Query 008104
Match_columns 577
No_of_seqs 276 out of 1425
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 18:12:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008104.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008104hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vla_A EDGP; extracellular, in 100.0 7.9E-58 2.7E-62 491.1 31.8 361 185-568 6-405 (413)
2 3psg_A Pepsinogen; hydrolase(a 100.0 1.4E-56 4.7E-61 475.2 28.0 314 187-562 45-370 (370)
3 2x0b_A Renin; hydrolase-hormon 100.0 6.5E-56 2.2E-60 471.6 26.0 314 187-562 50-383 (383)
4 1tzs_A Cathepsin E; hydrolase, 100.0 4.1E-55 1.4E-59 460.7 30.6 321 187-568 12-348 (351)
5 2apr_A Rhizopuspepsin; hydrola 100.0 9.2E-55 3.2E-59 453.4 32.8 309 186-562 4-324 (325)
6 1mpp_A Pepsin; hydrolase(acid 100.0 8.2E-55 2.8E-59 460.0 31.7 328 184-567 4-360 (361)
7 1j71_A Candidapepsin, aspartic 100.0 5E-55 1.7E-59 457.0 27.9 310 187-569 2-331 (334)
8 2qzx_A Candidapepsin-5; aspart 100.0 1.9E-54 6.5E-59 454.0 29.1 313 187-570 2-339 (342)
9 1am5_A Pepsin, acid proteinase 100.0 1.8E-54 6.1E-59 450.9 28.2 311 188-562 2-324 (324)
10 4aa9_A Chymosin; hydrolase, as 100.0 1.2E-54 4.2E-59 451.1 25.5 307 190-562 3-320 (320)
11 1dpj_A Proteinase A; proteinas 100.0 5.1E-54 1.8E-58 448.4 30.1 312 188-562 3-329 (329)
12 3cms_A Chymosin B; hydrolase, 100.0 2.9E-54 9.9E-59 449.2 27.8 310 187-562 3-323 (323)
13 3aup_A SBG7S, BG, basic 7S glo 100.0 8.3E-54 2.8E-58 459.0 31.3 355 186-570 8-401 (403)
14 3fv3_A SAPP1P-secreted asparti 100.0 1.4E-53 4.8E-58 446.6 32.2 311 187-570 2-337 (339)
15 1htr_B Gastricsin; aspartyl pr 100.0 3.9E-54 1.3E-58 449.2 26.9 311 190-562 5-329 (329)
16 3pvk_A Candidapepsin-2; hydrol 100.0 1.8E-53 6.2E-58 446.2 28.8 314 187-570 2-339 (342)
17 3c9x_A Trichoderma reesei aspa 100.0 2.5E-53 8.6E-58 443.3 29.6 303 197-561 12-329 (329)
18 3k1w_A Renin; protease, altern 100.0 9E-54 3.1E-58 448.3 25.4 316 185-562 5-340 (341)
19 1oew_A Endothiapepsin; hydrola 100.0 4.2E-53 1.4E-57 441.6 28.6 301 198-561 13-329 (329)
20 1t6e_X Xylanase inhibitor; two 100.0 1.1E-52 3.8E-57 447.0 29.7 345 187-563 2-374 (381)
21 2bju_A Plasmepsin II; aspartic 100.0 6E-53 2.1E-57 456.7 25.1 309 187-562 127-450 (453)
22 1miq_A Plasmepsin; aspartic pr 100.0 5.5E-53 1.9E-57 448.3 24.0 307 187-562 51-374 (375)
23 1ibq_A Aspergillopepsin; aspar 100.0 3.1E-52 1.1E-56 434.3 28.5 299 198-562 12-325 (325)
24 1izd_A Aspartic proteinase; su 100.0 2.2E-52 7.4E-57 435.2 26.1 297 198-562 13-323 (323)
25 1qdm_A Prophytepsin; aspartic 100.0 2.6E-52 9E-57 455.6 26.4 335 187-562 41-478 (478)
26 1yg9_A Aspartic protease BLA G 100.0 4E-52 1.4E-56 434.4 26.4 308 187-562 6-329 (330)
27 3qvc_A Histo-aspartic protease 100.0 1.1E-52 3.7E-57 455.0 22.4 308 187-562 126-449 (451)
28 2ewy_A Beta-secretase 2; BACE2 100.0 1.4E-51 4.9E-56 438.5 29.2 327 199-568 12-361 (383)
29 1bxo_A Protein (penicillopepsi 100.0 3.4E-52 1.1E-56 433.7 23.7 297 198-562 13-323 (323)
30 3lpj_A Beta-secretase 1; alzhe 100.0 1.4E-51 4.7E-56 448.4 28.5 329 199-569 73-427 (455)
31 3vf3_A Beta-secretase 1; struc 100.0 3.3E-51 1.1E-55 438.6 29.8 328 199-569 27-381 (402)
32 2qp8_A Beta-secretase 1; BACE1 100.0 4.4E-51 1.5E-55 436.6 28.5 325 199-569 20-374 (395)
33 1wkr_A Polyporopepsin; hydrola 100.0 4.4E-50 1.5E-54 420.5 29.4 304 189-568 4-339 (340)
34 1b5f_A Protein (cardosin A); h 100.0 8.4E-41 2.9E-45 333.3 19.7 225 189-448 4-236 (239)
35 1lya_B Cathepsin D; lysosomal 100.0 4E-36 1.4E-40 299.5 23.2 225 306-562 1-241 (241)
36 1lya_A Cathepsin D; lysosomal 99.8 6.4E-20 2.2E-24 156.6 9.3 89 188-302 3-95 (97)
37 1b5f_B Protein (cardosin A); h 99.5 1E-14 3.5E-19 121.7 8.4 73 484-562 12-87 (87)
38 3s8i_A Protein DDI1 homolog 1; 91.5 0.37 1.3E-05 43.3 6.9 36 534-576 108-143 (148)
39 3s8i_A Protein DDI1 homolog 1; 82.1 1.6 5.5E-05 39.1 5.2 29 201-231 24-52 (148)
40 2i1a_A DNA damage-inducible pr 80.6 4 0.00014 36.0 7.3 26 534-559 109-134 (148)
41 1fmb_A EIAV protease; hydrolas 71.8 3.6 0.00012 34.5 4.1 27 202-230 9-35 (104)
42 2hs1_A HIV-1 protease; ultra-h 70.7 4 0.00014 33.9 4.1 26 203-230 10-35 (99)
43 2i1a_A DNA damage-inducible pr 70.1 3.7 0.00013 36.2 4.1 31 199-231 24-54 (148)
44 3ec0_A Protease; HIV-2, inhibi 63.9 6.3 0.00022 32.7 3.9 27 203-231 10-36 (99)
45 3liy_A Protease; hydrolase, hy 63.3 6.4 0.00022 33.5 3.9 29 203-231 12-43 (116)
46 2hah_A Protease, retropepsin; 55.3 10 0.00035 32.4 3.9 24 206-231 18-41 (116)
47 3sqf_A Protease; folded monome 48.0 16 0.00055 31.0 3.9 27 203-231 11-37 (114)
48 3slz_A GAG-Pro-POL polyprotein 38.2 27 0.00092 30.5 3.9 29 201-231 22-50 (132)
49 3ka2_A [L-Ala51;Gly51']HIV-1 p 33.5 33 0.0011 32.2 3.9 27 202-230 9-35 (203)
50 2rsp_A RSV protease; hydrolase 29.8 38 0.0013 29.1 3.4 20 212-231 29-48 (124)
No 1
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=100.00 E-value=7.9e-58 Score=491.10 Aligned_cols=361 Identities=22% Similarity=0.353 Sum_probs=283.5
Q ss_pred CCceEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhh
Q 008104 185 DSSSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQ 264 (577)
Q Consensus 185 ~~~~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~ 264 (577)
.+.+.+||+++. .+++|+++|.||||||+|.|+|||||+++||+|. +| |..+..+.++|.++.|....
T Consensus 6 ~~~~~~pv~~d~-~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~-~c----------~~Sst~~~v~C~s~~C~~~~ 73 (413)
T 3vla_A 6 PSALVVPVKKDA-STLQYVTTINQRTPLVSENLVVDLGGRFLWVDCD-QN----------YVSSTYRPVRCRTSQCSLSG 73 (413)
T ss_dssp CSEEEEEEEECT-TTCCEEEEEEETTTTEEEEEEEETTCSSEEEECS-SS----------CCCTTCEECBTTSHHHHHTT
T ss_pred CccEEEEeeecC-CCCeEEEEEEcCCCCcceEEEEeCCChhhhcccC-CC----------CCCCCcCccCCCcccccccc
Confidence 467899998764 7899999999999999999999999999999987 65 22222234999999998765
Q ss_pred cCCCC--------CCCCCCCCceeEEEe-CCCCeEEEEEEEEEEEEeecCCC-----ccccceEEEEEEccCccccccCC
Q 008104 265 RNHKP--------GYCETCQQCDYEIEY-ADHSSSMGVLARDELHLTIENGS-----LTKPNVVFGCAYDQQGLLLNTLV 330 (577)
Q Consensus 265 ~~~~~--------~~c~~~~~~~~~i~Y-gdGs~~~G~~~~D~v~l~~~~g~-----~~~~~~~FG~a~~~~g~~~~~~~ 330 (577)
.. .+ ..|. .+.|.|.+.| ++|+.+.|++++|+|+|+..+|. +.++++.|||++.+..... ..
T Consensus 74 ~~-~~~~c~s~~~~~c~-~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~--~~ 149 (413)
T 3vla_A 74 SI-ACGDCFNGPRPGCN-NNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNL--AS 149 (413)
T ss_dssp CC-EEECCSSCCBTTBC-SSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTS--CT
T ss_pred cC-CCcccccCCCCCCC-CCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCc--cc
Confidence 32 11 1233 3579999999 58879999999999999765543 5788999999998632211 35
Q ss_pred ccceEEecCCCCCCChHHHHhcCCccceEEEEeecCCCCCeeEEeCCCCC-------CCCC-ceEEeCccCCC-------
Q 008104 331 KTDGILGLSRAKVSLPSQLASQGIIKNVVGHCLTTNAGGGGYMFLGHDLV-------PSWG-MAWVPMLDSPF------- 395 (577)
Q Consensus 331 ~~dGIlGLg~~~~S~~~qL~~~g~i~~~FSl~L~~~~~~~G~l~fGd~~~-------~~g~-l~~~pl~~~~~------- 395 (577)
.+|||||||++.+|++.||.+++.++++||+||.++...+|+|+||+... +.++ ++|+||+..+.
T Consensus 150 ~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~ 229 (413)
T 3vla_A 150 GVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATST 229 (413)
T ss_dssp TCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCC
T ss_pred ccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCcccccccc
Confidence 78999999999999999999998889999999998666789999996432 5677 99999987642
Q ss_pred ----CcceEEEEeEEeeCCcceecCcccC-----CCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCC
Q 008104 396 ----MELYHTEILKINYGSSPLNLGARNS-----QVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTL 465 (577)
Q Consensus 396 ----~~~w~V~l~~I~vgg~~l~i~~~~~-----~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~ 465 (577)
..+|.|+|++|.||++.+.++.... +...+||||||++++||+++|++|+++| +++....+.+.+....+
T Consensus 230 ~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~ 309 (413)
T 3vla_A 230 QGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPF 309 (413)
T ss_dssp TTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCTTC
T ss_pred ccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCCCC
Confidence 1599999999999999988764321 3478999999999999999999999999 76642223333333445
Q ss_pred ccccccCCCccccccccccceeEEEEEcccCceeeEEEEECCCccEEEeCCCceEEEEEcCCCCCCCCceEeChhhhccE
Q 008104 466 PVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHNGSTIILGDISLRGQ 545 (577)
Q Consensus 466 ~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~~l~p~~yl~~~~~g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~ 545 (577)
..|+..+.... ...+..+|+|+|+|+|+ ++.|+|++++|+++..++.+|++++.... ..+..||||+.|||++
T Consensus 310 ~~C~~~~~~~~--~~~~~~lP~i~f~f~g~----~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~-~~~~~~IlGd~fl~~~ 382 (413)
T 3vla_A 310 GACFSTDNILS--TRLGPSVPSIDLVLQSE----SVVWTITGSNSMVYINDNVVCLGVVDGGS-NLRTSIVIGGHQLEDN 382 (413)
T ss_dssp SCEEECTTCCE--ETTEECCCCEEEECSST----TCEEEECHHHHEEEEETTEEEECEEEEES-SCSSSEEECHHHHTTE
T ss_pred cceeccCCccc--cccccCCCcEEEEEcCC----cEEEEeCccceEEEeCCCcEEEEEEecCC-CcccceeEehhhhcCe
Confidence 66987642110 12234689999999982 28999999999998766789998887542 1246899999999999
Q ss_pred EEEEECCCCEEEEEecCCCCCCC
Q 008104 546 LVVYDNVNKRIGWAKSHCMNPGR 568 (577)
Q Consensus 546 yvVFD~~~~rIGfA~~~C~~~~~ 568 (577)
|+|||++++|||||++.+.....
T Consensus 383 ~vvfD~~~~riGfa~~~~~~~~~ 405 (413)
T 3vla_A 383 LVQFDLATSRVGFSGTLLGSRTT 405 (413)
T ss_dssp EEEEETTTTEEEEEEEGGGGTCC
T ss_pred EEEEECCCCEEEEEEecccCccc
Confidence 99999999999999976544433
No 2
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=100.00 E-value=1.4e-56 Score=475.21 Aligned_cols=314 Identities=24% Similarity=0.449 Sum_probs=260.1
Q ss_pred ceEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcC
Q 008104 187 SSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRN 266 (577)
Q Consensus 187 ~~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~ 266 (577)
....||. ++.+.+|+++|+||||||+|.|+|||||++|||+|. .|..|.|..++.|+|++|+| +...
T Consensus 45 ~~~~~l~--n~~d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~-~C~~~~C~~~~~y~~~~SsT----------~~~~ 111 (370)
T 3psg_A 45 IGDEPLE--NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSV-YCSSLACSDHNQFNPDDSST----------FEAT 111 (370)
T ss_dssp SCCCTTG--GGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBT-TCCSGGGTTSCCBCGGGCTT----------CEEE
T ss_pred cceecce--eccCCEEEEEEEEcCCCCEEEEEEeCCCCccEEECC-CCCCcccCCCCCCCCccCcC----------cEEC
Confidence 4556665 357889999999999999999999999999999998 99999999999999999985 3332
Q ss_pred CCCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCC---
Q 008104 267 HKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV--- 343 (577)
Q Consensus 267 ~~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~--- 343 (577)
.|.|.+.|++| .+.|.+++|+|+| |++.++++.|||++...+..+. ...+|||||||++.+
T Consensus 112 ----------~~~~~i~Yg~G-s~~G~~~~Dtv~i----g~~~v~~~~Fg~a~~~~~~~~~-~~~~dGIlGLg~~~~s~~ 175 (370)
T 3psg_A 112 ----------SQELSITYGTG-SMTGILGYDTVQV----GGISDTNQIFGLSETEPGSFLY-YAPFDGILGLAYPSISAS 175 (370)
T ss_dssp ----------EEEEEEESSSC-EEEEEEEEEEEEE----TTEEEEEEEEEEECSCCCGGGG-GCSCSEEEECSCGGGCGG
T ss_pred ----------CcEEEEEeCCc-eEEEEEEEEEEee----CCcccCCeEEEEEEeecccccc-cCCccceeccCCcccccc
Confidence 58899999999 5999999999999 8999999999999988765443 567899999999764
Q ss_pred ---CChHHHHhcCCc-cceEEEEeecCCCCCeeEEeC--CCCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCc
Q 008104 344 ---SLPSQLASQGII-KNVVGHCLTTNAGGGGYMFLG--HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGA 417 (577)
Q Consensus 344 ---S~~~qL~~~g~i-~~~FSl~L~~~~~~~G~l~fG--d~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~ 417 (577)
+++++|+++|+| +++||+||.++...+|.|+|| |..++.|+++|+|+... .+|.|.|++|.|+++.+..
T Consensus 176 ~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~g~l~~~pv~~~---~~w~v~l~~i~v~g~~~~~-- 250 (370)
T 3psg_A 176 GATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVE---GYWQITLDSITMDGETIAC-- 250 (370)
T ss_dssp GCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSEE---TTEEEEECEEESSSSEEEC--
T ss_pred CCCCHHHHHHHCCCCCCCEEEEEEccCCCCCeEEEEEeeChHhcCCcceeeccccc---ceeEEEEeEEEECCEEEec--
Confidence 478999999999 999999999876679999999 46788999999999876 5999999999999987753
Q ss_pred ccCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccC
Q 008104 418 RNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKW 496 (577)
Q Consensus 418 ~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~ 496 (577)
.....+||||||+++++|.+++++|.+++ +.....+ .+.++ |+.. ..+|+|+|+|+|
T Consensus 251 --~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~~g------~~~v~-C~~~-----------~~lP~i~f~~~g-- 308 (370)
T 3psg_A 251 --SGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDG------EMVIS-CSSI-----------DSLPDIVFTIDG-- 308 (370)
T ss_dssp --TTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEECTTC------CEECC-GGGG-----------GGCCCEEEEETT--
T ss_pred --CCCceEEEcCCCCcEECCHHHHHHHHHHhCCcccCCC------cEEEE-CCCc-----------ccCCcEEEEECC--
Confidence 34689999999999999999999999999 5432111 12234 7653 247999999987
Q ss_pred ceeeEEEEECCCccEEEeCCCceEEEEEcCCCC--CCCCceEeChhhhccEEEEEECCCCEEEEEecC
Q 008104 497 QIVSTKFHISPEGYLVISKKGNICLGILDGSEV--HNGSTIILGDISLRGQLVVYDNVNKRIGWAKSH 562 (577)
Q Consensus 497 ~~~~~~~~l~p~~yl~~~~~g~~Cl~i~~~~~~--~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~ 562 (577)
+.|+|++++|+++ ....|+..+...+. ..+..||||++|||++|+|||++++|||||+++
T Consensus 309 ----~~~~l~~~~yi~~--~~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfA~a~ 370 (370)
T 3psg_A 309 ----VQYPLSPSAYILQ--DDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 370 (370)
T ss_dssp ----EEEEECHHHHEEE--CSSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred ----EEEEECHHHhccc--CCCEEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCEEEEEEcC
Confidence 8999999999998 33469754433221 123469999999999999999999999999974
No 3
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=100.00 E-value=6.5e-56 Score=471.59 Aligned_cols=314 Identities=22% Similarity=0.404 Sum_probs=257.6
Q ss_pred ceEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCC--CCCCCCCcCCCCCCccccCCCcchhhhh
Q 008104 187 SSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSS--CAKGANPLYKPRMGNILPYKDSLCMEIQ 264 (577)
Q Consensus 187 ~~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~--C~~~~~~~ydps~Sstv~c~~~~c~~~~ 264 (577)
...+||.. +.+..|+++|.||||||+|.|+|||||+++||+|. .|.. ..|..|+.|||++|+| +.
T Consensus 50 ~~~~~l~n--~~~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~-~C~~~~~~C~~~~~y~~~~SsT----------~~ 116 (383)
T 2x0b_A 50 TSSVILTN--YMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSS-KCSRLYTACVYHKLFDASDSSS----------YK 116 (383)
T ss_dssp -CEEEEEE--ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBT-TSCTTSHHHHTSCCBCGGGCTT----------CE
T ss_pred cceEeeee--cCCCEEEEEEEECCCCcEEEEEEeCCCCCeEEecc-CCCCCcccccCCCCCCCCCCCc----------EE
Confidence 44578873 56889999999999999999999999999999998 8963 1234678999999985 33
Q ss_pred cCCCCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCC-
Q 008104 265 RNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV- 343 (577)
Q Consensus 265 ~~~~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~- 343 (577)
.. +|.|.+.|++| .+.|.+++|+|+| |++.++ +.|||++.+.+..+. ...+|||||||++.+
T Consensus 117 ~~----------~~~~~i~Yg~G-s~~G~~~~Dtv~i----g~~~v~-~~Fg~a~~~~g~~f~-~~~~dGIlGLg~~~~s 179 (383)
T 2x0b_A 117 HN----------GTELTLRYSTG-TVSGFLSQDIITV----GGITVT-QMFGEVTEMPALPFM-LAEFDGVVGMGFIEQA 179 (383)
T ss_dssp EE----------EEEEEEECSSC-EEEEEEEEEEEEE----TTEEEE-EEEEEEEECCHHHHT-TCSSSEEEECSCGGGC
T ss_pred EC----------CcEEEEEcCCc-cEEEEEEeeEEEE----cCceEE-EEEEEEEecCCcccc-cCCCceEeccCCCccc
Confidence 32 68999999999 5999999999999 889899 999999998765432 468899999999765
Q ss_pred -----CChHHHHhcCCc-cceEEEEeecCCCC----CeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCc
Q 008104 344 -----SLPSQLASQGII-KNVVGHCLTTNAGG----GGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSS 411 (577)
Q Consensus 344 -----S~~~qL~~~g~i-~~~FSl~L~~~~~~----~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~ 411 (577)
+++++|++||+| +++||+||.++... +|.|+||+ ..++.|+++|+|+... .+|+|.|++|.|+++
T Consensus 180 ~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~~~G~l~fGg~d~~~y~G~l~~~pv~~~---~~w~v~l~~i~v~~~ 256 (383)
T 2x0b_A 180 IGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKT---GVWQIQMKGVSVGSS 256 (383)
T ss_dssp GGGCCCHHHHHHTTTCCSSSEEEEEECCSCC----CCEEEEESSCCGGGEEEEEEEEEBSST---TSCEEEECEEEESSC
T ss_pred cCCCCcHHHHHHhCCCCCCCEEEEEEcCCCCcccCCCcEEEECCcChHHcCCceEEEEcCCC---ceEEEEEeEEEeCCc
Confidence 478999999999 99999999986443 89999995 5678899999999865 599999999999998
Q ss_pred ceecCcccCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEE
Q 008104 412 PLNLGARNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTL 490 (577)
Q Consensus 412 ~l~i~~~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f 490 (577)
.+. ...+..+||||||+++++|.+++++|.+++ +.. .. ..+.++ |+... .+|+|+|
T Consensus 257 ~~~----~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~-~~------g~~~v~-C~~~~-----------~~P~i~f 313 (383)
T 2x0b_A 257 TLL----CEDGCLALVDTGASYISGSTSSIEKLMEALGAKK-RL------FDYVVK-CNEGP-----------TLPDISF 313 (383)
T ss_dssp CCB----STTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE-CS------SCEEEE-GGGTT-----------TCCCEEE
T ss_pred eEE----cCCCcEEEEcCCCceEEcCHHHHHHHHHHhCCcc-cC------CcEEEe-ccccc-----------cCceEEE
Confidence 753 235689999999999999999999999999 443 11 112234 86532 4799999
Q ss_pred EEcccCceeeEEEEECCCccEEEeCC--CceEEE-EEcCCCC-CCCCceEeChhhhccEEEEEECCCCEEEEEecC
Q 008104 491 HFGSKWQIVSTKFHISPEGYLVISKK--GNICLG-ILDGSEV-HNGSTIILGDISLRGQLVVYDNVNKRIGWAKSH 562 (577)
Q Consensus 491 ~F~gg~~~~~~~~~l~p~~yl~~~~~--g~~Cl~-i~~~~~~-~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~ 562 (577)
+|+| +.|+|++++|+++... +..|+. +...... +.++.||||++|||++|+|||++++|||||+++
T Consensus 314 ~~~g------~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA~a~ 383 (383)
T 2x0b_A 314 HLGG------KEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 383 (383)
T ss_dssp EETT------EEEEECHHHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EECC------EEEEECHHHhEeeccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEeEEEcC
Confidence 9987 8999999999987542 468984 5543211 135689999999999999999999999999874
No 4
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=100.00 E-value=4.1e-55 Score=460.74 Aligned_cols=321 Identities=22% Similarity=0.373 Sum_probs=257.9
Q ss_pred ceEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcC
Q 008104 187 SSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRN 266 (577)
Q Consensus 187 ~~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~ 266 (577)
.+.+||.. +.++.|+++|.||||+|++.|+|||||+++||+|. .|..+.|..++.|||++|+| +..
T Consensus 12 ~~~~~l~n--~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~C~~~~C~~~~~y~~~~SsT----------~~~- 77 (351)
T 1tzs_A 12 SAKEPLIN--YLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSV-YCTSPACKTHSRFQPSQSST----------YSQ- 77 (351)
T ss_dssp --CCTTGG--GSSSCCCEEEEETTTTEEEEEEEETTCCCEEEEBT-TCCSGGGTTSCCBCGGGCTT----------CBC-
T ss_pred ccceecee--cCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecC-CCCccccCCCCcCCcccCcc----------eEE-
Confidence 34567763 46789999999999999999999999999999998 89865566789999999985 222
Q ss_pred CCCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCC---
Q 008104 267 HKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV--- 343 (577)
Q Consensus 267 ~~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~--- 343 (577)
..|.|.+.|++| .+.|.+++|+|+| |+..++++.|||++...+..+. ...++||||||++.+
T Consensus 78 ---------~~~~~~i~Yg~G-s~~G~~~~D~v~i----g~~~~~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~s~~ 142 (351)
T 1tzs_A 78 ---------PGQSFSIQYGTG-SLSGIIGADQVSV----EGLTVVGQQFGESVTEPGQTFV-DAEFDGILGLGYPSLAVG 142 (351)
T ss_dssp ---------CSCEEEEESSSC-EEEEEEEEEEEEE----TTEEEEEEEEEEECSCCCGGGG-GCSCSEEEECSCGGGSGG
T ss_pred ---------CCCEEEEEeCCC-CeEEEEEEeEEEE----CCeEECCeEEEEEEeccccccc-cCCCceEEecCCcccccc
Confidence 268999999999 5899999999999 8899999999999987665432 467899999999764
Q ss_pred ---CChHHHHhcCCc-cceEEEEeecCCCC--CeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceec
Q 008104 344 ---SLPSQLASQGII-KNVVGHCLTTNAGG--GGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNL 415 (577)
Q Consensus 344 ---S~~~qL~~~g~i-~~~FSl~L~~~~~~--~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i 415 (577)
+++++|+++|+| +++||+||.+.... +|.|+||+ ..++.|+++|+|+... .+|.|.|++|.|+++.+..
