc-cceEEEEeecC--CCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCcccCCCccEEEe
Q 008104 354 II-KNVVGHCLTTN--AGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFD 428 (577)
Q Consensus 354 ~i-~~~FSl~L~~~--~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~~~~~~aIiD 428 (577)
.| +++||+||.+. ....|.|+||+ ..++.+++.|+|++.. ...+|.|.+++|.|++.... .......++||
T Consensus 133 ~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~-~~~~~~v~l~~i~v~~~~~~---~~~~~~~~iiD 208 (283)
T cd05471 133 LISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSN-GPGYWQVPLDGISVGGKSVI---SSSGGGGAIVD 208 (283)
T ss_pred CCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCC-CCCEEEEEeCeEEECCceee---ecCCCcEEEEe
Confidence 99 99999999975 36799999995 4557899999999985 12699999999999997411 12456899999
Q ss_pred cccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCceeeEEEEECC
Q 008104 429 TGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISP 507 (577)
Q Consensus 429 SGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~~l~p 507 (577)
|||++++||++++++|++++ +.... ........ |.. ...+|.|+|+|
T Consensus 209 sGt~~~~lp~~~~~~l~~~~~~~~~~-----~~~~~~~~-~~~-----------~~~~p~i~f~f--------------- 256 (283)
T cd05471 209 SGTSLIYLPSSVYDAILKALGAAVSS-----SDGGYGVD-CSP-----------CDTLPDITFTF--------------- 256 (283)
T ss_pred cCCCCEeCCHHHHHHHHHHhCCcccc-----cCCcEEEe-Ccc-----------cCcCCCEEEEE---------------
Confidence 99999999999999999999 65542 00000111 222 23578999988
Q ss_pred CccEEEeCCCceEEEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEe
Q 008104 508 EGYLVISKKGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAK 560 (577)
Q Consensus 508 ~~yl~~~~~g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~ 560 (577)
.+|||++|||++|++||.+++|||||+
T Consensus 257 --------------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 --------------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred --------------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 589999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.95 E-value=1e-26 Score=219.54 Aligned_cols=159 Identities=40% Similarity=0.775 Sum_probs=128.0
Q ss_pred EEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCcc---ccCCCcchhhhhcCCCCCCCCCCCCc
Q 008104 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNI---LPYKDSLCMEIQRNHKPGYCETCQQC 278 (577)
Q Consensus 202 Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sst---v~c~~~~c~~~~~~~~~~~c~~~~~~ 278 (577)
|+++|.||||+|++.|+|||||+++|++| ..+.|+|.+|+| ++|.++.|...... ....|..++.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~-~~~~~~~~~~C 69 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSF-CPCCCCSNNSC 69 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSS-BTCCTCESSEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccc-cccCCCCcCcc
Confidence 89999999999999999999999999986 357899999976 99999999976542 11334445789
Q ss_pred eeEEEeCCCCeEEEEEEEEEEEEeecCC-CccccceEEEEEEccCccccccCCccceEEecCCCCCCChHHHHhcCCccc
Q 008104 279 DYEIEYADHSSSMGVLARDELHLTIENG-SLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGIIKN 357 (577)
Q Consensus 279 ~~~i~YgdGs~~~G~~~~D~v~l~~~~g-~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~S~~~qL~~~g~i~~ 357 (577)
.|.+.|++|+.+.|.+++|+|++...++ ...+.++.|||+....+.+ ...+||||||+..+||+.||.++ ..+
T Consensus 70 ~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~----~~~~GilGLg~~~~Sl~sQl~~~--~~~ 143 (164)
T PF14543_consen 70 PYSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF----YGADGILGLGRGPLSLPSQLASS--SGN 143 (164)
T ss_dssp EEEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS----TTEEEEEE-SSSTTSHHHHHHHH----S
T ss_pred cceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC----cCCCcccccCCCcccHHHHHHHh--cCC
Confidence 9999999999999999999999976543 2567899999999988654 47999999999999999999998 788
Q ss_pred eEEEEeec-CCCCCeeEEeCC
Q 008104 358 VVGHCLTT-NAGGGGYMFLGH 377 (577)
Q Consensus 358 ~FSl~L~~-~~~~~G~l~fGd 377 (577)
.||+||.+ +....|.|+||+
