Query 008105
Match_columns 577
No_of_seqs 839 out of 3228
Neff 10.8
Searched_HMMs 46136
Date Thu Mar 28 19:31:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008105.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008105hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.6E-68 3.4E-73 572.2 60.4 458 114-573 434-916 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.6E-67 3.5E-72 564.5 62.2 459 113-575 366-850 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 6.6E-66 1.4E-70 562.9 49.7 506 38-569 171-689 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 2.4E-65 5.2E-70 558.5 47.3 441 112-573 217-658 (857)
5 PLN03081 pentatricopeptide (PP 100.0 4.4E-63 9.6E-68 528.2 51.0 449 106-571 111-562 (697)
6 PLN03081 pentatricopeptide (PP 100.0 7.8E-63 1.7E-67 526.3 50.8 442 113-569 83-526 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 7.5E-29 1.6E-33 276.9 59.5 436 115-564 463-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2E-27 4.3E-32 265.4 60.7 440 116-568 362-801 (899)
9 PRK11447 cellulose synthase su 99.9 2.1E-20 4.4E-25 210.2 55.3 430 123-565 275-739 (1157)
10 PRK11447 cellulose synthase su 99.9 6E-20 1.3E-24 206.4 58.4 439 121-569 116-703 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 8.9E-22 1.9E-26 188.2 36.1 434 120-571 51-490 (966)
12 PRK11788 tetratricopeptide rep 99.9 1.1E-20 2.3E-25 189.7 36.1 307 124-468 42-354 (389)
13 PRK11788 tetratricopeptide rep 99.9 1.5E-20 3.2E-25 188.6 36.5 298 269-573 47-354 (389)
14 TIGR00990 3a0801s09 mitochondr 99.9 1.9E-18 4.1E-23 182.5 53.7 432 119-567 129-572 (615)
15 KOG4626 O-linked N-acetylgluco 99.9 5.6E-20 1.2E-24 176.0 36.6 408 125-549 90-502 (966)
16 TIGR00990 3a0801s09 mitochondr 99.9 2.4E-18 5.3E-23 181.7 52.8 403 113-531 156-571 (615)
17 PRK15174 Vi polysaccharide exp 99.9 4.7E-18 1E-22 178.9 47.8 332 121-461 46-381 (656)
18 PRK15174 Vi polysaccharide exp 99.9 5.7E-18 1.2E-22 178.3 47.7 366 154-529 44-418 (656)
19 PRK10049 pgaA outer membrane p 99.9 1.7E-17 3.6E-22 178.6 52.2 163 117-284 15-177 (765)
20 PRK10049 pgaA outer membrane p 99.9 1.8E-17 3.9E-22 178.3 48.1 411 149-570 12-460 (765)
21 PRK09782 bacteriophage N4 rece 99.9 3.8E-16 8.2E-21 168.3 54.9 190 373-569 520-709 (987)
22 PRK14574 hmsH outer membrane p 99.9 3.7E-16 7.9E-21 165.0 53.5 440 122-571 39-518 (822)
23 KOG2002 TPR-containing nuclear 99.9 3.2E-17 6.9E-22 165.5 42.7 450 114-570 267-749 (1018)
24 PRK09782 bacteriophage N4 rece 99.8 2.5E-15 5.4E-20 162.1 55.8 429 116-569 77-675 (987)
25 KOG4422 Uncharacterized conser 99.8 4.4E-15 9.5E-20 136.9 42.4 428 117-567 116-591 (625)
26 KOG2002 TPR-containing nuclear 99.8 1.3E-15 2.9E-20 154.0 41.9 446 119-572 309-804 (1018)
27 PRK14574 hmsH outer membrane p 99.8 3.1E-14 6.7E-19 150.6 50.4 414 122-545 73-525 (822)
28 KOG2003 TPR repeat-containing 99.8 2.5E-15 5.5E-20 139.3 31.1 426 118-552 202-709 (840)
29 KOG2076 RNA polymerase III tra 99.8 6.7E-13 1.4E-17 133.9 48.3 449 114-566 136-695 (895)
30 KOG4422 Uncharacterized conser 99.7 1.7E-13 3.7E-18 126.6 39.0 238 151-392 206-463 (625)
31 KOG0495 HAT repeat protein [RN 99.7 3.3E-12 7.1E-17 124.2 47.3 435 115-568 378-882 (913)
32 KOG1915 Cell cycle control pro 99.7 7.7E-12 1.7E-16 117.3 46.2 440 116-567 72-537 (677)
33 KOG1915 Cell cycle control pro 99.7 1.8E-11 4E-16 114.7 46.8 438 114-565 104-584 (677)
34 KOG0495 HAT repeat protein [RN 99.7 1.7E-11 3.6E-16 119.4 48.0 387 148-545 475-893 (913)
35 KOG2076 RNA polymerase III tra 99.7 4E-12 8.6E-17 128.4 41.4 396 154-564 141-553 (895)
36 PRK10747 putative protoheme IX 99.6 2.7E-12 5.9E-17 127.7 36.8 284 270-566 97-390 (398)
37 KOG1155 Anaphase-promoting com 99.6 1.8E-11 3.8E-16 114.7 38.8 365 149-530 161-535 (559)
38 PRK10747 putative protoheme IX 99.6 3.4E-12 7.3E-17 127.0 35.6 282 200-494 97-388 (398)
39 KOG2003 TPR repeat-containing 99.6 8.3E-13 1.8E-17 122.8 28.4 402 157-568 206-691 (840)
40 KOG1155 Anaphase-promoting com 99.6 7.8E-11 1.7E-15 110.5 40.7 365 184-565 161-535 (559)
41 TIGR00540 hemY_coli hemY prote 99.6 3.4E-12 7.3E-17 127.7 34.7 291 268-565 95-398 (409)
42 TIGR00540 hemY_coli hemY prote 99.6 5.4E-12 1.2E-16 126.2 35.4 132 326-458 262-396 (409)
43 PF13429 TPR_15: Tetratricopep 99.6 8.5E-15 1.8E-19 139.1 12.4 261 297-565 13-276 (280)
44 PF13429 TPR_15: Tetratricopep 99.6 1E-14 2.2E-19 138.7 12.5 259 122-387 13-273 (280)
45 KOG0547 Translocase of outer m 99.6 4E-11 8.7E-16 113.0 33.2 393 119-529 117-564 (606)
46 KOG1126 DNA-binding cell divis 99.5 2.4E-12 5.1E-17 126.1 24.5 289 272-572 334-626 (638)
47 COG2956 Predicted N-acetylgluc 99.5 4.4E-11 9.6E-16 107.1 29.6 272 130-408 48-326 (389)
48 COG3071 HemY Uncharacterized e 99.5 1.6E-10 3.5E-15 106.8 34.2 290 270-570 97-394 (400)
49 COG3071 HemY Uncharacterized e 99.5 2.2E-10 4.7E-15 106.0 34.8 286 200-495 97-389 (400)
50 KOG4318 Bicoid mRNA stability 99.5 3.2E-11 6.9E-16 121.4 31.6 441 108-570 16-598 (1088)
51 KOG1126 DNA-binding cell divis 99.5 2.9E-11 6.4E-16 118.6 27.9 285 236-531 333-620 (638)
52 COG2956 Predicted N-acetylgluc 99.5 1.3E-10 2.8E-15 104.2 29.4 289 200-495 48-346 (389)
53 KOG3785 Uncharacterized conser 99.5 6.5E-09 1.4E-13 94.4 38.1 421 124-572 29-496 (557)
54 KOG1173 Anaphase-promoting com 99.4 2.1E-09 4.6E-14 103.6 34.9 60 115-176 47-106 (611)
55 KOG4318 Bicoid mRNA stability 99.4 2E-10 4.4E-15 115.7 28.4 248 139-410 12-284 (1088)
56 KOG0547 Translocase of outer m 99.4 7.4E-10 1.6E-14 104.7 29.2 385 157-565 120-565 (606)
57 TIGR02521 type_IV_pilW type IV 99.4 3.7E-10 7.9E-15 104.3 27.4 202 361-566 30-232 (234)
58 KOG2047 mRNA splicing factor [ 99.4 2E-07 4.2E-12 91.5 45.7 435 117-564 102-613 (835)
59 KOG1156 N-terminal acetyltrans 99.4 7.7E-08 1.7E-12 94.6 42.9 430 118-568 9-470 (700)
60 KOG1156 N-terminal acetyltrans 99.4 6.3E-08 1.4E-12 95.2 41.9 427 123-563 47-508 (700)
61 TIGR02521 type_IV_pilW type IV 99.4 5.9E-10 1.3E-14 102.9 27.0 202 115-320 29-231 (234)
62 KOG1173 Anaphase-promoting com 99.4 6.1E-09 1.3E-13 100.5 33.0 288 254-549 241-534 (611)
63 KOG2376 Signal recognition par 99.4 1.1E-07 2.3E-12 92.6 41.0 412 122-563 17-517 (652)
64 PRK12370 invasion protein regu 99.4 7.9E-10 1.7E-14 115.1 28.8 182 203-390 320-501 (553)
65 PRK12370 invasion protein regu 99.3 2.6E-09 5.6E-14 111.2 31.5 268 185-462 254-536 (553)
66 KOG2047 mRNA splicing factor [ 99.3 4E-07 8.6E-12 89.5 42.6 407 153-572 103-584 (835)
67 KOG4162 Predicted calmodulin-b 99.3 1.3E-07 2.8E-12 94.9 39.2 412 148-568 319-785 (799)
68 KOG1129 TPR repeat-containing 99.3 7.9E-10 1.7E-14 99.2 20.7 235 330-570 226-462 (478)
69 KOG1840 Kinesin light chain [C 99.3 4.6E-09 9.9E-14 104.3 27.8 237 329-565 201-478 (508)
70 PF12569 NARP1: NMDA receptor- 99.3 4.4E-08 9.6E-13 98.7 33.6 128 366-495 198-333 (517)
71 PF13041 PPR_2: PPR repeat fam 99.3 1.8E-11 3.8E-16 81.7 6.3 50 115-164 1-50 (50)
72 KOG1129 TPR repeat-containing 99.2 1.4E-09 3E-14 97.7 20.0 230 295-530 226-457 (478)
73 PF12569 NARP1: NMDA receptor- 99.2 2.6E-08 5.7E-13 100.3 31.4 292 124-425 11-333 (517)
74 PF13041 PPR_2: PPR repeat fam 99.2 2.8E-11 6E-16 80.7 6.6 49 430-478 1-49 (50)
75 KOG1840 Kinesin light chain [C 99.2 9.4E-09 2E-13 102.1 26.7 244 222-494 199-477 (508)
76 KOG3785 Uncharacterized conser 99.2 4.4E-07 9.5E-12 82.8 34.6 382 159-560 29-451 (557)
77 KOG1174 Anaphase-promoting com 99.2 1.1E-06 2.4E-11 82.0 37.2 266 254-529 229-498 (564)
78 KOG2376 Signal recognition par 99.2 6.2E-06 1.3E-10 80.7 40.9 393 155-569 15-490 (652)
79 KOG1174 Anaphase-promoting com 99.1 6.4E-06 1.4E-10 77.0 38.4 291 270-570 209-504 (564)
80 PRK11189 lipoprotein NlpI; Pro 99.1 9.6E-08 2.1E-12 91.0 27.8 118 131-250 40-160 (296)
81 PRK11189 lipoprotein NlpI; Pro 99.1 1E-07 2.2E-12 90.9 27.3 226 166-401 40-274 (296)
82 COG3063 PilF Tfp pilus assembl 99.1 1.4E-07 3E-12 81.3 24.7 194 158-355 41-235 (250)
83 KOG4340 Uncharacterized conser 99.1 8.1E-07 1.8E-11 79.3 29.4 291 119-421 12-334 (459)
84 COG3063 PilF Tfp pilus assembl 99.1 1.9E-07 4.1E-12 80.5 24.4 198 365-566 38-236 (250)
85 cd05804 StaR_like StaR_like; a 99.1 1.3E-06 2.9E-11 86.4 34.9 200 117-321 6-215 (355)
86 KOG4340 Uncharacterized conser 99.1 5.6E-07 1.2E-11 80.2 27.9 392 154-565 12-442 (459)
87 cd05804 StaR_like StaR_like; a 99.1 1.7E-06 3.8E-11 85.5 35.4 202 364-566 116-336 (355)
88 KOG4162 Predicted calmodulin-b 99.0 5E-06 1.1E-10 83.8 34.5 409 113-530 319-782 (799)
89 PRK04841 transcriptional regul 99.0 7.8E-06 1.7E-10 91.7 40.0 336 232-567 384-761 (903)
90 PRK04841 transcriptional regul 99.0 9.9E-06 2.1E-10 90.9 39.8 335 162-496 384-760 (903)
91 KOG0624 dsRNA-activated protei 98.9 8.1E-06 1.8E-10 74.5 30.1 198 221-426 37-252 (504)
92 KOG0548 Molecular co-chaperone 98.9 4.6E-06 9.9E-11 80.8 30.2 384 124-530 9-454 (539)
93 KOG0548 Molecular co-chaperone 98.9 8.4E-06 1.8E-10 79.0 31.5 364 114-505 33-462 (539)
94 KOG1914 mRNA cleavage and poly 98.9 7.2E-05 1.6E-09 72.7 42.7 424 114-565 17-500 (656)
95 KOG3616 Selective LIM binding 98.9 4.6E-06 1E-10 83.2 28.9 223 300-562 740-962 (1636)
96 PF04733 Coatomer_E: Coatomer 98.9 1.9E-07 4.2E-12 87.7 18.5 147 372-529 112-263 (290)
97 KOG3617 WD40 and TPR repeat-co 98.8 0.00021 4.5E-09 72.9 39.1 60 517-576 1306-1369(1416)
98 KOG1127 TPR repeat-containing 98.8 2.2E-05 4.7E-10 81.4 32.7 182 379-564 800-994 (1238)
99 PF04733 Coatomer_E: Coatomer 98.8 1.7E-07 3.8E-12 87.9 16.6 46 343-389 183-228 (290)
100 KOG0985 Vesicle coat protein c 98.8 0.00012 2.5E-09 76.2 37.2 234 258-528 1105-1338(1666)
101 KOG0985 Vesicle coat protein c 98.8 0.00014 3.1E-09 75.6 37.6 322 151-529 983-1306(1666)
102 KOG0624 dsRNA-activated protei 98.8 4.9E-05 1.1E-09 69.6 29.4 302 116-427 37-371 (504)
103 KOG3616 Selective LIM binding 98.7 7E-05 1.5E-09 75.1 31.9 290 122-456 620-932 (1636)
104 PLN02789 farnesyltranstransfer 98.7 2.5E-05 5.4E-10 74.5 27.4 216 118-339 38-267 (320)
105 PLN02789 farnesyltranstransfer 98.7 3.8E-05 8.2E-10 73.3 27.8 220 340-565 50-301 (320)
106 PF12854 PPR_1: PPR repeat 98.7 3.2E-08 7E-13 59.1 3.9 32 112-143 2-33 (34)
107 KOG1070 rRNA processing protei 98.7 2.6E-05 5.6E-10 83.6 27.5 227 293-523 1459-1692(1710)
108 KOG3617 WD40 and TPR repeat-co 98.6 0.0001 2.2E-09 75.0 29.9 351 151-563 725-1106(1416)
109 PF12854 PPR_1: PPR repeat 98.6 4.3E-08 9.4E-13 58.5 4.1 32 182-213 2-33 (34)
110 KOG1128 Uncharacterized conser 98.6 3E-06 6.5E-11 84.9 18.7 216 330-566 401-616 (777)
111 KOG1125 TPR repeat-containing 98.6 8.5E-06 1.8E-10 79.7 21.4 87 232-320 295-381 (579)
112 KOG1128 Uncharacterized conser 98.6 1.3E-05 2.8E-10 80.6 23.0 222 253-495 394-615 (777)
113 KOG1125 TPR repeat-containing 98.6 9.3E-06 2E-10 79.4 21.1 219 195-423 293-524 (579)
114 KOG1070 rRNA processing protei 98.6 3.5E-05 7.6E-10 82.6 26.9 228 326-559 1457-1693(1710)
115 KOG1127 TPR repeat-containing 98.6 0.00027 5.8E-09 73.7 32.1 418 132-558 473-944 (1238)
116 TIGR03302 OM_YfiO outer membra 98.6 1E-05 2.3E-10 74.7 20.7 188 114-321 30-232 (235)
117 TIGR03302 OM_YfiO outer membra 98.5 1.9E-05 4.2E-10 72.9 20.8 187 360-567 31-233 (235)
118 COG5010 TadD Flp pilus assembl 98.5 4.2E-05 9.1E-10 67.8 21.1 158 366-527 70-227 (257)
119 KOG2053 Mitochondrial inherita 98.5 0.0024 5.2E-08 66.3 45.4 225 126-357 18-256 (932)
120 PRK10370 formate-dependent nit 98.5 2.1E-05 4.6E-10 69.7 19.1 119 165-286 52-173 (198)
121 PRK10370 formate-dependent nit 98.5 5.4E-05 1.2E-09 67.2 20.7 156 369-540 23-181 (198)
122 KOG1914 mRNA cleavage and poly 98.4 0.0021 4.5E-08 62.9 37.7 394 149-572 17-470 (656)
123 KOG3081 Vesicle coat complex C 98.4 0.00019 4.1E-09 63.7 22.7 138 370-518 116-257 (299)
124 COG5010 TadD Flp pilus assembl 98.4 6.9E-05 1.5E-09 66.4 20.0 159 156-318 70-228 (257)
125 PRK14720 transcript cleavage f 98.4 0.00015 3.3E-09 77.2 26.4 241 113-408 27-268 (906)
126 KOG3081 Vesicle coat complex C 98.4 0.00024 5.2E-09 63.1 22.7 86 302-391 147-236 (299)
127 PRK15359 type III secretion sy 98.4 3.5E-05 7.6E-10 64.6 16.9 95 155-251 27-121 (144)
128 PRK15179 Vi polysaccharide bio 98.4 0.00021 4.6E-09 75.3 26.2 147 219-369 83-229 (694)
129 PRK15179 Vi polysaccharide bio 98.4 0.00024 5.3E-09 74.9 26.4 136 358-496 82-217 (694)
130 PRK14720 transcript cleavage f 98.4 0.00024 5.3E-09 75.7 26.0 150 329-513 118-268 (906)
131 PRK15359 type III secretion sy 98.3 3.5E-05 7.6E-10 64.6 15.3 108 116-226 23-130 (144)
132 COG4783 Putative Zn-dependent 98.3 0.0005 1.1E-08 66.5 23.1 116 199-318 318-434 (484)
133 COG4783 Putative Zn-dependent 98.3 0.00041 8.9E-09 67.0 22.2 139 371-530 315-453 (484)
134 TIGR02552 LcrH_SycD type III s 98.2 9E-05 2E-09 61.6 15.1 97 153-251 18-114 (135)
135 TIGR02552 LcrH_SycD type III s 98.2 0.00012 2.6E-09 60.8 15.2 97 188-286 18-114 (135)
136 PF09976 TPR_21: Tetratricopep 98.1 0.00026 5.7E-09 59.5 15.5 126 434-563 14-144 (145)
137 KOG2041 WD40 repeat protein [G 98.0 0.011 2.3E-07 59.8 27.8 330 184-552 689-1072(1189)
138 KOG3060 Uncharacterized conser 98.0 0.0057 1.2E-07 54.2 23.0 186 307-496 27-220 (289)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00021 4.6E-09 69.6 16.0 126 154-285 171-296 (395)
140 KOG2041 WD40 repeat protein [G 98.0 0.013 2.9E-07 59.1 28.0 64 467-530 1021-1085(1189)
141 PF09976 TPR_21: Tetratricopep 98.0 0.00034 7.4E-09 58.9 15.1 86 195-282 56-143 (145)
142 TIGR00756 PPR pentatricopeptid 98.0 9.2E-06 2E-10 49.2 3.9 33 119-151 2-34 (35)
143 TIGR00756 PPR pentatricopeptid 98.0 1.2E-05 2.6E-10 48.7 4.4 33 434-466 2-34 (35)
144 KOG3060 Uncharacterized conser 98.0 0.0072 1.6E-07 53.6 22.4 188 340-531 25-220 (289)
145 PF13812 PPR_3: Pentatricopept 97.9 1.9E-05 4.2E-10 47.4 4.4 33 433-465 2-34 (34)
146 PF13812 PPR_3: Pentatricopept 97.9 1.7E-05 3.8E-10 47.6 4.0 33 118-150 2-34 (34)
147 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00052 1.1E-08 67.0 15.9 124 190-320 172-296 (395)
148 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00096 2.1E-08 53.8 13.9 98 119-216 4-105 (119)
149 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00059 1.3E-08 55.1 12.4 93 436-530 6-104 (119)
150 PF10037 MRP-S27: Mitochondria 97.8 0.00052 1.1E-08 67.3 13.5 125 356-480 60-186 (429)
151 cd00189 TPR Tetratricopeptide 97.7 0.00059 1.3E-08 52.1 11.3 94 120-215 3-96 (100)
152 cd00189 TPR Tetratricopeptide 97.7 0.00069 1.5E-08 51.7 11.4 93 155-249 3-95 (100)
153 PF10037 MRP-S27: Mitochondria 97.7 0.00069 1.5E-08 66.4 13.0 125 321-445 60-186 (429)
154 PF01535 PPR: PPR repeat; Int 97.7 4.8E-05 1E-09 44.5 3.2 29 119-147 2-30 (31)
155 PF12895 Apc3: Anaphase-promot 97.6 0.00012 2.5E-09 55.0 5.5 80 130-211 2-82 (84)
156 PF08579 RPM2: Mitochondrial r 97.6 0.00093 2E-08 51.2 10.0 80 120-199 28-116 (120)
157 PF01535 PPR: PPR repeat; Int 97.6 7.9E-05 1.7E-09 43.5 3.5 29 434-462 2-30 (31)
158 PF12895 Apc3: Anaphase-promot 97.6 0.00018 4E-09 53.9 6.1 80 480-562 2-83 (84)
159 PRK10866 outer membrane biogen 97.6 0.052 1.1E-06 49.9 23.3 81 116-197 31-114 (243)
160 PRK02603 photosystem I assembl 97.6 0.003 6.5E-08 54.9 14.6 94 116-210 34-129 (172)
161 PF07079 DUF1347: Protein of u 97.6 0.084 1.8E-06 51.1 39.7 259 126-391 15-327 (549)
162 KOG2053 Mitochondrial inherita 97.6 0.14 3.1E-06 53.7 46.3 192 127-322 53-256 (932)
163 PF05843 Suf: Suppressor of fo 97.6 0.0023 4.9E-08 60.4 14.6 129 118-250 2-135 (280)
164 PLN03088 SGT1, suppressor of 97.5 0.0025 5.4E-08 62.5 14.7 92 123-216 8-99 (356)
165 PF05843 Suf: Suppressor of fo 97.5 0.0037 8.1E-08 58.9 15.2 130 398-530 2-135 (280)
166 PF08579 RPM2: Mitochondrial r 97.5 0.0023 5E-08 49.1 10.6 74 404-477 32-114 (120)
167 PRK15363 pathogenicity island 97.5 0.0027 5.9E-08 52.6 11.9 96 118-215 36-131 (157)
168 PF14938 SNAP: Soluble NSF att 97.5 0.035 7.6E-07 52.6 21.1 28 118-145 36-63 (282)
169 PRK15363 pathogenicity island 97.5 0.0031 6.7E-08 52.2 11.9 97 432-530 35-131 (157)
170 PF12688 TPR_5: Tetratrico pep 97.5 0.0072 1.6E-07 48.2 13.7 108 122-233 6-117 (120)
171 CHL00033 ycf3 photosystem I as 97.4 0.0049 1.1E-07 53.4 14.0 94 117-211 35-137 (168)
172 PRK02603 photosystem I assembl 97.4 0.0073 1.6E-07 52.5 15.1 92 151-243 34-127 (172)
173 COG4700 Uncharacterized protei 97.4 0.047 1E-06 46.1 18.4 155 369-529 63-220 (251)
174 PRK10153 DNA-binding transcrip 97.4 0.015 3.2E-07 59.8 18.5 65 503-569 421-485 (517)
175 CHL00033 ycf3 photosystem I as 97.4 0.0047 1E-07 53.5 12.9 81 152-233 35-117 (168)
176 PLN03088 SGT1, suppressor of 97.4 0.0068 1.5E-07 59.4 15.2 91 159-251 9-99 (356)
177 KOG0550 Molecular chaperone (D 97.3 0.16 3.5E-06 48.6 24.4 89 371-460 258-349 (486)
178 COG4700 Uncharacterized protei 97.3 0.06 1.3E-06 45.5 17.9 134 359-494 86-220 (251)
179 PRK10866 outer membrane biogen 97.3 0.099 2.2E-06 48.1 21.4 57 508-564 181-239 (243)
180 PRK10153 DNA-binding transcrip 97.3 0.016 3.6E-07 59.4 17.7 61 467-529 420-480 (517)
181 PF06239 ECSIT: Evolutionarily 97.3 0.0082 1.8E-07 52.3 12.8 104 360-482 45-153 (228)
182 PF06239 ECSIT: Evolutionarily 97.2 0.01 2.2E-07 51.8 13.1 105 429-552 44-153 (228)
183 PF04840 Vps16_C: Vps16, C-ter 97.2 0.21 4.6E-06 47.8 29.3 109 329-457 179-287 (319)
184 PF14559 TPR_19: Tetratricopep 97.2 0.0014 3E-08 46.7 6.7 50 130-180 4-53 (68)
185 PF13414 TPR_11: TPR repeat; P 97.2 0.0016 3.5E-08 46.5 7.0 65 502-567 3-68 (69)
186 KOG0550 Molecular chaperone (D 97.2 0.11 2.3E-06 49.8 20.0 156 370-531 177-350 (486)
187 PF14559 TPR_19: Tetratricopep 97.2 0.0015 3.3E-08 46.5 6.3 65 162-229 1-65 (68)
188 KOG0553 TPR repeat-containing 97.2 0.0054 1.2E-07 55.9 10.9 99 162-264 91-189 (304)
189 PF14938 SNAP: Soluble NSF att 97.1 0.026 5.7E-07 53.5 16.2 124 434-559 116-256 (282)
190 KOG0553 TPR repeat-containing 97.1 0.0088 1.9E-07 54.6 11.9 98 405-507 89-187 (304)
191 PF13432 TPR_16: Tetratricopep 97.1 0.0029 6.3E-08 44.6 7.2 59 509-568 4-62 (65)
192 PF13414 TPR_11: TPR repeat; P 97.1 0.0029 6.2E-08 45.2 7.0 64 116-180 2-66 (69)
193 PF13432 TPR_16: Tetratricopep 97.1 0.0027 5.9E-08 44.7 6.7 57 124-181 4-60 (65)
194 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.34 7.4E-06 47.0 35.2 405 114-530 39-530 (660)
195 KOG1130 Predicted G-alpha GTPa 97.0 0.0066 1.4E-07 57.5 10.7 265 125-390 25-343 (639)
196 COG4235 Cytochrome c biogenesi 97.0 0.04 8.7E-07 50.6 15.5 101 184-286 153-256 (287)
197 PF12688 TPR_5: Tetratrico pep 97.0 0.057 1.2E-06 43.2 14.5 51 199-249 13-65 (120)
198 KOG2796 Uncharacterized conser 97.0 0.084 1.8E-06 47.2 16.4 132 189-321 179-315 (366)
199 COG4235 Cytochrome c biogenesi 97.0 0.056 1.2E-06 49.7 15.7 101 219-321 153-256 (287)
200 KOG1538 Uncharacterized conser 96.9 0.31 6.7E-06 49.3 21.6 103 114-247 553-657 (1081)
201 KOG2280 Vacuolar assembly/sort 96.9 0.67 1.4E-05 48.0 28.1 138 181-320 426-574 (829)
202 KOG2796 Uncharacterized conser 96.9 0.035 7.5E-07 49.6 13.3 165 124-298 156-325 (366)
203 COG3898 Uncharacterized membra 96.9 0.44 9.6E-06 45.4 31.7 291 155-462 85-393 (531)
204 PRK10803 tol-pal system protei 96.9 0.027 5.9E-07 52.2 13.3 94 435-530 146-245 (263)
205 PF13525 YfiO: Outer membrane 96.8 0.19 4.1E-06 44.9 18.2 47 508-556 147-197 (203)
206 KOG1538 Uncharacterized conser 96.8 0.11 2.3E-06 52.5 17.3 88 432-530 747-845 (1081)
207 PF13525 YfiO: Outer membrane 96.8 0.37 8E-06 43.1 21.1 65 118-182 6-72 (203)
208 PRK10803 tol-pal system protei 96.7 0.035 7.7E-07 51.5 13.0 99 118-216 144-246 (263)
209 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.64 1.4E-05 45.2 35.0 416 137-566 29-531 (660)
210 PF03704 BTAD: Bacterial trans 96.6 0.12 2.6E-06 43.4 14.3 59 190-249 65-123 (146)
211 PF13371 TPR_9: Tetratricopept 96.5 0.011 2.4E-07 42.6 6.5 53 476-529 4-56 (73)
212 PF13281 DUF4071: Domain of un 96.5 0.85 1.9E-05 44.2 20.6 31 501-531 304-334 (374)
213 KOG1130 Predicted G-alpha GTPa 96.5 0.038 8.1E-07 52.6 11.1 132 434-565 197-343 (639)
214 KOG2114 Vacuolar assembly/sort 96.3 1.8 3.9E-05 45.7 24.0 121 117-247 334-456 (933)
215 PF13281 DUF4071: Domain of un 96.3 1.1 2.3E-05 43.6 20.4 95 156-250 145-254 (374)
216 PF13371 TPR_9: Tetratricopept 96.3 0.029 6.3E-07 40.4 7.9 55 126-181 4-58 (73)
217 PF04840 Vps16_C: Vps16, C-ter 96.3 1.1 2.4E-05 42.9 29.3 109 400-528 180-288 (319)
218 KOG1258 mRNA processing protei 96.2 1.7 3.6E-05 44.2 35.8 410 117-551 45-489 (577)
219 PF13424 TPR_12: Tetratricopep 96.2 0.018 3.9E-07 42.2 6.3 61 504-564 7-73 (78)
220 PF03704 BTAD: Bacterial trans 96.1 0.036 7.9E-07 46.5 8.8 67 158-225 68-139 (146)
221 PF13424 TPR_12: Tetratricopep 96.1 0.028 6.1E-07 41.2 7.0 61 469-529 7-73 (78)
222 PF07079 DUF1347: Protein of u 96.1 1.6 3.5E-05 42.7 34.3 188 115-321 126-327 (549)
223 PRK15331 chaperone protein Sic 96.0 0.18 3.9E-06 42.3 11.8 86 163-250 48-133 (165)
224 COG3898 Uncharacterized membra 95.9 1.6 3.6E-05 41.7 32.3 294 190-497 85-393 (531)
225 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.18 3.9E-06 49.5 13.1 67 114-181 72-141 (453)
226 KOG2280 Vacuolar assembly/sort 95.9 2.7 5.9E-05 43.8 33.3 325 215-560 425-793 (829)
227 PF12921 ATP13: Mitochondrial 95.8 0.18 3.8E-06 40.8 10.9 53 497-549 47-100 (126)
228 PRK15331 chaperone protein Sic 95.8 0.27 5.9E-06 41.2 12.1 95 120-216 40-134 (165)
229 PF09205 DUF1955: Domain of un 95.6 0.87 1.9E-05 36.4 13.3 138 410-569 15-152 (161)
230 KOG0543 FKBP-type peptidyl-pro 95.6 0.24 5.2E-06 47.6 12.1 139 124-285 215-354 (397)
231 PF12921 ATP13: Mitochondrial 95.5 0.23 5E-06 40.1 10.4 51 182-232 47-98 (126)
232 PF04053 Coatomer_WDAD: Coatom 95.5 0.38 8.3E-06 48.3 14.1 158 124-317 268-427 (443)
233 KOG4555 TPR repeat-containing 95.4 0.61 1.3E-05 37.1 11.7 93 124-217 50-145 (175)
234 KOG2114 Vacuolar assembly/sort 95.3 4.7 0.0001 42.7 26.4 147 155-316 337-487 (933)
235 COG3118 Thioredoxin domain-con 95.3 1.7 3.7E-05 40.2 16.0 147 160-309 142-289 (304)
236 PLN03098 LPA1 LOW PSII ACCUMUL 95.2 0.35 7.5E-06 47.6 12.4 66 429-496 72-141 (453)
237 COG3118 Thioredoxin domain-con 95.2 2.5 5.5E-05 39.1 18.0 143 197-342 144-287 (304)
238 COG1729 Uncharacterized protei 95.2 0.33 7.1E-06 44.2 11.3 87 444-530 153-243 (262)
239 smart00299 CLH Clathrin heavy 95.2 1.5 3.3E-05 36.3 15.5 85 121-213 11-95 (140)
240 KOG0543 FKBP-type peptidyl-pro 95.1 0.52 1.1E-05 45.4 12.7 139 159-321 215-355 (397)
241 PF10300 DUF3808: Protein of u 95.1 2 4.4E-05 43.9 18.1 118 445-565 246-375 (468)
242 KOG3941 Intermediate in Toll s 95.1 0.43 9.3E-06 43.4 11.4 105 429-552 64-173 (406)
243 PF04053 Coatomer_WDAD: Coatom 95.0 0.86 1.9E-05 45.9 14.9 130 295-457 298-427 (443)
244 PF13512 TPR_18: Tetratricopep 94.9 1.1 2.3E-05 36.8 12.5 84 117-200 10-95 (142)
245 COG0457 NrfG FOG: TPR repeat [ 94.8 2.9 6.3E-05 37.6 30.6 222 306-530 37-264 (291)
246 PF04184 ST7: ST7 protein; In 94.6 3.8 8.3E-05 40.8 17.5 99 469-568 261-377 (539)
247 PF10300 DUF3808: Protein of u 94.6 2.7 5.9E-05 43.0 17.6 116 411-529 247-374 (468)
248 PF08631 SPO22: Meiosis protei 94.6 4.2 9.2E-05 38.4 26.0 61 365-426 87-150 (278)
249 KOG3941 Intermediate in Toll s 94.5 0.35 7.6E-06 43.9 9.4 116 219-353 64-185 (406)
250 PF09205 DUF1955: Domain of un 94.5 2.1 4.5E-05 34.4 14.6 61 331-392 90-150 (161)
251 smart00299 CLH Clathrin heavy 94.4 2.5 5.4E-05 35.0 15.8 39 369-408 14-52 (140)
252 COG1729 Uncharacterized protei 94.2 0.89 1.9E-05 41.5 11.5 97 119-216 144-244 (262)
253 KOG4555 TPR repeat-containing 94.2 1.2 2.6E-05 35.5 10.5 88 199-287 55-145 (175)
254 KOG1585 Protein required for f 94.1 4.1 9E-05 36.5 17.9 205 118-349 32-249 (308)
255 KOG2610 Uncharacterized conser 94.1 1.7 3.6E-05 40.8 13.1 162 339-503 115-284 (491)
256 COG4105 ComL DNA uptake lipopr 94.0 4.7 0.0001 36.6 23.3 80 119-198 36-117 (254)
257 PF13512 TPR_18: Tetratricopep 93.9 2.2 4.7E-05 35.0 12.1 53 199-251 22-76 (142)
258 KOG1920 IkappaB kinase complex 93.8 13 0.00029 41.2 22.6 105 298-422 945-1051(1265)
259 PRK11906 transcriptional regul 93.7 5.6 0.00012 39.6 16.6 147 378-528 274-433 (458)
260 PF08631 SPO22: Meiosis protei 93.6 6.6 0.00014 37.1 25.9 185 377-564 51-273 (278)
261 PF13428 TPR_14: Tetratricopep 93.6 0.25 5.4E-06 31.3 5.1 28 119-146 3-30 (44)
262 KOG2610 Uncharacterized conser 93.1 2.9 6.4E-05 39.2 12.8 154 373-529 114-274 (491)
263 PRK11906 transcriptional regul 93.1 7.9 0.00017 38.5 16.6 145 412-562 273-432 (458)
264 COG3629 DnrI DNA-binding trans 93.0 1.3 2.9E-05 41.1 10.7 77 189-266 155-236 (280)
265 PF10345 Cohesin_load: Cohesin 92.9 15 0.00032 39.3 39.9 440 115-565 28-605 (608)
266 PF13428 TPR_14: Tetratricopep 92.9 0.4 8.7E-06 30.3 5.3 21 194-214 8-28 (44)
267 COG4649 Uncharacterized protei 92.8 5.4 0.00012 33.8 14.0 134 397-531 59-196 (221)
268 COG4649 Uncharacterized protei 92.6 5.7 0.00012 33.6 14.0 124 127-250 68-195 (221)
269 KOG1941 Acetylcholine receptor 92.5 4.9 0.00011 38.2 13.6 128 262-389 127-273 (518)
270 COG4105 ComL DNA uptake lipopr 92.3 8.6 0.00019 35.0 21.2 57 508-565 173-232 (254)
271 PF04097 Nic96: Nup93/Nic96; 92.3 18 0.00039 38.6 20.7 88 299-391 265-356 (613)
272 COG0457 NrfG FOG: TPR repeat [ 92.2 8.1 0.00018 34.5 30.4 222 271-496 37-265 (291)
273 KOG1941 Acetylcholine receptor 92.2 11 0.00024 36.0 16.0 127 403-529 128-273 (518)
274 KOG1258 mRNA processing protei 92.1 16 0.00034 37.5 33.8 374 119-516 81-489 (577)
275 PF04184 ST7: ST7 protein; In 91.9 15 0.00033 36.9 17.7 60 226-285 263-323 (539)
276 PF09613 HrpB1_HrpK: Bacterial 91.8 3.9 8.6E-05 34.3 11.1 63 433-497 8-74 (160)
277 COG3629 DnrI DNA-binding trans 91.7 2.1 4.6E-05 39.7 10.5 82 152-234 153-239 (280)
278 PF13176 TPR_7: Tetratricopept 91.4 0.19 4.1E-06 30.2 2.3 25 540-564 2-26 (36)
279 PF13176 TPR_7: Tetratricopept 91.4 0.43 9.4E-06 28.6 3.9 25 120-144 2-26 (36)
280 PF13170 DUF4003: Protein of u 91.4 13 0.00029 35.3 19.4 126 205-332 80-222 (297)
281 PF13170 DUF4003: Protein of u 91.2 14 0.0003 35.1 20.8 131 379-511 79-226 (297)
282 PF07035 Mic1: Colon cancer-as 91.2 8.7 0.00019 32.7 15.7 133 209-355 16-148 (167)
283 PF10602 RPN7: 26S proteasome 90.7 4.1 8.9E-05 35.3 10.8 95 433-529 37-140 (177)
284 PF00515 TPR_1: Tetratricopept 90.6 0.85 1.8E-05 26.7 4.7 31 538-568 2-32 (34)
285 PF07719 TPR_2: Tetratricopept 90.5 0.91 2E-05 26.4 4.8 31 538-568 2-32 (34)
286 PF10602 RPN7: 26S proteasome 90.4 3.7 7.9E-05 35.6 10.2 96 468-563 37-139 (177)
287 COG2909 MalT ATP-dependent tra 90.3 30 0.00065 37.4 27.4 225 338-562 426-684 (894)
288 KOG1550 Extracellular protein 90.3 26 0.00057 36.8 25.8 178 168-357 228-427 (552)
289 COG2976 Uncharacterized protei 90.3 9.9 0.00021 33.0 12.2 90 475-569 97-191 (207)
290 TIGR02561 HrpB1_HrpK type III 90.2 7 0.00015 32.3 10.8 61 433-497 8-74 (153)
291 PF07575 Nucleopor_Nup85: Nup8 90.0 23 0.0005 37.4 17.8 26 116-142 148-173 (566)
292 KOG1550 Extracellular protein 89.3 32 0.00069 36.3 28.1 179 133-323 228-428 (552)
293 KOG2396 HAT (Half-A-TPR) repea 89.2 26 0.00057 35.2 38.3 241 310-564 300-557 (568)
294 KOG1920 IkappaB kinase complex 89.2 42 0.00092 37.6 28.8 115 394-528 932-1052(1265)
295 KOG2066 Vacuolar assembly/sort 89.1 34 0.00073 36.4 26.5 73 194-272 363-438 (846)
296 KOG1585 Protein required for f 89.0 17 0.00037 32.8 17.1 50 368-418 196-248 (308)
297 COG3947 Response regulator con 88.6 20 0.00044 33.2 15.5 58 471-529 283-340 (361)
298 PF07035 Mic1: Colon cancer-as 88.6 14 0.00031 31.4 15.0 133 173-319 15-147 (167)
299 cd00923 Cyt_c_Oxidase_Va Cytoc 88.2 2 4.4E-05 32.2 5.8 63 482-545 22-84 (103)
300 PRK15180 Vi polysaccharide bio 88.2 8.3 0.00018 38.2 11.5 90 478-569 334-423 (831)
301 PF02284 COX5A: Cytochrome c o 88.0 5.6 0.00012 30.3 8.1 60 485-545 28-87 (108)
302 PRK09687 putative lyase; Provi 87.6 25 0.00055 33.1 27.2 232 290-546 35-276 (280)
303 PF04097 Nic96: Nup93/Nic96; 87.5 44 0.00094 35.7 19.5 227 335-571 266-536 (613)
304 PF02259 FAT: FAT domain; Int 87.4 30 0.00065 33.8 21.2 66 430-495 144-212 (352)
305 PF13431 TPR_17: Tetratricopep 87.4 0.77 1.7E-05 27.1 2.8 21 186-206 12-32 (34)
306 KOG0276 Vesicle coat complex C 87.1 7 0.00015 39.9 10.6 45 198-248 648-692 (794)
307 PF09613 HrpB1_HrpK: Bacterial 86.9 18 0.00038 30.5 12.7 50 199-250 22-72 (160)
308 PF13431 TPR_17: Tetratricopep 86.8 0.9 2E-05 26.8 2.9 22 151-172 12-33 (34)
309 PF11207 DUF2989: Protein of u 86.8 7.4 0.00016 34.0 9.4 78 478-557 118-198 (203)
310 KOG4570 Uncharacterized conser 86.2 13 0.00029 34.8 11.1 48 377-424 115-162 (418)
311 cd00923 Cyt_c_Oxidase_Va Cytoc 86.0 6.6 0.00014 29.6 7.4 46 449-494 24-69 (103)
312 KOG0276 Vesicle coat complex C 85.5 12 0.00027 38.2 11.4 149 340-528 599-747 (794)
313 KOG4570 Uncharacterized conser 85.5 10 0.00023 35.4 10.1 103 182-286 59-164 (418)
314 PF07575 Nucleopor_Nup85: Nup8 85.3 41 0.0009 35.6 16.2 60 118-178 114-174 (566)
315 PF13374 TPR_10: Tetratricopep 84.8 2.2 4.8E-05 26.1 4.2 28 118-145 3-30 (42)
316 PF00515 TPR_1: Tetratricopept 84.8 2.6 5.7E-05 24.5 4.3 28 119-146 3-30 (34)
317 KOG4234 TPR repeat-containing 84.5 9.5 0.00021 33.2 8.8 90 440-531 103-197 (271)
318 PF11207 DUF2989: Protein of u 83.7 16 0.00035 32.0 10.1 79 197-277 117-198 (203)
319 PF13374 TPR_10: Tetratricopep 83.5 3.1 6.8E-05 25.4 4.5 28 538-565 3-30 (42)
320 PF02259 FAT: FAT domain; Int 83.2 48 0.001 32.4 22.5 68 394-461 143-213 (352)
321 PF02284 COX5A: Cytochrome c o 82.9 19 0.00041 27.6 9.3 45 451-495 29-73 (108)
322 PF07719 TPR_2: Tetratricopept 81.8 4 8.7E-05 23.5 4.3 28 119-146 3-30 (34)
323 PRK09687 putative lyase; Provi 81.8 47 0.001 31.3 29.1 78 151-234 36-117 (280)
324 PF13181 TPR_8: Tetratricopept 81.4 3.3 7.2E-05 24.0 3.8 31 538-568 2-32 (34)
325 PF13174 TPR_6: Tetratricopept 81.3 3.3 7.1E-05 23.7 3.8 27 542-568 5-31 (33)
326 COG4455 ImpE Protein of avirul 81.0 13 0.00028 32.9 8.4 55 158-213 7-61 (273)
327 KOG0890 Protein kinase of the 79.8 1.6E+02 0.0035 36.2 25.4 316 227-567 1388-1732(2382)
328 COG3947 Response regulator con 79.6 54 0.0012 30.6 14.9 55 333-388 285-339 (361)
329 KOG4234 TPR repeat-containing 79.5 28 0.00061 30.5 9.8 89 162-251 105-197 (271)
330 TIGR02561 HrpB1_HrpK type III 78.9 36 0.00079 28.2 11.7 51 269-321 22-73 (153)
331 COG4785 NlpI Lipoprotein NlpI, 78.8 47 0.001 29.5 17.7 184 336-530 74-265 (297)
332 KOG4648 Uncharacterized conser 78.7 6.8 0.00015 37.0 6.5 92 440-536 105-197 (536)
333 TIGR02508 type_III_yscG type I 78.4 27 0.00059 26.6 8.4 50 162-217 49-98 (115)
334 KOG2471 TPR repeat-containing 78.4 48 0.001 33.3 12.2 108 442-551 250-383 (696)
335 PF13929 mRNA_stabil: mRNA sta 78.1 60 0.0013 30.4 16.0 114 378-491 144-262 (292)
336 KOG0403 Neoplastic transformat 78.0 77 0.0017 31.5 17.0 24 260-283 348-371 (645)
337 PF00637 Clathrin: Region in C 77.9 0.84 1.8E-05 38.0 0.5 54 123-176 13-66 (143)
338 PF00637 Clathrin: Region in C 77.9 0.68 1.5E-05 38.6 -0.1 85 438-529 13-97 (143)
339 TIGR03504 FimV_Cterm FimV C-te 77.8 3.2 6.9E-05 26.2 2.9 22 508-529 5-26 (44)
340 COG4785 NlpI Lipoprotein NlpI, 77.3 53 0.0011 29.3 15.1 29 328-356 238-266 (297)
341 KOG4648 Uncharacterized conser 76.8 17 0.00036 34.5 8.4 55 124-180 104-159 (536)
342 TIGR03504 FimV_Cterm FimV C-te 76.6 6.2 0.00014 24.9 4.0 20 160-179 7-26 (44)
343 KOG2297 Predicted translation 75.8 71 0.0015 30.0 20.4 170 256-452 164-341 (412)
344 KOG0890 Protein kinase of the 75.4 2.1E+02 0.0046 35.3 26.5 322 192-531 1388-1731(2382)
345 PF07721 TPR_4: Tetratricopept 74.8 4.3 9.4E-05 22.0 2.7 21 121-141 5-25 (26)
346 COG4455 ImpE Protein of avirul 74.7 25 0.00054 31.2 8.4 128 434-572 3-140 (273)
347 KOG4077 Cytochrome c oxidase, 73.5 14 0.00031 29.4 6.0 60 485-545 67-126 (149)
348 KOG1464 COP9 signalosome, subu 72.5 80 0.0017 29.1 18.3 201 217-418 21-252 (440)
349 COG1747 Uncharacterized N-term 72.2 1.2E+02 0.0026 30.9 25.6 94 326-424 65-158 (711)
350 COG2909 MalT ATP-dependent tra 71.7 1.6E+02 0.0035 32.2 30.7 226 267-492 425-684 (894)
351 PF13181 TPR_8: Tetratricopept 71.5 10 0.00022 21.8 4.0 27 119-145 3-29 (34)
352 PF13174 TPR_6: Tetratricopept 70.4 8.2 0.00018 21.9 3.4 19 161-179 9-27 (33)
353 PF07163 Pex26: Pex26 protein; 70.3 60 0.0013 30.1 10.1 87 124-210 90-181 (309)
354 KOG3364 Membrane protein invol 70.1 41 0.0009 27.4 8.0 68 464-531 29-100 (149)
355 PF06552 TOM20_plant: Plant sp 69.1 55 0.0012 28.2 9.1 108 133-251 7-136 (186)
356 PF08424 NRDE-2: NRDE-2, neces 69.1 1.1E+02 0.0025 29.5 18.1 81 394-476 16-108 (321)
357 KOG2066 Vacuolar assembly/sort 68.7 1.7E+02 0.0038 31.5 30.1 22 298-319 511-532 (846)
358 PF07163 Pex26: Pex26 protein; 68.3 75 0.0016 29.6 10.2 128 118-245 36-181 (309)
359 PF10579 Rapsyn_N: Rapsyn N-te 68.0 19 0.00042 26.0 5.2 47 514-560 18-66 (80)
360 KOG2396 HAT (Half-A-TPR) repea 67.5 1.5E+02 0.0032 30.2 37.7 394 114-530 102-558 (568)
361 smart00028 TPR Tetratricopepti 66.6 11 0.00023 20.5 3.5 26 540-565 4-29 (34)
362 KOG4077 Cytochrome c oxidase, 66.5 46 0.00099 26.7 7.4 45 451-495 68-112 (149)
363 COG1747 Uncharacterized N-term 65.4 1.7E+02 0.0036 30.0 25.6 179 289-475 63-247 (711)
364 COG2976 Uncharacterized protei 64.9 97 0.0021 27.2 15.0 89 299-392 96-189 (207)
365 PF13929 mRNA_stabil: mRNA sta 63.6 1.3E+02 0.0029 28.2 18.9 58 254-311 199-257 (292)
366 PF09670 Cas_Cas02710: CRISPR- 63.4 1.6E+02 0.0035 29.2 12.9 53 407-460 141-197 (379)
367 PF06552 TOM20_plant: Plant sp 63.1 97 0.0021 26.8 9.4 27 309-337 97-123 (186)
368 PHA02875 ankyrin repeat protei 62.7 1.7E+02 0.0038 29.3 15.7 75 233-315 10-88 (413)
369 KOG0128 RNA-binding protein SA 62.0 2.4E+02 0.0052 30.7 33.9 97 116-215 112-218 (881)
370 PF13934 ELYS: Nuclear pore co 60.4 1.3E+02 0.0029 27.2 11.1 21 193-213 114-134 (226)
371 PF09670 Cas_Cas02710: CRISPR- 60.1 1.9E+02 0.0041 28.8 12.6 59 122-181 136-198 (379)
372 KOG4279 Serine/threonine prote 59.3 2.6E+02 0.0056 30.2 14.9 18 513-530 377-394 (1226)
373 PF11848 DUF3368: Domain of un 58.5 42 0.0009 21.6 5.2 34 512-545 12-45 (48)
374 TIGR02508 type_III_yscG type I 58.5 82 0.0018 24.2 8.8 50 197-252 49-98 (115)
375 PF11846 DUF3366: Domain of un 58.3 59 0.0013 28.6 8.0 31 499-529 141-171 (193)
376 COG0790 FOG: TPR repeat, SEL1 58.1 1.7E+02 0.0036 27.7 23.5 150 339-497 53-221 (292)
377 PF14689 SPOB_a: Sensor_kinase 57.3 19 0.00042 24.7 3.7 25 505-529 26-50 (62)
378 PF12862 Apc5: Anaphase-promot 56.7 73 0.0016 24.0 7.2 53 478-530 9-69 (94)
379 PF10579 Rapsyn_N: Rapsyn N-te 56.4 44 0.00094 24.3 5.3 19 505-523 46-64 (80)
380 KOG2297 Predicted translation 54.7 1.9E+02 0.0042 27.3 17.4 19 328-346 322-340 (412)
381 PF09986 DUF2225: Uncharacteri 54.6 1.4E+02 0.0031 26.8 9.7 91 441-531 86-194 (214)
382 PF11846 DUF3366: Domain of un 54.5 59 0.0013 28.6 7.4 32 464-495 141-172 (193)
383 KOG2659 LisH motif-containing 54.4 1.5E+02 0.0033 26.7 9.5 99 429-529 23-130 (228)
384 PRK11619 lytic murein transgly 53.9 3.2E+02 0.0069 29.5 36.4 115 271-388 255-372 (644)
385 PF14853 Fis1_TPR_C: Fis1 C-te 52.5 28 0.0006 23.1 3.6 20 546-565 10-29 (53)
386 PHA02875 ankyrin repeat protei 50.8 2.7E+02 0.0059 27.9 15.5 212 195-432 7-230 (413)
387 PF13762 MNE1: Mitochondrial s 50.5 1.5E+02 0.0032 24.7 10.8 81 470-550 42-128 (145)
388 PF12862 Apc5: Anaphase-promot 49.8 1.1E+02 0.0023 23.1 7.1 54 443-496 9-70 (94)
389 PF14689 SPOB_a: Sensor_kinase 49.6 52 0.0011 22.6 4.8 23 297-319 28-50 (62)
390 PF10345 Cohesin_load: Cohesin 48.2 3.8E+02 0.0082 28.8 42.1 413 115-529 57-604 (608)
391 PF08424 NRDE-2: NRDE-2, neces 47.9 2.7E+02 0.0058 26.9 18.5 79 169-249 48-129 (321)
392 PF11848 DUF3368: Domain of un 47.1 76 0.0016 20.4 5.2 30 199-228 14-43 (48)
393 KOG4507 Uncharacterized conser 46.9 1E+02 0.0022 31.9 8.1 100 338-439 618-717 (886)
394 COG5108 RPO41 Mitochondrial DN 46.6 1.4E+02 0.003 31.5 9.0 75 122-199 33-115 (1117)
395 KOG2471 TPR repeat-containing 46.3 3.4E+02 0.0074 27.7 13.4 37 441-478 344-380 (696)
396 PF13762 MNE1: Mitochondrial s 46.0 1.7E+02 0.0038 24.3 11.6 46 329-374 81-127 (145)
397 PF09477 Type_III_YscG: Bacter 45.5 1.4E+02 0.0031 23.2 9.4 79 342-427 21-99 (116)
398 PF04190 DUF410: Protein of un 45.2 2.6E+02 0.0056 26.0 17.2 102 129-245 2-113 (260)
399 cd00280 TRFH Telomeric Repeat 44.3 1.6E+02 0.0035 25.5 7.7 48 168-215 85-139 (200)
400 KOG3364 Membrane protein invol 43.9 1.8E+02 0.0039 23.9 10.1 68 429-496 29-100 (149)
401 COG5159 RPN6 26S proteasome re 43.2 2.9E+02 0.0062 26.0 20.3 126 122-247 8-150 (421)
402 KOG2582 COP9 signalosome, subu 43.2 3.3E+02 0.0071 26.6 14.1 232 324-567 72-346 (422)
403 KOG4507 Uncharacterized conser 43.0 1.9E+02 0.0042 30.0 9.3 149 114-268 568-721 (886)
404 cd08819 CARD_MDA5_2 Caspase ac 42.9 1.4E+02 0.003 22.3 7.6 38 479-521 48-85 (88)
405 TIGR02710 CRISPR-associated pr 42.8 3.5E+02 0.0075 26.8 10.9 55 123-177 136-196 (380)
406 cd00280 TRFH Telomeric Repeat 42.8 2E+02 0.0044 25.0 8.1 20 476-495 120-139 (200)
407 KOG2034 Vacuolar sorting prote 42.2 5.2E+02 0.011 28.6 28.1 48 332-388 509-556 (911)
408 PRK10564 maltose regulon perip 41.8 52 0.0011 30.9 5.0 30 260-289 260-289 (303)
409 COG0790 FOG: TPR repeat, SEL1 41.7 3.1E+02 0.0066 25.8 25.0 153 302-463 51-222 (292)
410 KOG0687 26S proteasome regulat 41.1 3.3E+02 0.0073 26.1 11.4 149 411-563 36-207 (393)
411 COG5108 RPO41 Mitochondrial DN 41.0 1.7E+02 0.0036 30.9 8.6 91 157-250 33-131 (1117)
412 KOG4521 Nuclear pore complex, 40.8 6.2E+02 0.013 29.1 14.2 23 123-145 926-948 (1480)
413 PF14853 Fis1_TPR_C: Fis1 C-te 40.8 1E+02 0.0023 20.4 5.0 22 300-321 9-30 (53)
414 KOG2908 26S proteasome regulat 40.7 3.5E+02 0.0075 26.2 10.3 59 437-495 80-143 (380)
415 PF03745 DUF309: Domain of unk 40.4 1.2E+02 0.0025 20.9 5.4 18 128-145 10-27 (62)
416 PF09986 DUF2225: Uncharacteri 39.9 2.8E+02 0.0061 24.9 11.6 23 474-496 172-194 (214)
417 PF11663 Toxin_YhaV: Toxin wit 39.0 30 0.00065 28.0 2.6 28 341-370 109-136 (140)
418 PRK10564 maltose regulon perip 39.0 60 0.0013 30.6 4.9 31 190-220 260-290 (303)
419 PF11817 Foie-gras_1: Foie gra 38.8 2.3E+02 0.0049 26.1 8.9 57 507-563 183-244 (247)
420 PF04762 IKI3: IKI3 family; I 38.6 4.8E+02 0.01 29.7 12.7 28 329-356 814-843 (928)
421 COG0735 Fur Fe2+/Zn2+ uptake r 38.3 1.8E+02 0.0039 24.2 7.3 44 193-236 26-69 (145)
422 PF09454 Vps23_core: Vps23 cor 38.2 60 0.0013 22.6 3.7 50 114-164 5-54 (65)
423 KOG2034 Vacuolar sorting prote 38.1 6E+02 0.013 28.2 29.1 302 122-460 363-695 (911)
424 smart00386 HAT HAT (Half-A-TPR 37.6 73 0.0016 17.5 3.9 28 516-544 1-28 (33)
425 PRK10941 hypothetical protein; 37.2 3.6E+02 0.0077 25.3 11.1 73 473-546 187-260 (269)
426 PF09454 Vps23_core: Vps23 cor 36.7 1E+02 0.0022 21.5 4.6 49 150-199 6-54 (65)
427 PRK09857 putative transposase; 36.5 3.1E+02 0.0067 26.1 9.5 28 542-569 245-272 (292)
428 KOG0292 Vesicle coat complex C 36.3 4.2E+02 0.0091 29.3 10.8 95 479-573 1003-1120(1202)
429 PRK10941 hypothetical protein; 36.1 3.7E+02 0.008 25.2 10.9 60 156-216 185-244 (269)
430 PF02847 MA3: MA3 domain; Int 35.9 2.1E+02 0.0045 22.2 7.3 23 436-458 6-28 (113)
431 PF03745 DUF309: Domain of unk 35.6 1.5E+02 0.0032 20.4 6.1 16 479-494 11-26 (62)
432 PRK08691 DNA polymerase III su 35.6 4.9E+02 0.011 28.3 11.5 86 448-536 180-279 (709)
433 PF11817 Foie-gras_1: Foie gra 35.5 2.4E+02 0.0051 26.0 8.5 21 438-458 184-204 (247)
434 PF04910 Tcf25: Transcriptiona 35.3 4.5E+02 0.0097 25.9 18.1 57 474-530 110-167 (360)
435 PRK11619 lytic murein transgly 34.5 6.3E+02 0.014 27.4 39.7 320 118-459 35-373 (644)
436 KOG0686 COP9 signalosome, subu 34.5 4.8E+02 0.01 26.0 14.6 62 189-250 152-215 (466)
437 PF09477 Type_III_YscG: Bacter 34.4 2.3E+02 0.0049 22.2 9.7 32 184-217 68-99 (116)
438 PF00244 14-3-3: 14-3-3 protei 34.3 3.7E+02 0.0079 24.6 10.1 163 368-530 7-197 (236)
439 COG0735 Fur Fe2+/Zn2+ uptake r 34.0 2.4E+02 0.0052 23.5 7.4 44 473-516 26-69 (145)
440 COG2178 Predicted RNA-binding 33.8 3.3E+02 0.0072 23.9 8.6 17 269-285 133-149 (204)
441 KOG0991 Replication factor C, 33.4 3.8E+02 0.0082 24.5 12.9 36 360-396 237-272 (333)
442 smart00777 Mad3_BUB1_I Mad3/BU 33.3 2.6E+02 0.0056 22.6 7.7 41 521-561 82-123 (125)
443 KOG1464 COP9 signalosome, subu 32.6 4.1E+02 0.009 24.7 21.6 266 252-527 21-328 (440)
444 PF10475 DUF2450: Protein of u 32.2 4.4E+02 0.0094 25.0 9.9 51 264-320 105-155 (291)
445 KOG2659 LisH motif-containing 32.2 3.9E+02 0.0084 24.2 9.2 61 116-178 25-90 (228)
446 PF04034 DUF367: Domain of unk 31.9 2.7E+02 0.0059 22.5 6.8 57 504-563 68-125 (127)
447 cd08819 CARD_MDA5_2 Caspase ac 31.6 2.2E+02 0.0048 21.2 7.1 14 411-424 50-63 (88)
448 KOG0991 Replication factor C, 31.0 4.2E+02 0.009 24.2 13.2 93 407-502 169-273 (333)
449 KOG2063 Vacuolar assembly/sort 30.9 8E+02 0.017 27.5 25.6 110 441-550 600-745 (877)
450 PF11838 ERAP1_C: ERAP1-like C 30.9 4.8E+02 0.01 24.9 21.2 109 413-526 146-261 (324)
451 KOG4642 Chaperone-dependent E3 30.8 4.2E+02 0.0092 24.3 11.2 83 407-493 20-104 (284)
452 KOG2063 Vacuolar assembly/sort 30.6 8.2E+02 0.018 27.5 28.0 116 294-409 506-638 (877)
453 PRK07003 DNA polymerase III su 30.3 5.9E+02 0.013 28.1 11.0 85 448-535 180-278 (830)
454 KOG0292 Vesicle coat complex C 30.2 4.7E+02 0.01 29.0 10.1 159 367-567 625-783 (1202)
455 PF15297 CKAP2_C: Cytoskeleton 30.2 5.2E+02 0.011 25.1 10.0 63 484-548 120-186 (353)
456 PF08311 Mad3_BUB1_I: Mad3/BUB 29.9 3E+02 0.0065 22.2 10.0 43 520-562 81-124 (126)
457 PRK14951 DNA polymerase III su 29.2 7.4E+02 0.016 26.6 11.6 86 448-536 185-284 (618)
458 PF10366 Vps39_1: Vacuolar sor 29.2 2.8E+02 0.0061 21.7 7.5 26 365-390 42-67 (108)
459 KOG0376 Serine-threonine phosp 29.1 1.2E+02 0.0027 30.5 5.5 50 374-425 16-66 (476)
460 PRK09857 putative transposase; 28.9 4.8E+02 0.01 24.8 9.4 57 234-291 218-274 (292)
461 PF11663 Toxin_YhaV: Toxin wit 28.5 41 0.0009 27.3 1.9 33 127-161 105-137 (140)
462 PF08311 Mad3_BUB1_I: Mad3/BUB 28.1 3.2E+02 0.007 22.0 8.8 14 512-525 109-122 (126)
463 PF10366 Vps39_1: Vacuolar sor 27.7 3E+02 0.0065 21.5 7.4 26 225-250 42-67 (108)
464 KOG4567 GTPase-activating prot 27.7 4E+02 0.0087 25.4 8.1 57 312-373 263-319 (370)
465 PF05944 Phage_term_smal: Phag 27.5 3.3E+02 0.0072 22.2 6.9 28 122-149 53-80 (132)
466 KOG0403 Neoplastic transformat 27.3 6.6E+02 0.014 25.4 27.3 59 506-567 513-573 (645)
467 cd07153 Fur_like Ferric uptake 27.1 1.8E+02 0.004 22.7 5.5 44 123-166 6-49 (116)
468 PF10475 DUF2450: Protein of u 26.8 5.5E+02 0.012 24.3 10.0 51 194-250 105-155 (291)
469 PF15297 CKAP2_C: Cytoskeleton 26.1 6.2E+02 0.013 24.7 10.2 64 448-513 119-186 (353)
470 COG2178 Predicted RNA-binding 26.0 4.6E+02 0.01 23.1 11.4 19 441-459 38-56 (204)
471 KOG4642 Chaperone-dependent E3 26.0 5.2E+02 0.011 23.7 11.7 83 163-249 21-105 (284)
472 KOG1308 Hsp70-interacting prot 25.7 56 0.0012 31.3 2.4 89 339-430 126-215 (377)
473 PF07678 A2M_comp: A-macroglob 25.3 5.3E+02 0.012 23.6 9.7 81 448-530 115-220 (246)
474 PRK06645 DNA polymerase III su 25.3 7.9E+02 0.017 25.6 11.4 87 447-536 188-291 (507)
475 PF14669 Asp_Glu_race_2: Putat 25.1 4.8E+02 0.01 23.0 14.6 55 437-491 137-205 (233)
476 KOG1114 Tripeptidyl peptidase 24.9 1E+03 0.022 26.8 14.9 82 482-564 1211-1293(1304)
477 PRK12798 chemotaxis protein; R 24.9 7.2E+02 0.016 25.0 20.8 191 340-536 125-329 (421)
478 PF02847 MA3: MA3 domain; Int 24.5 3.4E+02 0.0073 21.0 7.1 21 193-213 8-28 (113)
479 KOG1308 Hsp70-interacting prot 24.4 51 0.0011 31.5 2.0 89 164-255 126-215 (377)
480 PHA03100 ankyrin repeat protei 24.3 7.8E+02 0.017 25.2 11.3 234 172-421 48-304 (480)
481 KOG4567 GTPase-activating prot 24.1 6.4E+02 0.014 24.1 9.6 86 172-266 263-358 (370)
482 PF09868 DUF2095: Uncharacteri 24.0 3.3E+02 0.0071 21.5 5.8 24 123-146 67-90 (128)
483 PF01475 FUR: Ferric uptake re 23.8 1.8E+02 0.0039 23.0 4.9 43 122-164 12-54 (120)
484 KOG3677 RNA polymerase I-assoc 23.8 6.5E+02 0.014 25.2 9.0 58 157-214 240-299 (525)
485 KOG0687 26S proteasome regulat 23.3 6.8E+02 0.015 24.2 15.6 95 329-425 106-209 (393)
486 PF09868 DUF2095: Uncharacteri 23.3 3.1E+02 0.0068 21.6 5.5 25 193-217 67-91 (128)
487 PRK11639 zinc uptake transcrip 23.3 4.7E+02 0.01 22.4 7.6 67 344-411 8-74 (169)
488 PF02184 HAT: HAT (Half-A-TPR) 23.0 1.4E+02 0.003 17.4 2.8 23 518-542 3-25 (32)
489 PF06957 COPI_C: Coatomer (COP 22.9 1.9E+02 0.0041 29.1 5.6 113 442-571 214-334 (422)
490 PRK13342 recombination factor 22.8 7.9E+02 0.017 24.7 19.6 20 236-255 244-263 (413)
491 KOG0376 Serine-threonine phosp 22.7 1.7E+02 0.0036 29.6 5.2 101 406-512 13-115 (476)
492 PF04910 Tcf25: Transcriptiona 22.7 7.5E+02 0.016 24.4 21.7 56 299-354 110-166 (360)
493 PRK14963 DNA polymerase III su 22.6 8.9E+02 0.019 25.3 11.2 83 447-532 176-271 (504)
494 PF14669 Asp_Glu_race_2: Putat 22.5 5.4E+02 0.012 22.7 15.7 55 332-386 137-205 (233)
495 KOG0686 COP9 signalosome, subu 22.2 8E+02 0.017 24.5 15.7 62 223-285 151-215 (466)
496 PRK09462 fur ferric uptake reg 22.0 4.6E+02 0.01 21.7 7.5 33 379-411 34-66 (148)
497 PRK13342 recombination factor 21.9 8.3E+02 0.018 24.6 19.4 43 295-337 230-275 (413)
498 KOG1586 Protein required for f 21.8 6.3E+02 0.014 23.2 22.1 261 134-439 2-272 (288)
499 PRK13800 putative oxidoreducta 21.7 1.2E+03 0.026 26.5 29.5 265 254-550 632-897 (897)
500 PF11123 DNA_Packaging_2: DNA 21.2 3.2E+02 0.0069 19.6 5.3 33 167-200 12-44 (82)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-68 Score=572.23 Aligned_cols=458 Identities=19% Similarity=0.266 Sum_probs=440.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105 114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMM 193 (577)
Q Consensus 114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 193 (577)
.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcC
Q 008105 194 VGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLR--KGCPPYLITYTILIEQVCKQC 271 (577)
Q Consensus 194 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g 271 (577)
|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999986 578999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 008105 272 GIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILD 351 (577)
Q Consensus 272 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 351 (577)
++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 008105 352 IMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPC 431 (577)
Q Consensus 352 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 431 (577)
.|.+.|..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHH
Q 008105 432 LITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCR----A-------------------DQVEEAVD 488 (577)
Q Consensus 432 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~-------------------g~~~~A~~ 488 (577)
..||+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++..|.+ + +..++|..
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 999999999999999999999999999999999999999999876432 1 12467999
Q ss_pred HHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105 489 LLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKV 568 (577)
Q Consensus 489 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (577)
+|++|.+.|+.||..+|+.++.++++.+..+.+..+++.|...+..|+..+|++|++++.+. .++|..++++|.+.|+
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCC
Confidence 99999999999999999999999889999999999999998778899999999999998443 4789999999999999
Q ss_pred CCCcc
Q 008105 569 FEKGT 573 (577)
Q Consensus 569 ~~~~~ 573 (577)
.|+..
T Consensus 912 ~p~~~ 916 (1060)
T PLN03218 912 VPSVS 916 (1060)
T ss_pred CCCcc
Confidence 99875
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-67 Score=564.53 Aligned_cols=459 Identities=19% Similarity=0.309 Sum_probs=441.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008105 113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQ-IPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYN 191 (577)
Q Consensus 113 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 191 (577)
..++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++..|.+.|.+++|.++|+.|. .||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHH
Confidence 346788899999999999999999999999999996 4677788889999999999999999999997 39999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008105 192 MMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQC 271 (577)
Q Consensus 192 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 271 (577)
.++.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 008105 272 GIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLS--RGMEPNSITYNTLLHSLGSRGCWDAVDKI 349 (577)
Q Consensus 272 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 349 (577)
++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 68899999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 008105 350 LDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCS 429 (577)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 429 (577)
|+.|.+.|++|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHH
Q 008105 430 PCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVI 509 (577)
Q Consensus 430 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 509 (577)
|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----------------------cCCHHHHHHHHHHHHHc
Q 008105 510 HGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVAD-----------------------DGMTEEAYKLWQKLIEW 566 (577)
Q Consensus 510 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-----------------------~g~~~~A~~~~~~~~~~ 566 (577)
.+|++.|++++|.+++++|.+.|+.||..+|++++..|.+ .+..++|..+|++|.+.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999876542 12357899999999999
Q ss_pred CCCCCcccc
Q 008105 567 KVFEKGTTL 575 (577)
Q Consensus 567 ~~~~~~~~~ 575 (577)
|+.|+..|+
T Consensus 842 Gi~Pd~~T~ 850 (1060)
T PLN03218 842 GTLPTMEVL 850 (1060)
T ss_pred CCCCCHHHH
Confidence 999998765
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.6e-66 Score=562.92 Aligned_cols=506 Identities=16% Similarity=0.192 Sum_probs=451.9
Q ss_pred hHHHHHHHHhhCCCCccccc------cCCCCc----ceecccc--CcCCCCCcchhHHHHHHHHHhhhhhccccCCCCCC
Q 008105 38 RTQFYSQLRDLGAGRNVSLK------CRGLPG----NVCIDRV--NEVDQDEWSSESHVLAVNKKLRGLTITKKSHDPSL 105 (577)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~------~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (577)
-..+|.+|...|+.|+.+++ |..... ......+ .+..++...++..+..+++. +....+... +
T Consensus 171 A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~-g~~~~A~~l----f 245 (857)
T PLN03077 171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC-GDVVSARLV----F 245 (857)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC-CCHHHHHHH----H
Confidence 45678999999999998753 322221 1111111 24556777777777666552 222222221 2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008105 106 PSSDGPFVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVP 185 (577)
Q Consensus 106 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 185 (577)
..| ..||+++||++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++..|.+.|+.|
T Consensus 246 ~~m----~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 321 (857)
T PLN03077 246 DRM----PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321 (857)
T ss_pred hcC----CCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc
Confidence 223 4589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008105 186 DTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIE 265 (577)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 265 (577)
|..+||+|+.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~ 397 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH
Confidence 99999999999999999999999999997 68999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHH
Q 008105 266 QVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDA 345 (577)
Q Consensus 266 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 345 (577)
+|++.|++++|.++++.|.+.|+.|+..+|++|+.+|++.|++++|.++|++|. .+|..+|++++.+|++.|+.++
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~e 473 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFE 473 (857)
T ss_pred HHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHH
Confidence 999999999999999999999999999999999999999999999999999997 4688999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 008105 346 VDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNG 425 (577)
Q Consensus 346 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 425 (577)
|..+|++|.. +.+||..+|+.++.+|++.|..+.+.+++..+.+.|+.+|..++++++++|++.|++++|.++|+.+
T Consensus 474 A~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-- 550 (857)
T PLN03077 474 ALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-- 550 (857)
T ss_pred HHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--
Confidence 9999999986 5899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hCCCCccHHH
Q 008105 426 SSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIG-KRGNKMRNSA 504 (577)
Q Consensus 426 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~ 504 (577)
.||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+
T Consensus 551 ---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 551 ---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred ---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 678999999999999999999999999999999999999999999999999999999999999998 6899999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008105 505 YRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVF 569 (577)
Q Consensus 505 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (577)
|++++++|++.|++++|.+++++| ++.||..+|.+|+.+|...|+.+.|+...+++.+..+.