T Consensus 143 ~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~v~l~~i~v~~~~~~~ 219 (351)
T 1tzs_A 143 GVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWVPVTKQ---AYWQIALDNIQVGGTVMFC 219 (351)
T ss_dssp GCCCHHHHHHHTTCCSSSEEEEECCCCC--CTTCEEEETSCCGGGBCSCCEEEECSEE---TTEEEEEEEEEETTEEEEC
T ss_pred CCCcHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEECCCCHHHcCCceEEEecCCC---ceEEEEeCEEEECCceEEc
Confidence 478999999999 99999999976443 89999995 5678899999999865 5999999999999987542
Q ss_pred CcccCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcc
Q 008104 416 GARNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGS 494 (577)
Q Consensus 416 ~~~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~g 494 (577)
.....+||||||++++||.+++++|.+++ +.... ..+.++ |+.. ..+|+|+|+|+|
T Consensus 220 ----~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~-------g~~~~~-C~~~-----------~~~P~i~f~f~g 276 (351)
T 1tzs_A 220 ----SEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPVD-------GEYAVE-CANL-----------NVMPDVTFTING 276 (351)
T ss_dssp ----TTCEEEEECTTCSSEEECHHHHHHHHHHHTCEECS-------SSEEEC-GGGG-----------GGSCCEEEEETT
T ss_pred ----CCCceEEeccCCcceeCCHHHHHHHHHHhCCcccC-------CeEEEe-CCCC-----------ccCCcEEEEECC
Confidence 34578999999999999999999999999 54321 112234 8653 247999999976
Q ss_pred cCceeeEEEEECCCccEEEeC--CCceEEE-EEcCCCC-CCCCceEeChhhhccEEEEEECCCCEEEEEecCCCCCCC
Q 008104 495 KWQIVSTKFHISPEGYLVISK--KGNICLG-ILDGSEV-HNGSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGR 568 (577)
Q Consensus 495 g~~~~~~~~~l~p~~yl~~~~--~g~~Cl~-i~~~~~~-~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~C~~~~~ 568 (577)
+.|+|++++|+++.. ++..|+. +...... ...+.||||+.|||++|+|||++++|||||+++|....+
T Consensus 277 ------~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfA~~~~~s~~~ 348 (351)
T 1tzs_A 277 ------VPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPAVPWSHPQ 348 (351)
T ss_dssp ------EEEEECTTTSEECC-----CCEEESEEECCCCTTTCSCEEECHHHHHHEEEEEETTTTEEEEEEBC------
T ss_pred ------EEEEECHHHhEeeccCCCCCeEEEEEEECCCCCCCCCeEEEChHHhhheEEEEECCCCEEEEEECCcccchh
Confidence 899999999998753 2468975 5543211 135689999999999999999999999999999986443
No 5
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=100.00 E-value=9.2e-55 Score=453.39 Aligned_cols=309 Identities=23% Similarity=0.380 Sum_probs=257.9
Q ss_pred CceEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhc
Q 008104 186 SSSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQR 265 (577)
Q Consensus 186 ~~~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~ 265 (577)
+++.++.. +.++.|+++|.||||+|++.|+|||||+++||+|. +|..| |..++.|+|++|+| +..
T Consensus 4 ~~v~~~~~---~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~-~c~~c-~~~~~~y~~~~SsT----------~~~ 68 (325)
T 2apr_A 4 GTVPMTDY---GNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIAST-LCTNC-GSGQTKYDPNQSST----------YQA 68 (325)
T ss_dssp TEEEEEEE---TTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBT-TCSSC-CTTSCCBCGGGCTT----------CEE
T ss_pred Cceeeeec---CCCCEEEEEEEECCCCeEEEEEEcCCCCCEEEccC-CCchH-hcCCCCCCcccCCC----------eee
Confidence 45555543 35779999999999999999999999999999999 99999 88899999999985 222
Q ss_pred CCCCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCC--
Q 008104 266 NHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV-- 343 (577)
Q Consensus 266 ~~~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~-- 343 (577)
. .|.|.+.|++|+.+.|.+++|+|+| |+.+++++.|||++..++.+.. ..++||||||+..+
T Consensus 69 ~----------~~~~~i~Yg~Gs~~~G~~~~D~v~~----g~~~v~~~~fg~~~~~~~~f~~--~~~~GilGLg~~~~s~ 132 (325)
T 2apr_A 69 D----------GRTWSISYGDGSSASGILAKDNVNL----GGLLIKGQTIELAKREAASFAS--GPNDGLLGLGFDTITT 132 (325)
T ss_dssp E----------EEEEEEECTTSCEEEEEEEEEEEEE----TTEEEEEEEEEEEEEECHHHHT--SSCSEEEECSCGGGCS
T ss_pred C----------CCEEEEEECCCCCEEEEEEEEEEEE----CCEEECcEEEEEEeccCccccc--CCCceEEEeCCccccc
Confidence 2 5899999999988999999999999 8899999999999987765542 45899999999754
Q ss_pred -----CChHHHHhcCCc-cceEEEEeecC-CCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCccee
Q 008104 344 -----SLPSQLASQGII-KNVVGHCLTTN-AGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLN 414 (577)
Q Consensus 344 -----S~~~qL~~~g~i-~~~FSl~L~~~-~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~ 414 (577)
+++++|+++|+| +++||+||.+. ...+|.|+||+ ..++.|+++|+|+.... .+|.|.+++|+|++ .+.
T Consensus 133 ~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~--~~~~v~l~~i~vg~-~~~ 209 (325)
T 2apr_A 133 VRGVKTPMDNLISQGLISRPIFGVYLGKAKNGGGGEYIFGGYDSTKFKGSLTTVPIDNSR--GWWGITVDRATVGT-STV 209 (325)
T ss_dssp STTCCCHHHHHHHTTSCSSSEEEEEECCGGGTCCEEEEETCCCGGGBCSCCEEEECBCTT--SSCEEEECEEEETT-EEE
T ss_pred ccCCCCHHHHHHhcCCCCCceEEEEecCCCCCCCCEEEEccCCchhccCceEEEEccCCC--CEEEEEEeEEEECC-Eec
Confidence 478999999999 99999999753 35689999995 56788999999998654 69999999999999 332
Q ss_pred cCcccCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEc
Q 008104 415 LGARNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFG 493 (577)
Q Consensus 415 i~~~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~ 493 (577)
.....+||||||++++||+++|+++++++ +.+.+. ..+.++ |+. ..+|+|+|+|+
T Consensus 210 -----~~~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~~~------g~~~~~-C~~------------~~~p~i~f~f~ 265 (325)
T 2apr_A 210 -----ASSFDGILDTGTTLLILPNNIAASVARAYGASDNGD------GTYTIS-CDT------------SAFKPLVFSIN 265 (325)
T ss_dssp -----ECCEEEEECTTCSSEEEEHHHHHHHHHHHTCEECSS------SCEEEC-SCG------------GGCCCEEEEET
T ss_pred -----CCCceEEEecCCccEECCHHHHHHHHHHHhcccCCC------CeEEEE-CCC------------CCCCcEEEEEC
Confidence 24578999999999999999999999999 665432 112234 753 13799999999
Q ss_pred ccCceeeEEEEECCCccEEEeCCCceEEEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecC
Q 008104 494 SKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSH 562 (577)
Q Consensus 494 gg~~~~~~~~~l~p~~yl~~~~~g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~ 562 (577)
| .++.||+++|+++.. +..|++.+...+ .+.||||+.|||++|+|||++++|||||+++
T Consensus 266 g------~~~~ip~~~~~~~~~-~~~C~~~i~~~~---~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 324 (325)
T 2apr_A 266 G------ASFQVSPDSLVFEEF-QGQCIAGFGYGN---WGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324 (325)
T ss_dssp T------EEEEECGGGGEEEEE-TTEEEESEEEES---SSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred C------EEEEECHHHEEEcCC-CCeEEEEEEcCC---CCCEEECHHHhcceEEEEECCCCEEEEEecC
Confidence 8 589999999998654 678987654332 4679999999999999999999999999874
No 6
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=100.00 E-value=8.2e-55 Score=460.05 Aligned_cols=328 Identities=21% Similarity=0.313 Sum_probs=265.2
Q ss_pred CCCceEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCC-CCCCCCCCcCCCCCCccccCCCcchhh
Q 008104 184 VDSSSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCS-SCAKGANPLYKPRMGNILPYKDSLCME 262 (577)
Q Consensus 184 ~~~~~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~-~C~~~~~~~ydps~Sstv~c~~~~c~~ 262 (577)
.++...+||.. +.++.|+++|.||||+|++.|+|||||+++||+|. +|. ...|..++.|+|++|+|
T Consensus 4 ~g~~~~~~l~~--~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~C~~~~~y~~~~SsT---------- 70 (361)
T 1mpp_A 4 DGSVDTPGLYD--FDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHK-GCDNSEGCVGKRFFDPSSSST---------- 70 (361)
T ss_dssp -CCEEEEEEEE--TTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBT-TCCGGGTCCSSCCBCGGGCTT----------
T ss_pred CCccceEEeec--CCCCEEEEEEEECCCCcEEEEEEcCCCCCeEECCC-CCCCCccCCCCCcCCCccCCc----------
Confidence 35667789874 46789999999999999999999999999999998 898 33445688999999985
Q ss_pred hhcCCCCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCc-----cccccCCccceEEe
Q 008104 263 IQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQG-----LLLNTLVKTDGILG 337 (577)
Q Consensus 263 ~~~~~~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g-----~~~~~~~~~dGIlG 337 (577)
+... .|.|.+.|++| .+.|.+++|+|+| |+++++++.|||++...+ .++. ...++||||
T Consensus 71 ~~~~----------~~~~~i~Yg~G-s~~G~~~~D~v~~----g~~~v~~~~fg~~~~~~~~~~~~~~~~-~~~~~GilG 134 (361)
T 1mpp_A 71 FKET----------DYNLNITYGTG-GANGIYFRDSITV----GGATVKQQTLAYVDNVSGPTAEQSPDS-ELFLDGIFG 134 (361)
T ss_dssp CEEE----------EEEEEEECSSC-EEEEEEEEEEEEE----TTEEEEEEEEEEEEEEESGGGSSCTTC-SSCCCEEEE
T ss_pred eEec----------CCeEEEEECCc-eEEEEEEEEEEEE----CCEEEeceEEEEEEeccCccccccccc-cCCCCCEEE
Confidence 2222 58899999999 4899999999999 889999999999998766 3322 467899999
Q ss_pred cCCCC------------CCChHHHHhcCCc-cceEEEEeecCCCCCeeEEeCC--CCCCCCCceEEeCccCCC-CcceEE
Q 008104 338 LSRAK------------VSLPSQLASQGII-KNVVGHCLTTNAGGGGYMFLGH--DLVPSWGMAWVPMLDSPF-MELYHT 401 (577)
Q Consensus 338 Lg~~~------------~S~~~qL~~~g~i-~~~FSl~L~~~~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~-~~~w~V 401 (577)
||++. .+++++|+++|+| .++||+||.++ ..+|.|+||+ ..++.|+++|+|+..... ..+|.|
T Consensus 135 Lg~~~~s~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~~~v 213 (361)
T 1mpp_A 135 AAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTN-DGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDA 213 (361)
T ss_dssp CSCGGGSHHHHHHSCCCCCHHHHHHHTTSSSSSEEEEECCCS-SSEEEEEESSCCGGGBSSCCEEEECEEETTEEEEEEE
T ss_pred eCCcccccccccccccCCCHHHHHHHcCCCCCcEEEEEecCC-CCCcEEEEecCChhhcCCceEEEEcccCCCceeEEEE
Confidence 99964 4578899999999 99999999975 5689999995 567889999999987641 129999
Q ss_pred EEeEEeeCCcceecCcccCCCccEE-EecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccc
Q 008104 402 EILKINYGSSPLNLGARNSQVGWAL-FDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIV 479 (577)
Q Consensus 402 ~l~~I~vgg~~l~i~~~~~~~~~aI-iDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 479 (577)
.|++|.|+++.+.. .....+| |||||++++||+++|++|++++ +.+. .....+.++ |+..
T Consensus 214 ~l~~i~v~~~~~~~----~~~~~ai~iDSGTt~~~lP~~~~~~l~~~~~~~~~-----~~~g~~~~~-C~~~-------- 275 (361)
T 1mpp_A 214 PVTGVKIDGSDAVS----FDGAQAFTIDTGTNFFIAPSSFAEKVVKAALPDAT-----ESQQGYTVP-CSKY-------- 275 (361)
T ss_dssp EEEEEEETTEEEEE----EEEEEEEEEETTCCSEEEEHHHHHHHHHHHCTTCE-----EETTEEEEE-HHHH--------
T ss_pred EEeEEEECCeeecc----CCCCEEEEECCCCCceeCCHHHHHHHHHHhCCccc-----CCCCcEEEE-CCCc--------
Confidence 99999999987643 2347899 9999999999999999999999 6443 111112233 8653
Q ss_pred cccccc-eeEEEEE--cccCceeeEEEEECCCccEEEeC-CCceEE-EEEcCCCCCCCCceEeChhhhccEEEEEECCCC
Q 008104 480 DVKQFF-KTLTLHF--GSKWQIVSTKFHISPEGYLVISK-KGNICL-GILDGSEVHNGSTIILGDISLRGQLVVYDNVNK 554 (577)
Q Consensus 480 ~~~~~~-P~l~f~F--~gg~~~~~~~~~l~p~~yl~~~~-~g~~Cl-~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~ 554 (577)
..+ |.|+|+| ++ ....++.|+|++++|+++.. ++..|+ ++... ..+.||||++|||++|+|||++++
T Consensus 276 ---~~~~p~i~f~f~~g~-~~~~g~~~~i~~~~y~~~~~~~~~~C~~~i~~~----~~~~~iLG~~fl~~~yvvfD~~~~ 347 (361)
T 1mpp_A 276 ---QDSKTTFSLVLQKSG-SSSDTIDVSVPISKMLLPVDKSGETCMFIVLPD----GGNQFIVGNLFLRFFVNVYDFGKN 347 (361)
T ss_dssp ---TTCCCEEEEEEECTT-CSSCEEEEEEEGGGGEEECSSSSCEEEESEEEE----SSSCCEEEHHHHTTEEEEEETTTT
T ss_pred ---ccCCCcEEEEEEcCC-cCCCCeEEEECHHHhEEecCCCCCeeEEEEEeC----CCCCEEEChHHhccEEEEEECCCC
Confidence 235 9999999 62 01112899999999999864 356897 56553 246799999999999999999999
Q ss_pred EEEEEecCCCCCC
Q 008104 555 RIGWAKSHCMNPG 567 (577)
Q Consensus 555 rIGfA~~~C~~~~ 567 (577)
|||||+++|+.++
T Consensus 348 ~igfa~~~~~~~~ 360 (361)
T 1mpp_A 348 RIGFAPLASGYEN 360 (361)
T ss_dssp EEEEEEBCTTTCC
T ss_pred EEEEEEcccCCCC
Confidence 9999999999765
No 7
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=100.00 E-value=5e-55 Score=457.03 Aligned_cols=310 Identities=22% Similarity=0.327 Sum_probs=258.3
Q ss_pred ceEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCC-CCCCC-------CCCCCCcCCCCCCccccCCCc
Q 008104 187 SSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDA-PCSSC-------AKGANPLYKPRMGNILPYKDS 258 (577)
Q Consensus 187 ~~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~-~C~~C-------~~~~~~~ydps~Sstv~c~~~ 258 (577)
++.+||... ++.|+++|.||||||++.|+|||||+++||+|.. +|..| .|..++.|||++|+|
T Consensus 2 ~~~~~l~~~---~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT------ 72 (334)
T 1j71_A 2 DVPTTLINE---GPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSS------ 72 (334)
T ss_dssp CEEEEEEEC---SSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTT------
T ss_pred ceeEEEecC---CcEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccCCCcCCcccCCC------
Confidence 577888753 5699999999999999999999999999998641 46544 456788999999985
Q ss_pred chhhhhcCCCCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEec
Q 008104 259 LCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGL 338 (577)
Q Consensus 259 ~c~~~~~~~~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGL 338 (577)
+... .|.|.+.|++|+.+.|.+++|+|+| |+..++++.|||++.. ..++|||||
T Consensus 73 ----~~~~----------~~~~~i~Yg~Gs~~~G~~~~D~v~~----g~~~~~~~~fg~~~~~--------~~~~GilGL 126 (334)
T 1j71_A 73 ----AQNL----------NQDFSIEYGDLTSSQGSFYKDTVGF----GGISIKNQQFADVTTT--------SVDQGIMGI 126 (334)
T ss_dssp ----CEEE----------EEEEEEEBTTSCEEEEEEEEEEEEE----TTEEEEEEEEEEEEEE--------SSSSCEEEC
T ss_pred ----cccC----------CCceEEEECCCCEEEEEEEEEEEEE----CCEEEccEEEEEEEec--------CCCccEEEE
Confidence 3222 5899999999988999999999999 8889999999999875 257999999
Q ss_pred CCCCC--------CChHHHHhcCCc-cceEEEEeecCCCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEe
Q 008104 339 SRAKV--------SLPSQLASQGII-KNVVGHCLTTNAGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKIN 407 (577)
Q Consensus 339 g~~~~--------S~~~qL~~~g~i-~~~FSl~L~~~~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~ 407 (577)
|+... +++++|+++|+| +++||+||.+....+|.|+||+ ..++.|+++|+|+... .+|.|.|++|.
T Consensus 127 g~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~v~l~~i~ 203 (334)
T 1j71_A 127 GFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSEDASTGKIIFGGVDNAKYTGTLTALPVTSS---VELRVHLGSIN 203 (334)
T ss_dssp SCGGGSSTTCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSEEEEEEEEECCCS---SSCEEEEEEEE
T ss_pred cCCcccCccccCCcHHHHHHHCCCCCccEEEEEeCCCCCCCeEEEEeeechHHccCceEEEEccCC---CeEEEEEeEEE
Confidence 99754 688999999999 8999999997666799999994 5778899999999876 49999999999
Q ss_pred eCCcceecCcccCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccce
Q 008104 408 YGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFK 486 (577)
Q Consensus 408 vgg~~l~i~~~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P 486 (577)
|+++.+.. ...+||||||++++||+++|++|++++ ++++... ..+.+..|+. +|
T Consensus 204 v~g~~~~~------~~~~iiDSGTt~~~lP~~~~~~l~~~~~~~~~~~~-----~~~~~~~C~~--------------~p 258 (334)
T 1j71_A 204 FDGTSVST------NADVVLDSGTTITYFSQSTADKFARIVGATWDSRN-----EIYRLPSCDL--------------SG 258 (334)
T ss_dssp ETTEEEEE------EEEEEECTTCSSEEECHHHHHHHHHHHTCEEETTT-----TEEECSSSCC--------------CS
T ss_pred ECCEeccC------CccEEEeCCCCcEecCHHHHHHHHHHcCCcccCCC-----ceEEEEcCCC--------------CC
Confidence 99987754 367999999999999999999999999 6543111 1112123753 58
Q ss_pred eEEEEEcccCceeeEEEEECCCccEEEeCCCceEEEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecCCCCC
Q 008104 487 TLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNP 566 (577)
Q Consensus 487 ~l~f~F~gg~~~~~~~~~l~p~~yl~~~~~g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~C~~~ 566 (577)
.|+|+|+++ ++|+|++++|+++..++..|+..+... +.||||+.|||++|+|||++++|||||+++|+..
T Consensus 259 ~i~f~f~~g-----~~~~i~~~~y~~~~~~~~~C~~~i~~~-----~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~~ 328 (334)
T 1j71_A 259 DAVFNFDQG-----VKITVPLSELILKDSDSSICYFGISRN-----DANILGDNFLRRAYIVYDLDDKTISLAQVKYTSS 328 (334)
T ss_dssp EEEEEESTT-----CEEEEEGGGGEEECSSSSCEEESEEEC-----TTCEECHHHHTTEEEEEETTTTEEEEEEECCCSC
T ss_pred ceEEEEcCC-----cEEEECHHHheeecCCCCeeEEEEeEC-----CCcEEChHhhccEEEEEECCCCEEEEEecCCCCc
Confidence 999999765 899999999999865555797655432 3599999999999999999999999999999876
Q ss_pred CCC
Q 008104 567 GRF 569 (577)
Q Consensus 567 ~~~ 569 (577)
++.
T Consensus 329 ~~i 331 (334)
T 1j71_A 329 SDI 331 (334)
T ss_dssp CCE
T ss_pred cce
Confidence 554
No 8
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=100.00 E-value=1.9e-54 Score=454.00 Aligned_cols=313 Identities=22% Similarity=0.328 Sum_probs=257.9
Q ss_pred ceEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCC-CCCCC-------CCCCCCcCCCCCCccccCCCc
Q 008104 187 SSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDA-PCSSC-------AKGANPLYKPRMGNILPYKDS 258 (577)
Q Consensus 187 ~~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~-~C~~C-------~~~~~~~ydps~Sstv~c~~~ 258 (577)
++.+|+.. .++.|+++|.||||+|++.|+|||||+++||+|.. +|..| .|..++.|||++|+|
T Consensus 2 ~v~~~l~~---~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT------ 72 (342)
T 2qzx_A 2 PVAVTLHN---EAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRT------ 72 (342)
T ss_dssp CEEEEEEE---CSSCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGTTCCBCGGGCTT------
T ss_pred ceeEEEec---CCeEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccCCCcCCcccCCC------
Confidence 56788875 36799999999999999999999999999998541 46543 356788999999985
Q ss_pred chhhhhcCCCCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEec
Q 008104 259 LCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGL 338 (577)
Q Consensus 259 ~c~~~~~~~~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGL 338 (577)
+... .|.|.+.|++|+.+.|.+++|+|+| |+..++++.|||++.. ..++|||||
T Consensus 73 ----~~~~----------~~~~~i~Yg~Gs~~~G~~~~D~v~~----g~~~v~~~~fg~~~~~--------~~~~GilGL 126 (342)
T 2qzx_A 73 ----SQNL----------NTRFDIKYGDGSYAKGKLYKDTVGI----GGVSVRDQLFANVWST--------SARKGILGI 126 (342)
T ss_dssp ----CEEE----------EEEEEEECTTSCEEEEEEEEEEEEE----TTEEEEEEEEEEEEEE--------CSSSCEEEC
T ss_pred ----cccC----------CCcEEEEeCCCCeEEEEEEEEEEEE----CCEEecceEEEEEEec--------CCCcCEEEE
Confidence 3222 5899999999988999999999999 8889999999999875 257999999
Q ss_pred CCCCC--------CChHHHHhcCCc-cceEEEEeecCCCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEe
Q 008104 339 SRAKV--------SLPSQLASQGII-KNVVGHCLTTNAGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKIN 407 (577)
Q Consensus 339 g~~~~--------S~~~qL~~~g~i-~~~FSl~L~~~~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~ 407 (577)
|+... +++++|+++|+| +++||+||.+....+|.|+||+ ..++.|+++|+|+... .+|.|.|++|.
T Consensus 127 g~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~v~l~~i~ 203 (342)
T 2qzx_A 127 GFQSGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEASTGQIIFGGIDKAKYSGSLVDLPITSE---KKLTVGLRSVN 203 (342)
T ss_dssp SCGGGCSSSSCCCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEECCCS---SSCEEEEEEEE
T ss_pred ccccccCCCccCccHHHHHHHCCCcCccEEEEEeCCCCCCCeEEEECccchhhEecceEEEeccCC---ceEEEEEeEEE
Confidence 99754 688999999999 8999999997666789999994 5788999999999876 49999999999
Q ss_pred eCCcceecCcccCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccce
Q 008104 408 YGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFK 486 (577)
Q Consensus 408 vgg~~l~i~~~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P 486 (577)
|+++.+.. ...+||||||++++||+++|++|++++ +++.... .....+.++ |+. +|
T Consensus 204 v~g~~~~~------~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~~--~~~~~~~~~-C~~--------------~p 260 (342)
T 2qzx_A 204 VRGRNVDA------NTNVLLDSGTTISYFTRSIVRNILYAIGAQMKFDS--AGNKVYVAD-CKT--------------SG 260 (342)
T ss_dssp ETTEEEEE------EEEEEECTTCSSEEECHHHHHHHHHHHTCEEEECT--TSCEEEEEC-TTC--------------CC
T ss_pred ECCEecCC------CcCEEEeCCCCCEEcCHHHHHHHHHHhCCeeeecc--CCCcEEEEE-CCC--------------CC
Confidence 99987754 367999999999999999999999999 6542100 000012234 743 58
Q ss_pred eEEEEEcccCceeeEEEEECCCccEEEe-----CCCceEEEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEec
Q 008104 487 TLTLHFGSKWQIVSTKFHISPEGYLVIS-----KKGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKS 561 (577)
Q Consensus 487 ~l~f~F~gg~~~~~~~~~l~p~~yl~~~-----~~g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~ 561 (577)
.|+|+|+++ ++|+|++++|+++. .++..|+..+... +.||||+.|||++|+|||++++|||||++
T Consensus 261 ~i~f~f~~g-----~~~~i~~~~~~~~~~~~~~~~~~~C~~~i~~~-----~~~iLG~~fl~~~y~vfD~~~~~igfA~~ 330 (342)
T 2qzx_A 261 TIDFQFGNN-----LKISVPVSEFLFQTYYTSGKPFPKCEVRIRES-----EDNILGDNFLRSAYVVYNLDDKKISMAPV 330 (342)
T ss_dssp EEEEEETTT-----EEEEEEGGGGEECCBCTTSCBCSSEEESEEEC-----SSCEECHHHHTTEEEEEETTTTEEEEEEB
T ss_pred cEEEEECCC-----cEEEEcHHHhcccccccCCCCCCccEEEEecC-----CCcEeChHhhhcEEEEEECCCCEEEEEee
Confidence 999999765 99999999999863 2346898755533 35999999999999999999999999999
Q ss_pred CCCCCCCCc
Q 008104 562 HCMNPGRFK 570 (577)
Q Consensus 562 ~C~~~~~~~ 570 (577)
+|+..++..
T Consensus 331 ~~~~~~~i~ 339 (342)
T 2qzx_A 331 KYTSESDIV 339 (342)
T ss_dssp CCCSCCCEE
T ss_pred CCCCCCCeE
Confidence 998766544
No 9
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=100.00 E-value=1.8e-54 Score=450.89 Aligned_cols=311 Identities=21% Similarity=0.404 Sum_probs=258.1
Q ss_pred eEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCC
Q 008104 188 SIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNH 267 (577)
Q Consensus 188 ~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~ 267 (577)
+.+||.. +.++.|+++|.||||||++.|+|||||+++||+|. .|..+.|..++.|||++|+| +...