T Consensus 144 ~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 144 KFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp EEEEEB-S-SSSSEEEEEECS
T ss_pred eEEEECCCCCCCCCEEEEeCc
Confidence 99999998 668899999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.90 E-value=5.7e-23 Score=193.43 Aligned_cols=155 Identities=24% Similarity=0.455 Sum_probs=118.4
Q ss_pred ceEEEEeEEeeCCcceecCcccC----CCccEEEecccccccccHHHHHHHHHHH-HhhcCCCcee-cCCCCCCcccccc
Q 008104 398 LYHTEILKINYGSSPLNLGARNS----QVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVL-DASDPTLPVCWRA 471 (577)
Q Consensus 398 ~w~V~l~~I~vgg~~l~i~~~~~----~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~-~~~~~~~~~C~~~ 471 (577)
+|.|+|.+|+||++++.++.... ....+||||||++++||+++|+++++++ +++....+.+ ......++.||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 58899999999999999887643 5689999999999999999999999999 7776433222 3455677789987
Q ss_pred CCCccccccccccceeEEEEEcccCceeeEEEEECCCccEEEeCCCceEEEEEcCCCCCCCCceEeChhhhccEEEEEEC
Q 008104 472 KFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDN 551 (577)
Q Consensus 472 ~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~~l~p~~yl~~~~~g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~ 551 (577)
.... .+.....+|+|+|+|.+| +.++|++++|++...++.+|+++.... ....+..|||..+|++++++||+
T Consensus 81 ~~~~--~~~~~~~~P~i~l~F~~g-----a~l~l~~~~y~~~~~~~~~Cla~~~~~-~~~~~~~viG~~~~~~~~v~fDl 152 (161)
T PF14541_consen 81 SSFG--VNRDWAKFPTITLHFEGG-----ADLTLPPENYFVQVSPGVFCLAFVPSD-ADDDGVSVIGNFQQQNYHVVFDL 152 (161)
T ss_dssp GCS---EETTEESS--EEEEETTS-----EEEEE-HHHHEEEECTTEEEESEEEET-STTSSSEEE-HHHCCTEEEEEET
T ss_pred cccc--cccccccCCeEEEEEeCC-----cceeeeccceeeeccCCCEEEEEEccC-CCCCCcEEECHHHhcCcEEEEEC
Confidence 6411 234567799999999987 999999999999988889999999981 22467899999999999999999
Q ss_pred CCCEEEEEe
Q 008104 552 VNKRIGWAK 560 (577)
Q Consensus 552 ~~~rIGfA~ 560 (577)
+++||||++
T Consensus 153 ~~~~igF~~ 161 (161)
T PF14541_consen 153 ENGRIGFAP 161 (161)
T ss_dssp TTTEEEEEE
T ss_pred CCCEEEEeC
Confidence 999999986
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.86 E-value=1.9e-21 Score=170.63 Aligned_cols=108 Identities=31% Similarity=0.565 Sum_probs=92.7
Q ss_pred EEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcC-CCCCCccccCCCcchhhhhcCCCCCCCCCCCCceeEE
Q 008104 204 TYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLY-KPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDYEI 282 (577)
Q Consensus 204 ~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~y-dps~Sstv~c~~~~c~~~~~~~~~~~c~~~~~~~~~i 282 (577)
++|.||||||++.|+|||||+++||+|. .|..|.+..+..| +++.|++ +.. ..|.|.+
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~-~c~~~~~~~~~~~~~~~~sst----------~~~----------~~~~~~~ 59 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSV-DCQSLAIYSHSSYDDPSASST----------YSD----------NGCTFSI 59 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCC-CCCCcccccccccCCcCCCCC----------CCC----------CCcEEEE
Confidence 4799999999999999999999999998 8998887777777 9988873 221 2689999
Q ss_pred EeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEec
Q 008104 283 EYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGL 338 (577)
Q Consensus 283 ~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGL 338 (577)
.|++| .+.|.++.|+|+| |+..++++.|||++...+.+.. ....+|||||
T Consensus 60 ~Y~~g-~~~g~~~~D~v~i----g~~~~~~~~fg~~~~~~~~~~~-~~~~~GilGL 109 (109)
T cd05470 60 TYGTG-SLSGGLSTDTVSI----GDIEVVGQAFGCATDEPGATFL-PALFDGILGL 109 (109)
T ss_pred EeCCC-eEEEEEEEEEEEE----CCEEECCEEEEEEEecCCcccc-ccccccccCC
Confidence 99999 6889999999999 7888999999999998776432 4578999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.95 E-value=3.2e-05 Score=65.32 Aligned_cols=93 Identities=18% Similarity=0.196 Sum_probs=67.3
Q ss_pred eEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCCCCcee
Q 008104 201 LYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDY 280 (577)
Q Consensus 201 ~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~~~~~ 280 (577)
.|++++.|| .+++.++||||++.+|+... ....+.. .+ ......