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~ 689 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN 689 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999 68999999999999887777777777776666664443
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.4e-65 Score=558.48 Aligned_cols=441 Identities=18% Similarity=0.214 Sum_probs=267.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008105 112 FVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYN 191 (577)
Q Consensus 112 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 191 (577)
|+.||+.++|+||.+|++.|++++|.++|++|.+ ||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~ 292 (857)
T PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292 (857)
T ss_pred CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence 3444444444444444555555555555544432 344445555555555555555555555554444445555555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008105 192 MMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQC 271 (577)
Q Consensus 192 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 271 (577)
.++.++++.|+++.|.+++..|.+.|+.||..+|++++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g 368 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNG 368 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCC
Confidence 5555555555555555555555544444555555555555555555555555554442 234444555555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 008105 272 GIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILD 351 (577)
Q Consensus 272 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 351 (577)
++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..++++|+++|++.|++++|.++|+
T Consensus 369 ~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred CHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555544455555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 008105 352 IMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPC 431 (577)
Q Consensus 352 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 431 (577)
.|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..+|+.++.+|++.|.++.+.+++..+.+.|+.++
T Consensus 449 ~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~ 523 (857)
T PLN03077 449 NIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523 (857)
T ss_pred hCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence 4432 3444555555555555555555555555543 2455555555555555555555555555555555555556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 008105 432 LITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHG 511 (577)
Q Consensus 432 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 511 (577)
..++++|+++|++.|++++|.++|+++ .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 666666666666777777777776665 478888999999999999999999999999988899999999999999
Q ss_pred HHhcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcc
Q 008105 512 LCKSKKVDMAIQVLELMI-SSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEKGT 573 (577)
Q Consensus 512 ~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 573 (577)
|++.|++++|.++|++|. +.|+.|+..+|++++++|.+.|++++|.+++++|. +.|+..
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~ 658 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPA 658 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHH
Confidence 999999999999999998 57889999999999999999999999999988873 566654
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.4e-63 Score=528.20 Aligned_cols=449 Identities=15% Similarity=0.220 Sum_probs=404.3
Q ss_pred CCCCCC-CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008105 106 PSSDGP-FVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGV 184 (577)
Q Consensus 106 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 184 (577)
..|... ++.||..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .
T Consensus 111 ~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~ 186 (697)
T PLN03081 111 EILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----E 186 (697)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----C
Confidence 344433 46789999999999999999999999999999999999999999999999999999999999999986 5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008105 185 PDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILI 264 (577)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 264 (577)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|..+.+.+++..+.+.|+.||..+|++|+
T Consensus 187 ~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li 266 (697)
T PLN03081 187 RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266 (697)
T ss_pred CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHH
Confidence 78899999999999999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHH
Q 008105 265 EQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWD 344 (577)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 344 (577)
.+|++.|++++|.++|++|. .+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~ 342 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchH
Confidence 99999999999999999986 46889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 008105 345 AVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLN 424 (577)
Q Consensus 345 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 424 (577)
+|.+++..|.+.|.+||..+|+.|+++|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.
T Consensus 343 ~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred HHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986 4688999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHH
Q 008105 425 GSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMME-NGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNS 503 (577)
Q Consensus 425 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 503 (577)
+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| +..|+..
T Consensus 419 ~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~ 495 (697)
T PLN03081 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVN 495 (697)
T ss_pred HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHH
Confidence 999999999999999999999999999999999975 689999999999999999999999999998766 4678999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008105 504 AYRLVIHGLCKSKKVDMAIQVLELMISSRYKPD-DTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEK 571 (577)
Q Consensus 504 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 571 (577)
+|+.++.+|...|+++.|..+++++. ++.|+ ..+|..|++.|.+.|++++|.+++++|.+.|+...
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999887 45564 67899999999999999999999999999998644
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.8e-63 Score=526.30 Aligned_cols=442 Identities=18% Similarity=0.272 Sum_probs=427.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008105 113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRN-QIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYN 191 (577)
Q Consensus 113 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 191 (577)
..++..+|+.+|..|.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+||
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 45677899999999999999999999999998865 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008105 192 MMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQC 271 (577)
Q Consensus 192 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 271 (577)
.++.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|+++|++|.+.|..|+..+|+.++.++++.|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999998 68999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 008105 272 GIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILD 351 (577)
Q Consensus 272 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 351 (577)
..+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|. .+|..+|++++.+|++.|+.++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997 4699999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 008105 352 IMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPC 431 (577)
Q Consensus 352 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 431 (577)
+|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++++++|++.|++++|.++|++|. .||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 468
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCccHHHHHHHHH
Q 008105 432 LITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGK-RGNKMRNSAYRLVIH 510 (577)
Q Consensus 432 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~li~ 510 (577)
..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+++++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 699999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008105 511 GLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVF 569 (577)
Q Consensus 511 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (577)
+|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+.++.
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 999999999999999987 88999999999999999999999999999999876554
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.5e-29 Score=276.90 Aligned_cols=436 Identities=13% Similarity=0.135 Sum_probs=307.0
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105 115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV 194 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 194 (577)
+++.+|..+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.+ +.+..++..+.
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 355666777777777777777777777766653 2345556666666777777777777777776654 34566667777
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008105 195 GGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIA 274 (577)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 274 (577)
..+.+.|++++|...++++.+.+ +.+...+..++..+...|++++|.++++.+... .+.+...|..+...+.+.|+++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHH
Confidence 77777777777777777766554 445566666777777777777777777777654 3556667777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008105 275 RAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMN 354 (577)
Q Consensus 275 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 354 (577)
+|.+.|+.+.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|..+++.+.
T Consensus 619 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 619 KAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777776653 3345666777777777777777777777776653 2245667777777777777777777777777
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHH
Q 008105 355 EASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLIT 434 (577)
Q Consensus 355 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 434 (577)
+.. +.+...+..+...+.+.|++++|.+.|+++...+ |+..++..+..++.+.|++++|...++.+.+.. +.+...
T Consensus 697 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~ 772 (899)
T TIGR02917 697 KQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVL 772 (899)
T ss_pred hhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 654 3456667777777777777888887777777653 444666667777777788888877777777654 556777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh
Q 008105 435 YNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCK 514 (577)
Q Consensus 435 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 514 (577)
+..+...|...|++++|...|+++.+.. +++...++.+...+...|+ .+|+++++++.+... -+..++..+...+..
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHH
Confidence 7777777777888888888888877653 4566777777777777777 778888877766432 245566677777788
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105 515 SKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLI 564 (577)
Q Consensus 515 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 564 (577)
.|++++|.++++++++.+. .+..++..++.++.+.|++++|.+++++|+
T Consensus 850 ~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred cCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8888888888888886542 377777788888888888888888887775
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2e-27 Score=265.43 Aligned_cols=440 Identities=12% Similarity=0.071 Sum_probs=262.8
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG 195 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 195 (577)
+...++.+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|++++|.+.++.+.+... ........++.
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 439 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLIL 439 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHH
Confidence 45566666666666677777777666666543 22445555555666666666666666666655432 12233444555
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008105 196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR 275 (577)
Q Consensus 196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 275 (577)
.+.+.|++++|.++++++.... +++..+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 5556666666666666655432 3455666666667777777777777776666542 3445555666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 008105 276 AIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNE 355 (577)
Q Consensus 276 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 355 (577)
|.+.++++...+ +.+..++..+...+.+.|+.++|..+++++...+ +.+...+..+...+...|++++|..+++.+.+
T Consensus 518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666666543 3345566666666666666666666666665543 22344555566666666666666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHH
Q 008105 356 ASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITY 435 (577)
Q Consensus 356 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 435 (577)
.. +.+...|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|...++.+.+.. +.+..++
T Consensus 596 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 596 AA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 42 3455566666666666666666666666666543 3455556666666666666666666666665543 4445566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhc
Q 008105 436 NTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKS 515 (577)
Q Consensus 436 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 515 (577)
..++..+...|++++|..+++.+.+.+ +++...+..+...+...|++++|.+.|+++...+ |+..++..++.++.+.
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 749 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLAS 749 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHC
Confidence 666666666666666666666665543 3345555556666666666666666666665543 3334455556666666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105 516 KKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKV 568 (577)
Q Consensus 516 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (577)
|++++|.+.++++.+. .+.+...+..+...+...|++++|.+.++++.+.++
T Consensus 750 g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 6666666666666543 233455555666666666666666666666665443
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=2.1e-20 Score=210.16 Aligned_cols=430 Identities=13% Similarity=0.059 Sum_probs=335.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHH----------
Q 008105 123 ILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVP-DTITYN---------- 191 (577)
Q Consensus 123 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~---------- 191 (577)
....+...|++++|+..|++.++.. +.+..++..+...+.+.|++++|+..|++..+..... +...|.
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 3567788999999999999999874 3378889999999999999999999999998765322 112221
Q ss_pred --HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008105 192 --MMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCK 269 (577)
Q Consensus 192 --~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 269 (577)
.....+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|++.|++.++.. +.+...+..+...+.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-
Confidence 22456778999999999999998874 4567788889999999999999999999998763 455667777777664
Q ss_pred cCCHHHHHHHHHHHHHcCCC--------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC
Q 008105 270 QCGIARAIEVLDDMAIEGCS--------PDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRG 341 (577)
Q Consensus 270 ~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 341 (577)
.++.++|...++.+...... .....+..+...+...|++++|++.+++..+.... +...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 56789999888765432100 01224556777888999999999999999987422 4557778888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCC
Q 008105 342 CWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIV---------TYNTVLGALCKEGM 412 (577)
Q Consensus 342 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---------~~~~li~~~~~~g~ 412 (577)
++++|...++.+.+.. +.+...+..+...+.+.++.++|+..++.+......++.. .+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999998754 3355555556666778999999999998876443222221 12345667889999
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008105 413 LNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKE 492 (577)
Q Consensus 413 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 492 (577)
.++|..+++. .+++...+..+...+.+.|++++|++.|++..+.. +.+...+..++..+...|++++|.+.++.
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999872 25566777889999999999999999999999863 34678899999999999999999999998
Q ss_pred HhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105 493 IGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRY--KP---DDTVFSTIVKKVADDGMTEEAYKLWQKLIE 565 (577)
Q Consensus 493 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (577)
..+.. +.+...+..+..++...|++++|.+++++++...- .| +...+..+...+...|++++|...+++.+.
T Consensus 663 ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 663 LPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 87653 22455677788889999999999999999986421 22 234666778889999999999999999874
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=6e-20 Score=206.40 Aligned_cols=439 Identities=13% Similarity=0.008 Sum_probs=289.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008105 121 NKILQNFCSRGKLTDASKLIDIMARRNQIPDFHF-CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCK 199 (577)
Q Consensus 121 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 199 (577)
..+.+.+.+.|++++|.+.|+.+.+.+. |+... ...+.......|+.++|++.++++.+.. +.+...+..+...+..
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFS 193 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHc
Confidence 4445567788888888888888876532 33221 1111122224578888888888887765 3456667777788888
Q ss_pred cCChHHHHHHHHHHhhCCC------------------C--------------CCHHHH---------------------H
Q 008105 200 RGQIRSAIALLDEMSVSGC------------------E--------------PDVITY---------------------N 226 (577)
Q Consensus 200 ~g~~~~A~~~~~~~~~~g~------------------~--------------~~~~~~---------------------~ 226 (577)
.|++++|++.++++..... . |+.... .
T Consensus 194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~ 273 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR 273 (1157)
T ss_pred cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence 8888888888877643210 0 000000 0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHhhHH---------
Q 008105 227 TILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSP-DIVTYN--------- 296 (577)
Q Consensus 227 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~--------- 296 (577)
.....+...|++++|+..|++.++.. |.+...+..+...+.+.|++++|...|++..+..... ....|.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 11234556788888888888877653 4467777788888888888888888888877653211 111121
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH------
Q 008105 297 ---SLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNI------ 367 (577)
Q Consensus 297 ---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------ 367 (577)
.....+.+.|++++|+..++++.+... .+...+..+...+...|++++|.+.|++..+... .+...+..
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 123456677888888888888877632 2445666677778888888888888887776532 22222222
Q ss_pred ------------------------------------HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008105 368 ------------------------------------LINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEG 411 (577)
Q Consensus 368 ------------------------------------li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 411 (577)
+...+...|++++|++.|++.++.. +.+...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 2334456788888888888888764 445667777888888888
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------------------------------
Q 008105 412 MLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMEN------------------------------ 461 (577)
Q Consensus 412 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------ 461 (577)
++++|...++++.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 8888888888876643 223333333322333344444443333321100
Q ss_pred ---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008105 462 ---------GISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSR 532 (577)
Q Consensus 462 ---------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 532 (577)
..+++...+..+...+.+.|++++|++.|++..+... .+...+..++..+...|++++|++.++...+.
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~- 666 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPAT- 666 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 1234555677788888999999999999999988643 36778888999999999999999999988753
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008105 533 YKP-DDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVF 569 (577)
Q Consensus 533 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (577)
.| +...+..+..++...|++++|.++++++++..+.
T Consensus 667 -~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 667 -ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred -CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 34 4566777888899999999999999999886543
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=8.9e-22 Score=188.17 Aligned_cols=434 Identities=17% Similarity=0.154 Sum_probs=327.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008105 120 NNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCK 199 (577)
Q Consensus 120 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 199 (577)
-..|..-..+.|++++|++.-...-+++ +.+......+-..+.+..+++....--....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4556777788899999988665544443 3344444455566777777776655544444443 3456788888888888
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHH
Q 008105 200 RGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITY-TILIEQVCKQCGIARAIE 278 (577)
Q Consensus 200 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~ 278 (577)
.|++++|+.+++.+.+.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+.... +.+...+...|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 899999999998888764 446778888888888899999998888888765 4544433 334445556788888888
Q ss_pred HHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 008105 279 VLDDMAIEGCSPD-IVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPN-SITYNTLLHSLGSRGCWDAVDKILDIMNEA 356 (577)
Q Consensus 279 ~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 356 (577)
.+.+.... .|. ...|+.|...+-.+|+...|+..|++..+. .|+ ...|..|...|...+.++.|...+.+....
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 88887765 333 467888888888889999999888888876 444 347788888888888888888888877765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 008105 357 SHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYN 436 (577)
Q Consensus 357 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 436 (577)
. +.....+..+...|...|..|-|+..|++.++.. +.=+..|+.|..++-..|+..+|.+.+....... +......+
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~ 358 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN 358 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence 3 2345667777778888899999999998888763 3346788888888888899999998888887764 44567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHh
Q 008105 437 TLIDGLAKKGCMEKAMVLYGQMMENGISPD-DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMR-NSAYRLVIHGLCK 514 (577)
Q Consensus 437 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~ 514 (577)
.|...|...|.+++|..+|....+- .|+ ...++.|...|-..|++++|+..+++..+ ++|+ ...|+.+...|-.
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHH
Confidence 8888888899999999888888763 454 45678888888888999999998888876 4555 4578888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008105 515 SKKVDMAIQVLELMISSRYKPD-DTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEK 571 (577)
Q Consensus 515 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 571 (577)
.|+.+.|++.+.+.+. +.|. .+.++.|...+...|+..+|+.-+++.++.+|...
T Consensus 435 ~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred hhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 8899999998888884 4565 56778888888889999999998888888665433
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.1e-20 Score=189.67 Aligned_cols=307 Identities=14% Similarity=0.111 Sum_probs=164.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc
Q 008105 124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPD---TITYNMMVGGLCKR 200 (577)
Q Consensus 124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 200 (577)
...+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334556667777777777776653 22445566666666666777777666666665421111 13455556666666
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008105 201 GQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVL 280 (577)
Q Consensus 201 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 280 (577)
|++++|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..++...
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------------
Confidence 66666666666665432 33455555566666666666666666665554331111100
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 008105 281 DDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSP 360 (577)
Q Consensus 281 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 360 (577)
....+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+...
T Consensus 179 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 179 ----------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred ----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 00122334444445555555555555554432 1123344444555555555555555555555432221
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105 361 TVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLID 440 (577)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 440 (577)
...+++.++.+|.+.|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++.
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~ 323 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLD 323 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHH
Confidence 2334555666666666666666666666554 344444455666666666666666666665554 455556665555
Q ss_pred HHHh---cCCHHHHHHHHHHHHHCCCCCCHH
Q 008105 441 GLAK---KGCMEKAMVLYGQMMENGISPDDI 468 (577)
Q Consensus 441 ~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 468 (577)
.+.. .|+.+++..++++|.+.++.|++.
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5543 345666666666666555544443
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.5e-20 Score=188.63 Aligned_cols=298 Identities=15% Similarity=0.095 Sum_probs=148.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHccCCHHH
Q 008105 269 KQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPN---SITYNTLLHSLGSRGCWDA 345 (577)
Q Consensus 269 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~ 345 (577)
..|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|+++.
T Consensus 47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3444444444444444432 11233444444444444444444444444443321111 1233444444555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHH
Q 008105 346 VDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPD----IVTYNTVLGALCKEGMLNEALQLLH 421 (577)
Q Consensus 346 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 421 (577)
|..+|+.+.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...++
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555554432 23344455555555555555555555555554321111 1123344445555556666666665
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc
Q 008105 422 LLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMR 501 (577)
Q Consensus 422 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 501 (577)
++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|...|++++|.+.++++.+.. |+
T Consensus 205 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~ 281 (389)
T PRK11788 205 KALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PG 281 (389)
T ss_pred HHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC
Confidence 555432 223445555556666666666666666666543211113345556666666666666666666665542 34
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCcc
Q 008105 502 NSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVAD---DGMTEEAYKLWQKLIEWKVFEKGT 573 (577)
Q Consensus 502 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 573 (577)
...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++.++++.|++.
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 444455666666666666666666666542 4566566555555443 345666666666666655555443
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.9e-18 Score=182.53 Aligned_cols=432 Identities=14% Similarity=0.024 Sum_probs=286.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008105 119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLC 198 (577)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 198 (577)
.+......|.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3557788889999999999999998875 4677788888888999999999999999988875 345678888888999
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008105 199 KRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIE 278 (577)
Q Consensus 199 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 278 (577)
..|++++|..-|......+ ..+......++..+.. ..+........+.. +++...+..+.. +...........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchh
Confidence 9999999988887665443 1122222222222111 22333333333321 222223322222 222111111111
Q ss_pred HHHHHHHcCCCCCH-hhHHHHHHH---HHhcCCHHHHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 008105 279 VLDDMAIEGCSPDI-VTYNSLVNF---SCKQGKYDDAVLVINNLLSRG-MEP-NSITYNTLLHSLGSRGCWDAVDKILDI 352 (577)
Q Consensus 279 ~~~~~~~~~~~~~~-~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 352 (577)
-+.+.... .+.. ..+..+... ....+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...++.
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11111111 1111 111111111 123467888888888888764 223 344677777778888889999988888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 008105 353 MNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCL 432 (577)
Q Consensus 353 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 432 (577)
..+.. +.+...|..+...+...|++++|+..|++..+.. +.+...|..+...+...|++++|...|+...+.. +.+.
T Consensus 357 al~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~ 433 (615)
T TIGR00990 357 SIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFI 433 (615)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCH
Confidence 88764 2345677788888888889999998888887764 5567788888888888899999998888888765 4566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHH------HHH
Q 008105 433 ITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNS------AYR 506 (577)
Q Consensus 433 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~ 506 (577)
..+..+...+.+.|++++|+..|++..+.. +.+...++.+...+...|++++|.+.|++........+.. .++
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 777778888888889999999888887642 3356778888888888889999998888877643221111 112
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008105 507 LVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWK 567 (577)
Q Consensus 507 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (577)
.....+...|++++|.+++++..+.. +.+...+..+...+.+.|++++|.+++++..+..
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 22223344688888998888887543 2234567788888888999999988888887653
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=5.6e-20 Score=175.98 Aligned_cols=408 Identities=17% Similarity=0.160 Sum_probs=332.9
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 008105 125 QNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIR 204 (577)
Q Consensus 125 ~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 204 (577)
..+.+..+++....--....+. .+.-..+|..+.+.+-..|++++|+.+++.+++.. +..+..|..+..++...|+.+
T Consensus 90 ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~ 167 (966)
T KOG4626|consen 90 AIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLE 167 (966)
T ss_pred hhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCc
Confidence 4555666666665554444444 34467789999999999999999999999999875 346788999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHH-HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008105 205 SAIALLDEMSVSGCEPDVITYNT-ILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDM 283 (577)
Q Consensus 205 ~A~~~~~~~~~~g~~~~~~~~~~-li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 283 (577)
.|.+.|.+..+. .|+.....+ +...+-..|++++|...|.+.++.. +--.+.|+.|...+-..|++..|++-|++.
T Consensus 168 ~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eA 244 (966)
T KOG4626|consen 168 LAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEA 244 (966)
T ss_pred ccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHh
Confidence 999999988876 466554444 3444455899999999999888753 445678899999999999999999999999
Q ss_pred HHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 008105 284 AIEGCSPD-IVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPN-SITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPT 361 (577)
Q Consensus 284 ~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 361 (577)
.+. .|+ ...|-.|.+.|...+.+++|...+.+.... .|+ ...+..+...|..+|.+|.|...+++..+... .=
T Consensus 245 vkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F 319 (966)
T KOG4626|consen 245 VKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NF 319 (966)
T ss_pred hcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-Cc
Confidence 876 344 478889999999999999999999888766 444 45777788888999999999999999988652 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008105 362 VFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDG 441 (577)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 441 (577)
+..|+.|..++-..|++.+|.+.|++.+... +....+.+.|...|...|.+++|..+|....+-. +.-....+.|...
T Consensus 320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i 397 (966)
T KOG4626|consen 320 PDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASI 397 (966)
T ss_pred hHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHH
Confidence 5789999999999999999999999999874 5567788999999999999999999999887753 3345678899999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHH
Q 008105 442 LAKKGCMEKAMVLYGQMMENGISPD-DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDM 520 (577)
Q Consensus 442 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 520 (577)
|-++|++++|+..+++.++ +.|+ ...|+.+...|-..|+.+.|.+.+.+....+.. -...++.|...|-..|+..+
T Consensus 398 ~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 398 YKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred HHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHH
Confidence 9999999999999999987 5677 568999999999999999999999998875422 35677889999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 008105 521 AIQVLELMISSRYKPD-DTVFSTIVKKVAD 549 (577)
Q Consensus 521 A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~ 549 (577)
|++-+++.+ .++|| +..|..++.++.-
T Consensus 475 AI~sY~~aL--klkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 475 AIQSYRTAL--KLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHHHHHHH--ccCCCCchhhhHHHHHHHH
Confidence 999999998 45677 4566666665533
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=2.4e-18 Score=181.74 Aligned_cols=403 Identities=12% Similarity=0.013 Sum_probs=287.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008105 113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNM 192 (577)
Q Consensus 113 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 192 (577)
..|+...|..+..+|.+.|++++|++.++..++.. +.+...+..+..+|...|++++|+.-|......+...+. ....
T Consensus 156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~ 233 (615)
T TIGR00990 156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNE-QSAQ 233 (615)
T ss_pred cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccH-HHHH
Confidence 46788899999999999999999999999999874 347778999999999999999999999877655322222 2222
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH---HH
Q 008105 193 MVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPY-LITYTILIEQ---VC 268 (577)
Q Consensus 193 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~---~~ 268 (577)
++..+.. ..+........+.. +++...+..+.. +...........-+....+ ..+. ...+..+... ..
T Consensus 234 ~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~ 305 (615)
T TIGR00990 234 AVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESK 305 (615)
T ss_pred HHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcccc--cccccccchHHHHHHHHHhh
Confidence 2222222 12222233332221 222223332222 2221111222111111111 1111 1111111111 12
Q ss_pred HcCCHHHHHHHHHHHHHcC-CCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCCHHH
Q 008105 269 KQCGIARAIEVLDDMAIEG-CSP-DIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPN-SITYNTLLHSLGSRGCWDA 345 (577)
Q Consensus 269 ~~g~~~~A~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~ 345 (577)
..+++++|.+.|+.....+ ..| ....|+.+...+...|++++|+..+++..+. .|+ ...|..+...+...|++++
T Consensus 306 ~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~e 383 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDK 383 (615)
T ss_pred hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHH
Confidence 3478999999999998764 223 4467888888999999999999999999877 444 5578888888999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 008105 346 VDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNG 425 (577)
Q Consensus 346 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 425 (577)
|...++...+.. +.+...|..+...+...|++++|+..|++.++.. +.+...+..+...+.+.|++++|...++...+
T Consensus 384 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 461 (615)
T TIGR00990 384 AEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK 461 (615)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999998764 4467889999999999999999999999999875 55677888889999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 008105 426 SSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDI------THRTLIWGFCRADQVEEAVDLLKEIGKRGNK 499 (577)
Q Consensus 426 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 499 (577)
.. +.+...++.+...+...|++++|.+.|++..+..-..+.. .++.....+...|++++|.+++++....+.
T Consensus 462 ~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p- 539 (615)
T TIGR00990 462 NF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP- 539 (615)
T ss_pred hC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-
Confidence 64 5567889999999999999999999999998743111111 122222334456999999999999887642
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008105 500 MRNSAYRLVIHGLCKSKKVDMAIQVLELMISS 531 (577)
Q Consensus 500 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 531 (577)
.+...+..+...+.+.|++++|++.|++..+.
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 24557888999999999999999999999864
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=4.7e-18 Score=178.91 Aligned_cols=332 Identities=13% Similarity=0.060 Sum_probs=273.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008105 121 NKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKR 200 (577)
Q Consensus 121 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 200 (577)
.-++..+.+.|++++|..+++..+...+. +...+..++.+....|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 45678899999999999999999987544 56667777788888999999999999999875 45677888899999999
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008105 201 GQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVL 280 (577)
Q Consensus 201 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 280 (577)
|++++|.+.+++..+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 99999999999998763 4567888899999999999999999999887654 3344444444 3478899999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHHHHhC
Q 008105 281 DDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDA----VDKILDIMNEA 356 (577)
Q Consensus 281 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~ 356 (577)
+.+......++...+..+...+.+.|++++|...++++.+... .+...+..+...+...|++++ |...++...+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 9988764334445556667888999999999999999998752 356678888899999999985 89999999886
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 008105 357 SHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYN 436 (577)
Q Consensus 357 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 436 (577)
. +.+...+..+...+.+.|++++|+..+++..... +.+...+..+..++.+.|++++|...++.+...+ +.+...+.
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~ 356 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNR 356 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHH
Confidence 5 3477889999999999999999999999999874 4566778888999999999999999999988764 22233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 008105 437 TLIDGLAKKGCMEKAMVLYGQMMEN 461 (577)
Q Consensus 437 ~li~~~~~~g~~~~A~~~~~~m~~~ 461 (577)
.+..++...|+.++|...|++..+.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4567889999999999999999875
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=5.7e-18 Score=178.32 Aligned_cols=366 Identities=9% Similarity=-0.016 Sum_probs=288.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105 154 FCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMF 233 (577)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 233 (577)
-...++..+.+.|++++|..+++..+..... +...+..++......|++++|.+.|+++.+.. +.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3455677888999999999999999988644 44555556677778999999999999999874 556788889999999
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008105 234 DNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVL 313 (577)
Q Consensus 234 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 313 (577)
+.|++++|+..+++..... +.+...+..+...+...|+.++|...++.+...... +...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999998763 556788889999999999999999999988766422 33344333 34788999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHH
Q 008105 314 VINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDR----AINSFNQMV 389 (577)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~ 389 (577)
.++.+.+....++...+..+...+...|++++|...++...+.. +.+...+..+...+.+.|++++ |...|++..
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 99998877544455555666778889999999999999999875 4567888889999999999986 899999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-
Q 008105 390 SKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDI- 468 (577)
Q Consensus 390 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~- 468 (577)
+.. +.+...+..+...+.+.|++++|...+++..... +.+...+..+...+.+.|++++|...|+++.+. .|+..
T Consensus 278 ~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~ 353 (656)
T PRK15174 278 QFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSK 353 (656)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchH
Confidence 874 5577889999999999999999999999998875 555677888899999999999999999999875 35543
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHH----HHHHHHHhcCChHHHHHHHHHHH
Q 008105 469 THRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYR----LVIHGLCKSKKVDMAIQVLELMI 529 (577)
Q Consensus 469 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~ 529 (577)
.+..+..++...|+.++|.+.|++..+....-....|. .+-.++...+..++......++.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 34445678899999999999999987753221222332 33333444455544434444443
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=1.7e-17 Score=178.59 Aligned_cols=163 Identities=10% Similarity=0.013 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105 117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGG 196 (577)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 196 (577)
+....-.+......|+.++|++++.+..... +.+...+..+...+.+.|++++|.+++++.++.. +.+...+..+...
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~ 92 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344445566666677777776666665522 3344456666666666677777777776666553 3345555566666
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008105 197 LCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARA 276 (577)
Q Consensus 197 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 276 (577)
+...|++++|...++++.+.. +.+.. +..+...+...|+.++|+..++++.+.. |.+...+..+...+...+..++|
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHH
Confidence 666677777777776666552 33444 6666666666677777777766666542 33445555555566666666666
Q ss_pred HHHHHHHH
Q 008105 277 IEVLDDMA 284 (577)
Q Consensus 277 ~~~~~~~~ 284 (577)
++.++...
T Consensus 170 l~~l~~~~ 177 (765)
T PRK10049 170 LGAIDDAN 177 (765)
T ss_pred HHHHHhCC
Confidence 66665544
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=1.8e-17 Score=178.28 Aligned_cols=411 Identities=10% Similarity=-0.006 Sum_probs=308.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 008105 149 IPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTI 228 (577)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 228 (577)
+.+.....-.+......|+.++|++++.+..... +.+...+..+...+.+.|++++|.++|++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3455666667788889999999999999998633 4566678999999999999999999999988763 4567778888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 008105 229 LRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKY 308 (577)
Q Consensus 229 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 308 (577)
...+...|++++|+..++++.+. .|.+.. +..+...+...|+.++|...++++.+.. +.+...+..+...+...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 89999999999999999999876 355666 8888889999999999999999999874 33556667788888899999
Q ss_pred HHHHHHHHHHhhC-----CCCCCHHHHHHHHHHH-----HccCCH---HHHHHHHHHHHhC-CCCCCHH-HHH----HHH
Q 008105 309 DDAVLVINNLLSR-----GMEPNSITYNTLLHSL-----GSRGCW---DAVDKILDIMNEA-SHSPTVF-TYN----ILI 369 (577)
Q Consensus 309 ~~A~~~~~~m~~~-----g~~p~~~~~~~ll~~~-----~~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~li 369 (577)
++|++.++..... +...+ ....++... ...+++ ++|...++.+.+. ...|+.. .+. ..+
T Consensus 167 e~Al~~l~~~~~~p~~~~~l~~~--~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 167 APALGAIDDANLTPAEKRDLEAD--AAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHH--HHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 9999988866541 11111 122222222 223344 7788888888754 1122221 111 113
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhc
Q 008105 370 NGLCKYGLVDRAINSFNQMVSKNCQ-PDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSP---CLITYNTLIDGLAKK 445 (577)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~ 445 (577)
.++...|++++|+..|+++.+.+.+ |+. ....+..+|...|++++|...|+.+.+..... .......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 3456779999999999999887522 322 22235778999999999999999987653111 134566677788999
Q ss_pred CCHHHHHHHHHHHHHCC-----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 008105 446 GCMEKAMVLYGQMMENG-----------ISPD---DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHG 511 (577)
Q Consensus 446 g~~~~A~~~~~~m~~~g-----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 511 (577)
|++++|.++++++.+.. -.|+ ...+..+...+...|+.++|+++++++.... +.+...+..+...
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l 402 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASV 402 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 99999999999998642 1123 2345677788889999999999999998764 3357788889999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008105 512 LCKSKKVDMAIQVLELMISSRYKPD-DTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFE 570 (577)
Q Consensus 512 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 570 (577)
+...|++++|++.+++.++. .|+ ...+..++..+...|++++|+.+++++++..|..
T Consensus 403 ~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999864 455 6677777888999999999999999999965543
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=3.8e-16 Score=168.30 Aligned_cols=190 Identities=10% Similarity=-0.065 Sum_probs=127.1
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008105 373 CKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAM 452 (577)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 452 (577)
.+.|++++|...|+++... +|+...+..+..++.+.|+.++|...++...+.. +++...+..+.....+.|++++|.
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHH
Confidence 3556666666666655433 3333444455555666666666666666665543 222333333333344457788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008105 453 VLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSR 532 (577)
Q Consensus 453 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 532 (577)
..+++..+. .|+...+..+..++.+.|+.++|...+++...... .+...+..+..++...|++++|++.+++.++..
T Consensus 597 ~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 597 NDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 888777764 46777778888888888888888888888877642 255667777778888888888888888887632
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008105 533 YKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVF 569 (577)
Q Consensus 533 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (577)
+-+...+..+..++...|++++|+..+++.++..+.
T Consensus 674 -P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 674 -PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 335677788888888888888888888888875543
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=3.7e-16 Score=165.00 Aligned_cols=440 Identities=10% Similarity=-0.004 Sum_probs=323.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008105 122 KILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRG 201 (577)
Q Consensus 122 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 201 (577)
.-+-...+.|+++.|+..|++..+..+.-....+ .++..+...|+.++|+..+++..... .........+...|...|
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcC
Confidence 3344567899999999999999987433112334 88888889999999999999998211 223333444466888999
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008105 202 QIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLD 281 (577)
Q Consensus 202 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 281 (577)
++++|.++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 9999999999999875 446777888889999999999999999998765 4555556555445545666767999999
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH------HHHHHHH-----HccCCH---HHHH
Q 008105 282 DMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITY------NTLLHSL-----GSRGCW---DAVD 347 (577)
Q Consensus 282 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~------~~ll~~~-----~~~g~~---~~a~ 347 (577)
++.+.. +.+...+..+..++.+.|-...|.++..+-... +.+...-+ ..+++.- ....++ +.|.
T Consensus 194 kll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 194 EAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 999884 346777888899999999999998777653321 11111111 1111110 012233 3344
Q ss_pred HHHHHHHhC-C-CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 008105 348 KILDIMNEA-S-HSPTVFTY----NILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLH 421 (577)
Q Consensus 348 ~~~~~~~~~-~-~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 421 (577)
.-++.+... + .++....| .-.+-++.+.+++.++++.|+.+...+.+....+-..+.++|...+++++|..+++
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 444554442 1 12222222 23455778899999999999999988866566788899999999999999999999
Q ss_pred HHhhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHHhcCC
Q 008105 422 LLNGSS-----CSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGI-------------SPDDI-THRTLIWGFCRADQ 482 (577)
Q Consensus 422 ~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~-~~~~li~~~~~~g~ 482 (577)
.+.... .+++......|.-+|...+++++|..+++++.+... .||.. .+..++..+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 986643 133444467889999999999999999999987311 12222 23456677889999
Q ss_pred HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008105 483 VEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPD-DTVFSTIVKKVADDGMTEEAYKLWQ 561 (577)
Q Consensus 483 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 561 (577)
..+|++.++++.... +-|......+.+.+...|.+.+|++.++.... ..|+ ..+....+.++...|++++|..+.+
T Consensus 432 l~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~ 508 (822)
T PRK14574 432 LPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTD 508 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999998764 34888899999999999999999999977764 3554 5667788889999999999999999
Q ss_pred HHHHcCCCCC
Q 008105 562 KLIEWKVFEK 571 (577)
Q Consensus 562 ~~~~~~~~~~ 571 (577)
.+.+..|+..
T Consensus 509 ~l~~~~Pe~~ 518 (822)
T PRK14574 509 DVISRSPEDI 518 (822)
T ss_pred HHHhhCCCch
Confidence 9998666543
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=3.2e-17 Score=165.48 Aligned_cols=450 Identities=12% Similarity=0.058 Sum_probs=345.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008105 114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQI--PDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYN 191 (577)
Q Consensus 114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 191 (577)
..|+++.+.|.+.|.-.|++..+..+...+...... .-...|..+.++|-..|++++|...|.+..+....--+..+-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 457899999999999999999999999998876422 134458889999999999999999999998764222234455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008105 192 MMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNG----KFKQAIGFWKDQLRKGCPPYLITYTILIEQV 267 (577)
Q Consensus 192 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 267 (577)
-+..+|.+.|+++.+...|+++.+.. +-+..+...|...|+..+ ..+.|..++.+..+. .+.|...|-.+...+
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLL 424 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHH
Confidence 67899999999999999999998763 445677777777777664 456777777776665 366788888777766
Q ss_pred HHcCCHHHHHHHHHHHH----HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCCCH------HHHHHHH
Q 008105 268 CKQCGIARAIEVLDDMA----IEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSR---GMEPNS------ITYNTLL 334 (577)
Q Consensus 268 ~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~------~~~~~ll 334 (577)
-...- ..++..|..+. ..+..+.+...|.+.......|++++|...|...... ...+|. .+-..+.
T Consensus 425 e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 55444 44476665544 4455677889999999999999999999999998765 222333 2233345
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 008105 335 HSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLN 414 (577)
Q Consensus 335 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 414 (577)
...-..++.+.|.+.+..+.+.. +.-+..|-.++......+...+|...+++....+ ..++..++.+...+.+...+.
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhc
Confidence 56667789999999999998763 2233344445444445678899999999998764 667777888888899988999
Q ss_pred HHHHHHHHHhhCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008105 415 EALQLLHLLNGSS-CSPCLITYNTLIDGLAK------------KGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRAD 481 (577)
Q Consensus 415 ~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 481 (577)
.|.+-|..+.+.- ..+|..+.-+|.+.|.+ .+..++|+++|.+..+.. +-|...-|.+.-.++..|
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhcc
Confidence 8888777665432 23577777777775543 345788999999998763 457788889999999999
Q ss_pred CHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008105 482 QVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISS-RYKPDDTVFSTIVKKVADDGMTEEAYKLW 560 (577)
Q Consensus 482 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 560 (577)
++.+|..+|.+..+... -...+|-.+.++|...|++..|++.|+...+. ....+..+...|.+++.+.|++.+|.+.+
T Consensus 661 ~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred CchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999988643 24567888999999999999999999998763 44567889999999999999999999999
Q ss_pred HHHHHcCCCC
Q 008105 561 QKLIEWKVFE 570 (577)
Q Consensus 561 ~~~~~~~~~~ 570 (577)
.......|..
T Consensus 740 l~a~~~~p~~ 749 (1018)
T KOG2002|consen 740 LKARHLAPSN 749 (1018)
T ss_pred HHHHHhCCcc
Confidence 8888755443
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=2.5e-15 Score=162.06 Aligned_cols=429 Identities=12% Similarity=0.009 Sum_probs=266.4
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG 195 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 195 (577)
+..++..|.+.|.+.|++++|+..+++..+..+ -|...+.. +..+ +++++|.++++++.+.. +-+..++..+..
T Consensus 77 n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~-La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~ 150 (987)
T PRK09782 77 NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERS-LAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCR 150 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHH-HHHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHH
Confidence 467778888888888888888888888887632 23333333 3222 77888888888888774 233444444444
Q ss_pred H--------HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH-HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008105 196 G--------LCKRGQIRSAIALLDEMSVSGCEPDVITYNTI-LRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQ 266 (577)
Q Consensus 196 ~--------~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 266 (577)
. |.+. ++|.+.++ .......|+..+.... .+.|.+.+++++|++++.++.+.+ +.+......|...
T Consensus 151 ~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~a 225 (987)
T PRK09782 151 SEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDV 225 (987)
T ss_pred HhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4 5554 44444444 3322223345544444 888888999999999999998875 4456666777777
Q ss_pred HHH-cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHHHHHH------------
Q 008105 267 VCK-QCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGME-PNSITYNT------------ 332 (577)
Q Consensus 267 ~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~------------ 332 (577)
|.. .++ +++..+++. ..+.+...+..+...|.+.|+.++|.++++++...-.. |...++..
T Consensus 226 y~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~ 300 (987)
T PRK09782 226 LLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQA 300 (987)
T ss_pred HHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhh
Confidence 777 366 777777553 22357888899999999999999999999887643111 21111100
Q ss_pred ------------------HHHHHH--------------------------------------------------------
Q 008105 333 ------------------LLHSLG-------------------------------------------------------- 338 (577)
Q Consensus 333 ------------------ll~~~~-------------------------------------------------------- 338 (577)
++..+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~ 380 (987)
T PRK09782 301 LANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLD 380 (987)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHH
Confidence 011111
Q ss_pred -------ccCCHHHHHHHHHHHHhC-C-CCC-------------------------------------------------
Q 008105 339 -------SRGCWDAVDKILDIMNEA-S-HSP------------------------------------------------- 360 (577)
Q Consensus 339 -------~~g~~~~a~~~~~~~~~~-~-~~~------------------------------------------------- 360 (577)
+.|+.++|.+++...... + ...
T Consensus 381 q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (987)
T PRK09782 381 QLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADN 460 (987)
T ss_pred HHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhh
Confidence 223344444444333221 0 001
Q ss_pred ---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 008105 361 ---------------TVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNG 425 (577)
Q Consensus 361 ---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 425 (577)
+...|..+..++.. ++.++|+..+.+.... .|+......+...+.+.|++++|...++.+..
T Consensus 461 ~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 461 CPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 22222333333333 4445566655555544 24433333334444567778888777777654
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHH
Q 008105 426 SSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAY 505 (577)
Q Consensus 426 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 505 (577)
. +|+...+..+...+.+.|++++|...+++..+.. +++...+..+.......|++++|...+++..+.. |+...|
T Consensus 538 ~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~ 612 (987)
T PRK09782 538 H--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAY 612 (987)
T ss_pred c--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHH
Confidence 4 3444455566667777888888888888777653 2223333333344445688888888888887653 456777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008105 506 RLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVF 569 (577)
Q Consensus 506 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (577)
..+..++.+.|++++|+..+++.++.. +.+...+..+..++...|++++|+..+++.++..|.
T Consensus 613 ~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 613 VARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 788888888888888888888888542 334566777777888888888888888888886553
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=4.4e-15 Score=136.87 Aligned_cols=428 Identities=15% Similarity=0.189 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--CCHHH-HHHHHHHHHhCCCCCCHHHHHHH
Q 008105 117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRI--DRIEK-ASKVLQIMVMSGGVPDTITYNMM 193 (577)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~-A~~~~~~~~~~g~~~~~~~~~~l 193 (577)
+.+=|.|+++ ...|.++++.-+|+.|...|++.+...-..|++.-+-. .+.-- -.+.|-.|...| ..+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 4556666665 56789999999999999999888877776666544322 22211 123333333333 1122222
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008105 194 VGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGI 273 (577)
Q Consensus 194 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 273 (577)
+.|.+.+ ++-+.. +.+..++..+|.++++--..+.|.+++++......+.+..+||.+|.+-.-.
T Consensus 191 -----K~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~--- 255 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS--- 255 (625)
T ss_pred -----ccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh---
Confidence 1222222 222221 3344455555555555555555555555544444444555555544432211
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH----HHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHH-HHH
Q 008105 274 ARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDA----VLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDA-VDK 348 (577)
Q Consensus 274 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~ 348 (577)
...+++.+|....+.||..|+|+++....+.|+++.| .+++.+|++.|++|...+|..+|..+++.++..+ +..
T Consensus 256 -~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 256 -VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred -ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 1144445555544555555555555555555544332 3344455555555555555555555544444322 222
Q ss_pred HHHHHHhC----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCh
Q 008105 349 ILDIMNEA----S----HSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKN----CQPD---IVTYNTVLGALCKEGML 413 (577)
Q Consensus 349 ~~~~~~~~----~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~g~~ 413 (577)
++.++... . .+.+...|...+..|....+.+-|.++..-+.... +.|+ ..-|..+..+.|+....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 22222111 0 11233334444444444444444444433332210 1111 11233344444455555
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------------
Q 008105 414 NEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRAD------------ 481 (577)
Q Consensus 414 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g------------ 481 (577)
+.-...++.|..+-.-|+..+...++++..-.+.++-.-+++..++..|..-+...-..++..+++..
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~ 494 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQ 494 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 55555555555444445555555555555555555555555555544443222222222222222211
Q ss_pred --------CHHHH-HHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHH
Q 008105 482 --------QVEEA-VDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSR----YKPDDTVFSTIVKKVA 548 (577)
Q Consensus 482 --------~~~~A-~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~l~~~~~ 548 (577)
++.++ ..--.+|.+. .......++..-.+.+.|+.++|.+++....+++ ..|......-+++.-.
T Consensus 495 ~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~ 572 (625)
T KOG4422|consen 495 VAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAK 572 (625)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHH
Confidence 00000 1111122222 2234455666666677777777777777664422 2233333445555666
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 008105 549 DDGMTEEAYKLWQKLIEWK 567 (577)
Q Consensus 549 ~~g~~~~A~~~~~~~~~~~ 567 (577)
+......|...++-+...+
T Consensus 573 ~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 573 VSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred hcCCHHHHHHHHHHHHHcC
Confidence 6666777776666665443
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.3e-15 Score=153.96 Aligned_cols=446 Identities=13% Similarity=0.055 Sum_probs=334.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008105 119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLC 198 (577)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 198 (577)
.|--+.++|-..|+++.|...|.+..+....-....+.-+...+.+.|+++.+...|+.+.+.. +-+..+...|...|+
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYA 387 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHH
Confidence 4667889999999999999999998876432223444557899999999999999999999875 446677777888887
Q ss_pred hcC----ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHc
Q 008105 199 KRG----QIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQL----RKGCPPYLITYTILIEQVCKQ 270 (577)
Q Consensus 199 ~~g----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ 270 (577)
..+ ..+.|..++.+..+.- +.|...|-.+...+-... ...++..|.... ..+.++.+...|.+...+...
T Consensus 388 ~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~ 465 (1018)
T KOG2002|consen 388 HSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRL 465 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh
Confidence 765 5677888887777653 557788887777776544 444477776544 455568889999999999999
Q ss_pred CCHHHHHHHHHHHHHc---CCCCCH------hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHcc
Q 008105 271 CGIARAIEVLDDMAIE---GCSPDI------VTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSI-TYNTLLHSLGSR 340 (577)
Q Consensus 271 g~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~ 340 (577)
|+++.|...|+..... ...+|. .+-..+...+-..++.+.|.+.|..+.+. .|.-+ .|.-+.......
T Consensus 466 g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k 543 (1018)
T KOG2002|consen 466 GNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDK 543 (1018)
T ss_pred cChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhc
Confidence 9999999999998765 122333 22334556666778999999999999987 55544 333333333445
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh----------
Q 008105 341 GCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSK-NCQPDIVTYNTVLGALCK---------- 409 (577)
Q Consensus 341 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~---------- 409 (577)
+...+|...+......+ ..++..++.+...+.+...+.-|.+-|..+.+. ...+|+.+.-+|.+.|.+
T Consensus 544 ~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred cCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 77889999998887654 457777888888999999999998877777654 224677777777775553
Q ss_pred --cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008105 410 --EGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAV 487 (577)
Q Consensus 410 --~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 487 (577)
.+..++|+++|.+..+.. +.|...-|.+.-.++..|++.+|..+|.+.++... .+..+|..+.++|...|++..|.
T Consensus 623 k~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AI 700 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAI 700 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHH
Confidence 245778999999988876 77888889999999999999999999999998642 35567899999999999999999
Q ss_pred HHHHHHhh-CCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------------HH
Q 008105 488 DLLKEIGK-RGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKK------------------VA 548 (577)
Q Consensus 488 ~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~------------------~~ 548 (577)
++|+...+ ....-+......|.+++.+.|.+.+|.+.+.........-....|+..+-. ..
T Consensus 701 qmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~ 780 (1018)
T KOG2002|consen 701 QMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLE 780 (1018)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 99998665 455567888999999999999999999999888764322223333332211 12
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCc
Q 008105 549 DDGMTEEAYKLWQKLIEWKVFEKG 572 (577)
Q Consensus 549 ~~g~~~~A~~~~~~~~~~~~~~~~ 572 (577)
..+..+.|.++|..|...+..+-.
T Consensus 781 a~~~le~a~r~F~~ls~~~d~r~~ 804 (1018)
T KOG2002|consen 781 AVKELEEARRLFTELSKNGDKRIS 804 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCC
Confidence 234577888999999887766433
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=3.1e-14 Score=150.56 Aligned_cols=414 Identities=13% Similarity=0.065 Sum_probs=306.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008105 122 KILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRG 201 (577)
Q Consensus 122 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 201 (577)
.++..+...|+.++|+..+++..... ..+......+...+...|++++|+++|+++.+.. +.+...+..++..|...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcC
Confidence 88899999999999999999998321 1223333334568888899999999999999986 345677778889999999
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008105 202 QIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLD 281 (577)
Q Consensus 202 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 281 (577)
+.++|++.++++... .|+...+..++..+...++..+|++.++++.+.. |.+...+..+...+.+.|-...|.++..
T Consensus 151 q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 151 RGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred CHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 999999999999876 5666666555555555677767999999999874 6678888889999999999999998776
Q ss_pred HHHHcCCCCCHhhH------HHHHHHH---H--hcC---CHHHHHHHHHHHhhC-CCCCCHH-----HHHHHHHHHHccC
Q 008105 282 DMAIEGCSPDIVTY------NSLVNFS---C--KQG---KYDDAVLVINNLLSR-GMEPNSI-----TYNTLLHSLGSRG 341 (577)
Q Consensus 282 ~~~~~~~~~~~~~~------~~li~~~---~--~~g---~~~~A~~~~~~m~~~-g~~p~~~-----~~~~ll~~~~~~g 341 (577)
+-... +.+....+ ..+++.- . ... -.+.|+.-++.+... +..|... ...-.+-++...+
T Consensus 228 ~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~ 306 (822)
T PRK14574 228 ENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRH 306 (822)
T ss_pred hCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhh
Confidence 64322 11111111 1111110 0 111 234556666665542 2223322 2223455778899
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChhHH
Q 008105 342 CWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKN-----CQPDIVTYNTVLGALCKEGMLNEA 416 (577)
Q Consensus 342 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~~~~A 416 (577)
++.++.+.++.+...+.+....+-..+.++|...+++++|..+|+.+.... .+++......|.-++...+++++|
T Consensus 307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A 386 (822)
T PRK14574 307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA 386 (822)
T ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence 999999999999988866566688899999999999999999999997653 133444467889999999999999
Q ss_pred HHHHHHHhhCCC-------------CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008105 417 LQLLHLLNGSSC-------------SPCLI-TYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQ 482 (577)
Q Consensus 417 ~~~~~~~~~~~~-------------~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 482 (577)
..+++.+.+... .||-. .+..++..+...|++.+|++.++++.... +-|......+.+.+...|.
T Consensus 387 ~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 387 YQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDL 465 (822)
T ss_pred HHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 999999987321 11222 24456777889999999999999998753 5588899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008105 483 VEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVK 545 (577)
Q Consensus 483 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 545 (577)
+.+|.+.++...... +-+..+....+.++...|++++|..+.+...+. .|+......|-+
T Consensus 466 p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l~r 525 (822)
T PRK14574 466 PRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQELDR 525 (822)
T ss_pred HHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHHHH
Confidence 999999997776653 235666777888888999999999999998853 566554444443
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=2.5e-15 Score=139.29 Aligned_cols=426 Identities=14% Similarity=0.102 Sum_probs=279.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHH
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCIN-LIRGLIRIDRIEKASKVLQIMVMSGGVPD----TITYNM 192 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ 192 (577)
.+...|.+-|..+....+|+..++-+++...-||...... +.+.+.+...+.+|+++++..+..-+..+ ....+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 4456678888888899999999999988777777665533 55778888999999999988877532222 223455
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC------------CCHHHH
Q 008105 193 MVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCP------------PYLITY 260 (577)
Q Consensus 193 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~ 260 (577)
+.-.+.+.|+++.|...|+...+. .|+..+-..|+-++...|+-++..+.|.+|+..... |+....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 555678899999999999988776 588777666777777789999999999998764222 222222
Q ss_pred HHHH-----HHHHHcCC--HHHHHHHHHHHHHcCCCCCHh-------------hHH--------HHHHHHHhcCCHHHHH
Q 008105 261 TILI-----EQVCKQCG--IARAIEVLDDMAIEGCSPDIV-------------TYN--------SLVNFSCKQGKYDDAV 312 (577)
Q Consensus 261 ~~l~-----~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~-------------~~~--------~li~~~~~~g~~~~A~ 312 (577)
+.-+ .-.-+.+. .+++.-.--++..--+.|+-. .+. .-...+.++|+++.|.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 2211 11111111 111111111111111122210 000 1123577888888888
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHH------------------------------------HHHccCCHHHHHHHHHHHHhC
Q 008105 313 LVINNLLSRGMEPNSITYNTLLH------------------------------------SLGSRGCWDAVDKILDIMNEA 356 (577)
Q Consensus 313 ~~~~~m~~~g~~p~~~~~~~ll~------------------------------------~~~~~g~~~~a~~~~~~~~~~ 356 (577)
++++-..+..-+.....-+.|-. .....|+++.|.+.+++....
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 88877665532211111111111 112346777777777777654
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 008105 357 SHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYN 436 (577)
Q Consensus 357 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 436 (577)
........||. .-.+-+.|++++|++.|-++... +..+..+...+...|-...+...|.+++.+.... ++.|+....
T Consensus 520 dasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ils 596 (840)
T KOG2003|consen 520 DASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILS 596 (840)
T ss_pred chHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHH
Confidence 33322333333 22356678888888887766543 2346666777777787788888888887766554 466788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH-hc
Q 008105 437 TLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLC-KS 515 (577)
Q Consensus 437 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~ 515 (577)
-|...|-+.|+-.+|.+.+-+--+. ++-+..+...|...|....-+++++.+|++..- ++|+..-|..||..|. +.
T Consensus 597 kl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhc
Confidence 8888888888888887766554332 456778888888888888888889999888654 5788888888876655 58
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008105 516 KKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGM 552 (577)
Q Consensus 516 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 552 (577)
|++++|.++++...+ .++-|.....-|++.+...|.
T Consensus 674 gnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence 899999999988876 567788888888888888775
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=6.7e-13 Score=133.87 Aligned_cols=449 Identities=15% Similarity=0.111 Sum_probs=307.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105 114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMM 193 (577)
Q Consensus 114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 193 (577)
.|...-.-...+.+...|++++|.+++.++++.. +.+...|.+|...|-+.|+.+++...+-.+.... +.|...|..+
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~l 213 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRL 213 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 3444444455566667799999999999999985 4488899999999999999999998877776655 5577999999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHH
Q 008105 194 VGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTI----LIEQVCK 269 (577)
Q Consensus 194 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~ 269 (577)
.....+.|.+++|.-.|.+..+.. +++...+---...|-+.|+...|...|.++.....+.|..-+.. .+..+..
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999875 55655556667788999999999999999998753333333333 3455666
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH------------------
Q 008105 270 QCGIARAIEVLDDMAIEG-CSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITY------------------ 330 (577)
Q Consensus 270 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~------------------ 330 (577)
.++-+.|.+.++.....+ -..+...++.++..+.+...++.|......+.....++|..-|
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 777799999998887632 2335567889999999999999999888887762222222211
Q ss_pred --------HHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008105 331 --------NTLLHSLGSRGCWDAVDKILDIMNEAS--HSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTY 400 (577)
Q Consensus 331 --------~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 400 (577)
.-+.-++......+....+.....+.. +..+...|.-+..+|.+.|++.+|+.+|..+......-+...|
T Consensus 373 ~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 373 ELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 112223334444455555555555554 3335566777788888888888888888888876555567788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHHHHH
Q 008105 401 NTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMME--------NGISPDDITHRT 472 (577)
Q Consensus 401 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~~~~~ 472 (577)
-.+..+|...|.+++|...++...... +.+...--.|...+-+.|+.++|.+.+..+.. .+..|+......
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~ 531 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAH 531 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHH
Confidence 888888888888888888888877664 44455555666777788888888888887542 123333333334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC--------------------------------------------------------
Q 008105 473 LIWGFCRADQVEEAVDLLKEIGKR-------------------------------------------------------- 496 (577)
Q Consensus 473 li~~~~~~g~~~~A~~~~~~m~~~-------------------------------------------------------- 496 (577)
..+.+...|+.++=......|+..
T Consensus 532 r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~ 611 (895)
T KOG2076|consen 532 RCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTE 611 (895)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhh
Confidence 444455555554432222222110
Q ss_pred -------CCCccH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008105 497 -------GNKMRN--SAYRLVIHGLCKSKKVDMAIQVLELMISSRY--KPDD---TVFSTIVKKVADDGMTEEAYKLWQK 562 (577)
Q Consensus 497 -------~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 562 (577)
++..+. ..+..++..+++.+++++|..+...+..... .++. ..-...+.+....+++..|...+..
T Consensus 612 ~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~ 691 (895)
T KOG2076|consen 612 FRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRS 691 (895)
T ss_pred hhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 111110 1245567778888888888888888876421 2222 2234456677888888888888888
Q ss_pred HHHc
Q 008105 563 LIEW 566 (577)
Q Consensus 563 ~~~~ 566 (577)
|+..
T Consensus 692 ~i~~ 695 (895)
T KOG2076|consen 692 VITQ 695 (895)
T ss_pred HHHH
Confidence 7754
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1.7e-13 Score=126.55 Aligned_cols=238 Identities=17% Similarity=0.216 Sum_probs=135.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105 151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILR 230 (577)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 230 (577)
+..++..+|.++|+-...+.|.+++++-.....+.+..+||.+|.+-.-.. ..+++.+|......||..|+|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHH
Confidence 455666666666666666666666666655555666666666665433211 1556666666555666666666666
Q ss_pred HHHhCCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHH----HcCCCC----CHhhHHH
Q 008105 231 TMFDNGKFKQ----AIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR-AIEVLDDMA----IEGCSP----DIVTYNS 297 (577)
Q Consensus 231 ~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~----~~~~~~----~~~~~~~ 297 (577)
+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ |..++.++. .+.++| |..-|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 6666665543 34455556666666666666666666666655433 233333322 222222 3344455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCC----CCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105 298 LVNFSCKQGKYDDAVLVINNLLSRG----MEPN---SITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILIN 370 (577)
Q Consensus 298 li~~~~~~g~~~~A~~~~~~m~~~g----~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 370 (577)
.+..|.+..+.+-|.++..-+.... +.|+ .+-|..+....|.....+.....++.|.-+-+-|+..+...++.
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 5666666666666665554443221 1222 22445555666666666666777777666555566666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC
Q 008105 371 GLCKYGLVDRAINSFNQMVSKN 392 (577)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~~ 392 (577)
+..-.|.++-.-+++.++...|
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhh
Confidence 6666666666666666665544
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=3.3e-12 Score=124.19 Aligned_cols=435 Identities=11% Similarity=0.027 Sum_probs=261.1
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105 115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV 194 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 194 (577)
.++..|...+ ...+.++|+.++.+..+. ++.+.. |..+|++..-|+.|.+++....+. ++.+...|.+-.
T Consensus 378 ~sv~LWKaAV----elE~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa 447 (913)
T KOG0495|consen 378 RSVRLWKAAV----ELEEPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAA 447 (913)
T ss_pred chHHHHHHHH----hccChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHH
Confidence 3455554433 334555666666666664 222323 333455555566666666666553 345556665555
Q ss_pred HHHHhcCChHHHHHHHHHH----hhCCCCCCHHH-------------------------------------HHHHHHHHH
Q 008105 195 GGLCKRGQIRSAIALLDEM----SVSGCEPDVIT-------------------------------------YNTILRTMF 233 (577)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~~----~~~g~~~~~~~-------------------------------------~~~li~~~~ 233 (577)
..--.+|+.+...+++++- ...|+..+... |+.-...|.
T Consensus 448 ~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~ 527 (913)
T KOG0495|consen 448 KLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCE 527 (913)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHH
Confidence 5555566665555555432 23344444443 444444445
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008105 234 DNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVL 313 (577)
Q Consensus 234 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 313 (577)
+.+.++-|..+|...++. .+-+...|......--..|..+.-..+|++.... ++.....|-.....+-..|++..|+.
T Consensus 528 k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~ 605 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARV 605 (913)
T ss_pred hcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHH
Confidence 555555555555555543 2334444554444444556666666666666654 23344556666666667777777777
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 008105 314 VINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNC 393 (577)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 393 (577)
++.+..+.... +...|-+-+..-....+++.|..+|.+....+ |+..+|.--+..-.-.+..++|++++++.++. +
T Consensus 606 il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~s--gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-f 681 (913)
T KOG0495|consen 606 ILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSIS--GTERVWMKSANLERYLDNVEEALRLLEEALKS-F 681 (913)
T ss_pred HHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccC--CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-C
Confidence 77777766422 45567777777777777888888877776543 56666666666666667778888887777765 2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008105 394 QPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTL 473 (577)
Q Consensus 394 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 473 (577)
+.-...|..+.+.+-+.++.+.|...|..-.+. ++.....|-.|...--+.|.+-+|..++++..-.+ +-+...|...
T Consensus 682 p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~ 759 (913)
T KOG0495|consen 682 PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLES 759 (913)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHH
Confidence 333445566666677777777777776655443 34455567777666677778888888888877654 3467778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCC-----------------------------CCccHHHHHHHHHHHHhcCChHHHHHH
Q 008105 474 IWGFCRADQVEEAVDLLKEIGKRG-----------------------------NKMRNSAYRLVIHGLCKSKKVDMAIQV 524 (577)
Q Consensus 474 i~~~~~~g~~~~A~~~~~~m~~~~-----------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~ 524 (577)
|.+-.+.|+.+.|..+..+..+.- ..-|+...-.+...+....++++|.+.
T Consensus 760 Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~W 839 (913)
T KOG0495|consen 760 IRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREW 839 (913)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877776665431 112333344455555566666777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105 525 LELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKV 568 (577)
Q Consensus 525 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (577)
|.+.++.+ +.+..+|.-+.+-+.++|.-++-.+++++.....|
T Consensus 840 f~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 840 FERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 77766432 22356666666666777766666666666655433
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=7.7e-12 Score=117.25 Aligned_cols=440 Identities=12% Similarity=0.089 Sum_probs=324.7
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG 195 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 195 (577)
+...|-...+-=..++++..|.++|++++... ..+...|...+.+=.+...+..|..+++..+..-+..| ..|--.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHH
Confidence 44556666666677888899999999999875 44777888888888899999999999999987643333 34555666
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008105 196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR 275 (577)
Q Consensus 196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 275 (577)
+=-..|++.-|.++|++-..- .|+...|++.|..-.+-+..+.|..+|++.+- +.|+..+|--....-.+.|++..
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHH
Confidence 666789999999999988765 79999999999999999999999999999875 46999999988888889999999
Q ss_pred HHHHHHHHHHc-C-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCCHHHHHHH---
Q 008105 276 AIEVLDDMAIE-G-CSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPN-SITYNTLLHSLGSRGCWDAVDKI--- 349 (577)
Q Consensus 276 A~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~--- 349 (577)
|..+|+...+. | -..+...+.+....=.++..++.|.-+|+-.+++=.+-. ...|..+...=-+-|+.......
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 99999887763 1 011223455555555577888999999988887622211 22344444333445655444433
Q ss_pred -----HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH--------HHHhcCChh
Q 008105 350 -----LDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIV--TYNTVLG--------ALCKEGMLN 414 (577)
Q Consensus 350 -----~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~--------~~~~~g~~~ 414 (577)
++.+.+.+ +.|..+|--.+..-...|+.+...++|++.+.. ++|-.. .|...|- .-....+.+
T Consensus 306 KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 306 KRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 23344333 457778888888888889999999999998876 355221 1211111 112457888
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008105 415 EALQLLHLLNGSSCSPCLITYNTLIDGL----AKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLL 490 (577)
Q Consensus 415 ~A~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 490 (577)
.+.++++...+. ++....||.-+--.| .++.++..|.+++...+ |.-|...+|...|..-.+.++++.+..++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 889999888773 455666766554444 46788899999988876 45688889999999888999999999999
Q ss_pred HHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008105 491 KEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRY-KPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWK 567 (577)
Q Consensus 491 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (577)
++..+.+.. +..+|......-...|+.+.|..+|+-+++.+. ......|.+.++--...|.++.|..+++++++..
T Consensus 461 Ekfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 461 EKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 999887633 777888888878888999999999998886432 1224556777777788899999999999998754
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1.8e-11 Score=114.74 Aligned_cols=438 Identities=13% Similarity=0.067 Sum_probs=328.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105 114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMM 193 (577)
Q Consensus 114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 193 (577)
..+...|-..+.+=.++.....|+.++++.+..-+. -...|...+..=-..|++..|.++|+...+- .|+...|++.
T Consensus 104 ~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sf 180 (677)
T KOG1915|consen 104 YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSF 180 (677)
T ss_pred cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHH
Confidence 356788999999999999999999999999986333 3344666666667789999999999999865 8999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHcC
Q 008105 194 VGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRK-G-CPPYLITYTILIEQVCKQC 271 (577)
Q Consensus 194 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g 271 (577)
|+.=.+...++.|..++++..-. .|++.+|--..+.-.++|+...|..+|+...+. | -..+...+.+....-.++.
T Consensus 181 I~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qk 258 (677)
T KOG1915|consen 181 IKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQK 258 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998865 699999999999999999999999999988764 1 1112333444444445677
Q ss_pred CHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCCH---HHHHH-----HHHHHhhCCCCCCHHHHHHHHHHHHccC
Q 008105 272 GIARAIEVLDDMAIEGCSPD--IVTYNSLVNFSCKQGKY---DDAVL-----VINNLLSRGMEPNSITYNTLLHSLGSRG 341 (577)
Q Consensus 272 ~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~---~~A~~-----~~~~m~~~g~~p~~~~~~~ll~~~~~~g 341 (577)
.++.|.-+|+-.+.. ++.+ ...|..+...=-+-|+. ++++- -++.+.+.+ +.|-.+|-..++.-...|
T Consensus 259 E~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 259 EYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVG 336 (677)
T ss_pred HHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcC
Confidence 789999999888765 2222 34455554444444553 33332 244444443 446678888888888899
Q ss_pred CHHHHHHHHHHHHhCCCCCCH--HHHHHHHHH--------HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----
Q 008105 342 CWDAVDKILDIMNEASHSPTV--FTYNILING--------LCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGAL---- 407 (577)
Q Consensus 342 ~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~---- 407 (577)
+.+...++++.....- +|-. ..|...|-. =....+.+.+.++|+..++. ++....||.-+--.|
T Consensus 337 ~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 337 DKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred CHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHH
Confidence 9999999999998763 3321 122222211 12468899999999999885 555666766654444
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008105 408 CKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAV 487 (577)
Q Consensus 408 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 487 (577)
.++.++..|.+++..... ..|...+|...|..-.+.++++.+..++++.++.+ +-+..+|......-...|+.+.|.
T Consensus 415 IRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaR 491 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRAR 491 (677)
T ss_pred HHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHH
Confidence 467899999999988775 47888999999999999999999999999999975 346788888888888899999999
Q ss_pred HHHHHHhhCC-CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcC----------
Q 008105 488 DLLKEIGKRG-NKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVA-----DDG---------- 551 (577)
Q Consensus 488 ~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-----~~g---------- 551 (577)
.+|+-..... .......|...|+--...|.++.|..+++++++. .+...+|.++..--. +.|
T Consensus 492 aifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~ 569 (677)
T KOG1915|consen 492 AIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITD 569 (677)
T ss_pred HHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcch
Confidence 9999987642 3334567888888888999999999999999964 344556766654332 334
Q ss_pred -CHHHHHHHHHHHHH
Q 008105 552 -MTEEAYKLWQKLIE 565 (577)
Q Consensus 552 -~~~~A~~~~~~~~~ 565 (577)
....|..+|++...
T Consensus 570 ~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 570 ENIKRARKIFERANT 584 (677)
T ss_pred hHHHHHHHHHHHHHH
Confidence 45677777777643
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=1.7e-11 Score=119.40 Aligned_cols=387 Identities=12% Similarity=0.066 Sum_probs=273.6
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 008105 148 QIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVP--DTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITY 225 (577)
Q Consensus 148 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 225 (577)
+..+...|..=...|-+.|-.-.+..+....+..|+.- -..+|+.-.+.|.+.+.++-|..+|....+.- +.+...|
T Consensus 475 v~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slW 553 (913)
T KOG0495|consen 475 VEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLW 553 (913)
T ss_pred eeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHH
Confidence 33333333333333333333333333444333333221 12345555566667777777777777776552 4466677
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 008105 226 NTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQ 305 (577)
Q Consensus 226 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 305 (577)
......--..|..++...+|++.... ++.....|......+...|++..|..++..+.... +.+...|-..+..-...
T Consensus 554 lra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en 631 (913)
T KOG0495|consen 554 LRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFEN 631 (913)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhcc
Confidence 77776666788888888888888865 56667777777778888899999999998888764 33677888888888889
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008105 306 GKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSF 385 (577)
Q Consensus 306 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 385 (577)
.+++.|..+|.+.... .|+...|.--+..---.+..++|.+++++..+. ++.-...|-.+.+.+-+.++.+.|.+.|
T Consensus 632 ~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 632 DELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAY 708 (913)
T ss_pred ccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999888765 566666666566556678889999998888775 2334456777788888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 008105 386 NQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMEN---- 461 (577)
Q Consensus 386 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 461 (577)
..-.+. ++..+..|..+...--+.|.+-.|..+++...-++ +.+...|-..|++-.+.|..+.|..+..+..+.
T Consensus 709 ~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 709 LQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred Hhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 766554 45566677777777777888888888888887765 677888888888888888888888777665542
Q ss_pred C-------------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcC
Q 008105 462 G-------------------------ISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSK 516 (577)
Q Consensus 462 g-------------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 516 (577)
| ..-|+.....+...+....+++.|.+.|.+.++.+.. +..+|..+...+.++|
T Consensus 787 g~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 787 GLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHG 865 (913)
T ss_pred chhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhC
Confidence 1 1124444555666667778899999999999987633 5678988999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 008105 517 KVDMAIQVLELMISSRYKPD-DTVFSTIVK 545 (577)
Q Consensus 517 ~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~ 545 (577)
.-++-.+++...... .|. ...|.++-+
T Consensus 866 ~eed~kev~~~c~~~--EP~hG~~W~avSK 893 (913)
T KOG0495|consen 866 TEEDQKEVLKKCETA--EPTHGELWQAVSK 893 (913)
T ss_pred CHHHHHHHHHHHhcc--CCCCCcHHHHHhh
Confidence 999999999988753 454 344555443
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=4e-12 Score=128.41 Aligned_cols=396 Identities=15% Similarity=0.108 Sum_probs=223.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105 154 FCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMF 233 (577)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 233 (577)
......+.+...|++++|.+++.++++.. +.....|..|...|-..|+.+++...+-...... +.|...|..+.....
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 33333444445588888888888887775 4566777888888888888888777665554443 556677887777778
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhH----HHHHHHHHhcCCHH
Q 008105 234 DNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTY----NSLVNFSCKQGKYD 309 (577)
Q Consensus 234 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~ 309 (577)
+.|++++|.-+|.+.++.. |++...+---...|-+.|+...|.+-|.++.....+.|..-. -..+..+...++.+
T Consensus 219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 8888888888888877764 555555555566777778888888888877765322222222 22345566666667
Q ss_pred HHHHHHHHHhhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008105 310 DAVLVINNLLSR-GMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQM 388 (577)
Q Consensus 310 ~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 388 (577)
.|.+.++..... +-..+...++.++..+.+...++.+......+......+|..-|..- .+ ++ .-+...
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----~~-~~-----~~~~~~ 367 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----ER-RR-----EEPNAL 367 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----hh-cc-----cccccc
Confidence 777777766652 12234446667777777777777777666666553333332222100 00 00 000000
Q ss_pred H--HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008105 389 V--SKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSS--CSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGIS 464 (577)
Q Consensus 389 ~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 464 (577)
. ..+..++..++ .+.-++......+....+........ +..+...|.-+..+|...|++.+|..+|..+......
T Consensus 368 ~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 368 CEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred ccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 0 01122222221 11222233333333333333333333 2334455666666666666666666666666654333
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH--------CCCCCC
Q 008105 465 PDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS--------SRYKPD 536 (577)
Q Consensus 465 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~p~ 536 (577)
-+...|-.+..+|...|.+++|.+.++....... .+...--.|...+-+.|+.++|.+.++.+.. .+..|+
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e 525 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPE 525 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHH
Confidence 3455666666666666666666666666665321 1233334455556666666666666666431 234455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105 537 DTVFSTIVKKVADDGMTEEAYKLWQKLI 564 (577)
Q Consensus 537 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 564 (577)
........+.+...|+.++-......|+
T Consensus 526 ~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 526 RRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5555556666667777666555444443
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=2.7e-12 Score=127.66 Aligned_cols=284 Identities=10% Similarity=0.015 Sum_probs=186.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHccCCHHHH
Q 008105 270 QCGIARAIEVLDDMAIEGCSPDIVT-YNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYN--TLLHSLGSRGCWDAV 346 (577)
Q Consensus 270 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~a 346 (577)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666666665544431 11222 222233446677777777777777654 34433222 224556667777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChhHHHHH
Q 008105 347 DKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDI-------VTYNTVLGALCKEGMLNEALQL 419 (577)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~ 419 (577)
...++.+.+.. |.++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777776665 345666677777777777777777777777766533222 1223333333344455566666
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 008105 420 LHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNK 499 (577)
Q Consensus 420 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 499 (577)
++.+.+. .+.+......+...+...|+.++|.+++++..+. .||.... ++.+....++.+++.+..+...+...
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P- 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG- 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC-
Confidence 6665443 2556777788888888888888888888888774 4555322 23333455888888888888877542
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105 500 MRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEW 566 (577)
Q Consensus 500 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (577)
-|...+.++...+.+.|++++|.+.|+.+.+ ..|+...+..+...+.+.|+.++|.+++++-+..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3556677888888889999999999988885 4688888888888899999999998888877653
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.8e-11 Score=114.69 Aligned_cols=365 Identities=13% Similarity=0.026 Sum_probs=242.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHH-HH
Q 008105 149 IPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPD-VIT-YN 226 (577)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~-~~ 226 (577)
..|...+......+.+.|....|+..|...+..- +..-..|..|.+.. -+.+. ...... |.+.| ... =-
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~----~~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEI----LSILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHH----HHHHHh-cCcccchHHHHH
Confidence 3455545555555667777888888877776432 22333333333222 22222 222221 11211 111 11
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHhhHHHHHHHHHh
Q 008105 227 TILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCS--PDIVTYNSLVNFSCK 304 (577)
Q Consensus 227 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~ 304 (577)
-+..++......+++++-.+.....|.+-+...-+....+.....++++|..+|+++.+...- -|..+|+.++- .+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HH
Confidence 234455566677888888888887777666655555555666778899999999998876311 15567776663 33
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008105 305 QGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINS 384 (577)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 384 (577)
+.+..- .++.+-...--+--..|...+.+.|+-.++.+.|...|++..+.+. .....|+.+..-|....+...|++.