T Consensus 2 ~~~~l~n--~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~C~~~~~y~~~~SsT----------~~~~- 67 (324)
T 1am5_A 2 VTEQMKN--EADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSS-HCSAQACSNHNKFKPRQSST----------YVET- 67 (324)
T ss_dssp EEEEEEE--ETTTEEEEEEEETTTTEEEEEEEETTCCCEEECBT-TCCSHHHHTSCCBCGGGCTT----------CEEE-
T ss_pred ceeeeec--CCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecC-CCCcccccCCCcCCCccCCC----------eEeC-
Confidence 4567764 46789999999999999999999999999999998 89865556788999999985 2222
Q ss_pred CCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCC----
Q 008104 268 KPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV---- 343 (577)
Q Consensus 268 ~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~---- 343 (577)
.|.|++.|++| .+.|.+++|+|+| |+..++++.|||++...+..+. ...++||||||++.+
T Consensus 68 ---------~~~~~i~Yg~G-s~~G~~~~D~v~~----g~~~~~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~s~~~ 132 (324)
T 1am5_A 68 ---------GKTVDLTYGTG-GMRGILGQDTVSV----GGGSDPNQELGESQTEPGPFQA-AAPFDGILGLAYPSIAAAG 132 (324)
T ss_dssp ---------EEEEEEECSSC-EEEEEEEEEEEES----SSSCEEEEEEEEEEECCSTTTT-TCSSSEEEECSCGGGCGGG
T ss_pred ---------CcEEEEEECCC-CeEEEEEECceeE----CCcEEcccEEEEEEeccccccc-CCCCceEEecCCccccccC
Confidence 58999999999 6799999999999 8899999999999988665432 467899999999754
Q ss_pred --CChHHHHhcCCc-cceEEEEeecCCCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCcc
Q 008104 344 --SLPSQLASQGII-KNVVGHCLTTNAGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGAR 418 (577)
Q Consensus 344 --S~~~qL~~~g~i-~~~FSl~L~~~~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~ 418 (577)
+++++|+++|+| +++||+||.+....+|.|+||+ ..++.|+++|+|+... .+|.|.|++|.|+++.+..
T Consensus 133 ~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~v~l~~i~v~~~~~~~--- 206 (324)
T 1am5_A 133 AVPVFDNMGSQSLVEKDLFSFYLSGGGANGSEVMLGGVDNSHYTGSIHWIPVTAE---KYWQVALDGITVNGQTAAC--- 206 (324)
T ss_dssp CCCHHHHHHHTTCSSSSEEEEECCSTTCSCEEEEESSCCGGGBCSCCEEEEEEEE---TTEEEEECEEEETTEECCC---
T ss_pred CCchHHhHHhcCCCCCCEEEEEecCCCCCCcEEEECccCHHHcCCceEEEecCCC---cEEEEEEeEEEECCceeec---
Confidence 478999999999 9999999998666699999995 5678899999999865 5999999999999986532
Q ss_pred cCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCc
Q 008104 419 NSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQ 497 (577)
Q Consensus 419 ~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~ 497 (577)
.+ ..+||||||++++||++++++|.+++ +. ... ..+.++ |+.. +.+|+|+|+|+|
T Consensus 207 -~~-~~aiiDSGTt~~~lp~~~~~~l~~~~~~~-~~~------g~~~~~-C~~~-----------~~~P~i~f~f~g--- 262 (324)
T 1am5_A 207 -EG-CQAIVDTGTSKIVAPVSALANIMKDIGAS-ENQ------GEMMGN-CASV-----------QSLPDITFTING--- 262 (324)
T ss_dssp -CC-EEEEECTTCSSEEECTTTHHHHHHHHTCE-ECC------CCEECC-TTSS-----------SSSCCEEEEETT---
T ss_pred -cC-ceEEEecCCccEECCHHHHHHHHHHhCCc-ccC------CcEEEe-CCCc-----------ccCCcEEEEECC---
Confidence 23 88999999999999999999999999 54 211 112234 8653 247999999976
Q ss_pred eeeEEEEECCCccEEEeCCCceEE-EEEcCCCC-CCCCceEeChhhhccEEEEEECCCCEEEEEecC
Q 008104 498 IVSTKFHISPEGYLVISKKGNICL-GILDGSEV-HNGSTIILGDISLRGQLVVYDNVNKRIGWAKSH 562 (577)
Q Consensus 498 ~~~~~~~l~p~~yl~~~~~g~~Cl-~i~~~~~~-~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~ 562 (577)
+.|+|++++|+++. +..|+ ++...... ...+.||||+.|||++|+|||++++|||||+++
T Consensus 263 ---~~~~i~~~~y~~~~--~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~a~ 324 (324)
T 1am5_A 263 ---VKQPLPPSAYIEGD--QAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPAA 324 (324)
T ss_dssp ---EEEEECHHHHEEES--SSCEEECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEEBC
T ss_pred ---EEEEECHHHhcccC--CCeEEEEEEECccCCCCCCcEEEChHHhccEEEEEECCCCEEEEEECC
Confidence 89999999999975 67897 45543211 124689999999999999999999999999974
No 10
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=100.00 E-value=1.2e-54 Score=451.08 Aligned_cols=307 Identities=22% Similarity=0.412 Sum_probs=255.7
Q ss_pred eeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCC
Q 008104 190 FPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKP 269 (577)
Q Consensus 190 ~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~ 269 (577)
.||. ++.+..|+++|.||||||++.|+|||||+++||+|. .|..|.|..++.|||++|+| +...
T Consensus 3 ~~l~--n~~d~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~-~C~~~~C~~~~~y~~~~SsT----------~~~~--- 66 (320)
T 4aa9_A 3 EPLT--SYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSI-YCKSNVCKNHHRFDPRKSST----------FRNL--- 66 (320)
T ss_dssp -------CCCCCCEEEEEETTTTEEEEEEEETTCCCEEEEBT-TCCSHHHHTSCCBCGGGCTT----------CEEE---
T ss_pred ccce--eccCCEEEEEEEECCCCeEEEEEEeCCCCceEEcCC-CCCccccCCCCCCCCCCCcC----------eEcC---
Confidence 3554 356889999999999999999999999999999998 89887777889999999985 3222
Q ss_pred CCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCC------C
Q 008104 270 GYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAK------V 343 (577)
Q Consensus 270 ~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~------~ 343 (577)
.|.|.+.|++| .+.|.+++|+|+| |+.+++++.|||++...+..+. ...++||||||++. .
T Consensus 67 -------~~~~~i~Yg~g-s~~G~~~~D~v~i----g~~~v~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~s~~~~~ 133 (320)
T 4aa9_A 67 -------GKPLSIHYGTG-SMEGFLGYDTVTV----SNIVDPNQTVGLSTEQPGEVFT-YSEFDGILGLAYPSLASEYSV 133 (320)
T ss_dssp -------EEEEEEEETTE-EEEEEEEEEEEEE----TTEEEEEEEEEEEEECCSHHHH-SCCCSEEEECSCGGGSCTTCC
T ss_pred -------CcEEEEEECCc-EEEEEEEEEEEEE----CCEeecCeEEEEEEEccccccc-ccCcccEEecCcccccccCCC
Confidence 58899999999 5899999999999 8899999999999988764332 45789999999865 3
Q ss_pred CChHHHHhcCCc-cceEEEEeecCCCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCcccC
Q 008104 344 SLPSQLASQGII-KNVVGHCLTTNAGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420 (577)
Q Consensus 344 S~~~qL~~~g~i-~~~FSl~L~~~~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~~ 420 (577)
+++++|+++|.| +++||+||.++ ..+|.|+||+ ..++.|+++|+|+... .+|.|.+++|.|+++.+.. .
T Consensus 134 ~~~~~l~~~g~i~~~~Fs~~l~~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~w~v~l~~i~v~~~~~~~----~ 205 (320)
T 4aa9_A 134 PVFDNMMDRHLVARDLFSVYMDRN-GQGSMLTLGAIDPSYYTGSLHWVPVTLQ---QYWQFTVDSVTINGVAVAC----V 205 (320)
T ss_dssp CHHHHHHHTTCSSSSEEEEECCSS-SSCCEEEETCCCGGGEEEEEEEEECSSB---TTBEEEECEEEETTEEEES----T
T ss_pred CHHHHHHhCCCCCCceEEEEeCCC-CCCeEEEEcccCHHHccCceEEEEcccC---CceEEEEeEEEECCEEecc----C
Confidence 478999999999 99999999976 6789999994 5678899999999865 5999999999999987764 2
Q ss_pred CCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCcee
Q 008104 421 QVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIV 499 (577)
Q Consensus 421 ~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~ 499 (577)
....+||||||++++||++++++|++++ +.....+ .+.++ |+.. ..+|+|+|+|+|
T Consensus 206 ~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~~~g------~~~~~-C~~~-----------~~~p~i~f~f~g----- 262 (320)
T 4aa9_A 206 GGCQAILDTGTSVLFGPSSDILKIQMAIGATENRYG------EFDVN-CGNL-----------RSMPTVVFEING----- 262 (320)
T ss_dssp TCEEEEECTTCSSEEEEHHHHHHHHHHTTCEECTTS------CEEEC-GGGG-----------GGCCCEEEEETT-----
T ss_pred CCcEEEEECCCCcEECCHHHHHHHHHHhCCcccCCC------cEEEe-CCCC-----------CcCceEEEEECC-----
Confidence 4578999999999999999999999999 5433111 12234 7653 247999999987
Q ss_pred eEEEEECCCccEEEeCCCceEEE-EEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecC
Q 008104 500 STKFHISPEGYLVISKKGNICLG-ILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSH 562 (577)
Q Consensus 500 ~~~~~l~p~~yl~~~~~g~~Cl~-i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~ 562 (577)
+.|+|++++|+.+ ++..|+. +.... .++.||||++|||++|+|||++++|||||+++
T Consensus 263 -~~~~l~~~~y~~~--~~~~C~~~i~~~~---~~~~~ilG~~fl~~~y~vfD~~~~~igfA~a~ 320 (320)
T 4aa9_A 263 -RDYPLSPSAYTSK--DQGFCTSGFQGDN---NSELWILGDVFIREYYSVFDRANNRVGLAKAI 320 (320)
T ss_dssp -EEEEECHHHHEEE--ETTEEEESEEEET---TCCCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred -EEEEECHHHhccC--CCCeEEEEEEcCC---CCCcEEEChHHhcceEEEEECCCCEEEEEecC
Confidence 8999999999986 4568975 55532 34679999999999999999999999999974
No 11
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=100.00 E-value=5.1e-54 Score=448.36 Aligned_cols=312 Identities=25% Similarity=0.396 Sum_probs=256.4
Q ss_pred eEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCC
Q 008104 188 SIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNH 267 (577)
Q Consensus 188 ~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~ 267 (577)
..+||.. +.++.|+++|.||||||++.|+|||||+++||+|. +|..|.|..++.|||++|+| +...
T Consensus 3 ~~~~l~~--~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~-~C~~~~C~~~~~y~~~~SsT----------~~~~- 68 (329)
T 1dpj_A 3 HDVPLTN--YLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSN-ECGSLACFLHSKYDHEASSS----------YKAN- 68 (329)
T ss_dssp EEEECEE--ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBT-TCCSHHHHTSCCBCGGGCTT----------CEEE-
T ss_pred cceeeee--cCCCEEEEEEEECCCCcEEEEEEeCCCcCeEEecC-CCCCcccCCcCcCCcccCcC----------eEEC-
Confidence 3466763 45789999999999999999999999999999999 89886667788999999985 2222
Q ss_pred CCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCCC---
Q 008104 268 KPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVS--- 344 (577)
Q Consensus 268 ~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~S--- 344 (577)
.|.|.+.|++| .+.|.+++|+|+| |+.+++++.|||++...+..+. ...++||||||+..++
T Consensus 69 ---------~~~~~i~Yg~G-s~~G~~~~D~v~i----g~~~~~~~~fg~~~~~~~~~f~-~~~~~GilGLg~~~~s~~~ 133 (329)
T 1dpj_A 69 ---------GTEFAIQYGTG-SLEGYISQDTLSI----GDLTIPKQDFAEATSEPGLTFA-FGKFDGILGLGYDTISVDK 133 (329)
T ss_dssp ---------EEEEEEEETTE-EEEEEEEEEEEEE----TTEEEEEEEEEEEEECCHHHHT-TCSCSEEEECSCGGGCGGG
T ss_pred ---------CcEEEEEECCc-eEEEEEEEEEEEE----CCeEECCeEEEEEEecCccccc-cCCcceEEEeCCchhhccC
Confidence 68999999999 8999999999999 8899999999999987663222 3578999999997654
Q ss_pred ---ChHHHHhcCCc-cceEEEEeecCC---CCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceec
Q 008104 345 ---LPSQLASQGII-KNVVGHCLTTNA---GGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNL 415 (577)
Q Consensus 345 ---~~~qL~~~g~i-~~~FSl~L~~~~---~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i 415 (577)
++++|+++|+| +++||+||.+.. ..+|.|+||+ ..++.|+++|+|+... .+|.|.|++|.|+++.+..
T Consensus 134 ~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~v~l~~i~v~~~~~~~ 210 (329)
T 1dpj_A 134 VVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRK---AYWEVKFEGIGLGDEYAEL 210 (329)
T ss_dssp CCCHHHHHHHTTCCSSSEEEEEECCGGGTCSSSEEEEESSCCGGGEEEEEEEEECSSB---TTBEEEEEEEEETTEEEEC
T ss_pred CCCHHHHHHhcCCcCCCEEEEEecCCCCCCCCCcEEEEcCCChhhcCCceEEEEcCCC---ceEEEEeeeEEECCeEecC
Confidence 57899999999 899999998642 3479999995 4678899999999865 5999999999999987753
Q ss_pred CcccCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcc
Q 008104 416 GARNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGS 494 (577)
Q Consensus 416 ~~~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~g 494 (577)
....+||||||++++||++++++|.+++ +.... ...+.++ |+.. ..+|+|+|+|+|
T Consensus 211 -----~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~------~g~~~~~-C~~~-----------~~~P~i~f~f~g 267 (329)
T 1dpj_A 211 -----ESHGAAIDTGTSLITLPSGLAEMINAEIGAKKGW------TGQYTLD-CNTR-----------DNLPDLIFNFNG 267 (329)
T ss_dssp -----SSCEEEECTTCSCEEECHHHHHHHHHHHTCEECT------TSSEEEC-GGGG-----------GGCCCEEEEETT
T ss_pred -----CCccEEeeCCCCcEECCHHHHHHHHHHhCCccCC------CCeEEEE-CCCC-----------CcCCcEEEEECC
Confidence 3578999999999999999999999999 44211 1112234 7542 348999999987
Q ss_pred cCceeeEEEEECCCccEEEeCCCceEEE-EEcCCCC-CCCCceEeChhhhccEEEEEECCCCEEEEEecC
Q 008104 495 KWQIVSTKFHISPEGYLVISKKGNICLG-ILDGSEV-HNGSTIILGDISLRGQLVVYDNVNKRIGWAKSH 562 (577)
Q Consensus 495 g~~~~~~~~~l~p~~yl~~~~~g~~Cl~-i~~~~~~-~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~ 562 (577)
+.|+|++++|+++.. ..|+. +...... ..++.||||+.|||++|+|||++++|||||+++
T Consensus 268 ------~~~~i~~~~y~~~~~--~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 329 (329)
T 1dpj_A 268 ------YNFTIGPYDYTLEVS--GSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI 329 (329)
T ss_dssp ------EEEEECTTTSEEEET--TEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred ------EEEEECHHHhEecCC--CEEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEEEEECC
Confidence 899999999999754 68974 5443211 235689999999999999999999999999874
No 12
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=100.00 E-value=2.9e-54 Score=449.21 Aligned_cols=310 Identities=20% Similarity=0.372 Sum_probs=254.8
Q ss_pred ceEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcC
Q 008104 187 SSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRN 266 (577)
Q Consensus 187 ~~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~ 266 (577)
....||.. +.++.|+++|.||||||++.|+|||||+++||+|. .|....|..++.|||++|+| +...
T Consensus 3 ~~~~~l~n--~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~C~~~~~y~~~~SsT----------~~~~ 69 (323)
T 3cms_A 3 VASVPLTN--YLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSI-YCKSNACKNHQRFDPRKSST----------FQNL 69 (323)
T ss_dssp CEEEEEEE--ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBT-TCCSHHHHTSCCBCGGGCTT----------CEEE
T ss_pred cceeeeEe--ccCCEEEEEEEECCCCeEEEEEEeCCccceEEcCC-CCCcccccCCCCCCCccCCC----------eEEC
Confidence 34567763 46789999999999999999999999999999998 89544445788999999985 2222
Q ss_pred CCCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCC---
Q 008104 267 HKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV--- 343 (577)
Q Consensus 267 ~~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~--- 343 (577)
.|.|.+.|++| .+.|.+++|+|+| |+.+++++.|||++...+..+. ...++||||||++.+
T Consensus 70 ----------~~~~~i~Yg~G-s~~G~~~~D~v~i----g~~~~~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~s~~ 133 (323)
T 3cms_A 70 ----------GKPLSIHYGTG-SMQGILGYDTVTV----SNIVDIQQTVGLSTQEPGDFFT-YAEFDGILGMAYPSLASE 133 (323)
T ss_dssp ----------EEEEEEEETTE-EEEEEEEEEEEEE----TTEEEEEEEEEEEEECCSHHHH-HSSCSEEEECSCGGGSCT
T ss_pred ----------CcEEEEEeCCC-CeEEEEEEEEEEE----CCeEEeccEEEEEEeccccccc-ccCCceEEecCcchhhcc
Confidence 58899999999 5899999999999 8899999999999987653322 357899999999754
Q ss_pred ---CChHHHHhcCCc-cceEEEEeecCCCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCc
Q 008104 344 ---SLPSQLASQGII-KNVVGHCLTTNAGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGA 417 (577)
Q Consensus 344 ---S~~~qL~~~g~i-~~~FSl~L~~~~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~ 417 (577)
+++++|+++|.| +++||+||.+.... |.|+||+ ..++.|++.|+|+... .+|.|.|++|.|+++.+.+
T Consensus 134 ~~~~~~~~l~~q~~i~~~~FS~~l~~~~~~-G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~v~l~~i~v~~~~~~~-- 207 (323)
T 3cms_A 134 YSIPVFDNMMNRHLVAQDLFSVYMDRNGQE-SMLTLGAIDPSYYTGSLHWVPVTVQ---QYWQFTVDSVTISGVVVAC-- 207 (323)
T ss_dssp TCCCHHHHHHHTTCSSSSEEEEECCTTSSC-EEEEESCCCGGGEEEEEEEEECSSB---TTBEEEEEEEEETTEEEES--
T ss_pred CCCCHHHHHHHCCCCCCCEEEEEECCCCCC-EEEEECCCChhhccCceEEEECccC---CeEEEEEeeEEECCEEeec--
Confidence 478999999999 99999999976443 9999995 4677899999999865 5999999999999987754
Q ss_pred ccCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccC
Q 008104 418 RNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKW 496 (577)
Q Consensus 418 ~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~ 496 (577)
.....+||||||++++||++++++|.+++ +...... .+.++ |+... .+|+|+|+|+|
T Consensus 208 --~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~g------~~~~~-C~~~~-----------~~P~i~f~f~g-- 265 (323)
T 3cms_A 208 --EGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYG------EFDID-CDNLS-----------YMPTVVFEING-- 265 (323)
T ss_dssp --TTCEEEEECTTCCSEEECHHHHHHHHHHHTCEEETTT------EEEEC-TTCTT-----------TSCCEEEEETT--
T ss_pred --CCCcEEEEecCCccEeCCHHHHHHHHHHhCCeecCCC------cEEEE-CCCCc-----------cCceEEEEECC--
Confidence 24578999999999999999999999999 5432111 11233 76532 47999999976
Q ss_pred ceeeEEEEECCCccEEEeCCCceEEE-EEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecC
Q 008104 497 QIVSTKFHISPEGYLVISKKGNICLG-ILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSH 562 (577)
Q Consensus 497 ~~~~~~~~l~p~~yl~~~~~g~~Cl~-i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~ 562 (577)
+.|+|++++|+++ ++..|+. +.... .++.||||+.|||++|+|||++++|||||+++
T Consensus 266 ----~~~~i~~~~y~~~--~~~~C~~~i~~~~---~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 323 (323)
T 3cms_A 266 ----KMYPLTPSAYTSQ--DQGFCTSGFQSEN---HSQKWILGDVFIREYYSVFDRANNLVGLAKAI 323 (323)
T ss_dssp ----EEEEECHHHHEEE--ETTEEEESEEEC------CCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred ----EEEEECHHHhccC--CCCEEEEEEEeCC---CCCcEEECHHHhhceEEEEECCCCEEEEEECC
Confidence 8999999999998 4578975 55432 34689999999999999999999999999874
No 13
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=100.00 E-value=8.3e-54 Score=458.95 Aligned_cols=355 Identities=20% Similarity=0.355 Sum_probs=268.5
Q ss_pred CceEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhc
Q 008104 186 SSSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQR 265 (577)
Q Consensus 186 ~~~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~ 265 (577)
+.+.+||.++ +.+++|+++|.||||||++.|+|||||++|||+|. +| |..+....++|.+..|.....
T Consensus 8 ~~~~~pl~~~-~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~-~~----------~~Sst~~~~~C~s~~C~~~~~ 75 (403)
T 3aup_A 8 NLVVLPVQND-GSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCE-QQ----------YSSKTYQAPFCHSTQCSRANT 75 (403)
T ss_dssp CCEEEEEEEC-TTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECS-SC----------CCCSSCBCCCTTBHHHHHTTC
T ss_pred ccEEEeeecC-CCCceEEEEEECCCCCceeEEEEECCCCceeECCC-CC----------CCCCCCCccCCCCccccCccc
Confidence 5678999864 36889999999999999999999999999999987 54 222222347999999987643
Q ss_pred C------C-CCCCCCCCCCceeEEEeC-CCCeEEEEEEEEEEEEeecCCC-------ccccceEEEEEEccCcc-ccccC
Q 008104 266 N------H-KPGYCETCQQCDYEIEYA-DHSSSMGVLARDELHLTIENGS-------LTKPNVVFGCAYDQQGL-LLNTL 329 (577)
Q Consensus 266 ~------~-~~~~c~~~~~~~~~i~Yg-dGs~~~G~~~~D~v~l~~~~g~-------~~~~~~~FG~a~~~~g~-~~~~~ 329 (577)
. . ....|. .+.|.|.+.|+ +|+.+.|.+++|+|+|+..+|. +.++++.|||++.+... +. .
T Consensus 76 ~~c~~c~~~~~s~~~-~~~~~~~~~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~~--~ 152 (403)
T 3aup_A 76 HQCLSCPAASRPGCH-KNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGL--P 152 (403)
T ss_dssp CCEEECSSSCBTTBC-SSEEEEEEEETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSSS--S
T ss_pred cCccccCCCCCCCCC-CCcceeEeecCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccccCC--C
Confidence 2 0 112343 25899999998 7879999999999999653332 67899999999987543 22 3
Q ss_pred CccceEEecCCCCCCChHHHHhcCCccceEEEEeecCCCCCeeEEeCC-CCCC--C-C-----CceEEeCccCCCCcceE
Q 008104 330 VKTDGILGLSRAKVSLPSQLASQGIIKNVVGHCLTTNAGGGGYMFLGH-DLVP--S-W-----GMAWVPMLDSPFMELYH 400 (577)
Q Consensus 330 ~~~dGIlGLg~~~~S~~~qL~~~g~i~~~FSl~L~~~~~~~G~l~fGd-~~~~--~-g-----~l~~~pl~~~~~~~~w~ 400 (577)
..++||||||++.++++.||.+..+.+++||+||.+....+|.|+||+ ..++ . | ++.|+|++..+. .+|.
T Consensus 153 ~~~dGIlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~~~~~G~l~fGgd~~~~~~~~G~~~~~~l~~~Pl~~~~~-~~y~ 231 (403)
T 3aup_A 153 RNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQ-GEYN 231 (403)
T ss_dssp TTCCEEEECSSSTTSHHHHHHHHHTCCSEEEEECCSCTTSCEEEEESCHHHHC--CTTCCTTTTEEEEECEECTT-SCEE
T ss_pred CCCceEEECCCCCcCHHHHHHhhcCCCCeEEEEcCCCCCCCeeEEECCCchhccccccccccCceeecccccCCC-Ccce
Confidence 678999999999999999997655448999999998666799999996 3344 3 4 999999997632 5999
Q ss_pred EEEeEEeeCCcce-ecCcccC-----CCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCC
Q 008104 401 TEILKINYGSSPL-NLGARNS-----QVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKF 473 (577)
Q Consensus 401 V~l~~I~vgg~~l-~i~~~~~-----~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~ 473 (577)
|.|++|.|+++.+ .++.... +...+||||||++++||+++|++|+++| +++.. +........+..|+..+.
T Consensus 232 v~l~~i~v~g~~~~~~~~~~~~~~~~g~~~aiiDSGTt~~~lp~~~~~~l~~~i~~~~~~--~~~~~~~~~~~~c~~c~~ 309 (403)
T 3aup_A 232 VRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPK--QAQVKSVAPFGLCFNSNK 309 (403)
T ss_dssp ECEEEEEETTEEEECC------------CCEEECSSCSSEEECHHHHHHHHHHHHHTSCG--GGEECCCTTCSCEECGGG
T ss_pred EEEEEEEECCEEcccCChhHeeeccCCCCCEEEECCCccEEeCHHHHHHHHHHHHHHhcc--ccccCCCCCCCceEECCC
Confidence 9999999999887 5543221 2356999999999999999999999999 65532 122222223345765321
Q ss_pred CccccccccccceeEEEEEcccCceeeEEEEECCCccEEEeCCCceEEEEEcCCCCCCCCceEeChhhhccEEEEEECCC
Q 008104 474 PIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVN 553 (577)
Q Consensus 474 ~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~~l~p~~yl~~~~~g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~ 553 (577)
.+.+|.|+|+|+|+. ++.|+|++++|+++..++.+|++++.... ...+.||||+.|||++|+|||+++
T Consensus 310 --------~~~~P~i~f~f~g~~---~~~~~l~~~~y~~~~~~~~~C~~~~~~~~-~~~~~~ILG~~fl~~~yvvfD~~~ 377 (403)
T 3aup_A 310 --------INAYPSVDLVMDKPN---GPVWRISGEDLMVQAQPGVTCLGVMNGGM-QPRAEITLGARQLEENLVVFDLAR 377 (403)
T ss_dssp --------CCCCCCEEEEESSTT---CCEEEECHHHHEEEC---CEEECEEECCS-CCSSSEEECHHHHTTSCEEEETTT
T ss_pred --------cCcCCcEEEEEcCCC---ceEEEEcccceEEEcCCCeEEEEEEcCCC-CCCCcEEEChHHhcCeEEEEECCC
Confidence 125899999999830 15899999999998666779998877542 124689999999999999999999
Q ss_pred CEEEE-------EecCCCCCCCCc
Q 008104 554 KRIGW-------AKSHCMNPGRFK 570 (577)
Q Consensus 554 ~rIGf-------A~~~C~~~~~~~ 570 (577)
+|||| ++++|++..+.+
T Consensus 378 ~rIGf~A~~~~~~~~~C~~~~~~~ 401 (403)
T 3aup_A 378 SRVGFSTSSLHSHGVKCADLFNFA 401 (403)
T ss_dssp TEEEEESSCGGGGTCCGGGSCCTT
T ss_pred CEEEEecccccccCCCcccccccc
Confidence 99999 666777665543
No 14
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=100.00 E-value=1.4e-53 Score=446.63 Aligned_cols=311 Identities=20% Similarity=0.301 Sum_probs=257.5
Q ss_pred ceEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCC----CCCCCCCCCCCcCCCCCCccccCCCcchhh
Q 008104 187 SSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDA----PCSSCAKGANPLYKPRMGNILPYKDSLCME 262 (577)
Q Consensus 187 ~~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~----~C~~C~~~~~~~ydps~Sstv~c~~~~c~~ 262 (577)
++.+||... ++.|+++|.||||||++.|+|||||+++||++.. +|..| ..++.|+|++|+|
T Consensus 2 ~i~~~l~~~---~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C--~~~~~y~~~~SsT---------- 66 (339)
T 3fv3_A 2 SISLSLINE---GPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDC--KSSGTFTPSSSSS---------- 66 (339)
T ss_dssp CEEEEEEEC---SSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCT--TTTCCBCGGGCTT----------
T ss_pred ceeeEEEcC---CCEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCC--CCCCcCCCccCcc----------
Confidence 478888753 4689999999999999999999999999998430 44455 4688999999985
Q ss_pred hhcCCCCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCC
Q 008104 263 IQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAK 342 (577)
Q Consensus 263 ~~~~~~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~ 342 (577)
+... .|.|.+.|++|+.+.|.+++|+|+| |+.+++++.|||++... ..+||||||++.