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~-~~~~l~~----~~-----------------------------~~~~~~ 45 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEE-LAERLGL----PL-----------------------------TLGGKV 45 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHH-HHHHcCC----Cc-----------------------------cCCCcE
Confidence 689999999 69999999999999999764 1111110 00 012346
Q ss_pred EEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCC
Q 008104 281 EIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSR 340 (577)
Q Consensus 281 ~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~ 340 (577)
.+..++|.........+.+++ |+....++.+........ ..+||||+.+
T Consensus 46 ~~~~~~G~~~~~~~~~~~i~i----g~~~~~~~~~~v~d~~~~-------~~~gIlG~d~ 94 (96)
T cd05483 46 TVQTANGRVRAARVRLDSLQI----GGITLRNVPAVVLPGDAL-------GVDGLLGMDF 94 (96)
T ss_pred EEEecCCCccceEEEcceEEE----CCcEEeccEEEEeCCccc-------CCceEeChHH
Confidence 677788866777777899999 888888888887765421 5899999853
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.47 E-value=0.032 Score=49.90 Aligned_cols=95 Identities=16% Similarity=0.164 Sum_probs=63.0
Q ss_pred CCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCCCC
Q 008104 198 PDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQ 277 (577)
Q Consensus 198 ~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~~ 277 (577)
.+|.|++++.|. .+++.++||||++.+-+... --... ..++.. ..
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~-~A~~L------gl~~~~--------------------------~~ 52 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEE-DAQRL------GLDLNR--------------------------LG 52 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHH-HHHHc------CCCccc--------------------------CC
Confidence 478999999997 57999999999999988653 00000 001100 01
Q ss_pred ceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecC
Q 008104 278 CDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLS 339 (577)
Q Consensus 278 ~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg 339 (577)
....+.-+.|......+.-|.+.+ |+....++.+.++... ...+|+||+.