T Consensus 310 ~~~skL--s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDKSKL--SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhhHHH--HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHH
Confidence 332221 1221111111123345777778888888899999999999888763 3567788888899999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008105 385 FNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGIS 464 (577)
Q Consensus 385 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 464 (577)
++..++.+ +.|-..|-.+.++|.-.+...-|+-.|++...-. +.|...|.+|..+|.+.++.++|++.|.+....|-
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d- 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD- 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-
Confidence 99988875 6788889999999999999999999998888764 66888999999999999999999999999887652
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCcc--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105 465 PDDITHRTLIWGFCRADQVEEAVDLLKEIGK----RGNKMR--NSAYRLVIHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 465 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 530 (577)
.+...+..|...|-+.++.++|...|++-++ .|...+ ...-..|..-+.+.+++++|..+......
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 3557888888999999999999888887654 232212 12222345556677888888776665543
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=3.4e-12 Score=127.01 Aligned_cols=282 Identities=11% Similarity=0.017 Sum_probs=155.1
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHH
Q 008105 200 RGQIRSAIALLDEMSVSGCEPDVITYN-TILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYT--ILIEQVCKQCGIARA 276 (577)
Q Consensus 200 ~g~~~~A~~~~~~~~~~g~~~~~~~~~-~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A 276 (577)
.|+++.|.+.+....+.+ +++..+. .......+.|+++.|.+.+.++.+. .|+..... .....+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666665555544331 1222222 2223335566666666666666543 33332211 224455566666666
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHccCCHHHHHHH
Q 008105 277 IEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNS-------ITYNTLLHSLGSRGCWDAVDKI 349 (577)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~a~~~ 349 (577)
.+.++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66666665553 224455556666666666666666666666655433211 1222222222233344444455
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 008105 350 LDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCS 429 (577)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 429 (577)
++.+.+. .+.++.....+...+...|+.++|.+.+++..+. +|+.... ++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 5444332 2345666666677777777777777777766663 3444221 2233334466777777776666554 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105 430 PCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIG 494 (577)
Q Consensus 430 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 494 (577)
.|...+..+...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45556666677777777777777777777663 4676666677777777777777777776654
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=8.3e-13 Score=122.81 Aligned_cols=402 Identities=15% Similarity=0.120 Sum_probs=273.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHhhCCCCCC------HHHHHHHH
Q 008105 157 NLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITY-NMMVGGLCKRGQIRSAIALLDEMSVSGCEPD------VITYNTIL 229 (577)
Q Consensus 157 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~------~~~~~~li 229 (577)
.|..-|....-..+|+..++-+++...-|+.-.. -.+.+.+.+...+.+|++.++..... .|+ ....+.+.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil~nig 283 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhcC
Confidence 3455566667788899999999887666665443 23456788889999999999877654 232 33445555
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------------CCHhhHHH
Q 008105 230 RTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCS------------PDIVTYNS 297 (577)
Q Consensus 230 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~~ 297 (577)
-.+.+.|.++.|+..|+...+. .||..+-..|+-.+..-|+-++..+.|.+|...-.. |+....+.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 6678899999999999998875 578777666777777789999999999999764222 33333332
Q ss_pred HHH-----HHHhcCC--HHHHHHHHHHHhhCCCCCCHHH---H----------H--------HHHHHHHccCCHHHHHHH
Q 008105 298 LVN-----FSCKQGK--YDDAVLVINNLLSRGMEPNSIT---Y----------N--------TLLHSLGSRGCWDAVDKI 349 (577)
Q Consensus 298 li~-----~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~---~----------~--------~ll~~~~~~g~~~~a~~~ 349 (577)
.|. -.-+..+ .++++-.--++..--+.|+-.. | . .-..-+.+.|+++.|.++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 221 1212211 1222222222222222232110 0 0 012357899999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHH------------------------------------HHHHHcCCHHHHHHHHHHHHHCCC
Q 008105 350 LDIMNEASHSPTVFTYNILI------------------------------------NGLCKYGLVDRAINSFNQMVSKNC 393 (577)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~li------------------------------------~~~~~~g~~~~A~~~~~~m~~~~~ 393 (577)
+.-+.+...+.-...-+.|- +.....|++++|.+.|++.+..+.
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 98876543221111111100 001135789999999999886532
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008105 394 QPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTL 473 (577)
Q Consensus 394 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 473 (577)
.-....|+ +.-.+-..|++++|++.|-.+... +..+..+...+.+.|-...+..+|++++.+.... ++.|+.....|
T Consensus 522 sc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl 598 (840)
T KOG2003|consen 522 SCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKL 598 (840)
T ss_pred HHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHH
Confidence 21222222 233466789999999998766543 2346777788888899999999999999877653 56678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCC
Q 008105 474 IWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVK-KVADDGM 552 (577)
Q Consensus 474 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~g~ 552 (577)
...|-+.|+-..|.+.+-+--+. ++-+..+...+..-|....-+++|+.+|++.. -++|+..-|..++. ++.+.|+
T Consensus 599 ~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhccc
Confidence 99999999999998887655443 45578888888888999999999999999986 57999999998775 5677999
Q ss_pred HHHHHHHHHHHHHcCC
Q 008105 553 TEEAYKLWQKLIEWKV 568 (577)
Q Consensus 553 ~~~A~~~~~~~~~~~~ 568 (577)
++.|..+++..-.+-|
T Consensus 676 yqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 676 YQKAFDLYKDIHRKFP 691 (840)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999998876433
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=7.8e-11 Score=110.48 Aligned_cols=365 Identities=12% Similarity=0.024 Sum_probs=254.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHH
Q 008105 184 VPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLI--TYT 261 (577)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~ 261 (577)
..|.+.+-.....+-+.|....|...|.+.... -+..|.+.+....-..+.+.+ .... .+.+.|.. .--
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~----~~l~-~~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEIL----SILV-VGLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHH----HHHH-hcCcccchHHHHH
Confidence 445554444445555677777777777766633 122233322222111222222 1111 12222211 111
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHc
Q 008105 262 ILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGME--PNSITYNTLLHSLGS 339 (577)
Q Consensus 262 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~ 339 (577)
-+..++-...+.+++.+-.+.....|++-+...-+....+.....++++|+.+|+++.+..+- -|..+|+.++-.-..
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 233456666688888888888888887766666566666777889999999999999987311 255677777644332
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 008105 340 RGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQL 419 (577)
Q Consensus 340 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 419 (577)
...+.-.......+. +--+.|...+.+-|+-.++.+.|...|++.++.+ +.....|+.+.+-|....+...|..-
T Consensus 312 ~skLs~LA~~v~~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hHHHHHHHHHHHHhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 222211111111121 2344577788888999999999999999999986 56778899999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 008105 420 LHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNK 499 (577)
Q Consensus 420 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 499 (577)
++...+.. +.|-..|-.|.++|.-.+...-|+-.|++..... +-|...|.+|..+|.+.++.++|.+.|......| +
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 99999876 7789999999999999999999999999998752 4578999999999999999999999999998866 3
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105 500 MRNSAYRLVIHGLCKSKKVDMAIQVLELMIS----SRYKPD--DTVFSTIVKKVADDGMTEEAYKLWQKLIE 565 (577)
Q Consensus 500 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (577)
.+...+..+.+.+-+.++..+|...+++.++ .|...+ .....-|..-+.+.+++++|..+......
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 3678899999999999999999999988775 233322 12222255567788888888776655544
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=3.4e-12 Score=127.74 Aligned_cols=291 Identities=12% Similarity=0.027 Sum_probs=181.8
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 008105 268 CKQCGIARAIEVLDDMAIEGCSPDI-VTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAV 346 (577)
Q Consensus 268 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 346 (577)
...|+++.|.+.+.+..+. .|+. ..+-....+..+.|+.+.|.+.+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3456777777776665554 2332 223333455666677777777777766542222222333345566667777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCChhHHHHHHHH
Q 008105 347 DKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYN-TVLGAL---CKEGMLNEALQLLHL 422 (577)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~---~~~g~~~~A~~~~~~ 422 (577)
...++.+.+.. |.+...+..+...+.+.|++++|.+.+..+.+.+.. +...+. ....++ ...+..+++...+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 77777777664 335566677777777777777777777777776533 222221 111111 222222222233333
Q ss_pred HhhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105 423 LNGSS---CSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDIT---HRTLIWGFCRADQVEEAVDLLKEIGKR 496 (577)
Q Consensus 423 ~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 496 (577)
+.+.. .+.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 33321 12367778888888888888888888888888753 44331 111122223457778888888887764
Q ss_pred CCCccH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105 497 GNKMRN--SAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIE 565 (577)
Q Consensus 497 ~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (577)
.. -|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 329 ~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VD-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CC-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 233 556788888999999999999999544335578988888999999999999999999988754
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=5.4e-12 Score=126.25 Aligned_cols=132 Identities=11% Similarity=-0.051 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHH
Q 008105 326 NSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFT-YNILINGLCKYGLVDRAINSFNQMVSKNCQPDI--VTYNT 402 (577)
Q Consensus 326 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ 402 (577)
+...+..+...+...|+.++|.+++++..+......... .....-.....++.+.+.+.++...+.. +-|+ ....+
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~s 340 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRA 340 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHH
Confidence 344444455555555555555555555554321111000 0111111122344555555555555442 2233 34445
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105 403 VLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQM 458 (577)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 458 (577)
+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 341 LGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55556666666666666663322223455555556666666666666666666654
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=8.5e-15 Score=139.15 Aligned_cols=261 Identities=18% Similarity=0.211 Sum_probs=103.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008105 297 SLVNFSCKQGKYDDAVLVINNLLSRGMEP-NSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKY 375 (577)
Q Consensus 297 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 375 (577)
.+...+.+.|++++|++++++......+| |...|..+.......++++.|...++.+.+.+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666777788888888886544443123 3344444555566677888888888888776533 55566667666 677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008105 376 GLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSS-CSPCLITYNTLIDGLAKKGCMEKAMVL 454 (577)
Q Consensus 376 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~ 454 (577)
+++++|.+++.+..+. .+++..+...+..+.+.++++++..+++.+.... .+++...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888776655 3566667778888888888888888888866432 345677788888888889999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 008105 455 YGQMMENGISP-DDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRY 533 (577)
Q Consensus 455 ~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 533 (577)
+++..+. .| |......++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|..++++..+..
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 9988875 35 46677888888888888888888888876653 3455667788888888899999999999887632
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105 534 KPDDTVFSTIVKKVADDGMTEEAYKLWQKLIE 565 (577)
Q Consensus 534 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (577)
+.|+.+...+.+++...|+.++|.++..++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 44777888888899999999999888777654
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=1e-14 Score=138.67 Aligned_cols=259 Identities=14% Similarity=0.137 Sum_probs=60.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008105 122 KILQNFCSRGKLTDASKLIDIMARRN-QIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKR 200 (577)
Q Consensus 122 ~li~~~~~~g~~~~A~~l~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 200 (577)
.+...+.+.|++++|++++++..... .+.|...|..+.......++++.|++.++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 34555566666666666664443332 122333333333444445556666666666555432 234444444444 455
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008105 201 GQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKG-CPPYLITYTILIEQVCKQCGIARAIEV 279 (577)
Q Consensus 201 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 279 (577)
+++++|.+++++..+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555544433 2344444455555555555555555555544321 223444444455555555555555555
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 008105 280 LDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHS 359 (577)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 359 (577)
+++..+.. +.|....+.++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|...++...+.. +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 55555442 1123444445555555555555444444444332 1222333444444444444444444444444322 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008105 360 PTVFTYNILINGLCKYGLVDRAINSFNQ 387 (577)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~ 387 (577)
.|+.+...+.+++.+.|+.++|.++..+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp T-HHHHHHHHHHHT--------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 2444444444444444444444444443
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=4e-11 Score=113.05 Aligned_cols=393 Identities=16% Similarity=0.132 Sum_probs=195.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 008105 119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPD-FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPD-TITYNMMVGG 196 (577)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~ 196 (577)
.+....+-|.++|++++|++.|.+.++. .|+ +..|.....+|...|+|++..+--.+.++.+ |+ +..+..-..+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHH
Confidence 3556678889999999999999999986 566 7778888899999999999999888888764 33 3345555566
Q ss_pred HHhcCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHHc--
Q 008105 197 LCKRGQIRSAIALLDEMSVS-GCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLR-KG--CPPYLITYTILIEQVCKQ-- 270 (577)
Q Consensus 197 ~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~-- 270 (577)
+-..|++++|+.=..-..-. |+ .|..+--.+=+.+- ..|..-.++-.+ .+ +-|+.....+....+...
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F-~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGF-QNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhc-ccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 67777777765422211111 11 11111111111111 112222222222 11 224443333333222110
Q ss_pred -----------------------C---CHHHHHHHHHHHHHc-CCCCCH-----------hhHHHHHHHHHhcCCHHHHH
Q 008105 271 -----------------------C---GIARAIEVLDDMAIE-GCSPDI-----------VTYNSLVNFSCKQGKYDDAV 312 (577)
Q Consensus 271 -----------------------g---~~~~A~~~~~~~~~~-~~~~~~-----------~~~~~li~~~~~~g~~~~A~ 312 (577)
+ .+..|.+.+.+-... -..++. .+...-...+.-.|+.-.|.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 0 112222221111100 000000 01111111123345555555
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 008105 313 LVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKN 392 (577)
Q Consensus 313 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 392 (577)
.-|+..++....++. .|.-+...|....+.++..+.|....+.+. -++.+|..-.+.+.-.+++++|..=|++.+...
T Consensus 347 ~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 347 EDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred hhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 666655555332222 144444455555666666666665555442 244455555555555566666666666655543
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------
Q 008105 393 CQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPD------ 466 (577)
Q Consensus 393 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------ 466 (577)
+.+...|-.+.-+..+.+.++++...|++..++ ++..+..|+.....+...+++++|.+.|+..++. .|+
T Consensus 425 -pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v 500 (606)
T KOG0547|consen 425 -PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIV 500 (606)
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccc
Confidence 334444444444444555666666666665554 2444555666666666666666666666665542 122
Q ss_pred -H--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008105 467 -D--ITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMI 529 (577)
Q Consensus 467 -~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 529 (577)
. ..--.++..- -.+++..|.+++++..+.+.+ ....|..|...-.+.|+.++|+++|++..
T Consensus 501 ~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 501 NAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1 1111111111 125566666666665554322 23445555555666666666666666554
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=2.4e-12 Score=126.10 Aligned_cols=289 Identities=13% Similarity=0.056 Sum_probs=210.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHccCCHHHHHHH
Q 008105 272 GIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGM--EPNSITYNTLLHSLGSRGCWDAVDKI 349 (577)
Q Consensus 272 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~ 349 (577)
+..+|...|..+... +.-+..+...+..+|...+++++|.++|+.+.+... .-+...|++.+..+-+ +-+...
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 467788888885554 222335556677888888888888888888876521 1255677777755432 112222
Q ss_pred H-HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 008105 350 L-DIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSC 428 (577)
Q Consensus 350 ~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 428 (577)
+ +.+.+. .+..+.+|.++.+.|.-+++.+.|++.|++.++.+ +-...+|+.+..-+.....+|.|...|+......
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 2 222222 23567889999999999999999999999988764 3377888888888888889999999998887654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHH
Q 008105 429 SPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLV 508 (577)
Q Consensus 429 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 508 (577)
+-+...|..+...|.+.++++.|+-.|++..+-+ +-+.+....+...+-+.|+.++|++++++....+.+ |+..--..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 3344566677888899999999999999988753 235566677777888889999999999998876544 33333345
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 008105 509 IHGLCKSKKVDMAIQVLELMISSRYKPD-DTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEKG 572 (577)
Q Consensus 509 i~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 572 (577)
+..+...+++++|...++++.+ +.|+ ..++..+.+.|.+.|+.+.|..-|.-+.+.+|++..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 6667788999999999999885 3454 566777888999999999998888888777766654
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=4.4e-11 Score=107.09 Aligned_cols=272 Identities=15% Similarity=0.135 Sum_probs=173.6
Q ss_pred cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHH
Q 008105 130 RGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPD---TITYNMMVGGLCKRGQIRSA 206 (577)
Q Consensus 130 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A 206 (577)
+++.++|..+|-+|.+.. +.+..+..+|.+.|.+.|..++|+.+++.+.++.--+. ....-.|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 567889999999998853 33666777788999999999999999999887521111 22344566778888999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008105 207 IALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYL----ITYTILIEQVCKQCGIARAIEVLDD 282 (577)
Q Consensus 207 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 282 (577)
.++|..+.+.| .--......|+..|-...+|++|++.-+++.+.+-.+.. ..|.-|...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99998888654 344566778888888888888888888888776533332 2344455555556667777777777
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 008105 283 MAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTV 362 (577)
Q Consensus 283 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 362 (577)
....+ +..+..--.+.+.....|+++.|.+.++...+.+..--..+...|..+|...|+.++....+..+.+.. +..
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 76653 112222233445666677777777777777666443334455666666667777766666666666543 222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008105 363 FTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALC 408 (577)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 408 (577)
..-..+-..-....-.+.|...+.+-+.. +|+...+..+++.-.
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 23333333333333445555554444443 566666666665543
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=1.6e-10 Score=106.81 Aligned_cols=290 Identities=12% Similarity=0.057 Sum_probs=202.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 008105 270 QCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKI 349 (577)
Q Consensus 270 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 349 (577)
.|++.+|.++..+-.+.+-. ....|..-+.+.-+.|+.+.+-.++.+..+..-.++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 56777777777666555422 23445555566667777777777777777664445555666666667777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHH
Q 008105 350 LDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDI-------VTYNTVLGALCKEGMLNEALQLLHL 422 (577)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 422 (577)
.+++.+.+. .++........+|.+.|++.....++..+.+.+.-.+. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 777776653 45666777777788888888888888777777655444 3566666665555555555556665
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCcc
Q 008105 423 LNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGK-RGNKMR 501 (577)
Q Consensus 423 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~ 501 (577)
...+ .+.++..-.+++.-+.+.|+.++|.++..+..+++..|. -...-.+.+-++.+.-.+..++-.+ .+. +
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~ 327 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE--D 327 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC--C
Confidence 5443 244566667788888889999999999888888766555 1122234566777777777766555 333 3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008105 502 NSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFE 570 (577)
Q Consensus 502 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 570 (577)
+..+.++...|.+.+.|.+|.+.|+... ...|+..+|..+.+++.+.|+.++|.+..++.+-.-..|
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 4677888899999999999999999777 457899999999999999999999998888877443333
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.53 E-value=2.2e-10 Score=105.98 Aligned_cols=286 Identities=13% Similarity=0.070 Sum_probs=170.9
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008105 200 RGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEV 279 (577)
Q Consensus 200 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 279 (577)
.|++.+|+++..+-.+.+ +.....|..-+.+--+.|+.+.+-.++.+.-+..-.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 456666666655555444 2223334444444445556666655555554432233444444555555556666666665
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHH
Q 008105 280 LDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNS-------ITYNTLLHSLGSRGCWDAVDKILDI 352 (577)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~ 352 (577)
.+++.+.+ +..+........+|.+.|++.+...++.++.+.|.-.|. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 55555543 224445555566666666666666666666665544332 3455555555555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 008105 353 MNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCL 432 (577)
Q Consensus 353 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 432 (577)
..+. .+.++..-.+++.-+.++|+.++|.++..+..+++..|... ..-.+.+-++.+.-.+..+...+.. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 5432 23355566677777788888888888888887776555411 1223445566666666665554442 4445
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105 433 ITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGK 495 (577)
Q Consensus 433 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 495 (577)
..+.+|...|.+.+.|.+|...|+...+. .|+..+|+.+.+++.+.|+.++|.+..++...
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 67777888888888888888888877664 47888888888888888888888888777654
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.53 E-value=3.2e-11 Score=121.38 Aligned_cols=441 Identities=15% Similarity=0.092 Sum_probs=251.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008105 108 SDGPFVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDT 187 (577)
Q Consensus 108 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 187 (577)
+...|+.||.+||.++|.-||..|+.+.|- +|..|.-+..+.+...++.++.+..+.++.+.+. .|-+
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 445678899999999999999999999988 8888877666666666666666666666655554 4556
Q ss_pred HHHHHHHHHHHhcCChHH---HHHHHHHHh----hCCC-----------------CCCHHHHHHHHHHHHhCCChHHHHH
Q 008105 188 ITYNMMVGGLCKRGQIRS---AIALLDEMS----VSGC-----------------EPDVITYNTILRTMFDNGKFKQAIG 243 (577)
Q Consensus 188 ~~~~~li~~~~~~g~~~~---A~~~~~~~~----~~g~-----------------~~~~~~~~~li~~~~~~~~~~~A~~ 243 (577)
.+|+.|..+|...|++.. ..+.++.+. ..|+ -||..+ .+.-..-.|-++.+++
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLK 160 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHH
Confidence 667777777777766443 222111111 1121 112111 1111111111222222
Q ss_pred HHH-----------------------------HHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHh
Q 008105 244 FWK-----------------------------DQLRKGC-PPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIV 293 (577)
Q Consensus 244 ~~~-----------------------------~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 293 (577)
++. .+.+... .|+..+|.+++..-...|+++.|..++.+|.++|++.+..
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 111 1111111 4788888888888888888888888888888888887777
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHH------------------------HHH
Q 008105 294 TYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAV------------------------DKI 349 (577)
Q Consensus 294 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a------------------------~~~ 349 (577)
-|-.|+-+ .++..-+..+++-|...|+.|+..|+...+-.+.+.|....+ .+.
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~ 317 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKR 317 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHH
Confidence 66666655 777777888888888888888888887666555443322111 000
Q ss_pred HHHH------------HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHhcCC--
Q 008105 350 LDIM------------NEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKN--C-QPDIVTYNTVLGALCKEGM-- 412 (577)
Q Consensus 350 ~~~~------------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-~~~~~~~~~li~~~~~~g~-- 412 (577)
++.- .-.|......+|...+. ....|.-++..++-..+..-- . ..++..|..++.-|.+.-+
T Consensus 318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~ 396 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERH 396 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhh
Confidence 0000 00111112223332222 122455555555555554221 1 1123334333333322110
Q ss_pred --------------------hhHHHHHHHHHhhC----------------CCC-------CCHHHHHHHHHHHHhcCCHH
Q 008105 413 --------------------LNEALQLLHLLNGS----------------SCS-------PCLITYNTLIDGLAKKGCME 449 (577)
Q Consensus 413 --------------------~~~A~~~~~~~~~~----------------~~~-------p~~~~~~~li~~~~~~g~~~ 449 (577)
..+..+........ ... +-...-+.++..++..-+..
T Consensus 397 ~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~l 476 (1088)
T KOG4318|consen 397 ICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKL 476 (1088)
T ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 00111111110000 000 00111233444444444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008105 450 KAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKR--GNKMRNSAYRLVIHGLCKSKKVDMAIQVLEL 527 (577)
Q Consensus 450 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 527 (577)
+++..-+.....-+ ...|..|+.-++...+.+.|..+..+.... .+..+..-+..+.+.+.+.+...++.+++++
T Consensus 477 K~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e 553 (1088)
T KOG4318|consen 477 KILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYE 553 (1088)
T ss_pred HHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhh
Confidence 44433333322111 145788888888888999999999888653 3345666788899999999999999999999
Q ss_pred HHHCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008105 528 MISSR-YKPD-DTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFE 570 (577)
Q Consensus 528 m~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 570 (577)
+.+.- ..|+ ..++..++......|+.+.-.++.+-+...|+.-
T Consensus 554 ~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 554 DKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 98631 2332 4566677888888999998888888887777644
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=2.9e-11 Score=118.56 Aligned_cols=285 Identities=11% Similarity=0.046 Sum_probs=221.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008105 236 GKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEG--CSPDIVTYNSLVNFSCKQGKYDDAVL 313 (577)
Q Consensus 236 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 313 (577)
-+..+|+..|..+... +.-.......+..+|...+++++|.++|+.+.+.. ..-+...|.+.+..+-+.- ++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHH
Confidence 4567899999885443 44455667778889999999999999999998753 1125677877775543321 222
Q ss_pred HH-HHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 008105 314 VI-NNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKN 392 (577)
Q Consensus 314 ~~-~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 392 (577)
.+ +.+.+.. +-...+|.++.++|.-+++.+.|.+.|++..+.+. ....+|+.+..-+.....+|.|...|+..+...
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 22 2233332 33568999999999999999999999999998652 367889999999999999999999999988653
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008105 393 CQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRT 472 (577)
Q Consensus 393 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 472 (577)
+-+..+|..+.-.|.+.++++.|+-.|+.+.+.+ +-+.+....+...+-+.|+.++|++++++..... +-|+..--.
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 3344556667788999999999999999998876 6677778888888999999999999999998754 234555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008105 473 LIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISS 531 (577)
Q Consensus 473 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 531 (577)
.+..+...+++++|+..++++.+.- +-+...|..+...|.+.|+.+.|+.-|.-|.+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 5666778899999999999998852 235667888999999999999999999988854
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=1.3e-10 Score=104.16 Aligned_cols=289 Identities=16% Similarity=0.136 Sum_probs=171.1
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHH
Q 008105 200 RGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPY---LITYTILIEQVCKQCGIARA 276 (577)
Q Consensus 200 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 276 (577)
..+.++|.++|-+|.+.. +.+..+--+|.+.|.+.|..+.|+.+.+.+.++.-.+. ......|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 456677777777776542 23344445666667777777777777777665421111 12234455566777777777
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHH
Q 008105 277 IEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSI----TYNTLLHSLGSRGCWDAVDKILDI 352 (577)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~ 352 (577)
.++|..+...+ .--......|+..|-...++++|+++-+++.+.+..+..+ .|.-+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 77777776543 2233455667777777777777777777777665444332 344444555556677777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 008105 353 MNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCL 432 (577)
Q Consensus 353 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 432 (577)
..+.+. ..+..--.+.+.+...|+++.|++.++.+.+.+..--+.+...|..+|.+.|+.++....+..+.+.... .
T Consensus 206 Alqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g--~ 282 (389)
T COG2956 206 ALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG--A 282 (389)
T ss_pred HHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC--c
Confidence 766542 2333444556667777777777777777777654444556667777777777777777777766655322 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhh
Q 008105 433 ITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCR---ADQVEEAVDLLKEIGK 495 (577)
Q Consensus 433 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 495 (577)
..-..+...-....-.+.|...+.+-... .|+...+..++..-.. .|...+.+.+++.|..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 23333333333333445555554444433 4777777777765443 2345555666666654
No 53
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=6.5e-09 Score=94.44 Aligned_cols=421 Identities=15% Similarity=0.096 Sum_probs=253.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008105 124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI 203 (577)
Q Consensus 124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 203 (577)
+.-+....++..|+.+++--...+-.....+-.-+..++.+.|++++|...+..+.... .++...+-.|.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 45566677888888888776644332222222234455667888888888888877654 56667777777666777888
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008105 204 RSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDM 283 (577)
Q Consensus 204 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 283 (577)
.+|..+-.+.. .++-.-..+...-.+.++-++-..+.+.+... ..--.+|.+.....-.+++|.+++.++
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 88887766553 23444444555555666666666655554332 122233444444455677788888777
Q ss_pred HHcCCCCCHhhHHHHH-HHHHhcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHc--cCCH----------------
Q 008105 284 AIEGCSPDIVTYNSLV-NFSCKQGKYDDAVLVINNLLSRGMEPNS-ITYNTLLHSLGS--RGCW---------------- 343 (577)
Q Consensus 284 ~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~--~g~~---------------- 343 (577)
... .|+-...|.-+ -.|.+..-++-+.++++-.++. -||. .+.|.......+ .|+.
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~ 253 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY 253 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc
Confidence 754 34444444433 3455666667677777666655 3332 233322211111 1111
Q ss_pred -----------------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008105 344 -----------------DAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGA 406 (577)
Q Consensus 344 -----------------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 406 (577)
+.|.+++-.+.+. -+..--.|+-.|.+.+++.+|..+.+++.-. .|.......+.
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv-- 325 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV-- 325 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH--
Confidence 1222222221111 1112233455678899999999988876422 23333322222
Q ss_pred HHhcC-------ChhHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008105 407 LCKEG-------MLNEALQLLHLLNGSSCSPCLI-TYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFC 478 (577)
Q Consensus 407 ~~~~g-------~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 478 (577)
++..| ...-|...|+..-+++...|.. --.++.+.+.-..++++++..+..+...-.. |...--.+.++++
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~ 404 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKL 404 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHH
Confidence 22333 3455666666665555433332 2344556666677889998888888765333 3334445788999
Q ss_pred hcCCHHHHHHHHHHHhhCCCCccHHHH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHH
Q 008105 479 RADQVEEAVDLLKEIGKRGNKMRNSAY-RLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTV-FSTIVKKVADDGMTEEA 556 (577)
Q Consensus 479 ~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~A 556 (577)
..|++.+|.++|-.+....++ |..+| ..+.++|.+++.++.|+.++-++ .-+.+... ...+..-|.+.+.+--|
T Consensus 405 atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyya 480 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYA 480 (557)
T ss_pred HhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888766555 44555 55677889999999998887666 32223333 34455689999999999
Q ss_pred HHHHHHHHHcCCCCCc
Q 008105 557 YKLWQKLIEWKVFEKG 572 (577)
Q Consensus 557 ~~~~~~~~~~~~~~~~ 572 (577)
.+.|+.+...+|.|+.
T Consensus 481 aKAFd~lE~lDP~pEn 496 (557)
T KOG3785|consen 481 AKAFDELEILDPTPEN 496 (557)
T ss_pred HHhhhHHHccCCCccc
Confidence 9999999888887763
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.1e-09 Score=103.59 Aligned_cols=60 Identities=18% Similarity=0.135 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008105 115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQ 176 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 176 (577)
.|+..---+.+++.-.|++++|..+...-.-. ..|..+.......+.+..++++|..++.
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555566889999999999998887654322 3467777777888889999999998888
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.43 E-value=2e-10 Score=115.72 Aligned_cols=248 Identities=16% Similarity=0.116 Sum_probs=163.2
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 008105 139 LIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGC 218 (577)
Q Consensus 139 l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 218 (577)
++-.+...|+.||..||..+|..||..|+.+.|- +|..|.....+.+...++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4556777899999999999999999999999998 9999988888888899999999998889887775
Q ss_pred CCCHHHHHHHHHHHHhCCChHH---HHHHHHHHHH----CCC-----------------CCCHHHHHHHHHHHHHcCCHH
Q 008105 219 EPDVITYNTILRTMFDNGKFKQ---AIGFWKDQLR----KGC-----------------PPYLITYTILIEQVCKQCGIA 274 (577)
Q Consensus 219 ~~~~~~~~~li~~~~~~~~~~~---A~~~~~~~~~----~~~-----------------~~~~~~~~~l~~~~~~~g~~~ 274 (577)
.|-..+|..|..+|...|++.. +.+.+..+.. .|+ -||. ...+....-.|-++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLWA 156 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHHH
Confidence 6889999999999999999765 3332222211 111 1121 12223333445555
Q ss_pred HHHHHHHHHHHcCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 008105 275 RAIEVLDDMAIEGC-SPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIM 353 (577)
Q Consensus 275 ~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 353 (577)
.+.+++..+..... .|..+ .++-+.... ....++.......--.|+..+|.+++.+-...|+.+.|..++..|
T Consensus 157 qllkll~~~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHHhhCCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 55555544432210 01111 122222211 122222222222111477778888888777888888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008105 354 NEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKE 410 (577)
Q Consensus 354 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 410 (577)
.+.|.+.+..-|-.|+-+ .++..-+..+++-|...|+.|+..|+...+-.+.++
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N 284 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSN 284 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcc
Confidence 888877777666666654 666777777777777778888877776665555543
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=7.4e-10 Score=104.69 Aligned_cols=385 Identities=14% Similarity=0.055 Sum_probs=262.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHh
Q 008105 157 NLIRGLIRIDRIEKASKVLQIMVMSGGVPD-TITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPD-VITYNTILRTMFD 234 (577)
Q Consensus 157 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~ 234 (577)
...+-|.+.|++++|++.+.+.++. .|| +.-|.....+|...|++++..+.-.+..+. .|+ +..+..-.+++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 3455688999999999999999986 566 778888999999999999999988888765 343 5566667778888
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHH-cC--CCCCHhhHHHHHHHHH
Q 008105 235 NGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLD--------DMAI-EG--CSPDIVTYNSLVNFSC 303 (577)
Q Consensus 235 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~-~~--~~~~~~~~~~li~~~~ 303 (577)
.|++++|+.=. |...+..++....-...+.+++. +-.+ .+ +-|+.....+....+.
T Consensus 196 lg~~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~ 262 (606)
T KOG0547|consen 196 LGKFDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFH 262 (606)
T ss_pred hccHHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcc
Confidence 88888876422 22222222222222222222222 2122 11 2233332222222211
Q ss_pred h-------------------------c---CCHHHHHHHHHHHhhC---CCCCC---------HHHHHHHHHHHHccCCH
Q 008105 304 K-------------------------Q---GKYDDAVLVINNLLSR---GMEPN---------SITYNTLLHSLGSRGCW 343 (577)
Q Consensus 304 ~-------------------------~---g~~~~A~~~~~~m~~~---g~~p~---------~~~~~~ll~~~~~~g~~ 343 (577)
. . ..+..|...+.+-... ....+ ..+.......+.-.|+.
T Consensus 263 ~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~ 342 (606)
T KOG0547|consen 263 ADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS 342 (606)
T ss_pred ccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence 0 0 0122222222221110 00111 11111112223457888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008105 344 DAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLL 423 (577)
Q Consensus 344 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 423 (577)
-.+..-|+..+.....++ ..|--+..+|....+.++....|++..+.+ +.++.+|..-.+.+.-.+++++|..-|+..
T Consensus 343 ~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Ka 420 (606)
T KOG0547|consen 343 LGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKA 420 (606)
T ss_pred hhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998764433 337778888999999999999999999886 667888888888888889999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----
Q 008105 424 NGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNK---- 499 (577)
Q Consensus 424 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---- 499 (577)
.... +.+...|-.+.-+..+.+.++++...|++.++. ++--+..|+.....+...++++.|.+.|+...+....
T Consensus 421 i~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 421 ISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred hhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence 8875 556777777777778899999999999999876 4555788999999999999999999999998764221
Q ss_pred -ccHHHH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105 500 -MRNSAY--RLVIHGLCKSKKVDMAIQVLELMISSRYKPD-DTVFSTIVKKVADDGMTEEAYKLWQKLIE 565 (577)
Q Consensus 500 -~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (577)
.+...+ ..++- +.-.+++..|.+++++..+. .|. ...|..|...-.+.|+.++|+++|++...
T Consensus 499 ~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 499 IVNAAPLVHKALLV-LQWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccchhhhhhhHhh-hchhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 122211 12221 22348999999999999854 443 56789999999999999999999998764
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=3.7e-10 Score=104.35 Aligned_cols=202 Identities=14% Similarity=0.052 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105 361 TVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLID 440 (577)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 440 (577)
....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34556667777777788888888887777653 4456667777777777888888888887777654 445566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChH
Q 008105 441 GLAKKGCMEKAMVLYGQMMENGI-SPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVD 519 (577)
Q Consensus 441 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 519 (577)
.+...|++++|.+.+++..+... ......+..+...+...|++++|.+.+++..+... .+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHH
Confidence 78888888888888888876422 22345666677788888888888888888876532 24556777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105 520 MAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEW 566 (577)
Q Consensus 520 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (577)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 888888888765 3445666777778888888888888888877653
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.40 E-value=2e-07 Score=91.54 Aligned_cols=435 Identities=11% Similarity=0.068 Sum_probs=272.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105 117 EKTNNKILQNFCSRGKLTDASKLIDIMARRN-QIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG 195 (577)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 195 (577)
+..|-..++.+.++|+...-+..|++.+..- +.....+|...+......+-.+-+..++++-++. ++..-+..|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 4678888999999999999999999988753 2346678999999999999999999999999865 4455778889
Q ss_pred HHHhcCChHHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHhCCChHHH---HHHHHHHHHCCCCCCH--HHHHHH
Q 008105 196 GLCKRGQIRSAIALLDEMSVS-------GCEPDVITYNTILRTMFDNGKFKQA---IGFWKDQLRKGCPPYL--ITYTIL 263 (577)
Q Consensus 196 ~~~~~g~~~~A~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~~~~~~A---~~~~~~~~~~~~~~~~--~~~~~l 263 (577)
.+++.+++++|.+.+...... | +.+...|.-+-....++.+.-.. ..+++.+... -+|. ..|++|
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~g-kSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SL 254 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKG-KSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSL 254 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcc-cchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHH
Confidence 999999999999999887632 2 44556677666666665443322 2333333322 3343 568999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC----------------------CHHHHHHHHHHHhhC
Q 008105 264 IEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQG----------------------KYDDAVLVINNLLSR 321 (577)
Q Consensus 264 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~A~~~~~~m~~~ 321 (577)
.+-|.+.|.++.|.++|++.... ..++.-|+.+-++|+.-. +++-.+.-|+.+...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 99999999999999999988765 223333444444443221 122233334444333
Q ss_pred CC-----------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008105 322 GM-----------EPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASH-----SPTVFTYNILINGLCKYGLVDRAINSF 385 (577)
Q Consensus 322 g~-----------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~ 385 (577)
+. ..+..+|..-+.. ..|+..+....+.+..+.-- -.-...|..+...|-..|+++.|..+|
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 11 1122233332222 24555566666666654311 112346788888899999999999999
Q ss_pred HHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-----------C------CHHHHHHHHHHHHhc
Q 008105 386 NQMVSKNCQPD---IVTYNTVLGALCKEGMLNEALQLLHLLNGSSCS-----------P------CLITYNTLIDGLAKK 445 (577)
Q Consensus 386 ~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----------p------~~~~~~~li~~~~~~ 445 (577)
++..+...+-- ..+|..-...=.+..+++.|+++++......-. + +...|...++.--..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 99887643222 345555556666777888888888766532211 1 223455666666667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccH-HHHHHHHHHHHh---cCChHHH
Q 008105 446 GCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRN-SAYRLVIHGLCK---SKKVDMA 521 (577)
Q Consensus 446 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~---~g~~~~A 521 (577)
|-++....+++++++..+. ++.........+-...-++++.+++++-...-..|+. ..|+..+.-+.+ .-.++.|
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 8888888888888876542 2222222222233445577777777766554333442 345555444432 3367788
Q ss_pred HHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105 522 IQVLELMISSRYKPDDTV--FSTIVKKVADDGMTEEAYKLWQKLI 564 (577)
Q Consensus 522 ~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~ 564 (577)
..+|++.++ |.+|...- |-.....=-+.|....|.+++++..
T Consensus 570 RdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 570 RDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888888887 66665432 2222333344577777777777643
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.40 E-value=7.7e-08 Score=94.57 Aligned_cols=430 Identities=12% Similarity=0.082 Sum_probs=238.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGL 197 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 197 (577)
..|-.++..| ..+++...+++.+.+++. .+-...+.....-.+...|+-++|........+.. ..+.+.|..+.-.+
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHH
Confidence 3445555555 356677777777777773 44455555555556667778888887777776644 34566777777777
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008105 198 CKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAI 277 (577)
Q Consensus 198 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 277 (577)
-...++++|.+.|......+ +.|...|.-+.-.-++.|+++........+.+. .+.....|..+..++.-.|+...|.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888777665 556666766666666777777777776666654 2344556777777777778888888
Q ss_pred HHHHHHHHcC-CCCCHhhHHHHH------HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHccCCHHHHHHH
Q 008105 278 EVLDDMAIEG-CSPDIVTYNSLV------NFSCKQGKYDDAVLVINNLLSRGMEPNSITY-NTLLHSLGSRGCWDAVDKI 349 (577)
Q Consensus 278 ~~~~~~~~~~-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~~~ 349 (577)
.++++..+.. -.|+...+.... ....+.|..++|.+.+..-... ..|...+ ..-...+.+.+++++|..+
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 8877776643 235554444332 2344566667776666544332 1222222 2334556677788888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHH-HHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHhhC
Q 008105 350 LDIMNEASHSPTVFTYNILIN-GLCKYGLVDRAI-NSFNQMVSKNCQPDIVTYNT-VLGALCKEGMLNEALQLLHLLNGS 426 (577)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~ 426 (577)
+..+...+ ||..-|...+. ++.+.-+.-+++ .+|....+. .|-...-.. =+.......-.+....++..+.+.
T Consensus 242 y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 242 YRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 88777764 55554444433 333333333343 455544433 111111100 011111111222233444555556
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HCC----------CCCCHHHH--HHHHHHHHhcCCHHHH
Q 008105 427 SCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMM--------ENG----------ISPDDITH--RTLIWGFCRADQVEEA 486 (577)
Q Consensus 427 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~g----------~~p~~~~~--~~li~~~~~~g~~~~A 486 (577)
|+++- +..+...|-.-...+ ++++.+ ..| -+|....| -.++..+-+.|+++.|
T Consensus 318 g~p~v---f~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A 390 (700)
T KOG1156|consen 318 GVPSV---FKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA 390 (700)
T ss_pred CCCch---hhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH
Confidence 54432 222222222111111 222211 111 03443333 3455666677777777
Q ss_pred HHHHHHHhhCCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105 487 VDLLKEIGKRGNKMR-NSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIE 565 (577)
Q Consensus 487 ~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (577)
..+++..... .|+ ...|..-.+.+.+.|++++|..++++..+.. .||..+=.--++-..++++.++|.++.....+
T Consensus 391 ~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 391 LEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred HHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhh
Confidence 7777776654 233 2344444566777777777777777776533 34444444555666677777777777766665
Q ss_pred cCC
Q 008105 566 WKV 568 (577)
Q Consensus 566 ~~~ 568 (577)
.|.
T Consensus 468 ~~~ 470 (700)
T KOG1156|consen 468 EGF 470 (700)
T ss_pred ccc
Confidence 543
No 60
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.39 E-value=6.3e-08 Score=95.16 Aligned_cols=427 Identities=14% Similarity=0.098 Sum_probs=278.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008105 123 ILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQ 202 (577)
Q Consensus 123 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 202 (577)
..-.+...|+-++|....+...+..+. +.+.|..+.-.+....++++|++.|...+..+ +-|...|.-+.-.-++.|+
T Consensus 47 kGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd 124 (700)
T KOG1156|consen 47 KGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRD 124 (700)
T ss_pred ccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHh
Confidence 334456678999999999888875443 67778888877888899999999999999876 5577788777777778888
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHHcCCHHH
Q 008105 203 IRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKG-CPPYLITYTILI------EQVCKQCGIAR 275 (577)
Q Consensus 203 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~g~~~~ 275 (577)
++-....-....+.. +.....|..++.++.-.|++..|..+.++..+.. ..|+...+.-.. ....+.|..++
T Consensus 125 ~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ 203 (700)
T KOG1156|consen 125 YEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQK 203 (700)
T ss_pred hhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 888877777776653 4466788889999999999999999999988764 246665554332 23456788888
Q ss_pred HHHHHHHHHHcCCCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH-HHHccCCHHHHH-HHHHH
Q 008105 276 AIEVLDDMAIEGCSPDIVT-YNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLH-SLGSRGCWDAVD-KILDI 352 (577)
Q Consensus 276 A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~a~-~~~~~ 352 (577)
|.+.+..-... ..|... -..-...+.+.+++++|..++..++.. .||...|...+. ++.+..+.-++. .+|..
T Consensus 204 ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ 279 (700)
T KOG1156|consen 204 ALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAI 279 (700)
T ss_pred HHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 88877665432 122222 234556788999999999999999988 677776665544 443333333343 66666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHHHhhCC-
Q 008105 353 MNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNE----ALQLLHLLNGSS- 427 (577)
Q Consensus 353 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~- 427 (577)
..+.- +.....-..=++......-.+..-+++..+.+.|+++-... +...|-.-...+- +..+...+...+
T Consensus 280 ls~~y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d---l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~ 355 (700)
T KOG1156|consen 280 LSEKY-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD---LRSLYKDPEKVAFLEKLVTSYQHSLSGTGM 355 (700)
T ss_pred HhhcC-cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh---hHHHHhchhHhHHHHHHHHHHHhhcccccC
Confidence 65542 11111111111111112223444556677777776543333 3332221111111 111122222111
Q ss_pred ---------CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105 428 ---------CSPCLITY--NTLIDGLAKKGCMEKAMVLYGQMMENGISPDD-ITHRTLIWGFCRADQVEEAVDLLKEIGK 495 (577)
Q Consensus 428 ---------~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 495 (577)
-+|....| -.++..|-+.|+++.|..+++..+++ .|+. ..|..=.+.+.++|++++|..++++..+
T Consensus 356 f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 356 FNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred CCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 14555544 45677888999999999999999875 5663 3566666889999999999999999988
Q ss_pred CCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CC----HHHHHHH--HHHHHhcCCHHHHHHHHHHH
Q 008105 496 RGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYK--PD----DTVFSTI--VKKVADDGMTEEAYKLWQKL 563 (577)
Q Consensus 496 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~----~~~~~~l--~~~~~~~g~~~~A~~~~~~~ 563 (577)
.+. +|...-.--..-..++.+.++|.++.....+.|.. -+ .-.|-.+ ..+|.+.|++.+|.+=+...
T Consensus 434 lD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 434 LDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred ccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 653 45444334556667899999999999988876641 11 1123222 45788888888887655544
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=5.9e-10 Score=102.94 Aligned_cols=202 Identities=13% Similarity=0.103 Sum_probs=141.0
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105 115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV 194 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 194 (577)
.....+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 345677888888899999999999998887764 3356677778888888888888888888888765 34556777777
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008105 195 GGLCKRGQIRSAIALLDEMSVSGC-EPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGI 273 (577)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 273 (577)
..+...|++++|.+.+++...... ......+..+...+...|++++|.+.+++..... +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 888888888888888888775421 2234455666667777777777777777776542 33455666666677777777
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105 274 ARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLS 320 (577)
Q Consensus 274 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 320 (577)
++|.+.+++.... .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777777766655 233445555566666666777777666665543
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=6.1e-09 Score=100.50 Aligned_cols=288 Identities=10% Similarity=0.055 Sum_probs=216.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 008105 254 PPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTL 333 (577)
Q Consensus 254 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 333 (577)
..+......-.+-+...+++.+..++++...+.. ++....+..-|..+...|+..+-..+=.++.+.- +....+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 3455566666677788889999999999888764 4556666667778888888888777777777763 2356688888
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 008105 334 LHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGML 413 (577)
Q Consensus 334 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 413 (577)
.-.|...|+..+|++.|......+.. =...|-.+...|.-.|..++|+..+...-+. ++-....+--+.--|.+.+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 88888889999999999888765422 2346888888999999999999988877664 111222223334457788899
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHHHHH
Q 008105 414 NEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMEN--GISP----DDITHRTLIWGFCRADQVEEAV 487 (577)
Q Consensus 414 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~li~~~~~~g~~~~A~ 487 (577)
+-|.+.|.+..... +.|+..++-+.-.....+.+.+|..+|+..... .+.+ -..+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999998887764 667777777777777788899999999887621 1111 2346788889999999999999
Q ss_pred HHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008105 488 DLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVAD 549 (577)
Q Consensus 488 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 549 (577)
..+++..... +-+..++..+.-.+...|+++.|++.|.+.+ .+.|+-.+...+++.+..
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 9999988764 3477888888888999999999999999988 678888777777765443
No 63
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.1e-07 Score=92.61 Aligned_cols=412 Identities=15% Similarity=0.145 Sum_probs=228.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHH-
Q 008105 122 KILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNM--MVGGLC- 198 (577)
Q Consensus 122 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~--li~~~~- 198 (577)
+=++.+.+.|++++|.+....++..+ +.+...+..-+-++++.++|++|+++.+.-.. ..+++. +=.+||
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHH
Confidence 44677888999999999999999875 44677777778889999999999965554321 112222 245555
Q ss_pred -hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 008105 199 -KRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPP-YLITYTILIEQVCKQCGIARA 276 (577)
Q Consensus 199 -~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 276 (577)
+.+..++|+..++-.. +.|..+...-...+.+.+++++|+.+|+.+.+.+.+. +...-..++.+- ....+
T Consensus 90 Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~ 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQV 161 (652)
T ss_pred HHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhH
Confidence 6889999999888332 2344466667778889999999999999987654321 111111111110 00000
Q ss_pred HHHHHHHHHcCCCCCHhhHHHH---HHHHHhcCCHHHHHHHHHHHhhCC-------CCC------CHH-HHHHHHHHHHc
Q 008105 277 IEVLDDMAIEGCSPDIVTYNSL---VNFSCKQGKYDDAVLVINNLLSRG-------MEP------NSI-TYNTLLHSLGS 339 (577)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g-------~~p------~~~-~~~~ll~~~~~ 339 (577)
. +.+... ..| ..+|..+ ...+...|++.+|+++++...+.+ -.- ... .-..+.-++..
T Consensus 162 ~-~~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 162 Q-LLQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred H-HHHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 0 111111 111 1222222 233445566666666665552110 000 000 11122333445
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH----HHHH-----------------------------------------------
Q 008105 340 RGCWDAVDKILDIMNEASHSPTVFT----YNIL----------------------------------------------- 368 (577)
Q Consensus 340 ~g~~~~a~~~~~~~~~~~~~~~~~~----~~~l----------------------------------------------- 368 (577)
.|+-++|..++....+.... |... -|.+
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred hcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666665554322 1111 1111
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008105 369 INGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALC--KEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKG 446 (577)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 446 (577)
+..|. +..+.+.++-..... ..|.. .+..++..+. +.....++..++....+........+.-.++......|
T Consensus 316 L~l~t--nk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~g 390 (652)
T KOG2376|consen 316 LALFT--NKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQG 390 (652)
T ss_pred HHHHh--hhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcC
Confidence 11111 112222222222111 12222 2333333322 22246667777776666543333556667777788899
Q ss_pred CHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--CCCCccHHH----HHHHHHHH
Q 008105 447 CMEKAMVLYG--------QMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGK--RGNKMRNSA----YRLVIHGL 512 (577)
Q Consensus 447 ~~~~A~~~~~--------~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~----~~~li~~~ 512 (577)
+++.|.+++. .+.+.+..| .+...+...+.+.++.+.|..++.+... ..-.+.... +..+...-
T Consensus 391 n~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~ 468 (652)
T KOG2376|consen 391 NPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFK 468 (652)
T ss_pred CHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHH
Confidence 9999999988 555544444 4455666677777777777777776654 111222222 33333344
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105 513 CKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKL 563 (577)
Q Consensus 513 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 563 (577)
.+.|+-++|..+++++.+.. ++|..+...++.+|++.. .+.|+.+-+.+
T Consensus 469 lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 469 LRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred HhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 56799999999999998743 678888888888887764 66776655443
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.35 E-value=7.9e-10 Score=115.06 Aligned_cols=182 Identities=10% Similarity=0.069 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008105 203 IRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDD 282 (577)
Q Consensus 203 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 282 (577)
+++|...+++..+.. +.+...+..+...+...|++++|...|++.++.+ |.+...+..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555666665555543 3345555555555555566666666666655543 33444555555555566666666666666
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 008105 283 MAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTV 362 (577)
Q Consensus 283 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 362 (577)
..+.... +...+..++..+...|++++|...+++..+...+-+...+..+..++...|+.++|...+..+.... +.+.
T Consensus 398 Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~ 475 (553)
T PRK12370 398 CLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGL 475 (553)
T ss_pred HHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhH
Confidence 5554211 1112222333344455666666666555543211123334444555555666666666665554331 1222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008105 363 FTYNILINGLCKYGLVDRAINSFNQMVS 390 (577)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (577)
...+.+...|.+.| +.|...++.+.+
T Consensus 476 ~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 476 IAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 33344444445444 355554544443
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.34 E-value=2.6e-09 Score=111.22 Aligned_cols=268 Identities=10% Similarity=0.006 Sum_probs=184.9
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH---------hCCChHHHHHHHHHHHH
Q 008105 185 PDTITYNMMVGGLCK-----RGQIRSAIALLDEMSVSGCEPDVITYNTILRTMF---------DNGKFKQAIGFWKDQLR 250 (577)
Q Consensus 185 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~---------~~~~~~~A~~~~~~~~~ 250 (577)
.+...|...+.+... .+.+++|.+.|++..+.. +.+...|..+..++. ..+++++|...+++.++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 444545444444221 234578888888887663 334555655555443 23458899999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 008105 251 KGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITY 330 (577)
Q Consensus 251 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 330 (577)
.. |.+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 74 5678888888888999999999999999999874 335677888899999999999999999999987433 22233
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008105 331 NTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKE 410 (577)
Q Consensus 331 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 410 (577)
..++..+...|++++|...+++..+...+.++..+..+..++...|+.++|...+.++.... +.+....+.+...|...
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhcc
Confidence 34444566688999999999998766433355667778888999999999999999876652 33344455566667777
Q ss_pred CChhHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008105 411 GMLNEALQLLHLLNGSS-CSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENG 462 (577)
Q Consensus 411 g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 462 (577)
| ++|...++.+.+.. ..+....+ +-..|.-.|+-+.+..+ +++.+.|
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7 47777666655432 12222222 34445566776666666 8887654
No 66
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.32 E-value=4e-07 Score=89.46 Aligned_cols=407 Identities=10% Similarity=0.050 Sum_probs=275.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008105 153 HFCINLIRGLIRIDRIEKASKVLQIMVMS-GGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRT 231 (577)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 231 (577)
..|...+..+.++|++...+..|+..+.. .+......|...+......|-++.+..++++..+ .++..-+-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHH
Confidence 46888888899999999999999988765 2333456788889888889999999999999985 455557788899
Q ss_pred HHhCCChHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCH--hhHHHHHH
Q 008105 232 MFDNGKFKQAIGFWKDQLRK------GCPPYLITYTILIEQVCKQCGIA---RAIEVLDDMAIEGCSPDI--VTYNSLVN 300 (577)
Q Consensus 232 ~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~--~~~~~li~ 300 (577)
+++.+++++|.+.+...+.. ..+.+...|.-+.+...+.-+.- ...++++.+..+ -+|. ..|.+|..
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 99999999999999887643 23455666777776666554433 233445555443 3443 67999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC----------------------CHHHHHHHHHHHHhCC-
Q 008105 301 FSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRG----------------------CWDAVDKILDIMNEAS- 357 (577)
Q Consensus 301 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----------------------~~~~a~~~~~~~~~~~- 357 (577)
.|.+.|.+++|..++++.... ..+..-|..+.++|+.-. +++-...-|+.+....
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 999999999999999998876 334444555555443221 1122223333333221
Q ss_pred ----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChhHHHHHHH
Q 008105 358 ----------HSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPD------IVTYNTVLGALCKEGMLNEALQLLH 421 (577)
Q Consensus 358 ----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~ 421 (577)
-+.++..|..-+.. ..|+..+-...|.+..+. +.|. ...|..+...|-..|+++.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 12234444433332 246677778888887764 2222 3457888899999999999999999
Q ss_pred HHhhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CCC------CHHHHHHHHHHHHhcC
Q 008105 422 LLNGSSCSPC---LITYNTLIDGLAKKGCMEKAMVLYGQMMENG-----------ISP------DDITHRTLIWGFCRAD 481 (577)
Q Consensus 422 ~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p------~~~~~~~li~~~~~~g 481 (577)
+..+...+-- ..+|..-...-.++.+++.|+++.++..... .++ +...|...++.--..|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 9887653322 3455555666667888999999888775321 111 1233555556556678
Q ss_pred CHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh-c--CCHHHHH
Q 008105 482 QVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPD-DTVFSTIVKKVAD-D--GMTEEAY 557 (577)
Q Consensus 482 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~-~--g~~~~A~ 557 (577)
-++....+++++.+..+. ++.........+-.+.-++++.+++++-+..=..|+ ..+|+..+..+.+ - -+.+.|+
T Consensus 492 tfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred cHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 899999999999886654 333333334445667788999999998776433455 4677776655433 2 3689999
Q ss_pred HHHHHHHHcCCCCCc
Q 008105 558 KLWQKLIEWKVFEKG 572 (577)
Q Consensus 558 ~~~~~~~~~~~~~~~ 572 (577)
.+|++.++ |..|..
T Consensus 571 dLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 571 DLFEQALD-GCPPEH 584 (835)
T ss_pred HHHHHHHh-cCCHHH
Confidence 99999999 444543
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.31 E-value=1.3e-07 Score=94.89 Aligned_cols=412 Identities=12% Similarity=0.020 Sum_probs=239.7
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-CHHHHH
Q 008105 148 QIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEP-DVITYN 226 (577)
Q Consensus 148 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~ 226 (577)
+.-+...|..+.-++...|+++.+.+.|++....- --....|+.+...|...|.-..|..++++-....-.| |...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 34466667777777777777777777777765432 2245567777777777777777777776654332123 333333
Q ss_pred HHHHHHHh-CCChHHHHHHHHHHHHC--C--CCCCHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHcCCCC
Q 008105 227 TILRTMFD-NGKFKQAIGFWKDQLRK--G--CPPYLITYTILIEQVCK-----------QCGIARAIEVLDDMAIEGCSP 290 (577)
Q Consensus 227 ~li~~~~~-~~~~~~A~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~-----------~g~~~~A~~~~~~~~~~~~~~ 290 (577)
..-..|.+ .+.+++++.+-.+.+.. + -......|..+.-+|.. .....++++.+++..+.+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-T 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-C
Confidence 33333333 46666666666655541 1 11222333333333321 1124456677777766542 2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105 291 DIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILIN 370 (577)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 370 (577)
|+.+...+.--|+..++.+.|++..++..+.+..-+...|..+.-.+...+++.+|+.+.+...+.- +.|......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 3333333444566677777777777777776556667777777777777777777777776654321 011111111111
Q ss_pred HHHHcCCHHHHHHHHHHHHHC----------------------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008105 371 GLCKYGLVDRAINSFNQMVSK----------------------------NCQPDIVTYNTVLGALCKEGMLNEALQLLHL 422 (577)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~----------------------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 422 (577)
.-...++.++|+.....+... .....+.++..+..-... +...+..-. .
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~-~ 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSEL-K 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhccccc-c
Confidence 112234444444333322210 001111222222211110 111000000 0
Q ss_pred HhhCCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105 423 LNGSSCSP--C------LITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIG 494 (577)
Q Consensus 423 ~~~~~~~p--~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 494 (577)
+......| + ...|......+.+.+..++|...+.+..... +-....|......+...|..++|.+.|....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 22111122 2 2245566777888899999988888876642 3345667777777888899999999999888
Q ss_pred hCCCCccHHHHHHHHHHHHhcCChHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105 495 KRGNKMRNSAYRLVIHGLCKSKKVDMAIQ--VLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKV 568 (577)
Q Consensus 495 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (577)
..+.. ++.....+..++.+.|+..-|.. ++..+.+.+ +.+...|..+...+.+.|+.++|.+.|....+...
T Consensus 712 ~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 712 ALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred hcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 75422 45678889999999998888888 999998755 45789999999999999999999999999887543
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=7.9e-10 Score=99.20 Aligned_cols=235 Identities=12% Similarity=0.022 Sum_probs=191.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008105 330 YNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCK 409 (577)
Q Consensus 330 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 409 (577)
-+.+.++|.+.|.+.+|++.++...+.. |-+.||-.|-..|.+..++..|+.++.+-++. .+-|+.....+...+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 3567889999999999999998887764 67778888999999999999999999988876 23444444556677778
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008105 410 EGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDL 489 (577)
Q Consensus 410 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 489 (577)
.++.++|.++++...+.. +.++.....+...|.-.++++.|+.+++++.+.|+ -+...|+.+.-+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 899999999999888875 56677777778888889999999999999999886 4778888888888899999999999
Q ss_pred HHHHhhCCCCcc--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008105 490 LKEIGKRGNKMR--NSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWK 567 (577)
Q Consensus 490 ~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (577)
|++....--.|+ ...|..+.......|++..|.+.|+-.+.++ ....+.++.|.-.-.+.|+.++|+.+++......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 988876433333 4567778888888999999999999888653 3457888888888899999999999999988866
Q ss_pred CCC
Q 008105 568 VFE 570 (577)
Q Consensus 568 ~~~ 570 (577)
|..
T Consensus 460 P~m 462 (478)
T KOG1129|consen 460 PDM 462 (478)
T ss_pred ccc
Confidence 543
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=4.6e-09 Score=104.35 Aligned_cols=237 Identities=17% Similarity=0.125 Sum_probs=160.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-C-C
Q 008105 329 TYNTLLHSLGSRGCWDAVDKILDIMNEA-----SH-SPTVF-TYNILINGLCKYGLVDRAINSFNQMVSK-----N-C-Q 394 (577)
Q Consensus 329 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~-~ 394 (577)
+...+...|...|+++.|..+++...+. |. .|.+. ..+.+...|...+++++|..+|+++... | . +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4455666666667777666666655443 11 12222 2234666777888888888888887653 2 1 1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-----C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCC
Q 008105 395 PDIVTYNTVLGALCKEGMLNEALQLLHLLNGS-----S-CSPCL-ITYNTLIDGLAKKGCMEKAMVLYGQMMEN---GIS 464 (577)
Q Consensus 395 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~ 464 (577)
.-..+++.|..+|.+.|++++|...++...+. + ..|.+ ..++.+...|...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 12345666677788888888877776654321 1 12222 23566777788889999999988877541 122
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC--Cc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHH---
Q 008105 465 PD----DITHRTLIWGFCRADQVEEAVDLLKEIGKR----GN--KM-RNSAYRLVIHGLCKSKKVDMAIQVLELMIS--- 530 (577)
Q Consensus 465 p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--- 530 (577)
++ ..+++.|...|...|++++|.++++++... +. .+ ....++.+...|.+.+++.+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 23 357889999999999999999999987652 11 11 234567788899999999999999987653
Q ss_pred -CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105 531 -SR-YKPD-DTVFSTIVKKVADDGMTEEAYKLWQKLIE 565 (577)
Q Consensus 531 -~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (577)
.| ..|+ ..+|..|...|.+.|++++|+++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 12 1233 46788999999999999999999888863
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.25 E-value=4.4e-08 Score=98.66 Aligned_cols=128 Identities=14% Similarity=0.094 Sum_probs=76.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008105 366 NILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKK 445 (577)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 445 (577)
..+...|...|++++|++.+++.++.. +..+..|..-...+-+.|++.+|.+.++.....+ .-|...-+-.+..+.+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHC
Confidence 444555666677777777777666652 2235556666666666777777777776666655 44556666666666677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105 446 GCMEKAMVLYGQMMENGISPDDI------TH--RTLIWGFCRADQVEEAVDLLKEIGK 495 (577)
Q Consensus 446 g~~~~A~~~~~~m~~~g~~p~~~------~~--~~li~~~~~~g~~~~A~~~~~~m~~ 495 (577)
|++++|.+++....+.+..|-.. .| .....+|.+.|++..|++.|..+.+
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777777666665544322211 11 3344556667777766666655543
No 71
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=1.8e-11 Score=81.68 Aligned_cols=50 Identities=34% Similarity=0.503 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 008105 115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIR 164 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~ 164 (577)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.4e-09 Score=97.68 Aligned_cols=230 Identities=8% Similarity=-0.051 Sum_probs=193.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008105 295 YNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCK 374 (577)
Q Consensus 295 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 374 (577)
-+.+..+|.+.|.+.+|.+.++..++. .|-..||..|-++|.+..+.+.|..++.+-.+.- +-++....-+...+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 356788999999999999999998887 6667788889999999999999999999888752 3454444566777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008105 375 YGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVL 454 (577)
Q Consensus 375 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 454 (577)
.++.++|.++|+...+.. +.++.....+...|.-.++.+.|++.++.+.+.| ..+...|+.+.-+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 899999999999999875 6677788888888888999999999999999998 44678899998889999999999999
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105 455 YGQMMENGISPD--DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 455 ~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 530 (577)
|++....--.|+ ...|-.+.......|++.-|.+.|+-....+.. +...++.+.-.-.+.|++++|..++....+
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 999886543344 456878888888899999999999988876533 678899998888999999999999998874
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.24 E-value=2.6e-08 Score=100.27 Aligned_cols=292 Identities=16% Similarity=0.191 Sum_probs=207.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 008105 124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKR--- 200 (577)
Q Consensus 124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~--- 200 (577)
...+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.+ +.+...|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 45668899999999999876554 33344555667788999999999999999999987 34555566666665322
Q ss_pred --CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008105 201 --GQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFK-QAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAI 277 (577)
Q Consensus 201 --g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 277 (577)
.+.+...++++++... -|.......+.-.+.....+. .+..++..++.+|+|+ +|+.|-..|......+-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 2567778889888765 354444443433333323333 4556667778888664 5555555565555555555
Q ss_pred HHHHHHHHc----C----------CCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHcc
Q 008105 278 EVLDDMAIE----G----------CSPDIV--TYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPN-SITYNTLLHSLGSR 340 (577)
Q Consensus 278 ~~~~~~~~~----~----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 340 (577)
+++...... + -+|+.. ++..+...|-..|++++|++++++.+++ .|+ ...|..-.+.+-+.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence 555554432 1 134443 4456678888999999999999999988 565 45788888999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHhcCC
Q 008105 341 GCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIV--------TYNTVLGALCKEGM 412 (577)
Q Consensus 341 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--------~~~~li~~~~~~g~ 412 (577)
|++.+|.+.++...+.+. -|...-+.....+.+.|+.++|.+++....+.+..|-.. -......+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999988764 477777778888999999999999999888776433221 12445678899999
Q ss_pred hhHHHHHHHHHhh
Q 008105 413 LNEALQLLHLLNG 425 (577)
Q Consensus 413 ~~~A~~~~~~~~~ 425 (577)
+..|++.|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999887766544
No 74
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=2.8e-11 Score=80.73 Aligned_cols=49 Identities=47% Similarity=0.812 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008105 430 PCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFC 478 (577)
Q Consensus 430 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 478 (577)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=9.4e-09 Score=102.15 Aligned_cols=244 Identities=19% Similarity=0.136 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-
Q 008105 222 VITYNTILRTMFDNGKFKQAIGFWKDQLRK-----G-CPPYLIT-YTILIEQVCKQCGIARAIEVLDDMAIE-----GC- 288 (577)
Q Consensus 222 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~- 288 (577)
..+...+...|...|+++.|+.+++..++. | ..|...+ .+.+...|...+++.+|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 344555667777777777777777766553 1 1122222 222445555666666666666655431 10
Q ss_pred CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHH
Q 008105 289 SP-DIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTV-FTYN 366 (577)
Q Consensus 289 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~ 366 (577)
.| -..+++.|..+|.+.|++++|...++...+. ++..... ..|.+ ..++
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~~~~~-~~~~v~~~l~ 329 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEKLLGA-SHPEVAAQLS 329 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHHhhcc-ChHHHHHHHH
Confidence 11 1234455555566666665555555443321 0000000 00111 1223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC-------CCCCH
Q 008105 367 ILINGLCKYGLVDRAINSFNQMVSK---NCQP----DIVTYNTVLGALCKEGMLNEALQLLHLLNGSS-------CSPCL 432 (577)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~---~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~p~~ 432 (577)
.+...+...+++++|..+++...+. -+.+ -..+++.+...|.+.|++++|.++++.+.... ..-..
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 3333444444444444444433321 0011 12345555555555555555555555443210 11123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105 433 ITYNTLIDGLAKKGCMEKAMVLYGQMME----NGI-SPD-DITHRTLIWGFCRADQVEEAVDLLKEIG 494 (577)
Q Consensus 433 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 494 (577)
..++.+...|.+.+++.+|.++|.+... .|. .|+ ..+|..|...|...|++++|.++.+...
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3455555666666666666666655432 221 122 3456666666666677766666666554
No 76
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=4.4e-07 Score=82.81 Aligned_cols=382 Identities=12% Similarity=0.126 Sum_probs=241.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCh
Q 008105 159 IRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKF 238 (577)
Q Consensus 159 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~ 238 (577)
+.-+....++..|+.+++.-...+-.....+-.-+...+...|++++|...+.-+.+.. .++...+..|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 34455677888899988877654422221222223456778999999999999887755 67788888888888888999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105 239 KQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNL 318 (577)
Q Consensus 239 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 318 (577)
.+|..+-.+. +.++.....|+....+.++-++...+-+.+... ..---+|.+.....-.+.+|++++...
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9998775542 445555566666677788877777766666432 122334555555556789999999999
Q ss_pred hhCCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CCHHHHH--H----------
Q 008105 319 LSRGMEPNSITYNTLL-HSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKY--GLVDRAI--N---------- 383 (577)
Q Consensus 319 ~~~g~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~--~---------- 383 (577)
+.. .|+-...|.-+ -+|.+..-++-+.++++-..+. ++.++...|.......+. |+..++. +
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~ 254 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP 254 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch
Confidence 876 45555555544 3567888888898888877765 334445555444433332 2221111 0
Q ss_pred HHHHHHHCC------------CCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008105 384 SFNQMVSKN------------CQP-----DIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKG 446 (577)
Q Consensus 384 ~~~~m~~~~------------~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 446 (577)
..+.+.+++ +-| =+.+-..++-.|.+.++..+|..+.+++... .|.......+.. +..|
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~--aalG 330 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVF--AALG 330 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHH--HHhh
Confidence 111111111 011 1223334555678889999999888777532 333333333322 2222
Q ss_pred -------CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCh
Q 008105 447 -------CMEKAMVLYGQMMENGISPDDI-THRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKV 518 (577)
Q Consensus 447 -------~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 518 (577)
.+.-|...|+-.-+.+..-|.. --.++...+.-..++++.+.+++.+...-...|...|+ +..+.+..|++
T Consensus 331 Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny 409 (557)
T KOG3785|consen 331 QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNY 409 (557)
T ss_pred hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcCh
Confidence 3555666666665555444432 23345555566668999999999888754444444444 78899999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHH
Q 008105 519 DMAIQVLELMISSRYKPDDTVFS-TIVKKVADDGMTEEAYKLW 560 (577)
Q Consensus 519 ~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~ 560 (577)
.+|+++|-+.....++ |..+|. .|.++|.+.++.+-|..++
T Consensus 410 ~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 410 VEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 9999999887643333 555665 5677899999999887664
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.1e-06 Score=81.95 Aligned_cols=266 Identities=8% Similarity=-0.037 Sum_probs=106.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 008105 254 PPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDI-VTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNT 332 (577)
Q Consensus 254 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 332 (577)
+-|......+.+.+...|+.++|...|+..... .|+. .........+.+.|+.++...+...+.... +-....|-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 334444455555555555555555555554433 1211 111111222334444444444444443321 011111211
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008105 333 LLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGM 412 (577)
Q Consensus 333 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 412 (577)
-....-..+++..|..+-+..++.+ +.+...+-.-...+.+.+++++|.-.|+...... +-+...|..|+..|...|.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 1222223344444444444444332 1223333333344444455555555554444331 2344445555555555555
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 008105 413 LNEALQLLHLLNGSSCSPCLITYNTLI-DGLAK-KGCMEKAMVLYGQMMENGISPDD-ITHRTLIWGFCRADQVEEAVDL 489 (577)
Q Consensus 413 ~~~A~~~~~~~~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~ 489 (577)
+.+|...-+...+. ++.+..+.+.+. ..+.- ..--++|.++++.-.+. .|+. ...+.+...+...|..+++..+
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHH
Confidence 55544443332221 122233333331 11111 11123444444444331 2332 2333344444444555555555
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008105 490 LKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMI 529 (577)
Q Consensus 490 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 529 (577)
+++.... .||....+.+.+.+...+.+++|.+.|...+
T Consensus 461 Le~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 461 LEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5444332 3444444444444444445555555444444
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=6.2e-06 Score=80.69 Aligned_cols=393 Identities=15% Similarity=0.085 Sum_probs=228.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008105 155 CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD 234 (577)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 234 (577)
+.+=++.+.+.|++++|.+....++..+ +-|...+..=+-++.+.+++++|+.+.+.-... ..+..-+---.-+..+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHH
Confidence 3444566778899999999999999877 556667777777888999999999666543311 1111111112234456
Q ss_pred CCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008105 235 NGKFKQAIGFWKDQLRKGCPP-YLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVL 313 (577)
Q Consensus 235 ~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 313 (577)
.+..++|+..++- ..+ +..+...-...+.+.|++++|+++|+.+.+.+.+ + +...+.+-+..- ..+..
T Consensus 92 lnk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~--~a~l~ 160 (652)
T KOG2376|consen 92 LNKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAV--AAALQ 160 (652)
T ss_pred cccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHH--HHhhh
Confidence 8999999998872 232 3335556667788999999999999999877532 2 222222111100 01111
Q ss_pred HHHHHhhCCCCCCHHHHHHHHH---HHHccCCHHHHHHHHHHHHhC-------CCCCCHH-------HHHHHHHHHHHcC
Q 008105 314 VINNLLSRGMEPNSITYNTLLH---SLGSRGCWDAVDKILDIMNEA-------SHSPTVF-------TYNILINGLCKYG 376 (577)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~-------~~~~li~~~~~~g 376 (577)
. ..+......| ..+|..+.+ .+...|++.+|+++++...+. +-..+.. .--.|.-.+-..|
T Consensus 161 ~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 161 V-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred H-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 1 1122222233 334444333 456789999999999887221 1111111 1122344566789
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhc------------------------------------------
Q 008105 377 LVDRAINSFNQMVSKNCQPDIVTY----NTVLGALCKE------------------------------------------ 410 (577)
Q Consensus 377 ~~~~A~~~~~~m~~~~~~~~~~~~----~~li~~~~~~------------------------------------------ 410 (577)
+.++|..++...++.. ++|.... |.++..-...
T Consensus 239 qt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred chHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 3443211 1111110000
Q ss_pred ---CChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008105 411 ---GMLNEALQLLHLLNGSSCSPCLITYNTLIDGLA--KKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEE 485 (577)
Q Consensus 411 ---g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 485 (577)
+..+.+.++.... .+..|. ..+..++..+. +...+.++.+++...-+..-.-.......++......|+++.