T Consensus 67 ~~~~----------~~~~~i~Yg~gs~~~G~~~~D~v~~----g~~~v~~~~fg~~~~~~--------~~~GilGLg~~~ 124 (339)
T 3fv3_A 67 YKNL----------GAAFTIRYGDGSTSQGTWGKDTVTI----NGVSITGQQIADVTQTS--------VDQGILGIGYTS 124 (339)
T ss_dssp CEEE----------EEEEEEECTTSCEEEEEEEEEEEEE----TTEEEEEEEEEEEEEES--------SSSCEEECSCGG
T ss_pred eeeC----------CceEEEEECCCceEEEEEEEEEEEE----CCEEECceEEEEEEecC--------CCceeEEecCcc
Confidence 3322 5899999999999999999999999 89999999999998864 369999999965
Q ss_pred CC----------------ChHHHHhcCCc-cceEEEEeecCCCCCeeEEeC--CCCCCCCCceEEeCccCCCCcceEEEE
Q 008104 343 VS----------------LPSQLASQGII-KNVVGHCLTTNAGGGGYMFLG--HDLVPSWGMAWVPMLDSPFMELYHTEI 403 (577)
Q Consensus 343 ~S----------------~~~qL~~~g~i-~~~FSl~L~~~~~~~G~l~fG--d~~~~~g~l~~~pl~~~~~~~~w~V~l 403 (577)
.+ |+++|+++|+| +++||+||.+.....|.|+|| |..++.|+++|+|+... .+|.|.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~L~~~g~i~~~~fsl~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~v~l 201 (339)
T 3fv3_A 125 NEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAETGTIIFGGVDNAKYSGKLVAEQVTSS---QALTISL 201 (339)
T ss_dssp GCCCBCTTSCBCSCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEEBCCS---SSCEEEE
T ss_pred ccccccccccccCccCCcHHHHHHHCCCCCCceEEEEECCCCCCCeEEEEeeechHHeecceEEEecccC---ccEEEEE
Confidence 43 78999999999 899999999876679999999 56888999999999876 4999999
Q ss_pred eEEeeCCcceecCcccCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCcccccccc
Q 008104 404 LKINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVK 482 (577)
Q Consensus 404 ~~I~vgg~~l~i~~~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~ 482 (577)
++|.|+++.+.. ...+||||||++++||++++++|++++ +.+... ......+.++ |+..
T Consensus 202 ~~i~v~g~~~~~------~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~--~~~~~~~~~~-C~~~----------- 261 (339)
T 3fv3_A 202 ASVNLKGSSFSF------GDGALLDSGTTLTYFPSDFAAQLADKAGARLVQV--ARDQYLYFID-CNTD----------- 261 (339)
T ss_dssp EEEEESSCEEEE------EEEEEECTTBSSEEECHHHHHHHHHHHTCEEEEE--ETTEEEEEEC-TTCC-----------
T ss_pred EEEEECCEeecC------CccEEEeCCCCCEecCHHHHHHHHHHcCCEEccc--cccCceEEEe-cCCC-----------
Confidence 999999998764 267999999999999999999999999 654310 0001112233 7641
Q ss_pred ccceeEEEEEcccCceeeEEEEECCCccEEEeCCCceE-EEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEec
Q 008104 483 QFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNIC-LGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKS 561 (577)
Q Consensus 483 ~~~P~l~f~F~gg~~~~~~~~~l~p~~yl~~~~~g~~C-l~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~ 561 (577)
.+|.|+|+|+++ ++|+|++++|+++.. +..| +++.. .+.||||+.|||++|+|||++++|||||++
T Consensus 262 -~~p~i~f~f~~g-----~~~~v~~~~~~~~~~-~~~C~~~i~~------~~~~ilG~~fl~~~y~vfD~~~~~igfA~~ 328 (339)
T 3fv3_A 262 -TSGTTVFNFGNG-----AKITVPNTEYVYQNG-DGTCLWGIQP------SDDTILGDNFLRHAYLLYNLDANTISIAQV 328 (339)
T ss_dssp -CCSEEEEEETTS-----CEEEEEGGGGEEECS-SSCEEESEEE------CSSCEECHHHHTTEEEEEETTTTEEEEEEB
T ss_pred -CCCcEEEEECCC-----CEEEECHHHheeeCC-CCeEEEEEEe------CCcEEeChHHHhCEEEEEECCCCEEEEEec
Confidence 368999999865 899999999999753 4568 55555 246999999999999999999999999999
Q ss_pred CCCCCCCCc
Q 008104 562 HCMNPGRFK 570 (577)
Q Consensus 562 ~C~~~~~~~ 570 (577)
+|+..++..
T Consensus 329 ~~~~~s~i~ 337 (339)
T 3fv3_A 329 KYTTDSSIS 337 (339)
T ss_dssp CCCSCCCEE
T ss_pred CCCCccceE
Confidence 999766543
No 15
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=100.00 E-value=3.9e-54 Score=449.23 Aligned_cols=311 Identities=25% Similarity=0.433 Sum_probs=255.6
Q ss_pred eeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCC
Q 008104 190 FPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKP 269 (577)
Q Consensus 190 ~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~ 269 (577)
+||+ +.++.|+++|.||||||++.|+|||||+++||+|. .|..+.|..++.|||++|+| +...
T Consensus 5 ~~l~---~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~-~C~~~~C~~~~~y~~~~SsT----------~~~~--- 67 (329)
T 1htr_B 5 EPMA---YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSV-YCQSQACTSHSRFNPSESST----------YSTN--- 67 (329)
T ss_dssp CGGG---GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBT-TCCSHHHHTSCCBCGGGCTT----------CEEE---
T ss_pred eeeE---EcCCEEEEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCcccCCCCcCCCccCCC----------eEEC---
Confidence 5665 46789999999999999999999999999999998 89764456688999999985 2222
Q ss_pred CCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCC------
Q 008104 270 GYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV------ 343 (577)
Q Consensus 270 ~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~------ 343 (577)
.|.|++.|++| .+.|.+++|+|+| |+.+++++.|||++...+..+. ...++||||||++.+
T Consensus 68 -------~~~~~i~Yg~g-s~~G~~~~D~v~~----g~~~~~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~s~~~~~ 134 (329)
T 1htr_B 68 -------GQTFSLQYGSG-SLTGFFGYDTLTV----QSIQVPNQEFGLSENEPGTNFV-YAQFDGIMGLAYPALSVDEAT 134 (329)
T ss_dssp -------EEEEEEEETTE-EEEEEEEEEEEEE----TTEEEEEEEEEEESSCSSGGGG-GCSCCEEEECCCCSCCCTTCC
T ss_pred -------CcEEEEEeCCC-CeEEEEEeeeEEE----cceEECceEEEEEEEccccccc-cCCCceEEecCCCcccccCCC
Confidence 58999999999 5699999999999 8899999999999987665432 467899999999765
Q ss_pred CChHHHHhcCCc-cceEEEEeecCCCC-CeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCccc
Q 008104 344 SLPSQLASQGII-KNVVGHCLTTNAGG-GGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARN 419 (577)
Q Consensus 344 S~~~qL~~~g~i-~~~FSl~L~~~~~~-~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~ 419 (577)
+++++|+++|+| +++||+||.+.... +|.|+||+ ..++.|+++|+|+... .+|.|.|++|.|+++.+.. .
T Consensus 135 ~~~~~l~~qg~i~~~~Fs~~L~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~v~l~~i~v~~~~~~~---~ 208 (329)
T 1htr_B 135 TAMQGMVQEGALTSPVFSVYLSNQQGSSGGAVVFGGVDSSLYTGQIYWAPVTQE---LYWQIGIEEFLIGGQASGW---C 208 (329)
T ss_dssp SHHHHHHHTTCSSSSEEEEEECSSCSSEEEEEEESSCCGGGEEEEEEEEEBCSS---SSCEEEECEEEETTEECCT---T
T ss_pred CHHHHHHhcCCCCCCEEEEEEcCCCCCCCcEEEEcccCHHHcCCceEEEECCCC---ceEEEEEeEEEECCceeee---c
Confidence 478999999999 99999999986544 89999995 4677899999999865 5999999999999987542 1
Q ss_pred CCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCce
Q 008104 420 SQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQI 498 (577)
Q Consensus 420 ~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~ 498 (577)
.....+||||||++++||+++|++|++++ +..... ..+.++ |+.. +.+|+|+|+|+|
T Consensus 209 ~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~~~~------g~~~~~-C~~~-----------~~~P~i~f~f~g---- 266 (329)
T 1htr_B 209 SEGCQAIVDTGTSLLTVPQQYMSALLQATGAQEDEY------GQFLVN-CNSI-----------QNLPSLTFIING---- 266 (329)
T ss_dssp TTCEEEEECTTCCSEEEEGGGHHHHHHHHTCEECTT------SCEEEC-GGGG-----------GGSCCEEEEETT----
T ss_pred CCCceEEEecCCccEECCHHHHHHHHHHhCCeecCC------CeEEEe-CCCc-----------ccCCcEEEEECC----
Confidence 34578999999999999999999999999 543211 112234 8653 247999999976
Q ss_pred eeEEEEECCCccEEEeCCCceEEE-EEcCCCC-CCCC-ceEeChhhhccEEEEEECCCCEEEEEecC
Q 008104 499 VSTKFHISPEGYLVISKKGNICLG-ILDGSEV-HNGS-TIILGDISLRGQLVVYDNVNKRIGWAKSH 562 (577)
Q Consensus 499 ~~~~~~l~p~~yl~~~~~g~~Cl~-i~~~~~~-~~~~-~~ILG~~FLr~~yvVFD~~~~rIGfA~~~ 562 (577)
+.|+|++++|+++.. + .|+. +...... ..++ .||||+.|||++|+|||++++|||||+++
T Consensus 267 --~~~~i~~~~y~~~~~-g-~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~ 329 (329)
T 1htr_B 267 --VEFPLPPSSYILSNN-G-YCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 329 (329)
T ss_dssp --EEEEECHHHHEEECS-S-CEEESEEEECCCCTTSSCEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred --EEEEECHHHhcccCC-C-EEEEEEEECCCCCCCCCceEEEChHHhccEEEEEECCCCEEEEEeCC
Confidence 899999999999865 4 8974 5543211 1234 89999999999999999999999999874
No 16
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=100.00 E-value=1.8e-53 Score=446.21 Aligned_cols=314 Identities=21% Similarity=0.326 Sum_probs=255.6
Q ss_pred ceEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCC-CCCCC-------CCCCCCcCCCCCCccccCCCc
Q 008104 187 SSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDA-PCSSC-------AKGANPLYKPRMGNILPYKDS 258 (577)
Q Consensus 187 ~~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~-~C~~C-------~~~~~~~ydps~Sstv~c~~~ 258 (577)
.+.+|+.. .++.|+++|.||||||++.|+|||||+++||+|.. .|..| .|..++.|+|++|+|
T Consensus 2 ~v~~~l~~---~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT------ 72 (342)
T 3pvk_A 2 AVPVTLHN---EQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSA------ 72 (342)
T ss_dssp CEEEEEEE---CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGTTCCBCGGGCTT------
T ss_pred CcceEEec---CCcEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCCCCCcCCCccCcc------
Confidence 36677764 35699999999999999999999999999998651 15332 345688999999985
Q ss_pred chhhhhcCCCCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEec
Q 008104 259 LCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGL 338 (577)
Q Consensus 259 ~c~~~~~~~~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGL 338 (577)
+... .|.|.+.|++|+.+.|.+++|+|+| |+..++++.|||++... ..+|||||
T Consensus 73 ----~~~~----------~~~~~i~Yg~gs~~~G~~~~D~v~i----g~~~v~~~~fg~~~~~~--------~~~GilGL 126 (342)
T 3pvk_A 73 ----SQDL----------NTPFKIGYGDGSSSQGTLYKDTVGF----GGVSIKNQVLADVDSTS--------IDQGILGV 126 (342)
T ss_dssp ----CEEE----------EEEEEEECSSSCEEEEEEEEEEEEE----TTEEEEEEEEEEEEEES--------SSSCEEEC
T ss_pred ----eeec----------CCeEEEEecCCCeEEEEEEEEEEEE----CCEEecceEEEEEEccC--------CCccEEEe
Confidence 3222 5889999999988999999999999 88999999999998753 57999999
Q ss_pred CCCC-------CCChHHHHhcCCc-cceEEEEeecCCCCCeeEEeC--CCCCCCCCceEEeCccCCCCcceEEEEeEEee
Q 008104 339 SRAK-------VSLPSQLASQGII-KNVVGHCLTTNAGGGGYMFLG--HDLVPSWGMAWVPMLDSPFMELYHTEILKINY 408 (577)
Q Consensus 339 g~~~-------~S~~~qL~~~g~i-~~~FSl~L~~~~~~~G~l~fG--d~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~v 408 (577)
|++. .+++++|+++|+| +++||+||.+.....|.|+|| |..++.|++.|+|+... .+|.|.|++|.|
T Consensus 127 g~~~~~~~~~~~~~~~~L~~qg~i~~~~fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~v~l~~i~v 203 (342)
T 3pvk_A 127 GYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQIIFGGVDNAKYSGSLIALPVTSD---RELRISLGSVEV 203 (342)
T ss_dssp SCGGGCSSCSSCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEECCCS---SSCEEEEEEEEE
T ss_pred cCccccccccCCcHHHHHHhcCCCCCceEEEEeCCCCCCCcEEEECccCccceeeeeEEeecCcc---ceEEEEEeEEEE
Confidence 9976 4689999999999 899999999766678999999 56788999999999876 499999999999
Q ss_pred CCcceecCcccCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCcccccccccccee
Q 008104 409 GSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKT 487 (577)
Q Consensus 409 gg~~l~i~~~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~ 487 (577)
+++.+... ...+||||||++++||++++++|++++ +.+..... ....+.++ |+. .|.
T Consensus 204 ~g~~~~~~-----~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~~--~~~~~~~~-C~~--------------~p~ 261 (342)
T 3pvk_A 204 SGKTINTD-----NVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDSN--GNSFYEVD-CNL--------------SGD 261 (342)
T ss_dssp TTEEEEEE-----EEEEEECTTCSSEEECHHHHHHHHHHTTCEEEECTT--SCEEEEEC-SCC--------------CSE
T ss_pred CCEEecCC-----CceEEEeCCCCCeecCHHHHHHHHHHcCCeecccCC--CceEEEEe-cCC--------------CCc
Confidence 99987642 378999999999999999999999999 55431100 00012233 753 489
Q ss_pred EEEEEcccCceeeEEEEECCCccEEEe--CCC---ceEEEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecC
Q 008104 488 LTLHFGSKWQIVSTKFHISPEGYLVIS--KKG---NICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSH 562 (577)
Q Consensus 488 l~f~F~gg~~~~~~~~~l~p~~yl~~~--~~g---~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~ 562 (577)
|+|+|+++ ++++|++++|+++. .++ ..|+..+.. .+.||||+.|||++|+|||++++|||||+++
T Consensus 262 i~f~f~~g-----~~~~vp~~~~~~~~~~~~g~~~~~C~~~i~~-----~~~~ilG~~fl~~~y~vfD~~~~~igfA~~~ 331 (342)
T 3pvk_A 262 VVFNFSKN-----AKISVPASEFAASLQGDDGQPYDKCQLLFDV-----NDANILGDNFLRSAYIVYDLDDNEISLAQVK 331 (342)
T ss_dssp EEEEESTT-----CEEEEEGGGGEEC----------CEEESEEE-----CTTCEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred eEEEECCC-----CEEEEcHHHheeeccccCCCcCCeeEEEEee-----CCCeEeCHHHHhcEEEEEECCCCEEEEEecC
Confidence 99999965 88999999999863 123 689765543 2579999999999999999999999999999
Q ss_pred CCCCCCCc
Q 008104 563 CMNPGRFK 570 (577)
Q Consensus 563 C~~~~~~~ 570 (577)
|+..++..
T Consensus 332 ~~~~s~iv 339 (342)
T 3pvk_A 332 YTSASSIS 339 (342)
T ss_dssp CCSCCCEE
T ss_pred CCCCCCEE
Confidence 99665543
No 17
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=100.00 E-value=2.5e-53 Score=443.30 Aligned_cols=303 Identities=22% Similarity=0.343 Sum_probs=249.8
Q ss_pred CCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCCC
Q 008104 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQ 276 (577)
Q Consensus 197 ~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~ 276 (577)
+.++.|+++|.||||+|++.|+|||||+++||+|. +|..|.|..++.|||++|+| +.. .+
T Consensus 12 ~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~-~C~~~~~~~~~~y~~~~SsT----------~~~---------~~ 71 (329)
T 3c9x_A 12 SADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSS-ETPKSSATGHAIYTPSKSST----------SKK---------VS 71 (329)
T ss_dssp TTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBT-TSCHHHHTTSCCBCGGGCTT----------CEE---------CT
T ss_pred CCCCEEEEEEEECCCCeEEEEEEcCCCCCeEEecC-CCCccccCCCCcCCcccCcC----------ceE---------cC
Confidence 45779999999999999999999999999999998 99999998999999999985 221 01
Q ss_pred CceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCCC---------ChH
Q 008104 277 QCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVS---------LPS 347 (577)
Q Consensus 277 ~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~S---------~~~ 347 (577)
.|.|.+.|++|+.+.|.+++|+|+| |+.+++++.|||++..++.+.. ...++||||||+..++ +++
T Consensus 72 ~~~~~i~Yg~Gs~~~G~~~~D~v~i----g~~~v~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~s~~~~~~~~~~~~ 146 (329)
T 3c9x_A 72 GASWSISYGDGSSSSGDVYTDKVTI----GGFSVNTQGVESATRVSTEFVQ-DTVISGLVGLAFDSGNQVRPHPQKTWFS 146 (329)
T ss_dssp TCBEEEECTTSCEEEEEEEEEEEEE----TTEEEEEEEEEEEEEECHHHHH-CTTCCEEEECSCGGGCCCBSSCCCCHHH
T ss_pred CCeEEEEeCCCCcEEEEEEEEEEEE----CCEEEcceEEEEEEecCccccc-cCCCceeEEeCcccccccCCCCCCCHHH
Confidence 4889999999977999999999999 8899999999999987665542 3578999999996543 678
Q ss_pred HHHhcCCc-cceEEEEeecCCCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCcccCCCcc
Q 008104 348 QLASQGII-KNVVGHCLTTNAGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGW 424 (577)
Q Consensus 348 qL~~~g~i-~~~FSl~L~~~~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~~~~~~ 424 (577)
+|+++ | +++||+||.+ ..+|.|+||+ ..++.|+++|+|+.... .+|.|.|++|.|+++.+. .....
T Consensus 147 ~l~~~--i~~~~FS~~l~~--~~~G~l~fGg~d~~~~~g~l~~~p~~~~~--~~~~v~l~~i~v~~~~~~-----~~~~~ 215 (329)
T 3c9x_A 147 NAASS--LAEPLFTADLRH--GQNGSYNFGYIDTSVAKGPVAYTPVDNSQ--GFWEFTASGYSVGGGKLN-----RNSID 215 (329)
T ss_dssp HHHTT--SSSSEEEEECCS--SSCEEEEESSCCGGGCSSCEEEEECBCTT--SSCEEEECCEEETTCCCC-----SCCEE
T ss_pred HHHHh--cCCCEEEEEecC--CCCcEEEEeCcChhhcccceEEEEccCCC--ceEEEEEeeEEECCEecc-----CCCce
Confidence 99886 6 9999999986 4689999995 56789999999998544 699999999999998763 24578
Q ss_pred EEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCceeeEEE
Q 008104 425 ALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKF 503 (577)
Q Consensus 425 aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~ 503 (577)
+||||||++++||++++++|++++ .+.... ....+.++ |+. .+|.|+|+|+| ++|
T Consensus 216 aiiDSGTt~~~lp~~~~~~i~~~i~~a~~~~----~~~~~~~~-C~~-------------~~P~i~f~f~g------~~~ 271 (329)
T 3c9x_A 216 GIADTGTTLLLLDDNVVDAYYANVQSAQYDN----QQEGVVFD-CDE-------------DLPSFSFGVGS------STI 271 (329)
T ss_dssp EEECTTCCSEEECHHHHHHHHTTCTTCEEET----TTTEEEEE-TTC-------------CCCCEEEEETT------EEE
T ss_pred EEEECCCCcEeCCHHHHHHHHHhCCCcEEcC----CCCEEEEE-CCC-------------CCCcEEEEECC------EEE
Confidence 999999999999999999999888 432110 00111234 752 37999999986 899
Q ss_pred EECCCccEEEeCC--CceEEEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEec
Q 008104 504 HISPEGYLVISKK--GNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKS 561 (577)
Q Consensus 504 ~l~p~~yl~~~~~--g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~ 561 (577)
.|++++|++...+ ...|++.+...+ ..+.||||+.|||++|+|||++++|||||+.
T Consensus 272 ~ip~~~~~~~~~~~~~~~C~~~i~~~~--~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~ 329 (329)
T 3c9x_A 272 TIPGDLLNLTPLEEGSSTCFGGLQSSS--GIGINIFGDVALKAALVVFDLGNERLGWAQK 329 (329)
T ss_dssp EECGGGGEEEESSTTCSEEEESEEECT--TTTSEEECHHHHTTEEEEEETTTTEEEEEEC
T ss_pred EECHHHeeeeccCCCCCeEEEEEEcCC--CCCcEEEChHHhccEEEEEECCCCEEeEecC
Confidence 9999999987532 479987443321 3468999999999999999999999999973
No 18
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=100.00 E-value=9e-54 Score=448.33 Aligned_cols=316 Identities=22% Similarity=0.400 Sum_probs=260.4
Q ss_pred CCceEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCC--CCCCCCcCCCCCCccccCCCcchhh
Q 008104 185 DSSSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSC--AKGANPLYKPRMGNILPYKDSLCME 262 (577)
Q Consensus 185 ~~~~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C--~~~~~~~ydps~Sstv~c~~~~c~~ 262 (577)
.+.+.+||.. +.+..|+++|.||||||++.|+|||||+++||+|. .|..| .|..++.|+|++|+|
T Consensus 5 ~~~~~~~l~n--~~d~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~C~~~~~y~~~~SsT---------- 71 (341)
T 3k1w_A 5 NTTSSVILTN--YMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSS-KCSRLYTACVYHKLFDASDSSS---------- 71 (341)
T ss_dssp CBCEEEEEEE--ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBT-TSCTTCHHHHTSCCBCGGGCTT----------
T ss_pred CCCccccceE--ccCCEEEEEEEEcCCCcEEEEEEeCCCcceEEccC-CCCCCCCcccCCCCCCCCcCcC----------
Confidence 3567888874 45789999999999999999999999999999998 89732 345788999999985
Q ss_pred hhcCCCCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCC
Q 008104 263 IQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAK 342 (577)
Q Consensus 263 ~~~~~~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~ 342 (577)
+... .|.|.+.|++| .+.|.+++|+|+| |+..+ ++.|||++...+..+. ...++||||||++.
T Consensus 72 ~~~~----------~~~~~i~Yg~g-s~~G~~~~D~v~i----g~~~v-~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~ 134 (341)
T 3k1w_A 72 YKHN----------GTELTLRYSTG-TVSGFLSQDIITV----GGITV-TQMFGEVTEMPALPFM-LAEFDGVVGMGFIE 134 (341)
T ss_dssp CEEE----------EEEEEEEETTE-EEEEEEEEEEEEE----TTEEE-EEEEEEEEECCHHHHT-TCSSSEEEECSCGG
T ss_pred eeEC----------CCEEEEEECCc-EEEEEEEEEEEEE----CCcee-eEEEEEEEEccccccc-cCCcceEEECCchh
Confidence 2222 58999999999 5999999999999 88889 9999999988765222 46789999999976
Q ss_pred CC------ChHHHHhcCCc-cceEEEEeecCC----CCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeC
Q 008104 343 VS------LPSQLASQGII-KNVVGHCLTTNA----GGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYG 409 (577)
Q Consensus 343 ~S------~~~qL~~~g~i-~~~FSl~L~~~~----~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vg 409 (577)
.+ ++++|++||.| +++||+||.++. ..+|.|+||+ ..++.|+++|+|+... .+|.|.+++|.|+
T Consensus 135 ~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~w~v~l~~i~v~ 211 (341)
T 3k1w_A 135 QAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKT---GVWQIQMKGVSVG 211 (341)
T ss_dssp GCGGGCCCHHHHHHHHTCBSSSEEEEEECCCC-----CCEEEEESSCCGGGEEEEEEEEECSST---TSCEEEECCEEET
T ss_pred hcccCCCCHHHHHHHCCCCCCCEEEEEEeCCCCcCCCCCCEEEECccChHHccCceEEEecCCC---CEEEEEEeEEEEC
Confidence 54 79999999999 999999999764 3489999995 5778899999999865 6999999999999
Q ss_pred CcceecCcccCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeE
Q 008104 410 SSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTL 488 (577)
Q Consensus 410 g~~l~i~~~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l 488 (577)
++.+.. .....+||||||++++||++++++|++++ +.....+ +.++ |+.. ..+|+|
T Consensus 212 ~~~~~~----~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~~~g-------~~~~-C~~~-----------~~~p~i 268 (341)
T 3k1w_A 212 SSTLLC----EDGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFD-------YVVK-CNEG-----------PTLPDI 268 (341)
T ss_dssp TEEEEC----TTCEEEEECTTCSSEEECHHHHHHHHHHHTCEECSSC-------EEEE-GGGG-----------GGCCCE
T ss_pred CEEeec----CCCCEEEEECCCChhcCCHHHHHHHHHHcCCeecCCC-------eEEe-CCCC-----------CcCCcE
Confidence 987543 34578999999999999999999999999 5443111 3344 7643 247999
Q ss_pred EEEEcccCceeeEEEEECCCccEEEeC--CCceEEE-EEcCCC-CCCCCceEeChhhhccEEEEEECCCCEEEEEecC
Q 008104 489 TLHFGSKWQIVSTKFHISPEGYLVISK--KGNICLG-ILDGSE-VHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSH 562 (577)
Q Consensus 489 ~f~F~gg~~~~~~~~~l~p~~yl~~~~--~g~~Cl~-i~~~~~-~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~ 562 (577)
+|+|+| ++|+|++++|+++.. ++..|+. +..... ...++.||||++|||++|+|||++++|||||+++
T Consensus 269 ~f~f~g------~~~~l~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a~ 340 (341)
T 3k1w_A 269 SFHLGG------KEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 340 (341)
T ss_dssp EEEETT------EEEEECHHHHBCCSCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEECC------EEEEECHHHheeEccCCCCCeEEeEEEecccCCCCCCeEEEChHHhcceEEEEeCCCCEEEEEECC
Confidence 999997 899999999998753 3679975 444211 1235689999999999999999999999999986
No 19
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=100.00 E-value=4.2e-53 Score=441.60 Aligned_cols=301 Identities=21% Similarity=0.317 Sum_probs=247.2
Q ss_pred CCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCCCC
Q 008104 198 PDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQ 277 (577)
Q Consensus 198 ~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~~ 277 (577)
.++.|+++|.||||+|++.|+|||||+++||+|. +|..|.| .++.|||++|+| +.. .+.