T Consensus 53 ~~~~~~ta~G~~~~~~~~l~~l~i----G~~~~~nv~~~v~~~~--------~~~~~LLGm~ 102 (121)
T TIGR02281 53 YTVTVSTANGQIKAARVTLDRVAI----GGIVVNDVDAMVAEGG--------ALSESLLGMS 102 (121)
T ss_pred ceEEEEeCCCcEEEEEEEeCEEEE----CCEEEeCcEEEEeCCC--------cCCceEcCHH
Confidence 234445556744445557899999 8999999998776432 1247999985
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.17 E-value=0.29 Score=40.26 Aligned_cols=88 Identities=25% Similarity=0.269 Sum_probs=54.4
Q ss_pred EEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCCCCceeEEEe
Q 008104 205 YMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDYEIEY 284 (577)
Q Consensus 205 ~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~~~~~~i~Y 284 (577)
++.|+ .+++.+++|||++.+.+... -+.... ..+.. ......+.-
T Consensus 2 ~v~vn--g~~~~~liDTGa~~~~i~~~-~~~~l~------~~~~~--------------------------~~~~~~~~~ 46 (90)
T PF13650_consen 2 PVKVN--GKPVRFLIDTGASISVISRS-LAKKLG------LKPRP--------------------------KSVPISVSG 46 (90)
T ss_pred EEEEC--CEEEEEEEcCCCCcEEECHH-HHHHcC------CCCcC--------------------------CceeEEEEe
Confidence 56666 48999999999998888643 111110 00000 011244444
Q ss_pred CCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecC
Q 008104 285 ADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLS 339 (577)
Q Consensus 285 gdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg 339 (577)
.+|........-+.+++ |+....++.|-+... ....+||||+-
T Consensus 47 ~~g~~~~~~~~~~~i~i----g~~~~~~~~~~v~~~--------~~~~~~iLG~d 89 (90)
T PF13650_consen 47 AGGSVTVYRGRVDSITI----GGITLKNVPFLVVDL--------GDPIDGILGMD 89 (90)
T ss_pred CCCCEEEEEEEEEEEEE----CCEEEEeEEEEEECC--------CCCCEEEeCCc
Confidence 55644555566778999 788777887766651 35679999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=92.37 E-value=1.1 Score=39.97 Aligned_cols=90 Identities=16% Similarity=0.242 Sum_probs=56.1
Q ss_pred ceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCCCCce
Q 008104 200 GLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCD 279 (577)
Q Consensus 200 ~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~~~~ 279 (577)
..+++++.|+ ++++.++||||++.+++... -+..+..... ....
T Consensus 15 ~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~-~a~~lgl~~~---------------------------------~~~~ 58 (124)
T cd05479 15 PMLYINVEIN--GVPVKAFVDSGAQMTIMSKA-CAEKCGLMRL---------------------------------IDKR 58 (124)
T ss_pred eEEEEEEEEC--CEEEEEEEeCCCceEEeCHH-HHHHcCCccc---------------------------------cCcc
Confidence 3789999998 58899999999999999654 2222211100 0111
Q ss_pred eEE-EeC-CCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecC
Q 008104 280 YEI-EYA-DHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLS 339 (577)
Q Consensus 280 ~~i-~Yg-dGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg 339 (577)
+.. ..+ ++....|....+.+.+ ++...+ ..|.+... ...|+|||+-
T Consensus 59 ~~~~~~g~g~~~~~g~~~~~~l~i----~~~~~~-~~~~Vl~~---------~~~d~ILG~d 106 (124)
T cd05479 59 FQGIAKGVGTQKILGRIHLAQVKI----GNLFLP-CSFTVLED---------DDVDFLIGLD 106 (124)
T ss_pred eEEEEecCCCcEEEeEEEEEEEEE----CCEEee-eEEEEECC---------CCcCEEecHH
Confidence 222 233 2235667777788999 676543 56655422 3679999984
No 31
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=91.38 E-value=2.2 Score=44.99 Aligned_cols=53 Identities=17% Similarity=0.304 Sum_probs=32.2
Q ss_pred EeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEc-------------cCccccccCCccceEEecCC
Q 008104 283 EYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYD-------------QQGLLLNTLVKTDGILGLSR 340 (577)
Q Consensus 283 ~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~-------------~~g~~~~~~~~~dGIlGLg~ 340 (577)
.|++| ..-|.+.+-+|+| |+-...++.+-+..+ -...-......+.||||+|.