T Consensus 318 l~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 318 LFTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred HHhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence 0000011000000 011222 23334443332 222467777777777664322224455666777888999999
Q ss_pred HHHHHH--------HHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHhcC
Q 008105 486 AVDLLK--------EIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISS--RYKPDDT----VFSTIVKKVADDG 551 (577)
Q Consensus 486 A~~~~~--------~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~----~~~~l~~~~~~~g 551 (577)
|.+++. .+.+.+..|- +...+...+.+.++-+.|..++.+.+.. .-.+... ++.-++..-.+.|
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 999999 5555544444 4556777788888888788888777641 1122222 3333444456779
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 008105 552 MTEEAYKLWQKLIEWKVF 569 (577)
Q Consensus 552 ~~~~A~~~~~~~~~~~~~ 569 (577)
+-++|..+++++.+.++.
T Consensus 473 ~~~ea~s~leel~k~n~~ 490 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNPN 490 (652)
T ss_pred chHHHHHHHHHHHHhCCc
Confidence 999999999999996654
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=6.4e-06 Score=77.01 Aligned_cols=291 Identities=12% Similarity=0.044 Sum_probs=189.5
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHccCCHHHHH
Q 008105 270 QCGIARAIEVLDDMAIE-GCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSIT-YNTLLHSLGSRGCWDAVD 347 (577)
Q Consensus 270 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~ 347 (577)
.++...|...+-.+... -++-++.....+...+...|+.++|...|++.... .|+..+ .....-.+...|+.+...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHH
Confidence 34444444444333332 24456677778888888888888888888887755 333332 111222345677777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 008105 348 KILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSS 427 (577)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 427 (577)
.+...+..... -....|-.-........++..|+.+-++.++.+ +.+...+-.-...+...++.++|.-.|+......
T Consensus 287 ~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 287 ALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 77776654321 122333333444455677888888888777664 4455555555566777888888888888776653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHhhCCCCcc-HHH
Q 008105 428 CSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLI-WGFC-RADQVEEAVDLLKEIGKRGNKMR-NSA 504 (577)
Q Consensus 428 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~~~~~~-~~~ 504 (577)
+-+..+|..|+..|...|.+.+|..+-....+. ++.+..+...+. ..+. ...--++|.+++++..+. .|+ ...
T Consensus 365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~A 440 (564)
T KOG1174|consen 365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPA 440 (564)
T ss_pred -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHH
Confidence 456778888888888888888887776665543 234555555442 2332 222346788888776653 333 345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008105 505 YRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFE 570 (577)
Q Consensus 505 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 570 (577)
.+.+...|...|+.++++.++++.+. ..||....+.|.+.+...+.+++|.+.|...+..+|..
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 56677778888888888888888773 47888888888888888888888888888877766553
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=9.6e-08 Score=91.05 Aligned_cols=118 Identities=8% Similarity=-0.053 Sum_probs=55.4
Q ss_pred CChhhHHHHHHHHHHcCC-CC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008105 131 GKLTDASKLIDIMARRNQ-IP--DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAI 207 (577)
Q Consensus 131 g~~~~A~~l~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 207 (577)
+..+.++.-+.+++.... .| ....|..+...+.+.|++++|...|++.++.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445555555555554321 11 12334444444555555555555555555443 223445555555555555555555
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 008105 208 ALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLR 250 (577)
Q Consensus 208 ~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 250 (577)
+.|++..+.. +.+..+|..+..++...|++++|++.|++..+
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555554432 22334444444444445555555555554444
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=1e-07 Score=90.89 Aligned_cols=226 Identities=12% Similarity=0.006 Sum_probs=146.4
Q ss_pred CCHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 008105 166 DRIEKASKVLQIMVMSGG-VP--DTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAI 242 (577)
Q Consensus 166 g~~~~A~~~~~~~~~~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~ 242 (577)
++.+.++.-+.+++.... .| ....|..+...|.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 355666667767765321 11 24557777778888888888888888888764 456788888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 008105 243 GFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRG 322 (577)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 322 (577)
+.|++.++.. |-+..++..+...+...|++++|.+.|+...+.. |+..............++.++|...+++.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 8888888653 4456777778888888888888888888888763 433222222223445677888888886655332
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 008105 323 MEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEA---SH---SPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPD 396 (577)
Q Consensus 323 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 396 (577)
.|+...+ .+. ....|+...+ ..++.+.+. .. +.....|..+...+.+.|++++|+..|++..+.+ +||
T Consensus 196 -~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~ 269 (296)
T PRK11189 196 -DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYN 269 (296)
T ss_pred -CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cch
Confidence 2232221 222 2234554443 244444321 11 1233578888888888888888888888888775 334
Q ss_pred HHHHH
Q 008105 397 IVTYN 401 (577)
Q Consensus 397 ~~~~~ 401 (577)
..-+.
T Consensus 270 ~~e~~ 274 (296)
T PRK11189 270 FVEHR 274 (296)
T ss_pred HHHHH
Confidence 44333
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.11 E-value=1.4e-07 Score=81.29 Aligned_cols=194 Identities=14% Similarity=0.019 Sum_probs=95.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 008105 158 LIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGK 237 (577)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 237 (577)
|.-.|.+.|++..|..-+++.++.. +.+..+|..+...|-+.|+.+.|.+.|++..... +.+..+.|.....+|.+|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence 3344445555555555555555443 2233445555555555555555555555554442 3344445555555555555
Q ss_pred hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 008105 238 FKQAIGFWKDQLRKG-CPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVIN 316 (577)
Q Consensus 238 ~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 316 (577)
+++|...|++....- ...-..+|..+.-+..+.|+.+.|.+.|++..+.. +-...+...+.....+.|++..|...++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 555555555544431 11123344444444555555555555555555442 1122344445555555555555555555
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 008105 317 NLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNE 355 (577)
Q Consensus 317 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 355 (577)
.....+. ++..+.-..|+.-...|+.+.+.+.=.++..
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5554443 4555555555555555555555554444443
No 83
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=8.1e-07 Score=79.25 Aligned_cols=291 Identities=13% Similarity=0.092 Sum_probs=183.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHH
Q 008105 119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNM-MVGGL 197 (577)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-li~~~ 197 (577)
-+++++..+.+..++++|++++..-.++.++ +....+.+..+|....++..|-..++++-.. .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 3677888889999999999999988887532 7778888999999999999999999999765 445444432 24556
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH--HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008105 198 CKRGQIRSAIALLDEMSVSGCEPDVITYNTILR--TMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR 275 (577)
Q Consensus 198 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 275 (577)
-+.+.+.+|+.+...|... ++...-..-+. .....+++..+..+.++....| +..+.+.......+.|+++.
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 6889999999999888642 22222222222 2345788888888888765443 44555555556678999999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-------------CCHH--------HHHHHH
Q 008105 276 AIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGME-------------PNSI--------TYNTLL 334 (577)
Q Consensus 276 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------------p~~~--------~~~~ll 334 (577)
|.+-|+...+-+--.....||..+. ..+.|+++.|++...++.++|++ ||.. .-+.++
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 9999999887543334567776554 45778899999999999888754 1211 111222
Q ss_pred -------HHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008105 335 -------HSLGSRGCWDAVDKILDIMNEA-SHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGA 406 (577)
Q Consensus 335 -------~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 406 (577)
..+.+.++++.|.+.+.+|.-+ ....|++|...+.-. --.+++.+..+-+.-+...+ +-...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 2234455566665555555422 122344444332211 11233333344444444433 2334555555556
Q ss_pred HHhcCChhHHHHHHH
Q 008105 407 LCKEGMLNEALQLLH 421 (577)
Q Consensus 407 ~~~~g~~~~A~~~~~ 421 (577)
||++.-++-|-.++-
T Consensus 320 yCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLA 334 (459)
T ss_pred HhhhHHHhHHHHHHh
Confidence 666655555555543
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.08 E-value=1.9e-07 Score=80.50 Aligned_cols=198 Identities=14% Similarity=-0.015 Sum_probs=138.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008105 365 YNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAK 444 (577)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 444 (577)
...|.-.|.+.|+...|..-+++.++.+ +.+..+|..+...|-+.|+.+.|.+.|+...+.. +.+..+.|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 4455666777777777777777777764 5566677777777777777777777777777664 4456667777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHH
Q 008105 445 KGCMEKAMVLYGQMMENGIS-PDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQ 523 (577)
Q Consensus 445 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 523 (577)
.|++++|...|++....-.- --..+|..+..+..+.|+.+.|.+.|++..+.+.. .......+.......|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 77888888887777764211 12456777777777778888888888777765432 34455667777777788888887
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105 524 VLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEW 566 (577)
Q Consensus 524 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (577)
+++.....+ .++.......++.-.+.|+.+.+-++=..+...
T Consensus 195 ~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 195 YLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 777776644 377777777777777778777777766666553
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.08 E-value=1.3e-06 Score=86.36 Aligned_cols=200 Identities=12% Similarity=0.053 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105 117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQI-PDF-HFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV 194 (577)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 194 (577)
...|..+...+...|+.+++.+.+.+..+.... ++. .........+...|++++|.+.+++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 456677777788888888887777776654321 121 122222344567899999999999988764 334444442 2
Q ss_pred HHHH----hcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008105 195 GGLC----KRGQIRSAIALLDEMSVSGCEPD-VITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCK 269 (577)
Q Consensus 195 ~~~~----~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 269 (577)
..+. ..+..+.+.+.++... ...|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 2222 2455555555555421 11233 3444556677888899999999999988764 5566777888888888
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105 270 QCGIARAIEVLDDMAIEGC-SPDI--VTYNSLVNFSCKQGKYDDAVLVINNLLSR 321 (577)
Q Consensus 270 ~g~~~~A~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 321 (577)
.|++++|...+++...... .|+. ..|..+...+...|++++|..++++....
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 9999999998888776432 1222 34556777888889999999888887544
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=5.6e-07 Score=80.23 Aligned_cols=392 Identities=14% Similarity=0.091 Sum_probs=248.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH-HHHHH
Q 008105 154 FCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNT-ILRTM 232 (577)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-li~~~ 232 (577)
-+.+.+..+++..++..|++++..-.+.. +.+....+.|..+|-...++..|-+.++++... .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 46777888899999999999999888775 347778888999999999999999999999865 566655543 34567
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH
Q 008105 233 FDNGKFKQAIGFWKDQLRKGCPPYLITYTILIE--QVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDD 310 (577)
Q Consensus 233 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 310 (577)
.+.+.+..|+.+...|... ++...-..-+. .....+++..+..+.++....| +..+.+...-...+.|+++.
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 7889999999999887643 22222222222 2335688888888888877543 45556666666779999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-------------CH---------------
Q 008105 311 AVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSP-------------TV--------------- 362 (577)
Q Consensus 311 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~--------------- 362 (577)
|.+-|+...+-+---....|+..+.. .+.++.+.|.+...++.++|++. |+
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 99999998876433356677776644 46789999999999998876531 11
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008105 363 FTYNILINGLCKYGLVDRAINSFNQMVSK-NCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDG 441 (577)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 441 (577)
..+|.-...+.+.++.+.|.+.+-+|.-+ ....|++|...+.-.- ..+++.+..+-+.-+.+... -...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 11233334456788999999888888643 2345777766554322 23456666666666666543 346788899999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHH-HhcCCh
Q 008105 442 LAKKGCMEKAMVLYGQMMENGIS-PDDITHRTLIWGFC-RADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGL-CKSKKV 518 (577)
Q Consensus 442 ~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~~ 518 (577)
||+..-++.|-+++.+-...-.. .+...|+ |++++. ..-..++|.+-+..+...- ....-...+..- .+..+-
T Consensus 320 yCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~vQe~r~~~d 395 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQVQEARHNRD 395 (459)
T ss_pred HhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccc
Confidence 99999999998887653321110 1233333 334433 2345666666555443210 000000111110 112221
Q ss_pred HH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105 519 DM----AIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIE 565 (577)
Q Consensus 519 ~~----A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (577)
+. |++-+++.++ .-..+..+-.+.+.+..++..+++.|..-.+
T Consensus 396 d~a~R~ai~~Yd~~LE----~YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 396 DEAIRKAVNEYDETLE----KYLPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 11 2222222221 1112233444567788888899998887765
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.07 E-value=1.7e-06 Score=85.53 Aligned_cols=202 Identities=17% Similarity=0.130 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCH--HHHHHHHH
Q 008105 364 TYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSC-SPCL--ITYNTLID 440 (577)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~--~~~~~li~ 440 (577)
....+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++....... .|+. ..|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 33344455666677777777777666653 34455566666666667777777776666554321 1221 23445566
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHH-hhCCC-CccHHHHHHHHHHH
Q 008105 441 GLAKKGCMEKAMVLYGQMMENGI-SPDDITH-R--TLIWGFCRADQVEEAVDL--LKEI-GKRGN-KMRNSAYRLVIHGL 512 (577)
Q Consensus 441 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~-~--~li~~~~~~g~~~~A~~~--~~~m-~~~~~-~~~~~~~~~li~~~ 512 (577)
.+...|++++|..++++...... .+..... + .++.-+...|..+.+.+. +... ..... ............++
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~ 274 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL 274 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 66677777777777777643221 1111111 1 222223333432222222 1111 11100 11111222456667
Q ss_pred HhcCChHHHHHHHHHHHHCCCC------C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105 513 CKSKKVDMAIQVLELMISSRYK------P--DDTVFSTIVKKVADDGMTEEAYKLWQKLIEW 566 (577)
Q Consensus 513 ~~~g~~~~A~~~~~~m~~~~~~------p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (577)
...|+.++|..+++.+...... . ..........++...|+.++|.+.+...+..
T Consensus 275 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 275 AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888888887652211 0 1122222334567888888888888877654
No 88
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.01 E-value=5e-06 Score=83.83 Aligned_cols=409 Identities=12% Similarity=0.035 Sum_probs=274.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008105 113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNM 192 (577)
Q Consensus 113 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 192 (577)
+..|...|..|.-++..+|+++.+.+.|++....- .-....|..+...|...|.-..|..++++-......|+..+--.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 45789999999999999999999999999988753 34777899999999999999999999998876543354333333
Q ss_pred HH-HHHH-hcCChHHHHHHHHHHhhC--CC--CCCHHHHHHHHHHHHhC-----------CChHHHHHHHHHHHHCCCCC
Q 008105 193 MV-GGLC-KRGQIRSAIALLDEMSVS--GC--EPDVITYNTILRTMFDN-----------GKFKQAIGFWKDQLRKGCPP 255 (577)
Q Consensus 193 li-~~~~-~~g~~~~A~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------~~~~~A~~~~~~~~~~~~~~ 255 (577)
++ ..|. +.|.+++++..-.+.... +. ......|..+.-+|... ....++++.+++..+.+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-T 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-C
Confidence 33 3333 456777777766666541 11 23455566665555432 224578899999888652 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCC----------
Q 008105 256 YLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSR-GME---------- 324 (577)
Q Consensus 256 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~---------- 324 (577)
|+.+.-.+.--|+..++++.|.+...+..+.+-.-+...|..|.-.+...+++.+|+.+.+..... |..
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 333333344457888999999999999998866778899999999999999999999998877654 110
Q ss_pred --------CCHHHHHHHHHHHHcc------CCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008105 325 --------PNSITYNTLLHSLGSR------GCWDAVDKILDIMNEA--SHSPTVFTYNILINGLCKYGLVDRAINSFNQM 388 (577)
Q Consensus 325 --------p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 388 (577)
--..|...++..+-.. ++-....+....+.-. .......++..+..-... +...+..-.. +
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~~-L 633 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSELK-L 633 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhcccccc-c
Confidence 0112222233222211 1111111111111100 111123344333332221 1111110011 2
Q ss_pred HHCCCC--CC------HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105 389 VSKNCQ--PD------IVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMME 460 (577)
Q Consensus 389 ~~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 460 (577)
....+. |+ ...|......+.+.+..++|..-+.+..... +-....|......+...|..++|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 222222 22 2346667778888899999987777776653 55567777777888899999999999999887
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105 461 NGISPD-DITHRTLIWGFCRADQVEEAVD--LLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 461 ~g~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 530 (577)
. .|+ +....++...+.+.|+..-|.. ++.++.+.+. .+...|..+...+-+.|+.+.|.+.|....+
T Consensus 713 l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 713 L--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred c--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 4 454 6678899999999998777777 9999998764 4788999999999999999999999998875
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.98 E-value=7.8e-06 Score=91.68 Aligned_cols=336 Identities=11% Similarity=0.015 Sum_probs=206.8
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCCH--hhHHHHHHHHH
Q 008105 232 MFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGC------SPDI--VTYNSLVNFSC 303 (577)
Q Consensus 232 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~--~~~~~li~~~~ 303 (577)
....|+++.+...++.+.......+..........+...|++++|...+......-- .+.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 444677776666665542111111222223344455678899999998887754310 1111 11222334566
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHH
Q 008105 304 KQGKYDDAVLVINNLLSRGMEPNS----ITYNTLLHSLGSRGCWDAVDKILDIMNEA----SHS-PTVFTYNILINGLCK 374 (577)
Q Consensus 304 ~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~ 374 (577)
..|++++|...+++....-...+. ...+.+...+...|++++|...+++.... +.. ....++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 889999999999987763212221 23455566677899999999988877643 111 112344556677888
Q ss_pred cCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCC--CHHHHHHHHHHHH
Q 008105 375 YGLVDRAINSFNQMVSK----NCQ--P-DIVTYNTVLGALCKEGMLNEALQLLHLLNGSS--CSP--CLITYNTLIDGLA 443 (577)
Q Consensus 375 ~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p--~~~~~~~li~~~~ 443 (577)
.|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998876652 211 1 22334455566777899999998888765421 112 2334455666778
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc---HHHHHHHHHHHHh
Q 008105 444 KKGCMEKAMVLYGQMMENGI-SPDDITH-----RTLIWGFCRADQVEEAVDLLKEIGKRGNKMR---NSAYRLVIHGLCK 514 (577)
Q Consensus 444 ~~g~~~~A~~~~~~m~~~g~-~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~ 514 (577)
..|++++|.+.+++.....- ......+ ...+..+...|+.+.|.+++........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 89999999999888754210 0111111 1122444567899999998877654221111 1113456777888
Q ss_pred cCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008105 515 SKKVDMAIQVLELMISS----RYKPD-DTVFSTIVKKVADDGMTEEAYKLWQKLIEWK 567 (577)
Q Consensus 515 ~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (577)
.|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+.++..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999988752 33322 3456667778999999999999999888754
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.96 E-value=9.9e-06 Score=90.88 Aligned_cols=335 Identities=12% Similarity=0.020 Sum_probs=174.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC------CCCH--HHHHHHHHHHH
Q 008105 162 LIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGC------EPDV--ITYNTILRTMF 233 (577)
Q Consensus 162 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~------~~~~--~~~~~li~~~~ 233 (577)
+...|+++.+..+++.+.......+..........+...|++++|..+++...+.-- .+.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566666666655542111111222223334445567777887777776543200 0111 11122233445
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CC--CHhhHHHHHHHHHh
Q 008105 234 DNGKFKQAIGFWKDQLRKGCPPYL----ITYTILIEQVCKQCGIARAIEVLDDMAIEGC---SP--DIVTYNSLVNFSCK 304 (577)
Q Consensus 234 ~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~li~~~~~ 304 (577)
..|++++|...+++....-...+. ...+.+...+...|++++|...+++.....- .+ ...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 677888888777776653111111 2334455556677888888777776654210 11 12334455566777
Q ss_pred cCCHHHHHHHHHHHhhC----CCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 008105 305 QGKYDDAVLVINNLLSR----GME--P-NSITYNTLLHSLGSRGCWDAVDKILDIMNEA----SHSPTVFTYNILINGLC 373 (577)
Q Consensus 305 ~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~ 373 (577)
.|++++|...+++.... +.. + ....+..+...+...|++++|...+++.... +.......+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 78888887777665442 211 1 1223334445556667888877777665432 11111233344555666
Q ss_pred HcCCHHHHHHHHHHHHHCCC-CCCHHHH-----HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHh
Q 008105 374 KYGLVDRAINSFNQMVSKNC-QPDIVTY-----NTVLGALCKEGMLNEALQLLHLLNGSSCSPCL---ITYNTLIDGLAK 444 (577)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~~~-~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~li~~~~~ 444 (577)
..|+.++|...+.+...... ......+ ...+..+...|+.+.|...+............ ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 77788878777776643210 0000101 11123344467777777776655432211111 113445566677
Q ss_pred cCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105 445 KGCMEKAMVLYGQMMEN----GISPD-DITHRTLIWGFCRADQVEEAVDLLKEIGKR 496 (577)
Q Consensus 445 ~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 496 (577)
.|++++|...+++.... |..++ ..+...+..++.+.|+.++|.+.+.+..+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777776542 22221 234555566677778877777777777653
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.94 E-value=8.1e-06 Score=74.50 Aligned_cols=198 Identities=13% Similarity=0.072 Sum_probs=110.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHH-
Q 008105 221 DVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTIL---IEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYN- 296 (577)
Q Consensus 221 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~- 296 (577)
++.----+...+...|++..|+.-|...++. |+..|.++ ...|...|+...|+.-+...++. +||-..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 4444455667777788888888888877653 33444443 44677788888888888877765 56643221
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH--HHH------------HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 008105 297 SLVNFSCKQGKYDDAVLVINNLLSRGMEPNS--ITY------------NTLLHSLGSRGCWDAVDKILDIMNEASHSPTV 362 (577)
Q Consensus 297 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 362 (577)
.-...+.++|.+++|..-|+..++....-+. ..+ ...+..+...|+...|......+.+.. +.+.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 1234577888888888888888876322111 111 112223344455555555555555542 2344
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 008105 363 FTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGS 426 (577)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 426 (577)
..+..-..+|...|++..|+.=++...+.. ..+..++--+-..+...|+.+.++...++..+.
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 445555555555555555555544444332 233444444444555555555555555555443
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=4.6e-06 Score=80.79 Aligned_cols=384 Identities=14% Similarity=0.049 Sum_probs=203.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 008105 124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPD-TITYNMMVGGLCKRGQ 202 (577)
Q Consensus 124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~ 202 (577)
.++.+..|+++.|+.+|-+.+...+. |...|..-..+|...|++++|++=-.+-++. .|+ ..-|+....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 46778899999999999998887544 8888888999999999999998877666655 444 3467888888888899
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHH-HHH
Q 008105 203 IRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCG-IARAI-EVL 280 (577)
Q Consensus 203 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~-~~~ 280 (577)
+++|+..|.+-.+.. +.+...++-+..++. .+.+. +. ...++..|..+..--....- .+.+. .++
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 999999999888764 445666676776661 11111 10 01122222222110000000 01111 111
Q ss_pred HHHHHcCCCCCHhhH---HHHHHHHHhcCCHHHH-HHHHHHHh-hCCCCC----------------------CHHHHHHH
Q 008105 281 DDMAIEGCSPDIVTY---NSLVNFSCKQGKYDDA-VLVINNLL-SRGMEP----------------------NSITYNTL 333 (577)
Q Consensus 281 ~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A-~~~~~~m~-~~g~~p----------------------~~~~~~~l 333 (577)
+.+. .+ +-+...| ..++.+.......+.- ...-..+. ..+..| -..-...+
T Consensus 153 ~~~~-~~-p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~l 230 (539)
T KOG0548|consen 153 EIIQ-KN-PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKEL 230 (539)
T ss_pred HHhh-cC-cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHH
Confidence 1111 10 0000000 0111111100000000 00000000 000001 01123445
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHH
Q 008105 334 LHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNT-------VLGA 406 (577)
Q Consensus 334 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-------li~~ 406 (577)
.++..+..+++.+.+.++...+.. .+..-++....+|...|.+.+....-....+.| .-...-|+. +..+
T Consensus 231 gnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 231 GNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHHHhhhh
Confidence 666667777888888888777654 355556666677777777777766666655554 112222222 3335
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHHHH-------------------------HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008105 407 LCKEGMLNEALQLLHLLNGSSCSPCLITY-------------------------NTLIDGLAKKGCMEKAMVLYGQMMEN 461 (577)
Q Consensus 407 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-------------------------~~li~~~~~~g~~~~A~~~~~~m~~~ 461 (577)
|.+.++++.|...|.+.......|+..+- ..-...+.+.|++..|...|.++++.
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 55667778888877766554434332221 11123344556666666666666655
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105 462 GISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 462 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 530 (577)
. +-|...|....-+|.+.|.+..|++-.+...+.+ ++....|..=..++....++++|.+.|++.++
T Consensus 388 ~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 388 D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 3345566666666666666666666655555542 12233343334444445566666666666654
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=8.4e-06 Score=79.01 Aligned_cols=364 Identities=13% Similarity=0.048 Sum_probs=219.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105 114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMM 193 (577)
Q Consensus 114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 193 (577)
++|-+.|..=..+|.+.|++++|++=-.+-++.. +.....|+-...++.-.|++++|+.-|.+-++.. +.+...++-+
T Consensus 33 p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl 110 (539)
T KOG0548|consen 33 PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGL 110 (539)
T ss_pred CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhH
Confidence 4588899999999999999999998777777653 3367889999999999999999999999998875 4567777888
Q ss_pred HHHHHhcCChHHH-HHHHHHHhhCCCCCCHHHHHHHH-----HHHHhCCChHHHHHHHHHHHHCCCCCCHHHH---HHHH
Q 008105 194 VGGLCKRGQIRSA-IALLDEMSVSGCEPDVITYNTIL-----RTMFDNGKFKQAIGFWKDQLRKGCPPYLITY---TILI 264 (577)
Q Consensus 194 i~~~~~~g~~~~A-~~~~~~~~~~g~~~~~~~~~~li-----~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~l~ 264 (577)
.+++. .+.+ .+.| .++..|..+. +.+.....+..-++.+.. + +-+...| ..++
T Consensus 111 ~~a~~----~~~~~~~~~---------~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~----~-p~~l~~~l~d~r~m 172 (539)
T KOG0548|consen 111 AQAYL----EDYAADQLF---------TKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK----N-PTSLKLYLNDPRLM 172 (539)
T ss_pred HHhhh----HHHHhhhhc---------cCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc----C-cHhhhcccccHHHH
Confidence 87771 1111 1111 1111221111 111111111111111111 0 0000000 0011
Q ss_pred HHHHHcCCHHHH-HHHHHHHHH-cCCCC----------------------CHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105 265 EQVCKQCGIARA-IEVLDDMAI-EGCSP----------------------DIVTYNSLVNFSCKQGKYDDAVLVINNLLS 320 (577)
Q Consensus 265 ~~~~~~g~~~~A-~~~~~~~~~-~~~~~----------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 320 (577)
.+.......+.- ...-..+.. .+..| -..-...+.++..+..+++.|.+-+.....
T Consensus 173 ~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~e 252 (539)
T KOG0548|consen 173 KADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALE 252 (539)
T ss_pred HHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 111000000000 000000000 00000 112245567777788888888888888776
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 008105 321 RGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFT-------YNILINGLCKYGLVDRAINSFNQMVSKNC 393 (577)
Q Consensus 321 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 393 (577)
.. -+..-++....+|...|.+.......+...+.|.. ...- +..+..+|.+.++++.|+..|.+.+....
T Consensus 253 l~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R 329 (539)
T KOG0548|consen 253 LA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHR 329 (539)
T ss_pred Hh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc
Confidence 64 34444555666777788777777666665555421 1112 22344466667788888888888776544
Q ss_pred CCCHHHH-------------------------HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 008105 394 QPDIVTY-------------------------NTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCM 448 (577)
Q Consensus 394 ~~~~~~~-------------------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 448 (577)
.|+...- ..-...+.+.|++..|.+.+.+++... +.|...|..-.-+|.+.|.+
T Consensus 330 t~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~ 408 (539)
T KOG0548|consen 330 TPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEY 408 (539)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhH
Confidence 4443211 111334677899999999999999987 77899999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHH
Q 008105 449 EKAMVLYGQMMENGISPD-DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAY 505 (577)
Q Consensus 449 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 505 (577)
..|++=.+..++. .|+ ...|..=..++....+++.|.+.|.+..+.+ |+..-+
T Consensus 409 ~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~ 462 (539)
T KOG0548|consen 409 PEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEA 462 (539)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHH
Confidence 9999988888875 344 3345544555666678999999999988864 444433
No 94
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.92 E-value=7.2e-05 Score=72.69 Aligned_cols=424 Identities=11% Similarity=0.109 Sum_probs=223.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105 114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMM 193 (577)
Q Consensus 114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 193 (577)
+-|..+|+.||+-+... ..+++++.++++... ++.....|...|..-.+..+++...++|.+.+.. ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 35788999999988777 999999999999875 5557778888999999999999999999998765 3467777777
Q ss_pred HHHHHh-cCChHH----HHHHHHHHh-hCCCCC-CHHHHHHHHHHH---------HhCCChHHHHHHHHHHHHCCCCCCH
Q 008105 194 VGGLCK-RGQIRS----AIALLDEMS-VSGCEP-DVITYNTILRTM---------FDNGKFKQAIGFWKDQLRKGCPPYL 257 (577)
Q Consensus 194 i~~~~~-~g~~~~----A~~~~~~~~-~~g~~~-~~~~~~~li~~~---------~~~~~~~~A~~~~~~~~~~~~~~~~ 257 (577)
++---+ .|+... ..+.|+-.. +.|+.+ +-..|+..+..+ ..+.+.+...++|++++..-+.-=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 763322 333332 223333332 334332 233355544432 3334555566666666543111101
Q ss_pred HHHHHH------HHHH-------HHcCCHHHHHHHHHHHHH--cCCCCCHhhHHHHHHHHHhcCCHH--HHHHHHHHHhh
Q 008105 258 ITYTIL------IEQV-------CKQCGIARAIEVLDDMAI--EGCSPDIVTYNSLVNFSCKQGKYD--DAVLVINNLLS 320 (577)
Q Consensus 258 ~~~~~l------~~~~-------~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~ 320 (577)
..|+.. ++.. -+...+..|.++++++.. +|......+ .-..|-.+ +..+++....+
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHHHH
Confidence 111110 0000 011223334444443322 121111111 00001011 11111211111
Q ss_pred ----CCCC-CC--------HHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-------HH
Q 008105 321 ----RGME-PN--------SITYNTLLHSLGSR-GCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGL-------VD 379 (577)
Q Consensus 321 ----~g~~-p~--------~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~ 379 (577)
.++. .+ ..+|...+..+.-. .-|-++...+.... +.+...|+ .+
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s---------------~l~~~~~d~~~a~~~t~ 310 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEIS---------------DLLTEKGDVPDAKSLTD 310 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh---------------HHHHHhcccccchhhHH
Confidence 1111 00 00111111111000 00111111111110 11222222 34
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008105 380 RAINSFNQMVSKNCQPDIVTYNTVLGALCKEG---MLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYG 456 (577)
Q Consensus 380 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 456 (577)
++..+++.....-...+...|..+.+.--..- ..+.....++.+...-...-..+|..+++.-.+..-++.|..+|.
T Consensus 311 e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ 390 (656)
T KOG1914|consen 311 EAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFK 390 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHH
Confidence 55555655544322223333333332211111 234444555555443322234566777777777777888888888
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 008105 457 QMMENGISP-DDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKP 535 (577)
Q Consensus 457 ~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 535 (577)
+..+.+..+ ++...++++.-|| .++.+-|.++|+--.+.- .-+...-...++-+.+.++-..|..+|++.+..++.|
T Consensus 391 kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 391 KAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred HHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 888877666 6677777777665 467788888888755431 2233444667777888888888888888888776665
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105 536 D--DTVFSTIVKKVADDGMTEEAYKLWQKLIE 565 (577)
Q Consensus 536 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (577)
+ ..+|..++.-=..-|+...+.++-+++..
T Consensus 469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5 47788888888888888888888777654
No 95
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.88 E-value=4.6e-06 Score=83.23 Aligned_cols=223 Identities=15% Similarity=0.181 Sum_probs=116.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 008105 300 NFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVD 379 (577)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 379 (577)
.+.....++.+|+.+++.+..+. .-..-|..+...|+..|+++.|+++|.+.. .++-.|.+|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 34445555666666666665542 223345555666666666666666665332 2344566666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105 380 RAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMM 459 (577)
Q Consensus 380 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 459 (577)
.|.++-.+... .......|-+-..-+-+.|++.+|.+++-.+. .|+ ..|.+|-+.|..+..+++.++-.
T Consensus 809 da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhC
Confidence 66666554432 23344445444455556666666666554332 232 23556666666666665555432
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 008105 460 ENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTV 539 (577)
Q Consensus 460 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 539 (577)
.. .-..|...+..-+-..|+...|.+-|-+.. -|...++.|-..+.|++|.++-+.- | -.|..-
T Consensus 878 ~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakte---g-g~n~~k 941 (1636)
T KOG3616|consen 878 GD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTE---G-GANAEK 941 (1636)
T ss_pred hh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhcc---c-cccHHH
Confidence 11 112344445555666677777666654432 2344555666666666666654432 2 223333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 008105 540 FSTIVKKVADDGMTEEAYKLWQK 562 (577)
Q Consensus 540 ~~~l~~~~~~~g~~~~A~~~~~~ 562 (577)
....+++-.--| +.|.+++++
T Consensus 942 ~v~flwaksigg--daavkllnk 962 (1636)
T KOG3616|consen 942 HVAFLWAKSIGG--DAAVKLLNK 962 (1636)
T ss_pred HHHHHHHHhhCc--HHHHHHHHh
Confidence 334444433334 455665554
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=1.9e-07 Score=87.65 Aligned_cols=147 Identities=14% Similarity=0.085 Sum_probs=70.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCC
Q 008105 372 LCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAK----KGC 447 (577)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~ 447 (577)
+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++.. ...
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence 33445555555554432 234444455555555555555555555555432 12 222223332221 224
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCh-HHHHHHHH
Q 008105 448 MEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKV-DMAIQVLE 526 (577)
Q Consensus 448 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~ 526 (577)
+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+....+.. +..++..++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 55566666665432 3455555556666666666666666666655543322 444555555555555555 44555555
Q ss_pred HHH
Q 008105 527 LMI 529 (577)
Q Consensus 527 ~m~ 529 (577)
++.
T Consensus 261 qL~ 263 (290)
T PF04733_consen 261 QLK 263 (290)
T ss_dssp HCH
T ss_pred HHH
Confidence 554
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=0.00021 Score=72.87 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=47.2
Q ss_pred ChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCccccC
Q 008105 517 KVDMAIQVLELMISSRYKPD----DTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEKGTTLL 576 (577)
Q Consensus 517 ~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 576 (577)
+..+.++-...|.....-|+ ...|..|+..+....++..|-+.+++|..+.+..+..+++
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~~s~~v 1369 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVDLSTFV 1369 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccchhccc
Confidence 66667777777776554443 5678889999999999999999999999988877766653
No 98
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.84 E-value=2.2e-05 Score=81.44 Aligned_cols=182 Identities=12% Similarity=-0.018 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105 379 DRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQM 458 (577)
Q Consensus 379 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 458 (577)
..|+..+.+.++.. ..+...|+.|.-. ...|.+.-|..-|-.-.... +....+|..+.-.+.+..+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence 45666666666542 3455566655443 54556665555554444332 445677877777788888999999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--h--hCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH----
Q 008105 459 MENGISPDDITHRTLIWGFCRADQVEEAVDLLKEI--G--KRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS---- 530 (577)
Q Consensus 459 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---- 530 (577)
+... +.|...|......-...|+.-++..+|..- . ..|-.+....|.+...--..+|+.++-+...+.+..
T Consensus 877 qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 877 QSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred hhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 7642 234566666666666778888888888762 1 234455655665555556667776665554443322
Q ss_pred -----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105 531 -----SRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLI 564 (577)
Q Consensus 531 -----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 564 (577)
.+.+.+...|.+.....-+.+.+++|.++..+++
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 1444456778888888888888888887776654
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.83 E-value=1.7e-07 Score=87.95 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008105 343 WDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMV 389 (577)
Q Consensus 343 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 389 (577)
+.+|..+|+++.+. .++++.+.+.+..++...|++++|.+++.+..
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34444444443322 22333444444444444444444444444433
No 100
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=0.00012 Score=76.24 Aligned_cols=234 Identities=15% Similarity=0.137 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008105 258 ITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSL 337 (577)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 337 (577)
..|..+..+-.+.|.+.+|.+-|-+.. |+..|..++....+.|.+++-.+++....+...+|... +.|+-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 445555555555555555554443321 44555555555555555555555555444443333332 3445555
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 008105 338 GSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEAL 417 (577)
Q Consensus 338 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 417 (577)
++.+++.+.++++. -||......+.+-|...+.++.|.-+|.. +..|..+...+...|++..|.
T Consensus 1177 Akt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHH
Confidence 55555544443321 24555555555555555555555544442 233555555666666666665
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 008105 418 QLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRG 497 (577)
Q Consensus 418 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 497 (577)
+--+.. .+..||..+-.+|...+.+.-| +|-..++.....-...++.-|-..|-+++...+++......
T Consensus 1241 D~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1241 DAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred HHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh
Confidence 443322 1455666666666655544322 22222233344556667777777777777777776554311
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008105 498 NKMRNSAYRLVIHGLCKSKKVDMAIQVLELM 528 (577)
Q Consensus 498 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 528 (577)
+..-..|+-+.-.|++- ++++..+.++-.
T Consensus 1310 -RAHMgmfTELaiLYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1310 -RAHMGMFTELAILYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred -HHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 11233455555555543 344444444433
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=0.00014 Score=75.58 Aligned_cols=322 Identities=15% Similarity=0.166 Sum_probs=218.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 008105 151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSG--GVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTI 228 (577)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 228 (577)
|+..-+..+.++...+-..+.+++++++.-.+ +..+...-|.||-...+. +..+..+..+++...+ .|+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------H
Confidence 44444455555656666666666666655321 111222233333333332 2334444444444322 122 2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 008105 229 LRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKY 308 (577)
Q Consensus 229 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 308 (577)
......++-+++|..+|++. ..+....+.|+. .-+.+++|.+.-++.. .+..|..+..+-.+.|.+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 33445566788888888774 345666666665 3466777777666553 457899999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008105 309 DDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQM 388 (577)
Q Consensus 309 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 388 (577)
.+|.+-|-+. -|+..|..+++...+.|.+++..+.+....+....|.. =+.|+-+|++.++..+-.+++.
T Consensus 1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-- 1190 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-- 1190 (1666)
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc--
Confidence 9998766443 27788999999999999999999999888777655544 4678999999999887766552
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 008105 389 VSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDI 468 (577)
Q Consensus 389 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 468 (577)
-|+......+.+-|...+.++.|.-++.. +..|..|...+...|++..|.+.-++. .+..
T Consensus 1191 -----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~k 1250 (1666)
T KOG0985|consen 1191 -----GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTK 1250 (1666)
T ss_pred -----CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchh
Confidence 57888888888999999999999887764 455778888889999998887665443 3677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008105 469 THRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMI 529 (577)
Q Consensus 469 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 529 (577)
||-.+-.+|...+.+.-| +|-..++.....-...++.-|-..|-+++-+.+++..+
T Consensus 1251 tWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 899998888877665543 34344444455567778888888888888888877654
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.78 E-value=4.9e-05 Score=69.58 Aligned_cols=302 Identities=13% Similarity=0.111 Sum_probs=207.7
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITY-NMMV 194 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li 194 (577)
++.-.-.+...+...|++.+|+.-|...++.++. +-.++..-...|...|+...|+.=++..++. +||-..- ..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 4444566788899999999999999998875321 2333333456788889999999988888875 6664322 2234
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCH----HH------------HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 008105 195 GGLCKRGQIRSAIALLDEMSVSGCEPDV----IT------------YNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLI 258 (577)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~------------~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 258 (577)
..+.+.|.+++|..-|+.+.+.. |+. .. ....+..+...|+...|++....+++. .+-|..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~ 190 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDAS 190 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhH
Confidence 56789999999999999998763 321 11 122334556688999999999998876 467888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH-----
Q 008105 259 TYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTL----- 333 (577)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----- 333 (577)
.+..-..+|...|++..|+.-++...+.. ..+..++.-+-..+...|+.+.++...++.++. .||...+-..
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLK 267 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHH
Confidence 88888899999999999988777776653 335566666777888899999999999998876 5554322111
Q ss_pred --H------HHHHccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008105 334 --L------HSLGSRGCWDAVDKILDIMNEASHSPTVFT---YNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNT 402 (577)
Q Consensus 334 --l------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 402 (577)
. ......++|.++.+-.+...+......... +..+-.++...+++.+|+..-.+.++.. +.|+.++.-
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~d 346 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHH
Confidence 1 112334556666666665555443212222 3334455666777888888887777653 344777777
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCC
Q 008105 403 VLGALCKEGMLNEALQLLHLLNGSS 427 (577)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~~~~~~ 427 (577)
-..+|.-...++.|+.-|+...+.+
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 7778887778888888887777654
No 103
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.75 E-value=7e-05 Score=75.15 Aligned_cols=290 Identities=16% Similarity=0.163 Sum_probs=167.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------------
Q 008105 122 KILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSG------------------- 182 (577)
Q Consensus 122 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g------------------- 182 (577)
+-|+.|.+.|.+..|.+....=.. ...|......+..++.+..-+++|-.+|+++..-.
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaiela 697 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELA 697 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHH
Confidence 568999999999988876532221 23466667777777777666777777777664210
Q ss_pred ---CCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 008105 183 ---GVPDTITY-NMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLI 258 (577)
Q Consensus 183 ---~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 258 (577)
++..+++. ......+...|+++.|...|-+.. .....+.+....+.+.+|+.+++.+.... .-..
T Consensus 698 rfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~ 766 (1636)
T KOG3616|consen 698 RFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASG 766 (1636)
T ss_pred HhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccc
Confidence 00000000 001111112222222222221111 11122334455667777777777766542 2334
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105 259 TYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLG 338 (577)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 338 (577)
.|..+.+.|+..|+++.|.++|-+.- .++-.|.+|.+.|++++|.++-.+.. |.+.....|.+-..-+-
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedld 835 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLD 835 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHH
Confidence 56667777888888888888876542 35667778888888888877766554 33444556666666667
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 008105 339 SRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQ 418 (577)
Q Consensus 339 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 418 (577)
+.|++.+|++++-.+.. |+ ..|.+|-+.|..+..+++..+-.... -..|...+..-+-..|++..|..
T Consensus 836 ehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~ 903 (1636)
T KOG3616|consen 836 EHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEE 903 (1636)
T ss_pred hhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHH
Confidence 77788777777654432 33 24667777787777777766543211 12344445556667777777776
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008105 419 LLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYG 456 (577)
Q Consensus 419 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 456 (577)
.|-+.. -|.+-+++|-..+-|++|.++-+
T Consensus 904 ~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 904 HFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 664432 24555666666666666655543
No 104
>PLN02789 farnesyltranstransferase
Probab=98.71 E-value=2.5e-05 Score=74.49 Aligned_cols=216 Identities=10% Similarity=0.054 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRID-RIEKASKVLQIMVMSGGVPDTITYNMMVGG 196 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 196 (577)
.++..+-..+...++.++|+.+.+.+++.++. +..+|+.....+...| ++++++..++++.+.+ +.+..+|+.....
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 35566667777788999999999999987533 5667777777777777 5789999999998876 4456677766656
Q ss_pred HHhcCCh--HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---C
Q 008105 197 LCKRGQI--RSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQ---C 271 (577)
Q Consensus 197 ~~~~g~~--~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g 271 (577)
+.+.|+. +++...++++.+.. +.|..+|+...-++...|+++++++.++++++.+ +.|..+|+.....+.+. |
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccc
Confidence 6666653 67788888888765 5678888888888888889999999999998875 44666776665555444 2
Q ss_pred CH----HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc----CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc
Q 008105 272 GI----ARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQ----GKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGS 339 (577)
Q Consensus 272 ~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 339 (577)
.. +++.+...+++... +-+...|+.+...+... +...+|.+.+.+..+.+ ..+......|++.|+.
T Consensus 194 ~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 22 45666665666553 34667777777777663 33455777776665543 2245566667777664
No 105
>PLN02789 farnesyltranstransferase
Probab=98.69 E-value=3.8e-05 Score=73.30 Aligned_cols=220 Identities=9% Similarity=-0.002 Sum_probs=102.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh--hHH
Q 008105 340 RGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYG-LVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGML--NEA 416 (577)
Q Consensus 340 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~A 416 (577)
.+..++|..+.+++++.. +.+..+|+.....+.+.| ++++++..++++.+.+ +.+..+|+.....+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 344455555555554432 123334444444444444 3455555555555443 33333444333333333332 344
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC----HHHHHHH
Q 008105 417 LQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRA---DQ----VEEAVDL 489 (577)
Q Consensus 417 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~----~~~A~~~ 489 (577)
..+++.+.+.. +.+..+|+...-.+.+.|+++++++.++++++.+. -|...|+.....+.+. |. .++..++
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 55555555443 34455555555555555555666666666555432 2334444444333332 11 1344555
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------------
Q 008105 490 LKEIGKRGNKMRNSAYRLVIHGLCKS----KKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDG-------------- 551 (577)
Q Consensus 490 ~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-------------- 551 (577)
..++..... -|...|+.+...+... ++..+|.+.+.+..+.+ ..+......|++.|+...
T Consensus 206 ~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~ 283 (320)
T PLN02789 206 TIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLA 283 (320)
T ss_pred HHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccc
Confidence 545444332 2445555555555442 23344656655554322 223445555566555421
Q ss_pred ----CHHHHHHHHHHHHH
Q 008105 552 ----MTEEAYKLWQKLIE 565 (577)
Q Consensus 552 ----~~~~A~~~~~~~~~ 565 (577)
..++|.++++.+.+
T Consensus 284 ~~~~~~~~a~~~~~~l~~ 301 (320)
T PLN02789 284 EELSDSTLAQAVCSELEV 301 (320)
T ss_pred cccccHHHHHHHHHHHHh
Confidence 23567777777743
No 106
>PF12854 PPR_1: PPR repeat
Probab=98.66 E-value=3.2e-08 Score=59.08 Aligned_cols=32 Identities=31% Similarity=0.548 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 008105 112 FVENDEKTNNKILQNFCSRGKLTDASKLIDIM 143 (577)
Q Consensus 112 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~ 143 (577)
|+.||.++||.||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777776
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.66 E-value=2.6e-05 Score=83.64 Aligned_cols=227 Identities=11% Similarity=0.022 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105 293 VTYNSLVNFSCKQGKYDDAVLVINNLLSR-GMEP---NSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNIL 368 (577)
Q Consensus 293 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 368 (577)
..|-..|....+.++.++|+++.++.+.. ++.- -...|.++++.-..-|.-+...++|++..+.. ....+|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHH
Confidence 44555555555555555555555554432 1100 11234444444444455555555555555431 223345555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCC
Q 008105 369 INGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCS-PCLITYNTLIDGLAKKGC 447 (577)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~ 447 (577)
...|.+.+..++|.++++.|.+. +......|...+..+.+.++-++|..++.+..+.-.. .......-.+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 55555555555555555555554 1234455555555555555555555555554443110 122233333444445556
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc--HHHHHHHHHHHHhcCChHHHHH
Q 008105 448 MEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMR--NSAYRLVIHGLCKSKKVDMAIQ 523 (577)
Q Consensus 448 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~ 523 (577)
.+.+..+|+..... .+--...|+..++.-.++|+.+.++.+|++....++.|. -..|...+..--..|+-+.++.
T Consensus 1616 aeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred chhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 56666666555543 122344555666655566666666666666555544443 2344444444444454444333
No 108
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=0.0001 Score=75.02 Aligned_cols=351 Identities=13% Similarity=0.103 Sum_probs=199.3
Q ss_pred ChhhHHHHH--HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CC--------C
Q 008105 151 DFHFCINLI--RGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVS-GC--------E 219 (577)
Q Consensus 151 ~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~--------~ 219 (577)
|..|-..++ +.|...|+.+.|.+-.+.+. +...|..+..++.+..+++-|.-.+-.|... |. .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 445555554 33556788888887777664 4467888888888888877776666555421 10 1
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 008105 220 PDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLV 299 (577)
Q Consensus 220 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 299 (577)
++ .+=....-.....|.+++|..+|++..+. ..|=..|-..|.|++|.++-+.-.+.. =..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHH
Confidence 11 11112222334567888888888776542 233355667788888887765432221 124555566
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 008105 300 NFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVD 379 (577)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 379 (577)
..+-..++.+.|++.|++.-.. --..+..| ..++...+.+.+.+ .|...|.-....+-..|+.+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~h----afev~rmL------~e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~Gemd 929 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVH----AFEVFRML------KEYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMD 929 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCCh----HHHHHHHH------HhChHHHHHHHHhc------cchHHHHHHHHHHhcccchH
Confidence 6666677788887777654311 11111111 12233333333333 24455666666666789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105 380 RAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMM 459 (577)
Q Consensus 380 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 459 (577)
.|+.+|..... |-+++...|-.|+.++|-++-++- | |......|.+.|-..|++.+|..+|.+..
T Consensus 930 aAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 930 AALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99998887653 556677777888888888776542 2 55666678888888999999988888765
Q ss_pred HCC--C------CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHH---
Q 008105 460 ENG--I------SPDDITHRTLIWGFCRA--DQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLE--- 526 (577)
Q Consensus 460 ~~g--~------~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--- 526 (577)
... + ..+...+ ..+..+ .+.-.|.++|++.-. . +...+..|-+.|.+.+|+++-=
T Consensus 995 afsnAIRlcKEnd~~d~L~----nlal~s~~~d~v~aArYyEe~g~---~-----~~~AVmLYHkAGm~~kALelAF~tq 1062 (1416)
T KOG3617|consen 995 AFSNAIRLCKENDMKDRLA----NLALMSGGSDLVSAARYYEELGG---Y-----AHKAVMLYHKAGMIGKALELAFRTQ 1062 (1416)
T ss_pred HHHHHHHHHHhcCHHHHHH----HHHhhcCchhHHHHHHHHHHcch---h-----hhHHHHHHHhhcchHHHHHHHHhhc
Confidence 310 0 0011111 111111 223334444443321 1 1123344666777776665421
Q ss_pred -----HHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105 527 -----LMISSR--YKPDDTVFSTIVKKVADDGMTEEAYKLWQKL 563 (577)
Q Consensus 527 -----~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 563 (577)
+++... -..|+...+.-.+-+....++++|..++-..
T Consensus 1063 Qf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1063 QFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 111122 2345666666666677777777776665443
No 109
>PF12854 PPR_1: PPR repeat
Probab=98.64 E-value=4.3e-08 Score=58.52 Aligned_cols=32 Identities=47% Similarity=0.951 Sum_probs=17.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008105 182 GGVPDTITYNMMVGGLCKRGQIRSAIALLDEM 213 (577)
Q Consensus 182 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 213 (577)
|+.||..+||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=3e-06 Score=84.90 Aligned_cols=216 Identities=16% Similarity=0.103 Sum_probs=151.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008105 330 YNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCK 409 (577)
Q Consensus 330 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 409 (577)
-..+...+.+.|-...|..+++++. .|...+.+|...|+..+|..+..+..++ +|++..|..+.+....
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 3445666777788888888887664 3566777888888888888887777764 7788888888877777
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008105 410 EGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDL 489 (577)
Q Consensus 410 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 489 (577)
..-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+.+ +.-..+|-.+..+..+.++++.|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 66777887777655332 11111112233677888888887766542 23456777777777788888888888
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105 490 LKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEW 566 (577)
Q Consensus 490 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (577)
|....... +-+...|+.+-.+|.+.|+-.+|...+++..+.+ .-+..+|...+-...+.|.+++|.+.+.++.+.
T Consensus 542 F~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 542 FHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 87777643 2245678888888888888888888888888766 445566666666777888888888888877653
No 111
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=8.5e-06 Score=79.68 Aligned_cols=87 Identities=13% Similarity=0.169 Sum_probs=49.0
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 008105 232 MFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDA 311 (577)
Q Consensus 232 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 311 (577)
+.+.|++.+|.-.|+..++.. |-+...|..|.......++-..|+..+++..+.. +-+....-.|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 345566666666666655543 4455566666666666666666666666665543 22344555555556666666666
Q ss_pred HHHHHHHhh
Q 008105 312 VLVINNLLS 320 (577)
Q Consensus 312 ~~~~~~m~~ 320 (577)
+..++..+.
T Consensus 373 l~~L~~Wi~ 381 (579)
T KOG1125|consen 373 LKMLDKWIR 381 (579)
T ss_pred HHHHHHHHH
Confidence 666655543
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=1.3e-05 Score=80.55 Aligned_cols=222 Identities=11% Similarity=0.070 Sum_probs=174.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 008105 253 CPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNT 332 (577)
Q Consensus 253 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 332 (577)
.+|-...-..+...+.+.|-+..|..+|++.. .|...|..|+..|+..+|..+..+-.++ +||...|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 34444555667778888999999999998774 5777888999999999999998888874 788889988
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008105 333 LLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGM 412 (577)
Q Consensus 333 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 412 (577)
+.+......-+++|.++.+..... .-..+.......+++.++.+.|+.-.+.+ +....+|-.+.-+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 888887777788888888766443 11112222233688999999998887765 5567788888888889999
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008105 413 LNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKE 492 (577)
Q Consensus 413 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 492 (577)
++.|.+.|....... +-+...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+....+-|.+++|.+.+.+
T Consensus 535 ~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 999999998877653 4566789999999999999999999999999876 44566677777778889999999999988
Q ss_pred Hhh
Q 008105 493 IGK 495 (577)
Q Consensus 493 m~~ 495 (577)
+..
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 765
No 113
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=9.3e-06 Score=79.41 Aligned_cols=219 Identities=15% Similarity=0.103 Sum_probs=150.0
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008105 195 GGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIA 274 (577)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 274 (577)
.-+.+.|++.+|.-.|+...+.. +-+...|..|....+.+++-..|+..+++.++.. |-|.....+|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34668999999999999988775 5678999999999999999999999999999874 667888899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHH-----------HHHHhcCCHHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHccCC
Q 008105 275 RAIEVLDDMAIEGCSPDIVTYNSLV-----------NFSCKQGKYDDAVLVINNLL-SRGMEPNSITYNTLLHSLGSRGC 342 (577)
Q Consensus 275 ~A~~~~~~~~~~~~~~~~~~~~~li-----------~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~ 342 (577)
+|++.++.-+....+ |..+. ..+.....+.+..++|-++. ..+..+|......|.-.|.-.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999999998764211 00000 01111112233344444433 33333555555666666666777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 008105 343 WDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPD-IVTYNTVLGALCKEGMLNEALQLLH 421 (577)
Q Consensus 343 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 421 (577)
+++|...|+...... |-|...||.|...++...+.++|+..|++.++. .|+ +.+...|.-+|...|.+++|.+.|-
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 777777777776653 346667777777777777777777777777765 333 3344445556777777777776664
Q ss_pred HH
Q 008105 422 LL 423 (577)
Q Consensus 422 ~~ 423 (577)
..
T Consensus 523 ~A 524 (579)
T KOG1125|consen 523 EA 524 (579)
T ss_pred HH
Confidence 33
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.61 E-value=3.5e-05 Score=82.64 Aligned_cols=228 Identities=14% Similarity=0.079 Sum_probs=179.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 008105 326 NSITYNTLLHSLGSRGCWDAVDKILDIMNEA-SHSP---TVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYN 401 (577)
Q Consensus 326 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 401 (577)
+...|-..|......++.+.|+++.++.... ++.- -.-.|.++++.-..-|.-+...++|+++.+. -.....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4557888888888999999999999988754 1111 2246788888777788888899999999876 23456788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 008105 402 TVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPD---DITHRTLIWGFC 478 (577)
Q Consensus 402 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~ 478 (577)
.|...|.+.+..++|.++++.|.++- ......|...+..+.++.+-++|..++.+..+. -|. .....-.+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 89999999999999999999998864 467789999999999999999999999999874 243 334455566667
Q ss_pred hcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 008105 479 RADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDD--TVFSTIVKKVADDGMTEEA 556 (577)
Q Consensus 479 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A 556 (577)
+.|+.+++..+|+.......+ ....|+.+|+.-.++|+.+.++.+|++....++.|-. ..|...+..=-..|+-+.+
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 899999999999998876433 5678999999999999999999999999998887753 4566666655666765544
Q ss_pred HHH
Q 008105 557 YKL 559 (577)
Q Consensus 557 ~~~ 559 (577)
+.+
T Consensus 1691 E~V 1693 (1710)
T KOG1070|consen 1691 EYV 1693 (1710)
T ss_pred HHH
Confidence 433
No 115
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.60 E-value=0.00027 Score=73.71 Aligned_cols=418 Identities=9% Similarity=-0.032 Sum_probs=229.9
Q ss_pred ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008105 132 KLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLD 211 (577)
Q Consensus 132 ~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 211 (577)
+...|+..|-+..+..+. =...|..|...|+...+...|.+.|+...+.. ..|...+....+.|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 377788888777776432 35578888888888888999999999998765 4577888889999999999999998844
Q ss_pred HHhhCC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008105 212 EMSVSG-CEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSP 290 (577)
Q Consensus 212 ~~~~~g-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 290 (577)
...+.. ...-...|....-.|.+.++...|+.-|+..++.. |.|...|..+..+|.+.|++..|.++|.++... .|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 433321 01112233344455677889999999998888763 667889999999999999999999999888765 33
Q ss_pred CH-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCC------CCCCHHHHHHHHHHHHccCCHHHHHHHHH-------HHHhC
Q 008105 291 DI-VTYNSLVNFSCKQGKYDDAVLVINNLLSRG------MEPNSITYNTLLHSLGSRGCWDAVDKILD-------IMNEA 356 (577)
Q Consensus 291 ~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~-------~~~~~ 356 (577)
+. ..---....-+..|++.+|+..+....... ..--..++..+...+...|-...+..+++ -....
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 32 222223344677889999988887765431 00011122222222222222222222222 22222
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHH------HHHHHH-HHHHHCCC--------------------CCCHHHHHHHHHHHHh
Q 008105 357 SHSPTVFTYNILINGLCKYGLVD------RAINSF-NQMVSKNC--------------------QPDIVTYNTVLGALCK 409 (577)
Q Consensus 357 ~~~~~~~~~~~li~~~~~~g~~~------~A~~~~-~~m~~~~~--------------------~~~~~~~~~li~~~~~ 409 (577)
....+...|-.+.++|.-.-..+ .-..++ .+....+. ..++.+|..+...|.+
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence 21223333332222221100000 000000 01111111 1122333333333222
Q ss_pred ----cC----ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008105 410 ----EG----MLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRAD 481 (577)
Q Consensus 410 ----~g----~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 481 (577)
.+ +...|..-+....+.. ..+..+|+.|.-. ...|++.-|...|-+-+... +....+|..+.-.+....
T Consensus 788 ~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 788 YFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecc
Confidence 11 1223444444443332 3345556555443 44455555555554443321 234556666666666777
Q ss_pred CHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008105 482 QVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMI----SSRYKPDDTVFSTIVKKVADDGMTEEAY 557 (577)
Q Consensus 482 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 557 (577)
+++-|...|.......+ .|...|..........|+.-++..+|..-. ..|-.|+..-|-+........|+.++-+
T Consensus 865 d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred cHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence 77778877777766532 255556555555556677777777766521 1244455555544444455555555443
Q ss_pred H
Q 008105 558 K 558 (577)
Q Consensus 558 ~ 558 (577)
.
T Consensus 944 ~ 944 (1238)
T KOG1127|consen 944 N 944 (1238)
T ss_pred H
Confidence 3
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.59 E-value=1e-05 Score=74.67 Aligned_cols=188 Identities=13% Similarity=0.046 Sum_probs=130.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HH
Q 008105 114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQI-P-DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDT--IT 189 (577)
Q Consensus 114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~ 189 (577)
+.....+..+...+.+.|++++|...|+++....+. | ...++..+..++.+.|++++|...++++.+..+.... ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 456778889999999999999999999999886432 1 1246777889999999999999999999886532121 24
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 008105 190 YNMMVGGLCKR--------GQIRSAIALLDEMSVSGCEPD-VITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITY 260 (577)
Q Consensus 190 ~~~li~~~~~~--------g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 260 (577)
+..+...+... |++++|.+.|+++... .|+ ...+..+..... .... . ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~------~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR------L--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH------H--------HHHH
Confidence 55555555554 7788999999988865 343 223322221110 0000 0 0111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105 261 TILIEQVCKQCGIARAIEVLDDMAIEGC--SPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSR 321 (577)
Q Consensus 261 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 321 (577)
..+...+.+.|++++|...++....... +.....+..+..++.+.|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455678889999999999998887631 123467888889999999999999988887765
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.54 E-value=1.9e-05 Score=72.89 Aligned_cols=187 Identities=12% Similarity=-0.024 Sum_probs=127.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH--HH
Q 008105 360 PTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDI---VTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCL--IT 434 (577)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~ 434 (577)
.....+..+...+.+.|++++|...|+++.... +.++ .++..+..++.+.|++++|...++.+.+....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 456677778888889999999999999988763 2222 46677788888999999999999988776421111 24
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHH
Q 008105 435 YNTLIDGLAKK--------GCMEKAMVLYGQMMENGISPDDI-THRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAY 505 (577)
Q Consensus 435 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 505 (577)
+..+..++... |++++|.+.|+++.+.. |+.. .+..+..... .... . ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~------~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNR------L--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHH------H--------HHHH
Confidence 55555555554 67888888888887752 4432 2222211100 0000 0 0111
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008105 506 RLVIHGLCKSKKVDMAIQVLELMISSR--YKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWK 567 (577)
Q Consensus 506 ~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (577)
..+...+.+.|++++|...+++.++.. -+.....+..+..++...|++++|..+++.+....
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 245667889999999999999998642 12235788899999999999999999998887654
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.53 E-value=4.2e-05 Score=67.77 Aligned_cols=158 Identities=15% Similarity=0.067 Sum_probs=84.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008105 366 NILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKK 445 (577)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 445 (577)
..+-..+...|+-+....+........ +.|.......+....+.|++..|...+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 344444555555555555554433321 3344444445555566666666666666655544 55566666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHH
Q 008105 446 GCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVL 525 (577)
Q Consensus 446 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 525 (577)
|+++.|..-|.+..+.. .-+....+.+.-.+.-.|+.+.|..++......+.. |...-..+.......|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666666655531 123444555555555566666666666655544322 3344444555555666666665555
Q ss_pred HH
Q 008105 526 EL 527 (577)
Q Consensus 526 ~~ 527 (577)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 43
No 119
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.50 E-value=0.0024 Score=66.28 Aligned_cols=225 Identities=14% Similarity=0.176 Sum_probs=154.1
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008105 126 NFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRG--LIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI 203 (577)
Q Consensus 126 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 203 (577)
-....+++..|.+..+...+.. ||.. |..++.+ +.+.|+.++|..+++.....+.. |..|...+-..|-+.|+.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 3456788999999999988863 4444 4444444 45889999999888888766644 888999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----------CH
Q 008105 204 RSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQC----------GI 273 (577)
Q Consensus 204 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~ 273 (577)
++|..+|++..+. .|+......+..+|.+.+++.+-.+.--++.+ ..+-+...+=++++.....- -.
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 9999999999876 57788888888999998887764444333333 24555555555555544321 13
Q ss_pred HHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHH-HHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 008105 274 ARAIEVLDDMAIEG-CSPDIVTYNSLVNFSCKQGKYDDAVLVIN-NLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILD 351 (577)
Q Consensus 274 ~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 351 (577)
.-|.+.++.+.+.+ ---+..-...-...+-..|++++|++++. ...+.-...+...-+.-+..+...+++.+..++-.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 44666667766653 11112222223344567788999999884 34433333344455566777888899999999888
Q ss_pred HHHhCC
Q 008105 352 IMNEAS 357 (577)
Q Consensus 352 ~~~~~~ 357 (577)
++.+.+
T Consensus 251 ~Ll~k~ 256 (932)
T KOG2053|consen 251 RLLEKG 256 (932)
T ss_pred HHHHhC
Confidence 888876
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.50 E-value=2.1e-05 Score=69.75 Aligned_cols=119 Identities=13% Similarity=0.112 Sum_probs=73.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-HhCCC--hHHH
Q 008105 165 IDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTM-FDNGK--FKQA 241 (577)
Q Consensus 165 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~-~~~~~--~~~A 241 (577)
.++.+++...++..++.+ +.|...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666666554 4566666666666777777777777776666554 34555666665543 45555 3666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008105 242 IGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIE 286 (577)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 286 (577)
.+++++.++.. +.+..++..+...+.+.|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666553 345556666666666666666666666666654
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.46 E-value=5.4e-05 Score=67.17 Aligned_cols=156 Identities=10% Similarity=0.066 Sum_probs=108.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 008105 369 INGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCM 448 (577)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 448 (577)
+..|...|+++......+.+.. |. ..+...++.+++...++...+.. +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4567788888776444432221 11 01223566677777777777665 67788888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHH
Q 008105 449 EKAMVLYGQMMENGISPDDITHRTLIWGF-CRADQ--VEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVL 525 (577)
Q Consensus 449 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 525 (577)
++|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.+.. +...+..+...+...|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888753 23566777777763 56666 48888888888876533 6677777888888888888888888
Q ss_pred HHHHHCCCCCCHHHH
Q 008105 526 ELMISSRYKPDDTVF 540 (577)
Q Consensus 526 ~~m~~~~~~p~~~~~ 540 (577)
+++.+.. +|+..-+
T Consensus 168 ~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 168 QKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHhhC-CCCccHH
Confidence 8888642 4444333
No 122
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.45 E-value=0.0021 Score=62.94 Aligned_cols=394 Identities=12% Similarity=0.102 Sum_probs=204.8
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 008105 149 IPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTI 228 (577)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 228 (577)
+-|..+|+.||+-+-.+ .++++++.++++...- +-....|..-|..-.+..+++...++|.+.... ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 44888888888866555 8888888888887642 445667888888888888888888888887654 3566677666
Q ss_pred HHHHHh-CCChHH----HHHHHHHHHH-CCCCCC-HHHHHHHHH---------HHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 008105 229 LRTMFD-NGKFKQ----AIGFWKDQLR-KGCPPY-LITYTILIE---------QVCKQCGIARAIEVLDDMAIEGCSPDI 292 (577)
Q Consensus 229 i~~~~~-~~~~~~----A~~~~~~~~~-~~~~~~-~~~~~~l~~---------~~~~~g~~~~A~~~~~~~~~~~~~~~~ 292 (577)
+.--.+ .++... ..+.|+-.+. .|..+- ...|+..+. .+..+.+++...++++++...-+..=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 654333 222222 2233333322 232221 122333332 122333445555555555532111001
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh--CCCCCCH--------
Q 008105 293 VTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNE--ASHSPTV-------- 362 (577)
Q Consensus 293 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~-------- 362 (577)
..|+-.. ...+ ..|..|-.-++ --+...+..|.++++++.. .|...+.
T Consensus 173 kLW~DY~-----------------~fE~---~IN~~tarK~i--~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T 230 (656)
T KOG1914|consen 173 KLWKDYE-----------------AFEQ---EINIITARKFI--GERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGT 230 (656)
T ss_pred HHHHHHH-----------------HHHH---HHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Confidence 1222110 0000 00111111111 0112233344444443321 1111100
Q ss_pred -------HHHHHHHHHHHHcCCH---------HHHHHHHHHHH-HCCCCCCHHHHH-----HHHHHHHhcCC-------h
Q 008105 363 -------FTYNILINGLCKYGLV---------DRAINSFNQMV-SKNCQPDIVTYN-----TVLGALCKEGM-------L 413 (577)
Q Consensus 363 -------~~~~~li~~~~~~g~~---------~~A~~~~~~m~-~~~~~~~~~~~~-----~li~~~~~~g~-------~ 413 (577)
..|-.+|.- -+.+-+ .+..-.+++.+ -.+..|++.-.. ..-+.+...|+ .
T Consensus 231 ~~e~~qv~~W~n~I~w-EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t 309 (656)
T KOG1914|consen 231 KDEIQQVELWKNWIKW-EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLT 309 (656)
T ss_pred hHHHHHHHHHHHHHHH-HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhH
Confidence 012222211 111100 01111122211 112222221100 01112233333 3
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008105 414 NEALQLLHLLNGSSCSPCLITYNTLIDGLAKKG---CMEKAMVLYGQMMENG-ISPDDITHRTLIWGFCRADQVEEAVDL 489 (577)
Q Consensus 414 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~ 489 (577)
+++..+++.....-...+..+|..+.+---..- ..+.....++++...- +.|+ .+|..++..-.+..-++.|..+
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHH
Confidence 455556655544332334444544443221111 2566666777766432 3333 4677888888888889999999
Q ss_pred HHHHhhCCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105 490 LKEIGKRGNKM-RNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKV 568 (577)
Q Consensus 490 ~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (577)
|.+..+.+..+ ++..+++++.-+| .++.+-|.++|+--+++ +..++.-....++-+.+.|+-..|+.+|++.+..++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999977766 5666677776665 67899999999987653 344455556788899999999999999999998865
Q ss_pred CCCc
Q 008105 569 FEKG 572 (577)
Q Consensus 569 ~~~~ 572 (577)
.++.
T Consensus 467 ~~~k 470 (656)
T KOG1914|consen 467 SADK 470 (656)
T ss_pred Chhh
Confidence 5543
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=0.00019 Score=63.66 Aligned_cols=138 Identities=16% Similarity=0.081 Sum_probs=66.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----c
Q 008105 370 NGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAK----K 445 (577)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~ 445 (577)
..|+..|++++|++...... +......=+..+.+..+.+-|.+.++.|.+.. +..|.+-|..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 34555555555555554411 22222222333444455555555555555432 34444444444432 2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCh
Q 008105 446 GCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKV 518 (577)
Q Consensus 446 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 518 (577)
+.+..|.-+|++|-+. ..|+..+.+....++...|++++|..++++....... ++.+...++-+-...|..
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKD 257 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCC
Confidence 3455555566665542 3455555555555555566666666666655554322 344444444444444443
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.43 E-value=6.9e-05 Score=66.44 Aligned_cols=159 Identities=15% Similarity=0.101 Sum_probs=102.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC
Q 008105 156 INLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDN 235 (577)
Q Consensus 156 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 235 (577)
..+-..+...|+-+....+........ +.|....+.++....+.|++..|...|.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 445566666676666666666544332 3455555666777777777777777777776554 66777777777777777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 008105 236 GKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVI 315 (577)
Q Consensus 236 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 315 (577)
|++++|..-|.+..+. .+-+....+.+.-.+.-.|+.+.|..++......+ .-|...-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777777776654 23345556666666666777777777777666553 225555666666667777777776665
Q ss_pred HHH
Q 008105 316 NNL 318 (577)
Q Consensus 316 ~~m 318 (577)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 443
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.43 E-value=0.00015 Score=77.19 Aligned_cols=241 Identities=9% Similarity=0.050 Sum_probs=154.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008105 113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNM 192 (577)
Q Consensus 113 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 192 (577)
...+...|..|++.|...+++++|.++.+...+.. +-....|..+...+.+.++..++..+ .
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~--------------- 88 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N--------------- 88 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h---------------
Confidence 34567889999999999999999999999777753 22333344444456666766555544 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008105 193 MVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCG 272 (577)
Q Consensus 193 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 272 (577)
++.......++.-...+...|... .-+...+..+..+|-+.|+.++|..+|+++++.. +-|+.+.|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 233333333443333333444443 2345577888889999999999999999998876 66888888888888888 8
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 008105 273 IARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDI 352 (577)
Q Consensus 273 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 352 (577)
+++|.+++.+.... +...+++..+.++|.++... .|+.. +.-..+.+.
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~---------------d~f~~i~~k 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDF---------------DFFLRIERK 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--Ccccc---------------hHHHHHHHH
Confidence 99998888877654 66667788888888888766 22221 122222222
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008105 353 MNEA-SHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALC 408 (577)
Q Consensus 353 ~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 408 (577)
+... +...-+.++-.+-..|.+..+++++..+++.+++.. +.|..+..-++..|.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 2221 222334445555566666777777777777777664 335555555555554
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00024 Score=63.05 Aligned_cols=86 Identities=15% Similarity=0.101 Sum_probs=37.5
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008105 302 SCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLG----SRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGL 377 (577)
Q Consensus 302 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 377 (577)
+.+..+++-|.+.+++|.+.. +..|.+.|..++. ..+...+|.-+|++|.+. .+|+..+.+-...++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 344444445555555544331 2233333333332 123344444455544432 23444444444444444555
Q ss_pred HHHHHHHHHHHHHC
Q 008105 378 VDRAINSFNQMVSK 391 (577)
Q Consensus 378 ~~~A~~~~~~m~~~ 391 (577)
+++|..++++.+.+
T Consensus 223 ~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 223 YEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHHhc
Confidence 55555555554444
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.40 E-value=3.5e-05 Score=64.60 Aligned_cols=95 Identities=8% Similarity=-0.082 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008105 155 CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD 234 (577)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 234 (577)
+..+...+.+.|++++|...|+...... +.+...|..+..++.+.|++++|...|++..+.. +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344555566666666666666666554 3355566666666666666666666666666543 4455566666666666
Q ss_pred CCChHHHHHHHHHHHHC
Q 008105 235 NGKFKQAIGFWKDQLRK 251 (577)
Q Consensus 235 ~~~~~~A~~~~~~~~~~ 251 (577)
.|++++|+..|+..++.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666553
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.39 E-value=0.00021 Score=75.34 Aligned_cols=147 Identities=13% Similarity=0.092 Sum_probs=98.5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 008105 219 EPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSL 298 (577)
Q Consensus 219 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 298 (577)
..++..+..|.....+.|.+++|..+++...+.. |-+......+...+.+.+++++|+..+++..... +-+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 4557777777777777788888888877777652 4455666667777777777777777777777663 2244556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105 299 VNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILI 369 (577)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 369 (577)
..++.+.|++++|..+|+++...+ .-+..++..+...+-..|+.++|...|+...+.. .+....|+..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 677777777777777777777642 2235667777777777777777777777776542 23334444433
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.38 E-value=0.00024 Score=74.88 Aligned_cols=136 Identities=10% Similarity=0.008 Sum_probs=96.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 008105 358 HSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNT 437 (577)
Q Consensus 358 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 437 (577)
.+.+...+-.|.....+.|.+++|..+++...+.. +-+......+...+.+.+++++|+...++..... +.+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 34456777777777777788888888877777763 3345556667777777778888877777777764 445566667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105 438 LIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKR 496 (577)
Q Consensus 438 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 496 (577)
+..++.+.|++++|.++|++....+ +-+..++..+...+...|+.++|...|++..+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777788888888888777632 233667777777777778888887777777653
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.37 E-value=0.00024 Score=75.68 Aligned_cols=150 Identities=13% Similarity=0.054 Sum_probs=76.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008105 329 TYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALC 408 (577)
Q Consensus 329 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 408 (577)
.+..+..+|-+.|+.+++..+++++.+.. +.|+.+.|.+...|+.. ++++|++++.+.... +.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 55555556666666666666666665554 34555556665555555 666666555554432 44
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008105 409 KEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMEN-GISPDDITHRTLIWGFCRADQVEEAV 487 (577)
Q Consensus 409 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~ 487 (577)
..+++.++..+|..+.... +.+...+.. +.+.+... |..--..++..+-..|....+++++.