T Consensus 13 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~-~C~~~~~-~~~~y~~~~SsT----------~~~---------~~~ 71 (329)
T 1oew_A 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSS-ETTASEV-XQTIYTPSKSTT----------AKL---------LSG 71 (329)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEETTCCCEEECBT-TSCGGGC--CCCBCGGGCTT----------CEE---------EEE
T ss_pred CCCEEEEEEEECCCCeEEEEEECCCCCCeEEecC-CCCcccc-ccCccCCccCcc----------cee---------cCC
Confidence 5679999999999999999999999999999998 9999998 889999999985 221 014
Q ss_pred ceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCCC---------ChHH
Q 008104 278 CDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVS---------LPSQ 348 (577)
Q Consensus 278 ~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~S---------~~~q 348 (577)
|.|.+.|++|+.+.|.+++|+|+| |+..++++.|||++..++.+.. ...++||||||+..++ ++++
T Consensus 72 ~~~~i~Yg~Gs~~~G~~~~D~v~~----g~~~v~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~s~~~~~~~~~~~~~ 146 (329)
T 1oew_A 72 ATWSISYGDGSSSSGDVYTDTVSV----GGLTVTGQAVESAKKVSSSFTE-DSTIDGLLGLAFSTLNTVSPTQQKTFFDN 146 (329)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEE----TTEEEEEEEEEEEEEECHHHHH-CTTCCEEEECSCGGGCCCBSSCCCCHHHH
T ss_pred CeEEEEeCCCCcEEEEEEEEEEEE----CCEEEeeeEEEEEEecCccccc-cCCCceEEEeccccccccCcCCCCCHHHH
Confidence 889999999977999999999999 8899999999999987765542 3578999999996543 6789
Q ss_pred HHhcCCc-cceEEEEeecCCCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCcccCCCccE
Q 008104 349 LASQGII-KNVVGHCLTTNAGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWA 425 (577)
Q Consensus 349 L~~~g~i-~~~FSl~L~~~~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~~~~~~a 425 (577)
|+++ | +++||+||.+ ..+|.|+||+ ..++.|+++|+|+.... .+|.|.|++|.|+++.+. .....+
T Consensus 147 l~~~--i~~~~FS~~L~~--~~~G~l~fGg~d~~~~~g~l~~~p~~~~~--~~~~v~l~~i~v~~~~~~-----~~~~~a 215 (329)
T 1oew_A 147 AKAS--LDSPVFTADLGY--HAPGTYNFGFIDTTAYTGSITYTAVSTKQ--GFWEWTSTGYAVGSGTFK-----STSIDG 215 (329)
T ss_dssp HTTT--SSSSEEEEECCS--SSCEEEEESCCCTTSSSSCCEEEECBCTT--SSCEEEEEEEEETTSCCE-----EEEEEE
T ss_pred HHHh--ccCcEEEEEccC--CCCeEEEEeccChHhcccceEEEEccCCC--ceEEEEEeeEEECCeecc-----CCCceE
Confidence 9887 6 9999999986 4689999995 56789999999998554 699999999999998764 234789
Q ss_pred EEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCceeeEEEE
Q 008104 426 LFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFH 504 (577)
Q Consensus 426 IiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~~ 504 (577)
||||||++++||++++++|++++ .+.... ....+.++ |+. .+|+|+|+|+| ++|+
T Consensus 216 iiDSGTt~~~lP~~~~~~l~~~i~~a~~~~----~~g~~~~~-C~~-------------~~P~i~f~fgg------~~~~ 271 (329)
T 1oew_A 216 IADTGTTLLYLPATVVSAYWAQVSGAKSSS----SVGGYVFP-CSA-------------TLPSFTFGVGS------ARIV 271 (329)
T ss_dssp EECTTCCSEEECHHHHHHHHTTSTTCEEET----TTTEEEEE-TTC-------------CCCCEEEEETT------EEEE
T ss_pred EEeCCCCCEECCHHHHHHHHHhCCCcEEcC----CCCEEEEE-CCC-------------CCCcEEEEECC------EEEE
Confidence 99999999999999999999988 432110 00111234 752 37999999965 8999
Q ss_pred ECCCccEEEeC--CCceEEEEEcCCCCCCCCceEeChhhhccEEEEEEC-CCCEEEEEec
Q 008104 505 ISPEGYLVISK--KGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDN-VNKRIGWAKS 561 (577)
Q Consensus 505 l~p~~yl~~~~--~g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~-~~~rIGfA~~ 561 (577)
|++++|++... +...|++.+...+ ..+.||||+.|||++|+|||+ +++|||||+.
T Consensus 272 ip~~~~~~~~~~~~~~~C~~~i~~~~--~~~~~iLG~~fl~~~y~vfD~~~~~riGfA~~ 329 (329)
T 1oew_A 272 IPGDYIDFGPISTGSSSCFGGIQSSA--GIGINIFGDVALKAAFVVFNGATTPTLGFASK 329 (329)
T ss_dssp ECHHHHEEEESSTTCSEEEESEEEST--TTSSEEECHHHHTTEEEEEECSSSCEEEEEEC
T ss_pred ECHHHeeeeecCCCCCeEEEEEEeCC--CCCceEEChHHhcCEEEEEECCCCceEEEecC
Confidence 99999998752 2479987544321 356899999999999999999 9999999974
No 20
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=100.00 E-value=1.1e-52 Score=446.98 Aligned_cols=345 Identities=19% Similarity=0.310 Sum_probs=262.4
Q ss_pred ceEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcC
Q 008104 187 SSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRN 266 (577)
Q Consensus 187 ~~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~ 266 (577)
.+.+||.. .+.+++|+++|.|||| |+|||||++|||+|. +|. ..+.++|.+..|......
T Consensus 2 ~~~~pv~~-~~~~~~Y~~~i~iGtP-----v~~DTGSs~lWv~c~-~~~-------------~~~~~~C~s~~C~~~~~~ 61 (381)
T 1t6e_X 2 PVLAPVTK-DPATSLYTIPFHDGAS-----LVLDVAGPLVWSTCD-GGQ-------------PPAEIPCSSPTCLLANAY 61 (381)
T ss_dssp CEEEEEEE-CTTTCCEEEEEETTEE-----EEEETTCCCEEECCC-TTC-------------CCCCCBTTSHHHHHHHSS
T ss_pred ceEEeEEe-cCCCcEEEEEEeCCCE-----EEEECCCCceEEeCC-CCC-------------CCCccCCCCchhccccCC
Confidence 35678874 3568899999999998 999999999999987 441 123478988889865443
Q ss_pred CCCCCCCC--------CCCc-eeEEEeCCCCeEEEEEEEEEEEEeecCCCccccce----EEEEEEccCccccccCCccc
Q 008104 267 HKPGYCET--------CQQC-DYEIEYADHSSSMGVLARDELHLTIENGSLTKPNV----VFGCAYDQQGLLLNTLVKTD 333 (577)
Q Consensus 267 ~~~~~c~~--------~~~~-~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~----~FG~a~~~~g~~~~~~~~~d 333 (577)
....|+. ++.| .|.+.|++|+.+.|.+++|+|+|+..+|+..++++ .|||+..+..... ...+|
T Consensus 62 -~~~sc~~~~~~~~~~~~~c~~f~i~YgdGs~~~G~l~~Dtv~ig~~~g~~~v~~~~~~~~Fg~~~~~~~~~~--~~~~d 138 (381)
T 1t6e_X 62 -PAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASL--PRGST 138 (381)
T ss_dssp -CCTTCCCCCC------CBCEECCBCTTTCCBCCEEEEEEEEEEEEESSSSEEEEEEEEEEEEECCGGGGTTS--CTTEE
T ss_pred -CCCCCCCccCCcCcCCCccccccccccCCceeeEEEEEEEEEeeccCCCccccceeeeeEeecCcccccCCC--CCCCc
Confidence 2235653 2356 59999999977899999999999765555666665 5699987632211 35789
Q ss_pred eEEecCCCCCCChHHHHhcCCccceEEEEeecCCCCCeeEEeCCCCC----CCCCceEEeCccCCCCcceEEEEeEEeeC
Q 008104 334 GILGLSRAKVSLPSQLASQGIIKNVVGHCLTTNAGGGGYMFLGHDLV----PSWGMAWVPMLDSPFMELYHTEILKINYG 409 (577)
Q Consensus 334 GIlGLg~~~~S~~~qL~~~g~i~~~FSl~L~~~~~~~G~l~fGd~~~----~~g~l~~~pl~~~~~~~~w~V~l~~I~vg 409 (577)
||||||++.+|++.||.++++++++||+||.+. .+|+|+||+... +.++++|+|++..+...+|.|.|++|+||
T Consensus 139 GIlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~--~~G~l~fGg~~~~~~~~~g~l~~tPl~~~~~~~~y~v~l~~i~vg 216 (381)
T 1t6e_X 139 GVAGLANSGLALPAQVASAQKVANRFLLCLPTG--GPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVG 216 (381)
T ss_dssp EEEECSSSTTSHHHHHHHHHTCCSEEEEECCSS--SCEEEEESCCSCSCHHHHTTCCEEECBCCTTCCSCEECEEEEEET
T ss_pred eEEEeCCCcchhHHHHhhhcccCceEEEEeCCC--CCeeEEeCCcccccccccCcceeeccccCCCCcceEEEEEEEEEc
Confidence 999999999999999999986699999999964 789999997432 57999999998763224677999999999
Q ss_pred CcceecCcccCCCccEEEecccccccccHHHHHHHHHHH-HhhcC-----CCceec-CCCCCCccccccCCCcccccccc
Q 008104 410 SSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSS-----DGLVLD-ASDPTLPVCWRAKFPIRSIVDVK 482 (577)
Q Consensus 410 g~~l~i~~~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~-----~~~~~~-~~~~~~~~C~~~~~~~~~~~~~~ 482 (577)
++.+.++........+||||||++++||+++|++|.+++ +++.. ..+.+. .....+..|+..+..... ...
T Consensus 217 ~~~~~~~~~~~~~~~~iiDTGTtl~~lp~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~C~~~~~~~~~--~~~ 294 (381)
T 1t6e_X 217 DTRVPVPEGALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNN--LGG 294 (381)
T ss_dssp TEECCCCTTCSCTTCEEECSSCSSEEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCEE--TTE
T ss_pred CEEecCCHHHccCCCEEEECCCccEEeCHHHHHHHHHHHHHhhcccccccccccccCCCCCCCCccCCCCCCccc--ccC
Confidence 998876543222467999999999999999999999999 66531 112121 222334569865421110 012
Q ss_pred ccceeEEEEEcccCceeeEEEEECCCccEEEeCCCceEEEEEcCCCC----CCCCceEeChhhhccEEEEEECCCCEEEE
Q 008104 483 QFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEV----HNGSTIILGDISLRGQLVVYDNVNKRIGW 558 (577)
Q Consensus 483 ~~~P~l~f~F~gg~~~~~~~~~l~p~~yl~~~~~g~~Cl~i~~~~~~----~~~~~~ILG~~FLr~~yvVFD~~~~rIGf 558 (577)
..+|+|+|+|+|+ +.|+|++++|+++..++.+|++++..... ...+.||||+.|||++|+|||++++||||
T Consensus 295 ~~~P~i~f~f~gg-----~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~~~~~ILGd~fl~~~yvvfD~~~~riGf 369 (381)
T 1t6e_X 295 YAVPNVQLGLDGG-----SDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGF 369 (381)
T ss_dssp ECCCCEEEEETTS-----CEEEECHHHHEEEEETTEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEE
T ss_pred CcCCeEEEEECCC-----cEEEeCCCeEEEEcCCCeEEEEEEcCCCcccccCCCceEEEChHHhCCcEEEEECCCCEEEE
Confidence 3589999999976 89999999999986667899988775421 12357999999999999999999999999
Q ss_pred EecCC
Q 008104 559 AKSHC 563 (577)
Q Consensus 559 A~~~C 563 (577)
|++..
T Consensus 370 A~~~~ 374 (381)
T 1t6e_X 370 SRLPH 374 (381)
T ss_dssp EECCT
T ss_pred ecccC
Confidence 99875
No 21
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=100.00 E-value=6e-53 Score=456.65 Aligned_cols=309 Identities=19% Similarity=0.317 Sum_probs=254.9
Q ss_pred ceEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcC
Q 008104 187 SSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRN 266 (577)
Q Consensus 187 ~~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~ 266 (577)
...+||.. +.++.|+++|.||||||++.|+|||||+++||+|. .|..+.|..++.|||++|+| +...
T Consensus 127 ~~~~~L~n--~~~~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~-~C~~~~C~~~~~ydps~SsT----------~~~~ 193 (453)
T 2bju_A 127 NDNIELVD--FQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSV-KCTTAGCLTKHLYDSSKSRT----------YEKD 193 (453)
T ss_dssp SEEEEEEE--ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBT-TCCSTTGGGSCCBCGGGCTT----------CEEE
T ss_pred CCceeeEe--cCCCEEEEEEEECCCCeEEEEEEECCCcceEEecc-CCCccccCCCCcCCCccCCc----------eeEC
Confidence 35677763 46789999999999999999999999999999999 99877777889999999985 2222
Q ss_pred CCCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccC--ccccccCCccceEEecCCCCC-
Q 008104 267 HKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQ--GLLLNTLVKTDGILGLSRAKV- 343 (577)
Q Consensus 267 ~~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~--g~~~~~~~~~dGIlGLg~~~~- 343 (577)
+|.|.+.|++| .+.|.+++|+|+| |+.+++ +.|||++... +..+. ...++||||||++.+
T Consensus 194 ----------~~~~~i~YgdG-s~~G~~~~Dtv~i----g~~~v~-~~Fg~a~~~~~~g~~f~-~~~~dGIlGLg~~~~s 256 (453)
T 2bju_A 194 ----------GTKVEMNYVSG-TVSGFFSKDLVTV----GNLSLP-YKFIEVIDTNGFEPTYT-ASTFDGILGLGWKDLS 256 (453)
T ss_dssp ----------EEEEEEECSSS-EEEEEEEEEEEEE----TTEEEE-EEEEEEEECGGGTTHHH-HSSCCEEEECSCGGGS
T ss_pred ----------CcEEEEEcCCC-CeEEEEEEEEEEE----eCcEEE-EEEEEEEEecccCcccc-ccCCceeEeccCCccc
Confidence 58999999999 5999999999999 888899 9999999876 54332 357899999999654
Q ss_pred -----CChHHHHhcCCc-cceEEEEeecCCCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceec
Q 008104 344 -----SLPSQLASQGII-KNVVGHCLTTNAGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNL 415 (577)
Q Consensus 344 -----S~~~qL~~~g~i-~~~FSl~L~~~~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i 415 (577)
+++++|+++|.| .++||+||.+....+|.|+||+ ..++.|+++|+|+... .+|.|.++ |.|++ .+ +
T Consensus 257 ~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~G~l~~~pv~~~---~~w~V~l~-I~Vgg-~~-~ 330 (453)
T 2bju_A 257 IGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHD---LYWQITLD-AHVGN-IM-L 330 (453)
T ss_dssp TTCCCCHHHHHHHTTSSSSCEEEEECCBTTTBCEEEEESSCCGGGEEEEEEEEEEEEE---TTEEEEEE-EEETT-EE-E
T ss_pred ccCCCcHHHHHHHCCCCCCCEEEEEeCCCCCCCeEEEECCCCHHHcCCceEEEecCCC---ceEEEEEE-EEECc-EE-e
Confidence 478999999999 8999999998656789999995 4678899999999865 59999999 99999 33 1
Q ss_pred CcccCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcc
Q 008104 416 GARNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGS 494 (577)
Q Consensus 416 ~~~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~g 494 (577)
....+||||||+++++|++++++|++++ +.....+ ..+.++ |+. ..+|+|+|+|+|
T Consensus 331 -----~~~~aIiDSGTsl~~lP~~~~~~l~~~i~~~~~~~g-----~~~~v~-C~~------------~~~P~itf~fgg 387 (453)
T 2bju_A 331 -----EKANCIVDSGTSAITVPTDFLNKMLQNLDVIKVPFL-----PFYVTL-CNN------------SKLPTFEFTSEN 387 (453)
T ss_dssp -----EEEEEEECTTCCSEEECHHHHHHHTTTSSCEECTTS-----SCEEEE-TTC------------TTCCCEEEECSS
T ss_pred -----ccccEEEcCCCCeEecCHHHHHHHHHHhCCcccCCC-----ceEEEe-cCC------------CCCCcEEEEECC
Confidence 3578999999999999999999999988 4321111 012233 764 237999999976
Q ss_pred cCceeeEEEEECCCccEEEeC--CCceEE-EEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecC
Q 008104 495 KWQIVSTKFHISPEGYLVISK--KGNICL-GILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSH 562 (577)
Q Consensus 495 g~~~~~~~~~l~p~~yl~~~~--~g~~Cl-~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~ 562 (577)
+.|+|++++|+++.. ++..|+ ++.... . ..+.||||++|||++|+|||++++|||||+++
T Consensus 388 ------~~~~l~~~~yi~~~~~~g~~~C~~~~~~~~-~-~~~~~ILGd~Flr~~yvVFD~~n~rIGfA~~~ 450 (453)
T 2bju_A 388 ------GKYTLEPEYYLQHIEDVGPGLCMLNIIGLD-F-PVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 450 (453)
T ss_dssp ------CEEEECHHHHEEECTTTSTTEEEECEEECC-C-SSCEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred ------EEEEECHHHhEeecccCCCceEEEEEEeCC-C-CCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 899999999999864 346997 455433 1 13589999999999999999999999999985
No 22
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=100.00 E-value=5.5e-53 Score=448.30 Aligned_cols=307 Identities=20% Similarity=0.354 Sum_probs=255.0
Q ss_pred ceEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcC
Q 008104 187 SSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRN 266 (577)
Q Consensus 187 ~~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~ 266 (577)
...+||.. +.++.|+++|.||||||++.|+|||||+++||+|. .|..+.|..++.|||++|+| +...
T Consensus 51 ~~~~pl~~--~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~-~C~~~~C~~~~~y~~~~SsT----------~~~~ 117 (375)
T 1miq_A 51 NDVIELDD--VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK-KCNSSGCSIKNLYDSSKSKS----------YEKD 117 (375)
T ss_dssp TBCCCGGG--TBCEEEECCCEETTTTEECCEEEETTCCCEEEEBT-TCCSSGGGGSCCBCGGGCTT----------CEEE
T ss_pred cceEEccc--CCCCEEEEEEEECCCCeEEEEEEeCCCcceEEccC-CCCcccccCCCcCCCccCCc----------eEEC
Confidence 34567763 46789999999999999999999999999999998 89866667789999999984 2222
Q ss_pred CCCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEc----cCccccccCCccceEEecCCCC
Q 008104 267 HKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYD----QQGLLLNTLVKTDGILGLSRAK 342 (577)
Q Consensus 267 ~~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~----~~g~~~~~~~~~dGIlGLg~~~ 342 (577)
+|.|.+.|++| .+.|.+++|+|+| |++.+++ .|||++. ++ .|. ...++||||||++.
T Consensus 118 ----------~~~~~i~Yg~G-s~~G~~~~Dtv~i----g~~~v~~-~Fg~~~~~~~~~~-~f~--~~~~dGilGLg~~~ 178 (375)
T 1miq_A 118 ----------GTKVDITYGSG-TVKGFFSKDLVTL----GHLSMPY-KFIEVTDTDDLEP-IYS--SVEFDGILGLGWKD 178 (375)
T ss_dssp ----------EEEEEEEETTE-EEEEEEEEEEEEE----TTEEEEE-EEEEEEECGGGTT-HHH--HSCCCEEEECSSCC
T ss_pred ----------CcEEEEEeCCC-eEEEEEEEEEEEE----cCceECc-EEEEEEecccccc-ccc--cCCCceEEeCCCCc
Confidence 58999999999 5899999999999 8889999 9999998 54 332 36789999999976
Q ss_pred C------CChHHHHhcCCc-cceEEEEeecCCCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcce
Q 008104 343 V------SLPSQLASQGII-KNVVGHCLTTNAGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPL 413 (577)
Q Consensus 343 ~------S~~~qL~~~g~i-~~~FSl~L~~~~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l 413 (577)
+ +++++|+++|+| .++||+||.+....+|.|+||+ ..++.|++.|+|+... .+|.|.++ |.|+++.+
T Consensus 179 ~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~w~v~l~-i~v~g~~~ 254 (375)
T 1miq_A 179 LSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHD---LYWQIDLD-VHFGKQTM 254 (375)
T ss_dssp TTCSSCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEEBSSS---SSSEEEEE-EEETTEEE
T ss_pred ccccCCCCHHHHHHhccCcCCCEEEEEecCCCCCCeEEEEcccCHHHcCCceEEEecCCC---ceEEEEEE-EEECCEEc
Confidence 5 478999999999 9999999998655789999995 4678899999999865 69999999 99999876
Q ss_pred ecCcccCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEE
Q 008104 414 NLGARNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHF 492 (577)
Q Consensus 414 ~i~~~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F 492 (577)
....+||||||++++||+++|++|++++ +.+.. ....+.++ |+. ..+|+|+|+|
T Consensus 255 -------~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~-----~~g~~~~~-C~~------------~~~P~i~f~f 309 (375)
T 1miq_A 255 -------EKANVIVDSGTTTITAPSEFLNKFFANLNVIKVP-----FLPFYVTT-CDN------------KEMPTLEFKS 309 (375)
T ss_dssp -------EEEEEEECTTBSSEEECHHHHHHHHHHHTCEECT-----TSSCEEEE-TTC------------TTCCCEEEEC
T ss_pred -------ccceEEecCCCccEEcCHHHHHHHHHHhCCcccC-----CCCeEEEE-CCC------------CCCCcEEEEE
Confidence 2478999999999999999999999999 54321 01112233 764 2379999999
Q ss_pred cccCceeeEEEEECCCccEEEeC--CCceEE-EEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecC
Q 008104 493 GSKWQIVSTKFHISPEGYLVISK--KGNICL-GILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSH 562 (577)
Q Consensus 493 ~gg~~~~~~~~~l~p~~yl~~~~--~g~~Cl-~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~ 562 (577)
+| +.|+|++++|+++.. +...|+ ++..... ..+.||||++|||++|+|||++++|||||+++
T Consensus 310 ~g------~~~~l~~~~yi~~~~~~g~~~C~~~~~~~~~--~~~~~ILG~~fl~~~yvvfD~~~~riGfA~~~ 374 (375)
T 1miq_A 310 AN------NTYTLEPEYYMNPILEVDDTLCMITMLPVDI--DSNTFILGDPFMRKYFTVFDYDKESVGFAIAK 374 (375)
T ss_dssp SS------CEEEECGGGSEEESSSSSCSEEEESEEECCS--SSSEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred CC------EEEEECHHHhEeeccCCCCCeEEEEEEECCC--CCCcEEECHHHhccEEEEEECCCCEEEEEEcC
Confidence 76 899999999999864 346897 5655431 13689999999999999999999999999874
No 23
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=100.00 E-value=3.1e-52 Score=434.32 Aligned_cols=299 Identities=22% Similarity=0.303 Sum_probs=247.8
Q ss_pred CCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCCCC
Q 008104 198 PDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQ 277 (577)
Q Consensus 198 ~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~~ 277 (577)
.++.|+++|.|| +|++.|+|||||+++||+|. +|..|.|..++.|+|++|+. .. +.
T Consensus 12 ~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~-~C~~~~c~~~~~y~~~~Ss~-----------~~----------~~ 67 (325)
T 1ibq_A 12 NDEEYLTPVTVG--KSTLHLDFDTGSADLWVFSD-ELPSSEQTGHDLYTPSSSAT-----------KL----------SG 67 (325)
T ss_dssp TTSCEEEEEEEB--TEEEEEEEETTCCCEEEECT-TSCHHHHTTSCCCBCCSSCE-----------EC----------TT
T ss_pred CCCEEEEEEEEC--CEEEEEEEeCCCccceEeeC-CCCccccCCCCCCCchhcCC-----------cc----------CC
Confidence 467999999999 89999999999999999999 99999988999999998861 11 25
Q ss_pred ceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCCC---------ChHH
Q 008104 278 CDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVS---------LPSQ 348 (577)
Q Consensus 278 ~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~S---------~~~q 348 (577)
|.|++.|++|+.+.|.+++|+|+| |+.+++++.|||++..++.+.. ...++||||||++.++ ++++
T Consensus 68 ~~~~i~Yg~Gs~~~G~~~~D~v~i----g~~~v~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~s~~~p~~~~~~~~~ 142 (325)
T 1ibq_A 68 YSWDISYGDGSSASGDVYRDTVTV----GGVTTNKQAVEAASKISSEFVQ-DTANDGLLGLAFSSINTVQPKAQTTFFDT 142 (325)
T ss_dssp CBEEEECSSSCEEEEEEEEEEEEE----TTEEEEEEEEEEEEEECHHHHT-STTCCEEEECSCGGGCCCBSSCCCCHHHH
T ss_pred CEEEEEeCCCCEEEEEEEEeEEEE----CCEEEcceEEEEEEecCccccc-cCCCceEEEeCcccccccCcCCCCCHHHH
Confidence 889999999977999999999999 8899999999999987765542 3578999999997644 5789
Q ss_pred HHhcCCc-cceEEEEeecCCCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCcccCCCccE
Q 008104 349 LASQGII-KNVVGHCLTTNAGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWA 425 (577)
Q Consensus 349 L~~~g~i-~~~FSl~L~~~~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~~~~~~a 425 (577)
|+++ + +++||+||.+ ..+|.|+||+ ..++.|+++|+|+.... .+|.|.|++|.|+++.+. .....+
T Consensus 143 l~~~--i~~~~FS~~l~~--~~~G~l~fGg~d~~~~~g~l~~~p~~~~~--~~w~v~l~~i~v~~~~~~-----~~~~~a 211 (325)
T 1ibq_A 143 VKSQ--LDSPLFAVQLKH--DAPGVYDFGYIDDSKYTGSITYTDADSSQ--GYWGFSTDGYSIGDGSSS-----SSGFSA 211 (325)
T ss_dssp HGGG--SSSSEEEEEEET--TEEEEEEESSCCGGGBSSCCEEEECBCTT--SSCEEEECEEEETTSCCB-----SCCEEE
T ss_pred HHHh--cCCcEEEEEecC--CCCceEEECCcChhhccCceEEEEcCCCC--ceEEEEECcEEECCeecc-----CCCceE
Confidence 9987 6 9999999996 3689999995 56789999999998544 699999999999998763 245789
Q ss_pred EEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCceeeEEEE
Q 008104 426 LFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFH 504 (577)
Q Consensus 426 IiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~~ 504 (577)
||||||++++||++++++|++++ .+... .....+.++ |+. .+|+|+|+|+| +.|+
T Consensus 212 iiDSGTt~~~lP~~~~~~i~~~i~~a~~~----~~~g~~~~~-C~~-------------~~P~i~f~fgg------~~~~ 267 (325)
T 1ibq_A 212 IADTGTTLILLDDEIVSAYYEQVSGAQES----YEAGGYVFS-CST-------------DLPDFTVVIGD------YKAV 267 (325)
T ss_dssp EECTTCCSEEECHHHHHHHHTTSTTCBCC----SSSSSCEEE-TTC-------------CCCCEEEEETT------EEEE
T ss_pred EEeCCCCcEeCCHHHHHHHHHhCCCceEc----CcCCeEEEE-cCC-------------CCCcEEEEECC------EEEE
Confidence 99999999999999999999998 43211 011122344 752 37999999966 8999
Q ss_pred ECCCccEEEeC--CCceEEEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecC
Q 008104 505 ISPEGYLVISK--KGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSH 562 (577)
Q Consensus 505 l~p~~yl~~~~--~g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~ 562 (577)
|++++|++... +...|++.+...+ ..+.||||++|||++|+|||++++|||||++.