T Consensus 83 ~F~sg-ytWGsVr~AdV~i----gge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~ 148 (370)
T PF11925_consen 83 QFASG-YTWGSVRTADVTI----GGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGP 148 (370)
T ss_pred hccCc-ccccceEEEEEEE----cCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecC
Confidence 47777 7889999999999 444333333333322 11011112567899999997
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=87.53 E-value=3 Score=37.21 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=22.7
Q ss_pred CceEeChhhhccEEEEEECCCCEEEE
Q 008104 533 STIILGDISLRGQLVVYDNVNKRIGW 558 (577)
Q Consensus 533 ~~~ILG~~FLr~~yvVFD~~~~rIGf 558 (577)
-..|||..||+.+-.+.|..+++|-+
T Consensus 99 ~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 99 VDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred cCEEecHHHHHhCCeEEECCCCEEEC
Confidence 34699999999999999999998853
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=87.51 E-value=0.61 Score=39.10 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=24.6
Q ss_pred EEEEEEecCCCceEEEEEECCCCceeEecC
Q 008104 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCD 231 (577)
Q Consensus 202 Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~ 231 (577)
|++++.|+ .+++.+++||||+.+++.-+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHH
Confidence 57889998 58999999999999999754
No 34
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=81.66 E-value=10 Score=31.38 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=17.9
Q ss_pred CceEEEEEECCCCceeEecC
Q 008104 212 PRPYYLDMDTGSDLTWIQCD 231 (577)
Q Consensus 212 pQ~~~v~vDTGSs~tWV~~~ 231 (577)
++++.+++|||++.+-+...
T Consensus 7 G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 7 GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred CEEEEEEEECCCCeEEECHH
Confidence 58999999999999999755
No 35
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=81.46 E-value=2.5 Score=33.93 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=28.2
Q ss_pred CCceEEEEEEecCCCceEEEEEECCCCceeEecC
Q 008104 198 PDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCD 231 (577)
Q Consensus 198 ~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~ 231 (577)
..+.+++++.||. +.+.+++|||++...|..+
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~~ 36 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISES 36 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCHH
Confidence 3578999999995 9999999999999999765
No 36
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=77.72 E-value=5.3 Score=36.36 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=25.4
Q ss_pred ceEeChhhhccEEEEEECCCCEEEEEec
Q 008104 534 TIILGDISLRGQLVVYDNVNKRIGWAKS 561 (577)
Q Consensus 534 ~~ILG~~FLr~~yvVFD~~~~rIGfA~~ 561 (577)
..|||..+|+.+..+-|..+++|-|...
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 4799999999999999999999999753
No 37
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=72.55 E-value=20 Score=34.87 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=63.7
Q ss_pred CCceEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhh
Q 008104 185 DSSSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQ 264 (577)
Q Consensus 185 ~~~~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~ 264 (577)
.+..++.|... .+|-|.++..|- +|++..++|||-+..-+... . ...-.||.++.
T Consensus 91 ~g~~~v~Lak~--~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~-d------A~RlGid~~~l-------------- 145 (215)
T COG3577 91 DGYQEVSLAKS--RDGHFEANGRVN--GKKVDFLVDTGATSVALNEE-D------ARRLGIDLNSL-------------- 145 (215)
T ss_pred CCceEEEEEec--CCCcEEEEEEEC--CEEEEEEEecCcceeecCHH-H------HHHhCCCcccc--------------
Confidence 34456666543 478999999995 79999999999999988654 1 11223443322
Q ss_pred cCCCCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEE
Q 008104 265 RNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCA 318 (577)
Q Consensus 265 ~~~~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a 318 (577)
..++.+.-++|..-.-.+--|.|.| |+....++.=-++
T Consensus 146 ------------~y~~~v~TANG~~~AA~V~Ld~v~I----G~I~~~nV~A~V~ 183 (215)
T COG3577 146 ------------DYTITVSTANGRARAAPVTLDRVQI----GGIRVKNVDAMVA 183 (215)
T ss_pred ------------CCceEEEccCCccccceEEeeeEEE----ccEEEcCchhhee
Confidence 2456777788855566778999999 7887776654333
No 38
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=70.20 E-value=6.3 Score=33.27 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=21.9
Q ss_pred EEEEEecCCCceEEEEEECCCCceeEecC
Q 008104 203 FTYMIVGNPPRPYYLDMDTGSDLTWIQCD 231 (577)
Q Consensus 203 ~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~ 231 (577)
+.+|.|. .+++.+++||||+.+-|+..