T Consensus 181 ~~kq~~~~~e~W~k~~~~~-~~d~d~f~~----------------i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYN-SDDFDFFLR----------------IERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred hhhcchHHHHHHHHHHhcC-cccchHHHH----------------HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 4445555555555555442 111112111 11222111 11122334444555566666777777
Q ss_pred HHHHHHhhCCCCccHHHHHHHHHHHH
Q 008105 488 DLLKEIGKRGNKMRNSAYRLVIHGLC 513 (577)
Q Consensus 488 ~~~~~m~~~~~~~~~~~~~~li~~~~ 513 (577)
.+++.+.+.... |.....-++.+|.
T Consensus 244 ~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 244 YILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 777777765433 4445555555554
No 131
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.32 E-value=3.5e-05 Score=64.58 Aligned_cols=108 Identities=11% Similarity=-0.062 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG 195 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 195 (577)
|+..+..+...+.+.|++++|...|+...... +.+...|..+...+.+.|++++|...|+...+.. +.+...+..+..
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~ 100 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGV 100 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34446678899999999999999999999875 4488899999999999999999999999999876 568889999999
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 008105 196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYN 226 (577)
Q Consensus 196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 226 (577)
++.+.|++++|.+.|+...+.. +.+...|.
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~ 130 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKMS-YADASWSE 130 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 9999999999999999998763 33344443
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=0.0005 Score=66.48 Aligned_cols=116 Identities=19% Similarity=0.177 Sum_probs=59.4
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 008105 199 KRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPY-LITYTILIEQVCKQCGIARAI 277 (577)
Q Consensus 199 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 277 (577)
..|++++|+..++.+...- +-|+.-+......+.+.++.++|.+.+++++.. .|+ ....-.+..++.+.|+..+|.
T Consensus 318 ~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 4455555555555554431 223444444445555555555555555555543 222 334444455555555555555
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105 278 EVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNL 318 (577)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 318 (577)
+++++..... +-|+..|..|..+|...|+..++..-..+.
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 5555555442 334555555555555555555555544444
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=0.00041 Score=67.05 Aligned_cols=139 Identities=16% Similarity=0.116 Sum_probs=80.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008105 371 GLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEK 450 (577)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 450 (577)
.+...|+.++|+..++.++... +.|+.-+....+.+.+.++..+|.+.++.+.... +-.....-.+..+|.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence 3444566666666666665542 4455555555566666666666666666666543 2224455555666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105 451 AMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 451 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 530 (577)
|..++++.... .+-|+..|..|..+|...|+..++..-..+ .+...|+++.|...+....+
T Consensus 393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 66666666544 244566666666666666665555443322 24445666666666666654
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.19 E-value=9e-05 Score=61.61 Aligned_cols=97 Identities=12% Similarity=0.056 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008105 153 HFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTM 232 (577)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 232 (577)
.....+...+.+.|++++|.+.|+.+...+ +.+...|..+...+.+.|++++|...+++..+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334445555555666666666666655543 3345555555566666666666666666555443 33455555555556
Q ss_pred HhCCChHHHHHHHHHHHHC
Q 008105 233 FDNGKFKQAIGFWKDQLRK 251 (577)
Q Consensus 233 ~~~~~~~~A~~~~~~~~~~ 251 (577)
...|++++|.+.|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666555543
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.16 E-value=0.00012 Score=60.83 Aligned_cols=97 Identities=12% Similarity=0.037 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008105 188 ITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQV 267 (577)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 267 (577)
.....+...+.+.|++++|.+.|+.+...+ +.+...|..+...+...|++++|...++.....+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 344455555666666666666666665543 3455556666666666666666666666655442 44455555555566
Q ss_pred HHcCCHHHHHHHHHHHHHc
Q 008105 268 CKQCGIARAIEVLDDMAIE 286 (577)
Q Consensus 268 ~~~g~~~~A~~~~~~~~~~ 286 (577)
...|++++|.+.|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666655554
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.07 E-value=0.00026 Score=59.54 Aligned_cols=126 Identities=16% Similarity=0.091 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc--HHHHHHH
Q 008105 434 TYNTLIDGLAKKGCMEKAMVLYGQMMENGISPD---DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMR--NSAYRLV 508 (577)
Q Consensus 434 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~l 508 (577)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......|+ ......+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3667777777777777642 122 12333455667777888888888888777543332 2234446
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105 509 IHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKL 563 (577)
Q Consensus 509 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 563 (577)
...+...|++++|+..++..... ...+..+....+.+.+.|++++|+..|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 67777788888888887664322 234455666777788888888888877654
No 137
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.05 E-value=0.011 Score=59.81 Aligned_cols=330 Identities=13% Similarity=0.122 Sum_probs=174.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCC--------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 008105 184 VPDTITYNMMVGGLCKRGQIRSAIALLDEMSVS-GCEP--------DVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCP 254 (577)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~--------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 254 (577)
.|.+..|..+.......-.++.|...|-+.... |++. +...-.+=+.+ --|++++|.++|-++-++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence 577788888887777777777777777665432 2210 00011111222 2478888888887765542
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 008105 255 PYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCS--PDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNT 332 (577)
Q Consensus 255 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 332 (577)
..+..+.+.|++-...++++.--. +.. .-...|+.+...++....+++|.+.+...... ..
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 234566677777777766643211 000 01256777777788777888887777654321 23
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008105 333 LLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGM 412 (577)
Q Consensus 333 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 412 (577)
.+.++.+..++++.+.+...+. .+....-.+.+++...|.-++|.+.|-+-. .| .+.+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHH
Confidence 4555556666666555554443 344455667777777777777776664322 11 133556666677
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHH----H
Q 008105 413 LNEALQLLHLLNGSSCSPCLITY--------------NTLIDGLAKKGCMEKAMVLYGQMME----NGISPDDIT----H 470 (577)
Q Consensus 413 ~~~A~~~~~~~~~~~~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~----~ 470 (577)
+.+|.++-+... -|.+.+. .--|..+.+.|+.-.|.+++.+|.+ .+.+|-..- .
T Consensus 894 W~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL 969 (1189)
T KOG2041|consen 894 WGEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVL 969 (1189)
T ss_pred HHHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHH
Confidence 777766654332 1222221 1123334455555555566666643 233332211 1
Q ss_pred HHH-HHHH----------HhcCCHHHHHHHHHHHhhC-------CCCccHHHHH--HHHHHHHhcCChHHHHHHHHHHHH
Q 008105 471 RTL-IWGF----------CRADQVEEAVDLLKEIGKR-------GNKMRNSAYR--LVIHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 471 ~~l-i~~~----------~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~ 530 (577)
.++ +.-+ -+.|..++|..+++...-. +.--..+.|. .|..--...|.++.|.+.--.+.+
T Consensus 970 ~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~D 1049 (1189)
T KOG2041|consen 970 GALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSD 1049 (1189)
T ss_pred HHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhcc
Confidence 111 1111 1346666676655543211 0011122333 333344567888888776555543
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCC
Q 008105 531 -SRYKPDDTVFSTIVKKVADDGM 552 (577)
Q Consensus 531 -~~~~p~~~~~~~l~~~~~~~g~ 552 (577)
..+-|-..+|+.|.-+-+....
T Consensus 1050 YEd~lpP~eiySllALaaca~ra 1072 (1189)
T KOG2041|consen 1050 YEDFLPPAEIYSLLALAACAVRA 1072 (1189)
T ss_pred HhhcCCHHHHHHHHHHHHhhhhh
Confidence 2556777777766554444333
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.0057 Score=54.20 Aligned_cols=186 Identities=15% Similarity=0.113 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHhhC---C-CCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008105 307 KYDDAVLVINNLLSR---G-MEPNSI-TYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRA 381 (577)
Q Consensus 307 ~~~~A~~~~~~m~~~---g-~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 381 (577)
+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++.+..+- +-+..+-..-.-.+-..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 345555555544421 2 333433 23334444556677777777777766553 22222222222234456777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008105 382 INSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMEN 461 (577)
Q Consensus 382 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 461 (577)
+++++.+++.+ +.|..++-.-+...-..|+--+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 77777777765 556666665555666666666676666665554 3567777777777777777777777777777653
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhC
Q 008105 462 GISPDDITHRTLIWGFCRAD---QVEEAVDLLKEIGKR 496 (577)
Q Consensus 462 g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 496 (577)
. +-++..+..+...+.-.| +.+-|.++|.+..+.
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 2 223444555555544333 455677777777664
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.04 E-value=0.00021 Score=69.64 Aligned_cols=126 Identities=17% Similarity=0.183 Sum_probs=94.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105 154 FCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMF 233 (577)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 233 (577)
.-..++..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.+++.+..+.. +.+...+..-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34445566666788888888888888764 44 34457777777888888888888877653 446777777777888
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008105 234 DNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAI 285 (577)
Q Consensus 234 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 285 (577)
+.++++.|+++.+++.+. .|-+-.+|..|...|.+.|+++.|+..+..+..
T Consensus 246 ~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 888888888888888775 244556888888888889999988888887764
No 140
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.03 E-value=0.013 Score=59.14 Aligned_cols=64 Identities=9% Similarity=0.062 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105 467 DITHRTLIWGFCRADQVEEAVDLLKEIGK-RGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 467 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 530 (577)
...|..|.+--...|.++.|+..--.+.+ .++-|....|..+.-+-+....+....+.|-++..
T Consensus 1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 34455555556667888888776655554 45667788888777666666666666665555543
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.01 E-value=0.00034 Score=58.85 Aligned_cols=86 Identities=13% Similarity=0.169 Sum_probs=36.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008105 195 GGLCKRGQIRSAIALLDEMSVSGCEPD--VITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCG 272 (577)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 272 (577)
..+...|++++|...|+.+......++ ......+...+...|++++|+..++.... .......+....+.+.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD--EAFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC--cchHHHHHHHHHHHHHHCCC
Confidence 444444555555555555444321111 11222334444445555555555443211 12223334444445555555
Q ss_pred HHHHHHHHHH
Q 008105 273 IARAIEVLDD 282 (577)
Q Consensus 273 ~~~A~~~~~~ 282 (577)
+++|...|+.
T Consensus 134 ~~~A~~~y~~ 143 (145)
T PF09976_consen 134 YDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.00 E-value=9.2e-06 Score=49.19 Aligned_cols=33 Identities=30% Similarity=0.599 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 008105 119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPD 151 (577)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~ 151 (577)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566667777777777777777766666666665
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.00 E-value=1.2e-05 Score=48.66 Aligned_cols=33 Identities=61% Similarity=1.020 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008105 434 TYNTLIDGLAKKGCMEKAMVLYGQMMENGISPD 466 (577)
Q Consensus 434 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 466 (577)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666666555
No 144
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0072 Score=53.59 Aligned_cols=188 Identities=13% Similarity=0.056 Sum_probs=137.3
Q ss_pred cCCHHHHHHHHHHHHhC---C-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 008105 340 RGCWDAVDKILDIMNEA---S-HSPTVF-TYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLN 414 (577)
Q Consensus 340 ~g~~~~a~~~~~~~~~~---~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 414 (577)
..+.++..+++.++... | ..++.. .|..+.-+....|+.+.|...++++..+- +-+..+-..-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 34566777777666532 2 334433 45556667778899999999999988773 333333333333455679999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105 415 EALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIG 494 (577)
Q Consensus 415 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 494 (577)
+|.++++.+.+.+ +.|..++--=+...-..|+.-+|++-+.+..+. +..|...|..+...|...|+++.|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999999887 667777777777777788888888888888775 56799999999999999999999999999998
Q ss_pred hCCCCccHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHC
Q 008105 495 KRGNKMRNSAYRLVIHGLCKSK---KVDMAIQVLELMISS 531 (577)
Q Consensus 495 ~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 531 (577)
-.. +.++..+..+.+.+.-.| +..-|.+++.+.++.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 643 224555566666655444 677889999998864
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.93 E-value=1.9e-05 Score=47.39 Aligned_cols=33 Identities=39% Similarity=0.664 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008105 433 ITYNTLIDGLAKKGCMEKAMVLYGQMMENGISP 465 (577)
Q Consensus 433 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 465 (577)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355566666666666666666666665555554
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.92 E-value=1.7e-05 Score=47.58 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIP 150 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~ 150 (577)
.+||.++++|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777766655
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.89 E-value=0.00052 Score=66.96 Aligned_cols=124 Identities=19% Similarity=0.240 Sum_probs=94.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008105 190 YNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCK 269 (577)
Q Consensus 190 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 269 (577)
-..|+..+...++++.|.++|+++.+.. |+. ...+++.+...++-.+|.+++++.+.. .+.+..........+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence 3445566666788999999999988663 543 445777777788888888888888865 35566666666777888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105 270 QCGIARAIEVLDDMAIEGCSPD-IVTYNSLVNFSCKQGKYDDAVLVINNLLS 320 (577)
Q Consensus 270 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 320 (577)
.++.+.|+++.+++... .|+ -.+|..|..+|.+.|+++.|+..++.+.-
T Consensus 247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 88888888888888876 344 46888888888888888888888877653
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.80 E-value=0.00096 Score=53.82 Aligned_cols=98 Identities=12% Similarity=-0.013 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHH
Q 008105 119 TNNKILQNFCSRGKLTDASKLIDIMARRNQI--PDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGV--PDTITYNMMV 194 (577)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li 194 (577)
++..++..+.+.|++++|.+.|+.+.+.... .....+..+...+.+.|++++|.+.|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3455566666667777777777666654321 11234455666666666666666666666554211 1134455555
Q ss_pred HHHHhcCChHHHHHHHHHHhhC
Q 008105 195 GGLCKRGQIRSAIALLDEMSVS 216 (577)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~~~~~ 216 (577)
.++.+.|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5666666666666666666554
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.78 E-value=0.00059 Score=55.09 Aligned_cols=93 Identities=15% Similarity=0.073 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--ccHHHHHHHH
Q 008105 436 NTLIDGLAKKGCMEKAMVLYGQMMENGISPD----DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNK--MRNSAYRLVI 509 (577)
Q Consensus 436 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li 509 (577)
..+...+.+.|++++|.+.|+++.+.. |+ ...+..+..++.+.|++++|.+.|+.+...... .....+..+.
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 334444444455555555555444321 11 123333444444444444444444444432111 0122333344
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 008105 510 HGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 510 ~~~~~~g~~~~A~~~~~~m~~ 530 (577)
.++.+.|++++|.+.++++.+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHH
Confidence 444444444444444444443
No 150
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.77 E-value=0.00052 Score=67.28 Aligned_cols=125 Identities=16% Similarity=0.140 Sum_probs=101.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH
Q 008105 356 ASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSK--NCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLI 433 (577)
Q Consensus 356 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 433 (577)
.+.+.+......+++.+....+.+.+..++.+.... ....-+.|..++++.|.+.|..++++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 345567777888888888888888899888888765 222334455689999999999999999999988999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008105 434 TYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRA 480 (577)
Q Consensus 434 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 480 (577)
++|.|++.+.+.|++..|.++...|..++...+..|+..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998777667777777666666654
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.74 E-value=0.00059 Score=52.10 Aligned_cols=94 Identities=11% Similarity=0.076 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008105 120 NNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCK 199 (577)
Q Consensus 120 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 199 (577)
+..+...+...|++++|...++++.+.. +.+...+..+...+...+++++|.+.++...+.. +.+...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4455666666677777777777666543 2233455556666666666666666666666554 2233455556666666
Q ss_pred cCChHHHHHHHHHHhh
Q 008105 200 RGQIRSAIALLDEMSV 215 (577)
Q Consensus 200 ~g~~~~A~~~~~~~~~ 215 (577)
.|++++|...++...+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666655543
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.71 E-value=0.00069 Score=51.69 Aligned_cols=93 Identities=13% Similarity=0.191 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008105 155 CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD 234 (577)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 234 (577)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.|+...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3344455555666666666666665543 2233445555555555666666666666555443 2233455555555555
Q ss_pred CCChHHHHHHHHHHH
Q 008105 235 NGKFKQAIGFWKDQL 249 (577)
Q Consensus 235 ~~~~~~A~~~~~~~~ 249 (577)
.|++++|...+....
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 555555555555544
No 153
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.69 E-value=0.00069 Score=66.40 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=106.1
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 008105 321 RGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEAS--HSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIV 398 (577)
Q Consensus 321 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 398 (577)
.+...+......+++.+....+.+.+..++....... ...-..|..+++..|.+.|..+.++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 4445677788889999999999999999998887652 22233456799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008105 399 TYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKK 445 (577)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 445 (577)
+++.+++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999988887777778877777777665
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.68 E-value=4.8e-05 Score=44.46 Aligned_cols=29 Identities=28% Similarity=0.626 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 008105 119 TNNKILQNFCSRGKLTDASKLIDIMARRN 147 (577)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~ 147 (577)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.63 E-value=0.00012 Score=54.98 Aligned_cols=80 Identities=20% Similarity=0.270 Sum_probs=34.2
Q ss_pred cCChhhHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008105 130 RGKLTDASKLIDIMARRNQI-PDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIA 208 (577)
Q Consensus 130 ~g~~~~A~~l~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 208 (577)
.|+++.|+.+|+++.+.... ++...+..+..+|.+.|++++|.++++. .+.+. .+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 34555555555555554321 1233333345555555555555555544 21111 111222233444555555555555
Q ss_pred HHH
Q 008105 209 LLD 211 (577)
Q Consensus 209 ~~~ 211 (577)
.|+
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 156
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.62 E-value=0.00093 Score=51.21 Aligned_cols=80 Identities=15% Similarity=0.287 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHH
Q 008105 120 NNKILQNFCSRGKLTDASKLIDIMARRNQ-IPDFHFCINLIRGLIRID--------RIEKASKVLQIMVMSGGVPDTITY 190 (577)
Q Consensus 120 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~~~~~g~~~~~~~~ 190 (577)
-..-|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-+++.+++.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556666667888888889988888888 888888888888877542 234456666667666667777777
Q ss_pred HHHHHHHHh
Q 008105 191 NMMVGGLCK 199 (577)
Q Consensus 191 ~~li~~~~~ 199 (577)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 766665543
No 157
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.62 E-value=7.9e-05 Score=43.52 Aligned_cols=29 Identities=45% Similarity=0.790 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008105 434 TYNTLIDGLAKKGCMEKAMVLYGQMMENG 462 (577)
Q Consensus 434 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 462 (577)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.60 E-value=0.00018 Score=53.92 Aligned_cols=80 Identities=16% Similarity=0.212 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHHHhhCCC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 008105 480 ADQVEEAVDLLKEIGKRGN-KMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPD-DTVFSTIVKKVADDGMTEEAY 557 (577)
Q Consensus 480 ~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 557 (577)
.|+++.|+.+++++.+... .++...+..+..++.+.|++++|..++++ . ...|+ ......+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3455556666655554322 11333344455556666666666666655 2 11222 233334455566666666666
Q ss_pred HHHHH
Q 008105 558 KLWQK 562 (577)
Q Consensus 558 ~~~~~ 562 (577)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55543
No 159
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.59 E-value=0.052 Score=49.93 Aligned_cols=81 Identities=14% Similarity=0.135 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFC---INLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNM 192 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 192 (577)
++..+-.....+.+.|++++|.+.|+.+....+.+ ...- ..++.++.+.+++++|...+++..+..+.....-|..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 44444456666778899999999999988864332 2222 3356777888999999999988888754433334444
Q ss_pred HHHHH
Q 008105 193 MVGGL 197 (577)
Q Consensus 193 li~~~ 197 (577)
.+.+.
T Consensus 110 Y~~g~ 114 (243)
T PRK10866 110 YMRGL 114 (243)
T ss_pred HHHHH
Confidence 44443
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.59 E-value=0.003 Score=54.89 Aligned_cols=94 Identities=11% Similarity=-0.033 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPD--FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMM 193 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 193 (577)
....+..+...+...|++++|...|++..+....++ ...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 345678888888999999999999998887643332 3577778888889999999999998888764 3356667777
Q ss_pred HHHHHhcCChHHHHHHH
Q 008105 194 VGGLCKRGQIRSAIALL 210 (577)
Q Consensus 194 i~~~~~~g~~~~A~~~~ 210 (577)
...+...|+...+..-+
T Consensus 113 g~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHHcCChHhHhhCH
Confidence 77777777755544433
No 161
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.58 E-value=0.084 Score=51.06 Aligned_cols=259 Identities=11% Similarity=0.111 Sum_probs=132.5
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChh------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--
Q 008105 126 NFCSRGKLTDASKLIDIMARRNQIPDFH------FCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGL-- 197 (577)
Q Consensus 126 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~-- 197 (577)
.+-+.+++.+|.++|.++.+.- ..+.. ..+.++++|.. .+.+.....+....+.. | ...|-.+..++
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHH
Confidence 3467888999999998887652 22222 23345666653 34455555555554432 2 22333343332
Q ss_pred HhcCChHHHHHHHHHHhhC--CCCC------------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC----CCCCHHH
Q 008105 198 CKRGQIRSAIALLDEMSVS--GCEP------------DVITYNTILRTMFDNGKFKQAIGFWKDQLRKG----CPPYLIT 259 (577)
Q Consensus 198 ~~~g~~~~A~~~~~~~~~~--g~~~------------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~ 259 (577)
-+.+.+++|.+.+..-... +..+ |...=+..+.++...|++.++..+++++...= ..-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3678888888877665543 2111 22223456677888999999998888876643 3467888
Q ss_pred HHHHHHHHHHcC--------C-------HHHHHHHHHHHHHc------CCCCCHhhHHHHHHHHHhc--CCHHHHHHHHH
Q 008105 260 YTILIEQVCKQC--------G-------IARAIEVLDDMAIE------GCSPDIVTYNSLVNFSCKQ--GKYDDAVLVIN 316 (577)
Q Consensus 260 ~~~l~~~~~~~g--------~-------~~~A~~~~~~~~~~------~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~ 316 (577)
|+.++-.+.+.= . ++.+.-..++|... .+.|.......++....-. .+..--+++++
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 887555444320 0 12222222222221 1222222222222221111 11122233333
Q ss_pred HHhhCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008105 317 NLLSRGMEPNSI-TYNTLLHSLGSRGCWDAVDKILDIMNEASHS----PTVFTYNILINGLCKYGLVDRAINSFNQMVSK 391 (577)
Q Consensus 317 ~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 391 (577)
.....-+.|+.. ....+...+.+ +.+++..+.+.+....+. .-..++..++....+.++..+|...+.-+...
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 333334455533 23334444433 555555555554433211 12346777777778888888887777665543
No 162
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.58 E-value=0.14 Score=53.71 Aligned_cols=192 Identities=11% Similarity=0.074 Sum_probs=114.5
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008105 127 FCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSA 206 (577)
Q Consensus 127 ~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 206 (577)
+.+.|+.++|..+++.....+.. |..|...+-..|...++.++|..++++.... .|+......+..+|.+.+++.+-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888776655433 7777888888888888888888888888765 45566667777778887776554
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhC-CC---------hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHH
Q 008105 207 IALLDEMSVSGCEPDVITYNTILRTMFDN-GK---------FKQAIGFWKDQLRKG-CPPYLITYTILIEQVCKQCGIAR 275 (577)
Q Consensus 207 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~-~~---------~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 275 (577)
.+.=-++-+. ++.+...+=++++.+.+. .. ..-|.+.++.+.+.+ ---+..-...-...+...|++++
T Consensus 130 Qkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 4333333322 123333333344433331 11 223455555555543 11112222222334556778888
Q ss_pred HHHHHH-HHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 008105 276 AIEVLD-DMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRG 322 (577)
Q Consensus 276 A~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 322 (577)
|++++. .....-..-+...-+.-+..+...+++.+..++-.++...|
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 888873 33333223333444556677777888888888888877775
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.58 E-value=0.0023 Score=60.41 Aligned_cols=129 Identities=12% Similarity=0.045 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIR-IDRIEKASKVLQIMVMSGGVPDTITYNMMVGG 196 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 196 (577)
.+|..+++...+.+..+.|+.+|.++.+.+ ..+..+|......-.+ .++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666666666666666666666665432 2233333333333222 34455566666666654 24455666666666
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 008105 197 LCKRGQIRSAIALLDEMSVSGCEPDV----ITYNTILRTMFDNGKFKQAIGFWKDQLR 250 (577)
Q Consensus 197 ~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~ 250 (577)
+.+.|+.+.|..+|++.... -+.. ..|...+..=.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666543 2222 3555555555555555555555555544
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.53 E-value=0.0025 Score=62.45 Aligned_cols=92 Identities=10% Similarity=-0.010 Sum_probs=63.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008105 123 ILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQ 202 (577)
Q Consensus 123 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 202 (577)
....+...|++++|++.|+++++... .+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 34556677777777777777777643 356666667777777777777777777777664 3355666667777777777
Q ss_pred hHHHHHHHHHHhhC
Q 008105 203 IRSAIALLDEMSVS 216 (577)
Q Consensus 203 ~~~A~~~~~~~~~~ 216 (577)
+++|...|++..+.
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777777665
No 165
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.52 E-value=0.0037 Score=58.94 Aligned_cols=130 Identities=7% Similarity=-0.007 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008105 398 VTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAK-KGCMEKAMVLYGQMMENGISPDDITHRTLIWG 476 (577)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 476 (577)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|-.....-.+ .++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666666666666777777777776443 2233334333333222 45555577777776654 34556666677777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcc---HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105 477 FCRADQVEEAVDLLKEIGKRGNKMR---NSAYRLVIHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 477 ~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 530 (577)
+.+.++.+.|..+|++.... +.++ ...|...+..-.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777776653 2222 23666677666677777777777776664
No 166
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.49 E-value=0.0023 Score=49.09 Aligned_cols=74 Identities=18% Similarity=0.331 Sum_probs=36.5
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008105 404 LGALCKEGMLNEALQLLHLLNGSSC-SPCLITYNTLIDGLAKKG--------CMEKAMVLYGQMMENGISPDDITHRTLI 474 (577)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~li 474 (577)
|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333444555555555555555555 455555555555544322 1223444555555555555555555555
Q ss_pred HHH
Q 008105 475 WGF 477 (577)
Q Consensus 475 ~~~ 477 (577)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 444
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.48 E-value=0.0027 Score=52.57 Aligned_cols=96 Identities=9% Similarity=0.021 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGL 197 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 197 (577)
...-.+...+...|++++|.++|+......+. +..-|..|..++-..|++++|+..|....... +-|+..+-.+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 34445566667777777777777776665432 55556666666666677777777777776665 34556666666677
Q ss_pred HhcCChHHHHHHHHHHhh
Q 008105 198 CKRGQIRSAIALLDEMSV 215 (577)
Q Consensus 198 ~~~g~~~~A~~~~~~~~~ 215 (577)
...|+.+.|.+.|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777766554
No 168
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.46 E-value=0.035 Score=52.59 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMAR 145 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~ 145 (577)
..|+.....|...|++++|.+.|.+..+
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 4566666777777777777777666543
No 169
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.46 E-value=0.0031 Score=52.25 Aligned_cols=97 Identities=13% Similarity=-0.080 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 008105 432 LITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHG 511 (577)
Q Consensus 432 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 511 (577)
....-.+..-+...|++++|..+|+-+.... +-+..-|..|..++-..|++++|+..|......++ -|+..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 4444555556667788888888888776643 23455667777777777888888888887776553 355666667777
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 008105 512 LCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 512 ~~~~g~~~~A~~~~~~m~~ 530 (577)
+...|+.+.|.+.|+..+.
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7788888888888877764
No 170
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.46 E-value=0.0072 Score=48.24 Aligned_cols=108 Identities=16% Similarity=0.083 Sum_probs=69.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 008105 122 KILQNFCSRGKLTDASKLIDIMARRNQIPD--FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVP--DTITYNMMVGGL 197 (577)
Q Consensus 122 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~ 197 (577)
.+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++.....+.+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 455677778888888888888888776543 3355567777888888888888888887653210 112222233456
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105 198 CKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMF 233 (577)
Q Consensus 198 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 233 (577)
...|+.++|.+.+-.... ++...|.--|..|.
T Consensus 86 ~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 677888888887766552 33335555554443
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.45 E-value=0.0049 Score=53.36 Aligned_cols=94 Identities=16% Similarity=-0.082 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105 117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIP--DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV 194 (577)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 194 (577)
...|..+...+...|++++|...|++.......+ ...++..+...+.+.|++++|+..++...... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4667778888888888888888888887653332 23467777888888888888888888887653 33345566666
Q ss_pred HHHH-------hcCChHHHHHHHH
Q 008105 195 GGLC-------KRGQIRSAIALLD 211 (577)
Q Consensus 195 ~~~~-------~~g~~~~A~~~~~ 211 (577)
..+. +.|+++.|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 6666 5556554444443
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.44 E-value=0.0073 Score=52.45 Aligned_cols=92 Identities=10% Similarity=-0.019 Sum_probs=68.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 008105 151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPD--TITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTI 228 (577)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 228 (577)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..... +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344566777788888999999999999887643332 4577888888899999999999998888753 3356667777
Q ss_pred HHHHHhCCChHHHHH
Q 008105 229 LRTMFDNGKFKQAIG 243 (577)
Q Consensus 229 i~~~~~~~~~~~A~~ 243 (577)
...+...|+...+..
T Consensus 113 g~~~~~~g~~~~a~~ 127 (172)
T PRK02603 113 AVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHcCChHhHhh
Confidence 777777777555443
No 173
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.44 E-value=0.047 Score=46.14 Aligned_cols=155 Identities=14% Similarity=0.041 Sum_probs=94.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 008105 369 INGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCM 448 (577)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 448 (577)
..+..+.=+++....-..+-.. ..|+...-..|..++...|+..+|...|++....-...|......+.++....+++
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 63 LMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 3344444444444333333222 35666666677777777777777777777776655566677777777777777777
Q ss_pred HHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHH
Q 008105 449 EKAMVLYGQMMENG---ISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVL 525 (577)
Q Consensus 449 ~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 525 (577)
..|...++++.+.. -.|| +...+...+...|++++|..-|+.....- |+...-......+.+.|+.++|..-+
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCC--chHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 77777777776642 1222 34455666777777777777777776642 33333333344566677766666555
Q ss_pred HHHH
Q 008105 526 ELMI 529 (577)
Q Consensus 526 ~~m~ 529 (577)
....
T Consensus 217 ~~v~ 220 (251)
T COG4700 217 VAVV 220 (251)
T ss_pred HHHH
Confidence 4444
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.38 E-value=0.015 Score=59.76 Aligned_cols=65 Identities=14% Similarity=0.040 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008105 503 SAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVF 569 (577)
Q Consensus 503 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (577)
..|..+.-.....|++++|...++++.+. .|+...|..+.+.+...|+.++|.+.+++....++.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 33444433333445555555555555533 244445555555555555555555555555554443
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.37 E-value=0.0047 Score=53.48 Aligned_cols=81 Identities=6% Similarity=-0.201 Sum_probs=48.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008105 152 FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVP--DTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTIL 229 (577)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 229 (577)
...+..+...+...|++++|...|+........+ ...+|..+...|...|++++|.+.+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445556666667777777777777776553222 23456667777777777777777777766542 22344444444
Q ss_pred HHHH
Q 008105 230 RTMF 233 (577)
Q Consensus 230 ~~~~ 233 (577)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 176
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.35 E-value=0.0068 Score=59.42 Aligned_cols=91 Identities=10% Similarity=-0.019 Sum_probs=70.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCh
Q 008105 159 IRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKF 238 (577)
Q Consensus 159 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~ 238 (577)
...+...|++++|++.|+++++.. +.+...|..+..+|.+.|++++|+..++++.+.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 345567788888888888888775 3466777777888888888888888888887764 44677777788888888888
Q ss_pred HHHHHHHHHHHHC
Q 008105 239 KQAIGFWKDQLRK 251 (577)
Q Consensus 239 ~~A~~~~~~~~~~ 251 (577)
++|+..|++.++.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887765
No 177
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.16 Score=48.63 Aligned_cols=89 Identities=16% Similarity=0.081 Sum_probs=48.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 008105 371 GLCKYGLVDRAINSFNQMVSK---NCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGC 447 (577)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 447 (577)
-..+.|++..|.+.|.+.+.. +..|+...|.....+..+.|+.++|+.--+.....+ +.-...|..-..++...++
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEK 336 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHH
Confidence 345567777777777766654 234445555555556666677777766665555432 0001112222233444566
Q ss_pred HHHHHHHHHHHHH
Q 008105 448 MEKAMVLYGQMME 460 (577)
Q Consensus 448 ~~~A~~~~~~m~~ 460 (577)
|++|.+-|+...+
T Consensus 337 ~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666654
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.33 E-value=0.06 Score=45.52 Aligned_cols=134 Identities=17% Similarity=0.063 Sum_probs=82.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCHHHHHH
Q 008105 359 SPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSC-SPCLITYNT 437 (577)
Q Consensus 359 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~ 437 (577)
.|++..--.|..+....|+..+|...|++...--...|......+.++....+++.+|...++.+-+... .-+..+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4666666667777777777777777777776654555666667777777777777777777776655431 111223345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105 438 LIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIG 494 (577)
Q Consensus 438 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 494 (577)
+.+.+...|.+..|+.-|+..... -|+...-......+.+.|+.+++..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 566677777777777777777664 3554444444445556666666555444443
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.31 E-value=0.099 Score=48.07 Aligned_cols=57 Identities=11% Similarity=0.070 Sum_probs=37.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105 508 VIHGLCKSKKVDMAIQVLELMISS--RYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLI 564 (577)
Q Consensus 508 li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 564 (577)
+.+-|.+.|.+..|..-++.+++. +.+........+..+|...|..++|......+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 555577777777777777777752 222334555666777777777777777666553
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.30 E-value=0.016 Score=59.39 Aligned_cols=61 Identities=11% Similarity=-0.040 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008105 467 DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMI 529 (577)
Q Consensus 467 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 529 (577)
...|..+.......|++++|...+++....+ |+...|..+...+...|+.++|.+.+++..
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445544444444566666666666655543 345555666666666666666666666655
No 181
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.27 E-value=0.0082 Score=52.28 Aligned_cols=104 Identities=21% Similarity=0.239 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHH
Q 008105 360 PTVFTYNILINGLCKY-----GLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLIT 434 (577)
Q Consensus 360 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 434 (577)
.+..+|..+++.|.+. |..+=....++.|.+-|+..|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~----------- 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE----------- 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------
Confidence 4556666666666543 4455555555666666666666666666655543 2211 00111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008105 435 YNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQ 482 (577)
Q Consensus 435 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 482 (577)
..-| -.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 112 ----F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ----FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111 12345677888888888888888888888888766554
No 182
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.25 E-value=0.01 Score=51.77 Aligned_cols=105 Identities=18% Similarity=0.206 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHH
Q 008105 429 SPCLITYNTLIDGLAK-----KGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNS 503 (577)
Q Consensus 429 ~p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 503 (577)
..+..+|..+++.|.+ .|..+=....+..|.+.|+.-|..+|+.|++.+=+ |.+- |..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n- 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN- 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-
Confidence 3466777777777763 35566666666777777777777777777776543 2111 110
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008105 504 AYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGM 552 (577)
Q Consensus 504 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 552 (577)
.+..+..-| -.+.+-|++++++|...|+-||.+++..|++.+++.+.
T Consensus 107 ~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 000000000 12345566777777777777777777777777755553
No 183
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.22 E-value=0.21 Score=47.76 Aligned_cols=109 Identities=16% Similarity=0.091 Sum_probs=68.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008105 329 TYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALC 408 (577)
Q Consensus 329 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 408 (577)
+.+..+.-+...|+...|.++-.+.. -|+..-|-..+.+++..+++++-..+-.. +-++.-|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 33444555556677777766655442 26777777777777777777766554321 224566777777777
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008105 409 KEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQ 457 (577)
Q Consensus 409 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 457 (577)
+.|...+|..+...+ .+..-+..|.+.|++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777766652 124456667777777777655443
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.22 E-value=0.0014 Score=46.70 Aligned_cols=50 Identities=16% Similarity=0.281 Sum_probs=20.3
Q ss_pred cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008105 130 RGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVM 180 (577)
Q Consensus 130 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 180 (577)
.|++++|+++|+++....+. +...+..+..+|.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444443211 333333444444444444444444444443
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.22 E-value=0.0016 Score=46.52 Aligned_cols=65 Identities=15% Similarity=0.114 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcC
Q 008105 502 NSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDG-MTEEAYKLWQKLIEWK 567 (577)
Q Consensus 502 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 567 (577)
...|..+...+...|++++|+..|++.++.. +.+...|..+..++...| ++++|++.+++.++.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 4456666666667777777777777766532 224556666666677776 5677777777666644
No 186
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.11 Score=49.79 Aligned_cols=156 Identities=13% Similarity=0.015 Sum_probs=89.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCChhHHHHHHHHHhhCCCCCCHHHH------------
Q 008105 370 NGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLG--ALCKEGMLNEALQLLHLLNGSSCSPCLITY------------ 435 (577)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~------------ 435 (577)
..+.-.|+.++|...-...++.+ ..+. +...++ ++--.++.+.|...|++....+ |+...-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNA--EALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchh--HHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 34455677777777766666553 2222 222333 2334567777777777766653 332221
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 008105 436 -NTLIDGLAKKGCMEKAMVLYGQMMEN---GISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHG 511 (577)
Q Consensus 436 -~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 511 (577)
..=..-..+.|.+.+|.+.|.+.+.. ++.|+...|.....+..+.|+.++|+.--++....+.. -...|..-..+
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c 330 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANC 330 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHH
Confidence 11123345677888888888887752 24455556666666677778888888777777653210 11122222334
Q ss_pred HHhcCChHHHHHHHHHHHHC
Q 008105 512 LCKSKKVDMAIQVLELMISS 531 (577)
Q Consensus 512 ~~~~g~~~~A~~~~~~m~~~ 531 (577)
+...++|++|.+-+++..+.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44567777777777777653
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.16 E-value=0.0015 Score=46.52 Aligned_cols=65 Identities=20% Similarity=0.313 Sum_probs=53.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008105 162 LIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTIL 229 (577)
Q Consensus 162 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 229 (577)
+.+.|++++|+++|+.+.... +-+...+..+..+|.+.|++++|.++++++... .|+...|..++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 357899999999999999886 447888889999999999999999999999877 57755555544
No 188
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.15 E-value=0.0054 Score=55.90 Aligned_cols=99 Identities=15% Similarity=0.172 Sum_probs=57.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHH
Q 008105 162 LIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQA 241 (577)
Q Consensus 162 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A 241 (577)
+.+.++|++|+..|.+.++.. +.|.+.|..-..+|++.|.++.|++-.+.....+ +....+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 455566666666666666554 3455555556666666666666666666655443 22345566666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH
Q 008105 242 IGFWKDQLRKGCPPYLITYTILI 264 (577)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~l~ 264 (577)
++.|++.++ +.|+-.+|-.=+
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHH
Confidence 666666554 344444444333
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.12 E-value=0.026 Score=53.46 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-----cc
Q 008105 434 TYNTLIDGLAKK-GCMEKAMVLYGQMME----NGISPD--DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNK-----MR 501 (577)
Q Consensus 434 ~~~~li~~~~~~-g~~~~A~~~~~~m~~----~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~ 501 (577)
.+..+...|-.. |++++|.+.|++..+ .| .+. ..++..+...+.+.|++++|.++|+++...... .+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 445556666677 888999988888764 22 111 335667778888899999999999888764322 12
Q ss_pred HH-HHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 008105 502 NS-AYRLVIHGLCKSKKVDMAIQVLELMISS--RYKPDD--TVFSTIVKKVADDGMTEEAYKL 559 (577)
Q Consensus 502 ~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~--~~~~~l~~~~~~~g~~~~A~~~ 559 (577)
.. .|...+-++...|++-.|.+.+++.... ++..+. .....|+.++ +.|+.+.-...
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~a 256 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEA 256 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHH
Confidence 21 2333344566678899999999888743 333332 2344455544 34444443333
No 190
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.11 E-value=0.0088 Score=54.55 Aligned_cols=98 Identities=17% Similarity=0.132 Sum_probs=71.1
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 008105 405 GALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPD-DITHRTLIWGFCRADQV 483 (577)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~ 483 (577)
.-..+.+++++|+..|.+.++.. +.|.+-|..=..+|.+.|.++.|++=.+..+.. .|. ..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 34566778888888888887765 556777777778888888888888777777663 343 45777888888888888
Q ss_pred HHHHHHHHHHhhCCCCccHHHHHH
Q 008105 484 EEAVDLLKEIGKRGNKMRNSAYRL 507 (577)
Q Consensus 484 ~~A~~~~~~m~~~~~~~~~~~~~~ 507 (577)
++|.+.|++..+ +.|+..+|..
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHH
Confidence 888888887776 3566665544
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.09 E-value=0.0029 Score=44.56 Aligned_cols=59 Identities=15% Similarity=0.250 Sum_probs=36.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105 509 IHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKV 568 (577)
Q Consensus 509 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (577)
...+...|++++|.+.|++.++.. +-+...+..+..++.+.|++++|..+++++++..|
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 445666677777777777766532 22455666666666777777777777776666444
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.05 E-value=0.0029 Score=45.20 Aligned_cols=64 Identities=11% Similarity=0.135 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRID-RIEKASKVLQIMVM 180 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~ 180 (577)
+..+|..+...+.+.|++++|+..|++.++.++ .+...|..+..++.+.| ++++|++.++..++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345666666777777777777777777666542 25556666666666666 56666666666654
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.05 E-value=0.0027 Score=44.70 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=32.7
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008105 124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMS 181 (577)
Q Consensus 124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 181 (577)
...+.+.|++++|++.|+++++.. +-+...+..+..++.+.|++++|...|+++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445566666666666666666554 225555555666666666666666666665543
No 194
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.05 E-value=0.34 Score=46.96 Aligned_cols=405 Identities=10% Similarity=0.066 Sum_probs=198.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105 114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMM 193 (577)
Q Consensus 114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 193 (577)
+.|..+|-.||+-|...|..++-++++++|..- ++--..+|...+.+=....++.....+|.+.+... .+...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHH
Confidence 457889999999999999999999999999764 44456778888888888899999999999998763 457777777
Q ss_pred HHHHHhcCCh------HHHHHHHHHHh-hCCCCC-CHHHHHHHHHHHH---------hCCChHHHHHHHHHHHHCCCCCC
Q 008105 194 VGGLCKRGQI------RSAIALLDEMS-VSGCEP-DVITYNTILRTMF---------DNGKFKQAIGFWKDQLRKGCPPY 256 (577)
Q Consensus 194 i~~~~~~g~~------~~A~~~~~~~~-~~g~~~-~~~~~~~li~~~~---------~~~~~~~A~~~~~~~~~~~~~~~ 256 (577)
++--.+.... -...+.|+-.. ..++.| ....|+..+..+- ++.+.+...+.+.+++...+..-
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nl 195 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNL 195 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccH
Confidence 7644333211 11223333332 234444 3334554443322 22334455566666654311111
Q ss_pred HHHHH------HHHHHH-HH--cC----CHHHHHHHHHHHHH--cCCC----CCHhhHH-----------HHHHHHHhc-
Q 008105 257 LITYT------ILIEQV-CK--QC----GIARAIEVLDDMAI--EGCS----PDIVTYN-----------SLVNFSCKQ- 305 (577)
Q Consensus 257 ~~~~~------~l~~~~-~~--~g----~~~~A~~~~~~~~~--~~~~----~~~~~~~-----------~li~~~~~~- 305 (577)
...|+ .=+... ++ .| -+-.|.+.++++.. +|.. .+..++| ..|..-...
T Consensus 196 eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~ 275 (660)
T COG5107 196 EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENG 275 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCC
Confidence 11111 111100 00 01 13345555555432 2211 1112222 222211111
Q ss_pred ----CC-HHH-HHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 008105 306 ----GK-YDD-AVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVD 379 (577)
Q Consensus 306 ----g~-~~~-A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 379 (577)
|+ ..+ .--++++.... +......|----..+...++-+.|.+....-.+. .|+.. -.+-..|.-.++.+
T Consensus 276 l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~--~~lse~yel~nd~e 350 (660)
T COG5107 276 LKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLT--MFLSEYYELVNDEE 350 (660)
T ss_pred cccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchh--eeHHHHHhhcccHH
Confidence 11 111 11112222211 0112223333333344556666666555443322 12211 11112222223333
Q ss_pred HHHHHHHHHHHC--------------C---------------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC-CC
Q 008105 380 RAINSFNQMVSK--------------N---------------CQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSS-CS 429 (577)
Q Consensus 380 ~A~~~~~~m~~~--------------~---------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~ 429 (577)
.....|+...+. + ...-..+|...++.-.+..-++.|..+|-+..+.+ +.
T Consensus 351 ~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~ 430 (660)
T COG5107 351 AVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVG 430 (660)
T ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCC
Confidence 333333322210 0 00112345555555556666666667776666665 55
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--cHHHHH
Q 008105 430 PCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDIT-HRTLIWGFCRADQVEEAVDLLKEIGKRGNKM--RNSAYR 506 (577)
Q Consensus 430 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~ 506 (577)
+++..+++++..++. |+..-|..+|+--... -||... -+-.+.-+..-++-+.|..+|+....+ +.. -...|.
T Consensus 431 h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~ 506 (660)
T COG5107 431 HHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYD 506 (660)
T ss_pred cceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHH
Confidence 666666666665543 4556666666654432 133332 234445555666666666666644321 111 134566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 008105 507 LVIHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 507 ~li~~~~~~g~~~~A~~~~~~m~~ 530 (577)
.+|+--..-|+...+..+=++|..
T Consensus 507 kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 507 KMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHHHhhcchHHHHhHHHHHHH
Confidence 666666666666666666666553
No 195
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.04 E-value=0.0066 Score=57.46 Aligned_cols=265 Identities=13% Similarity=0.050 Sum_probs=159.0
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCC-CCCHHHHHHHHH
Q 008105 125 QNFCSRGKLTDASKLIDIMARRNQIPDF----HFCINLIRGLIRIDRIEKASKVLQIMVM----SGG-VPDTITYNMMVG 195 (577)
Q Consensus 125 ~~~~~~g~~~~A~~l~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g~-~~~~~~~~~li~ 195 (577)
.-+|+.|+....+.+|+..++.|.. |. .+|..|.++|...+++++|++++..=+. .|- .-...+-..|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 5679999999999999999998754 33 3566788888889999999987643211 010 012223334555
Q ss_pred HHHhcCChHHHHHHHHHH----hhCCC-CCCHHHHHHHHHHHHhCCC--------------------hHHHHHHHHHHHH
Q 008105 196 GLCKRGQIRSAIALLDEM----SVSGC-EPDVITYNTILRTMFDNGK--------------------FKQAIGFWKDQLR 250 (577)
Q Consensus 196 ~~~~~g~~~~A~~~~~~~----~~~g~-~~~~~~~~~li~~~~~~~~--------------------~~~A~~~~~~~~~ 250 (577)
.+--.|.+++|.....+- .+.|- ......+..+...|...|+ ++.|.++|.+-++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 555667777776543322 22221 1123344445666654432 2344444443222
Q ss_pred C----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105 251 K----G-CPPYLITYTILIEQVCKQCGIARAIEVLDDMAI----EGC-SPDIVTYNSLVNFSCKQGKYDDAVLVINNLLS 320 (577)
Q Consensus 251 ~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 320 (577)
. | --.-...|..|...|.-.|+++.|+...+.-.. -|- ......+..+.+++.-.|+++.|.+.++....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 1 1 001123455555666667888888866543221 121 11235677888889999999999988876543
Q ss_pred C----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008105 321 R----GM-EPNSITYNTLLHSLGSRGCWDAVDKILDIMNE----AS-HSPTVFTYNILINGLCKYGLVDRAINSFNQMVS 390 (577)
Q Consensus 321 ~----g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (577)
. |- ........+|.+.|.-..+++.|..++.+-.. .+ ..-....+-+|..+|...|..++|+.+.+.-.+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2 21 22344566677777777788888877754321 11 112456777889999999999999887766543
No 196
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.04 Score=50.63 Aligned_cols=101 Identities=10% Similarity=0.063 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC---CChHHHHHHHHHHHHCCCCCCHHHH
Q 008105 184 VPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDN---GKFKQAIGFWKDQLRKGCPPYLITY 260 (577)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~ 260 (577)
+-|...|-.|...|...|++..|...|.+..+.. .++...+..+..++... ....++.++|++++... +-|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4456666666666666666666666666665543 34555555555444332 23445666666666543 3455555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008105 261 TILIEQVCKQCGIARAIEVLDDMAIE 286 (577)
Q Consensus 261 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 286 (577)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55555666666666666666666654
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.01 E-value=0.057 Score=43.15 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=20.7
Q ss_pred hcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 008105 199 KRGQIRSAIALLDEMSVSGCEPD--VITYNTILRTMFDNGKFKQAIGFWKDQL 249 (577)
Q Consensus 199 ~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~ 249 (577)
..|+.++|..+|++....|.... ...+-.+...+...|++++|..++++..
T Consensus 13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444432221 1223333344444444444444444443
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.084 Score=47.23 Aligned_cols=132 Identities=14% Similarity=0.053 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH-----
Q 008105 189 TYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTIL----- 263 (577)
Q Consensus 189 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l----- 263 (577)
..+.++..+.-.|.+.-...++.+..+..-+.++.....|.+.-.+.|+.+.|...|++..+..-..|..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344445555555555555555555555443445555555555555556666666555544433222233222222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105 264 IEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSR 321 (577)
Q Consensus 264 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 321 (577)
...|.-.+++..|...++++...+ +.|+...|.-.-+..-.|+..+|++.++.|+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 223444555666666666665543 223333333333333345666666666666655
No 199
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.056 Score=49.72 Aligned_cols=101 Identities=20% Similarity=0.177 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHhhH
Q 008105 219 EPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQC---GIARAIEVLDDMAIEGCSPDIVTY 295 (577)
Q Consensus 219 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~ 295 (577)
+-|...|-.|...|...|+++.|..-|.+..+. .++|...+..+..++.... ...++.++|+++.+.+ +-|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 456777777777777777777777777776665 2455555555555444332 2556677777777653 2345555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105 296 NSLVNFSCKQGKYDDAVLVINNLLSR 321 (577)
Q Consensus 296 ~~li~~~~~~g~~~~A~~~~~~m~~~ 321 (577)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 56666677777777777777777765
No 200
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.94 E-value=0.31 Score=49.35 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105 114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMM 193 (577)
Q Consensus 114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 193 (577)
.|-++.+.+=+..|...|.+++|.++-- .|+. ..-|..|...-...=+++-|++
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iac----lgVv--~~DW~~LA~~ALeAL~f~~ARk-------------------- 606 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIAC----LGVT--DTDWRELAMEALEALDFETARK-------------------- 606 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccc----ccee--cchHHHHHHHHHhhhhhHHHHH--------------------
Confidence 4555666777788899999999876532 1222 1223333322222223333333
Q ss_pred HHHHHhcCC--hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 008105 194 VGGLCKRGQ--IRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKD 247 (577)
Q Consensus 194 i~~~~~~g~--~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 247 (577)
+|.+-.+ +-+...-++++.++|-.|+... +...++-.|.+.+|.++|.+
T Consensus 607 --AY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 607 --AYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred --HHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 3333222 2222333556666665566543 33445556777777766654
No 201
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.67 Score=48.02 Aligned_cols=138 Identities=12% Similarity=0.102 Sum_probs=71.6
Q ss_pred CCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHCCC
Q 008105 181 SGGVPDTITYN-----MMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGK--FKQAIGFWKDQLRKGC 253 (577)
Q Consensus 181 ~g~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~--~~~A~~~~~~~~~~~~ 253 (577)
.|++.+..-|. .+|+-+...+.+..|.++-..+...-.. ....|......+.+..+ -+++++..++-++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~- 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK- 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence 35555555443 3455666667777777776666522111 14556666666655532 122333222222221
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105 254 PPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCS----PDIVTYNSLVNFSCKQGKYDDAVLVINNLLS 320 (577)
Q Consensus 254 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 320 (577)
.....+|..+.......|+.+-|..+++.=...+-. .+..-+...+.-+.+.|+.+-...++-.+..
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 134556666666666777777777766543322110 1222344455556667777766666666554
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.035 Score=49.60 Aligned_cols=165 Identities=12% Similarity=0.068 Sum_probs=105.7
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008105 124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI 203 (577)
Q Consensus 124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 203 (577)
++.+-.....+..+++++.=.. ...+.+++.+.-.|.+.-...++.+.++...+.++.....|.+.-.+.|+.
T Consensus 156 i~~~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~ 228 (366)
T KOG2796|consen 156 LANLEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDI 228 (366)
T ss_pred HHHHHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccH
Confidence 3444444444555666654332 345667777777788888888888888777677777778888888888888
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHH-----HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008105 204 RSAIALLDEMSVSGCEPDVITYNT-----ILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIE 278 (577)
Q Consensus 204 ~~A~~~~~~~~~~g~~~~~~~~~~-----li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 278 (577)
+.|...|++..+..-..|..+.+. ....|.-.+++.+|...+.++.... +.|+...|.-.-...-.|+..+|.+
T Consensus 229 k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK 307 (366)
T KOG2796|consen 229 KTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALK 307 (366)
T ss_pred HHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHH
Confidence 888888887654422333333333 3334555677888888887777653 4455555544444555688888888
Q ss_pred HHHHHHHcCCCCCHhhHHHH
Q 008105 279 VLDDMAIEGCSPDIVTYNSL 298 (577)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l 298 (577)
.++.|... .|...+-+++
T Consensus 308 ~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 308 QLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred HHHHHhcc--CCccchhhhH
Confidence 88888876 4444444433
No 203
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.87 E-value=0.44 Score=45.39 Aligned_cols=291 Identities=15% Similarity=0.062 Sum_probs=150.8
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHhhCCCCCCHHHHH----
Q 008105 155 CINLIRGLIR--IDRIEKASKVLQIMVMSGGVPDTITYNMMVGG--LCKRGQIRSAIALLDEMSVSGCEPDVITYN---- 226 (577)
Q Consensus 155 ~~~li~~~~~--~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~---- 226 (577)
|..|-.+++. .|+-..|+++-.+..+. +..|....-.++.+ -.-.|+++.|.+-|+.|.. |+.+-.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLR 158 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLR 158 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHH
Confidence 4444444432 35556666655544321 12233333333332 2235777777777777763 222222
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHhh--HHHHHHHHH
Q 008105 227 TILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEG-CSPDIVT--YNSLVNFSC 303 (577)
Q Consensus 227 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~--~~~li~~~~ 303 (577)
.|.-.--+.|..+.|.++-++....- +.-...+.+.+...|..|+|+.|+++.+.-.... +.++..- -..|+.+-.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 22222234666777766666655432 3334556666777777777777777776554432 2333211 112222211
Q ss_pred ---hcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 008105 304 ---KQGKYDDAVLVINNLLSRGMEPNSIT-YNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVD 379 (577)
Q Consensus 304 ---~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 379 (577)
-..+...|...-.+..+. .||..- -..-..++.+.|+..++-++++.+-+....|+ .+.. -.+.+.|+
T Consensus 238 ~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~l--Y~~ar~gd-- 309 (531)
T COG3898 238 MSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALL--YVRARSGD-- 309 (531)
T ss_pred HHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHH--HHHhcCCC--
Confidence 122345555554444443 445432 22334567777888888888887776654343 2222 12334444
Q ss_pred HHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHH
Q 008105 380 RAINSFNQMVSK-NC-QPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLA-KKGCMEKAMVLYG 456 (577)
Q Consensus 380 ~A~~~~~~m~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~ 456 (577)
.++.-+++.... .+ +.+..+...+..+-...|++..|..--+..... .|....|..|.+.-. ..|+-.++...+.
T Consensus 310 ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 310 TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 233333322211 11 334556666667777777877777665555443 566666666666544 3488888888888
Q ss_pred HHHHCC
Q 008105 457 QMMENG 462 (577)
Q Consensus 457 ~m~~~g 462 (577)
+..+.-
T Consensus 388 qav~AP 393 (531)
T COG3898 388 QAVKAP 393 (531)
T ss_pred HHhcCC
Confidence 777653
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.86 E-value=0.027 Score=52.21 Aligned_cols=94 Identities=17% Similarity=0.089 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CccHHHHHHH
Q 008105 435 YNTLIDGLAKKGCMEKAMVLYGQMMENGISPDD----ITHRTLIWGFCRADQVEEAVDLLKEIGKRGN--KMRNSAYRLV 508 (577)
Q Consensus 435 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~l 508 (577)
|...+..+.+.|++++|...|+.+++.- |+. ..+..+...|...|++++|...|+.+.+.-. ......+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4444443445566666666666666532 332 3455555666666666666666666654211 1123334444
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 008105 509 IHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 509 i~~~~~~g~~~~A~~~~~~m~~ 530 (577)
...+...|+.++|.+++++.++
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4555556666666666666654
No 205
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.83 E-value=0.19 Score=44.89 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=27.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHH
Q 008105 508 VIHGLCKSKKVDMAIQVLELMISSRYKPD----DTVFSTIVKKVADDGMTEEA 556 (577)
Q Consensus 508 li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A 556 (577)
+.+.|.+.|.+..|..-++.+++. -|+ ......++.++.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 455667777777777777777653 222 23445566677777776644
No 206
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.82 E-value=0.11 Score=52.53 Aligned_cols=88 Identities=17% Similarity=0.089 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHH--------
Q 008105 432 LITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNS-------- 503 (577)
Q Consensus 432 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------- 503 (577)
..+...+...+.+...+.-|.++|..|-+. ..+++.....+++.+|..+-++..+. .|+..
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhh
Confidence 344444444455555666666666666431 23455556666777776666655442 22211
Q ss_pred ---HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105 504 ---AYRLVIHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 504 ---~~~~li~~~~~~g~~~~A~~~~~~m~~ 530 (577)
-|...-.+|-+.|+-.+|.++++++..
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122233456667777777777777653
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.77 E-value=0.37 Score=43.05 Aligned_cols=65 Identities=12% Similarity=0.054 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIP--DFHFCINLIRGLIRIDRIEKASKVLQIMVMSG 182 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 182 (577)
...-.....+.+.|++.+|.+.|+.+....+.. -..+...++.++.+.|+++.|...+++.++..
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 334455666777888888888888887763221 22334456677778888888888888877764
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.73 E-value=0.035 Score=51.46 Aligned_cols=99 Identities=9% Similarity=-0.045 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHH
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPD--FHFCINLIRGLIRIDRIEKASKVLQIMVMSGG--VPDTITYNMM 193 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~l 193 (577)
..|+.-+..+.+.|++++|...|+.+++..+... ..++..+...|...|++++|...|+.+.+..+ +.....+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3445545445666777777777777776532211 23555566666777777777777777765421 1123333344
Q ss_pred HHHHHhcCChHHHHHHHHHHhhC
Q 008105 194 VGGLCKRGQIRSAIALLDEMSVS 216 (577)
Q Consensus 194 i~~~~~~g~~~~A~~~~~~~~~~ 216 (577)
...+...|+.++|.++|+++.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55555666667776666666654
No 209
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.73 E-value=0.64 Score=45.20 Aligned_cols=416 Identities=10% Similarity=0.040 Sum_probs=231.2
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 008105 137 SKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVS 216 (577)
Q Consensus 137 ~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 216 (577)
+++-+++.+. +.|..+|-.|+.-|..++.+++.++++++|..- ++--..+|...+.+-....++.....+|.+....
T Consensus 29 lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 29 LRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 3555665543 558999999999999999999999999999743 2334567888888888889999999999998866
Q ss_pred CCCCCHHHHHHHHHHHHhCCCh------HHHHHHHHHHHH-CCCCC-CHHHHHHHHH---HHH------HcCCHHHHHHH
Q 008105 217 GCEPDVITYNTILRTMFDNGKF------KQAIGFWKDQLR-KGCPP-YLITYTILIE---QVC------KQCGIARAIEV 279 (577)
Q Consensus 217 g~~~~~~~~~~li~~~~~~~~~------~~A~~~~~~~~~-~~~~~-~~~~~~~l~~---~~~------~~g~~~~A~~~ 279 (577)
..+...|...+.--.+.... ....+.|+-.+. .++.| ....|+..+. ..- .+.+++...+.
T Consensus 106 --~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 --SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred --hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 35577777766654443321 112233333332 23333 2233333332 222 22334555566
Q ss_pred HHHHHHcCCCCCHhhHHH------HHHHHHh-------cCCHHHHHHHHHHHhh--CCCCC----CHHHHHHH-------
Q 008105 280 LDDMAIEGCSPDIVTYNS------LVNFSCK-------QGKYDDAVLVINNLLS--RGMEP----NSITYNTL------- 333 (577)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~------li~~~~~-------~g~~~~A~~~~~~m~~--~g~~p----~~~~~~~l------- 333 (577)
+.++..--+..=...|+- =++-... .--+-.|.+.++++.. .|... +..+++..
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~ 263 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSN 263 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccch
Confidence 666654311111112221 1111110 1113455556665543 23221 12222221
Q ss_pred ----HHHHHc-----cCC-H-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008105 334 ----LHSLGS-----RGC-W-DAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNT 402 (577)
Q Consensus 334 ----l~~~~~-----~g~-~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 402 (577)
|+-=.. .|+ . ....-++++.... ..-....|----..+...++-+.|+.....-... .|+...+
T Consensus 264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~~~-- 338 (660)
T COG5107 264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLTMF-- 338 (660)
T ss_pred hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchhee--
Confidence 110000 000 0 1111122222211 1122233333333344566777777766554432 2331111
Q ss_pred HHHHHHhcCChhHHHHHHHHH-----------------------------hhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008105 403 VLGALCKEGMLNEALQLLHLL-----------------------------NGSSCSPCLITYNTLIDGLAKKGCMEKAMV 453 (577)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~~-----------------------------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 453 (577)
+-..|.-..+-++....|+.. .-+....-...|...++.-.+...++.|..
T Consensus 339 lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~ 418 (660)
T COG5107 339 LSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARK 418 (660)
T ss_pred HHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHH
Confidence 111111111111111111110 000001123456777887788888999999
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHH-HHHHHHHHhcCChHHHHHHHHHHHHC
Q 008105 454 LYGQMMENG-ISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAY-RLVIHGLCKSKKVDMAIQVLELMISS 531 (577)
Q Consensus 454 ~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~ 531 (577)
+|-+..+.| +.++...+++++..++ .|+..-|..+|+--... -||...| ...+.-+.+-++-+.|..+|+..+.
T Consensus 419 ~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~- 494 (660)
T COG5107 419 LFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVE- 494 (660)
T ss_pred HHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH-
Confidence 999999988 6788999999998766 57888999999875543 2343333 4566677888999999999997765
Q ss_pred CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105 532 RYKPD--DTVFSTIVKKVADDGMTEEAYKLWQKLIEW 566 (577)
Q Consensus 532 ~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (577)
.+..+ ..+|..+++--..-|+...+..+=+++.+.
T Consensus 495 r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 495 RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 22333 678999999889999998888887777663
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.58 E-value=0.12 Score=43.41 Aligned_cols=59 Identities=17% Similarity=0.284 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 008105 190 YNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQL 249 (577)
Q Consensus 190 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 249 (577)
...++..+...|++++|..+.+.+.... +-|...|..++.+|...|+..+|.+.|+++.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3445555556666666666666665543 4455566666666666666666666666543
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.47 E-value=0.011 Score=42.63 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=26.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008105 476 GFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMI 529 (577)
Q Consensus 476 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 529 (577)
.|.+.+++++|.+.++.+...+.. +...|.....++.+.|++++|.+.+++..
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344555555555555555544321 33444444555555555555555555555
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.47 E-value=0.85 Score=44.24 Aligned_cols=31 Identities=13% Similarity=0.019 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008105 501 RNSAYRLVIHGLCKSKKVDMAIQVLELMISS 531 (577)
Q Consensus 501 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 531 (577)
+-..+.+++.++.-.|++++|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4445577888888899999999999998864
No 213
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.46 E-value=0.038 Score=52.58 Aligned_cols=132 Identities=14% Similarity=0.048 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCC-CccHH
Q 008105 434 TYNTLIDGLAKKGCMEKAMVLYGQMM----ENGIS-PDDITHRTLIWGFCRADQVEEAVDLLKEIGK----RGN-KMRNS 503 (577)
Q Consensus 434 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~~~~~ 503 (577)
.|..|...|.-.|+++.|+...+.-. +.|-+ .....+..+..++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34555555556677777766554422 22211 1234566677777777788887777766432 221 11223
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105 504 AYRLVIHGLCKSKKVDMAIQVLELMIS----S-RYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIE 565 (577)
Q Consensus 504 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (577)
+...+...|.-..++++|+.++.+-+. . ...-....+.+|..++...|..++|..+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 334466666666777777777765432 1 1223456677788888888888887777666554
No 214
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=1.8 Score=45.65 Aligned_cols=121 Identities=12% Similarity=0.062 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105 117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPD--FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV 194 (577)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 194 (577)
+.....-+..+++...++-|+.+...- +..++ .........-+.+.|++++|...+-+.+..- .| ..+|
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi 404 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVI 404 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHH
Confidence 344566788888888889888877542 22221 1223334455567889999888777665321 22 2345
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 008105 195 GGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKD 247 (577)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 247 (577)
.-|....++.+-..+++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+.
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 556666667777777778877774 3444556778888888877776655544
No 215
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.32 E-value=1.1 Score=43.55 Aligned_cols=95 Identities=18% Similarity=0.172 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008105 156 INLIRGLIRIDRIEKASKVLQIMVMSG---GVPDTITYNMMVGGLCK---RGQIRSAIALLDEMSVSGCEPDVITYNTIL 229 (577)
Q Consensus 156 ~~li~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 229 (577)
..++-+|....+++..+++.+.+.... +......-....-++-+ .|+.++|++++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344556777777888888888776541 11122222233444455 777888888877755444467777777776
Q ss_pred HHHHh---------CCChHHHHHHHHHHHH
Q 008105 230 RTMFD---------NGKFKQAIGFWKDQLR 250 (577)
Q Consensus 230 ~~~~~---------~~~~~~A~~~~~~~~~ 250 (577)
+.|-. ...+++|+..|.+.-+
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 66532 1235566666665443
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.31 E-value=0.029 Score=40.42 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=25.7
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008105 126 NFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMS 181 (577)
Q Consensus 126 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 181 (577)
.|.+.+++++|.+.+++++..++ .+...+......+.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44445555555555555544422 24444444444444445555555444444443
No 217
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.29 E-value=1.1 Score=42.91 Aligned_cols=109 Identities=15% Similarity=0.043 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008105 400 YNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCR 479 (577)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 479 (577)
.+..+.-+...|+...|.++-.+.. -|+...|-..+.+++..++|++-..+... +-.+.-|...+.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3344555556666666666655442 45666777777777777777665554322 1234566777777777
Q ss_pred cCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008105 480 ADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELM 528 (577)
Q Consensus 480 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 528 (577)
.|+..+|..+..++ + +..-+..|.+.|++.+|.+..-+.
T Consensus 250 ~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 77777777666552 1 123455667777777776654433
No 218
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.21 E-value=1.7 Score=44.18 Aligned_cols=410 Identities=11% Similarity=0.034 Sum_probs=217.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105 117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHF-CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG 195 (577)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 195 (577)
-..|+.||.---.....+.+...++.++.. .|...- |......=.+.|..+.+.++|++.+.. ++.+...|.....
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 345667776665666667778888888764 344443 333444445779999999999998864 5667777777665
Q ss_pred HHH-hcCChHHHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---H
Q 008105 196 GLC-KRGQIRSAIALLDEMSVS-GCE-PDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVC---K 269 (577)
Q Consensus 196 ~~~-~~g~~~~A~~~~~~~~~~-g~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~ 269 (577)
.++ ..|+.+.....|+..... |.. .....|...|..-..++++.....++++.++. ....++....-|. +
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHh
Confidence 554 467888888889888754 321 34567888888888889999999999998864 2233333332222 1
Q ss_pred c------CCHHHHHHHHHHHHHc---C-CCCCHhhHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105 270 Q------CGIARAIEVLDDMAIE---G-CSPDIVTYNSLVNFSCKQ-GKYDDAVLVINNLLSRGMEPNSITYNTLLHSLG 338 (577)
Q Consensus 270 ~------g~~~~A~~~~~~~~~~---~-~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 338 (577)
. ...+++.++-.....+ . ..+....+..-+.--... +..+++.....+.. ...-.++-
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~ 266 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQ 266 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHH
Confidence 1 1223333222222210 0 000001111111000000 00111111110000 00111122
Q ss_pred ccCCHHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008105 339 SRGCWDAVDKILDIMNEAS-------HSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEG 411 (577)
Q Consensus 339 ~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 411 (577)
...........|+.-..+- .+++..+|..-+..-.+.|+.+.+.-+|++..-- +..-...|-..+.-....|
T Consensus 267 ~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~ 345 (577)
T KOG1258|consen 267 KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSG 345 (577)
T ss_pred hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcC
Confidence 2222333333333333221 1235567777777777888888888888776532 1222333444444444457
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH--
Q 008105 412 MLNEALQLLHLLNGSSCSPCLITYNTLIDGLA-KKGCMEKAMVLYGQMMENGISPDDI-THRTLIWGFCRADQVEEAV-- 487 (577)
Q Consensus 412 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~-- 487 (577)
+.+-|..++....+-.++ +......+-..+. ..|++..|..+++.....- |+.. .-..-+....+.|+.+.+.
T Consensus 346 ~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~ 422 (577)
T KOG1258|consen 346 DVSLANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYK 422 (577)
T ss_pred chhHHHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHH
Confidence 777777777665554422 2222222222333 4568888888888887652 4432 2222234445667777766
Q ss_pred -HHHHHHhhCCCCccHHHHHHHHHH-----HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008105 488 -DLLKEIGKRGNKMRNSAYRLVIHG-----LCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDG 551 (577)
Q Consensus 488 -~~~~~m~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 551 (577)
+++....... -+......+.-- +.-.++.+.|..++.++.+ -.+++...|..+++.+...+
T Consensus 423 ~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~-~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 423 NELYSSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARIILLEAND-ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh-cCCccHHHHHHHHHHHHhCC
Confidence 3333333211 121222222111 2336778888888888876 34666777777777665555
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.21 E-value=0.018 Score=42.25 Aligned_cols=61 Identities=21% Similarity=0.242 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105 504 AYRLVIHGLCKSKKVDMAIQVLELMISS--RYK---PD-DTVFSTIVKKVADDGMTEEAYKLWQKLI 564 (577)
Q Consensus 504 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 564 (577)
+|+.+...|...|++++|+..+++.++. ... |+ ..++..+...+...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455555555555555555544431 011 11 2334445555555555555555555544
No 220
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.15 E-value=0.036 Score=46.55 Aligned_cols=67 Identities=22% Similarity=0.318 Sum_probs=46.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh-----hCCCCCCHHHH
Q 008105 158 LIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMS-----VSGCEPDVITY 225 (577)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~g~~~~~~~~ 225 (577)
++..+...|++++|.++.+.+.... +-|...|..+|.+|...|+..+|.+.|+++. +.|+.|+..+-
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4555667888888988888888876 5577888888999999999999988888775 33777766553
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.11 E-value=0.028 Score=41.16 Aligned_cols=61 Identities=10% Similarity=0.102 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh----CCC-Ccc-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008105 469 THRTLIWGFCRADQVEEAVDLLKEIGK----RGN-KMR-NSAYRLVIHGLCKSKKVDMAIQVLELMI 529 (577)
Q Consensus 469 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 529 (577)
+++.+...|...|++++|++.|++..+ .|. .|+ ..++..+..++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555566666666666666655543 111 111 3455666666666777777776666654
No 222
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.06 E-value=1.6 Score=42.65 Aligned_cols=188 Identities=14% Similarity=0.112 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH
Q 008105 115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQI----PDFHFCINLIRGLIRIDRIEKASKVLQIMVMS---GGVPDT 187 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g~~~~~ 187 (577)
+|-..=+..+.++...|++.+++.+++++..+-.+ -+..+|+.++-.+.+ ..|-++.+. .+-||
T Consensus 126 ~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr--------SYfLEl~e~~s~dl~pd- 196 (549)
T PF07079_consen 126 SDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR--------SYFLELKESMSSDLYPD- 196 (549)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH--------HHHHHHHHhcccccChH-
Confidence 34445577788899999999999999888766433 577778776555543 334444322 22222
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC--CChHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 008105 188 ITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDN--GKFKQAIGFWKDQLRKGCPPYLI-TYTILI 264 (577)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~ 264 (577)
|--++-.|.+.=. .++.-.-..+.|.......++....-. .+..--.++++.....-+.|+-. ....|.