T Consensus 268 i~~~~~~~~~~~~~~~~C~~~i~~~~--~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 325 (325)
T 1ibq_A 268 VPGKYINYAPVSTGSSTCYGGIQSNS--GLGLSILGDVFLKSQYVVFNSEGPKLGFAAQA 325 (325)
T ss_dssp ECHHHHEEEESSTTCSEEEESEEECT--TTCSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred ECHHHhcccccCCCCCeEEEEEEcCC--CCCceEEChHHhcCEEEEEECCCCEEEeeeCC
Confidence 99999998753 3379987443321 34689999999999999999999999999863
No 24
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=100.00 E-value=2.2e-52 Score=435.17 Aligned_cols=297 Identities=19% Similarity=0.273 Sum_probs=246.1
Q ss_pred CCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCCCC
Q 008104 198 PDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQ 277 (577)
Q Consensus 198 ~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~~ 277 (577)
.++.|+++|.|| ||++.|+|||||+++||+|. +|..|.|..++.|+|++|+. .. +.
T Consensus 13 ~~~~Y~~~i~iG--~q~~~v~~DTGSs~lWv~~~-~C~~~~c~~~~~y~~~~Ss~-----------~~----------~~ 68 (323)
T 1izd_A 13 NDEEYITQVTVG--DDTLGLDFDTGSADLWVFSS-QTPSSERSGHDYYTPGSSAQ-----------KI----------DG 68 (323)
T ss_dssp GGCCEEEEEEET--TEEEEEEEETTCCCEEECBT-TSCHHHHTTCCCBCCCTTCE-----------EE----------EE
T ss_pred CCCEEEEEEEEC--CEEEEEEEcCCCcceEEecC-CCCcccccCCCCCCccccCC-----------cc----------CC
Confidence 356899999999 89999999999999999999 99999988999999998861 11 15
Q ss_pred ceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCCC---------ChHH
Q 008104 278 CDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVS---------LPSQ 348 (577)
Q Consensus 278 ~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~S---------~~~q 348 (577)
|.|.+.|++|+.+.|.+++|+|+| |+++++++.|||++..++.+.. ...++||||||++.++ ++++
T Consensus 69 ~~~~i~Yg~Gs~~~G~~~~D~v~i----g~~~v~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~s~~~p~~~~~~~~~ 143 (323)
T 1izd_A 69 ATWSISYGDGSSASGDVYKDKVTV----GGVSYDSQAVESAEKVSSEFTQ-DTANDGLLGLAFSSINTVQPTPQKTFFDN 143 (323)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEE----TTEEEEEEEEEEEEEECHHHHH-CTTCCEEEECSCGGGCCCBSSCCCCHHHH
T ss_pred CeEEEEcCCCCeEEEEEEEEEEEE----CCEEECceEEEEEEeccccccc-cCCCceEEecCcccccccCCCCCCCHHHH
Confidence 899999999977999999999999 8899999999999987765542 3578999999997544 5789
Q ss_pred HHhcCCc-cceEEEEeecCCCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCcccCCCccE
Q 008104 349 LASQGII-KNVVGHCLTTNAGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWA 425 (577)
Q Consensus 349 L~~~g~i-~~~FSl~L~~~~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~~~~~~a 425 (577)
|+++ + +++||+||.+ ..+|.|+||+ ..++.|+++|+|+.... .+|.|.+++|.|++ .+. .....+
T Consensus 144 l~~~--i~~~~FS~~L~~--~~~G~l~fGg~d~~~~~g~l~~~p~~~~~--~~w~v~l~~i~v~~-~~~-----~~~~~a 211 (323)
T 1izd_A 144 VKSS--LSEPIFAVALKH--NAPGVYDFGYTDSSKYTGSITYTDVDNSQ--GFWGFTADGYSIGS-DSS-----SDSITG 211 (323)
T ss_dssp HGGG--SSSSEEEEECCT--TSCEEEEESSCCTTSEEEEEEEEECBCTT--SSCEEEESEEEETT-EEE-----CCCEEE
T ss_pred HHHh--ccCcEEEEEccC--CCCCEEEECCcCccccccceEEEECCCCC--ceEEEEECeEEECC-ccc-----CCCceE
Confidence 9987 6 9999999996 3689999995 56788999999998544 69999999999999 542 345789
Q ss_pred EEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCceeeEEEE
Q 008104 426 LFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFH 504 (577)
Q Consensus 426 IiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~~ 504 (577)
||||||+++++|++++++|++++ ..... .....+.++ |+. .+|+|+|+|+| ++|+
T Consensus 212 iiDSGTs~~~lp~~~~~~i~~~i~ga~~~----~~~g~~~~~-C~~-------------~~P~i~f~fgg------~~~~ 267 (323)
T 1izd_A 212 IADTGTTLLLLDDSIVDAYYEQVNGASYD----SSQGGYVFP-SSA-------------SLPDFSVTIGD------YTAT 267 (323)
T ss_dssp EECTTCCSEEECHHHHHHHHTTSTTCEEE----TTTTEEEEE-TTC-------------CCCCEEEEETT------EEEE
T ss_pred EEeCCCcceeCCHHHHHHHHHhCCCcEEc----CcCCEEEEE-CCC-------------CCceEEEEECC------EEEe
Confidence 99999999999999999999988 43210 001112234 752 37999999965 8999
Q ss_pred ECCCccEEEeCCCceEEE-EEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecC
Q 008104 505 ISPEGYLVISKKGNICLG-ILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSH 562 (577)
Q Consensus 505 l~p~~yl~~~~~g~~Cl~-i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~ 562 (577)
|++++|++...++..|++ +.... ..+.||||+.|||++|+|||++++|||||++.
T Consensus 268 i~~~~~~~~~~~~~~C~~~i~~~~---~~~~~IlG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1izd_A 268 VPGEYISFADVGNGQTFGGIQSNS---GIGFSIFGDVFLKSQYVVFDASGPRLGFAAQA 323 (323)
T ss_dssp ECHHHHEEEECSTTEEEESEEECT---TTSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred cCHHHeEEecCCCCeEEEEEEcCC---CCCcEEEChHHhcCEEEEEECCCCEEEEeeCC
Confidence 999999987656779987 44432 34689999999999999999999999999863
No 25
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=100.00 E-value=2.6e-52 Score=455.58 Aligned_cols=335 Identities=23% Similarity=0.357 Sum_probs=254.9
Q ss_pred ceEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCC-CCCCCCCcCCCCCCccccCCCcchhhhhc
Q 008104 187 SSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSS-CAKGANPLYKPRMGNILPYKDSLCMEIQR 265 (577)
Q Consensus 187 ~~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~-C~~~~~~~ydps~Sstv~c~~~~c~~~~~ 265 (577)
...+||.. +.++.|+++|.||||||+|.|+|||||+++||+|. .|.. -.|..++.|||++|+| +..
T Consensus 41 ~~~~~l~n--~~~~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~-~C~~~~~C~~~~~y~~~~SsT----------~~~ 107 (478)
T 1qdm_A 41 GDIVALKN--YMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSA-KCYFSIACYLHSRYKAGASST----------YKK 107 (478)
T ss_dssp SCSGGGCC--GGGCCEEEEEEETTTTEEEEEEEETTCCCCEEEBT-TCCSCGGGGGSCCBCGGGCTT----------CBC
T ss_pred CceEEeEe--ccCCEEEEEEEECCCCeEEEEEEcCCCcceEEecC-CCCCCccccCCCCCCcccCCC----------eee
Confidence 34467763 35779999999999999999999999999999998 8952 1234678999999985 222
Q ss_pred CCCCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCCC-
Q 008104 266 NHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVS- 344 (577)
Q Consensus 266 ~~~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~S- 344 (577)
.+|.|.+.|++| .+.|.+++|+|+| |+..++++.|||++.+.+..+. ...+|||||||++.++
T Consensus 108 ----------~~~~~~i~Yg~G-s~~G~~~~Dtv~i----g~~~v~~~~Fg~a~~~~~~~f~-~~~~dGIlGLg~~~~s~ 171 (478)
T 1qdm_A 108 ----------NGKPAAIQYGTG-SIAGYFSEDSVTV----GDLVVKDQEFIEATKEPGITFL-VAKFDGILGLGFKEISV 171 (478)
T ss_dssp ----------CCCEEEEEETTE-EEEEEEEEEEEEE----TTEEEEEEEEEEEEECCBSHHH-HCSSSEEEECSCGGGCG
T ss_pred ----------CCcEEEEEcCCC-CeEEEEEEEEEEE----CCeEECCEEEEEEEecCCcccc-cccccceeccccccccc
Confidence 258899999999 5999999999999 8899999999999987654322 3578999999997765
Q ss_pred -----ChHHHHhcCCc-cceEEEEeecCC--CCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCccee
Q 008104 345 -----LPSQLASQGII-KNVVGHCLTTNA--GGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLN 414 (577)
Q Consensus 345 -----~~~qL~~~g~i-~~~FSl~L~~~~--~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~ 414 (577)
++++|+++|+| .++||+||.++. ..+|.|+||+ ..++.|+++|+|+... .+|.|.|++|.|+++.+.
T Consensus 172 ~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~G~l~~~pv~~~---~~w~v~l~~i~v~g~~~~ 248 (478)
T 1qdm_A 172 GKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQK---GYWQFDMGDVLVGGKSTG 248 (478)
T ss_dssp GGCCCHHHHHTTTTCCSSSEEEEECCCC-----CEEEEETCCCTTSEEEEEEEEEEEEE---TTEEEEECCEEETTEECS
T ss_pred CCCCcHHHHHHHCCCCCCCEEEEEeecCCCCCCCeEEEeCCcCHhhcCCCceEEeccCC---CeEEEEEeEEEECCEEEe
Confidence 57899999999 899999999753 4589999995 5678899999999865 599999999999998765
Q ss_pred cCcccCCCccEEEecccccccccHHHHHHHHHHH-Hhh----------------------cCCC-------ceecCCCC-
Q 008104 415 LGARNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEV----------------------SSDG-------LVLDASDP- 463 (577)
Q Consensus 415 i~~~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~----------------------~~~~-------~~~~~~~~- 463 (577)
+. .....+||||||+++++|+++|++|.++| +.. +... +.-|....
T Consensus 249 ~~---~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~s~~Ck~~v~~yg~~ii~~l~~~~~p~~vC~~iglC~~~~~ 325 (478)
T 1qdm_A 249 FC---AGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFDGT 325 (478)
T ss_dssp TT---TTCEEEEECSSCCSEEECHHHHHHHHHHHTCCCBCCHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHTTCC-----
T ss_pred ec---CCCceEEEcCCCCceeCCHHHHHHHHHHhCccccccccccchhhhhhhHHHHhhhhccChhhhhccccccccCcc
Confidence 53 34588999999999999999999999998 431 0000 00000000
Q ss_pred -----------------------------------------------------CCccccccCCCc---ccccccccccee
Q 008104 464 -----------------------------------------------------TLPVCWRAKFPI---RSIVDVKQFFKT 487 (577)
Q Consensus 464 -----------------------------------------------------~~~~C~~~~~~~---~~~~~~~~~~P~ 487 (577)
-...|+..+... ....+....+|+
T Consensus 326 ~~~~~~~~~v~~~~~~~~~~~~~~~~C~~Ce~~v~~~~~~l~~n~t~~~I~~~~~~~C~~~~~~~g~~~v~C~~~~~lP~ 405 (478)
T 1qdm_A 326 RGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPD 405 (478)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCBCCSSSCCEECGGGGTTCCC
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHHHHHhccccHHHHHHHHHHHhhccCCCCCeEEeeccccccccc
Confidence 001233322110 000011245899
Q ss_pred EEEEEcccCceeeEEEEECCCccEEEeCC--CceEEEEEcCCCC--CCCCceEeChhhhccEEEEEECCCCEEEEEecC
Q 008104 488 LTLHFGSKWQIVSTKFHISPEGYLVISKK--GNICLGILDGSEV--HNGSTIILGDISLRGQLVVYDNVNKRIGWAKSH 562 (577)
Q Consensus 488 l~f~F~gg~~~~~~~~~l~p~~yl~~~~~--g~~Cl~i~~~~~~--~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~ 562 (577)
|+|+|+| +.|.|+|++|++.... +.+|++.+...+. +.++.||||+.|||++|+|||++++|||||++.
T Consensus 406 i~f~~gg------~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~fl~~~y~vfD~~~~rIGfA~a~ 478 (478)
T 1qdm_A 406 IEFTIGG------KKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 478 (478)
T ss_dssp EEEEETT------EEEEECHHHHEEECSCGGGCCEEESEEECCCCTTSCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEECC------EEEEEChHHhEEEccCCCCCeEEEEEEeccCCCCCCCcEEECHHHhccEEEEEECCCCEEEEEeCC
Confidence 9999987 8999999999998644 3689864432221 235789999999999999999999999999863
No 26
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=100.00 E-value=4e-52 Score=434.43 Aligned_cols=308 Identities=15% Similarity=0.205 Sum_probs=252.3
Q ss_pred ceEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCC--CCCCCCCCcCCCCCCccccCCCcchhhhh
Q 008104 187 SSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCS--SCAKGANPLYKPRMGNILPYKDSLCMEIQ 264 (577)
Q Consensus 187 ~~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~--~C~~~~~~~ydps~Sstv~c~~~~c~~~~ 264 (577)
++..||.. +.+..|+++|.|| ||++.|+|||||+++||+|. .|. .|.+..++.|||++| |. .
T Consensus 6 ~~~~~l~n--~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~-~C~~~~C~~~~~~~y~~~~S-T~----------~ 69 (330)
T 1yg9_A 6 PLYKLVHV--FINTQYAGITKIG--NQNFLTVFDSTSCNVVVASQ-ECVGGACVCPNLQKYEKLKP-KY----------I 69 (330)
T ss_dssp CSCSCEEE--EECTTSEEEEEET--TEEEEEEEETTCCCEEEECT-TCCSGGGGSTTCCCCCCSSC-EE----------E
T ss_pred eeEeeeec--CCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecC-CCCCccCcccccCccCCCCC-ce----------E
Confidence 44556653 4567999999999 89999999999999999998 897 564477899999999 72 2
Q ss_pred cCCCCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCCC
Q 008104 265 RNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVS 344 (577)
Q Consensus 265 ~~~~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~S 344 (577)
.. ++.|++.|++| .+.|.+++|+|+| |+++++++.|||++.....+. ...++||||||++.++
T Consensus 70 ~~----------~~~~~i~Yg~G-s~~G~~~~Dtv~i----g~~~~~~~~fg~~~~~~~~f~--~~~~~GilGLg~~~~s 132 (330)
T 1yg9_A 70 SD----------GNVQVKFFDTG-SAVGRGIEDSLTI----SQLTTSQQDIVLADELSQEVC--ILSADVVVGIAAPGCP 132 (330)
T ss_dssp EE----------EEEEEEETTTE-EEEEEEEEEEEEE----TTEEEEEEEEEEEEEECTHHH--HTTCSEEEECSCTTSC
T ss_pred EC----------CCEEEEEECCc-eEEEEEEEEEEEE----CCEEEcCeEEEEEEEcccccc--cccCceEEEcCcchhc
Confidence 21 47899999999 5699999999999 889999999999998733332 3578999999998765
Q ss_pred -------ChHHHHhcCCccceEEEEeecCCCC--CeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcce
Q 008104 345 -------LPSQLASQGIIKNVVGHCLTTNAGG--GGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPL 413 (577)
Q Consensus 345 -------~~~qL~~~g~i~~~FSl~L~~~~~~--~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l 413 (577)
++++|+++|+|.++||+||.+.... +|.|+||+ ..++.|+++|+|+... .+|.|.|++|.|+++.+
T Consensus 133 ~~~~~~~~~~~l~~qg~i~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~w~v~l~~i~v~~~~~ 209 (330)
T 1yg9_A 133 NALKGKTVLENFVEENLIAPVFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVGD---DSWKFRLDGVKIGDTTV 209 (330)
T ss_dssp CTTSCCCHHHHHHHTTSSCSEEEEEEEECTTSCEEEEEEETSCCGGGEEEEEEEEEBSCT---TSCCEECSEEEETTEEE
T ss_pred cccCCCCHHHHHHhcCCCCceEEEEEcCCCCCCCCCEEEECCcCHHHccCceEEEECCCC---CEEEEEeCeEEECCEEE
Confidence 7899999998899999999986333 89999995 5678899999999854 69999999999999876
Q ss_pred ecCcccCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCC-CCccccccCCCccccccccccceeEEEE
Q 008104 414 NLGARNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDP-TLPVCWRAKFPIRSIVDVKQFFKTLTLH 491 (577)
Q Consensus 414 ~i~~~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~-~~~~C~~~~~~~~~~~~~~~~~P~l~f~ 491 (577)
. .....+||||||++++||++++++|++++ +.....+ +..+ .++ |+.. ..+|+|+|+
T Consensus 210 ~-----~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~~g----~~~~~~~~-C~~~-----------~~~p~i~f~ 268 (330)
T 1yg9_A 210 A-----PAGTQAIIDTSKAIIVGPKAYVNPINEAIGCVVEKTT----TRRICKLD-CSKI-----------PSLPDVTFV 268 (330)
T ss_dssp E-----CTTCEEEECTTCSSEEEEHHHHHHHHHHHTCEEEECS----SCEEEEEC-GGGG-----------GGSCCEEEE
T ss_pred c-----CCCcEEEEecCCccccCCHHHHHHHHHHhCCcccCCC----ceEEEEEE-CCCc-----------cccCcEEEE
Confidence 4 24578999999999999999999999999 5432111 0012 344 7642 247999999
Q ss_pred EcccCceeeEEEEECCCccEEEeCCCceEEE-EEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecC
Q 008104 492 FGSKWQIVSTKFHISPEGYLVISKKGNICLG-ILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSH 562 (577)
Q Consensus 492 F~gg~~~~~~~~~l~p~~yl~~~~~g~~Cl~-i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~ 562 (577)
|+| ++|+|++++|+++. +..|+. +.... .++.||||++|||++|+|||++++|||||+++
T Consensus 269 fgg------~~~~l~~~~y~~~~--~~~C~~~i~~~~---~~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~ 329 (330)
T 1yg9_A 269 ING------RNFNISSQYYIQQN--GNLCYSGFQPCG---HSDHFFIGDFFVDHYYSEFNWENKTMGFGRSV 329 (330)
T ss_dssp ETT------EEEEECHHHHEEEE--TTEEEESEEEET---TCSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred ECC------EEEEECHHHhcccC--CCcEEEEEEeCC---CCCeEEecHHHhhheEEEEECCCCEEEEEECC
Confidence 976 89999999999976 678975 44322 34689999999999999999999999999874
No 27
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=100.00 E-value=1.1e-52 Score=455.00 Aligned_cols=308 Identities=17% Similarity=0.277 Sum_probs=254.8
Q ss_pred ceEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcC
Q 008104 187 SSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRN 266 (577)
Q Consensus 187 ~~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~ 266 (577)
...+||.. +.+..|+++|.||||||++.|+|||||+++||+|. .|....|..++.|+|++|+| +...
T Consensus 126 ~~~~pL~n--~~d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~-~C~s~~C~~~~~ydps~SsT----------~~~~ 192 (451)
T 3qvc_A 126 FDNVELKD--LANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSI-KCTSESCESKNHYDSSKSKT----------YEKD 192 (451)
T ss_dssp -CCCCGGG--GBCEEEEEEEEETTTTEEEEEEEESSBCSEEEEBT-TCCSGGGTTSCCBCGGGCTT----------CEEE
T ss_pred CCccceee--cCCCEEEEEEEECCCCcEEEEEEcCCCccEEEecC-CCCccccCCCCCCCCCCCcc----------cccC
Confidence 34567763 45789999999999999999999999999999998 89655557789999999985 3222
Q ss_pred CCCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEc----cCccccccCCccceEEecCCCC
Q 008104 267 HKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYD----QQGLLLNTLVKTDGILGLSRAK 342 (577)
Q Consensus 267 ~~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~----~~g~~~~~~~~~dGIlGLg~~~ 342 (577)
+|.|.+.|++|+ +.|.+++|+|+| |+..++ +.|||++. .++ +. ...++||||||++.
T Consensus 193 ----------~~~f~i~YgdGs-~~G~~~~Dtv~i----gg~~v~-~~Fg~a~~t~~~~~~-f~--~~~~dGILGLg~~~ 253 (451)
T 3qvc_A 193 ----------DTPVKLTSKAGT-ISGIFSKDLVTI----GKLSVP-YKFIEMTEIVGFEPF-YS--ESDVDGVFGLGWKD 253 (451)
T ss_dssp ----------EEEEEEECSSEE-EEEEEEEEEEEE----TTEEEE-EEEEEEEEEEECTTH-HH--HSCCCEEEECSSBC
T ss_pred ----------CCEEEEEECCCE-EEEEEEEEEEEE----CCEEEE-EEEEEEEeccccCCC-cc--CCCCCEEEecCCCc
Confidence 589999999995 999999999999 899999 99999998 666 43 35789999999975
Q ss_pred C------CChHHHHhcCCc-cceEEEEeecCCCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcce
Q 008104 343 V------SLPSQLASQGII-KNVVGHCLTTNAGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPL 413 (577)
Q Consensus 343 ~------S~~~qL~~~g~i-~~~FSl~L~~~~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l 413 (577)
+ +++++|+++|+| +++||+||.+....+|.|+||+ ..++.|+++|+|+... .+|.|.++ |.|+++ .
T Consensus 254 ~s~~~~~~~~~~L~~qg~I~~~~FS~~L~~~~~~~G~l~fGgiD~s~y~G~l~~~pv~~~---~~w~v~l~-I~Vgg~-~ 328 (451)
T 3qvc_A 254 LSIGSIDPYIVELKTQNKIEQAVYSIYLPPENKNKGYLTIGGIEERFFDGPLNYEKLNHD---LMWQVDLD-VHFGNV-S 328 (451)
T ss_dssp SSSSCCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEECSST---TSSEEEEE-EEETTE-E
T ss_pred ccccCCCCHHHHHHHcCCCCCCEEEEEEcCCCCCCCEEEECCcchhhcCCceEEEEcccC---CeeEEEEE-EEECCc-c
Confidence 3 578999999999 9999999998766799999994 5778899999999865 69999999 999997 1
Q ss_pred ecCcccCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEE
Q 008104 414 NLGARNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHF 492 (577)
Q Consensus 414 ~i~~~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F 492 (577)
.....+||||||+++++|++++++|++++ +.... ....+.++ |+ . ..+|+|+|+|
T Consensus 329 ------~~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~~~~-----~~g~y~v~-C~-~-----------~~~P~itf~f 384 (451)
T 3qvc_A 329 ------SKKANVILDSATSVITVPTEFFNQFVESASVFKVP-----FLSLYVTT-CG-N-----------TKLPTLEYRS 384 (451)
T ss_dssp ------EEEEEEEECTTBSSEEECHHHHHHHHTTTTCEECT-----TSSCEEEE-TT-C-----------TTCCCEEEEE
T ss_pred ------CCCceEEEeCCCccccCCHHHHHHHHHHcCCeecC-----CCCeEEee-CC-c-----------CcCCcEEEEE
Confidence 23578999999999999999999999999 54431 01112233 65 1 2479999999
Q ss_pred cccCceeeEEEEECCCccEEEeC--CCceEEEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecC
Q 008104 493 GSKWQIVSTKFHISPEGYLVISK--KGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSH 562 (577)
Q Consensus 493 ~gg~~~~~~~~~l~p~~yl~~~~--~g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~ 562 (577)
+| +.++|++++|+++.. ++..|+..+...+.. .+.||||++|||++|+|||++++|||||+++
T Consensus 385 gg------~~i~lp~~~yi~~~~~~~~~~C~~~i~~~~~~-~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ak 449 (451)
T 3qvc_A 385 PN------KVYTLEPKQYLEPLENIFSALCMLNIVPIDLE-KNTFVLGDPFMRKYFTVYDYDNHTVGFALAK 449 (451)
T ss_dssp TT------EEEEECHHHHEEECTTTSTTEEEECEEECCCS-TTEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred CC------EEEEEcHHHheeecccCCCCeEEEEEEeCCCC-CCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 87 899999999999854 357897544433211 5789999999999999999999999999975
No 28
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-51 Score=438.52 Aligned_cols=327 Identities=20% Similarity=0.349 Sum_probs=249.8
Q ss_pred CceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCCCCc
Q 008104 199 DGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQC 278 (577)
Q Consensus 199 ~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~~~ 278 (577)
+..|+++|.||||||++.|+|||||+++||+|. +|..| ++.|||++|+| +... .|
T Consensus 12 ~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~-~c~~~----~~~f~~~~SsT----------~~~~----------~~ 66 (383)
T 2ewy_A 12 GRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGT-PHSYI----DTYFDTERSST----------YRSK----------GF 66 (383)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECS-CBTTB----SCCCCGGGCTT----------CEEE----------EE
T ss_pred CCcEEEEEEecCCCceEEEEEecCCCceEEecC-CCCcc----ccCcccccCcc----------ceeC----------Cc
Confidence 458999999999999999999999999999998 78665 57899999985 3222 58
Q ss_pred eeEEEeCCCCeEEEEEEEEEEEEeecCCCcc--ccceEEEEEEccCccccccCCccceEEecCCCCC--------CChHH
Q 008104 279 DYEIEYADHSSSMGVLARDELHLTIENGSLT--KPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV--------SLPSQ 348 (577)
Q Consensus 279 ~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~--~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~--------S~~~q 348 (577)
.|++.|++| .+.|.+++|+|+| ++.. ...+.|+++....+.+.. ...++||||||++.+ +++++
T Consensus 67 ~~~i~Yg~G-s~~G~~~~Dtv~i----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dGilGLg~~~~s~~~~~~~~~~~~ 140 (383)
T 2ewy_A 67 DVTVKYTQG-SWTGFVGEDLVTI----PKGFNTSFLVNIATIFESENFFLP-GIKWNGILGLAYATLAKPSSSLETFFDS 140 (383)
T ss_dssp EEEEECSSC-EEEEEEEEEEEEE----TTTEEEEEEEEEEEEEEEESCSCT-TCCCCEEEECSCGGGCSSCTTSCCHHHH
T ss_pred eEEEEECCc-EEEEEEEEEEEEE----CCCccceeEEEEEEEEeecceeec-cCcCceEEecCchhcccccccccCHHHH
Confidence 899999999 5799999999999 4432 224678887765544322 357899999999654 36789
Q ss_pred HHhcCCccceEEEEeec-------CCCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCccc
Q 008104 349 LASQGIIKNVVGHCLTT-------NAGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARN 419 (577)
Q Consensus 349 L~~~g~i~~~FSl~L~~-------~~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~ 419 (577)
|++|+.++++||+||++ ....+|.|+||+ ..++.|+++|+|+... .+|.|.|++|.|+++.+.++.+.