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccc
Confidence 4566666 47999999999999999765
No 39
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=66.99 E-value=9.8 Score=33.87 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=26.0
Q ss_pred cceEEEEeEEeeCCcceecCcccCCCccEEEecccccccccHHHHHHH
Q 008104 397 ELYHTEILKINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSEL 444 (577)
Q Consensus 397 ~~w~V~l~~I~vgg~~l~i~~~~~~~~~aIiDSGTt~i~lP~~~~~~l 444 (577)
++|.++ +.|||++ ..++||||.+.+.++.++.+.+
T Consensus 10 g~~~v~---~~InG~~----------~~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 10 GHFYAT---GRVNGRN----------VRFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CeEEEE---EEECCEE----------EEEEEECCCCcEEcCHHHHHHc
Confidence 455444 4577763 4699999999999998877664
No 40
>PF13650 Asp_protease_2: Aspartyl protease
Probab=66.17 E-value=6.5 Score=32.03 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=18.9
Q ss_pred ccEEEecccccccccHHHHHHH
Q 008104 423 GWALFDTGSSYTYFTKQAYSEL 444 (577)
Q Consensus 423 ~~aIiDSGTt~i~lP~~~~~~l 444 (577)
..++||||++.+.+.++.++++
T Consensus 10 ~~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 10 VRFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEEEcCCCCcEEECHHHHHHc
Confidence 4699999999999998887665
No 41
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=66.00 E-value=28 Score=30.24 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=20.6
Q ss_pred CceEeChhhhccEEEEEECCCCEE
Q 008104 533 STIILGDISLRGQLVVYDNVNKRI 556 (577)
Q Consensus 533 ~~~ILG~~FLr~~yvVFD~~~~rI 556 (577)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 357999999999999999987753
No 42
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=55.62 E-value=16 Score=29.18 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=23.5
Q ss_pred EeeCCcceecCcccCCCccEEEecccccccccHHHHHHH
Q 008104 406 INYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSEL 444 (577)
Q Consensus 406 I~vgg~~l~i~~~~~~~~~aIiDSGTt~i~lP~~~~~~l 444 (577)
+.|+|..+ .+++|||.+..+++.+.++.+
T Consensus 13 ~~I~g~~~----------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV----------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE----------EEEEeCCCcceecCHHHHHHh
Confidence 56776543 599999999999998888776
No 43
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=55.55 E-value=14 Score=30.78 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=24.4
Q ss_pred EEeeCCcceecCcccCCCccEEEecccccccccHHHHHHH
Q 008104 405 KINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSEL 444 (577)
Q Consensus 405 ~I~vgg~~l~i~~~~~~~~~aIiDSGTt~i~lP~~~~~~l 444 (577)
.+.|+|+.+ .+.+|||++.+.++++.+..+
T Consensus 4 ~~~Ing~~i----------~~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPL----------KFQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEE----------EEEEcCCcceEEeCHHHHHHh
Confidence 356777754 589999999999998888765
No 44
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=53.16 E-value=19 Score=29.48 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=18.5
Q ss_pred ccEEEecccccccccHHHHHHH
Q 008104 423 GWALFDTGSSYTYFTKQAYSEL 444 (577)
Q Consensus 423 ~~aIiDSGTt~i~lP~~~~~~l 444 (577)
..++||||++.+.++.+..+.+
T Consensus 14 ~~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 14 VRFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEEECCCCcEEcCHHHHHHc
Confidence 4699999999999998876654
No 45
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=52.82 E-value=18 Score=30.40 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=20.7
Q ss_pred EEEecCCCceEEEEEECCCCceeEecC
Q 008104 205 YMIVGNPPRPYYLDMDTGSDLTWIQCD 231 (577)
Q Consensus 205 ~I~IGTPpQ~~~v~vDTGSs~tWV~~~ 231 (577)
++.|+ .|.+.+++|||+++|-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 35566 69999999999999999743
No 46
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=44.73 E-value=27 Score=32.87 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=22.8
Q ss_pred EEEEEecCCCceEEEEEECCCCceeEecC
Q 008104 203 FTYMIVGNPPRPYYLDMDTGSDLTWIQCD 231 (577)
Q Consensus 203 ~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~ 231 (577)
+..+.++.-..+++++|||||..-++...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 44555555678999999999999999754
No 47
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=43.30 E-value=24 Score=29.15 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=19.3
Q ss_pred ccEEEecccccccccHHHHHHH
Q 008104 423 GWALFDTGSSYTYFTKQAYSEL 444 (577)
Q Consensus 423 ~~aIiDSGTt~i~lP~~~~~~l 444 (577)
..+++|||.+.+.++++..+.+
T Consensus 10 ~~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 10 IVFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEEEECCCCeEEECHHHhhhc
Confidence 3589999999999999888775
No 48
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=41.89 E-value=1.1e+02 Score=32.46 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=32.2
Q ss_pred eE-EEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecC
Q 008104 519 IC-LGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSH 562 (577)
Q Consensus 519 ~C-l~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~ 562 (577)
.| +.++...+ -..+||.-.||.+--.-|++++++-|+...