T Consensus 197 --yYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~ 268 (549)
T PF07079_consen 197 --YYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLK 268 (549)
T ss_pred --HHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHH
Confidence 3445555543211 111111011123333333343333221 11222222222222333444432 333344
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCC----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105 265 EQVCKQCGIARAIEVLDDMAIEGC----SPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSR 321 (577)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 321 (577)
..+.+ +.+++..+-+.+....+ +.=+.++..++....+.++...|.+.+.-+...
T Consensus 269 ~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 269 QQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 44433 44444444433332211 112357788888888999999998888777655
No 223
>PRK15331 chaperone protein SicA; Provisional
Probab=96.02 E-value=0.18 Score=42.25 Aligned_cols=86 Identities=9% Similarity=-0.068 Sum_probs=40.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 008105 163 IRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAI 242 (577)
Q Consensus 163 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~ 242 (577)
...|++++|..+|.-+...+ .-+..-|..|..++-..+++++|...|......+ .-|+...-....++...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 34555555555555554433 2233344444444444555555555554443332 223333334444555555555555
Q ss_pred HHHHHHHH
Q 008105 243 GFWKDQLR 250 (577)
Q Consensus 243 ~~~~~~~~ 250 (577)
..|.....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55554443
No 224
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.94 E-value=1.6 Score=41.72 Aligned_cols=294 Identities=13% Similarity=0.061 Sum_probs=179.7
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH--HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008105 190 YNMMVGGLC--KRGQIRSAIALLDEMSVSGCEPDVITYNTILRTM--FDNGKFKQAIGFWKDQLRKGCPPYLITYTILIE 265 (577)
Q Consensus 190 ~~~li~~~~--~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 265 (577)
|.+|-.++. -.|+-..|.++-.+..+. +..|......++.+- .-.|+++.|.+-|+.|...- .....-...|.-
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyl 162 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYL 162 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHH
Confidence 444444443 357777787777665422 134544444555443 34799999999999997531 111112233333
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHH--HHHHHHHHHH---c
Q 008105 266 QVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRG-MEPNSI--TYNTLLHSLG---S 339 (577)
Q Consensus 266 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~---~ 339 (577)
..-+.|..+.|.+.-++.-... +.-...+...+...|..|+++.|+++++.-.... +.++.. .-..|+.+-. -
T Consensus 163 eAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 4457788888888888776552 2234677888899999999999999998766542 344432 2223332221 1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 008105 340 RGCWDAVDKILDIMNEASHSPTVFTY-NILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQ 418 (577)
Q Consensus 340 ~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 418 (577)
..+...|...-.+..+. .|+..-- -.-..++.+.|+..++-.+++.+-+.. |.+..+... .+.+.|+. +..
T Consensus 242 dadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY--~~ar~gdt--a~d 313 (531)
T COG3898 242 DADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLY--VRARSGDT--ALD 313 (531)
T ss_pred cCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHH--HHhcCCCc--HHH
Confidence 23455565555554443 3444322 223467888999999999999998874 444443332 23455543 222
Q ss_pred HHHHH---hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHh
Q 008105 419 LLHLL---NGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCR-ADQVEEAVDLLKEIG 494 (577)
Q Consensus 419 ~~~~~---~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~ 494 (577)
-++.. .... +.+..+...+..+-...|++..|..--+...+ ..|....|..|.+.-.. .|+-.++...+.+..
T Consensus 314 RlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 314 RLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 22222 2111 33566777777888888999888877776665 35888888888776554 499999999888887
Q ss_pred hCC
Q 008105 495 KRG 497 (577)
Q Consensus 495 ~~~ 497 (577)
+..
T Consensus 391 ~AP 393 (531)
T COG3898 391 KAP 393 (531)
T ss_pred cCC
Confidence 753
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.92 E-value=0.18 Score=49.54 Aligned_cols=67 Identities=13% Similarity=0.046 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008105 114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDF---HFCINLIRGLIRIDRIEKASKVLQIMVMS 181 (577)
Q Consensus 114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 181 (577)
+.+...|+.+..+|.+.|++++|+..|++.++.++. +. .+|..+..+|.+.|++++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999987433 22 45899999999999999999999999875
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=2.7 Score=43.79 Aligned_cols=325 Identities=15% Similarity=0.093 Sum_probs=186.6
Q ss_pred hCCCCCCHHHHHH-----HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcC
Q 008105 215 VSGCEPDVITYNT-----ILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCG--IARAIEVLDDMAIEG 287 (577)
Q Consensus 215 ~~g~~~~~~~~~~-----li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~ 287 (577)
..|++.+..-|.. +|.-+...+.+..|+++-+.+...-.. +...|......+.+..+ -+++.+.+++=...-
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4577777776654 567778889999999988776432111 24566666666665533 233333333322221
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-------
Q 008105 288 CSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGME----PNSITYNTLLHSLGSRGCWDAVDKILDIMNEA------- 356 (577)
Q Consensus 288 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------- 356 (577)
. -+..+|..+..-...+|+.+-|..+++.=...+.. .+..-+...+.-+...|+.+-...++-.+...
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~ 582 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF 582 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 2 34567888888889999999999887654433211 12223444555566777777766666555432
Q ss_pred ----CCCCCHHHHHHHHH--------HHHHcCCHHHHHHHHH--HHHHCC-CCCCHHHHHHHHHHHHhcCChh---H---
Q 008105 357 ----SHSPTVFTYNILIN--------GLCKYGLVDRAINSFN--QMVSKN-CQPDIVTYNTVLGALCKEGMLN---E--- 415 (577)
Q Consensus 357 ----~~~~~~~~~~~li~--------~~~~~g~~~~A~~~~~--~m~~~~-~~~~~~~~~~li~~~~~~g~~~---~--- 415 (577)
..+.....|.-++. .+.+.++-..+...|. ...... +.+-.........++.+..... +
T Consensus 583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 11112222222221 1111122222222211 100000 1111222233344444443311 1
Q ss_pred ----HHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008105 416 ----ALQLLHLLNG-SSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLL 490 (577)
Q Consensus 416 ----A~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 490 (577)
-+++.+.+.. .+..-..-+.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-.++-
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 1122222221 1222333455666777788899999988877765 488888988899999999999887776
Q ss_pred HHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008105 491 KEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLW 560 (577)
Q Consensus 491 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 560 (577)
+.+.. +.-|.-.+.+|.+.|+.++|.+++-+.- | .+ -...+|.+.|++.+|.++.
T Consensus 739 kskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~--~-l~------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 739 KSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVG--G-LQ------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hccCC------CCCchhHHHHHHhcccHHHHhhhhhccC--C-hH------HHHHHHHHhccHHHHHHHH
Confidence 65542 3456668889999999999999998763 2 11 5667888999998887654
No 227
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.85 E-value=0.18 Score=40.79 Aligned_cols=53 Identities=4% Similarity=0.020 Sum_probs=40.0
Q ss_pred CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh
Q 008105 497 GNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS-SRYKPDDTVFSTIVKKVAD 549 (577)
Q Consensus 497 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~ 549 (577)
...|+..+..+++.+|+..|++..|.++++...+ .+++-+..+|..|+.-...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4567788888888888888888888888888765 4677778888887764433
No 228
>PRK15331 chaperone protein SicA; Provisional
Probab=95.85 E-value=0.27 Score=41.20 Aligned_cols=95 Identities=9% Similarity=0.028 Sum_probs=77.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008105 120 NNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCK 199 (577)
Q Consensus 120 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 199 (577)
.-...-.+...|++++|..+|.-+...++. |..-|..|..++-..+++++|...|......+ .-|+..+-.....|..
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHH
Confidence 345566778899999999999998886544 66677778888888899999999999887665 3455556667888999
Q ss_pred cCChHHHHHHHHHHhhC
Q 008105 200 RGQIRSAIALLDEMSVS 216 (577)
Q Consensus 200 ~g~~~~A~~~~~~~~~~ 216 (577)
.|+.+.|...|+.....
T Consensus 118 l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 118 MRKAAKARQCFELVNER 134 (165)
T ss_pred hCCHHHHHHHHHHHHhC
Confidence 99999999999998863
No 229
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.62 E-value=0.87 Score=36.39 Aligned_cols=138 Identities=14% Similarity=0.129 Sum_probs=75.4
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008105 410 EGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDL 489 (577)
Q Consensus 410 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 489 (577)
.|..++..++..+...+. +..-+|-+|--....-+-+-..++++..-+. -|. ..+|++......
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi~C 78 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVIEC 78 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHHHH
T ss_pred hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHHHH
Confidence 456666666666555432 3444444444333333333333333333221 111 123444444333
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008105 490 LKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVF 569 (577)
Q Consensus 490 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (577)
+-.+ ..+.......++.+...|+-+.-.++..++.+ +-.+++...-.+..+|.+.|+..++.+++.+.-++|++
T Consensus 79 ~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 79 YAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3222 12455667778888899999998888888875 34788999999999999999999999999998888764
No 230
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.24 Score=47.56 Aligned_cols=139 Identities=14% Similarity=0.030 Sum_probs=80.7
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008105 124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI 203 (577)
Q Consensus 124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 203 (577)
.+.|.+.|++..|...|++++..- . +.+.-+.++..... ..-...++.+.-+|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l-~------------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFL-E------------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHh-h------------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhhH
Confidence 357788888888888888866430 0 00111111111111 11234556666677777777
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHH
Q 008105 204 RSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGI-ARAIEVLDD 282 (577)
Q Consensus 204 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 282 (577)
..|++..++....+ ++|+...-.-..++...|+++.|+..|+++++.. |-|...-+.|+....+.... +...++|..
T Consensus 274 ~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 274 KEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777665 5667776667777777777777777777777642 33333334444433333332 334566776
Q ss_pred HHH
Q 008105 283 MAI 285 (577)
Q Consensus 283 ~~~ 285 (577)
|..
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 654
No 231
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.53 E-value=0.23 Score=40.12 Aligned_cols=51 Identities=20% Similarity=0.105 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHH
Q 008105 182 GGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVS-GCEPDVITYNTILRTM 232 (577)
Q Consensus 182 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~ 232 (577)
...|+..+..+++.+|+..|++..|.++.+...+. +++-+...|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34566677777777777777777777777666543 5555666666666544
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.49 E-value=0.38 Score=48.34 Aligned_cols=158 Identities=12% Similarity=0.098 Sum_probs=101.0
Q ss_pred HHHHHhcCChhhHHHHHH--HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008105 124 LQNFCSRGKLTDASKLID--IMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRG 201 (577)
Q Consensus 124 i~~~~~~g~~~~A~~l~~--~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 201 (577)
.+...-+++++++.++.+ ++... . +....+.+++.+-+.|..+.|+++-.+-. .-.+...+.|
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~--i-~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg 332 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPN--I-PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLG 332 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT
T ss_pred HHHHHHcCChhhhhhhhhhhhhccc--C-ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcC
Confidence 345566788888777665 22211 1 24457778888888899998888754322 2345567889
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008105 202 QIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLD 281 (577)
Q Consensus 202 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 281 (577)
+++.|.++.++. .+...|..|.....++|+++-|.+.|.+.. -+..|+-.|.-.|+.+.-.++.+
T Consensus 333 ~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 333 NLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp -HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred CHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHH
Confidence 998888765443 367789999999999999999998887743 35566667788888888777777
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008105 282 DMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINN 317 (577)
Q Consensus 282 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 317 (577)
....+| -+|....++.-.|+.++..+++.+
T Consensus 398 ~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 398 IAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 776654 255556666667787777766654
No 233
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.38 E-value=0.61 Score=37.12 Aligned_cols=93 Identities=15% Similarity=-0.028 Sum_probs=70.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhc
Q 008105 124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTIT---YNMMVGGLCKR 200 (577)
Q Consensus 124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~---~~~li~~~~~~ 200 (577)
.-++...|+++.|++.|.+.+.. .+.....||.-..++.-+|+.++|+.=+++.++......... |-.-...|-..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 45678889999999999998876 345788899999999999999999988888877532333322 33334456678
Q ss_pred CChHHHHHHHHHHhhCC
Q 008105 201 GQIRSAIALLDEMSVSG 217 (577)
Q Consensus 201 g~~~~A~~~~~~~~~~g 217 (577)
|+-+.|..-|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 88888888888887766
No 234
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.32 E-value=4.7 Score=42.71 Aligned_cols=147 Identities=16% Similarity=0.145 Sum_probs=80.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105 155 CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV----GGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILR 230 (577)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 230 (577)
...-+..+.+..-++-|+.+-+.- ..|..+...+. +-+.+.|++++|...|-+-...- .| ..++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHH
Confidence 444566667777777777665543 22333333333 33446788888877776554321 22 22455
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH
Q 008105 231 TMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDD 310 (577)
Q Consensus 231 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 310 (577)
-|....+..+-..+++.+.+.|.. +...-..|+..|.+.++.+.-.+..+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 555666666666777777777643 44455667777888777776665554443 2211 1112344455555555555
Q ss_pred HHHHHH
Q 008105 311 AVLVIN 316 (577)
Q Consensus 311 A~~~~~ 316 (577)
|..+-.
T Consensus 482 a~~LA~ 487 (933)
T KOG2114|consen 482 AELLAT 487 (933)
T ss_pred HHHHHH
Confidence 544433
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=1.7 Score=40.16 Aligned_cols=147 Identities=13% Similarity=0.112 Sum_probs=78.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChH
Q 008105 160 RGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFK 239 (577)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~ 239 (577)
......|++.+|..+|....... +-+...--.++..|...|+.+.|..++..++..--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34456666677777666666554 22344455566677777777777777776654321112222222334444444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCCHH
Q 008105 240 QAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEG-CSPDIVTYNSLVNFSCKQGKYD 309 (577)
Q Consensus 240 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~ 309 (577)
+...+-.+.-.. |-|...-..+...+...|+.+.|.+.+-.+.+++ -.-|...-..++..+.-.|.-+
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 444433333321 3355556666667777777777777666665532 1224455566666666666433
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.25 E-value=0.35 Score=47.63 Aligned_cols=66 Identities=15% Similarity=0.107 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105 429 SPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDD----ITHRTLIWGFCRADQVEEAVDLLKEIGKR 496 (577)
Q Consensus 429 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 496 (577)
+.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445667777777888888888888888887764 3553 34777777888888888888888777764
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=2.5 Score=39.08 Aligned_cols=143 Identities=14% Similarity=0.100 Sum_probs=73.3
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008105 197 LCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARA 276 (577)
Q Consensus 197 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 276 (577)
....|++.+|..+|+...... +-+...--.++.+|...|+.+.|..++..+...--.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 445666677777666666543 2334455566667777777777777766654332111122222233344444444433
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHccCC
Q 008105 277 IEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGM-EPNSITYNTLLHSLGSRGC 342 (577)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~ 342 (577)
.++-.+.-.. +-|...-..+...+...|+.++|.+.+-.+.+... .-|...-..++..+.-.|.
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 3333333322 22455555566666677777777665555544311 1234445555555555553
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.21 E-value=0.33 Score=44.24 Aligned_cols=87 Identities=15% Similarity=0.061 Sum_probs=37.2
Q ss_pred hcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCcc-HHHHHHHHHHHHhcCChH
Q 008105 444 KKGCMEKAMVLYGQMMENGI--SPDDITHRTLIWGFCRADQVEEAVDLLKEIGKR-GNKMR-NSAYRLVIHGLCKSKKVD 519 (577)
Q Consensus 444 ~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~-~~~~~~li~~~~~~g~~~ 519 (577)
+.|++..|...|...++..- .-....+-.|..++...|++++|...|..+.+. +-.|. +..+--+.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 33445555555555554320 001122333444555555555555555544431 11111 233344444444555555
Q ss_pred HHHHHHHHHHH
Q 008105 520 MAIQVLELMIS 530 (577)
Q Consensus 520 ~A~~~~~~m~~ 530 (577)
+|...|++..+
T Consensus 233 ~A~atl~qv~k 243 (262)
T COG1729 233 EACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 239
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.20 E-value=1.5 Score=36.31 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008105 121 NKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKR 200 (577)
Q Consensus 121 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 200 (577)
..++..+.+.+.+.....+++.+...+. .+...++.++..|++.++ .+..+.++. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 4556666666666666666666666552 455566666666665432 222333321 11222233344555555
Q ss_pred CChHHHHHHHHHH
Q 008105 201 GQIRSAIALLDEM 213 (577)
Q Consensus 201 g~~~~A~~~~~~~ 213 (577)
+.++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555444
No 240
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.52 Score=45.36 Aligned_cols=139 Identities=11% Similarity=0.028 Sum_probs=97.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCh
Q 008105 159 IRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKF 238 (577)
Q Consensus 159 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~ 238 (577)
.+.|.+.|++..|..-|+..+..= -|.+.-+.++..... ..-..+++.+..++.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l-------------~~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFL-------------EYRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHh-------------hccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhhH
Confidence 456889999999999998876420 011111222222221 22344677788899999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHHhcCCHHH-HHHHHH
Q 008105 239 KQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVT-YNSLVNFSCKQGKYDD-AVLVIN 316 (577)
Q Consensus 239 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~-A~~~~~ 316 (577)
.+|++.-.+.+..+ ++|....---..++...|+++.|+..|+.+.+. .|+... -+.++..-.+.....+ ..++|.
T Consensus 274 ~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 274 KEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998875 678887777788999999999999999999987 455444 4445555444444443 468888
Q ss_pred HHhhC
Q 008105 317 NLLSR 321 (577)
Q Consensus 317 ~m~~~ 321 (577)
.|...
T Consensus 351 ~mF~k 355 (397)
T KOG0543|consen 351 NMFAK 355 (397)
T ss_pred HHhhc
Confidence 88764
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.06 E-value=2 Score=43.87 Aligned_cols=118 Identities=14% Similarity=0.106 Sum_probs=67.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhhCCC---CccHHHHHHHHHHHHhcCChHH
Q 008105 445 KGCMEKAMVLYGQMMENGISPDDITHRTL-IWGFCRADQVEEAVDLLKEIGKRGN---KMRNSAYRLVIHGLCKSKKVDM 520 (577)
Q Consensus 445 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~ 520 (577)
..+.+.|.++++.+.+. -|+...|... .+.+...|++++|.+.|++...... +.....+--+...+.-.++|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34566777777777664 3555544332 3445566777777777776543110 1122334445556667777888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHHH
Q 008105 521 AIQVLELMISSRYKPDDTVFSTIVK-KVADDGMT-------EEAYKLWQKLIE 565 (577)
Q Consensus 521 A~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~g~~-------~~A~~~~~~~~~ 565 (577)
|.+.|.++.+.. .-+..+|..+.. ++...|+. ++|.+++.+...
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 887777777532 223444443333 34556666 677777766654
No 242
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.06 E-value=0.43 Score=43.38 Aligned_cols=105 Identities=17% Similarity=0.136 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHH
Q 008105 429 SPCLITYNTLIDGLAK-----KGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNS 503 (577)
Q Consensus 429 ~p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 503 (577)
.-|..+|...+..+.. .+.++=....++.|.+.|+.-|..+|+.|+..+-+.. +.|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH
Confidence 3456677777776653 3456666667778888888888888888887654322 122221
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008105 504 AYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGM 552 (577)
Q Consensus 504 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 552 (577)
+....-.|-+ +-+-+++++++|..+|+-||.++-..|+.++.+.|-
T Consensus 128 -fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 -FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred -HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111211 234577888888888888888888888888877775
No 243
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.00 E-value=0.86 Score=45.88 Aligned_cols=130 Identities=14% Similarity=0.101 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008105 295 YNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCK 374 (577)
Q Consensus 295 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 374 (577)
.+.++..+-+.|..+.|+++..+-. .-.....+.|+++.|.++.++. .+...|..|.+...+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 4555555556666666655442211 1122334556666665543322 245566666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008105 375 YGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVL 454 (577)
Q Consensus 375 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 454 (577)
.|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+.....| -++....++.-.|+.++..++
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666665432 3444555555666655555555554443 133344444445555555555
Q ss_pred HHH
Q 008105 455 YGQ 457 (577)
Q Consensus 455 ~~~ 457 (577)
+.+
T Consensus 425 L~~ 427 (443)
T PF04053_consen 425 LIE 427 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.95 E-value=1.1 Score=36.80 Aligned_cols=84 Identities=13% Similarity=0.140 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105 117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIP--DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV 194 (577)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 194 (577)
+..+-.-.....+.|++++|.+.|+.+..+-+-. ...+-..++.+|.+.+++++|...+++.++..+.....-|-..+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3444445666778899999999999988873221 33445557888899999999999999998886554445566666
Q ss_pred HHHHhc
Q 008105 195 GGLCKR 200 (577)
Q Consensus 195 ~~~~~~ 200 (577)
.+++..
T Consensus 90 ~gL~~~ 95 (142)
T PF13512_consen 90 RGLSYY 95 (142)
T ss_pred HHHHHH
Confidence 665543
No 245
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.80 E-value=2.9 Score=37.55 Aligned_cols=222 Identities=16% Similarity=0.063 Sum_probs=113.5
Q ss_pred CCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008105 306 GKYDDAVLVINNLLSRGMEP-NSITYNTLLHSLGSRGCWDAVDKILDIMNEA-SHSPTVFTYNILINGLCKYGLVDRAIN 383 (577)
Q Consensus 306 g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 383 (577)
+....+...+.......... ....+......+...+.+..+...+...... ........+......+...+....+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 45555555555555442221 2345555566666666677666666665542 223344555555666666666667777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHhcCChhHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105 384 SFNQMVSKNCQPDIVTYNTVLG-ALCKEGMLNEALQLLHLLNGSSC--SPCLITYNTLIDGLAKKGCMEKAMVLYGQMME 460 (577)
Q Consensus 384 ~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 460 (577)
.+.........+ ......... .+...|+++.|...+........ ......+......+...++.+.+...+.+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 766666543222 111222222 55666666666666666644211 01223333333334555666666666666655
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105 461 NGISP-DDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 461 ~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 530 (577)
.. .. ....+..+...+...++.+.|...+......... ....+..+...+...+..+++...+.+...
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 32 12 2445555555666666666666666665553211 122333333333355556666666665553
No 246
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.64 E-value=3.8 Score=40.83 Aligned_cols=99 Identities=13% Similarity=0.126 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 008105 469 THRTLIWGFCRADQVEEAVDLLKEIGKRGN-KMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDD--TVFSTIVK 545 (577)
Q Consensus 469 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~ 545 (577)
.=..+..++-+.|+.++|.+.+++|.+... ..+......|+.++...+.+.++..++.+.-+.. .|.. ..|+..+-
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaALL 339 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAALL 339 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHHH
Confidence 334566666677888888888888765322 1233455667888888888888888887764322 2333 33444333
Q ss_pred HHHhcCC---------------HHHHHHHHHHHHHcCC
Q 008105 546 KVADDGM---------------TEEAYKLWQKLIEWKV 568 (577)
Q Consensus 546 ~~~~~g~---------------~~~A~~~~~~~~~~~~ 568 (577)
.....|+ -..|.+.+.+..+.|+
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP 377 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP 377 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC
Confidence 3333332 1235567777777665
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.60 E-value=2.7 Score=42.98 Aligned_cols=116 Identities=17% Similarity=0.132 Sum_probs=60.1
Q ss_pred CChhHHHHHHHHHhhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHH
Q 008105 411 GMLNEALQLLHLLNGSSCSPCLITYNTL-IDGLAKKGCMEKAMVLYGQMMENG---ISPDDITHRTLIWGFCRADQVEEA 486 (577)
Q Consensus 411 g~~~~A~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A 486 (577)
...+.|.++++.+.+. -|+...|... .+.+...|++++|.+.|++..... -......+--+...+.-.+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3556666666666654 3444444322 344455667777777777554211 011233444555556666777777
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHH-HHHhcCCh-------HHHHHHHHHHH
Q 008105 487 VDLLKEIGKRGNKMRNSAYRLVIH-GLCKSKKV-------DMAIQVLELMI 529 (577)
Q Consensus 487 ~~~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~-------~~A~~~~~~m~ 529 (577)
.+.|..+.+..- -...+|..+.. ++...|+. ++|.++|.+.-
T Consensus 325 ~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 325 AEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 777777766321 12233332222 22345555 66666666554
No 248
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.57 E-value=4.2 Score=38.36 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 008105 365 YNILINGLCKYGLVD---RAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGS 426 (577)
Q Consensus 365 ~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 426 (577)
...++.+|...+..+ +|..+++.+.... +-.+..+..-+..+.+.++.+++.+.+..|...
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344445555444432 3333333443321 222333334444444455555555555555543
No 249
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.49 E-value=0.35 Score=43.93 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHh
Q 008105 219 EPDVITYNTILRTMFD-----NGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIV 293 (577)
Q Consensus 219 ~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 293 (577)
+.|..+|-+.+..+.. .+.++-....++.|.+-|+..|..+|+.|+..+-+.. +.|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH
Confidence 4566667666666643 3455666666666777777777777777666443211 111111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHH
Q 008105 294 TYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCW-DAVDKILDIM 353 (577)
Q Consensus 294 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~ 353 (577)
+....-.|- .+-+=+++++++|...|+.||..+-..+++++.+.+.. .+..++.-.|
T Consensus 128 -fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 128 -FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred -HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 111111111 12234678899999999999999988999998877653 3333333333
No 250
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.47 E-value=2.1 Score=34.35 Aligned_cols=61 Identities=20% Similarity=0.165 Sum_probs=32.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 008105 331 NTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKN 392 (577)
Q Consensus 331 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 392 (577)
...+..+...|+-++..++...+.+. -.+++...-.+..+|.+.|+..++-+++.+.-+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 34455555666666666666665532 23555556666666666666666666666666655
No 251
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.39 E-value=2.5 Score=34.99 Aligned_cols=39 Identities=10% Similarity=0.134 Sum_probs=15.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008105 369 INGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALC 408 (577)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 408 (577)
+..+.+.+.......+++.+...+ ..+....+.++..|+
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~ 52 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYA 52 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHH
Confidence 333333344444444444444333 233333444444443
No 252
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.18 E-value=0.89 Score=41.49 Aligned_cols=97 Identities=14% Similarity=0.069 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHH
Q 008105 119 TNNKILQNFCSRGKLTDASKLIDIMARRNQI--PDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGV--PDTITYNMMV 194 (577)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li 194 (577)
.|+.-+..| +.|++..|...|...++..+. -....+.-|..++...|++++|..+|..+.+.-++ .-+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 566555444 556688888888888776322 12223444677777788888888877777765321 1234555566
Q ss_pred HHHHhcCChHHHHHHHHHHhhC
Q 008105 195 GGLCKRGQIRSAIALLDEMSVS 216 (577)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~~~~~ 216 (577)
....+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6666777777777777777665
No 253
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.16 E-value=1.2 Score=35.54 Aligned_cols=88 Identities=13% Similarity=0.042 Sum_probs=35.2
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCCHHH
Q 008105 199 KRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLI---TYTILIEQVCKQCGIAR 275 (577)
Q Consensus 199 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~ 275 (577)
..|+++.|++.|.+....- +.....||.-..++.-+|+.++|++-+++.++..-+.... +|..-...|-..|+.+.
T Consensus 55 E~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~ 133 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDA 133 (175)
T ss_pred hccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHH
Confidence 3444444444444433321 2234444444444444444444444444443321111111 11112223444555555
Q ss_pred HHHHHHHHHHcC
Q 008105 276 AIEVLDDMAIEG 287 (577)
Q Consensus 276 A~~~~~~~~~~~ 287 (577)
|..-|+...+.|
T Consensus 134 AR~DFe~AA~LG 145 (175)
T KOG4555|consen 134 ARADFEAAAQLG 145 (175)
T ss_pred HHHhHHHHHHhC
Confidence 555555554444
No 254
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.13 E-value=4.1 Score=36.53 Aligned_cols=205 Identities=12% Similarity=0.058 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGL 197 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 197 (577)
..|..-..+|....+++.|...+.+..+. ...|...|. ....+++|.-+.+++.+. .--+..|+-...+|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 45677778888888888888877776642 121222111 123345566666666543 22244566777788
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCC---HHHHHHHHHHHHHcCC
Q 008105 198 CKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKG--CPPY---LITYTILIEQVCKQCG 272 (577)
Q Consensus 198 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--~~~~---~~~~~~l~~~~~~~g~ 272 (577)
..+|.++.|-..+++.-+. .++-++++|+++|++...-- -..+ ...+...-..+.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 8888888887777765431 23445556666665543210 0001 1112223344555555
Q ss_pred HHHHHHHHHHHHHc----CCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHccCCHH
Q 008105 273 IARAIEVLDDMAIE----GCSPDI-VTYNSLVNFSCKQGKYDDAVLVINNLLSRG---MEPNSITYNTLLHSLGSRGCWD 344 (577)
Q Consensus 273 ~~~A~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~g~~~ 344 (577)
+++|-..|.+-... .-.++. ..|...|-.+.-..++..|...++.--+.+ -.-+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 55554444332211 001111 223344444555556666666666543321 112334555555554 345555
Q ss_pred HHHHH
Q 008105 345 AVDKI 349 (577)
Q Consensus 345 ~a~~~ 349 (577)
++.++
T Consensus 245 ~~~kv 249 (308)
T KOG1585|consen 245 EIKKV 249 (308)
T ss_pred HHHHH
Confidence 55444
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=1.7 Score=40.79 Aligned_cols=162 Identities=12% Similarity=0.036 Sum_probs=109.3
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCChh
Q 008105 339 SRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTY----NTVLGALCKEGMLN 414 (577)
Q Consensus 339 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~----~~li~~~~~~g~~~ 414 (577)
..|++.+|-..++++.+. .|.|...++..=++|.-.|+.+.-...++++... ..+|...| ....-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 467788888888888765 5668888888888999999999888888888765 23344333 33344556789999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008105 415 EALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMEN---GISPDDITHRTLIWGFCRADQVEEAVDLLK 491 (577)
Q Consensus 415 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 491 (577)
+|++.-++..+.+ +-|...-.++...+-..|+..++.++..+-.+. +--.-...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999988888776 566777777888888889999998876654321 100001112223334556688999999997
Q ss_pred H-HhhCCCCccHH
Q 008105 492 E-IGKRGNKMRNS 503 (577)
Q Consensus 492 ~-m~~~~~~~~~~ 503 (577)
. |.+.-.+.|..
T Consensus 272 ~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 272 REIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHhhccchh
Confidence 6 44433344443
No 256
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.97 E-value=4.7 Score=36.62 Aligned_cols=80 Identities=11% Similarity=0.084 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105 119 TNNKILQNFCSRGKLTDASKLIDIMARRNQI--PDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGG 196 (577)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 196 (577)
.+-.-+..-.+.|++++|.+.|+.+..+.+- -...+...++.++-+.++++.|+...++..+..+......|-..|.+
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 3334455556789999999999988876422 12334444566777888888888888888776544444556666666
Q ss_pred HH
Q 008105 197 LC 198 (577)
Q Consensus 197 ~~ 198 (577)
++
T Consensus 116 Ls 117 (254)
T COG4105 116 LS 117 (254)
T ss_pred HH
Confidence 55
No 257
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.89 E-value=2.2 Score=35.04 Aligned_cols=53 Identities=17% Similarity=0.279 Sum_probs=24.9
Q ss_pred hcCChHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 008105 199 KRGQIRSAIALLDEMSVSGC--EPDVITYNTILRTMFDNGKFKQAIGFWKDQLRK 251 (577)
Q Consensus 199 ~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 251 (577)
+.|++++|.+.|+.+..+-- +-...+--.++.+|.+.+++++|...+++.++.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44555555555555543310 112233334455555555555555555555544
No 258
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.81 E-value=13 Score=41.23 Aligned_cols=105 Identities=16% Similarity=0.170 Sum_probs=53.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHc
Q 008105 298 LVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFT--YNILINGLCKY 375 (577)
Q Consensus 298 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~ 375 (577)
....+...+.+++|.-.|+..-+. .-.+.+|..+|+|.+|..+..++... .+... -..|+.-+...
T Consensus 945 ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 945 YADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHc
Confidence 333344455555555444433211 22345566666777766666655432 12211 24555566666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008105 376 GLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHL 422 (577)
Q Consensus 376 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 422 (577)
+++-+|-++..+.... ....+..+++...+++|.++-..
T Consensus 1013 ~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred ccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 6666666666655432 12233445555566666655443
No 259
>PRK11906 transcriptional regulator; Provisional
Probab=93.65 E-value=5.6 Score=39.56 Aligned_cols=147 Identities=14% Similarity=0.069 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHh---------cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008105 378 VDRAINSFNQMVSK-NCQPD-IVTYNTVLGALCK---------EGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKG 446 (577)
Q Consensus 378 ~~~A~~~~~~m~~~-~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 446 (577)
.+.|+.+|.+.... ...|+ ...|..+..++.. .....+|.++-+...+.+ +-|......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 45667777777622 12232 3334333333221 223456666666676666 567777777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCccHHHHHHHHHHHHhcCChHHHHHH
Q 008105 447 CMEKAMVLYGQMMENGISPD-DITHRTLIWGFCRADQVEEAVDLLKEIGKRG-NKMRNSAYRLVIHGLCKSKKVDMAIQV 524 (577)
Q Consensus 447 ~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~ 524 (577)
+++.|...|++.... .|| ...|........-+|+.++|.+.+++..+.. .+.-.......++.|+.. ..++|+++
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 788888888888774 354 4456666666667888888888888866532 122233344455566655 46777776
Q ss_pred HHHH
Q 008105 525 LELM 528 (577)
Q Consensus 525 ~~~m 528 (577)
+-+-
T Consensus 430 ~~~~ 433 (458)
T PRK11906 430 YYKE 433 (458)
T ss_pred Hhhc
Confidence 6543
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.62 E-value=6.6 Score=37.08 Aligned_cols=185 Identities=15% Similarity=0.077 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHHC--------CCCCCH-----HHHHHHHHHHHhcCChh---HHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105 377 LVDRAINSFNQMVSK--------NCQPDI-----VTYNTVLGALCKEGMLN---EALQLLHLLNGSSCSPCLITYNTLID 440 (577)
Q Consensus 377 ~~~~A~~~~~~m~~~--------~~~~~~-----~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~li~ 440 (577)
+++.|...+++..+. ...|+. .+...++.+|...+..+ +|..+++.+.... +....++..-+.
T Consensus 51 ~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~ 129 (278)
T PF08631_consen 51 KYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLE 129 (278)
T ss_pred ChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHH
Confidence 666666665554332 122332 45677778888777654 5666666665443 223555656677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHhhCCCCccHH-HHH-HHH---HHH
Q 008105 441 GLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGF---CRADQVEEAVDLLKEIGKRGNKMRNS-AYR-LVI---HGL 512 (577)
Q Consensus 441 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~-~li---~~~ 512 (577)
.+.+.++.+++.+.+.+|+..- .-....+..++..+ ... ....|...+..+....+.|... ... .++ ...
T Consensus 130 il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~ 207 (278)
T PF08631_consen 130 ILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLT 207 (278)
T ss_pred HHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 7777899999999999999752 21234455444444 333 3456666666665543444432 111 111 112
Q ss_pred HhcCC------hHHHHHHHHHHHH-CCCCCCHHHHH---HH----HHHHHhcCCHHHHHHHHHHHH
Q 008105 513 CKSKK------VDMAIQVLELMIS-SRYKPDDTVFS---TI----VKKVADDGMTEEAYKLWQKLI 564 (577)
Q Consensus 513 ~~~g~------~~~A~~~~~~m~~-~~~~p~~~~~~---~l----~~~~~~~g~~~~A~~~~~~~~ 564 (577)
.+.++ .+...++++...+ .+.+.+..+-. ++ +..+.+.+++++|.++++-..
T Consensus 208 ~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 208 TQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred cCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22222 4445455553332 23333433322 23 345678899999999988543
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.57 E-value=0.25 Score=31.29 Aligned_cols=28 Identities=11% Similarity=0.122 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 008105 119 TNNKILQNFCSRGKLTDASKLIDIMARR 146 (577)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~ 146 (577)
+|..+.+.|.+.|++++|+++|+++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665
No 262
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.07 E-value=2.9 Score=39.22 Aligned_cols=154 Identities=10% Similarity=0.058 Sum_probs=110.8
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH----HHHHHHHhcCCH
Q 008105 373 CKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYN----TLIDGLAKKGCM 448 (577)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~li~~~~~~g~~ 448 (577)
-..|+..+|-..++++++. .+.|..++...=.+|.-.|+.+.-...++.+...- .++...|. .+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467888888889998876 47788888888899999999999888888887652 44444433 334455689999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCccHHHHHHHHHHHHhcCChHHHHHHH
Q 008105 449 EKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKR---GNKMRNSAYRLVIHGLCKSKKVDMAIQVL 525 (577)
Q Consensus 449 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 525 (577)
++|++.-++..+.+ +-|...-.++...+-..|+..++.++..+-... +--.-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999887754 446677778888888899999999988765441 11111122222333455668999999999
Q ss_pred HHHH
Q 008105 526 ELMI 529 (577)
Q Consensus 526 ~~m~ 529 (577)
++-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 8654
No 263
>PRK11906 transcriptional regulator; Provisional
Probab=93.06 E-value=7.9 Score=38.55 Aligned_cols=145 Identities=14% Similarity=0.101 Sum_probs=96.6
Q ss_pred ChhHHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008105 412 MLNEALQLLHLLNGS-SCSPC-LITYNTLIDGLAK---------KGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRA 480 (577)
Q Consensus 412 ~~~~A~~~~~~~~~~-~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 480 (577)
..+.|..+|.+.... ...|+ ...|..+..++.. ..+..+|.++-++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 456788888888722 23443 3344444333322 234567788888888765 45777777888877888
Q ss_pred CCHHHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHH
Q 008105 481 DQVEEAVDLLKEIGKRGNKMR-NSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDD---TVFSTIVKKVADDGMTEEA 556 (577)
Q Consensus 481 g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A 556 (577)
|+++.|..+|++....+ || ..+|......+..+|+.++|.+.+++..+ ..|.. .+....++.|+..+ .++|
T Consensus 352 ~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhh
Confidence 88999999999998854 44 44566666667789999999999999774 34543 33333444565554 6777
Q ss_pred HHHHHH
Q 008105 557 YKLWQK 562 (577)
Q Consensus 557 ~~~~~~ 562 (577)
++++-+
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 776644
No 264
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.98 E-value=1.3 Score=41.06 Aligned_cols=77 Identities=17% Similarity=0.205 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 008105 189 TYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLR-----KGCPPYLITYTIL 263 (577)
Q Consensus 189 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~l 263 (577)
++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45556666666666666666666666554 44666666677777777776666666666544 3566666666555
Q ss_pred HHH
Q 008105 264 IEQ 266 (577)
Q Consensus 264 ~~~ 266 (577)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
No 265
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.94 E-value=15 Score=39.25 Aligned_cols=440 Identities=15% Similarity=0.145 Sum_probs=222.4
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHH-HcCCCC--ChhhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHH--
Q 008105 115 NDEKTNNKILQNFCSRGKLTDASKLIDIMA-RRNQIP--DFHFCINLIRGLI-RIDRIEKASKVLQIMVMSGGVPDTI-- 188 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~-~~~~~~--~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~g~~~~~~-- 188 (577)
.+...|..||. .|++.++.+. +..++| +..++..+...|. ...+++.|...+++.....-.++..
T Consensus 28 ~~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 45567777774 4666677666 333344 3445555677766 5678999999998876543232222
Q ss_pred ---HHHHHHHHHHhcCChHHHHHHHHHHhhCC----CCCCHHHHHHH-HHHHHhCCChHHHHHHHHHHHHCC---CCCCH
Q 008105 189 ---TYNMMVGGLCKRGQIRSAIALLDEMSVSG----CEPDVITYNTI-LRTMFDNGKFKQAIGFWKDQLRKG---CPPYL 257 (577)
Q Consensus 189 ---~~~~li~~~~~~g~~~~A~~~~~~~~~~g----~~~~~~~~~~l-i~~~~~~~~~~~A~~~~~~~~~~~---~~~~~ 257 (577)
....++..+.+.+... |...+++..+.- ..+-...+..+ +..+...+++..|.+.++.+...- ..|-.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 1234567777766665 888888766431 11222233333 223333478999999888876532 23444
Q ss_pred HHHHHHHHHHH--HcCCHHHHHHHHHHHHHcC---------CCCCHhhHHHHHHHH--HhcCCHHHHHHHHHHHhh----
Q 008105 258 ITYTILIEQVC--KQCGIARAIEVLDDMAIEG---------CSPDIVTYNSLVNFS--CKQGKYDDAVLVINNLLS---- 320 (577)
Q Consensus 258 ~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~---- 320 (577)
..+..++.+.. +.+..+++.+.++++.... ..|...+|..++..+ ...|+++.+...++++.+
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~ 257 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDE 257 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 44445554433 4455677777777664321 123456666666554 466776676666555432
Q ss_pred ---CC----------C--C-----------CCHHHH---------HHHHHH--HHccCCHHHHHHHHHH-------HH-h
Q 008105 321 ---RG----------M--E-----------PNSITY---------NTLLHS--LGSRGCWDAVDKILDI-------MN-E 355 (577)
Q Consensus 321 ---~g----------~--~-----------p~~~~~---------~~ll~~--~~~~g~~~~a~~~~~~-------~~-~ 355 (577)
.. + . +....| ..++.+ .+..+..+.+.+++++ .. .
T Consensus 258 ~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~ 337 (608)
T PF10345_consen 258 IKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIK 337 (608)
T ss_pred hhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhcc
Confidence 10 0 0 111111 112222 2233444455555443 33 1
Q ss_pred CCCCC--C------HHHHHHHHHH---------HHHcCCHHHHHHHHHHHHHCCC-CCC-----HHHHHHHHHH--HHhc
Q 008105 356 ASHSP--T------VFTYNILING---------LCKYGLVDRAINSFNQMVSKNC-QPD-----IVTYNTVLGA--LCKE 410 (577)
Q Consensus 356 ~~~~~--~------~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~~~-~~~-----~~~~~~li~~--~~~~ 410 (577)
....+ + ...|...+.. .+-.+++..|...++.+.+..- .|+ ...+...+.+ +-..
T Consensus 338 ~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~ 417 (608)
T PF10345_consen 338 SPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQST 417 (608)
T ss_pred CCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHc
Confidence 11111 1 1122222222 2236889899999998876421 111 2222223322 3456
Q ss_pred CChhHHHHHHH--------HHhhCCCCCCHHHHHHH--HHHHH--hcCCHHH--HHHHHHHHHHC-CCCC--CHHHHHHH
Q 008105 411 GMLNEALQLLH--------LLNGSSCSPCLITYNTL--IDGLA--KKGCMEK--AMVLYGQMMEN-GISP--DDITHRTL 473 (577)
Q Consensus 411 g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l--i~~~~--~~g~~~~--A~~~~~~m~~~-g~~p--~~~~~~~l 473 (577)
|+.+.|...|. .....+...+...+..+ +-.+. ......+ +.++++.+... .-.| +..++..+
T Consensus 418 g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~ 497 (608)
T PF10345_consen 418 GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCL 497 (608)
T ss_pred CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHH
Confidence 99999999997 44455544444444332 11112 2222333 66777766431 1122 23334443
Q ss_pred -HHHHHhcC--CHHHHHHHHHHHhh-C----CC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC--CHHHHH
Q 008105 474 -IWGFCRAD--QVEEAVDLLKEIGK-R----GN-KMRNSAYRLVIHGLCKSKKVDMAIQVLELMISS-RYKP--DDTVFS 541 (577)
Q Consensus 474 -i~~~~~~g--~~~~A~~~~~~m~~-~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p--~~~~~~ 541 (577)
+.++...- ...++...+.+..+ . +. ..-..+++.+...+. .|+..+..+........ ...| ....|.
T Consensus 498 ~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~ 576 (608)
T PF10345_consen 498 VLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWH 576 (608)
T ss_pred HHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 33333221 12344444443222 1 11 111222333333333 78888866666554321 1123 334452
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHHHHH
Q 008105 542 -----TIVKKVADDGMTEEAYKLWQKLIE 565 (577)
Q Consensus 542 -----~l~~~~~~~g~~~~A~~~~~~~~~ 565 (577)
.+.+.+...|+.++|.....+...
T Consensus 577 ~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 577 LVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 344558889999999998877654
No 266
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.87 E-value=0.4 Score=30.30 Aligned_cols=21 Identities=24% Similarity=0.143 Sum_probs=7.9
Q ss_pred HHHHHhcCChHHHHHHHHHHh
Q 008105 194 VGGLCKRGQIRSAIALLDEMS 214 (577)
Q Consensus 194 i~~~~~~g~~~~A~~~~~~~~ 214 (577)
...|...|++++|.++|++..
T Consensus 8 a~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333333333333333333333
No 267
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.77 E-value=5.4 Score=33.76 Aligned_cols=134 Identities=16% Similarity=0.148 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH-
Q 008105 397 IVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLI-TYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDI-THRTL- 473 (577)
Q Consensus 397 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l- 473 (577)
...|..-++ +.+.+..++|+.-|.++.+.|...-+. ...-........|+...|...|++.-...-.|-.. -...|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 334444333 355667777777777777765322111 11122233456777777777777776543223222 11111
Q ss_pred -HHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008105 474 -IWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISS 531 (577)
Q Consensus 474 -i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 531 (577)
...+...|.+++.....+-+...+.+.....-..|.-+-.+.|++.+|.+.|..+...
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1223456777777666666655444444445556666666777777777777776653
No 268
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.64 E-value=5.7 Score=33.65 Aligned_cols=124 Identities=10% Similarity=0.068 Sum_probs=60.1
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHH--HHHHHhcCC
Q 008105 127 FCSRGKLTDASKLIDIMARRNQIPDFH-FCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTIT-YNMM--VGGLCKRGQ 202 (577)
Q Consensus 127 ~~~~g~~~~A~~l~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~l--i~~~~~~g~ 202 (577)
+.+.++.++|+.-|..+.+.|...-+. ..........+.|+...|...|+++-.....|...- .-.| .-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 345666777777777777665432111 111122334556666667777766655433333221 1111 112334555
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 008105 203 IRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLR 250 (577)
Q Consensus 203 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 250 (577)
+++.....+-+...+-+-....-..|.-+-.+.|++..|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 655555555554333222233333444444555566666555555544
No 269
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.51 E-value=4.9 Score=38.25 Aligned_cols=128 Identities=12% Similarity=0.099 Sum_probs=68.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCCHHHHH-
Q 008105 262 ILIEQVCKQCGIARAIEVLDDMAIEG-----CSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLS----RGMEPNSITYN- 331 (577)
Q Consensus 262 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~- 331 (577)
++..++...+.++++++.|+...+.. ......++..|...|.+..++++|.-+..+..+ .++.-=..-|.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 35555666666777777777665421 111224566777777777777777655544432 12211111222
Q ss_pred ----HHHHHHHccCCHHHHHHHHHHHH----hCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008105 332 ----TLLHSLGSRGCWDAVDKILDIMN----EASHSP-TVFTYNILINGLCKYGLVDRAINSFNQMV 389 (577)
Q Consensus 332 ----~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 389 (577)
.|.-++...|.+..|.+..++.. +.|..+ -....-.+.+.|...|+.+.|..-|++..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 22334556666666666655543 333221 12233455677777788777777766544
No 270
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.32 E-value=8.6 Score=34.99 Aligned_cols=57 Identities=19% Similarity=0.164 Sum_probs=34.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105 508 VIHGLCKSKKVDMAIQVLELMISSRYKPDD---TVFSTIVKKVADDGMTEEAYKLWQKLIE 565 (577)
Q Consensus 508 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (577)
+.+-|.+.|.+-.|..-+++|++. .+-+. ..+-.+..+|.+.|..++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 455667777777777777777763 33233 3344455667777777777766554433
No 271
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.27 E-value=18 Score=38.56 Aligned_cols=88 Identities=10% Similarity=0.121 Sum_probs=37.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHH---
Q 008105 299 VNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEAS-HSPTVFTYNILINGLCK--- 374 (577)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~--- 374 (577)
...+.-.|+++.|.+.+-+ ..+...+.+.+...+..|.-..-.+... ..+.... -.|....+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445567888888877766 1222344555554444433222111111 2221111 01122557777777776
Q ss_pred cCCHHHHHHHHHHHHHC
Q 008105 375 YGLVDRAINSFNQMVSK 391 (577)
Q Consensus 375 ~g~~~~A~~~~~~m~~~ 391 (577)
..++.+|++.|--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 35677777777666543
No 272
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.24 E-value=8.1 Score=34.50 Aligned_cols=222 Identities=18% Similarity=0.102 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHccCCHHHHHH
Q 008105 271 CGIARAIEVLDDMAIEGCSP-DIVTYNSLVNFSCKQGKYDDAVLVINNLLSR-GMEPNSITYNTLLHSLGSRGCWDAVDK 348 (577)
Q Consensus 271 g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~ 348 (577)
+....+...+.......... ....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 45555555555555442111 2455666666677777777777777666542 123344455555566666666777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 008105 349 ILDIMNEASHSPTVFTYNILIN-GLCKYGLVDRAINSFNQMVSKNC--QPDIVTYNTVLGALCKEGMLNEALQLLHLLNG 425 (577)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 425 (577)
.+.........+ ......... .+...|+.+.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777766543322 122222222 56677777777777777654211 11233333334445566777777777776666
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105 426 SSCSP-CLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPD-DITHRTLIWGFCRADQVEEAVDLLKEIGKR 496 (577)
Q Consensus 426 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 496 (577)
.. +. ....+..+...+...++++.|...+....... |+ ...+..+...+...+..+++...+.+....
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 53 22 35566666667777777777777777776532 33 334444444444556677777777666653
No 273
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.23 E-value=11 Score=36.01 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=59.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHH---
Q 008105 403 VLGALCKEGMLNEALQLLHLLNGSS-----CSPCLITYNTLIDGLAKKGCMEKAMVLYGQMME----NGISPDDITH--- 470 (577)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~--- 470 (577)
+..++...+.++++++.|+...+.- .......+-.|...|.+..++++|.-+..+..+ .++..=..-|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4444555555666666665443311 111223455666666666666666655554432 1111111112
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHhh----CCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008105 471 --RTLIWGFCRADQVEEAVDLLKEIGK----RGNKM-RNSAYRLVIHGLCKSKKVDMAIQVLELMI 529 (577)
Q Consensus 471 --~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 529 (577)
..|.-++...|....|.+.-++..+ .|-.+ -.....++.+.|...|+.+.|..-++...
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2222344455555555555555433 22221 11223445555666666666666555554
No 274
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.07 E-value=16 Score=37.48 Aligned_cols=374 Identities=11% Similarity=0.043 Sum_probs=183.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHhC-CCC-CCHHHHHHHHH
Q 008105 119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLI-RIDRIEKASKVLQIMVMS-GGV-PDTITYNMMVG 195 (577)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~-g~~-~~~~~~~~li~ 195 (577)
.|.....-=.+-|..+.+.++|++.+.. ++-+...|...+..+. ..|+.+..+..|+..... |.. .....|...|.
T Consensus 81 yW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie 159 (577)
T KOG1258|consen 81 YWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIE 159 (577)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHH
Confidence 5666677778899999999999999884 6677778887776555 457888888999988765 322 34567888888
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH---hC------CChHHHHHHHHHHHHC---C-CCCCHHHHHH
Q 008105 196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMF---DN------GKFKQAIGFWKDQLRK---G-CPPYLITYTI 262 (577)
Q Consensus 196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~---~~------~~~~~A~~~~~~~~~~---~-~~~~~~~~~~ 262 (577)
--..++++.....+++++.+. ....++....-|. +. ...+++.++=...... . ..+.......
T Consensus 160 ~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~ 235 (577)
T KOG1258|consen 160 FENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEI 235 (577)
T ss_pred HHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHH
Confidence 888889999999999999853 2223333332222 11 1223333222222110 0 0001111111
Q ss_pred HHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC---CC----CCCHHHHHHHH
Q 008105 263 LIEQVCK-QCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSR---GM----EPNSITYNTLL 334 (577)
Q Consensus 263 l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~----~p~~~~~~~ll 334 (577)
-+..-.. .+..+++...+.+... .--..+.......+....++.-.+. .+ .++..+|..-+
T Consensus 236 ~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yL 304 (577)
T KOG1258|consen 236 GVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYL 304 (577)
T ss_pred HHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHh
Confidence 1110000 0111111111111110 0011122222222333333333222 11 12344666666
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCC
Q 008105 335 HSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQ--PDIVTYNTVLGALCKEGM 412 (577)
Q Consensus 335 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~ 412 (577)
..-.+.|+.+.+.-+|+...-- ...-...|-..+.-....|+.+-|..++....+-.++ |....+.+.+ .-..|+
T Consensus 305 df~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n 381 (577)
T KOG1258|consen 305 DFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGN 381 (577)
T ss_pred hhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhcc
Confidence 6666777777777777665431 0111223333444444446666666666555443322 2222222222 223467
Q ss_pred hhHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHH---HHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCH
Q 008105 413 LNEALQLLHLLNGSSCSPCLI-TYNTLIDGLAKKGCMEKAMV---LYGQMMENGISPDDITHRTLIWG-----FCRADQV 483 (577)
Q Consensus 413 ~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~---~~~~m~~~g~~p~~~~~~~li~~-----~~~~g~~ 483 (577)
+..|..+++.+...- |+.. .-..-+....+.|..+.+.. ++..... | .-+......+.-- +.-.++.
T Consensus 382 ~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~~~i~~d~ 457 (577)
T KOG1258|consen 382 FDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKFARLRYKIREDA 457 (577)
T ss_pred HHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHHHHHhcCH
Confidence 777777777776653 3322 22222334445666666652 2222221 1 1111111111111 2224667
Q ss_pred HHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcC
Q 008105 484 EEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSK 516 (577)
Q Consensus 484 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 516 (577)
+.|..++.++.+. .+++...|..+++.+...+
T Consensus 458 ~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 458 DLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 7777777777664 2445566666666555444
No 275
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.91 E-value=15 Score=36.88 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=37.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008105 226 NTILRTMFDNGKFKQAIGFWKDQLRKGCP-PYLITYTILIEQVCKQCGIARAIEVLDDMAI 285 (577)
Q Consensus 226 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 285 (577)
..+..++.+.|+.++|++.++++.+.... .+......|+..+...+.+.++..++.+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 44556666677777777777777654211 1334556677777777777777777766543
No 276
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.80 E-value=3.9 Score=34.28 Aligned_cols=63 Identities=21% Similarity=0.197 Sum_probs=42.6
Q ss_pred HHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhhCC
Q 008105 433 ITYNTLIDGL---AKKGCMEKAMVLYGQMMENGISPDDITHR-TLIWGFCRADQVEEAVDLLKEIGKRG 497 (577)
Q Consensus 433 ~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~ 497 (577)
.+.+.|+... .+.++.+++..+++.+.-. .|...... .-...+...|++.+|..+|+++....
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 3445555443 4678899999999998763 45533322 22344678899999999999987653
No 277
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.74 E-value=2.1 Score=39.73 Aligned_cols=82 Identities=15% Similarity=0.143 Sum_probs=66.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCCCCHHHHH
Q 008105 152 FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSV-----SGCEPDVITYN 226 (577)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~g~~~~~~~~~ 226 (577)
..++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.. .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3457778888888899999999999888876 55788899999999999999999988888764 58889888888
Q ss_pred HHHHHHHh
Q 008105 227 TILRTMFD 234 (577)
Q Consensus 227 ~li~~~~~ 234 (577)
.......+
T Consensus 232 ~y~~~~~~ 239 (280)
T COG3629 232 LYEEILRQ 239 (280)
T ss_pred HHHHHhcc
Confidence 77777433
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.43 E-value=0.19 Score=30.17 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105 540 FSTIVKKVADDGMTEEAYKLWQKLI 564 (577)
Q Consensus 540 ~~~l~~~~~~~g~~~~A~~~~~~~~ 564 (577)
|..|...|.+.|++++|++++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555555555555555533
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.42 E-value=0.43 Score=28.58 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHH
Q 008105 120 NNKILQNFCSRGKLTDASKLIDIMA 144 (577)
Q Consensus 120 ~~~li~~~~~~g~~~~A~~l~~~~~ 144 (577)
|+.|...|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5556666666666666666666633
No 280
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.42 E-value=13 Score=35.27 Aligned_cols=126 Identities=13% Similarity=0.183 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--CC----ChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCC---
Q 008105 205 SAIALLDEMSVSGCEPDVITYNTILRTMFD--NG----KFKQAIGFWKDQLRKGC---PPYLITYTILIEQVCKQCG--- 272 (577)
Q Consensus 205 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~--~~----~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~--- 272 (577)
+...+++.|.+.|+..+..+|-+....... .. ....|..+|+.|.+... .++...+..++.. ...+
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344556666666666665554442222211 11 23455666666665431 2334444444432 2222
Q ss_pred -HHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHhc-CC--HHHHHHHHHHHhhCCCCCCHHHHHH
Q 008105 273 -IARAIEVLDDMAIEGCSPDIV-TYNSLVNFSCKQ-GK--YDDAVLVINNLLSRGMEPNSITYNT 332 (577)
Q Consensus 273 -~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~-g~--~~~A~~~~~~m~~~g~~p~~~~~~~ 332 (577)
.+.+...|+.+...|+..+.. -+.+-+-++... .. ...+.++++.+.+.|+++....|..
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 234445555555555443321 111111111111 11 3345556666666666655554443
No 281
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.20 E-value=14 Score=35.12 Aligned_cols=131 Identities=15% Similarity=0.217 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CChhHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHhcCC--
Q 008105 379 DRAINSFNQMVSKNCQPDIVTYNTVLGALCK--E----GMLNEALQLLHLLNGSSC---SPCLITYNTLIDGLAKKGC-- 447 (577)
Q Consensus 379 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~-- 447 (577)
++.+.+++.|.+.|+.-+..+|-+....... . .....|..+++.|++... .++-.++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445666777777777666655543332222 1 134567778888877652 3444555555543 2333
Q ss_pred --HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh-cCC--HHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 008105 448 --MEKAMVLYGQMMENGISPDDI-THRTLIWGFCR-ADQ--VEEAVDLLKEIGKRGNKMRNSAYRLVIHG 511 (577)
Q Consensus 448 --~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~-~g~--~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 511 (577)
.+.++.+|+.+.+.|+..+.. -+.+-+-++.. ... ..++.++++.+.+.|+++....|..+.-.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 355677777777777655422 22222222222 111 45778888888888888777776655433
No 282
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.16 E-value=8.7 Score=32.70 Aligned_cols=133 Identities=12% Similarity=0.128 Sum_probs=61.6
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008105 209 LLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGC 288 (577)
Q Consensus 209 ~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 288 (577)
.+..+.+.+++|+...+..+++.+.+.|++....++ +..++-+|.......+-.+. +....+.++=-+|.++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH--
Confidence 334444555566666666666666666655443332 33333444433333222111 1222233333333322
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 008105 289 SPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNE 355 (577)
Q Consensus 289 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 355 (577)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0013455566666777777777766654322 222223445555555555544444444443
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.65 E-value=4.1 Score=35.32 Aligned_cols=95 Identities=14% Similarity=0.137 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCCccH----H
Q 008105 433 ITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPD--DITHRTLIWGFCRADQVEEAVDLLKEIGK---RGNKMRN----S 503 (577)
Q Consensus 433 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~----~ 503 (577)
..+..+...|++.|+.++|.+.|.++.+....+. ...+..++......|++..+...+.+... .+-.++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4566777778888888888888888777544443 33456677777777788777777776654 2211111 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 008105 504 AYRLVIHGLCKSKKVDMAIQVLELMI 529 (577)
Q Consensus 504 ~~~~li~~~~~~g~~~~A~~~~~~m~ 529 (577)
.|..+ .+...+++.+|.+.|-...
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccC
Confidence 22222 2345788888888887664
No 284
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.57 E-value=0.85 Score=26.68 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105 538 TVFSTIVKKVADDGMTEEAYKLWQKLIEWKV 568 (577)
Q Consensus 538 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (577)
.+|..+..++...|++++|+..+++.++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 3455666666666666666666666666443
No 285
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.46 E-value=0.91 Score=26.43 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105 538 TVFSTIVKKVADDGMTEEAYKLWQKLIEWKV 568 (577)
Q Consensus 538 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (577)
..|..+...+...|++++|++.+++.++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3455666667777777777777777666443
No 286
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.39 E-value=3.7 Score=35.63 Aligned_cols=96 Identities=13% Similarity=-0.015 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc--HHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHH
Q 008105 468 ITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMR--NSAYRLVIHGLCKSKKVDMAIQVLELMISS---RYKPDDTVFST 542 (577)
Q Consensus 468 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~ 542 (577)
..+..+...|++.|+.++|.+.|.++.+....+. ...+-.+|......|++..+...+.+.... +-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4678889999999999999999999988654443 456778899999999999999998887653 21222221111
Q ss_pred HHH--HHHhcCCHHHHHHHHHHH
Q 008105 543 IVK--KVADDGMTEEAYKLWQKL 563 (577)
Q Consensus 543 l~~--~~~~~g~~~~A~~~~~~~ 563 (577)
... .+...+++.+|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 222 345678888887766443
No 287
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.31 E-value=30 Score=37.44 Aligned_cols=225 Identities=14% Similarity=0.039 Sum_probs=123.0
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHH-HHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 008105 338 GSRGCWDAVDKILDIMNEASHSPTV-------FTYNILIN-GLCKYGLVDRAINSFNQMVSK----NCQPDIVTYNTVLG 405 (577)
Q Consensus 338 ~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~ 405 (577)
....++++|..+..++...-..|+. ..|+.+-. .....|+++.|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4577899999998887654322222 13333322 233468899999988877764 22345566777777
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHH---HHHHHH--HHHHhcCCH--HHHHHHHHHHHHCC---C---CCCHHHHHH
Q 008105 406 ALCKEGMLNEALQLLHLLNGSSCSPCLI---TYNTLI--DGLAKKGCM--EKAMVLYGQMMENG---I---SPDDITHRT 472 (577)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~li--~~~~~~g~~--~~A~~~~~~m~~~g---~---~p~~~~~~~ 472 (577)
+..-.|++++|..+..+..+..-.-+.. .|..+. ..+...|+. .+....|....... . .+-..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7888899999998887665432122333 333332 234456632 23333333332210 0 122334555
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHhhCCCCccHHHH--HHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCHHHHHHHHH
Q 008105 473 LIWGFCRA-DQVEEAVDLLKEIGKRGNKMRNSAY--RLVIHGLCKSKKVDMAIQVLELMISSRY----KPDDTVFSTIVK 545 (577)
Q Consensus 473 li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~l~~ 545 (577)
+..++.+. +...++..-++--......|-...+ ..|+......|++++|...++++..... .++-..-...++
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55665552 1222222222222222222222222 3677888899999999999999876322 223222233333
Q ss_pred --HHHhcCCHHHHHHHHHH
Q 008105 546 --KVADDGMTEEAYKLWQK 562 (577)
Q Consensus 546 --~~~~~g~~~~A~~~~~~ 562 (577)
.....|+.+++.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 34567888877766555
No 288
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.29 E-value=26 Score=36.82 Aligned_cols=178 Identities=14% Similarity=0.093 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHhh-------CCCCCCHHHHHHHHHHHHhC
Q 008105 168 IEKASKVLQIMVMSGGVPDTITYNMMVGG-----LCKRGQIRSAIALLDEMSV-------SGCEPDVITYNTILRTMFDN 235 (577)
Q Consensus 168 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~-------~g~~~~~~~~~~li~~~~~~ 235 (577)
...|.++++...+.| +...-..+..+ +....+.+.|...|+.+.. .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456888888887776 23332222222 3355688888888888765 33 333455566666553
Q ss_pred C-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH----hc
Q 008105 236 G-----KFKQAIGFWKDQLRKGCPPYLITYTILIEQVCK-QCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSC----KQ 305 (577)
Q Consensus 236 ~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~~ 305 (577)
. +.+.|..+|.+..+.| .|+.......+..... ..+...|.++|......|.. ..+-.+...|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 2 5666788877777665 3333333222221111 23567777888777777632 22222221111 22
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 008105 306 GKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEAS 357 (577)
Q Consensus 306 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 357 (577)
.+...|..++.+.-+.| .|...--...+..+.. +..+.+.-.+..+.+.+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 35667777777776666 2222222222223333 55555555555555544
No 289
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.29 E-value=9.9 Score=33.00 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=51.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCccHHHH-----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008105 475 WGFCRADQVEEAVDLLKEIGKRGNKMRNSAY-----RLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVAD 549 (577)
Q Consensus 475 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 549 (577)
..+..+|++++|..-++..... |....+ -.+.+.....|.+|+|...++...+.++ .......-.+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 4455667777777777665542 111222 2244455667777777777766553322 22233344566777
Q ss_pred cCCHHHHHHHHHHHHHcCCC
Q 008105 550 DGMTEEAYKLWQKLIEWKVF 569 (577)
Q Consensus 550 ~g~~~~A~~~~~~~~~~~~~ 569 (577)
.|+.++|+.-|++.++.+..
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 172 KGDKQEARAAYEKALESDAS 191 (207)
T ss_pred cCchHHHHHHHHHHHHccCC
Confidence 77777777777777766533
No 290
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.18 E-value=7 Score=32.26 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=38.3
Q ss_pred HHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 008105 433 ITYNTLIDGL---AKKGCMEKAMVLYGQMMENGISPD---DITHRTLIWGFCRADQVEEAVDLLKEIGKRG 497 (577)
Q Consensus 433 ~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 497 (577)
...+.|++.. ...++.+++..+++.|.-. .|+ ..++.. ..+...|++++|.++|++..+.+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDMFDG--WLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccC
Confidence 3444554443 3577888888888888753 343 333333 33567788888888888887654
No 291
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=90.00 E-value=23 Score=37.41 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDI 142 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~ 142 (577)
++..|+ .+..+.-.|.++.|.+++..
T Consensus 148 ~p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp SHHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred chhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 366666 57777777888888887743
No 292
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.29 E-value=32 Score=36.25 Aligned_cols=179 Identities=16% Similarity=0.100 Sum_probs=114.9
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhc
Q 008105 133 LTDASKLIDIMARRNQIPDFHFCINLIRG-----LIRIDRIEKASKVLQIMVM-------SGGVPDTITYNMMVGGLCKR 200 (577)
Q Consensus 133 ~~~A~~l~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~-------~g~~~~~~~~~~li~~~~~~ 200 (577)
...|..+++.....| +......+... +....+.+.|..+|+.+.+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 567899999888876 33333333333 3355789999999999977 45 334566677777764
Q ss_pred C-----ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----Hc
Q 008105 201 G-----QIRSAIALLDEMSVSGCEPDVITYNTILRTMFD-NGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVC----KQ 270 (577)
Q Consensus 201 g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 270 (577)
. +.+.|..++.+..+.| .|+....-..+.-... ..+...|.++|......| ...++-.+...|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCcC
Confidence 3 6678999999998887 5565544333333322 356789999999999888 3333333333222 22
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 008105 271 CGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGM 323 (577)
Q Consensus 271 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 323 (577)
.+...|..++.+....| .|....-...+..+.. +..+.+...+..+.+.|.
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 46888999999998887 3332222233334444 777777776666666553
No 293
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.19 E-value=26 Score=35.19 Aligned_cols=241 Identities=12% Similarity=0.105 Sum_probs=128.5
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC------CHHHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCHHHH
Q 008105 310 DAVLVINNLLSRGMEPNSITYNTLLHSLGSRG------CWDAVDKILDIMNEAS-H-SPTVFTYNILINGLCKYGLVDRA 381 (577)
Q Consensus 310 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g------~~~~a~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A 381 (577)
...++|++..+. -|+...|+..|..|...- .+.....+++...+.+ . +.....|..+.-.++..+...++
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 334556655543 445555666665554322 2333444444444332 1 23344555555555555443322
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhH-HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-HHHH-HH-HHH
Q 008105 382 INSFNQMVSKNCQPDIVTYNTVLGALCKEG-MLNE-ALQLLHLLNGSSCSPCLITYNTLIDGLAKKGC-MEKA-MV-LYG 456 (577)
Q Consensus 382 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~-A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A-~~-~~~ 456 (577)
-..+...++..+...|-.-+....+.. +++- -..++......-..+....|+... .++ .... .. ++.
T Consensus 378 ---a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~ 449 (568)
T KOG2396|consen 378 ---AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIIS 449 (568)
T ss_pred ---HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHH
Confidence 222222223445666655555444221 2221 122233333332233344444443 122 1111 11 122
Q ss_pred HHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh--cCChHHHHHHHHHHHH-CC
Q 008105 457 QMMENGISPDDITH-RTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCK--SKKVDMAIQVLELMIS-SR 532 (577)
Q Consensus 457 ~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~-~~ 532 (577)
..... ..|+..++ +.++.-+.+.|-.++|...+..+... .+|....|..+|..-.. .-+..-+.++++.|.. .|
T Consensus 450 a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg 527 (568)
T KOG2396|consen 450 ALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG 527 (568)
T ss_pred HHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC
Confidence 22222 24565554 56777788889999999999998875 35677778777764321 2237888999999886 35
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105 533 YKPDDTVFSTIVKKVADDGMTEEAYKLWQKLI 564 (577)
Q Consensus 533 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 564 (577)
.|+..|.-.+.--...|..+.+-.++-+..
T Consensus 528 --~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 528 --ADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred --CChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 788888888877778898887777655443
No 294
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.19 E-value=42 Score=37.59 Aligned_cols=115 Identities=22% Similarity=0.238 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHH----HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-
Q 008105 394 QPDIVTYNTVLGA----LCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDI- 468 (577)
Q Consensus 394 ~~~~~~~~~li~~----~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~- 468 (577)
.|+...+.....+ +.....+++|--.|+..-+. .--+.+|-.+|+|.+|..+..++.. ..|..
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHH
Confidence 3455444444433 33455666665555543221 2235566667777777777666542 11221
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008105 469 -THRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELM 528 (577)
Q Consensus 469 -~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 528 (577)
+-..|+.-+...++.-+|-++..+.... | ...+..|++...+++|.++....
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 2245666667777777777777666542 1 12345566777778877776654
No 295
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.15 E-value=34 Score=36.41 Aligned_cols=73 Identities=11% Similarity=0.107 Sum_probs=36.9
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008105 194 VGGLCKRGQIRSAIALLDEMSVSGCEP---DVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQ 270 (577)
Q Consensus 194 i~~~~~~g~~~~A~~~~~~~~~~g~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 270 (577)
|+-+.+.+.+++|+++-+..... .| -...+...|..+...|++++|-...-.|... +..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 34455556666666655444322 22 2344555666666666666666655555433 334444444444443
Q ss_pred CC
Q 008105 271 CG 272 (577)
Q Consensus 271 g~ 272 (577)
++
T Consensus 437 ~~ 438 (846)
T KOG2066|consen 437 DQ 438 (846)
T ss_pred cc
Confidence 33
No 296
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.02 E-value=17 Score=32.82 Aligned_cols=50 Identities=16% Similarity=0.006 Sum_probs=21.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHH
Q 008105 368 LINGLCKYGLVDRAINSFNQMVSK---NCQPDIVTYNTVLGALCKEGMLNEALQ 418 (577)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~ 418 (577)
.|-.|.-..++..|...++.-.+. .-+.+..+...|+.+|- .|+.+++.+
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~k 248 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKK 248 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHH
Confidence 333444445555555555553221 11223344444444442 344444433
No 297
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.64 E-value=20 Score=33.23 Aligned_cols=58 Identities=14% Similarity=0.103 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008105 471 RTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMI 529 (577)
Q Consensus 471 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 529 (577)
+.....|..+|.+.+|.++.++....+ +.+...+..++..+...|+--.|.+.++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 334455566666666666666665543 2355556666666666666555555555553
No 298
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.55 E-value=14 Score=31.40 Aligned_cols=133 Identities=13% Similarity=0.111 Sum_probs=67.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 008105 173 KVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKG 252 (577)
Q Consensus 173 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 252 (577)
+....+.+.+++|+...+..+++.+.+.|++..... +.+.++-+|.......+-.+. +.+..+.++--+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 445555566677777777777777777776554433 333444455444443332222 1223333333333322
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105 253 CPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLL 319 (577)
Q Consensus 253 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 319 (577)
=...+..++..+...|++-+|.++.+..... +......++.+..+.++...=..+++-..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0113455566677777777777777665322 22223344555555555444444444433
No 299
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.19 E-value=2 Score=32.21 Aligned_cols=63 Identities=10% Similarity=0.095 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008105 482 QVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVK 545 (577)
Q Consensus 482 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 545 (577)
+.=++.+-++.+...++.|++......+++|.+.+++..|.++++-...+ ...+..+|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 34456666666666778888888888888888888888888888876642 2224556666654
No 300
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.17 E-value=8.3 Score=38.18 Aligned_cols=90 Identities=16% Similarity=0.255 Sum_probs=40.8
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008105 478 CRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAY 557 (577)
Q Consensus 478 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 557 (577)
...|.++.+...+....+. +.....+..++++...+.|++++|...-+.|+...++ ++++.......-...|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHH
Confidence 3445555555554443321 1123334455555555555555555555555543322 2333322222333445555555
Q ss_pred HHHHHHHHcCCC
Q 008105 558 KLWQKLIEWKVF 569 (577)
Q Consensus 558 ~~~~~~~~~~~~ 569 (577)
-.|+++...+++
T Consensus 412 ~~wk~~~~~~~~ 423 (831)
T PRK15180 412 HYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccCCh
Confidence 555555544433
No 301
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.04 E-value=5.6 Score=30.31 Aligned_cols=60 Identities=10% Similarity=0.108 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008105 485 EAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVK 545 (577)
Q Consensus 485 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 545 (577)
+..+-++.+...++.|.+......+++|.+.+++..|.++++-...+ ..+...+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 45555666666777888888888888888888888888888877642 2233336666654
No 302
>PRK09687 putative lyase; Provisional
Probab=87.64 E-value=25 Score=33.14 Aligned_cols=232 Identities=16% Similarity=0.087 Sum_probs=100.7
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCH----HHHHHHHHHHHhCCCCCCHHHH
Q 008105 290 PDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCW----DAVDKILDIMNEASHSPTVFTY 365 (577)
Q Consensus 290 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~~ 365 (577)
+|.......+.++...|.. ++...+..+.. .+|...-...+.+++..|+. +++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 4555555566666655542 23333333332 22444444445555555542 3444555444222 2444444
Q ss_pred HHHHHHHHHcCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105 366 NILINGLCKYGL-----VDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLID 440 (577)
Q Consensus 366 ~~li~~~~~~g~-----~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 440 (577)
...+.++...+. ...+...+..... .++..+-...+.++.+.++ +++...+-.+.+. ++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 444444444322 1223333333222 2244444555555555554 3344444444332 23333333444
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChH
Q 008105 441 GLAKKG-CMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVD 519 (577)
Q Consensus 441 ~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 519 (577)
++.+.+ +...+...+..+.. .+|...-...+.++.+.|+ .++...+-+..+.+. .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-
Confidence 444332 12344444444443 2455555555555555555 334444444433221 122345555555553
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008105 520 MAIQVLELMISSRYKPDDTVFSTIVKK 546 (577)
Q Consensus 520 ~A~~~~~~m~~~~~~p~~~~~~~l~~~ 546 (577)
+|...+.++.+. .||..+-...+.+
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 455555555532 2344444443333
No 303
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.52 E-value=44 Score=35.73 Aligned_cols=227 Identities=13% Similarity=0.130 Sum_probs=95.5
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh---c
Q 008105 335 HSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKN-CQPDIVTYNTVLGALCK---E 410 (577)
Q Consensus 335 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~---~ 410 (577)
..+.-.|+++.|.+.+-.. .....+.+++...+..|.-.+-.+... ..+.... -.|....+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 3445689999999988772 223345555555554433222111111 3333221 01222668888988886 4
Q ss_pred CChhHHHHHHHHHhhCCCCCCHHHHHHHH-HHHHhcCCHHHHH-----------HHHHHHHH-CCCCC-CHHH---HHHH
Q 008105 411 GMLNEALQLLHLLNGSSCSPCLITYNTLI-DGLAKKGCMEKAM-----------VLYGQMME-NGISP-DDIT---HRTL 473 (577)
Q Consensus 411 g~~~~A~~~~~~~~~~~~~p~~~~~~~li-~~~~~~g~~~~A~-----------~~~~~m~~-~g~~p-~~~~---~~~l 473 (577)
.+..+|.+.+-.+....-+.....+...+ ......++++.-+ -++++-.+ .++.. +... ....