T Consensus 141 l~~q~~i~~~FS~~l~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~v~l~~i~v~g~~~~~~~~~ 217 (383)
T 2ewy_A 141 LVTQANIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKEE---WYYQIEILKLEIGGQSLNLDCRE 217 (383)
T ss_dssp HHHHHTCCSCEEEEECCC---------CCEEEEETSCCGGGCCSCEEEEECSSB---TTBBCCEEEEEETTEECCCCTTT
T ss_pred HHHccCCCcceEEEeeccccccccCCCCCeEEEeCccchhhccCccEEEecCCC---ceEEEEEEEEEECCEEccccccc
Confidence 99999888899999974 235689999995 5778899999999875 59999999999999988765433
Q ss_pred CCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCce
Q 008104 420 SQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQI 498 (577)
Q Consensus 420 ~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~ 498 (577)
.....+||||||++++||+++|++|++++ +..................|+.... .....+|+|+|+|+|+...
T Consensus 218 ~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~------~~~~~~P~i~f~f~g~~~~ 291 (383)
T 2ewy_A 218 YNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLIPEFSDGFWTGSQLACWTNSE------TPWSYFPKISIYLRDENSS 291 (383)
T ss_dssp TTSSCEEECTTCSSEEEEHHHHHHHHHHHHHTTCSSCCCHHHHHTSEEEEECSSS------CGGGGSCCEEEEEECSSTT
T ss_pred cCCccEEEEcCCccccCCHHHHHHHHHHHhhhcccccCccccccccccccccCCc------ccHhhCCcEEEEECCCCCC
Confidence 33578999999999999999999999999 6543110000000001223876431 1224589999999884222
Q ss_pred eeEEEEECCCccEEEeC---CCceEEEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecCCCCCCC
Q 008104 499 VSTKFHISPEGYLVISK---KGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGR 568 (577)
Q Consensus 499 ~~~~~~l~p~~yl~~~~---~g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~C~~~~~ 568 (577)
...+|+|++++|+++.. .+..|+++.... ..+.||||+.|||++|+|||++++|||||+++|+...+
T Consensus 292 ~~~~~~l~~~~yi~~~~~~~~~~~C~~~~i~~---~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~~~~ 361 (383)
T 2ewy_A 292 RSFRITILPQLYIQPMMGAGLNYECYRFGISP---STNALVIGATVMEGFYVIFDRAQKRVGFAASPCAEIAG 361 (383)
T ss_dssp EEEEEEECHHHHEEEECCCTTCSEEEEESEEE---ESSCEEECHHHHTTEEEEEETTTTEEEEEECTTCBSSS
T ss_pred ceEEEEEChHHheeecccCCCCceeEEEEecC---CCCcEEEChHHhCCeeEEEECCCCeEEEEeccCCCcCC
Confidence 23589999999998753 356897632111 13579999999999999999999999999999986544
No 29
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=100.00 E-value=3.4e-52 Score=433.70 Aligned_cols=297 Identities=19% Similarity=0.286 Sum_probs=244.4
Q ss_pred CCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCCCC
Q 008104 198 PDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQ 277 (577)
Q Consensus 198 ~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~~ 277 (577)
.++.|+++|.|| ||++.|+|||||+++||+|. +|..|.|..++.|||++|+ . .. +.
T Consensus 13 ~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~-~C~~~~c~~~~~y~~~~Ss-~----------~~----------~~ 68 (323)
T 1bxo_A 13 NDEEYITPVTIG--GTTLNLNFDTGSADLWVFST-ELPASQQSGHSVYNPSATG-K----------EL----------SG 68 (323)
T ss_dssp GGSCEEEEEEET--TEEEEEEEETTCCCEEECBT-TSCHHHHTTSCCBCHHHHC-E----------EE----------EE
T ss_pred CCCEEEEEEEEC--CEEEEEEEeCCCcceEEecC-CCCchhccCCCCCCcccCC-c----------cc----------CC
Confidence 356899999999 89999999999999999998 9999999899999998776 1 11 15
Q ss_pred ceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCC---------CChHH
Q 008104 278 CDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV---------SLPSQ 348 (577)
Q Consensus 278 ~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~---------S~~~q 348 (577)
|.|++.|++|+.+.|.+++|+|+| |+.+++++.|||++..++.+.. ...++||||||++.+ +++++
T Consensus 69 ~~~~i~Yg~Gs~~~G~~~~D~v~i----g~~~v~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~s~~~~~~~~~~~~~ 143 (323)
T 1bxo_A 69 YTWSISYGDGSSASGNVFTDSVTV----GGVTAHGQAVQAAQQISAQFQQ-DTNNDGLLGLAFSSINTVQPQSQTTFFDT 143 (323)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEE----TTEEEEEEEEEEEEEECHHHHT-CTTCSEEEECSCGGGCCCBSSCCCCHHHH
T ss_pred CeEEEEeCCCCeEEEEEEEEEEEE----CCEEECcEEEEEEEecCccccc-CCCCceEEEeCcccccccccCCCCCHHHH
Confidence 899999999977999999999999 8899999999999987665542 357899999999653 36789
Q ss_pred HHhcCCc-cceEEEEeecCCCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCcccCCCccE
Q 008104 349 LASQGII-KNVVGHCLTTNAGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWA 425 (577)
Q Consensus 349 L~~~g~i-~~~FSl~L~~~~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~~~~~~a 425 (577)
|+++ | +++||+||.+ ..+|.|+||+ ..++.|+++|+|+.... .+|.|.|++|.|++ +. .....+
T Consensus 144 l~~~--i~~~~FS~~L~~--~~~G~l~fGg~d~~~~~g~l~~~p~~~~~--~~w~v~l~~i~v~~--~~-----~~~~~a 210 (323)
T 1bxo_A 144 VKSS--LAQPLFAVALKH--QQPGVYDFGFIDSSKYTGSLTYTGVDNSQ--GFWSFNVDSYTAGS--QS-----GDGFSG 210 (323)
T ss_dssp HGGG--BSSSEEEEECCS--SSCEEEEESSCCGGGBSSCCEEEECBCTT--SSCEEEEEEEEETT--EE-----EEEEEE
T ss_pred HHHh--cCCcEEEEEEeC--CCCceEEEeCcChhhccCceEEEECCCCC--CeEEEEEeeEEECC--cc-----CCCceE
Confidence 9987 6 8999999986 3689999995 56789999999998554 69999999999999 22 235789
Q ss_pred EEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCceeeEEEE
Q 008104 426 LFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFH 504 (577)
Q Consensus 426 IiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~~ 504 (577)
||||||+++++|++++++|++++ .+... .....+.++ |+. .+|+|+|+|+| +.|+
T Consensus 211 iiDSGTs~~~lP~~~~~~l~~~i~~a~~~----~~~g~~~~~-C~~-------------~~P~i~f~fgg------~~~~ 266 (323)
T 1bxo_A 211 IADTGTTLLLLDDSVVSQYYSQVSGAQQD----SNAGGYVFD-CST-------------NLPDFSVSISG------YTAT 266 (323)
T ss_dssp EECTTCSSEEECHHHHHHHHTTSTTCEEE----TTTTEEEEC-TTC-------------CCCCEEEEETT------EEEE
T ss_pred EEeCCCCceeCCHHHHHHHHHhCCCceEc----CcCCEEEEE-CCC-------------CCceEEEEECC------EEEE
Confidence 99999999999999999999998 43211 011112234 752 37999999966 8999
Q ss_pred ECCCccEEEeCC-CceEEEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecC
Q 008104 505 ISPEGYLVISKK-GNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSH 562 (577)
Q Consensus 505 l~p~~yl~~~~~-g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~ 562 (577)
|++++|++...+ ...|++.+...+ ..+.||||++|||++|+|||++++|||||++.
T Consensus 267 l~~~~~~~~~~~~~~~C~~~i~~~~--~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1bxo_A 267 VPGSLINYGPSGDGSTCLGGIQSNS--GIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA 323 (323)
T ss_dssp ECHHHHEEEECSSSSCEEESEEECT--TCSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred ECHHHeEEeccCCCCeEEEEEECCC--CCCcEEEChHHHcCEEEEEECCCCEEEEecCC
Confidence 999999987643 478987443321 34689999999999999999999999999863
No 30
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=100.00 E-value=1.4e-51 Score=448.43 Aligned_cols=329 Identities=20% Similarity=0.318 Sum_probs=255.4
Q ss_pred CceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCCCCc
Q 008104 199 DGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQC 278 (577)
Q Consensus 199 ~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~~~ 278 (577)
+..|+++|.||||||+++|+|||||+++||+|. +| | ..++.|+|++|+| +... .|
T Consensus 73 ~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~-~c--c--~~~~~y~~~~SsT----------~~~~----------~~ 127 (455)
T 3lpj_A 73 GQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAA-PH--P--FLHRYYQRQLSST----------YRDL----------RK 127 (455)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECS-CC--T--TCSCCCCGGGCTT----------CEEE----------EE
T ss_pred CCEEEEEEEECCCCeEEEEEEcCCCcceEEecc-cc--c--ccCCcccCCCCCC----------cccC----------Cc
Confidence 458999999999999999999999999999998 67 4 4678999999985 3322 58
Q ss_pred eeEEEeCCCCeEEEEEEEEEEEEeecCCCcccc-ceEEEEEEccCccccccCCccceEEecCCCCC--------CChHHH
Q 008104 279 DYEIEYADHSSSMGVLARDELHLTIENGSLTKP-NVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV--------SLPSQL 349 (577)
Q Consensus 279 ~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~-~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~--------S~~~qL 349 (577)
.|.+.|++| .+.|.+++|+|+|+ ++..+. .+.|+++....+.+.. ...++||||||++.+ +++++|
T Consensus 128 ~~~i~Yg~G-s~~G~~~~Dtv~ig---~~~~~~~~~~~~~~~~~~~~~~~-~~~~dGIlGLg~~~~s~~~~~~~~~~~~L 202 (455)
T 3lpj_A 128 GVYVPYTQG-KWEGELGTDLVSIP---HGPNVTVRANIAAITESDKFFIN-GSNWEGILGLAYAEIARPDDSLEPFFDSL 202 (455)
T ss_dssp EEEEECSSC-EEEEEEEEEEEECT---TSCSCEEEEEEEEEEEEESCSCT-TCCCCEEEECSCGGGCSSCTTSCCHHHHH
T ss_pred cEEEEeCCe-EEEEEEEEEEEEEC---CCcceeeEEEEEEEEccCccccc-CCCcceEEEeCccccccccCCCCcHHHHH
Confidence 899999999 67999999999993 122222 4678988876655432 467899999999643 578899
Q ss_pred HhcCCccceEEEEeecC----------CCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCc
Q 008104 350 ASQGIIKNVVGHCLTTN----------AGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGA 417 (577)
Q Consensus 350 ~~~g~i~~~FSl~L~~~----------~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~ 417 (577)
++|+.|.++||+||.+. ...+|.|+||+ ..++.|+++|+|+... .+|.|.+++|.|+++.+.++.
T Consensus 203 ~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~w~v~l~~i~v~g~~~~~~~ 279 (455)
T 3lpj_A 203 VKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRRE---WYYEVIIVRVEINGQDLKMDC 279 (455)
T ss_dssp HHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCSB---TTBBCCEEEEEETTEECCCCG
T ss_pred HHccCCCceeEEEeccccccccccccccCCCceEEECCcCcccccCceEEEecCCC---ceeEEEEeEEEECCEEccccc
Confidence 99999988999999753 35689999994 5778899999999875 599999999999999887654
Q ss_pred ccCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccC
Q 008104 418 RNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKW 496 (577)
Q Consensus 418 ~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~ 496 (577)
...+...+||||||++++||++++++|+++| +......+........+..|+.... ..+..+|+|+|+|+|+.
T Consensus 280 ~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~g~~~~C~~~~~------~~~~~~P~i~f~f~g~~ 353 (455)
T 3lpj_A 280 KEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGT------TPWNIFPVISLYLMGEV 353 (455)
T ss_dssp GGGGSSCEEECTTSSSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTC------CCGGGSCCEEEEEECSS
T ss_pred cccCCCeEEEECCCcceeCCHHHHHHHHHHhhhhccccccCcccccCcceecccccC------CchhcCCcEEEEEcCCC
Confidence 3323578999999999999999999999999 6643111100000111234876532 12345899999999862
Q ss_pred ceeeEEEEECCCccEEEeCCC----ceEEEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecCCCCCCCC
Q 008104 497 QIVSTKFHISPEGYLVISKKG----NICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRF 569 (577)
Q Consensus 497 ~~~~~~~~l~p~~yl~~~~~g----~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~C~~~~~~ 569 (577)
.....+|+|++++|+++..+. ..|+++.... ..+.||||+.|||++|+|||++++|||||+++|+...++
T Consensus 354 ~~~~~~~~l~~~~yi~~~~~~~~~~~~C~~f~~~~---~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~~~~~ 427 (455)
T 3lpj_A 354 TNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQ---SSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEF 427 (455)
T ss_dssp TTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEE---ESSCEEECHHHHTTEEEEEETTTTEEEEEEETTCCCCSS
T ss_pred cCceEEEEECHHHheEeccCCCCCCceEEEEeccC---CCCcEEEChHHhCCeEEEEECCCCEEEEEeccccccccc
Confidence 222347999999999986432 5898743221 246799999999999999999999999999999887744
No 31
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=100.00 E-value=3.3e-51 Score=438.57 Aligned_cols=328 Identities=20% Similarity=0.313 Sum_probs=251.6
Q ss_pred CceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCCCCc
Q 008104 199 DGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQC 278 (577)
Q Consensus 199 ~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~~~ 278 (577)
+..|+++|.||||||+++|+|||||+++||+|. +| | ..++.|+|++|+| +... .|
T Consensus 27 ~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~-~c--~--~~~~~y~~~~SsT----------~~~~----------~~ 81 (402)
T 3vf3_A 27 GQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAA-PH--P--FLHRYYQRQLSST----------YRDL----------RK 81 (402)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECS-CC--T--TCSCCCCGGGCTT----------CEEE----------EE
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCCceEEccC-CC--C--cccCCcCcccCcc----------cccC----------CC
Confidence 348999999999999999999999999999998 77 3 4578999999985 3322 58
Q ss_pred eeEEEeCCCCeEEEEEEEEEEEEeecCC-Ccccc-ceEEEEEEccCccccccCCccceEEecCCCC--------CCChHH
Q 008104 279 DYEIEYADHSSSMGVLARDELHLTIENG-SLTKP-NVVFGCAYDQQGLLLNTLVKTDGILGLSRAK--------VSLPSQ 348 (577)
Q Consensus 279 ~~~i~YgdGs~~~G~~~~D~v~l~~~~g-~~~~~-~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~--------~S~~~q 348 (577)
.|.+.|++| .+.|.+++|+|+| + +..+. .+.|+++....+.+.. ...++||||||++. .+++++
T Consensus 82 ~~~i~Yg~G-s~~G~~~~D~v~i----g~~~~~~~~~~~~~~~~~~~~~~~-~~~~dGIlGLg~~~~s~~~~~~~~~~~~ 155 (402)
T 3vf3_A 82 GVYVPYTQG-KWEGELGTDLVSI----PHGPNVTVRANIAAITESDKFFIN-GSNWEGILGLAYAEIARPDDSLEPFFDS 155 (402)
T ss_dssp EEEEECSSC-EEEEEEEEEEEEC----TTSCSCEEEEEEEEEEEEESCSCT-TCCCCEEEECSCGGGCSSCTTSCCHHHH
T ss_pred EEEEEECcE-EEEEEEEEEEEEE----CCccccceeeeEEEEEcccccccc-CCCccceEEcCchhhcccCCcCCcHHHH
Confidence 999999999 5799999999999 4 34333 3457887776554432 45789999999964 357889
Q ss_pred HHhcCCccceEEEEeecC----------CCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecC
Q 008104 349 LASQGIIKNVVGHCLTTN----------AGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLG 416 (577)
Q Consensus 349 L~~~g~i~~~FSl~L~~~----------~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~ 416 (577)
|++++.|.++||+||.+. ...+|.|+||+ ..++.|+++|+|+... .+|.|.+++|.|+++.+.++
T Consensus 156 L~~q~~i~~~FS~~l~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~w~v~l~~i~v~g~~~~~~ 232 (402)
T 3vf3_A 156 LVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRRE---WYYEVIIVRVEINGQDLKMD 232 (402)
T ss_dssp HHHHSCCCSCEEEEECCCC-------------EEEEESSCCGGGEEEEEEEEECSSB---TTBEECEEEEEETTEECCCC
T ss_pred HHHccCCccceEEEeecccccccccccccCCCCEEEeCCcCcccccCceEEEeCCcC---cEEEEEEeEEEECCEEeccc
Confidence 999999988999999742 34589999995 5778899999999875 59999999999999988765
Q ss_pred cccCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEccc
Q 008104 417 ARNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSK 495 (577)
Q Consensus 417 ~~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg 495 (577)
....+...+||||||++++||.+++++|++++ +......+...........|+.... ..+..+|+|+|+|+++
T Consensus 233 ~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~------~~~~~~P~i~f~f~g~ 306 (402)
T 3vf3_A 233 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGT------TPWNIFPVISLYLMGE 306 (402)
T ss_dssp GGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCTTGGGTCSCEEEETTC------CCGGGSCCEEEEEECS
T ss_pred ccccCCCeEEEECCCCcccCCHHHHHHHHHHHhhhccccccCcccccccccccccccc------chHhhCCceEEEEecC
Confidence 43323578999999999999999999999999 6643111100000011234876431 1233589999999985
Q ss_pred CceeeEEEEECCCccEEEeCCC----ceEEEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecCCCCCCCC
Q 008104 496 WQIVSTKFHISPEGYLVISKKG----NICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRF 569 (577)
Q Consensus 496 ~~~~~~~~~l~p~~yl~~~~~g----~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~C~~~~~~ 569 (577)
......+|+|+|++|+++..+. ..|+++.... ..+.||||++|||++|+|||++++|||||+++|+..++.
T Consensus 307 ~~~~~~~~~l~~~~yi~~~~~~~~~~~~C~~~~~~~---~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~~~~~ 381 (402)
T 3vf3_A 307 VTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQ---SSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEF 381 (402)
T ss_dssp STTEEEEEEECHHHHEEECCCGGGTTEEEEEECEEE---ESSCEEECHHHHTTEEEEEEGGGTEEEEEEETTCCBCSS
T ss_pred CCCceEEEEECHHHheehhccCCCCCceEEEEeccC---CCCcEEEChHHhCCeEEEEECCCCEEEEEecccCcccCc
Confidence 2222357999999999985432 4898632221 246799999999999999999999999999999987664
No 32
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=100.00 E-value=4.4e-51 Score=436.63 Aligned_cols=325 Identities=21% Similarity=0.345 Sum_probs=251.1
Q ss_pred CceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCCCCCCCCCCCc
Q 008104 199 DGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQC 278 (577)
Q Consensus 199 ~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~~~~c~~~~~~ 278 (577)
+..|+++|.||||+|++.|+|||||+++||+|. +|..| ++.||+++|+| +... .|
T Consensus 20 ~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~-~c~~~----~~~y~~~~SsT----------~~~~----------~~ 74 (395)
T 2qp8_A 20 GQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAA-PHPFL----HRYYQRQLSST----------YRDL----------RK 74 (395)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECS-CCTTC----SCCCCGGGCTT----------CEEE----------EE
T ss_pred CceEEEEEEecCCCceEEEEEecCCCceEEECC-CCccc----cCCcCcccCCC----------ceeC----------Cc
Confidence 558999999999999999999999999999998 77544 67899999985 3222 58
Q ss_pred eeEEEeCCCCeEEEEEEEEEEEEeecCC-Ccccc-ceEEEEEEccCccccccCCccceEEecCCCCC--------CChHH
Q 008104 279 DYEIEYADHSSSMGVLARDELHLTIENG-SLTKP-NVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV--------SLPSQ 348 (577)
Q Consensus 279 ~~~i~YgdGs~~~G~~~~D~v~l~~~~g-~~~~~-~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~--------S~~~q 348 (577)
.|++.|++| .+.|.+++|+|+| + +..+. .+.|++.....+.+.. ...++||||||++.+ +++++
T Consensus 75 ~~~i~Yg~G-s~~G~~~~Dtv~i----g~g~~~~~~~~~~~~~~~~~~f~~-~~~~dGIlGLg~~~~s~~~~~~~~~~~~ 148 (395)
T 2qp8_A 75 GVYVPYTQG-KWEGELGTDLVSI----PHGPNVTVRANIAAITESDKFFIN-GSNWEGILGLAYAEIARPDDSLEPFFDS 148 (395)
T ss_dssp EEEEECSSC-EEEEEEEEEEEEC----TTSCSCEEEEEEEEEEEEESCSCT-TCCCCEEEECSCGGGCSSCTTSCCHHHH
T ss_pred eEEEEECCc-EEEEEEEeEEEEE----CCCCCceEEEEEEEEEccCccccc-ccCccceEEcCchhhccCCCCCCCHHHH
Confidence 899999999 5699999999999 5 44443 4678887765444321 357899999999654 46789
Q ss_pred HHhcCCccceEEEEeecC----------CCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecC
Q 008104 349 LASQGIIKNVVGHCLTTN----------AGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLG 416 (577)
Q Consensus 349 L~~~g~i~~~FSl~L~~~----------~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~ 416 (577)
|++|+.|.++||+||.+. ...+|.|+||+ ..++.|++.|+|+... .+|.|.|++|.|+++.+.++
T Consensus 149 l~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~v~l~~i~v~g~~~~~~ 225 (395)
T 2qp8_A 149 LVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRRE---WYYEVIIVRVEINGQDLKMD 225 (395)
T ss_dssp HHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCSB---TTBBCCEEEEEETTEECCCC
T ss_pred HHHccCCcceEEEEeccccccccccccccCCCcEEEECCcCcccccCceEEeccCCC---ceEEEEEEEEEECCEEcccC
Confidence 999999988999999853 14689999995 4678899999999875 59999999999999988665
Q ss_pred cccCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecC-CCCCCccccccCCCccccccccccceeEEEEEcc
Q 008104 417 ARNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDA-SDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGS 494 (577)
Q Consensus 417 ~~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~-~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~g 494 (577)
.+......+||||||++++||+++|++|++++ +......+.... ....++ |+.... .....+|+|+|+|+|
T Consensus 226 ~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~-C~~~~~------~~~~~~P~i~f~f~g 298 (395)
T 2qp8_A 226 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLV-CWQAGT------TPWNIFPVISLYLMG 298 (395)
T ss_dssp GGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCE-EESTTC------CCGGGSCCEEEEEEC
T ss_pred ccccCCceEEEEcCCCcEecCHHHHHHHHHHHhhhcccccCCcccccccccc-cccccc------chHhhCCcEEEEEcc
Confidence 33223468999999999999999999999999 654311110000 011233 876431 123468999999998
Q ss_pred cCceeeEEEEECCCccEEEeCC----CceEEE--EEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecCCCCCCC
Q 008104 495 KWQIVSTKFHISPEGYLVISKK----GNICLG--ILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGR 568 (577)
Q Consensus 495 g~~~~~~~~~l~p~~yl~~~~~----g~~Cl~--i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~C~~~~~ 568 (577)
+......+|+|+|++|+++..+ ...|++ +... .+.||||+.|||++|+|||++++|||||+++|+...+
T Consensus 299 ~~~~~~~~~~l~p~~yi~~~~~~~~~~~~C~~~~i~~~-----~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~~~~ 373 (395)
T 2qp8_A 299 EVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQS-----STGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDE 373 (395)
T ss_dssp SSTTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEE-----SSCEEECHHHHTTEEEEEETTTTEEEEEEETTCCCCS
T ss_pred CCCCceEEEEECHHHhEeecccCCCCCceEEEEEecCC-----CCcEEEChHHhCCeeEEEECCCCEEEEEeccCCCCCC
Confidence 5222234799999999997542 358964 3321 3579999999999999999999999999999997554
Q ss_pred C
Q 008104 569 F 569 (577)
Q Consensus 569 ~ 569 (577)
.
T Consensus 374 ~ 374 (395)
T 2qp8_A 374 F 374 (395)
T ss_dssp S
T ss_pred C
Confidence 3
No 33
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=100.00 E-value=4.4e-50 Score=420.47 Aligned_cols=304 Identities=22% Similarity=0.318 Sum_probs=243.3
Q ss_pred EeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhcCCC
Q 008104 189 IFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHK 268 (577)
Q Consensus 189 ~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~~~~ 268 (577)
.+||... +..|+++|.||||+|++.|+|||||+++||+|. +.|+|++|++ .