T Consensus 307 ~c~ftV~d~~~----~d~llGLd~Lrr~~ccIdL~~~~L~ig~~~ 347 (380)
T KOG0012|consen 307 PCSFTVLDRRD----MDLLLGLDMLRRHQCCIDLKTNVLRIGNTE 347 (380)
T ss_pred ccceEEecCCC----cchhhhHHHHHhccceeecccCeEEecCCC
Confidence 47 67777652 346899999999999999999999887653
No 49
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=33.26 E-value=1.4e+02 Score=28.28 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=19.1
Q ss_pred CccEEEecccccccccHHHHHHHH
Q 008104 422 VGWALFDTGSSYTYFTKQAYSELI 445 (577)
Q Consensus 422 ~~~aIiDSGTt~i~lP~~~~~~l~ 445 (577)
...++||||+...+...++.+.|-
T Consensus 45 ~i~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 45 PIKVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEEEeCCCccceeehhhHHhhC
Confidence 357999999999998877766643
No 50
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=32.70 E-value=48 Score=32.35 Aligned_cols=28 Identities=36% Similarity=0.371 Sum_probs=20.7
Q ss_pred CCceEeChhhhccEEEEEECCCCEEEEEe
Q 008104 532 GSTIILGDISLRGQLVVYDNVNKRIGWAK 560 (577)
Q Consensus 532 ~~~~ILG~~FLr~~yvVFD~~~~rIGfA~ 560 (577)
+-..|||..|+|.|+=-...+ .+|-|-.
T Consensus 90 g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 90 GIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 345899999999887655554 5677765
No 51
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=31.84 E-value=32 Score=28.88 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.2
Q ss_pred ccEEEecccccccccHHH
Q 008104 423 GWALFDTGSSYTYFTKQA 440 (577)
Q Consensus 423 ~~aIiDSGTt~i~lP~~~ 440 (577)
..++||||+..+.++++.
T Consensus 17 i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 17 IKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEETTBSSEEESSGG
T ss_pred EEEEEecCCCcceecccc
Confidence 469999999999998653
No 52
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=27.36 E-value=34 Score=26.93 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 008104 82 PRKLFLFLAISIFALIL 98 (577)
Q Consensus 82 ~~~~~~~~~~~~~a~~~ 98 (577)
-+||++|.+|++|||-+
T Consensus 6 i~VLlaLvLIg~fAVqS 22 (71)
T PF04202_consen 6 IAVLLALVLIGSFAVQS 22 (71)
T ss_pred HHHHHHHHHHhhheeee
Confidence 46788889999998865
No 53
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=26.47 E-value=62 Score=27.26 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=19.9
Q ss_pred ccEEEecccccccccHHHHHHHH
Q 008104 423 GWALFDTGSSYTYFTKQAYSELI 445 (577)
Q Consensus 423 ~~aIiDSGTt~i~lP~~~~~~l~ 445 (577)
..+.+|||++...+|...|..+.
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhhc
Confidence 56899999999999988877764
No 54
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=24.19 E-value=88 Score=27.07 Aligned_cols=27 Identities=19% Similarity=0.041 Sum_probs=20.0
Q ss_pred EEEEecCCC----ceEEEEEECCCCcee-Eec
Q 008104 204 TYMIVGNPP----RPYYLDMDTGSDLTW-IQC 230 (577)
Q Consensus 204 ~~I~IGTPp----Q~~~v~vDTGSs~tW-V~~ 230 (577)
++|.|..|. -++.+++|||.+..- ++.