T Consensus 341 td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~ 420 (613)
T PF04097_consen 341 TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQA 420 (613)
T ss_dssp T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHH
Confidence 67888998888776644222222222222 2222333222211 11111000 01111 2222 2233
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHH-HHHHhcCC-----------hHHHHHHHHHHHHCC-----CCC-
Q 008105 474 IWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVI-HGLCKSKK-----------VDMAIQVLELMISSR-----YKP- 535 (577)
Q Consensus 474 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li-~~~~~~g~-----------~~~A~~~~~~m~~~~-----~~p- 535 (577)
..-+...|++++|..+|+-..+.+ .-....+..+ .+...... ...|..+.+.....+ +.+
T Consensus 421 A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~ 498 (613)
T PF04097_consen 421 AREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRK 498 (613)
T ss_dssp HHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HH
T ss_pred HHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHH
Confidence 344667888888888887765421 0112222222 22222222 334555555443321 111
Q ss_pred CHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008105 536 DDTVFSTIVK-----KVADDGMTEEAYKLWQKLIEWKVFEK 571 (577)
Q Consensus 536 ~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~~~~~ 571 (577)
+..++..|++ .+...|++++|.+.++ +.++.|.
T Consensus 499 ~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~---~L~liP~ 536 (613)
T PF04097_consen 499 NRETFQLLLDLAEFFDLYHAGQYEQALDIIE---KLDLIPL 536 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH---HTT-S-S
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH---hCCCCCC
Confidence 2445555544 3578899999976655 4556664
No 304
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.42 E-value=30 Score=33.78 Aligned_cols=66 Identities=17% Similarity=0.084 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105 430 PCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISP---DDITHRTLIWGFCRADQVEEAVDLLKEIGK 495 (577)
Q Consensus 430 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 495 (577)
....+|..++..+.+.|.++.|...+.++...+... ++.....-+......|+..+|...+++...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888888889999999999888887643111 333444445566677888889888888776
No 305
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.40 E-value=0.77 Score=27.09 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=9.0
Q ss_pred CHHHHHHHHHHHHhcCChHHH
Q 008105 186 DTITYNMMVGGLCKRGQIRSA 206 (577)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A 206 (577)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 334444444444444444443
No 306
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.06 E-value=7 Score=39.88 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=23.3
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 008105 198 CKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQ 248 (577)
Q Consensus 198 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 248 (577)
.+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|.+.
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34555555555443332 4445555555555555555555555443
No 307
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.89 E-value=18 Score=30.52 Aligned_cols=50 Identities=20% Similarity=0.251 Sum_probs=21.8
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHhCCChHHHHHHHHHHHH
Q 008105 199 KRGQIRSAIALLDEMSVSGCEPDVITYN-TILRTMFDNGKFKQAIGFWKDQLR 250 (577)
Q Consensus 199 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~-~li~~~~~~~~~~~A~~~~~~~~~ 250 (577)
+.++.+++..+++-+... .|...... .-...+...|++.+|+.+|+++..
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555555433 23222211 112223445555555555555443
No 308
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.79 E-value=0.9 Score=26.79 Aligned_cols=22 Identities=18% Similarity=0.052 Sum_probs=12.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHH
Q 008105 151 DFHFCINLIRGLIRIDRIEKAS 172 (577)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~ 172 (577)
|..+|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5555555555555555555553
No 309
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.78 E-value=7.4 Score=34.04 Aligned_cols=78 Identities=12% Similarity=0.080 Sum_probs=47.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHH
Q 008105 478 CRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISS---RYKPDDTVFSTIVKKVADDGMTE 554 (577)
Q Consensus 478 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~ 554 (577)
.+.|+ ++|.+.|-.+...+.--++.....+..-| ...+.++++.++-+.++. +-.+|+..+.+|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 55666666666655443444444444333 355777777777776652 33667777777777777777777
Q ss_pred HHH
Q 008105 555 EAY 557 (577)
Q Consensus 555 ~A~ 557 (577)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 663
No 310
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.23 E-value=13 Score=34.76 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 008105 377 LVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLN 424 (577)
Q Consensus 377 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 424 (577)
++++++.++..=++-|+-||.++++.+|+.+.+.+++.+|..+.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555444443
No 311
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.99 E-value=6.6 Score=29.58 Aligned_cols=46 Identities=13% Similarity=0.134 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105 449 EKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIG 494 (577)
Q Consensus 449 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 494 (577)
=++.+-++.+....+.|++....+.+.+|.+-.++.-|.++|+-+.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455555555555666666666777777777777777777776655
No 312
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.54 E-value=12 Score=38.25 Aligned_cols=149 Identities=16% Similarity=0.110 Sum_probs=89.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 008105 340 RGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQL 419 (577)
Q Consensus 340 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 419 (577)
.|+++.|..++..+. ...-+.+...+.+.|..++|+++- +|+.-. .....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHH
Confidence 455555554433332 223455566666677666665442 222111 2234466788888777
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 008105 420 LHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNK 499 (577)
Q Consensus 420 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 499 (577)
..+.. +..-|..|.++....+++..|.+.|.+..+ |..|+-.+...|+-+....+-....+.|.
T Consensus 660 a~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~- 723 (794)
T KOG0276|consen 660 AVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK- 723 (794)
T ss_pred HHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-
Confidence 65543 456788888888888888888888876654 45666667777776665555555555542
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008105 500 MRNSAYRLVIHGLCKSKKVDMAIQVLELM 528 (577)
Q Consensus 500 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m 528 (577)
.|. ..-+|...|+++++.+++.+-
T Consensus 724 ~N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 NNL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred cch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 122 233566678888887777654
No 313
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.52 E-value=10 Score=35.40 Aligned_cols=103 Identities=19% Similarity=0.229 Sum_probs=65.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 008105 182 GGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSG---CEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLI 258 (577)
Q Consensus 182 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 258 (577)
|.+....+-..++..-....+++.+...+-++...- ..|+. +-.++++.+. .-+.++++.++..=++-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 444455555666666566677777777776665320 11111 1112222222 335667887777777788888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008105 259 TYTILIEQVCKQCGIARAIEVLDDMAIE 286 (577)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 286 (577)
+++.+++.+.+.+++.+|.++.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888777666544
No 314
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=85.27 E-value=41 Score=35.56 Aligned_cols=60 Identities=8% Similarity=0.107 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDF-HFCINLIRGLIRIDRIEKASKVLQIM 178 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~ 178 (577)
..-..|+.-.-+.. .....+...++.....++.. ..|-..+..+.-.|.+++|.+++...
T Consensus 114 ~v~~~Ll~WvNr~~-~~~~~~~~~~vl~~~~p~~~~p~FW~~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 114 PVPEQLLDWVNRFH-FPPSEELAEEVLSSEPPYEHDPDFWDYVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHHHHHHHHTTS---SHHHHHTTSCSS-HSCSGSHHHHHHHHHHHHTT-HHHHHHHH-TT
T ss_pred chHHHHHHHHHHhC-CCCchhHHHHHhccCCCCccchhHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 34555665553332 22233333333332223333 44555788889999999999998543
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.80 E-value=2.2 Score=26.12 Aligned_cols=28 Identities=14% Similarity=0.341 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMAR 145 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~ 145 (577)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566677777777777777777766554
No 316
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.79 E-value=2.6 Score=24.49 Aligned_cols=28 Identities=7% Similarity=0.062 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 008105 119 TNNKILQNFCSRGKLTDASKLIDIMARR 146 (577)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~ 146 (577)
+|..+...|...|++++|+..|++.++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4556666666666666666666666553
No 317
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.52 E-value=9.5 Score=33.20 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=62.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh
Q 008105 440 DGLAKKGCMEKAMVLYGQMMENGISPD-----DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCK 514 (577)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 514 (577)
.-+...|++++|..-|.+.++.- ++. .+.|..-..++.+.+.++.|++-..+..+.+.. .......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 45678899999999999888742 222 234555556677888888888888877775432 22333344567888
Q ss_pred cCChHHHHHHHHHHHHC
Q 008105 515 SKKVDMAIQVLELMISS 531 (577)
Q Consensus 515 ~g~~~~A~~~~~~m~~~ 531 (577)
...+++|++-|+++++.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 88899999999888864
No 318
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.75 E-value=16 Score=32.00 Aligned_cols=79 Identities=9% Similarity=-0.077 Sum_probs=47.2
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCH
Q 008105 197 LCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRK---GCPPYLITYTILIEQVCKQCGI 273 (577)
Q Consensus 197 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~ 273 (577)
..+.|+ ++|++.|-.+...+.--++.....|...|. ..+.++++.++.+.++. +-.+|+..+.+|+..+.+.|+.
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 334444 566666666666554444444444444443 56677777777666553 2256677777777777777777
Q ss_pred HHHH
Q 008105 274 ARAI 277 (577)
Q Consensus 274 ~~A~ 277 (577)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7664
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.53 E-value=3.1 Score=25.42 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105 538 TVFSTIVKKVADDGMTEEAYKLWQKLIE 565 (577)
Q Consensus 538 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (577)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777777654
No 320
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=83.20 E-value=48 Score=32.36 Aligned_cols=68 Identities=18% Similarity=0.064 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008105 394 QPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSP---CLITYNTLIDGLAKKGCMEKAMVLYGQMMEN 461 (577)
Q Consensus 394 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 461 (577)
.....+|..+...+-+.|.++.|...+..+...+... .......-+...-..|+..+|...+++..+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456678889999999999999999999888754211 3344445566677889999999999988873
No 321
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.92 E-value=19 Score=27.55 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=22.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105 451 AMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGK 495 (577)
Q Consensus 451 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 495 (577)
..+-+..+....+.|++....+.+.+|.+-.++.-|.++|+-+..
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333444444445555666666666666666666666666655543
No 322
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.85 E-value=4 Score=23.54 Aligned_cols=28 Identities=11% Similarity=0.081 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 008105 119 TNNKILQNFCSRGKLTDASKLIDIMARR 146 (577)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~ 146 (577)
.|..+...|.+.|++++|++.|++.++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3445555555666666666666555543
No 323
>PRK09687 putative lyase; Provisional
Probab=81.77 E-value=47 Score=31.32 Aligned_cols=78 Identities=10% Similarity=0.088 Sum_probs=32.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHhhCCCCCCHHHHH
Q 008105 151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI----RSAIALLDEMSVSGCEPDVITYN 226 (577)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~g~~~~~~~~~ 226 (577)
|.......+.++...|. +++...+..+.+ .+|...-...+.++...|+. +++...+..+... .++..+-.
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 44444444444444443 222222333322 22444444445555555542 3444555444222 34444444
Q ss_pred HHHHHHHh
Q 008105 227 TILRTMFD 234 (577)
Q Consensus 227 ~li~~~~~ 234 (577)
..+.++..
T Consensus 110 ~A~~aLG~ 117 (280)
T PRK09687 110 SAINATGH 117 (280)
T ss_pred HHHHHHhc
Confidence 44444443
No 324
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.36 E-value=3.3 Score=24.00 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105 538 TVFSTIVKKVADDGMTEEAYKLWQKLIEWKV 568 (577)
Q Consensus 538 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (577)
.+|..+...+...|++++|.+.+++.++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3566667777777888888877777776443
No 325
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.35 E-value=3.3 Score=23.69 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=15.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105 542 TIVKKVADDGMTEEAYKLWQKLIEWKV 568 (577)
Q Consensus 542 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (577)
.+..++.+.|++++|.+.++++++.-|
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 344555556666666666666665433
No 326
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.96 E-value=13 Score=32.93 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=26.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008105 158 LIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEM 213 (577)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 213 (577)
.++.+.+.+.+.+|+...++-++.. +.|...-..+++.||-.|++++|..-++-.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3444445555555555555444443 233444444555555555555555444433
No 327
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.80 E-value=1.6e+02 Score=36.20 Aligned_cols=316 Identities=13% Similarity=0.048 Sum_probs=161.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 008105 227 TILRTMFDNGKFKQAIGFWKDQLRKGCP--PYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCK 304 (577)
Q Consensus 227 ~li~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 304 (577)
++..+-.+.+.+..|...++.-.....+ ....-|-.+...|...++++....+...-.. .| ....-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~---sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP---SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc---cHHHHHHHHHh
Confidence 4445556778888888888874111111 1122344444578888888877766653111 12 23344556677
Q ss_pred cCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCCHHHHH
Q 008105 305 QGKYDDAVLVINNLLSRGMEPN-SITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNIL-INGLCKYGLVDRAI 382 (577)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~ 382 (577)
.|+++.|...|+.+.+.+ |+ ..+++-++......+.+.......+...... .+....++.+ +.+--+.++++...
T Consensus 1462 ~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhh
Confidence 899999999999998774 44 5677777777777788887777666655432 2333333332 34445667766665
Q ss_pred HHHHHHHHCCCCCCHHHHHHH--HHHHHhcC--ChhHHHHHHHHHhhC--------CCC-CCHHHHHHHHHHHHhcCCHH
Q 008105 383 NSFNQMVSKNCQPDIVTYNTV--LGALCKEG--MLNEALQLLHLLNGS--------SCS-PCLITYNTLIDGLAKKGCME 449 (577)
Q Consensus 383 ~~~~~m~~~~~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~~~~~~~--------~~~-p~~~~~~~li~~~~~~g~~~ 449 (577)
.... .. +..+|... .....+.. +.-.-.+..+.+.+. +.. .-...|..++....-..-
T Consensus 1539 ~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el-- 1609 (2382)
T KOG0890|consen 1539 SYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL-- 1609 (2382)
T ss_pred hhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH--
Confidence 5544 11 22223222 22221111 111111122211111 000 011233333333222111
Q ss_pred HHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHH-HhhC----CC-CccHHHHHHHHHHHHhcCC
Q 008105 450 KAMVLYGQMMENGISPDD------ITHRTLIWGFCRADQVEEAVDLLKE-IGKR----GN-KMRNSAYRLVIHGLCKSKK 517 (577)
Q Consensus 450 ~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~-m~~~----~~-~~~~~~~~~li~~~~~~g~ 517 (577)
....+.. .++.++. .-|..-+..-....+..+-.--+++ +... +. .--..+|....+....+|+
T Consensus 1610 --~~~~~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1610 --ENSIEEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred --HHHHHHh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 1111111 1122221 1222222211111122222222222 1111 11 1124567778888888999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008105 518 VDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWK 567 (577)
Q Consensus 518 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (577)
++.|...+-+..+.+ -+..+.-.++-+...|+...|..++++-++.+
T Consensus 1686 ~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999998887776644 34556667778889999999999998888654
No 328
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.61 E-value=54 Score=30.63 Aligned_cols=55 Identities=11% Similarity=0.023 Sum_probs=27.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008105 333 LLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQM 388 (577)
Q Consensus 333 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 388 (577)
....|..+|.+.+|.++.+...+.. +.+...+-.++..+...|+--.|.+-++++
T Consensus 285 va~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3344555555555555555554432 234444555555555555544444444443
No 329
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.47 E-value=28 Score=30.45 Aligned_cols=89 Identities=18% Similarity=0.097 Sum_probs=45.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 008105 162 LIRIDRIEKASKVLQIMVMSGGVP----DTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGK 237 (577)
Q Consensus 162 ~~~~g~~~~A~~~~~~~~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 237 (577)
+.+.|++++|..-|.+.+..-+.. ....|..-..++.+.+.++.|++-..+..+.+ +........-..+|-+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 445556666665555555442111 12233333445556666666666665555443 2222233333445666666
Q ss_pred hHHHHHHHHHHHHC
Q 008105 238 FKQAIGFWKDQLRK 251 (577)
Q Consensus 238 ~~~A~~~~~~~~~~ 251 (577)
+++|++=|+++++.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666654
No 330
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.88 E-value=36 Score=28.24 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=28.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHhhHH-HHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105 269 KQCGIARAIEVLDDMAIEGCSPDIVTYN-SLVNFSCKQGKYDDAVLVINNLLSR 321 (577)
Q Consensus 269 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~ 321 (577)
..++.+++..+++.|... .|+..-.. .-...+...|++++|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 356666666666666543 23322111 1123355667777777777776655
No 331
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=78.83 E-value=47 Score=29.54 Aligned_cols=184 Identities=14% Similarity=0.072 Sum_probs=104.1
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 008105 336 SLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNE 415 (577)
Q Consensus 336 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 415 (577)
.|-+.|-++-|.-=|.+..... |.-+.+||-+.--+...|+++.|.+.|+...+.+..-+-...|.-|. +.-.|++.-
T Consensus 74 lYDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~L 151 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKL 151 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHh
Confidence 3556677777777777666543 23456788888888888999999999988887753333333333332 234578888
Q ss_pred HHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105 416 ALQLLHLLNGSS-CSPCLITYNTLIDGLAKKGCMEKAMVLY-GQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEI 493 (577)
Q Consensus 416 A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 493 (577)
|.+-+...-+.+ ..|-...|--++. ..-++.+|..-+ ++... .|..-|...+-.|.- |++. ...+++++
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~ 222 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERL 222 (297)
T ss_pred hHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHH
Confidence 877666554443 2333334433332 233556665433 33332 354555544444332 2221 12233333
Q ss_pred hhCCC------CccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105 494 GKRGN------KMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 494 ~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 530 (577)
....- ..-.+||--+.+-+...|+.++|..+|+-.+.
T Consensus 223 ~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 223 KADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 32111 01134666777788888888888888887764
No 332
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.69 E-value=6.8 Score=36.99 Aligned_cols=92 Identities=14% Similarity=0.136 Sum_probs=58.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCh
Q 008105 440 DGLAKKGCMEKAMVLYGQMMENGISP-DDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKV 518 (577)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 518 (577)
+-|.++|.+++|++.|...+.. .| +.+++..-..+|.+..++..|..-.......+- .-...|..-..+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhH
Confidence 4688999999999999887764 45 788888888889988888877776666654321 1112222222222334455
Q ss_pred HHHHHHHHHHHHCCCCCC
Q 008105 519 DMAIQVLELMISSRYKPD 536 (577)
Q Consensus 519 ~~A~~~~~~m~~~~~~p~ 536 (577)
.+|.+-++..+ .+.|+
T Consensus 182 ~EAKkD~E~vL--~LEP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVL--ALEPK 197 (536)
T ss_pred HHHHHhHHHHH--hhCcc
Confidence 55555555555 34666
No 333
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.44 E-value=27 Score=26.60 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=25.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 008105 162 LIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSG 217 (577)
Q Consensus 162 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 217 (577)
+...|+|++|..+.+.+ ..||...|-+|-. .+.|..+++..-+.+|...|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 44556666666555544 2556555554433 24455555555555555444
No 334
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.37 E-value=48 Score=33.33 Aligned_cols=108 Identities=16% Similarity=0.053 Sum_probs=64.0
Q ss_pred HHhcCCHHHHHHHHHHHH---HCCC--CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-------CCCCcc-----
Q 008105 442 LAKKGCMEKAMVLYGQMM---ENGI--SPD---DITHRTLIWGFCRADQVEEAVDLLKEIGK-------RGNKMR----- 501 (577)
Q Consensus 442 ~~~~g~~~~A~~~~~~m~---~~g~--~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~~~----- 501 (577)
+.-.|++.+|.+++...- ..|. .|. -..||.|.....+.|.+..+..+|.+..+ .|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 345667777766655431 1221 121 12235555555555666666666655542 343332
Q ss_pred ------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008105 502 ------NSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDG 551 (577)
Q Consensus 502 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 551 (577)
..+||+ .-.|.+.|++-.|.+.|.+... -+..++..|-.|..+|....
T Consensus 330 s~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~-vfh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 330 SQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVH-VFHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred hcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHH-HHhcCcHHHHHHHHHHHHHh
Confidence 234554 3357788999999999988876 45678889999988886543
No 335
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=78.10 E-value=60 Score=30.37 Aligned_cols=114 Identities=16% Similarity=0.140 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-cC-ChhHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008105 378 VDRAINSFNQMVS-KNCQPDIVTYNTVLGALCK-EG-MLNEALQLLHLLNGS-SCSPCLITYNTLIDGLAKKGCMEKAMV 453 (577)
Q Consensus 378 ~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~ 453 (577)
+.+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+-+... +-.++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555553211 1233455555555555443 11 112222222222221 224455555666666666666666666
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008105 454 LYGQMMEN-GISPDDITHRTLIWGFCRADQVEEAVDLLK 491 (577)
Q Consensus 454 ~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 491 (577)
+++..... +..-|...|..++......|+..-...+.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 66665543 334455566666666666666555554444
No 336
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=78.03 E-value=77 Score=31.52 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 008105 260 YTILIEQVCKQCGIARAIEVLDDM 283 (577)
Q Consensus 260 ~~~l~~~~~~~g~~~~A~~~~~~~ 283 (577)
...+|.-|...|++.+..+.++++
T Consensus 348 ~~~IIqEYFlsgDt~Evi~~L~DL 371 (645)
T KOG0403|consen 348 LTPIIQEYFLSGDTPEVIRSLRDL 371 (645)
T ss_pred hHHHHHHHHhcCChHHHHHHHHHc
Confidence 345667777777777777777654
No 337
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.94 E-value=0.84 Score=38.00 Aligned_cols=54 Identities=17% Similarity=0.283 Sum_probs=30.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008105 123 ILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQ 176 (577)
Q Consensus 123 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 176 (577)
+++.+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 445555566666666666666655444455566666666666655555555544
No 338
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.88 E-value=0.68 Score=38.59 Aligned_cols=85 Identities=12% Similarity=0.122 Sum_probs=56.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCC
Q 008105 438 LIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKK 517 (577)
Q Consensus 438 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 517 (577)
+++.+.+.+.++....+++.+...+...+....+.++..|++.+..++..++++.... .-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence 5566666777777778888887665556677778888888888776777777662111 222346677777788
Q ss_pred hHHHHHHHHHHH
Q 008105 518 VDMAIQVLELMI 529 (577)
Q Consensus 518 ~~~A~~~~~~m~ 529 (577)
+++|.-++.++-
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 888877777653
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.76 E-value=3.2 Score=26.23 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=11.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 008105 508 VIHGLCKSKKVDMAIQVLELMI 529 (577)
Q Consensus 508 li~~~~~~g~~~~A~~~~~~m~ 529 (577)
+..+|...|+.+.|.+++++.+
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3444555555555555555444
No 340
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=77.31 E-value=53 Score=29.26 Aligned_cols=29 Identities=21% Similarity=0.100 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 008105 328 ITYNTLLHSLGSRGCWDAVDKILDIMNEA 356 (577)
Q Consensus 328 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 356 (577)
.||--+.+.+...|+.++|..+|+.....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45555556666666666666666655543
No 341
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=76.81 E-value=17 Score=34.50 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=41.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008105 124 LQNFCSRGKLTDASKLIDIMARRNQIP-DFHFCINLIRGLIRIDRIEKASKVLQIMVM 180 (577)
Q Consensus 124 i~~~~~~g~~~~A~~l~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 180 (577)
.+-|.++|++++|+..|...... .| |..++..-..+|.+..++..|..=....+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 46678888888888888877664 34 777787788888888888877766665553
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.60 E-value=6.2 Score=24.91 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=8.5
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 008105 160 RGLIRIDRIEKASKVLQIMV 179 (577)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~~~ 179 (577)
.+|...|+.+.|+++++++.
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 33444444444444444443
No 343
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=75.81 E-value=71 Score=30.02 Aligned_cols=170 Identities=16% Similarity=0.179 Sum_probs=77.1
Q ss_pred CHHHHHHHHH-HHHHcCC-HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 008105 256 YLITYTILIE-QVCKQCG-IARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTL 333 (577)
Q Consensus 256 ~~~~~~~l~~-~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 333 (577)
+...++.|.. .+.+.|= ..-|.++|+..... ...+.++..+.+.+.-+.-+++| +|+..+-...
T Consensus 164 ~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~F 229 (412)
T KOG2297|consen 164 PATVLQSLLNDNLVKEGIALSFAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHF 229 (412)
T ss_pred CHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHH
Confidence 3344444433 3333332 34456677666533 23556666665555544444444 6666655555
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHCCCCCCHH----HHHHHHHHHH
Q 008105 334 LHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQ-MVSKNCQPDIV----TYNTVLGALC 408 (577)
Q Consensus 334 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~----~~~~li~~~~ 408 (577)
...+...|--+-..-.-.++.. + .-...-..|.+-..+...+++.....++ |.+.+ -|++. .|..++++-
T Consensus 230 ak~Ft~agL~elvey~~~q~~~-~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsav- 304 (412)
T KOG2297|consen 230 AKYFTDAGLKELVEYHRNQQSE-G--ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAV- 304 (412)
T ss_pred HHHHhHhhHHHHHHHHHHHHHH-H--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHH-
Confidence 5555444422211111000000 0 0001112222333334445555554444 44444 45543 455555543
Q ss_pred hcCChhHHHHHH-HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008105 409 KEGMLNEALQLL-HLLNGSSCSPCLITYNTLIDGLAKKGCMEKAM 452 (577)
Q Consensus 409 ~~g~~~~A~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 452 (577)
.|.+-.++. ++..+ ...+|..|+.+++..|+.+-.+
T Consensus 305 ---eWnKkeelva~qalr-----hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 305 ---EWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred ---hhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChHHHHH
Confidence 333222222 22222 2457888888888888876543
No 344
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=75.44 E-value=2.1e+02 Score=35.28 Aligned_cols=322 Identities=9% Similarity=0.027 Sum_probs=164.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008105 192 MMVGGLCKRGQIRSAIALLDEMSVSGC--EPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCK 269 (577)
Q Consensus 192 ~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 269 (577)
.+..+-.+++.+.+|...++.-..... .....-|..+...|...++++....+...-.. +...+ .-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 444556678899999999988421100 11233344455589999999988877664211 22222 33445678
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH-HHHHHccCCHHHHHH
Q 008105 270 QCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTL-LHSLGSRGCWDAVDK 348 (577)
Q Consensus 270 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~a~~ 348 (577)
.|+++.|...|+.+.+.+ ++...+++-++..-...|.+....-..+-.... ..+....++.+ +.+-=+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999774 333677887777777777777776655544433 12233333332 233345667776666
Q ss_pred HHHHHHhCCCCCCHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHHC--------CCC-CCHHHHHHHHHHHHhcCChhH
Q 008105 349 ILDIMNEASHSPTVFTYNIL--INGLCKYG--LVDRAINSFNQMVSK--------NCQ-PDIVTYNTVLGALCKEGMLNE 415 (577)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~~~m~~~--------~~~-~~~~~~~~li~~~~~~g~~~~ 415 (577)
.+. .. +..+|... .....+.. +.-.-.+..+.+.+. +.. .-...|..++....-..-...
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 655 11 22233322 22222211 111111122222211 101 111234444333322211111
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHH
Q 008105 416 ALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQ-MMEN----GIS-PDDITHRTLIWGFCRADQVEEAVDL 489 (577)
Q Consensus 416 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~~~ 489 (577)
...+...-......-+...|..-+..-....+..+-+--+++ +... +.. --..+|....+...++|.++.|...
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 111110000000011111222222111111111111111111 1111 111 1256788888888889999999998
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008105 490 LKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISS 531 (577)
Q Consensus 490 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 531 (577)
+-...+.+ . +..+--....+...|+...|+.++++-++.
T Consensus 1693 ll~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1693 LLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 87777654 2 245556778889999999999999998853
No 345
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.82 E-value=4.3 Score=22.03 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=11.0
Q ss_pred HHHHHHHHhcCChhhHHHHHH
Q 008105 121 NKILQNFCSRGKLTDASKLID 141 (577)
Q Consensus 121 ~~li~~~~~~g~~~~A~~l~~ 141 (577)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555555555555555543
No 346
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.73 E-value=25 Score=31.23 Aligned_cols=128 Identities=17% Similarity=0.188 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHH
Q 008105 434 TYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRG--NKMRNSAYRLVIHG 511 (577)
Q Consensus 434 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~ 511 (577)
|.+.-++.+.+.+.+.+|+...++-++.. +-|..+-..+++.+|-.|++++|..-++-.-+.. ..+-...|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 45566778888999999999998888763 3456667788899999999999998888766532 23345567766654
Q ss_pred HHhcCChHHHHHHHHHHHHCCCC------CCHHHHHHHHHHH-Hhc-CCHHHHHHHHHHHHHcCCCCCc
Q 008105 512 LCKSKKVDMAIQVLELMISSRYK------PDDTVFSTIVKKV-ADD-GMTEEAYKLWQKLIEWKVFEKG 572 (577)
Q Consensus 512 ~~~~g~~~~A~~~~~~m~~~~~~------p~~~~~~~l~~~~-~~~-g~~~~A~~~~~~~~~~~~~~~~ 572 (577)
-. +. ++...-+.. |.+.-...|..++ ++. |.-+.+..+-+...+..+.|-+
T Consensus 82 ea-------~R---~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 82 EA-------AR---NEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HH-------HH---HHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 22 11 222222222 3333334444443 233 3444456666677777776654
No 347
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=73.54 E-value=14 Score=29.40 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008105 485 EAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVK 545 (577)
Q Consensus 485 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 545 (577)
+..+-++.....++.|++......+++|.+.+++..|.++|+-... ...+...+|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~-K~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD-KCGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH-hcccHHHHHHHHHH
Confidence 4555556666677888888888888888888888888888887765 23334445665543
No 348
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.47 E-value=80 Score=29.08 Aligned_cols=201 Identities=14% Similarity=0.136 Sum_probs=111.6
Q ss_pred CCCCCHHHHHHHHHHH-HhCCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC-
Q 008105 217 GCEPDVITYNTILRTM-FDNGKFKQAIGFWKDQLRKGCPPYL---ITYTILIEQVCKQCGIARAIEVLDDMAIE---GC- 288 (577)
Q Consensus 217 g~~~~~~~~~~li~~~-~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~- 288 (577)
+-+||+..=|..-..- .+..++++|+.-|++.++..-.... .+...++....+.+++++....+.++... .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3456665444322211 2345788888888888765322222 23445677788888888888888877531 11
Q ss_pred -CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC---
Q 008105 289 -SPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSR-GMEPNSI----TYNTLLHSLGSRGCWDAVDKILDIMNEASHS--- 359 (577)
Q Consensus 289 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--- 359 (577)
.-+..+.|+++.......+.+--...++.-++. .-..+.. |-..|...|...+.+....+++.++.+.-..
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 123456677776666666666555555543321 0011111 2345666777777777777877777654111
Q ss_pred -CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH-----HHhcCChhHHHH
Q 008105 360 -PT-------VFTYNILINGLCKYGLVDRAINSFNQMVSK-NCQPDIVTYNTVLGA-----LCKEGMLNEALQ 418 (577)
Q Consensus 360 -~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~-----~~~~g~~~~A~~ 418 (577)
.| ...|..=|..|....+-..-..+|++.+.. ...|.+..... |.- ..+.|++++|..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHh
Confidence 11 234556666776666666666677665532 22444443332 332 335567776653
No 349
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=72.24 E-value=1.2e+02 Score=30.94 Aligned_cols=94 Identities=13% Similarity=0.068 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008105 326 NSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLG 405 (577)
Q Consensus 326 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 405 (577)
|.....+++..++..-.+.-.+.+..+|...| .+-..|-.++..|... ..+.-..+++++.+..+ .|.+.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 44455555555555555555555555555543 3444555555555555 33445555555555421 12222222333
Q ss_pred HHHhcCChhHHHHHHHHHh
Q 008105 406 ALCKEGMLNEALQLLHLLN 424 (577)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~~ 424 (577)
-|-+ ++.+.+...|..+.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHH-hchhhHHHHHHHHH
Confidence 3322 44444444444443
No 350
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=71.65 E-value=1.6e+02 Score=32.24 Aligned_cols=226 Identities=14% Similarity=0.096 Sum_probs=121.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH-------hhHHHHH-HHHHhcCCHHHHHHHHHHHhhC----CCCCCHHHHHHHH
Q 008105 267 VCKQCGIARAIEVLDDMAIEGCSPDI-------VTYNSLV-NFSCKQGKYDDAVLVINNLLSR----GMEPNSITYNTLL 334 (577)
Q Consensus 267 ~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li-~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~ll 334 (577)
.....++++|..++.++...-..|+. ..|+.|- ......|+++.|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34568899999988887664222221 2344432 2344678889999888877654 1223455666777
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHH---HHHH--HHHHHcCCHH--HHHHHHHHHHHC---CCC---CCHHHHH
Q 008105 335 HSLGSRGCWDAVDKILDIMNEASHSPTVFTY---NILI--NGLCKYGLVD--RAINSFNQMVSK---NCQ---PDIVTYN 401 (577)
Q Consensus 335 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~li--~~~~~~g~~~--~A~~~~~~m~~~---~~~---~~~~~~~ 401 (577)
.+..-.|++++|..+..+..+....-+...+ ..+. ..+...|+.. +....|...... ..+ +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7778889999999888776654222333333 2222 2344556332 333334333322 111 1223444
Q ss_pred HHHHHHHhc-CChhHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHH
Q 008105 402 TVLGALCKE-GMLNEALQLLHLLNGSSCSPCLITY--NTLIDGLAKKGCMEKAMVLYGQMMENGISP----DDITHRTLI 474 (577)
Q Consensus 402 ~li~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~li 474 (577)
.++.++.+. +...++..-+..-......|-...+ ..|+......|++++|...++++......+ +..+-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 455555541 1122222222222222222222222 356777888999999999999987633222 322222222
Q ss_pred HH--HHhcCCHHHHHHHHHH
Q 008105 475 WG--FCRADQVEEAVDLLKE 492 (577)
Q Consensus 475 ~~--~~~~g~~~~A~~~~~~ 492 (577)
.. ....|+.+.+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 22 2356788777776665
No 351
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=71.53 E-value=10 Score=21.82 Aligned_cols=27 Identities=7% Similarity=0.090 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHH
Q 008105 119 TNNKILQNFCSRGKLTDASKLIDIMAR 145 (577)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~l~~~~~~ 145 (577)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666666666666666554
No 352
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=70.41 E-value=8.2 Score=21.92 Aligned_cols=19 Identities=11% Similarity=0.260 Sum_probs=7.9
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 008105 161 GLIRIDRIEKASKVLQIMV 179 (577)
Q Consensus 161 ~~~~~g~~~~A~~~~~~~~ 179 (577)
++.+.|++++|.+.|++++
T Consensus 9 ~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHH
Confidence 3333444444444444443
No 353
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.29 E-value=60 Score=30.14 Aligned_cols=87 Identities=8% Similarity=-0.024 Sum_probs=38.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 008105 124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCK---- 199 (577)
Q Consensus 124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---- 199 (577)
|++++..+++.+++...-+--+.--+-...+...=|-.|.+.+++..+.++-...+...-..+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5666666666665554433222111111222222333455555555555555555443222223334444444432
Q ss_pred -cCChHHHHHHH
Q 008105 200 -RGQIRSAIALL 210 (577)
Q Consensus 200 -~g~~~~A~~~~ 210 (577)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 35555555444
No 354
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=70.11 E-value=41 Score=27.37 Aligned_cols=68 Identities=15% Similarity=0.332 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhh-CCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008105 464 SPDDITHRTLIWGFCRADQ---VEEAVDLLKEIGK-RGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISS 531 (577)
Q Consensus 464 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 531 (577)
.++..+-..+.+++.++.+ +.+.+.+++++.+ ....-.......+.-++.+.++++++.++++.+++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4566666667777776654 5566777777765 222222333344556677888888888888877753
No 355
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=69.15 E-value=55 Score=28.21 Aligned_cols=108 Identities=14% Similarity=0.123 Sum_probs=50.3
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHHH---hcCC-------HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 008105 133 LTDASKLIDIMARRNQIPDFHFCINLIRGLI---RIDR-------IEKASKVLQIMVMSGGVPD-TITYNMMVGGLCKRG 201 (577)
Q Consensus 133 ~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~---~~g~-------~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g 201 (577)
|+.|++.++.....+ +.|...++.-..++. +..+ +++|+.-|++.+... |+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~--P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN--PNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHH
Confidence 456666666655554 335555555444443 3333 334445555555443 33 345555666655433
Q ss_pred ----C-------hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 008105 202 ----Q-------IRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRK 251 (577)
Q Consensus 202 ----~-------~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 251 (577)
+ +++|.+.|++.... .|+..+|+.-+.... +|-+++.++.+.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 2 33444444444433 566666666555542 344555555444
No 356
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=69.08 E-value=1.1e+02 Score=29.47 Aligned_cols=81 Identities=10% Similarity=-0.072 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008105 394 QPDIVTYNTVLGALCKEGM------------LNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMEN 461 (577)
Q Consensus 394 ~~~~~~~~~li~~~~~~g~------------~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 461 (577)
+-|+.+|-.++..--..-. .+.-+.+++++.+.+ +.+...+..++..+.+..+.++..+.++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5567777766654322211 123334444444442 344444455555555555555555555555543
Q ss_pred CCCCCHHHHHHHHHH
Q 008105 462 GISPDDITHRTLIWG 476 (577)
Q Consensus 462 g~~p~~~~~~~li~~ 476 (577)
. +-+...|...+..
T Consensus 95 ~-~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 95 N-PGSPELWREYLDF 108 (321)
T ss_pred C-CCChHHHHHHHHH
Confidence 1 1134444444443
No 357
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.75 E-value=1.7e+02 Score=31.46 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=11.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh
Q 008105 298 LVNFSCKQGKYDDAVLVINNLL 319 (577)
Q Consensus 298 li~~~~~~g~~~~A~~~~~~m~ 319 (577)
|+..|...+++..|..++-...
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 5555555555555555554443
No 358
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.35 E-value=75 Score=29.57 Aligned_cols=128 Identities=9% Similarity=0.033 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcC-----CCCCh--------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRN-----QIPDF--------HFCINLIRGLIRIDRIEKASKVLQIMVMSGGV 184 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-----~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 184 (577)
.....-.+-+.-..+|..|++.-++-.+.- ...+. ..+..=|.+++..+++.++..+.-+--+.--+
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEk 115 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEK 115 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCccc
Confidence 334444444555566666666655544321 01111 11223467788888887776654444332112
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-----hCCChHHHHHHH
Q 008105 185 PDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMF-----DNGKFKQAIGFW 245 (577)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~-----~~~~~~~A~~~~ 245 (577)
........-|-.|.|.|.+..+.++-..-.+.--..+...|.+++..|. -.|.+++|+++.
T Consensus 116 lPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 116 LPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 2334455556667788888777777666554321233444665555443 367777777665
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.99 E-value=19 Score=26.02 Aligned_cols=47 Identities=11% Similarity=0.091 Sum_probs=28.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 008105 514 KSKKVDMAIQVLELMISSRYKPD--DTVFSTIVKKVADDGMTEEAYKLW 560 (577)
Q Consensus 514 ~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 560 (577)
...+.++|+..|+..++.-..|. -.++..|+.+++..|+++++.++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777765422222 234566677777777777766653
No 360
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=67.53 E-value=1.5e+02 Score=30.19 Aligned_cols=394 Identities=11% Similarity=0.062 Sum_probs=203.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008105 114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRG-LIRIDRIEKASKVLQIMVMSGGVPDTITYNM 192 (577)
Q Consensus 114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 192 (577)
..|+..|...+.-+-+.+.+.+...+|.+|...++ .++..|-.-..- |-..-+++.|+.+|...++.+ +.++..|-.
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp-~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~Lw~e 179 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHP-NNPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKLWKE 179 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHHHHH
Confidence 34899999999988888889999999999998743 245555443322 233344899999999988875 334455544
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCC---------HHHHHHHH------HHHHhC---------CChHHHH-HHHHH
Q 008105 193 MVGGLCKRGQIRSAIALLDEMSVSGCEPD---------VITYNTIL------RTMFDN---------GKFKQAI-GFWKD 247 (577)
Q Consensus 193 li~~~~~~g~~~~A~~~~~~~~~~g~~~~---------~~~~~~li------~~~~~~---------~~~~~A~-~~~~~ 247 (577)
..+.-.. .+.++..+=...|...+ ...|+... ....+. ....+-. .+.+.
T Consensus 180 yfrmEL~-----~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~ 254 (568)
T KOG2396|consen 180 YFRMELM-----YAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDD 254 (568)
T ss_pred HHHHHHH-----HHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHH
Confidence 3332111 01111111000000000 00011000 000000 0111111 11112
Q ss_pred HHHCCCCCCHHHHHHHHH----HHHH---------------cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--
Q 008105 248 QLRKGCPPYLITYTILIE----QVCK---------------QCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQG-- 306 (577)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~----~~~~---------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 306 (577)
+. .+.+.|+.++..+.. .+.+ .-+-+....+|++.... -|+...|+..|..|...-
T Consensus 255 ~~-~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~ 331 (568)
T KOG2396|consen 255 LQ-SKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTF 331 (568)
T ss_pred Hh-ccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHh
Confidence 22 223444444433222 1111 01123334566666543 456667777777665432
Q ss_pred ----CHHHHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CH
Q 008105 307 ----KYDDAVLVINNLLSR-GMEPN-SITYNTLLHSLGSRGC-WDAVDKILDIMNEASHSPTVFTYNILINGLCKYG-LV 378 (577)
Q Consensus 307 ----~~~~A~~~~~~m~~~-g~~p~-~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~ 378 (577)
.......+++..... +..++ ...|..+.-.+..... .+.|..+..+.. ..+...|-.-+....... +.
T Consensus 332 ~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f----~~s~k~~~~kl~~~~~s~sD~ 407 (568)
T KOG2396|consen 332 LRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELF----RDSGKMWQLKLQVLIESKSDF 407 (568)
T ss_pred hhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHh----cchHHHHHHHHHHHHhhcchh
Confidence 334444555554443 23333 3355555555555443 333444443333 345555655555444321 21
Q ss_pred H-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHH--HHHHHHhhCCCCCCHHHH-HHHHHHHHhcCCHHHHHH
Q 008105 379 D-RAINSFNQMVSKNCQPDIVTYNTVLGALCKEGM-LNEAL--QLLHLLNGSSCSPCLITY-NTLIDGLAKKGCMEKAMV 453 (577)
Q Consensus 379 ~-~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~--~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~ 453 (577)
+ .-.++|......-..+....|+... .++ +.... .++......+ .|+..++ +.+++-+-+.|-.++|..
T Consensus 408 q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark 481 (568)
T KOG2396|consen 408 QMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVI-GADSVTLKSKYLDWAYESGGYKKARK 481 (568)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhc-CCceeehhHHHHHHHHHhcchHHHHH
Confidence 1 1122333333322233444444443 222 22211 1222333333 4555554 567788888999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHhh-CCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105 454 LYGQMMENGISPDDITHRTLIWGFCR--ADQVEEAVDLLKEIGK-RGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 454 ~~~~m~~~g~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 530 (577)
++..+... .+|+...|..+++.-.. +-+..-+.++++.|.. .| .++..|...+..-...|..+.+-.++.++.+
T Consensus 482 ~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 482 VYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 99999875 35677888888865332 2347788899999876 56 5777787777777788998888888777665
No 361
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=66.63 E-value=11 Score=20.52 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105 540 FSTIVKKVADDGMTEEAYKLWQKLIE 565 (577)
Q Consensus 540 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (577)
|..+...+...|++++|...+++.++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33444455555555555555555544
No 362
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=66.54 E-value=46 Score=26.66 Aligned_cols=45 Identities=13% Similarity=0.205 Sum_probs=28.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105 451 AMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGK 495 (577)
Q Consensus 451 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 495 (577)
..+-+......++.|++.....-+.+|.+-+++..|.++|+-+..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444555555666666666666666666666666666666654
No 363
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=65.44 E-value=1.7e+02 Score=29.98 Aligned_cols=179 Identities=11% Similarity=0.060 Sum_probs=120.5
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105 289 SPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNIL 368 (577)
Q Consensus 289 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 368 (577)
..|.....+++..+..+.+..-...+..+|...| -+...+..++.+|... ..+....+++++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 3466677888999999999999999999999874 3677888999999888 668888999988887643 44444555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHHHHHHHHHH
Q 008105 369 INGLCKYGLVDRAINSFNQMVSKNCQP-----DIVTYNTVLGALCKEGMLNEALQLLHLLNGS-SCSPCLITYNTLIDGL 442 (577)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~ 442 (577)
...|-+ ++...+...|.++...-++. -...|.-+...- ..+.+..+.+...+... |...-.+.+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 555555 88888999998887652221 122444444322 24566666666666543 2233345555566777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008105 443 AKKGCMEKAMVLYGQMMENGISPDDITHRTLIW 475 (577)
Q Consensus 443 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 475 (577)
....++.+|++++..+.+.. ..|...-..++.
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 78888888888888887754 234443334443
No 364
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.94 E-value=97 Score=27.16 Aligned_cols=89 Identities=16% Similarity=0.135 Sum_probs=51.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH-----HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008105 299 VNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNT-----LLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLC 373 (577)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-----ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 373 (577)
...+...+++++|..-++..... |....+.. |.+.....|.+|+|...++.....+. .......-.+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 34566777777777777766543 12222222 33455667777777777776655331 1222333456667
Q ss_pred HcCCHHHHHHHHHHHHHCC
Q 008105 374 KYGLVDRAINSFNQMVSKN 392 (577)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~~ 392 (577)
..|+-++|..-|.+.+..+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7777777777777776653
No 365
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=63.55 E-value=1.3e+02 Score=28.21 Aligned_cols=58 Identities=5% Similarity=0.048 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCCHHHH
Q 008105 254 PPYLITYTILIEQVCKQCGIARAIEVLDDMAIE-GCSPDIVTYNSLVNFSCKQGKYDDA 311 (577)
Q Consensus 254 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A 311 (577)
.++..+...++..+++.+++..-.++++..... +...|...|..+|....+.|+..-.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~ 257 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVM 257 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHH
Confidence 344444444555555555555555555444433 2333444555555555555554433
No 366
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.37 E-value=1.6e+02 Score=29.21 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=30.6
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 008105 407 LCKEGMLNEALQLLHLLNGSSCSPCLI--TYNTLIDGLA--KKGCMEKAMVLYGQMME 460 (577)
Q Consensus 407 ~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~~ 460 (577)
+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34566777777777777665 444433 3444444444 34566667776666654
No 367
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=63.09 E-value=97 Score=26.79 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008105 309 DDAVLVINNLLSRGMEPNSITYNTLLHSL 337 (577)
Q Consensus 309 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 337 (577)
++|...|++..+. +|+...|+.-+...
T Consensus 97 ~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 97 EKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 3444444444443 56666666555544
No 368
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.68 E-value=1.7e+02 Score=29.30 Aligned_cols=75 Identities=16% Similarity=0.152 Sum_probs=32.8
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHh--hHHHHHHHHHhcCCH
Q 008105 233 FDNGKFKQAIGFWKDQLRKGCPPYLIT--YTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIV--TYNSLVNFSCKQGKY 308 (577)
Q Consensus 233 ~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~ 308 (577)
+..|+.+-+ +.+++.|..|+... ..+.+...+..|+.+- .+.+.+.|..|+.. ...+.+...+..|+.
T Consensus 10 ~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 345555443 33444565555432 2233344455565543 23333444444322 112334445556665
Q ss_pred HHHHHHH
Q 008105 309 DDAVLVI 315 (577)
Q Consensus 309 ~~A~~~~ 315 (577)
+.+..++
T Consensus 82 ~~v~~Ll 88 (413)
T PHA02875 82 KAVEELL 88 (413)
T ss_pred HHHHHHH
Confidence 5544433
No 369
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=62.03 E-value=2.4e+02 Score=30.71 Aligned_cols=97 Identities=7% Similarity=0.066 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLI---RIDRIEKASKVLQIMVMSGGVPDTITYNM 192 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 192 (577)
+...+..||..+.+.|++++...--..|.+. .+.++..|...+.... ..+...++..+|++.+..-. ++..|.-
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~--~v~iw~e 188 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN--SVPIWEE 188 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--cchHHHH
Confidence 4456778888899999988877777777665 3446666666554433 34677778888888775532 3444444
Q ss_pred HHHHHH-------hcCChHHHHHHHHHHhh
Q 008105 193 MVGGLC-------KRGQIRSAIALLDEMSV 215 (577)
Q Consensus 193 li~~~~-------~~g~~~~A~~~~~~~~~ 215 (577)
.++.+. +.++++....+|.+...
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHh
Confidence 444333 34566777777777653
No 370
>PF13934 ELYS: Nuclear pore complex assembly
Probab=60.37 E-value=1.3e+02 Score=27.22 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=10.5
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 008105 193 MVGGLCKRGQIRSAIALLDEM 213 (577)
Q Consensus 193 li~~~~~~g~~~~A~~~~~~~ 213 (577)
++.++...|+.+.|..++..+
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 444444455555555555443
No 371
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=60.06 E-value=1.9e+02 Score=28.80 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=42.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChh--hHHHHHHHHH--hcCCHHHHHHHHHHHHhC
Q 008105 122 KILQNFCSRGKLTDASKLIDIMARRNQIPDFH--FCINLIRGLI--RIDRIEKASKVLQIMVMS 181 (577)
Q Consensus 122 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~~~~~ 181 (577)
..+..+.+.+++..|.++|+.+.++ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3345566899999999999999987 555554 3444555554 456788899999887654
No 372
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=59.28 E-value=2.6e+02 Score=30.15 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=10.9
Q ss_pred HhcCChHHHHHHHHHHHH
Q 008105 513 CKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 513 ~~~g~~~~A~~~~~~m~~ 530 (577)
.-++++.+|.+.-+.|.+
T Consensus 377 VLAnd~~kaiqAae~mfK 394 (1226)
T KOG4279|consen 377 VLANDYQKAIQAAEMMFK 394 (1226)
T ss_pred hhccCHHHHHHHHHHHhc
Confidence 345666666666666654
No 373
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=58.52 E-value=42 Score=21.63 Aligned_cols=34 Identities=6% Similarity=0.185 Sum_probs=20.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008105 512 LCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVK 545 (577)
Q Consensus 512 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 545 (577)
..+.|-.+++..++++|.+.|+.-+...+..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666666666666666666666666655543
No 374
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=58.52 E-value=82 Score=24.17 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=24.4
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 008105 197 LCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKG 252 (577)
Q Consensus 197 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 252 (577)
+...|++++|..+.+.+. .||...|.+|-.. +.|..+++..-+.++..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~~----~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKLC----YPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCCC----CchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 445556666655555442 4555555444332 3444444444444444443
No 375
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.30 E-value=59 Score=28.57 Aligned_cols=31 Identities=16% Similarity=0.016 Sum_probs=19.4
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008105 499 KMRNSAYRLVIHGLCKSKKVDMAIQVLELMI 529 (577)
Q Consensus 499 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 529 (577)
.|+...|..++.++...|+.++|.+..+++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666666666666666666666665
No 376
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=58.15 E-value=1.7e+02 Score=27.65 Aligned_cols=150 Identities=12% Similarity=-0.009 Sum_probs=76.8
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 008105 339 SRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCK----YGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCK----E 410 (577)
Q Consensus 339 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~ 410 (577)
..+++..+...+......+. ......+...|.. ..+..+|.+.|....+.| .+.....+...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcc
Confidence 45667777777777766432 2334444444443 344667777777666655 33333344444443 2
Q ss_pred CChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 008105 411 GMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKG-------CMEKAMVLYGQMMENGISPDDITHRTLIWGFCR---- 479 (577)
Q Consensus 411 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---- 479 (577)
.+..+|...++...+.|..+...+...+...|.... +...|...+.++-..+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 366777777777777663332222333333333321 2225666666665554 33333333333322
Q ss_pred cCCHHHHHHHHHHHhhCC
Q 008105 480 ADQVEEAVDLLKEIGKRG 497 (577)
Q Consensus 480 ~g~~~~A~~~~~~m~~~~ 497 (577)
..+.++|...|++..+.|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 224556666666665554
No 377
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.34 E-value=19 Score=24.72 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 008105 505 YRLVIHGLCKSKKVDMAIQVLELMI 529 (577)
Q Consensus 505 ~~~li~~~~~~g~~~~A~~~~~~m~ 529 (577)
--.+|.++...|++++|.++++++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445666666666666666666554
No 378
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=56.67 E-value=73 Score=24.03 Aligned_cols=53 Identities=23% Similarity=0.119 Sum_probs=26.2
Q ss_pred HhcCCHHHHHHHHHHHhh----CCCCc----cHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105 478 CRADQVEEAVDLLKEIGK----RGNKM----RNSAYRLVIHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 478 ~~~g~~~~A~~~~~~m~~----~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 530 (577)
.+.|++.+|.+.+.+..+ .+... -....-.+.......|++++|.+.+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356667666555555433 11111 011222234445556666666666666653
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.40 E-value=44 Score=24.29 Aligned_cols=19 Identities=11% Similarity=0.041 Sum_probs=8.3
Q ss_pred HHHHHHHHHhcCChHHHHH
Q 008105 505 YRLVIHGLCKSKKVDMAIQ 523 (577)
Q Consensus 505 ~~~li~~~~~~g~~~~A~~ 523 (577)
+..++.+++..|+++++++
T Consensus 46 lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 380
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=54.74 E-value=1.9e+02 Score=27.32 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHccCCHHHH
Q 008105 328 ITYNTLLHSLGSRGCWDAV 346 (577)
Q Consensus 328 ~~~~~ll~~~~~~g~~~~a 346 (577)
.+|.-|+.+++..|+.+..
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3566777777777776544
No 381
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=54.58 E-value=1.4e+02 Score=26.80 Aligned_cols=91 Identities=14% Similarity=0.123 Sum_probs=45.5
Q ss_pred HHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCH-------HHHHHHHHHHhhCCCCc----cH-
Q 008105 441 GLAKKGCMEKAMVLYGQMME----NGISPD--DITHRTLIWGFCRADQV-------EEAVDLLKEIGKRGNKM----RN- 502 (577)
Q Consensus 441 ~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~li~~~~~~g~~-------~~A~~~~~~m~~~~~~~----~~- 502 (577)
-+.....+++|.+.|.-+.- .+-+|. ...+.-+.+.|-..|+- ..|.+.|.+..+..-.| +.
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 34555567777776665532 222333 23344555556556653 34455555544322111 11
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008105 503 SAYRLVIHGLCKSKKVDMAIQVLELMISS 531 (577)
Q Consensus 503 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 531 (577)
...-.+.....+.|+.++|.+.|.+++..
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 22223444455677777777777777654
No 382
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.51 E-value=59 Score=28.56 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105 464 SPDDITHRTLIWGFCRADQVEEAVDLLKEIGK 495 (577)
Q Consensus 464 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 495 (577)
.|+...|..++.++...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555566556666666666666555555554
No 383
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=54.39 E-value=1.5e+02 Score=26.70 Aligned_cols=99 Identities=18% Similarity=0.197 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHH
Q 008105 429 SPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISP---DDITH--RTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNS 503 (577)
Q Consensus 429 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 503 (577)
.+...-+|.|+--|.-...+.+|.+.|.. +.|+.| |..++ ..-|......|++++|.+.....-..-+..|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 44555566666666655556666665544 334444 33333 344556677888888888877764322233322
Q ss_pred HHHHH----HHHHHhcCChHHHHHHHHHHH
Q 008105 504 AYRLV----IHGLCKSKKVDMAIQVLELMI 529 (577)
Q Consensus 504 ~~~~l----i~~~~~~g~~~~A~~~~~~m~ 529 (577)
.+-.+ +--+.+.|..++|+++.+.=.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 22111 112456777777777776544
No 384
>PRK11619 lytic murein transglycosylase; Provisional
Probab=53.92 E-value=3.2e+02 Score=29.54 Aligned_cols=115 Identities=9% Similarity=-0.033 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHcC-CCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 008105 271 CGIARAIEVLDDMAIEG-CSPD--IVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVD 347 (577)
Q Consensus 271 g~~~~A~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 347 (577)
.+.+.|..++....... ..+. ...+..+.......+...+|...++...... .+......-+......++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 34466666666653322 1111 1223333333333322344545444433221 12223333333444566666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008105 348 KILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQM 388 (577)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 388 (577)
..+..|....- ....-.--+..++...|+.++|...|+.+
T Consensus 333 ~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 333 TWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666543221 12223334455555566667776666665
No 385
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=52.49 E-value=28 Score=23.08 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=9.6
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 008105 546 KVADDGMTEEAYKLWQKLIE 565 (577)
Q Consensus 546 ~~~~~g~~~~A~~~~~~~~~ 565 (577)
++.+.|++++|.++.+.+++
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 44455555555555555554
No 386
>PHA02875 ankyrin repeat protein; Provisional
Probab=50.84 E-value=2.7e+02 Score=27.89 Aligned_cols=212 Identities=13% Similarity=0.099 Sum_probs=102.3
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHH--HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHc
Q 008105 195 GGLCKRGQIRSAIALLDEMSVSGCEPDVIT--YNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLI--TYTILIEQVCKQ 270 (577)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 270 (577)
...++.|+.+-+..++ +.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...++.
T Consensus 7 ~~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 3345667775554444 5676666543 334555666777765 344555667655533 122345566778
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH--HHHHHHHHHccCCHHHHHH
Q 008105 271 CGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSIT--YNTLLHSLGSRGCWDAVDK 348 (577)
Q Consensus 271 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~a~~ 348 (577)
|+.+.+..+++.-....-..+..- .+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+.+..
T Consensus 79 g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 79 GDVKAVEELLDLGKFADDVFYKDG-MTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred CCHHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 888776655543211100011111 23344455666654 4455556666654321 1233444556677665554
Q ss_pred HHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChhHHHHHHHH
Q 008105 349 ILDIMNEASHSPT---VFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVT---YNTVLGALCKEGMLNEALQLLHL 422 (577)
Q Consensus 349 ~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~ 422 (577)
+++ .|..++ ..-.+.+. ..+..|+.+ +.+.+.+.|..++... ..+.+...+..|+.+ +.+.
T Consensus 154 Ll~----~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~ 220 (413)
T PHA02875 154 LID----HKACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRL 220 (413)
T ss_pred HHh----cCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHH
Confidence 443 333222 22223333 334455544 3344455555444322 123344344555543 3344
Q ss_pred HhhCCCCCCH
Q 008105 423 LNGSSCSPCL 432 (577)
Q Consensus 423 ~~~~~~~p~~ 432 (577)
+.+.|..++.
T Consensus 221 Ll~~gad~n~ 230 (413)
T PHA02875 221 FIKRGADCNI 230 (413)
T ss_pred HHHCCcCcch
Confidence 4555655553
No 387
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=50.50 E-value=1.5e+02 Score=24.70 Aligned_cols=81 Identities=10% Similarity=0.208 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCccHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008105 470 HRTLIWGFCRADQVEEAVDLLKEIGKRG-----NKMRNSAYRLVIHGLCKSKK-VDMAIQVLELMISSRYKPDDTVFSTI 543 (577)
Q Consensus 470 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l 543 (577)
.+.++......++......+++.+.... -..+...|.+++.+.+...- ---+..+|.-|.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3444444444445554444444442210 02244456666666655444 23455556666655666677777777
Q ss_pred HHHHHhc
Q 008105 544 VKKVADD 550 (577)
Q Consensus 544 ~~~~~~~ 550 (577)
+.++.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7666554
No 388
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=49.80 E-value=1.1e+02 Score=23.12 Aligned_cols=54 Identities=19% Similarity=0.119 Sum_probs=31.8
Q ss_pred HhcCCHHHHHHHHHHHHH----CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105 443 AKKGCMEKAMVLYGQMME----NGISPD----DITHRTLIWGFCRADQVEEAVDLLKEIGKR 496 (577)
Q Consensus 443 ~~~g~~~~A~~~~~~m~~----~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 496 (577)
.+.|++.+|.+.+.+..+ .+.... ......+.......|+.++|.+.+++..+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 467788888665555543 222221 122233445566778888888888877764
No 389
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=49.64 E-value=52 Score=22.59 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=12.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 008105 297 SLVNFSCKQGKYDDAVLVINNLL 319 (577)
Q Consensus 297 ~li~~~~~~g~~~~A~~~~~~m~ 319 (577)
.+|.++...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555666666666665555544
No 390
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=48.18 E-value=3.8e+02 Score=28.76 Aligned_cols=413 Identities=12% Similarity=0.133 Sum_probs=208.6
Q ss_pred CCHHHHHHHHHHHH-hcCChhhHHHHHHHHHHcCCCCChh-----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----
Q 008105 115 NDEKTNNKILQNFC-SRGKLTDASKLIDIMARRNQIPDFH-----FCINLIRGLIRIDRIEKASKVLQIMVMSGGV---- 184 (577)
Q Consensus 115 ~~~~~~~~li~~~~-~~g~~~~A~~l~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~---- 184 (577)
.+..++-.+.+.|. ...++++|+..+++.....-.++.. .-..++..+.+.+... |...+++.++.--.
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 45567778888887 6779999999999876543332222 1123455555555555 88888887654211
Q ss_pred CCHHHHHHH-HHHHHhcCChHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHH--hCCChHHHHHHHHHHHHCC------
Q 008105 185 PDTITYNMM-VGGLCKRGQIRSAIALLDEMSVSG---CEPDVITYNTILRTMF--DNGKFKQAIGFWKDQLRKG------ 252 (577)
Q Consensus 185 ~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~li~~~~--~~~~~~~A~~~~~~~~~~~------ 252 (577)
+-...+..+ +..+...+++..|.+.++.+...- ..|-..++-.++.+.. +.+..+++.+..+++....
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~ 215 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLD 215 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccC
Confidence 112223333 333334479999999998876432 1444555555665554 3565677777777664321
Q ss_pred ---CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH-------cC-C---C-------------------CCHhhH--
Q 008105 253 ---CPPYLITYTILIEQVC--KQCGIARAIEVLDDMAI-------EG-C---S-------------------PDIVTY-- 295 (577)
Q Consensus 253 ---~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~-------~~-~---~-------------------~~~~~~-- 295 (577)
..|-..+|..+++.++ ..|+++.+.+.++++.. .. . . +....|
T Consensus 216 ~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~ 295 (608)
T PF10345_consen 216 PSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLP 295 (608)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecC
Confidence 2345667777776554 56776666666555432 10 0 0 111111
Q ss_pred -------HHHHHH--HHhcCCHHHHHHH-------HHHHh-hCCCCCCH--------HHHHHHHH---------HHHccC
Q 008105 296 -------NSLVNF--SCKQGKYDDAVLV-------INNLL-SRGMEPNS--------ITYNTLLH---------SLGSRG 341 (577)
Q Consensus 296 -------~~li~~--~~~~g~~~~A~~~-------~~~m~-~~g~~p~~--------~~~~~ll~---------~~~~~g 341 (577)
.-++.+ .+..+..++|.+. .++.. .....+.. ..|...+. ..+-.+
T Consensus 296 ~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~ 375 (608)
T PF10345_consen 296 KEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRG 375 (608)
T ss_pred HHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCc
Confidence 111222 2333444355444 44444 11111111 12222221 224578
Q ss_pred CHHHHHHHHHHHHhCCCC-C-----CHHHHHHHHH--HHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHH
Q 008105 342 CWDAVDKILDIMNEASHS-P-----TVFTYNILIN--GLCKYGLVDRAINSFN--------QMVSKNCQPDIVTYNTVLG 405 (577)
Q Consensus 342 ~~~~a~~~~~~~~~~~~~-~-----~~~~~~~li~--~~~~~g~~~~A~~~~~--------~m~~~~~~~~~~~~~~li~ 405 (577)
++..+...++.+.+.... | ....+...+. .+-..|+.+.|...|. .....+...+...+..+=.
T Consensus 376 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl 455 (608)
T PF10345_consen 376 DWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNL 455 (608)
T ss_pred CHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHH
Confidence 899999999988754211 1 1122223332 3345799999999997 4444444444444433211
Q ss_pred --HHH--hcCChhH--HHHHHHHHhhC---CCCCCHHHHHHH-HHHHHhcCC--HHHHHHHHHHHHH-C--CCCCC---H
Q 008105 406 --ALC--KEGMLNE--ALQLLHLLNGS---SCSPCLITYNTL-IDGLAKKGC--MEKAMVLYGQMME-N--GISPD---D 467 (577)
Q Consensus 406 --~~~--~~g~~~~--A~~~~~~~~~~---~~~p~~~~~~~l-i~~~~~~g~--~~~A~~~~~~m~~-~--g~~p~---~ 467 (577)
.+. .....++ +..+++.+... ....+..++..+ +.++..... ..++...+.+..+ . ....+ .
T Consensus 456 ~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~ 535 (608)
T PF10345_consen 456 AIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLA 535 (608)
T ss_pred HHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHH
Confidence 111 1222333 67777766552 112233334433 333332211 2244444333322 1 01111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCCccHHHHHH-----HHHHHHhcCChHHHHHHHHHHH
Q 008105 468 ITHRTLIWGFCRADQVEEAVDLLKEIGK---RGNKMRNSAYRL-----VIHGLCKSKKVDMAIQVLELMI 529 (577)
Q Consensus 468 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~ 529 (577)
.+++.+..-+. .|+..+..+....... ....-....|.. +.+.+-..|+.++|.....+..
T Consensus 536 ~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 536 ILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 12333333333 6787776666555332 111113345533 3344777899999999888765
No 391
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=47.93 E-value=2.7e+02 Score=26.94 Aligned_cols=79 Identities=8% Similarity=-0.057 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---CCChHHHHHHH
Q 008105 169 EKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD---NGKFKQAIGFW 245 (577)
Q Consensus 169 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---~~~~~~A~~~~ 245 (577)
+.-+.++++.++.+ +.+...+..++..+.+..+.++..+.++++.... +-+...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 44566677766664 3556666667777777777777777777776653 2356666666655443 22345555555
Q ss_pred HHHH
Q 008105 246 KDQL 249 (577)
Q Consensus 246 ~~~~ 249 (577)
.+.+
T Consensus 126 ~~~l 129 (321)
T PF08424_consen 126 EKCL 129 (321)
T ss_pred HHHH
Confidence 5443
No 392
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.11 E-value=76 Score=20.42 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=13.2
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 008105 199 KRGQIRSAIALLDEMSVSGCEPDVITYNTI 228 (577)
Q Consensus 199 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 228 (577)
+.|-..++..++++|.+.|+.-+...+..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 334444444444444444444444444333
No 393
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=46.91 E-value=1e+02 Score=31.92 Aligned_cols=100 Identities=18% Similarity=0.076 Sum_probs=53.8
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 008105 338 GSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEAL 417 (577)
Q Consensus 338 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 417 (577)
...|+...|.+.+.........-..+....|.+...+.|..-+|-.++.+.+... ...+-++..+.+++....+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 4456666666665554433222222333444555555566666666666655543 334455556666666666777777
Q ss_pred HHHHHHhhCCCCCCHHHHHHHH
Q 008105 418 QLLHLLNGSSCSPCLITYNTLI 439 (577)
Q Consensus 418 ~~~~~~~~~~~~p~~~~~~~li 439 (577)
+.|++..+.. +.+...-+.|.
T Consensus 697 ~~~~~a~~~~-~~~~~~~~~l~ 717 (886)
T KOG4507|consen 697 EAFRQALKLT-TKCPECENSLK 717 (886)
T ss_pred HHHHHHHhcC-CCChhhHHHHH
Confidence 7776666554 33344444443
No 394
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.62 E-value=1.4e+02 Score=31.48 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=53.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 008105 122 KILQNFCSRGKLTDASKLIDIMARRN--QIPDFHFCINLIRGLIRIDRIE------KASKVLQIMVMSGGVPDTITYNMM 193 (577)
Q Consensus 122 ~li~~~~~~g~~~~A~~l~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~g~~~~~~~~~~l 193 (577)
+|..+|..+|++..+.++++.....+ -+.=...+|..|+..++.|.++ .|.++++... +.-|.-||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 88999999999999999999887642 2223456788888888888764 3555555554 34477788777
Q ss_pred HHHHHh
Q 008105 194 VGGLCK 199 (577)
Q Consensus 194 i~~~~~ 199 (577)
+++-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766543
No 395
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=46.28 E-value=3.4e+02 Score=27.70 Aligned_cols=37 Identities=8% Similarity=-0.111 Sum_probs=25.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008105 441 GLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFC 478 (577)
Q Consensus 441 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 478 (577)
.|...|++-.|.+.|.+.... +..++..|-.|..+|.
T Consensus 344 ~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 344 LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 456677777777777776653 3456677777777765
No 396
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=45.95 E-value=1.7e+02 Score=24.26 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=20.2
Q ss_pred HHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008105 329 TYNTLLHSLGSRGC-WDAVDKILDIMNEASHSPTVFTYNILINGLCK 374 (577)
Q Consensus 329 ~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 374 (577)
.|..++.+.++... --.+..+|..+.+.+.+.++.-|..++.++.+
T Consensus 81 sf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 81 SFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred hHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 44444444433333 22334444444444444444445444444443
No 397
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=45.53 E-value=1.4e+02 Score=23.20 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 008105 342 CWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLH 421 (577)
Q Consensus 342 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 421 (577)
..++|..+.+-+...+. ....+--+-+..+.+.|++++|+ ..-.. ...||...|.++- -.+.|..+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l~~~~-~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---LLPQC-HCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---HHHTT-S--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---Hhccc-CCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 35556666655555432 12222222334455566666661 11111 1245555554443 235555556655555
Q ss_pred HHhhCC
Q 008105 422 LLNGSS 427 (577)
Q Consensus 422 ~~~~~~ 427 (577)
.+..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 555554
No 398
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=45.21 E-value=2.6e+02 Score=26.04 Aligned_cols=102 Identities=11% Similarity=0.077 Sum_probs=42.5
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCChH
Q 008105 129 SRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIM----VMSGGVPDTITYNMMVGGLCKRGQIR 204 (577)
Q Consensus 129 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~ 204 (577)
+++++++|++++..-.. .+.+.|+...|-++-.-+ .+.+.+.|......++..+...+.-+
T Consensus 2 ~~kky~eAidLL~~Ga~---------------~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGAL---------------ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHHHHH---------------HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Confidence 45667777776644322 244455544443333222 23344555555455555544433211
Q ss_pred -HHHHHHHHHh---hCCC--CCCHHHHHHHHHHHHhCCChHHHHHHH
Q 008105 205 -SAIALLDEMS---VSGC--EPDVITYNTILRTMFDNGKFKQAIGFW 245 (577)
Q Consensus 205 -~A~~~~~~~~---~~g~--~~~~~~~~~li~~~~~~~~~~~A~~~~ 245 (577)
+-.++.+.+. +.|- .-|+.....+...|.+.+++.+|...|
T Consensus 67 p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 67 PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 1112222221 1111 124555566666667777766666543
No 399
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.29 E-value=1.6e+02 Score=25.55 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhCCCCCCH--H-----HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 008105 168 IEKASKVLQIMVMSGGVPDT--I-----TYNMMVGGLCKRGQIRSAIALLDEMSV 215 (577)
Q Consensus 168 ~~~A~~~~~~~~~~g~~~~~--~-----~~~~li~~~~~~g~~~~A~~~~~~~~~ 215 (577)
++.|+.+++.+.+.-..|.. . .-...+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 45566666666554322210 0 112233456666777777776666654
No 400
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=43.88 E-value=1.8e+02 Score=23.86 Aligned_cols=68 Identities=9% Similarity=0.099 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105 429 SPCLITYNTLIDGLAKKGC---MEKAMVLYGQMMENGI-SPDDITHRTLIWGFCRADQVEEAVDLLKEIGKR 496 (577)
Q Consensus 429 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 496 (577)
.++..+--.+.-++.+..+ ..+.+.++++..+... .-+......|.-++.+.++++.++++.+...+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4555555566666666553 5566777887775221 122334455566777888888888888877764
No 401
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.19 E-value=2.9e+02 Score=25.97 Aligned_cols=126 Identities=8% Similarity=0.034 Sum_probs=65.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHH-------HHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHH
Q 008105 122 KILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCIN-------LIRGLIRIDRIEKASKVLQIMVM----SGGVPDTITY 190 (577)
Q Consensus 122 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~-------li~~~~~~g~~~~A~~~~~~~~~----~g~~~~~~~~ 190 (577)
.+.+...+.+++++|+..+.+++..|+..+..+.|- +...|...|++..-.+......+ ..-+..+...