T Consensus 4 ~~~l~n~---~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~-----------~~y~~s~Ss~----------~----- 54 (340)
T 1wkr_A 4 SVPATNQ---LVDYVVNVGVGSPATTYSLLVDTGSSNTWLGAD-----------KSYVKTSTSS----------A----- 54 (340)
T ss_dssp EEEEEEC---SSCEEEEEEETTTTEEEEEEEETTCCCCEECSS-----------SCCCCCTTCE----------E-----
T ss_pred cEeeecc---CcEEEEEEEECCCCcEEEEEEeCCChhheecCC-----------CccCCcCCcc----------c-----
Confidence 4677642 459999999999999999999999999999764 4699988763 1
Q ss_pred CCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCC-----
Q 008104 269 PGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV----- 343 (577)
Q Consensus 269 ~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~----- 343 (577)
..|.|.+.|++| .+.|.+++|+|+| |+++++++.|||++...+ + ..++||||||+..+
T Consensus 55 -------~~~~~~i~Yg~G-s~~G~~~~Dtv~~----g~~~v~~~~fg~~~~~~~-~----~~~~GilGLg~~~~s~~~~ 117 (340)
T 1wkr_A 55 -------TSDKVSVTYGSG-SFSGTEYTDTVTL----GSLTIPKQSIGVASRDSG-F----DGVDGILGVGPVDLTVGTL 117 (340)
T ss_dssp -------EEEEEEEECSSC-EEEEEEEEEEEEE----TTEEEEEEEEEEEEEEES-C----TTCSEEEECSCGGGGTTSE
T ss_pred -------cCceEEEEECCc-EEEEEEEEEEEEE----CCEEEcceEEEEEEccCC-C----cCCCcEEECCccccccccc
Confidence 158999999999 5999999999999 889999999999998755 2 36899999998654
Q ss_pred ---------CChHHHHhcCCc-cceEEEEeecC---CCCCeeEEeCC--CCCCCCCceEEeCccCCC-CcceEEEEeEEe
Q 008104 344 ---------SLPSQLASQGII-KNVVGHCLTTN---AGGGGYMFLGH--DLVPSWGMAWVPMLDSPF-MELYHTEILKIN 407 (577)
Q Consensus 344 ---------S~~~qL~~~g~i-~~~FSl~L~~~---~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~-~~~w~V~l~~I~ 407 (577)
+++++|+++|+| +++||+||.+. ...+|.|+||+ ..++.|++.|+|+..... ..+|.|. ++|.
T Consensus 118 ~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~w~v~-~~i~ 196 (340)
T 1wkr_A 118 SPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGIN-QSIR 196 (340)
T ss_dssp ESCTTCCCCCHHHHHHHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCGGGCSSCCEEEECCSSTTGGGSSEEE-EEEE
T ss_pred cccccccCCCHHHHHHHcCCCCCCEEEEEecCCCCCCCCCcEEEEcccChhhcccceEEEECccCCCCcceEEEE-eeEE
Confidence 468999999999 89999999863 24589999995 567889999999987521 3799999 9999
Q ss_pred eCC-cceecCcccCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccc
Q 008104 408 YGS-SPLNLGARNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFF 485 (577)
Q Consensus 408 vgg-~~l~i~~~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ 485 (577)
|++ +.+.. ...+||||||++++||+++|++|.+++ +.+... ...+.++ |... ..+
T Consensus 197 v~~~~~l~~------~~~aiiDSGTt~~~lP~~~~~~l~~~~~a~~~~~-----~g~~~~~-C~~~-----------~~~ 253 (340)
T 1wkr_A 197 YGSSTSILS------STAGIVDTGTTLTLIASDAFAKYKKATGAVADNN-----TGLLRLT-TAQY-----------ANL 253 (340)
T ss_dssp ETTTEEEEE------EEEEEECTTBCSEEECHHHHHHHHHHHTCEECTT-----TSSEEEC-HHHH-----------HTC
T ss_pred ECCCeEccC------CCeEEEeCCcccccCCHHHHHHHHHhhCCEEcCC-----CCeEEee-cccc-----------ccC
Confidence 998 76642 358999999999999999999998888 554311 0111234 7532 247
Q ss_pred eeEEEEEcccCceeeEEEEECCCccEEEeC-------CCceEE-EEEcCCCC-CCCCceEeChhhhccEEEEEECCCCEE
Q 008104 486 KTLTLHFGSKWQIVSTKFHISPEGYLVISK-------KGNICL-GILDGSEV-HNGSTIILGDISLRGQLVVYDNVNKRI 556 (577)
Q Consensus 486 P~l~f~F~gg~~~~~~~~~l~p~~yl~~~~-------~g~~Cl-~i~~~~~~-~~~~~~ILG~~FLr~~yvVFD~~~~rI 556 (577)
|+|+|+|+| ..|.|+|++|+++.. ....|+ ++...... +.+..||||++|||++|+|||++++||
T Consensus 254 p~i~f~f~g------~~~~i~~~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~i 327 (340)
T 1wkr_A 254 QSLFFTIGG------QTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRL 327 (340)
T ss_dssp CCEEEEETT------EEEEECTGGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEE
T ss_pred CcEEEEECC------EEEEEcHHHhccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEEEEeCCCCeE
Confidence 999999987 899999999998642 124674 45442211 123469999999999999999999999
Q ss_pred EEEecCCCCCCC
Q 008104 557 GWAKSHCMNPGR 568 (577)
Q Consensus 557 GfA~~~C~~~~~ 568 (577)
|||+++|+..+.
T Consensus 328 gfA~~~~~~~~~ 339 (340)
T 1wkr_A 328 GLATTSFTTATS 339 (340)
T ss_dssp EEEECTTTTCCC
T ss_pred EEEecCCCCCCC
Confidence 999999987653
No 34
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=100.00 E-value=8.4e-41 Score=333.31 Aligned_cols=225 Identities=22% Similarity=0.313 Sum_probs=190.4
Q ss_pred EeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCC-CCCCCCcCCCCCCccccCCCcchhhhhcCC
Q 008104 189 IFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSC-AKGANPLYKPRMGNILPYKDSLCMEIQRNH 267 (577)
Q Consensus 189 ~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C-~~~~~~~ydps~Sstv~c~~~~c~~~~~~~ 267 (577)
.+||.. +.++.|+++|.||||||++.|+|||||+++||+|. .|..| .|..++.|+|++|+| +...
T Consensus 4 ~~~l~n--~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~-~C~~~~~C~~~~~y~~~~SsT----------~~~~- 69 (239)
T 1b5f_A 4 VVALTN--DRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSS-KCINSKACRAHSMYESSDSST----------YKEN- 69 (239)
T ss_dssp EEEEEE--ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBT-TCCSCHHHHTSCCBCGGGCTT----------CEEE-
T ss_pred eeeeee--cCCCEEEEEEEECCCCeEEEEEEeCCCcceEEEcC-CCCCCcccCCCCCCCCccCCC----------eeeC-
Confidence 467763 46789999999999999999999999999999998 89632 234578999999985 2222
Q ss_pred CCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCCCC--C
Q 008104 268 KPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVS--L 345 (577)
Q Consensus 268 ~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~S--~ 345 (577)
.|.|.+.|++| .+.|.+++|+|+| |+..++++.|||+....+..+. ...++||||||+..++ +
T Consensus 70 ---------~~~~~i~Yg~G-s~~G~~~~D~v~~----g~~~v~~~~fg~~~~~~~~~f~-~~~~~GilGLg~~~~s~p~ 134 (239)
T 1b5f_A 70 ---------GTFGAIIYGTG-SITGFFSQDSVTI----GDLVVKEQDFIEATDEADNVFL-HRLFDGILGLSFQTISVPV 134 (239)
T ss_dssp ---------EEEEEEECSSC-EEEEEEEEEEEEE----TTEEEEEEEEEEEEEECHHHHT-TCSCCEEEECSCCSSSCCH
T ss_pred ---------CcEEEEEECCC-cEEEEEEEEEEEE----CCcEEccEEEEEEEeccCcccc-ccCcceEEecCccccccHH
Confidence 57899999999 5899999999999 8889999999999987553222 4678999999998876 5
Q ss_pred hHHHHhcCCc-cceEEEEeecC--CCCCeeEEeCC--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCcccC
Q 008104 346 PSQLASQGII-KNVVGHCLTTN--AGGGGYMFLGH--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNS 420 (577)
Q Consensus 346 ~~qL~~~g~i-~~~FSl~L~~~--~~~~G~l~fGd--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~~ 420 (577)
+.+|+++|+| .++||+||.+. ...+|.|+||+ ..++.|++.|+|+... .+|.|.|++|.|+++.+.+. .
T Consensus 135 ~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~v~l~~i~v~~~~~~~~---~ 208 (239)
T 1b5f_A 135 WYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVTYQ---YYWQFGIGDVLIGDKSTGFC---A 208 (239)
T ss_dssp HHHHHHTTCCSSSEEEEEECCSCSSSCCEEEEETSCCGGGEEEEEEEEEEEEE---TTEEEEECCEEETTEECCTT---T
T ss_pred HHHHHHCCCCCCCEEEEEEeCCCCCCCCeEEEECCcChhhccCceEEEEcccC---CeEEEEeeEEEECCEEeccc---C
Confidence 6889999999 89999999975 35689999995 5677899999999865 59999999999999877653 2
Q ss_pred CCccEEEecccccccccHHHHHHHHHHH
Q 008104 421 QVGWALFDTGSSYTYFTKQAYSELIASL 448 (577)
Q Consensus 421 ~~~~aIiDSGTt~i~lP~~~~~~l~~~i 448 (577)
....+||||||++++||++++++|+++|
T Consensus 209 ~~~~aiiDTGTt~~~lP~~~~~~i~~~i 236 (239)
T 1b5f_A 209 PGCQAFADSGTSLLSGPTAIVTQINHAI 236 (239)
T ss_dssp TCEEEEECTTCSSEEECHHHHHHHHHHT
T ss_pred CCCEEEEecCcchhhCCHHHHHHHHHHh
Confidence 4578999999999999999999999988
No 35
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=100.00 E-value=4e-36 Score=299.48 Aligned_cols=225 Identities=23% Similarity=0.398 Sum_probs=181.6
Q ss_pred CCccccceEEEEEEccCccccccCCccceEEecCCCCC------CChHHHHhcCCc-cceEEEEeecCCCC--CeeEEeC
Q 008104 306 GSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKV------SLPSQLASQGII-KNVVGHCLTTNAGG--GGYMFLG 376 (577)
Q Consensus 306 g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~------S~~~qL~~~g~i-~~~FSl~L~~~~~~--~G~l~fG 376 (577)
|++++++|.|||++.+++.++. ...+|||||||++.+ +++++|+++|.| +++||+||.+.... +|.|+||
T Consensus 1 gg~~v~~~~Fg~~~~~~~~~f~-~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fG 79 (241)
T 1lya_B 1 GGVKVERQVFGEATKQPGITFI-AAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLG 79 (241)
T ss_dssp CCEEEEEEEEEEEEECCSSTTT-SCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTCSSCEEEEET
T ss_pred CCeEECCeEEEEEEEccCCccc-cccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeCCCCCCCCcEEEEC
Confidence 4678899999999998765433 467899999999754 478999999999 99999999986444 8999999
Q ss_pred C--CCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecCcccCCCccEEEecccccccccHHHHHHHHHHH-HhhcC
Q 008104 377 H--DLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSS 453 (577)
Q Consensus 377 d--~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~ 453 (577)
+ ..++.|+++|+|+... .+|.|.+++|+|+++.+.. .....+||||||+++++|++++++|++++ +....
T Consensus 80 g~d~~~~~g~l~~~p~~~~---~~~~v~l~~i~v~~~~~~~----~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~ 152 (241)
T 1lya_B 80 GTDSKYYKGSLSYLNVTRK---AYWQVHLDQVEVASGLTLC----KEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLI 152 (241)
T ss_dssp SCCGGGEEEEEEEEECSSB---TTBEEEEEEEEETTSCEES----TTCEEEEECTTCSSEEECHHHHHHHHHHHTCEEEE
T ss_pred CcCHHHcCCceEEEECccc---cEEEEEEeEEEECCeeEec----cCCCEEEEECCCccccCCHHHHHHHHHHhCCeecc
Confidence 5 5678899999999864 6999999999999987531 34578999999999999999999999999 54321
Q ss_pred CCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCceeeEEEEECCCccEEEeCC--CceEEE-EEcCCCC-
Q 008104 454 DGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKK--GNICLG-ILDGSEV- 529 (577)
Q Consensus 454 ~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~~l~p~~yl~~~~~--g~~Cl~-i~~~~~~- 529 (577)
. ..+.++ |+.. ..+|+|+|+|+| ++|+|++++|+++... +..|+. +......
T Consensus 153 ~------g~~~~~-C~~~-----------~~~p~i~f~f~g------~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~ 208 (241)
T 1lya_B 153 Q------GEYMIP-CEKV-----------STLPAITLKLGG------KGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPP 208 (241)
T ss_dssp T------TEEEEE-GGGG-----------GGSCCEEEEETT------EEEEECTTTSEEEETTTTSSEEEESEEECCCCT
T ss_pred C------CcEEEE-CCCC-----------ccCCeEEEEECC------EEEEECHHHhEEEccCCCCCeeEEEEEecccCC
Confidence 1 112234 8643 247999999976 8999999999998643 468975 5543211
Q ss_pred CCCCceEeChhhhccEEEEEECCCCEEEEEecC
Q 008104 530 HNGSTIILGDISLRGQLVVYDNVNKRIGWAKSH 562 (577)
Q Consensus 530 ~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~ 562 (577)
...+.||||++|||++|+|||++++|||||+++
T Consensus 209 ~~~~~~ilG~~fl~~~y~vfD~~~~~igfA~~~ 241 (241)
T 1lya_B 209 PSGPLWILGDVFIGRYYTVFDRDNNRVGFAEAA 241 (241)
T ss_dssp TTCCCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CCCCeEEechHHhcceEEEEECCCCEEEEEEcC
Confidence 135689999999999999999999999999874
No 36
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=99.80 E-value=6.4e-20 Score=156.56 Aligned_cols=89 Identities=25% Similarity=0.498 Sum_probs=75.6
Q ss_pred eEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCC----CCCCCCCCcCCCCCCccccCCCcchhhh
Q 008104 188 SIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCS----SCAKGANPLYKPRMGNILPYKDSLCMEI 263 (577)
Q Consensus 188 ~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~----~C~~~~~~~ydps~Sstv~c~~~~c~~~ 263 (577)
+.+||.. +.++.|+++|.||||||+|.|+|||||+++||+|. +|. .|. .++.|||++|+| +
T Consensus 3 ~~~~l~n--~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~-~C~~~~~~C~--~~~~y~p~~SsT----------~ 67 (97)
T 1lya_A 3 IPEVLKN--YMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSI-HCKLLDIACW--IHHKYNSDKSST----------Y 67 (97)
T ss_dssp EEEEEEE--ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBT-TCCTTCHHHH--TSCCBCGGGCTT----------C
T ss_pred ceEeeEE--CCCCeEEEEEEECCCCeEEEEEEeCCCCceEEeEc-CccCcccccC--CCCCCCchhCCC----------c
Confidence 3567753 46779999999999999999999999999999998 896 454 578999999985 3
Q ss_pred hcCCCCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEe
Q 008104 264 QRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLT 302 (577)
Q Consensus 264 ~~~~~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~ 302 (577)
... .|.|.+.|++| .+.|.+++|+|+|+
T Consensus 68 ~~~----------~~~~~i~Yg~G-s~~G~~~~Dtv~i~ 95 (97)
T 1lya_A 68 VKN----------GTSFDIHYGSG-SLSGYLSQDTVSVP 95 (97)
T ss_dssp EEE----------EEEEEEECSSC-EEEEEEEEEEEEES
T ss_pred eeC----------CCcEEEEECCc-EEEEEEEEEEEEEC
Confidence 222 58999999999 49999999999993
No 37
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=99.54 E-value=1e-14 Score=121.72 Aligned_cols=73 Identities=26% Similarity=0.470 Sum_probs=59.4
Q ss_pred cceeEEEEEcccCceeeEEEEECCCccEEEeCC--CceEEE-EEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEe
Q 008104 484 FFKTLTLHFGSKWQIVSTKFHISPEGYLVISKK--GNICLG-ILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAK 560 (577)
Q Consensus 484 ~~P~l~f~F~gg~~~~~~~~~l~p~~yl~~~~~--g~~Cl~-i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~ 560 (577)
.+|+|+|+|+| ++++|+|++|+++... ...|++ +......+.++.||||++|||++|+|||.+++|||||+
T Consensus 12 ~~P~i~f~~gg------~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~riGfA~ 85 (87)
T 1b5f_B 12 SMPNVSFTIGG------KKFGLTPEQYILKVGKGEATQCISGFTAMDATLLGPLWILGDVFMRPYHTVFDYGNLLVGFAE 85 (87)
T ss_dssp GCCCEEEEETT------EEEEECHHHHEEEESCTTTCEEEESEEECCCBSSSBEEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred cCCcEEEEECC------EEEEECHHHhEEEccCCCCCEEEEEEEECCCCCCCCeEEechHHhccEEEEEECCCCEEEEEE
Confidence 47999999987 8999999999998643 368975 44432112356899999999999999999999999998
Q ss_pred cC
Q 008104 561 SH 562 (577)
Q Consensus 561 ~~ 562 (577)
++
T Consensus 86 ~~ 87 (87)
T 1b5f_B 86 AA 87 (87)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 38
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=91.53 E-value=0.37 Score=43.35 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=29.2
Q ss_pred ceEeChhhhccEEEEEECCCCEEEEEecCCCCCCCCcCCCCCC
Q 008104 534 TIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKSLPFLE 576 (577)
Q Consensus 534 ~~ILG~~FLr~~yvVFD~~~~rIGfA~~~C~~~~~~~~~p~~~ 576 (577)
..|||..||+.+-.+.|+.++++-|.+. ...+||++
T Consensus 108 d~LLGmD~L~~~~~~ID~~~~~L~l~~~-------~~~~pfl~ 143 (148)
T 3s8i_A 108 DMLLGLDMLRRHQCSIDLKKNVLVIGTT-------GTQTYFLP 143 (148)
T ss_dssp SEEECHHHHHHTTCEEETTTTEEECTTT-------CCEEECCC
T ss_pred CeeccHHHHHhCCEEEEcCCCEEEEccC-------CeEEeecC
Confidence 4799999999999999999999998442 25567763
No 39
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=82.12 E-value=1.6 Score=39.07 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=25.8
Q ss_pred eEEEEEEecCCCceEEEEEECCCCceeEecC
Q 008104 201 LYFTYMIVGNPPRPYYLDMDTGSDLTWIQCD 231 (577)
Q Consensus 201 ~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~ 231 (577)
.|++++.|. .++++++||||++.+.+...
T Consensus 24 ~l~v~~~In--g~~v~~LVDTGAs~s~Is~~ 52 (148)
T 3s8i_A 24 MLYINCKVN--GHPLKAFVDSGAQMTIMSQA 52 (148)
T ss_dssp CCEEEEEET--TEEEEEEECTTCSSCEEEHH
T ss_pred EEEEEEEEC--CEEEEEEEeCCCCcEeeCHH
Confidence 789999997 58999999999999999754
No 40
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=80.59 E-value=4 Score=36.01 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=24.1
Q ss_pred ceEeChhhhccEEEEEECCCCEEEEE
Q 008104 534 TIILGDISLRGQLVVYDNVNKRIGWA 559 (577)
Q Consensus 534 ~~ILG~~FLr~~yvVFD~~~~rIGfA 559 (577)
..|||..||+++-+++|+.+++|-|.
T Consensus 109 d~iLG~d~L~~~~~~ID~~~~~l~l~ 134 (148)
T 2i1a_A 109 DVLIGLDMLKRHLACVDLKENVLRIA 134 (148)
T ss_dssp SEEECHHHHHHTTCEEETTTTEEEET
T ss_pred CeEecHHHHhhCCEEEECCCCEEEEc
Confidence 37999999999999999999999995
No 41
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=71.76 E-value=3.6 Score=34.51 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=23.3
Q ss_pred EEEEEEecCCCceEEEEEECCCCceeEec
Q 008104 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQC 230 (577)
Q Consensus 202 Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~ 230 (577)
-++.|.|| +|.+.+++|||.++|-+..
T Consensus 9 P~v~v~I~--Gq~~e~LLDTGAD~TVl~~ 35 (104)
T 1fmb_A 9 PTTIVLIN--DTPLNVLLDTGADTSVLTT 35 (104)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEEEH
T ss_pred CEEEEEEC--CEEEEEEeccCCCcEEEcc
Confidence 35678898 5999999999999999973
No 42
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=70.66 E-value=4 Score=33.93 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=22.6
Q ss_pred EEEEEecCCCceEEEEEECCCCceeEec
Q 008104 203 FTYMIVGNPPRPYYLDMDTGSDLTWIQC 230 (577)
Q Consensus 203 ~~~I~IGTPpQ~~~v~vDTGSs~tWV~~ 230 (577)
+++|.|| .|.+.+++|||.++|-+..
T Consensus 10 ~vtvkI~--Gq~~eaLLDTGAD~TVl~~ 35 (99)
T 2hs1_A 10 LVTIKIG--GQLKEALLDTGADDTIIEE 35 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSEEESC
T ss_pred EEEEEEC--CEEEEEEeccCCCcEEEec
Confidence 4678888 5999999999999999964
No 43
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=70.10 E-value=3.7 Score=36.21 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=26.7
Q ss_pred CceEEEEEEecCCCceEEEEEECCCCceeEecC
Q 008104 199 DGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCD 231 (577)
Q Consensus 199 ~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~ 231 (577)
.+.+++++.|+ ++++.++||||++.+.+...
T Consensus 24 ~~~~~v~v~In--G~~~~~LvDTGAs~s~is~~ 54 (148)
T 2i1a_A 24 VPMLYINIEIN--NYPVKAFVDTGAQTTIMSTR 54 (148)
T ss_dssp CCCCEEEEEET--TEEEEEEECTTCSSCEEEHH
T ss_pred cceEEEEEEEC--CEEEEEEEECCCCccccCHH
Confidence 45789999998 58999999999999988643
No 44
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=63.85 E-value=6.3 Score=32.74 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=22.9
Q ss_pred EEEEEecCCCceEEEEEECCCCceeEecC
Q 008104 203 FTYMIVGNPPRPYYLDMDTGSDLTWIQCD 231 (577)
Q Consensus 203 ~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~ 231 (577)
+++|.|| +|.+.+++|||.++|-+...
T Consensus 10 ~vti~I~--Gq~~e~LLDTGAD~TVl~~~ 36 (99)
T 3ec0_A 10 VVTAYIE--GQPVEVLLDTGADDSIVAGI 36 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEESSC
T ss_pred eEEEEEC--CEEEEEEEecCCCceEEcCc
Confidence 5668888 69999999999999999643
No 45
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=63.35 E-value=6.4 Score=33.48 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=23.8
Q ss_pred EEEEEec---CCCceEEEEEECCCCceeEecC
Q 008104 203 FTYMIVG---NPPRPYYLDMDTGSDLTWIQCD 231 (577)
Q Consensus 203 ~~~I~IG---TPpQ~~~v~vDTGSs~tWV~~~ 231 (577)
.++|.|| +|+|.+..++|||.++|-+...
T Consensus 12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~~~ 43 (116)
T 3liy_A 12 VIKAQVDTQTSHPKTIEALLDTGADMTVIPIA 43 (116)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTBSSCEEEGG
T ss_pred eEEEEEccccCCCeEeEEEeccCCCccEEecc
Confidence 3455555 7899999999999999999754
No 46
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=55.26 E-value=10 Score=32.40 Aligned_cols=24 Identities=29% Similarity=0.456 Sum_probs=21.4
Q ss_pred EEecCCCceEEEEEECCCCceeEecC
Q 008104 206 MIVGNPPRPYYLDMDTGSDLTWIQCD 231 (577)
Q Consensus 206 I~IGTPpQ~~~v~vDTGSs~tWV~~~ 231 (577)
|.|| +|.+.+++|||.++|-+...
T Consensus 18 ikI~--Gq~~eaLLDTGAD~TVi~~~ 41 (116)
T 2hah_A 18 IFVN--GYPIKFLLDTGADITVLNRR 41 (116)
T ss_dssp EEET--TEEEEEEECTTCSSCEEEGG
T ss_pred EEEC--CEEEEEEecCCCCcEEEccc
Confidence 8888 69999999999999999753
No 47
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=48.02 E-value=16 Score=31.04 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=22.8
Q ss_pred EEEEEecCCCceEEEEEECCCCceeEecC
Q 008104 203 FTYMIVGNPPRPYYLDMDTGSDLTWIQCD 231 (577)
Q Consensus 203 ~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~ 231 (577)
.+.|.|| +|.+..++|||.+++-+...
T Consensus 11 ~vti~I~--Gq~~eaLLDTGADdTVi~~~ 37 (114)
T 3sqf_A 11 SLTLWLD--DKMFTGLINTGADVTIIKLE 37 (114)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEEEGG
T ss_pred eEEEEEC--CEEEEEEEccCCCceEEecc
Confidence 4567887 59999999999999999754
No 48
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=38.21 E-value=27 Score=30.46 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=23.4
Q ss_pred eEEEEEEecCCCceEEEEEECCCCceeEecC
Q 008104 201 LYFTYMIVGNPPRPYYLDMDTGSDLTWIQCD 231 (577)
Q Consensus 201 ~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~ 231 (577)
.-++++.|+ +|.+.+++|||.+++-+...
T Consensus 22 RP~v~i~I~--G~~~~~LlDTGAd~tVl~~~ 50 (132)
T 3slz_A 22 EPRITLKVG--GQPVTFLVDTGAQHSVLTQN 50 (132)
T ss_dssp SSEEEEEET--TEEEEEEECTTCSSCEECSC
T ss_pred CCEEEEEEC--CEEEEEEEeCCCCeEEEccc
Confidence 345667887 58999999999999999643
No 49
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=33.46 E-value=33 Score=32.19 Aligned_cols=27 Identities=26% Similarity=0.192 Sum_probs=23.2
Q ss_pred EEEEEEecCCCceEEEEEECCCCceeEec
Q 008104 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQC 230 (577)
Q Consensus 202 Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~ 230 (577)
-.++|.|| +|.+..++|||.+++-+..
T Consensus 9 P~vtv~I~--Gq~~e~LLDTGAD~TVl~~ 35 (203)
T 3ka2_A 9 PLVTIRIG--GQLKEALLDTGADDTVIEE 35 (203)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEECS
T ss_pred CeEEEEEC--CEEEEEEEecCCCceEEec
Confidence 36778888 5999999999999999963
No 50
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=29.80 E-value=38 Score=29.15 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=17.3
Q ss_pred CceEEEEEECCCCceeEecC
Q 008104 212 PRPYYLDMDTGSDLTWIQCD 231 (577)
Q Consensus 212 pQ~~~v~vDTGSs~tWV~~~ 231 (577)
+|.+..++|||.+++-+...
T Consensus 29 gq~~eaLLDTGAD~TVl~~~ 48 (124)
T 2rsp_A 29 SVYITALLDSGADITIISEE 48 (124)
T ss_dssp EEEEEEEECTTCSSCEEETT
T ss_pred CEEEEEEecCCCCcEEEecc
Confidence 47789999999999999754
Done!