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~ 33 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPP 33 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCH
Confidence 577788773 368999999998665 543
No 55
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=24.02 E-value=48 Score=29.69 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=20.1
Q ss_pred ccEEEecccc-cccccHHHHHHHHHH
Q 008104 423 GWALFDTGSS-YTYFTKQAYSELIAS 447 (577)
Q Consensus 423 ~~aIiDSGTt-~i~lP~~~~~~l~~~ 447 (577)
...+||||-+ ++.+|.++++++-.-
T Consensus 27 ~~~LiDTGFtg~lvlp~~vaek~~~~ 52 (125)
T COG5550 27 YDELIDTGFTGYLVLPPQVAEKLGLP 52 (125)
T ss_pred eeeEEecCCceeEEeCHHHHHhcCCC
Confidence 3459999999 999999998875433
No 56
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=23.85 E-value=2.7e+02 Score=27.22 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=46.7
Q ss_pred CCCCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCcccCCCccEEEec-ccccccccHHHHHHHHHHH-Hhh
Q 008104 376 GHDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDT-GSSYTYFTKQAYSELIASL-KEV 451 (577)
Q Consensus 376 Gd~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~~~~~~aIiDS-GTt~i~lP~~~~~~l~~~i-~~~ 451 (577)
|+...+++.+.|--..-.. ..-.+++++|.+++.-+++ ...+.|+ |-.-+|+|........+.+ +.+
T Consensus 82 ~g~~IPkgt~l~G~~~~~~--~Rl~i~I~SI~~~~~IipV-------~L~vYD~DG~eGlyVP~s~~~~a~ke~~~~~ 150 (200)
T PF12508_consen 82 GGILIPKGTYLYGVASFQG--QRLLITITSIEYGGNIIPV-------ELSVYDLDGQEGLYVPNSAEREAAKEMAANA 150 (200)
T ss_pred CCEEeCCCCEEEEEEeeec--cEEEEEEEEEEECCEEEEE-------EEEEECCCCCcccccCCchHHHHHHHHHHHH
Confidence 4444455555554222222 5788999999999998876 3456665 7788999999988888888 544
No 57
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=20.27 E-value=1.6e+02 Score=26.43 Aligned_cols=29 Identities=17% Similarity=0.207 Sum_probs=22.4
Q ss_pred eEEEEEEecCCCceEEEEEECCCCceeEecC
Q 008104 201 LYFTYMIVGNPPRPYYLDMDTGSDLTWIQCD 231 (577)
Q Consensus 201 ~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~ 231 (577)
.+|+++.|+ .++++..+|||.-.+-+...
T Consensus 24 mLyI~~~in--g~~vkA~VDtGAQ~tims~~ 52 (124)
T PF09668_consen 24 MLYINCKIN--GVPVKAFVDTGAQSTIMSKS 52 (124)
T ss_dssp --EEEEEET--TEEEEEEEETT-SS-EEEHH
T ss_pred eEEEEEEEC--CEEEEEEEeCCCCccccCHH
Confidence 789999998 58999999999999999754
No 58
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=20.10 E-value=1.1e+02 Score=27.57 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=21.4
Q ss_pred EeeCCcceecCcccCCCccEEEecccccccccHHHHHH
Q 008104 406 INYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSE 443 (577)
Q Consensus 406 I~vgg~~l~i~~~~~~~~~aIiDSGTt~i~lP~~~~~~ 443 (577)
+.+||+.+ .|.||||+..+.++.+.++.
T Consensus 29 ~~ing~~v----------kA~VDtGAQ~tims~~~a~r 56 (124)
T PF09668_consen 29 CKINGVPV----------KAFVDTGAQSTIMSKSCAER 56 (124)
T ss_dssp EEETTEEE----------EEEEETT-SS-EEEHHHHHH
T ss_pred EEECCEEE----------EEEEeCCCCccccCHHHHHH
Confidence 56777654 69999999999999888777
Done!