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 355667788899999999999998888766655443 55666777766554433322211 1112223334
Q ss_pred HHHHHHHHhc-CChHHHHHHHHHHhhCCCCCCH-----HHHHHHHHHHHhCCChHHHHHHHHH
Q 008105 191 NMMVGGLCKR-GQIRSAIALLDEMSVSGCEPDV-----ITYNTILRTMFDNGKFKQAIGFWKD 247 (577)
Q Consensus 191 ~~li~~~~~~-g~~~~A~~~~~~~~~~g~~~~~-----~~~~~li~~~~~~~~~~~A~~~~~~ 247 (577)
.+|+..+-.. ..++.-.++.....+...+-.. ..=.-++..+.+.|.+.+|+.+...
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4444444322 2344444444333322101111 1112355566667777776665443
No 402
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.17 E-value=3.3e+02 Score=26.61 Aligned_cols=232 Identities=15% Similarity=0.095 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HH
Q 008105 324 EPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDI----VT 399 (577)
Q Consensus 324 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~ 399 (577)
.|+..+.-.+++-|....+-+.....-..+.. +.+.+-.++.+.+.+...+.+..+.+.. +.|.. ..
T Consensus 72 ~~~~~~li~~~~~FV~~~n~eqlr~as~~f~~--------lc~~l~~~~~~~~~p~~gi~ii~~av~k-~~~~~~qlT~~ 142 (422)
T KOG2582|consen 72 NPDPETLIELLNDFVDENNGEQLRLASEIFFP--------LCHDLTEAVVKKNKPLRGIRIIMQAVDK-MQPSNGQLTSI 142 (422)
T ss_pred CCCHHHHHHHHHHHHHhcChHHHhhHHHHHHH--------HHHHHHHHHHhcCCccccchHHHHHHHH-hccCccchhhh
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCC------CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 008105 400 YNTVLGALCKEGMLNEALQLLHLLNGSS------CSPCLITYNTLIDGLA--KKGCMEKAMVLYGQMMENGISPDDITHR 471 (577)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 471 (577)
...++..+.+.+++..+...++.-.-.- .+|.....-..=.+|. ..++++.|+.+|...+-. |....-.
T Consensus 143 H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~---Pa~~vs~ 219 (422)
T KOG2582|consen 143 HADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT---PAMAVSH 219 (422)
T ss_pred HHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc---chhHHHH
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH-------------------hcCChHHHHHH
Q 008105 472 TLIWGFCR--------ADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLC-------------------KSKKVDMAIQV 524 (577)
Q Consensus 472 ~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-------------------~~g~~~~A~~~ 524 (577)
..+.+|-+ .|+....-+.-......-.+|-...|..+.++|. +.++..-|...
T Consensus 220 ~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~l~k~a 299 (422)
T KOG2582|consen 220 IHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTGLAKQA 299 (422)
T ss_pred HHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHHHHHHH
Q ss_pred HHHHHHCCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHcC
Q 008105 525 LELMISSRYKPDDTVFSTI----VKKVADDGMTEEAYKLWQKLIEWK 567 (577)
Q Consensus 525 ~~~m~~~~~~p~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~~ 567 (577)
+..+-++.+.-=..+|.+| +....+.+..++|.+..-+|.+.|
T Consensus 300 v~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 300 VSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
No 403
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=43.03 E-value=1.9e+02 Score=30.03 Aligned_cols=149 Identities=13% Similarity=0.082 Sum_probs=99.5
Q ss_pred CCCHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHcCCCCChhhHHHH--HHHHH-hcCCHHHHHHHHHHHHhCCCCCCHH
Q 008105 114 ENDEKTNNKILQNFCSRG--KLTDASKLIDIMARRNQIPDFHFCINL--IRGLI-RIDRIEKASKVLQIMVMSGGVPDTI 188 (577)
Q Consensus 114 ~~~~~~~~~li~~~~~~g--~~~~A~~l~~~~~~~~~~~~~~~~~~l--i~~~~-~~g~~~~A~~~~~~~~~~g~~~~~~ 188 (577)
-|+..+...++.-....- +-+-|-.+|-.|.+ |+...|..| ...|. ..|+...|...+....-..+...-+
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~----~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v 643 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK----PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDV 643 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC----CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcc
Confidence 466666666555444333 23345555655544 334444332 23333 5689999998888776543333334
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008105 189 TYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVC 268 (577)
Q Consensus 189 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 268 (577)
..-.|.+...+.|...+|-.++.+..... ...+.++..+.+++....+.+.|++.|++..+.. +.+...-+.|...-|
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 45567777888888889999888777654 4566778888899999999999999999998764 556667777766555
No 404
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=42.86 E-value=1.4e+02 Score=22.26 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=18.9
Q ss_pred hcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHH
Q 008105 479 RADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMA 521 (577)
Q Consensus 479 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 521 (577)
..|+.+.|.+++..+. .|.. .|...+.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEG----WFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCchhhh
Confidence 3455556666665555 3321 445555555555544333
No 405
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=42.85 E-value=3.5e+02 Score=26.84 Aligned_cols=55 Identities=16% Similarity=0.007 Sum_probs=37.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHH----HHHHHH--hcCCHHHHHHHHHH
Q 008105 123 ILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCIN----LIRGLI--RIDRIEKASKVLQI 177 (577)
Q Consensus 123 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~----li~~~~--~~g~~~~A~~~~~~ 177 (577)
.+..+.+.+++..|.++|+++.++..+|+...... +..+|. ..-++++|.+.++.
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34567888999999999999998866555443333 333433 34567888888875
No 406
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=42.82 E-value=2e+02 Score=24.97 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=9.8
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 008105 476 GFCRADQVEEAVDLLKEIGK 495 (577)
Q Consensus 476 ~~~~~g~~~~A~~~~~~m~~ 495 (577)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34455555555555554443
No 407
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.20 E-value=5.2e+02 Score=28.62 Aligned_cols=48 Identities=13% Similarity=0.256 Sum_probs=31.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008105 332 TLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQM 388 (577)
Q Consensus 332 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 388 (577)
+....+...|+.+....+-..+.+ |..++..+.+.+.+++|++++..-
T Consensus 509 tv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 509 TVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444556666666655554443 567777888888888888887654
No 408
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.77 E-value=52 Score=30.94 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008105 260 YTILIEQVCKQCGIARAIEVLDDMAIEGCS 289 (577)
Q Consensus 260 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 289 (577)
|+..|....+.||+++|++++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345566666666666666666666665543
No 409
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=41.68 E-value=3.1e+02 Score=25.85 Aligned_cols=153 Identities=12% Similarity=-0.048 Sum_probs=97.1
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---
Q 008105 302 SCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGS----RGCWDAVDKILDIMNEASHSPTVFTYNILINGLCK--- 374 (577)
Q Consensus 302 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 374 (577)
....+++..+...+......+ +......+...|.. ..+...|...+....+.|. ......|...|..
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~g 124 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRG 124 (292)
T ss_pred ccccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCC
Confidence 346677888888888887644 22344444444433 3467889999997777663 3344456666665
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--
Q 008105 375 -YGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEG-------MLNEALQLLHLLNGSSCSPCLITYNTLIDGLAK-- 444 (577)
Q Consensus 375 -~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-- 444 (577)
..+..+|...|++..+.|..+...+...+...|..-. +...|...+..+...+ +......+...|..
T Consensus 125 v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~ 201 (292)
T COG0790 125 VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGL 201 (292)
T ss_pred cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCC
Confidence 3488999999999999884433223444444444331 2336888888887776 34444445544433
Q ss_pred --cCCHHHHHHHHHHHHHCCC
Q 008105 445 --KGCMEKAMVLYGQMMENGI 463 (577)
Q Consensus 445 --~g~~~~A~~~~~~m~~~g~ 463 (577)
..+.++|...|....+.|.
T Consensus 202 Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 202 GVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CCCcCHHHHHHHHHHHHHCCC
Confidence 3477888888888888763
No 410
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=41.07 E-value=3.3e+02 Score=26.12 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=77.9
Q ss_pred CChhHHHHHHHHHhhCCCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 008105 411 GMLNEALQLLHLLNGSSCSP-------------CLITYNTLIDGLAKKGCMEKAMVLYGQMMEN-GISPDDITHRTLIWG 476 (577)
Q Consensus 411 g~~~~A~~~~~~~~~~~~~p-------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~ 476 (577)
++.+....++..+.+.+..| |...++.|..+ ...++++-.+..++..+. |-.--...+.....-
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeY 113 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEY 113 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 35566667777777776554 22222222221 111223333333333332 211223456667778
Q ss_pred HHhcCCHHHHHHHHHHHhh----CCCCccHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHH
Q 008105 477 FCRADQVEEAVDLLKEIGK----RGNKMRNSAYRLVIHG-LCKSKKVDMAIQVLELMISSRYKPDD----TVFSTIVKKV 547 (577)
Q Consensus 477 ~~~~g~~~~A~~~~~~m~~----~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~ 547 (577)
||+-|+.+.|.+.+.+..+ .|.+.|...+..-+.. |..+.-+.+-++..+.+.+.|-.-+. .+|..+- |
T Consensus 114 ycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~ 191 (393)
T KOG0687|consen 114 YCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--C 191 (393)
T ss_pred HHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--H
Confidence 8899999988888876543 5666676655433322 33333445555566666666654432 3444442 3
Q ss_pred HhcCCHHHHHHHHHHH
Q 008105 548 ADDGMTEEAYKLWQKL 563 (577)
Q Consensus 548 ~~~g~~~~A~~~~~~~ 563 (577)
....++.+|-.+|-..
T Consensus 192 msvR~Fk~Aa~Lfld~ 207 (393)
T KOG0687|consen 192 MSVRNFKEAADLFLDS 207 (393)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 3445677777766544
No 411
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.95 E-value=1.7e+02 Score=30.95 Aligned_cols=91 Identities=12% Similarity=0.212 Sum_probs=62.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChH------HHHHHHHHHhhCCCCCCHHHHHHH
Q 008105 157 NLIRGLIRIDRIEKASKVLQIMVMSG--GVPDTITYNMMVGGLCKRGQIR------SAIALLDEMSVSGCEPDVITYNTI 228 (577)
Q Consensus 157 ~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~g~~~~~~~~~~l 228 (577)
+++.+|...|++.++.++++.....+ -+.=...+|..|+...+.|.++ .|.++++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78999999999999999999998753 2233557888888899999764 3444554444 34578888888
Q ss_pred HHHHHhCCChHHHHHHHHHHHH
Q 008105 229 LRTMFDNGKFKQAIGFWKDQLR 250 (577)
Q Consensus 229 i~~~~~~~~~~~A~~~~~~~~~ 250 (577)
+.+-...-+-.-..-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8776553333333444444443
No 412
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.78 E-value=6.2e+02 Score=29.14 Aligned_cols=23 Identities=9% Similarity=0.055 Sum_probs=17.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHH
Q 008105 123 ILQNFCSRGKLTDASKLIDIMAR 145 (577)
Q Consensus 123 li~~~~~~g~~~~A~~l~~~~~~ 145 (577)
+..+|...|+..+|+..|.+...
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~S 948 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALS 948 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhh
Confidence 34457788888889888887654
No 413
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=40.78 E-value=1e+02 Score=20.36 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=10.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhC
Q 008105 300 NFSCKQGKYDDAVLVINNLLSR 321 (577)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~m~~~ 321 (577)
-++.+.|++++|.+..+.+++.
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhh
Confidence 3444555555555555555444
No 414
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=40.68 E-value=3.5e+02 Score=26.17 Aligned_cols=59 Identities=14% Similarity=0.159 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHhh
Q 008105 437 TLIDGLAKKGCMEKAMVLYGQMMEN---GISPDDITHR--TLIWGFCRADQVEEAVDLLKEIGK 495 (577)
Q Consensus 437 ~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~ 495 (577)
.++...-+.++.++|.++++++++. --.|+.+.|. .....+...|+..++.+.+.+..+
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3344445566777787777777642 2245555543 344455566777777777776655
No 415
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=40.40 E-value=1.2e+02 Score=20.90 Aligned_cols=18 Identities=11% Similarity=0.353 Sum_probs=8.6
Q ss_pred HhcCChhhHHHHHHHHHH
Q 008105 128 CSRGKLTDASKLIDIMAR 145 (577)
Q Consensus 128 ~~~g~~~~A~~l~~~~~~ 145 (577)
...|++-+|-++++.+-.
T Consensus 10 ~n~g~f~EaHEvlE~~W~ 27 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWK 27 (62)
T ss_dssp HHTT-HHHHHHHHHHHCC
T ss_pred HcCCCHHHhHHHHHHHHH
Confidence 344555555555555543
No 416
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=39.91 E-value=2.8e+02 Score=24.91 Aligned_cols=23 Identities=13% Similarity=-0.134 Sum_probs=13.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC
Q 008105 474 IWGFCRADQVEEAVDLLKEIGKR 496 (577)
Q Consensus 474 i~~~~~~g~~~~A~~~~~~m~~~ 496 (577)
.....+.|+.++|.+.|.++...
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHcC
Confidence 34445566666666666666553
No 417
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=39.04 E-value=30 Score=28.03 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105 341 GCWDAVDKILDIMNEASHSPTVFTYNILIN 370 (577)
Q Consensus 341 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 370 (577)
|.-..|-.+|..|.+.|.+||. |+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 4444555666666666655553 555544
No 418
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.01 E-value=60 Score=30.56 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 008105 190 YNMMVGGLCKRGQIRSAIALLDEMSVSGCEP 220 (577)
Q Consensus 190 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 220 (577)
|+..|....+.|++++|+.++++..+.|+.-
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 4567777777777777777777777766443
No 419
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.82 E-value=2.3e+02 Score=26.13 Aligned_cols=57 Identities=16% Similarity=0.105 Sum_probs=31.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105 507 LVIHGLCKSKKVDMAIQVLELMIS----SRY-KPDDTVFSTIVKKVADDGMTEEAYKLWQKL 563 (577)
Q Consensus 507 ~li~~~~~~g~~~~A~~~~~~m~~----~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 563 (577)
.+...|.+.|++++|.++|+.+.. .|. .+...+...+..+..+.|+.++...+.=+|
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 355556666666666666666542 122 233444555566666666666665554333
No 420
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=38.56 E-value=4.8e+02 Score=29.71 Aligned_cols=28 Identities=7% Similarity=0.156 Sum_probs=16.2
Q ss_pred HHHHHHHHHHccC--CHHHHHHHHHHHHhC
Q 008105 329 TYNTLLHSLGSRG--CWDAVDKILDIMNEA 356 (577)
Q Consensus 329 ~~~~ll~~~~~~g--~~~~a~~~~~~~~~~ 356 (577)
-...++.+|.+.+ ++++|+.....+.+.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3445556666655 566666666666543
No 421
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=38.34 E-value=1.8e+02 Score=24.18 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=20.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 008105 193 MVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNG 236 (577)
Q Consensus 193 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 236 (577)
+++.+...+..-.|.++++++.+.+...+..|--.-+..+...|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 44444444444555555555555443333444333444444444
No 422
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=38.15 E-value=60 Score=22.59 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 008105 114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIR 164 (577)
Q Consensus 114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~ 164 (577)
.|....++.++..+++..-.++++..++++.+.|.. +..+|..-++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 345566677777777777777777777777776643 55556555555554
No 423
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.14 E-value=6e+02 Score=28.18 Aligned_cols=302 Identities=11% Similarity=0.110 Sum_probs=140.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008105 122 KILQNFCSRGKLTDASKLIDIMARRNQIPDF--HFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCK 199 (577)
Q Consensus 122 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 199 (577)
.+=+.|...|+++.|++.-+.- |+. .++..-...|.+.+++..|-+++.++.+ .|..+.--+..
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~ 428 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLE 428 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHh
Confidence 3446788899999998876432 222 1233334556778889999998888742 34444444555
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHH-----HHHHHH-hCC----ChHHHHHHHHHHHHC---------CCCCCHHHH
Q 008105 200 RGQIRSAIALLDEMSVSGCEPDVITYNT-----ILRTMF-DNG----KFKQAIGFWKDQLRK---------GCPPYLITY 260 (577)
Q Consensus 200 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~-----li~~~~-~~~----~~~~A~~~~~~~~~~---------~~~~~~~~~ 260 (577)
..+.+.-..++.+=.+ .++|...+-.. ++..|. +.+ ..+++.+-++.-.+. ...-+....
T Consensus 429 ~~~~~~L~~~L~KKL~-~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nr 507 (911)
T KOG2034|consen 429 INQERALRTFLDKKLD-RLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNR 507 (911)
T ss_pred cCCHHHHHHHHHHHHh-hCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhH
Confidence 5555533333322222 12333332222 222221 112 222333333221110 011122223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHc
Q 008105 261 TILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSI-TYNTLLHSLGS 339 (577)
Q Consensus 261 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~ 339 (577)
.+....+...|+.++...+-.-+. .|..++..+++.+.+++|++++..-. .|... -|...+ .
T Consensus 508 etv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~~----~~el~yk~ap~L----i 570 (911)
T KOG2034|consen 508 ETVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQR----NPELFYKYAPEL----I 570 (911)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhcc----chhhHHHhhhHH----H
Confidence 334444555666666655444332 36677788888888888888776542 11111 111111 1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 008105 340 RGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKY---GLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEA 416 (577)
Q Consensus 340 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 416 (577)
.....+....+..+.+. .+..-...++..+.+. .....+...++-....-..-++..+|.++..|++..+-+.
T Consensus 571 ~~~p~~tV~~wm~~~d~---~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~l- 646 (911)
T KOG2034|consen 571 THSPKETVSAWMAQKDL---DPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDL- 646 (911)
T ss_pred hcCcHHHHHHHHHcccc---CchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccch-
Confidence 12223333333322222 2223333444444443 2334444444444443335577888888888876554333
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHH
Q 008105 417 LQLLHLLNGSSCSPCLITYNTLIDGLAKKGC------MEKAMVLYGQMME 460 (577)
Q Consensus 417 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~ 460 (577)
...++.....+.. ...-....++.|.+.+. +..+..+|.++++
T Consensus 647 l~~le~~~~~~~~-~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVd 695 (911)
T KOG2034|consen 647 LLYLEIIKFMKSR-VHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVD 695 (911)
T ss_pred HHHHHHHhhcccc-ceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHH
Confidence 3333333222111 22223344555555443 3334445555544
No 424
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=37.56 E-value=73 Score=17.49 Aligned_cols=28 Identities=7% Similarity=0.194 Sum_probs=14.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008105 516 KKVDMAIQVLELMISSRYKPDDTVFSTIV 544 (577)
Q Consensus 516 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 544 (577)
|+.+.|..+|++++.. .+-+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~-~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEK-FPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHH-CCCChHHHHHHH
Confidence 3456666666666642 223445554443
No 425
>PRK10941 hypothetical protein; Provisional
Probab=37.18 E-value=3.6e+02 Score=25.31 Aligned_cols=73 Identities=11% Similarity=0.008 Sum_probs=35.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 008105 473 LIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISS-RYKPDDTVFSTIVKK 546 (577)
Q Consensus 473 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~ 546 (577)
+-.+|.+.++++.|++..+.+..... .+..-+.--.-.|.+.|.+..|..=++..++. .-.|+.......+..
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 34455556666666666666555321 12333333444455666666666655555432 233444444443333
No 426
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=36.67 E-value=1e+02 Score=21.52 Aligned_cols=49 Identities=18% Similarity=0.104 Sum_probs=29.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008105 150 PDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCK 199 (577)
Q Consensus 150 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 199 (577)
|....++.++..+++..-.++++..+.+..+.| ..+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 455566667777776666777777777777666 3455555555555544
No 427
>PRK09857 putative transposase; Provisional
Probab=36.46 E-value=3.1e+02 Score=26.10 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=13.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008105 542 TIVKKVADDGMTEEAYKLWQKLIEWKVF 569 (577)
Q Consensus 542 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (577)
+++.-+.+.|.-+++.+..++|+..|..
T Consensus 245 TiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 245 TIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4444444444444455555555555444
No 428
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.25 E-value=4.2e+02 Score=29.33 Aligned_cols=95 Identities=12% Similarity=0.124 Sum_probs=55.6
Q ss_pred hcCCHHHHHHHHHHHhhC------CCCccHHHHHHHHHHHH---------------hcCChHHHHHHHHHHHHCCCCCCH
Q 008105 479 RADQVEEAVDLLKEIGKR------GNKMRNSAYRLVIHGLC---------------KSKKVDMAIQVLELMISSRYKPDD 537 (577)
Q Consensus 479 ~~g~~~~A~~~~~~m~~~------~~~~~~~~~~~li~~~~---------------~~g~~~~A~~~~~~m~~~~~~p~~ 537 (577)
..|++.+|.+.|+.+.-. +-.-+..-...++..+. ..+..+.+.++-.-.....++|-.
T Consensus 1003 t~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~H 1082 (1202)
T KOG0292|consen 1003 TEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPMH 1082 (1202)
T ss_pred ccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcHH
Confidence 467788888887776432 11112222333333331 233444444444444445666665
Q ss_pred HH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcc
Q 008105 538 TV--FSTIVKKVADDGMTEEAYKLWQKLIEWKVFEKGT 573 (577)
Q Consensus 538 ~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 573 (577)
.+ ....+..+.+.+++..|..+..++++.++.|+.+
T Consensus 1083 ~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1083 RILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 44 3456677888888888888888888888877643
No 429
>PRK10941 hypothetical protein; Provisional
Probab=36.10 E-value=3.7e+02 Score=25.19 Aligned_cols=60 Identities=12% Similarity=-0.035 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 008105 156 INLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVS 216 (577)
Q Consensus 156 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 216 (577)
+.+-.+|.+.++++.|+.+.+.+.... +.++.-+.--.-.|.+.|.+..|..=++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 335556677777777777777777664 334555555556677777777777766666543
No 430
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=35.89 E-value=2.1e+02 Score=22.24 Aligned_cols=23 Identities=9% Similarity=0.161 Sum_probs=13.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 008105 436 NTLIDGLAKKGCMEKAMVLYGQM 458 (577)
Q Consensus 436 ~~li~~~~~~g~~~~A~~~~~~m 458 (577)
..++..|...++.++|...+.++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 34455566666777776666654
No 431
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=35.60 E-value=1.5e+02 Score=20.42 Aligned_cols=16 Identities=31% Similarity=0.335 Sum_probs=7.4
Q ss_pred hcCCHHHHHHHHHHHh
Q 008105 479 RADQVEEAVDLLKEIG 494 (577)
Q Consensus 479 ~~g~~~~A~~~~~~m~ 494 (577)
+.|++=+|.++++++=
T Consensus 11 n~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELW 26 (62)
T ss_dssp HTT-HHHHHHHHHHHC
T ss_pred cCCCHHHhHHHHHHHH
Confidence 3455555555555543
No 432
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=35.55 E-value=4.9e+02 Score=28.29 Aligned_cols=86 Identities=12% Similarity=0.099 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CC----------ccHHHHHHHHHHHH
Q 008105 448 MEKAMVLYGQMM-ENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRG---NK----------MRNSAYRLVIHGLC 513 (577)
Q Consensus 448 ~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~----------~~~~~~~~li~~~~ 513 (577)
.++....+.... +.|+..+......++... .|+...++.+++++...| +. .+......+++++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 455555555544 467777877777777654 699999999998876532 11 11222334455444
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC
Q 008105 514 KSKKVDMAIQVLELMISSRYKPD 536 (577)
Q Consensus 514 ~~g~~~~A~~~~~~m~~~~~~p~ 536 (577)
.++...++.+++++...|..+.
T Consensus 258 -~~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 258 -NQDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred -cCCHHHHHHHHHHHHHhCCCHH
Confidence 4788888888888887776544
No 433
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.53 E-value=2.4e+02 Score=26.01 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=10.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 008105 438 LIDGLAKKGCMEKAMVLYGQM 458 (577)
Q Consensus 438 li~~~~~~g~~~~A~~~~~~m 458 (577)
+..-|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344455555555555555554
No 434
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=35.30 E-value=4.5e+02 Score=25.93 Aligned_cols=57 Identities=16% Similarity=0.071 Sum_probs=44.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH-hcCChHHHHHHHHHHHH
Q 008105 474 IWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLC-KSKKVDMAIQVLELMIS 530 (577)
Q Consensus 474 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~ 530 (577)
+..+.+.|-+..|.++.+-+...+..-|+.....+|+.|+ ++++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4567788999999999999988766557777777788776 67888888888887654
No 435
>PRK11619 lytic murein transglycosylase; Provisional
Probab=34.53 E-value=6.3e+02 Score=27.36 Aligned_cols=320 Identities=12% Similarity=0.017 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGL 197 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 197 (577)
..|.... ...+.|++..+.++...+...-. ..-..|..+...+ ....+++....+++-. +.+.....-...+..+
T Consensus 35 ~~f~~A~-~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 35 QRYQQIK-QAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRANP--TLPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHH-HHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHCC--CCchHHHHHHHHHHHH
Confidence 3343333 34567778888887776643211 1111122222111 1223443333333321 1122222333445556
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH--
Q 008105 198 CKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR-- 275 (577)
Q Consensus 198 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-- 275 (577)
.+.+++....+.+..- +.+...-.....+....|+.++|.+..+.+=..| ...+..++.++..+.+.|.+..
T Consensus 110 a~~~~w~~~~~~~~~~-----p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d 183 (644)
T PRK11619 110 ARREDWRGLLAFSPEK-----PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLA 183 (644)
T ss_pred HHccCHHHHHHhcCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHH
Confidence 6677777666522111 3455555667777888888777766666655444 2245566677776666555332
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHh------------cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH--ccC
Q 008105 276 AIEVLDDMAIEGCSPDIVTYNSLVNFSCK------------QGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLG--SRG 341 (577)
Q Consensus 276 A~~~~~~~~~~~~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~g 341 (577)
..+-++.+...| +...-..+...+.. ..+...+..++. .+.|+...-..++-++. ...
T Consensus 184 ~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l~Rlar~ 255 (644)
T PRK11619 184 YLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAFASVARQ 255 (644)
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHHHHHHHh
Confidence 222233333222 11111222211100 011111111111 11122211111111111 234
Q ss_pred CHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 008105 342 CWDAVDKILDIMNEAS-HSPT--VFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQ 418 (577)
Q Consensus 342 ~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 418 (577)
+.+.|..++....... ..+. ..++..+.......+..++|...++...... .+......-+..-.+.++++.+..
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHH
Confidence 5577777777764332 2111 1223333333333322556666666554332 233334444445557788888777
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105 419 LLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMM 459 (577)
Q Consensus 419 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 459 (577)
.+..|.... .-...-.-=+.+++...|+.++|...|+++.
T Consensus 334 ~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 334 WLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777765432 1222233345566666788888888888864
No 436
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.48 E-value=4.8e+02 Score=26.00 Aligned_cols=62 Identities=6% Similarity=0.056 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 008105 189 TYNMMVGGLCKRGQIRSAIALLDEMSVSG--CEPDVITYNTILRTMFDNGKFKQAIGFWKDQLR 250 (577)
Q Consensus 189 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 250 (577)
.+.-+.+.|..+|+++.|++.|.+....- .+..+..|..+|..-.-.|+|.....+-.+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 45667777888888888888887754321 122334455555555666777666665555543
No 437
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=34.44 E-value=2.3e+02 Score=22.20 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=13.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 008105 184 VPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSG 217 (577)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 217 (577)
.||...|-+|-. .+.|--+++...+.++...|
T Consensus 68 ~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 68 YPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp -GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred CccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344444443322 24455555555555454433
No 438
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=34.32 E-value=3.7e+02 Score=24.61 Aligned_cols=163 Identities=10% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--
Q 008105 368 LINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGAL-CKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAK-- 444 (577)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-- 444 (577)
++..+-+.++++++...++++...+...+..-.+.+-.+| ...|....+.+++..+....-.........++..|.+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-----------------HHHHHHHHHhh---CCCCccHHH
Q 008105 445 KGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVE-----------------EAVDLLKEIGK---RGNKMRNSA 504 (577)
Q Consensus 445 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-----------------~A~~~~~~m~~---~~~~~~~~~ 504 (577)
..++..-..=+-.+++..+.|...+-...+-.+--.|++- .|.+.|++..+ ..++|...+
T Consensus 87 e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Q ss_pred HHHHHHHHH-----hcCChHHHHHHHHHHHH
Q 008105 505 YRLVIHGLC-----KSKKVDMAIQVLELMIS 530 (577)
Q Consensus 505 ~~~li~~~~-----~~g~~~~A~~~~~~m~~ 530 (577)
+-.++--++ ..|+.++|.++.+...+
T Consensus 167 rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 167 RLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
No 439
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=33.99 E-value=2.4e+02 Score=23.47 Aligned_cols=44 Identities=16% Similarity=0.119 Sum_probs=20.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcC
Q 008105 473 LIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSK 516 (577)
Q Consensus 473 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 516 (577)
++..+...++.-.|.++++++.+.+...+..|....++.+...|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444444444555555555555444444444333344444444
No 440
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=33.78 E-value=3.3e+02 Score=23.94 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=10.3
Q ss_pred HcCCHHHHHHHHHHHHH
Q 008105 269 KQCGIARAIEVLDDMAI 285 (577)
Q Consensus 269 ~~g~~~~A~~~~~~~~~ 285 (577)
+.|+++.|.+.++-|..
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 45666666666666554
No 441
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=33.44 E-value=3.8e+02 Score=24.50 Aligned_cols=36 Identities=11% Similarity=0.241 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 008105 360 PTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPD 396 (577)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 396 (577)
|.+.....++..|. .+++++|.+++.++-+.|..|.
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHH
Confidence 55555555554433 3556666666666666665543
No 442
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=33.29 E-value=2.6e+02 Score=22.58 Aligned_cols=41 Identities=10% Similarity=0.219 Sum_probs=23.6
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008105 521 AIQVLELMISSRYKPD-DTVFSTIVKKVADDGMTEEAYKLWQ 561 (577)
Q Consensus 521 A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 561 (577)
..++|..|...++--. +..|......+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666666555433 3344555556666666666666654
No 443
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.61 E-value=4.1e+02 Score=24.70 Aligned_cols=266 Identities=13% Similarity=0.085 Sum_probs=154.6
Q ss_pred CCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCCHh---hHHHHHHHHHhcCCHHHHHHHHHHHhhC---CC-
Q 008105 252 GCPPYLITYTILIEQ-VCKQCGIARAIEVLDDMAIEGCSPDIV---TYNSLVNFSCKQGKYDDAVLVINNLLSR---GM- 323 (577)
Q Consensus 252 ~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~- 323 (577)
+..||+..-|..-.. -.+....++|+.-|++..+..-..... ....++..+.+.+++++.+..+.+++.- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 456666554432221 124457899999999988753222222 3445688899999999999999988642 11
Q ss_pred -CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----
Q 008105 324 -EPNSITYNTLLHSLGSRGCWDAVDKILDIMNE----A-SHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNC---- 393 (577)
Q Consensus 324 -~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---- 393 (577)
.-+..+.|++++..+...+.+....+++.-.+ . +-..--.|-+.|...|...+.+....++++++...-.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 22455678888887777777777777664432 1 1111222345677788888888888888888765411
Q ss_pred CC-------CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHHHHHHHHHH-----HHhcCCHHHHHHH-HHHHH
Q 008105 394 QP-------DIVTYNTVLGALCKEGMLNEALQLLHLLNGSS-CSPCLITYNTLIDG-----LAKKGCMEKAMVL-YGQMM 459 (577)
Q Consensus 394 ~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~-----~~~~g~~~~A~~~-~~~m~ 459 (577)
.. =...|..-|+.|....+-.+...++++..... .-|.+... .+|+- ..+.|++++|..= |+...
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 11 13567777788887777777777777655422 23444333 33443 3467788887543 33333
Q ss_pred ---HCCCCCCHHH---HHHHHHHHHhcCC----HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008105 460 ---ENGISPDDIT---HRTLIWGFCRADQ----VEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLEL 527 (577)
Q Consensus 460 ---~~g~~p~~~~---~~~li~~~~~~g~----~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 527 (577)
+.| .|...+ |..|...+.++|- ..+| .-..-.|.....+.++.+|.. ++..+-.+++..
T Consensus 260 NYDEsG-spRRttCLKYLVLANMLmkS~iNPFDsQEA-------KPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 260 NYDESG-SPRRTTCLKYLVLANMLMKSGINPFDSQEA-------KPYKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred cccccC-CcchhHHHHHHHHHHHHHHcCCCCCccccc-------CCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 344 233332 4455555555541 1111 111224555667778877754 355555555443
No 444
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.20 E-value=4.4e+02 Score=25.04 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=28.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105 264 IEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLS 320 (577)
Q Consensus 264 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 320 (577)
+....+.++.....+.+..+. ....-...+..+...|++..|++++.+..+
T Consensus 105 l~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344444445555555555443 223334455666677777777777766553
No 445
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=32.19 E-value=3.9e+02 Score=24.21 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC---ChhhHH--HHHHHHHhcCCHHHHHHHHHHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIP---DFHFCI--NLIRGLIRIDRIEKASKVLQIM 178 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~---~~~~~~--~li~~~~~~g~~~~A~~~~~~~ 178 (577)
+..-.|.|+--|.-...+.+|.+.|..- .|+.| +..+.. .-|......|+.+.|++....+
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHh
Confidence 3344556666665555566666655432 23333 222222 2455556666666666666555
No 446
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=31.87 E-value=2.7e+02 Score=22.46 Aligned_cols=57 Identities=11% Similarity=0.086 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHH
Q 008105 504 AYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFS-TIVKKVADDGMTEEAYKLWQKL 563 (577)
Q Consensus 504 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~ 563 (577)
+..++..++.-.|..++|.++++.. ++-++-...+ -+++.|.+..+-++..++-++.
T Consensus 68 cvEAlAAaLyI~G~~~~A~~lL~~F---kWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 68 CVEALAAALYILGFKEQAEELLSKF---KWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4455666666667777776666655 4444443333 3666666666666665554443
No 447
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=31.55 E-value=2.2e+02 Score=21.24 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=6.3
Q ss_pred CChhHHHHHHHHHh
Q 008105 411 GMLNEALQLLHLLN 424 (577)
Q Consensus 411 g~~~~A~~~~~~~~ 424 (577)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 448
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=30.98 E-value=4.2e+02 Score=24.24 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=51.6
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CC-----------CCCCHHHHHHHH
Q 008105 407 LCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMME-NG-----------ISPDDITHRTLI 474 (577)
Q Consensus 407 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g-----------~~p~~~~~~~li 474 (577)
|.+..+..--.++.+-....+++-+..-..+++ +...|++.+|+.-++.-.. .| -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 444444443344444444444444444444443 3567777777777766543 11 135555566666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCccH
Q 008105 475 WGFCRADQVEEAVDLLKEIGKRGNKMRN 502 (577)
Q Consensus 475 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 502 (577)
..|. .+++++|.+.+.++-+.|..|..
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 6544 45677777777777777776543
No 449
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.95 E-value=8e+02 Score=27.53 Aligned_cols=110 Identities=12% Similarity=0.112 Sum_probs=60.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHH-----HHHHhh--CCCCcc----
Q 008105 441 GLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRA--------DQVEEAVDL-----LKEIGK--RGNKMR---- 501 (577)
Q Consensus 441 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g~~~~A~~~-----~~~m~~--~~~~~~---- 501 (577)
.|......+-+..+++.+....-.++....+.++..|... ++.+++.+. +..+.+ ....|.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~ 679 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLE 679 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhh
Confidence 3455667777888888887655556666777777766542 122233333 111211 112221
Q ss_pred ----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------------CCCCCHHHHHHHHHHHHhc
Q 008105 502 ----NSAYRLVIHGLCKSKKVDMAIQVLELMISS-------------RYKPDDTVFSTIVKKVADD 550 (577)
Q Consensus 502 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------~~~p~~~~~~~l~~~~~~~ 550 (577)
...|....-.+.+.|+.++|+.++-..+.. ...++...|..+++.+...
T Consensus 680 ~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 680 RLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 222333333345788888888877655531 1234667777777776655
No 450
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=30.89 E-value=4.8e+02 Score=24.92 Aligned_cols=109 Identities=19% Similarity=0.139 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHhhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008105 413 LNEALQLLHLLNGSSC----SPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVD 488 (577)
Q Consensus 413 ~~~A~~~~~~~~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 488 (577)
.+.|.+.|+.....+. ..+......+.....+.|+.+.-..+++.... .++...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 4566677776665321 23444555556666667765554455444443 2466666777777777777777777
Q ss_pred HHHHHhhCC-CCccHHHHHHHHHHHHhcCCh--HHHHHHHH
Q 008105 489 LLKEIGKRG-NKMRNSAYRLVIHGLCKSKKV--DMAIQVLE 526 (577)
Q Consensus 489 ~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~--~~A~~~~~ 526 (577)
+++.....+ ++ .... ..++.++...+.. +.+.+++.
T Consensus 223 ~l~~~l~~~~v~-~~d~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVR-SQDI-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS--TTTH-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccc-cHHH-HHHHHHHhcCChhhHHHHHHHHH
Confidence 777776643 33 2222 3344444433333 55665554
No 451
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=30.82 E-value=4.2e+02 Score=24.28 Aligned_cols=83 Identities=13% Similarity=0.096 Sum_probs=41.3
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHH
Q 008105 407 LCKEGMLNEALQLLHLLNGSSCSPCLIT-YNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDIT-HRTLIWGFCRADQVE 484 (577)
Q Consensus 407 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~ 484 (577)
|....+++.|..-+.+.+.. .|+..+ |+.=+-.+.+..+++.+..=-.+.++ +.||..- ...+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 33344556666655444433 344433 33444455556666666555444444 3344332 223334445555666
Q ss_pred HHHHHHHHH
Q 008105 485 EAVDLLKEI 493 (577)
Q Consensus 485 ~A~~~~~~m 493 (577)
+|+..+.+.
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 666666665
No 452
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.55 E-value=8.2e+02 Score=27.49 Aligned_cols=116 Identities=12% Similarity=0.145 Sum_probs=64.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--C-CCHHHHHHHHHHHHccCCH--HHHHHHHHHHHhCCCCCCHHHHH--
Q 008105 294 TYNSLVNFSCKQGKYDDAVLVINNLLSRGM--E-PNSITYNTLLHSLGSRGCW--DAVDKILDIMNEASHSPTVFTYN-- 366 (577)
Q Consensus 294 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-p~~~~~~~ll~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~-- 366 (577)
-|..|+..|...|+.++|+++|.+..+..- . .-...+-.++..+.+.+.. +-+.+.-+...+.........++
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 477888888888888888888888876320 0 0111222344444444433 44444433333322111111111
Q ss_pred ----------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008105 367 ----------ILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCK 409 (577)
Q Consensus 367 ----------~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 409 (577)
..+-.|.+....+-+...++.+....-.++..-.+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1123455667777788888888776555666677777777664
No 453
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=30.27 E-value=5.9e+02 Score=28.13 Aligned_cols=85 Identities=11% Similarity=0.077 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---C----------CccHHHHHHHHHHHH
Q 008105 448 MEKAMVLYGQMM-ENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRG---N----------KMRNSAYRLVIHGLC 513 (577)
Q Consensus 448 ~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~----------~~~~~~~~~li~~~~ 513 (577)
.++..+.+++.. +.|+..+......+... ..|+...|+.++++....+ + .++...+..+++++
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL- 256 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL- 256 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 456666666654 45776677666655543 4689999999988865432 1 12222333344433
Q ss_pred hcCChHHHHHHHHHHHHCCCCC
Q 008105 514 KSKKVDMAIQVLELMISSRYKP 535 (577)
Q Consensus 514 ~~g~~~~A~~~~~~m~~~~~~p 535 (577)
..|+..+++.+++++...|+.+
T Consensus 257 ~~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 257 AAGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred HcCCHHHHHHHHHHHHHhCCCH
Confidence 3477888888888887766543
No 454
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.18 E-value=4.7e+02 Score=28.96 Aligned_cols=159 Identities=18% Similarity=0.171 Sum_probs=93.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008105 367 ILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKG 446 (577)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 446 (577)
++|..+.+.|-++-|+.+.++-..+ ...+...|+++.|++.-..+- +..+|..|...-.+.|
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~tR------------F~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qg 686 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERTR------------FELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQG 686 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcchh------------eeeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhc
Confidence 4455555666666666555432211 233456688888876654442 5678888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 008105 447 CMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLE 526 (577)
Q Consensus 447 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 526 (577)
+.+-|+..|++... |.-|--.|.-.|+.++-.++.+....++ |..+. . ..-.-.|+.++=.++++
T Consensus 687 n~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~---D~~~~--~-qnalYl~dv~ervkIl~ 751 (1202)
T KOG0292|consen 687 NHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRN---DATGQ--F-QNALYLGDVKERVKILE 751 (1202)
T ss_pred chHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhh---hhHHH--H-HHHHHhccHHHHHHHHH
Confidence 88888888887654 2333334555677777666655543321 21111 1 11122577888777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008105 527 LMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWK 567 (577)
Q Consensus 527 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (577)
.. |..|-. |. .-..+|.-++|.++.++.-..+
T Consensus 752 n~---g~~~la--yl----ta~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 752 NG---GQLPLA--YL----TAAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred hc---CcccHH--HH----HHhhcCcHHHHHHHHHhhcccc
Confidence 66 544321 11 1235677888888888876643
No 455
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=30.16 E-value=5.2e+02 Score=25.13 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhCCCCcc----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008105 484 EEAVDLLKEIGKRGNKMR----NSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVA 548 (577)
Q Consensus 484 ~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 548 (577)
++.+.++.++.+. -|+ ...|-++++.....|.+++.+.+|++++..|-.|-...-..+++.+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4555555555442 122 23566677777777777777777777777777776666666666554
No 456
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=29.86 E-value=3e+02 Score=22.20 Aligned_cols=43 Identities=9% Similarity=0.172 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008105 520 MAIQVLELMISSRYKPD-DTVFSTIVKKVADDGMTEEAYKLWQK 562 (577)
Q Consensus 520 ~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 562 (577)
++.++|+.|..+|+--. +..|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777776655433 55666777777777777777777764
No 457
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.20 E-value=7.4e+02 Score=26.61 Aligned_cols=86 Identities=12% Similarity=0.122 Sum_probs=54.6
Q ss_pred HHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-C------------ccHHHHHHHHHHHH
Q 008105 448 MEKAMVLYGQM-MENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGN-K------------MRNSAYRLVIHGLC 513 (577)
Q Consensus 448 ~~~A~~~~~~m-~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~------------~~~~~~~~li~~~~ 513 (577)
.++..+.+.+. .+.|+..+......++.. ..|+...++.++++....+. . ++......+++++.
T Consensus 185 ~eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~ 262 (618)
T PRK14951 185 PETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA 262 (618)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34445555444 456887787777777653 46899999999887654331 1 12223334454444
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC
Q 008105 514 KSKKVDMAIQVLELMISSRYKPD 536 (577)
Q Consensus 514 ~~g~~~~A~~~~~~m~~~~~~p~ 536 (577)
.|+...+.++++++.+.|..|.
T Consensus 263 -~~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 263 -QGDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred -cCCHHHHHHHHHHHHHcCCCHH
Confidence 4788888898888887775543
No 458
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=29.17 E-value=2.8e+02 Score=21.66 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008105 365 YNILINGLCKYGLVDRAINSFNQMVS 390 (577)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (577)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 67777777777777777777777765
No 459
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=29.10 E-value=1.2e+02 Score=30.50 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=20.3
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 008105 374 KYGLVDRAINSFNQMVSKNCQPDI-VTYNTVLGALCKEGMLNEALQLLHLLNG 425 (577)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~ 425 (577)
+.+.++.|..++.++++. .||- .-|..-..++.+.+++..|+.=+..+.+
T Consensus 16 ~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred ccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 334445555555555443 2222 2222222344444444444444443333
No 460
>PRK09857 putative transposase; Provisional
Probab=28.86 E-value=4.8e+02 Score=24.84 Aligned_cols=57 Identities=12% Similarity=0.153 Sum_probs=25.3
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 008105 234 DNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPD 291 (577)
Q Consensus 234 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 291 (577)
+.++.++..++++.+.+. .+.......++..-+.+.|.-+++.++..+|...|+.++
T Consensus 218 ~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 218 QTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 334444444444444332 222222333344444444444555566666666655433
No 461
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=28.51 E-value=41 Score=27.27 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=24.2
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 008105 127 FCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRG 161 (577)
Q Consensus 127 ~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~ 161 (577)
..+.|.-.+|..+|+.|+++|-+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34456677899999999999988764 5666543
No 462
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.09 E-value=3.2e+02 Score=22.01 Aligned_cols=14 Identities=21% Similarity=0.152 Sum_probs=4.9
Q ss_pred HHhcCChHHHHHHH
Q 008105 512 LCKSKKVDMAIQVL 525 (577)
Q Consensus 512 ~~~~g~~~~A~~~~ 525 (577)
+...|++++|.+++
T Consensus 109 le~~~~~~~A~~I~ 122 (126)
T PF08311_consen 109 LEKRGNFKKADEIY 122 (126)
T ss_dssp HHHTT-HHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 33333333333333
No 463
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=27.72 E-value=3e+02 Score=21.51 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 008105 225 YNTILRTMFDNGKFKQAIGFWKDQLR 250 (577)
Q Consensus 225 ~~~li~~~~~~~~~~~A~~~~~~~~~ 250 (577)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555555555555555555544
No 464
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=27.66 E-value=4e+02 Score=25.39 Aligned_cols=57 Identities=12% Similarity=0.146 Sum_probs=37.2
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008105 312 VLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLC 373 (577)
Q Consensus 312 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 373 (577)
.++++.+...++.|.-.++.-+.-.+.+.=.+.....+++.+.. |..-|..|+..||
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 45677777777777777776666666666677777777777764 2233555555555
No 465
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=27.53 E-value=3.3e+02 Score=22.23 Aligned_cols=28 Identities=7% Similarity=0.125 Sum_probs=17.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 008105 122 KILQNFCSRGKLTDASKLIDIMARRNQI 149 (577)
Q Consensus 122 ~li~~~~~~g~~~~A~~l~~~~~~~~~~ 149 (577)
.++--+...|+++.|+.+.+.+++.|.+
T Consensus 53 ~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 53 TVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred hhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 3444556677777777777777766643
No 466
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=27.27 E-value=6.6e+02 Score=25.40 Aligned_cols=59 Identities=10% Similarity=0.117 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008105 506 RLVIHGLCKSKKVDMAIQVLELMISSRYKP--DDTVFSTIVKKVADDGMTEEAYKLWQKLIEWK 567 (577)
Q Consensus 506 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (577)
..++.-|...|+..+|.+.++++ |++. ...++.+++.+..+.|+-..-..+++.....|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 34566666677777777776665 4322 23455666666666666555555555554443
No 467
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=27.06 E-value=1.8e+02 Score=22.72 Aligned_cols=44 Identities=9% Similarity=0.086 Sum_probs=22.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 008105 123 ILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRID 166 (577)
Q Consensus 123 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g 166 (577)
++..+...+..-.|.++++.+.+.+...+..|-...+..+.+.|
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 34444444555556666666655554444444444444444444
No 468
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=26.84 E-value=5.5e+02 Score=24.33 Aligned_cols=51 Identities=14% Similarity=0.309 Sum_probs=27.0
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 008105 194 VGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLR 250 (577)
Q Consensus 194 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 250 (577)
+..+.+.++..+..+.+..+. ....-...+..+...|++..|+++..+..+
T Consensus 105 l~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344444444444444444443 233334455566667777777776666543
No 469
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=26.13 E-value=6.2e+02 Score=24.66 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 008105 448 MEKAMVLYGQMMENGISPDD----ITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLC 513 (577)
Q Consensus 448 ~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 513 (577)
.+++..++.+++.. -|+. ..|..++......|.++..+.+|++.+..|..|-...-..+++.+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 35677777777664 3553 3577777888888888888888888888888887777666666654
No 470
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=25.98 E-value=4.6e+02 Score=23.10 Aligned_cols=19 Identities=21% Similarity=0.100 Sum_probs=9.7
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 008105 441 GLAKKGCMEKAMVLYGQMM 459 (577)
Q Consensus 441 ~~~~~g~~~~A~~~~~~m~ 459 (577)
.....|++++|..-++++.
T Consensus 38 ~~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHHhccHHHHHHHHHHHH
Confidence 3344555555555555543
No 471
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=25.96 E-value=5.2e+02 Score=23.74 Aligned_cols=83 Identities=10% Similarity=0.042 Sum_probs=45.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHhCCChHH
Q 008105 163 IRIDRIEKASKVLQIMVMSGGVPDT-ITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITY-NTILRTMFDNGKFKQ 240 (577)
Q Consensus 163 ~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li~~~~~~~~~~~ 240 (577)
....+++.|+.-+.+.+.. .|++ ..|+.-+..+.+..+++.+..--.+..+. .||.+-- ..+..+......+++
T Consensus 21 f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccH
Confidence 3345566666666665554 3444 34455555666666666666555555443 3444332 233445556666777
Q ss_pred HHHHHHHHH
Q 008105 241 AIGFWKDQL 249 (577)
Q Consensus 241 A~~~~~~~~ 249 (577)
|+..+.+..
T Consensus 97 aI~~Lqra~ 105 (284)
T KOG4642|consen 97 AIKVLQRAY 105 (284)
T ss_pred HHHHHHHHH
Confidence 777766653
No 472
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.66 E-value=56 Score=31.29 Aligned_cols=89 Identities=19% Similarity=0.119 Sum_probs=43.3
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHH
Q 008105 339 SRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDI-VTYNTVLGALCKEGMLNEAL 417 (577)
Q Consensus 339 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~ 417 (577)
..|.++.|.+.|...++.+ ++....|..-.+++.+.+++..|++=+....+. .||. ..|-.--.+....|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 3455666666665555543 234444444455555556666665555555443 2222 11222222223345666666
Q ss_pred HHHHHHhhCCCCC
Q 008105 418 QLLHLLNGSSCSP 430 (577)
Q Consensus 418 ~~~~~~~~~~~~p 430 (577)
+.+....+.+..+
T Consensus 203 ~dl~~a~kld~dE 215 (377)
T KOG1308|consen 203 HDLALACKLDYDE 215 (377)
T ss_pred HHHHHHHhccccH
Confidence 6666555554433
No 473
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=25.32 E-value=5.3e+02 Score=23.64 Aligned_cols=81 Identities=19% Similarity=0.291 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-------C-C------------ccH
Q 008105 448 MEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKR-----G-------N-K------------MRN 502 (577)
Q Consensus 448 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-------~-~------------~~~ 502 (577)
+++|...++..... ..+..+...+..++...|+...+.++++.+... + . . .++
T Consensus 115 i~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~v 192 (246)
T PF07678_consen 115 INKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDV 192 (246)
T ss_dssp HHHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHH
T ss_pred HHHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHH
Confidence 34555555554332 356666666666677777777777777666432 0 0 0 012
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105 503 SAYRLVIHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 503 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 530 (577)
++-...+-++.+.++.+.+..+.+-+.+
T Consensus 193 EtTaYaLLa~l~~~~~~~~~~iv~WL~~ 220 (246)
T PF07678_consen 193 ETTAYALLALLKRGDLEEASPIVRWLIS 220 (246)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 2222333445555888888888887775
No 474
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=25.29 E-value=7.9e+02 Score=25.62 Aligned_cols=87 Identities=13% Similarity=0.202 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC------C----------CccHHHHHHHH
Q 008105 447 CMEKAMVLYGQMM-ENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRG------N----------KMRNSAYRLVI 509 (577)
Q Consensus 447 ~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~----------~~~~~~~~~li 509 (577)
..++....++... +.|+..+......++.. ..|+...|...++++...+ + .++......++
T Consensus 188 s~~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~ 265 (507)
T PRK06645 188 SFEEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFV 265 (507)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHH
Confidence 3455555555544 46777777776666653 4689999999999875421 1 11222223344
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC
Q 008105 510 HGLCKSKKVDMAIQVLELMISSRYKPD 536 (577)
Q Consensus 510 ~~~~~~g~~~~A~~~~~~m~~~~~~p~ 536 (577)
++. ..|+.++|..+++++...|..|.
T Consensus 266 ~ai-~~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 266 EYI-IHRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred HHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 444 45889999999999988876654
No 475
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=25.12 E-value=4.8e+02 Score=23.01 Aligned_cols=55 Identities=15% Similarity=0.086 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008105 437 TLIDGLAKKGCMEKAMVLYGQMMENGI--------------SPDDITHRTLIWGFCRADQVEEAVDLLK 491 (577)
Q Consensus 437 ~li~~~~~~g~~~~A~~~~~~m~~~g~--------------~p~~~~~~~li~~~~~~g~~~~A~~~~~ 491 (577)
+++-.|-+..++.++.++++.|.+..+ .+.-...|.....+.++|.+|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 345556666677777777777755321 1222334555556666666666666665
No 476
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=24.93 E-value=1e+03 Score=26.83 Aligned_cols=82 Identities=9% Similarity=0.078 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008105 482 QVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS-SRYKPDDTVFSTIVKKVADDGMTEEAYKLW 560 (577)
Q Consensus 482 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 560 (577)
..+.-.+.|.++.+.--.-|..++..-.......|++-.|.+++.++.+ .+-.++...|..++..+...|.- .-..++
T Consensus 1211 ~ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~ 1289 (1304)
T KOG1114|consen 1211 KLDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFV 1289 (1304)
T ss_pred hhhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHH
Confidence 3455556666665521123555666666667778899999999888876 45677888888888888888865 333444
Q ss_pred HHHH
Q 008105 561 QKLI 564 (577)
Q Consensus 561 ~~~~ 564 (577)
+.+.
T Consensus 1290 ~~~~ 1293 (1304)
T KOG1114|consen 1290 KNWM 1293 (1304)
T ss_pred hhhe
Confidence 4443
No 477
>PRK12798 chemotaxis protein; Reviewed
Probab=24.90 E-value=7.2e+02 Score=24.96 Aligned_cols=191 Identities=13% Similarity=0.038 Sum_probs=100.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChh
Q 008105 340 RGCWDAVDKILDIMNEASHSPTVFTYNILINGLC-KYGLVDRAINSFNQMVSKNCQPDI----VTYNTVLGALCKEGMLN 414 (577)
Q Consensus 340 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~ 414 (577)
.|+.+++.+.+..+.....++....+-.|+.+-. -..++..|+++|+...-. .|.. .....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6788888888888877767777777777766544 346788888888876643 3332 23344445566777777
Q ss_pred HHHHHHHHHhhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 008105 415 EALQLLHLLNGS-SCSPCLI-TYNTLIDGLAKKGCMEKAMVLYGQMMENGISPD--DITHRTLIWGFCRADQVEEAVDLL 490 (577)
Q Consensus 415 ~A~~~~~~~~~~-~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~ 490 (577)
++..+-.+-... ...|-.. .+..+..++.+.++-..- +.+..+... +.|+ ...|..+...-.-.|+.+-|.-.-
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 766554433322 1122222 222333344443321111 223333332 1222 446777777777778877777777
Q ss_pred HHHhhCCCCcc-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 008105 491 KEIGKRGNKMR-----NSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPD 536 (577)
Q Consensus 491 ~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 536 (577)
++.....-..+ ...|..+. -.-..++++|.+.+..+-...+.|.
T Consensus 281 ~~A~~L~~~~~~~~~ra~LY~aaa--~v~s~~~~~al~~L~~I~~~~L~~~ 329 (421)
T PRK12798 281 ERALKLADPDSADAARARLYRGAA--LVASDDAESALEELSQIDRDKLSER 329 (421)
T ss_pred HHHHHhccCCCcchHHHHHHHHHH--ccCcccHHHHHHHHhcCChhhCChh
Confidence 76655321111 11122111 1224456666666666654444443
No 478
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=24.46 E-value=3.4e+02 Score=21.02 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=11.0
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 008105 193 MVGGLCKRGQIRSAIALLDEM 213 (577)
Q Consensus 193 li~~~~~~g~~~~A~~~~~~~ 213 (577)
++.-|...|+.++|..-+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344455556666666655554
No 479
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.39 E-value=51 Score=31.51 Aligned_cols=89 Identities=15% Similarity=0.012 Sum_probs=50.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhCCChHHHH
Q 008105 164 RIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDV-ITYNTILRTMFDNGKFKQAI 242 (577)
Q Consensus 164 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~~~~~~A~ 242 (577)
..|.++.|++.|...++.+ ++....|.--.+++.+.+++..|++=++..... .||. ..|-.--.+..-.|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 4566777777777776664 445555555556666677777776666665543 2322 22222223333456666666
Q ss_pred HHHHHHHHCCCCC
Q 008105 243 GFWKDQLRKGCPP 255 (577)
Q Consensus 243 ~~~~~~~~~~~~~ 255 (577)
..++...+.+..+
T Consensus 203 ~dl~~a~kld~dE 215 (377)
T KOG1308|consen 203 HDLALACKLDYDE 215 (377)
T ss_pred HHHHHHHhccccH
Confidence 6666665554433
No 480
>PHA03100 ankyrin repeat protein; Provisional
Probab=24.27 E-value=7.8e+02 Score=25.17 Aligned_cols=234 Identities=15% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHH--HHHH-----HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 008105 172 SKVLQIMVMSGGVPDTITYNM--MVGG-----LCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGF 244 (577)
Q Consensus 172 ~~~~~~~~~~g~~~~~~~~~~--li~~-----~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~ 244 (577)
.++++.+++.|..++...... .+.. .+..|..+-+.-+++.-.... .++....+.+..+.. ....-.++
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~-~~d~~g~tpL~~A~~---~~~~~~~i 123 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVN-APDNNGITPLLYAIS---KKSNSYSI 123 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCC-CCCCCCCchhhHHHh---cccChHHH
Q ss_pred HHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhH--HHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105 245 WKDQLRKGCPPYLITYT--ILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTY--NSLVNFSCKQGKYDDAVLVINNLLS 320 (577)
Q Consensus 245 ~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~ 320 (577)
++.+.+.|..++..... ..+..+++.|. .-.++.+.+.+.|..++.... .+.+...+..| -.++.+.+.+
T Consensus 124 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~----~~~iv~~Ll~ 197 (480)
T PHA03100 124 VEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG----NIDVIKFLLD 197 (480)
T ss_pred HHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC----CHHHHHHHHH
Q ss_pred CCCCCCHHHH--------HHHHHHHHccCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008105 321 RGMEPNSITY--------NTLLHSLGSRGC--WDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVS 390 (577)
Q Consensus 321 ~g~~p~~~~~--------~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (577)
.|..++.... ...+...+..|+ .+-+..+++.-..-+.. +..-.+.+..+..... .++++.+.+
T Consensus 198 ~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~-d~~g~TpL~~A~~~~~-----~~iv~~Ll~ 271 (480)
T PHA03100 198 NGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIK-DVYGFTPLHYAVYNNN-----PEFVKYLLD 271 (480)
T ss_pred cCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCC-----HHHHHHHHH
Q ss_pred CCCCCCHHHHH--HHHHHHHhcCChhHHHHHHH
Q 008105 391 KNCQPDIVTYN--TVLGALCKEGMLNEALQLLH 421 (577)
Q Consensus 391 ~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~ 421 (577)
.|..++..... +-+....+.+..+-+..+++
T Consensus 272 ~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~ 304 (480)
T PHA03100 272 LGANPNLVNKYGDTPLHIAILNNNKEIFKLLLN 304 (480)
T ss_pred cCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHh
No 481
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=24.13 E-value=6.4e+02 Score=24.13 Aligned_cols=86 Identities=10% Similarity=0.143 Sum_probs=59.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----------CCChHHH
Q 008105 172 SKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD----------NGKFKQA 241 (577)
Q Consensus 172 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----------~~~~~~A 241 (577)
.++++.+.+.++.|.-+.+.=+.-.+.+.=.+.+.+.+++.+.. |..-|..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 56888888888888888777666677788888899999998874 33335556655543 6888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH
Q 008105 242 IGFWKDQLRKGCPPYLITYTILIEQ 266 (577)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~l~~~ 266 (577)
.++++.. .+.|....-++.+.
T Consensus 338 mkLLQ~y----p~tdi~~~l~~A~~ 358 (370)
T KOG4567|consen 338 MKLLQNY----PTTDISKMLAVADS 358 (370)
T ss_pred HHHHhcC----CCCCHHHHHHHHHH
Confidence 8776543 34455444444443
No 482
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=23.97 E-value=3.3e+02 Score=21.45 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=9.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHc
Q 008105 123 ILQNFCSRGKLTDASKLIDIMARR 146 (577)
Q Consensus 123 li~~~~~~g~~~~A~~l~~~~~~~ 146 (577)
++.-+.+|...++|+++.+.|.++
T Consensus 67 ViD~lrRC~T~EEALEVInylek~ 90 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKR 90 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHh
Confidence 333444444444444444444443
No 483
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=23.81 E-value=1.8e+02 Score=23.02 Aligned_cols=43 Identities=12% Similarity=0.086 Sum_probs=19.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 008105 122 KILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIR 164 (577)
Q Consensus 122 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~ 164 (577)
.++..+.+.+..-.|.++++.+.+.+...+..|-..-+..+.+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 54 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEE 54 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHH
Confidence 3444444444455555555555555444444433333333333
No 484
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=23.76 E-value=6.5e+02 Score=25.19 Aligned_cols=58 Identities=19% Similarity=0.141 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 008105 157 NLIRGLIRIDRIEKASKVLQIMVMS--GGVPDTITYNMMVGGLCKRGQIRSAIALLDEMS 214 (577)
Q Consensus 157 ~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 214 (577)
.|++...-.|+.+...+.++.|.+. |..|....---+.-+|.-.|++.+|.+.|-...
T Consensus 240 GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 240 GLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 3555556667766666666666543 222322211234455666677777777776554
No 485
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=23.31 E-value=6.8e+02 Score=24.17 Aligned_cols=95 Identities=14% Similarity=0.059 Sum_probs=53.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCH----HH
Q 008105 329 TYNTLLHSLGSRGCWDAVDKILDIMN----EASHSPTVFTYNILING-LCKYGLVDRAINSFNQMVSKNCQPDI----VT 399 (577)
Q Consensus 329 ~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~----~~ 399 (577)
.+......|++.|+.+.|.+.+.... ..|.+.|+..+..-+.. |....-..+-++..+.+.+.|...+. .+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 45556667888888888877766543 34666666655443332 23333345555555666666543332 23
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhh
Q 008105 400 YNTVLGALCKEGMLNEALQLLHLLNG 425 (577)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~ 425 (577)
|..+- +....++.+|-.+|-+...
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 33332 2334577778777766554
No 486
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=23.29 E-value=3.1e+02 Score=21.57 Aligned_cols=25 Identities=12% Similarity=0.213 Sum_probs=14.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCC
Q 008105 193 MVGGLCKRGQIRSAIALLDEMSVSG 217 (577)
Q Consensus 193 li~~~~~~g~~~~A~~~~~~~~~~g 217 (577)
+++.+.++...++|+++++-|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444455555666666666666555
No 487
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.29 E-value=4.7e+02 Score=22.38 Aligned_cols=67 Identities=10% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008105 344 DAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEG 411 (577)
Q Consensus 344 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 411 (577)
+....+-+.+.+.|...+..-. .++..+...++.-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 8 ~~~~~~~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 8 ELLAQAEKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
No 488
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=22.95 E-value=1.4e+02 Score=17.41 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHH
Q 008105 518 VDMAIQVLELMISSRYKPDDTVFST 542 (577)
Q Consensus 518 ~~~A~~~~~~m~~~~~~p~~~~~~~ 542 (577)
++.|..+|++.+. +.|++.+|..
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wik 25 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWIK 25 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHHH
Confidence 4566666666653 2455555543
No 489
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=22.87 E-value=1.9e+02 Score=29.05 Aligned_cols=113 Identities=12% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhc------
Q 008105 442 LAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKS------ 515 (577)
Q Consensus 442 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~------ 515 (577)
+...|++.+|+..|+.++ +...+.......+.+++.+++....+ .....-+..-.+.
T Consensus 214 ~~t~gKF~eA~~~Fr~iL----------~~i~l~vv~~~~E~~e~~eli~icrE-------Yilgl~iEl~Rr~l~~~~~ 276 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSIL----------HSIPLLVVESREEEDEAKELIEICRE-------YILGLSIELERRELPKDPV 276 (422)
T ss_dssp HHHTT-HHHHHHHHHHHH----------HHHHC--BSSCHHHHHHHHHHHHHHH-------HHHHHHHHHHHCTS-TTTH
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeecCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccccch
Q ss_pred CChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008105 516 KKVDMAIQVLELMISSRYKPD--DTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEK 571 (577)
Q Consensus 516 g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 571 (577)
.+.+...++---+....++|. .-+...-+..+.+.+++..|..+.+++++.++.++
T Consensus 277 ~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 277 EDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred hhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
No 490
>PRK13342 recombination factor protein RarA; Reviewed
Probab=22.77 E-value=7.9e+02 Score=24.72 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=9.4
Q ss_pred CChHHHHHHHHHHHHCCCCC
Q 008105 236 GKFKQAIGFWKDQLRKGCPP 255 (577)
Q Consensus 236 ~~~~~A~~~~~~~~~~~~~~ 255 (577)
.+.+.|+..+..|++.|..|
T Consensus 244 sd~~aal~~l~~~l~~G~d~ 263 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDP 263 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44444555555554444333
No 491
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=22.75 E-value=1.7e+02 Score=29.60 Aligned_cols=101 Identities=13% Similarity=-0.014 Sum_probs=46.8
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 008105 406 ALCKEGMLNEALQLLHLLNGSSCSPCLITY-NTLIDGLAKKGCMEKAMVLYGQMMENGISPD-DITHRTLIWGFCRADQV 483 (577)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~ 483 (577)
.+.+.+.++.|..++.++++. .||...| ..=..++.+.+++..|+.=+...++.. |+ ...|..=..++.+.+.+
T Consensus 13 ~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHH
Confidence 344455566666666666554 2333222 222245555666666655555555432 22 11222223344444455
Q ss_pred HHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 008105 484 EEAVDLLKEIGKRGNKMRNSAYRLVIHGL 512 (577)
Q Consensus 484 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 512 (577)
.+|...|+.... +.|+..-...+++-|
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 555555554443 245544444444443
No 492
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=22.73 E-value=7.5e+02 Score=24.40 Aligned_cols=56 Identities=9% Similarity=0.034 Sum_probs=35.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHH
Q 008105 299 VNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLG-SRGCWDAVDKILDIMN 354 (577)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~ 354 (577)
+..+.+.|-+..|+++.+-+...+..-|......+|+.|+ +.++++-..++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 4556677777777777777777655545656666666654 4556665666655543
No 493
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.64 E-value=8.9e+02 Score=25.25 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHH------------HHHHHHHHH
Q 008105 447 CMEKAMVLYGQM-MENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSA------------YRLVIHGLC 513 (577)
Q Consensus 447 ~~~~A~~~~~~m-~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~------------~~~li~~~~ 513 (577)
..++....+.+. .+.|+..+......++.. ..|+...+...++++...+-..+... ...+++++
T Consensus 176 s~~el~~~L~~i~~~egi~i~~~Al~~ia~~--s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al- 252 (504)
T PRK14963 176 TEEEIAGKLRRLLEAEGREAEPEALQLVARL--ADGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL- 252 (504)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-
Confidence 345555555554 346777777666666544 35788888888887655432222111 11233333
Q ss_pred hcCChHHHHHHHHHHHHCC
Q 008105 514 KSKKVDMAIQVLELMISSR 532 (577)
Q Consensus 514 ~~g~~~~A~~~~~~m~~~~ 532 (577)
..++.++|..+++++...|
T Consensus 253 ~~~d~~~Al~~l~~Ll~~G 271 (504)
T PRK14963 253 AQGDAAEALSGAAQLYRDG 271 (504)
T ss_pred HcCCHHHHHHHHHHHHHcC
Confidence 3455666666666665544
No 494
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=22.46 E-value=5.4e+02 Score=22.69 Aligned_cols=55 Identities=24% Similarity=0.263 Sum_probs=28.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008105 332 TLLHSLGSRGCWDAVDKILDIMNEASH--------------SPTVFTYNILINGLCKYGLVDRAINSFN 386 (577)
Q Consensus 332 ~ll~~~~~~g~~~~a~~~~~~~~~~~~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~ 386 (577)
+++..|.+.-++.+..++++.|.+..+ .+--...|.....+.+.|..|.|+.+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 344455555566666666666554321 1122334445555556666666665554
No 495
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.21 E-value=8e+02 Score=24.55 Aligned_cols=62 Identities=10% Similarity=0.105 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008105 223 ITYNTILRTMFDNGKFKQAIGFWKDQLRKGCP---PYLITYTILIEQVCKQCGIARAIEVLDDMAI 285 (577)
Q Consensus 223 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 285 (577)
..+.-+...|...|+++.|++.|.+...- +. .....|..+|..-.-.|+|........+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 44566777788888888888888774432 11 1223344455555556666666655555543
No 496
>PRK09462 fur ferric uptake regulator; Provisional
Probab=21.98 E-value=4.6e+02 Score=21.71 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008105 379 DRAINSFNQMVSKNCQPDIVTYNTVLGALCKEG 411 (577)
Q Consensus 379 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 411 (577)
-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 34 ~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 34 VSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 334444444444333333333333333343333
No 497
>PRK13342 recombination factor protein RarA; Reviewed
Probab=21.89 E-value=8.3e+02 Score=24.60 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=24.3
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008105 295 YNSLVNFSCK---QGKYDDAVLVINNLLSRGMEPNSITYNTLLHSL 337 (577)
Q Consensus 295 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 337 (577)
+..+++++.+ ..+.+.|+.++..|.+.|..|....-..++.++
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3334444443 467777777777777777666544444444333
No 498
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.82 E-value=6.3e+02 Score=23.18 Aligned_cols=261 Identities=9% Similarity=0.001 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008105 134 TDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEM 213 (577)
Q Consensus 134 ~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 213 (577)
.+|.++..+..++......+. .+.-.+++++|-++|.+. .++|--..++..|=..|.+.
T Consensus 2 ~~a~~l~k~AEkK~~~s~gF~------lfgg~~k~eeAadl~~~A---------------an~yklaK~w~~AG~aflka 60 (288)
T KOG1586|consen 2 SDAVQLMKKAEKKLNGSGGFL------LFGGSNKYEEAAELYERA---------------ANMYKLAKNWSAAGDAFLKA 60 (288)
T ss_pred ccHHHHHHHHHHhcccCCccc------ccCCCcchHHHHHHHHHH---------------HHHHHHHHhHHHHHHHHHHH
Q ss_pred h----hCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008105 214 S----VSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCS 289 (577)
Q Consensus 214 ~----~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 289 (577)
. +.|-+.|..+--.-..-+.+..++++|...++..++. |...|++..|-+...++-+. ..
T Consensus 61 A~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieI---------------yt~~Grf~~aAk~~~~iaEi-yE 124 (288)
T KOG1586|consen 61 ADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEI---------------YTDMGRFTMAAKHHIEIAEI-YE 124 (288)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHH---------------HHhhhHHHHHHhhhhhHHHH-Hh
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH-
Q 008105 290 PDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNIL- 368 (577)
Q Consensus 290 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l- 368 (577)
.+..-+...|..|-+.+++-...+.- ......+.-+...-+..+++..|.++|+++.......+..-|..-
T Consensus 125 sdl~d~ekaI~~YE~Aae~yk~ees~--------ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kd 196 (288)
T KOG1586|consen 125 SDLQDFEKAIAHYEQAAEYYKGEESV--------SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKD 196 (288)
T ss_pred hhHHHHHHHHHHHHHHHHHHcchhhh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHH
Q ss_pred -----HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008105 369 -----INGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLI 439 (577)
Q Consensus 369 -----i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 439 (577)
.-++.-..+.-.+...+++-.+..+.-...-=..++.-+...-+-.....+-+...+-+.-.....|..-+
T Consensus 197 yflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vkefDsisrLD~W~tti 272 (288)
T KOG1586|consen 197 YFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRLDQWKTTI 272 (288)
T ss_pred HHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchHHHHHHHH
No 499
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=21.71 E-value=1.2e+03 Score=26.48 Aligned_cols=265 Identities=12% Similarity=0.060 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 008105 254 PPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTL 333 (577)
Q Consensus 254 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 333 (577)
.+|..+-...+..+.+.+..+-...+...+. .++...-...+.++.+.+........+..++.. +|...-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~----D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALG----DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 008105 334 LHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGML 413 (577)
Q Consensus 334 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 413 (577)
+..+...+..+ ...+...+.. +|..+-...+.++.+.+..+.....+. .++...-...+.++...+..
T Consensus 705 ~~aL~~~~~~~-~~~l~~~L~D----~d~~VR~~Av~aL~~~~~~~~l~~~l~-------D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-AALFAAALGD----PDHRVRIEAVRALVSVDDVESVAGAAT-------DENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-HHHHHHHhcC----CCHHHHHHHHHHHhcccCcHHHHHHhc-------CCCHHHHHHHHHHHHHhccc
Q ss_pred hH-HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008105 414 NE-ALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKE 492 (577)
Q Consensus 414 ~~-A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 492 (577)
+. +...+..+.+ .++...-...+.++...|..+.+...+..+.+. +|...=...+.++...+. +++...+..
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHHHH
Q ss_pred HhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008105 493 IGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADD 550 (577)
Q Consensus 493 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 550 (577)
+.+ .|+...-...+.++.+.+....+...+..+.+ .+|..+-.....++...
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~---D~d~~Vr~~A~~aL~~~ 897 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT---DSDADVRAYARRALAHA 897 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHhhC
No 500
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=21.18 E-value=3.2e+02 Score=19.56 Aligned_cols=33 Identities=18% Similarity=0.083 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008105 167 RIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKR 200 (577)
Q Consensus 167 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 200 (577)
+.+.|..++..+.... +.++..||++...+.++
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 3456666666665443 56677788777666554
Done!